Citrus Sinensis ID: 000774
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1293 | 2.2.26 [Sep-21-2011] | |||||||
| Q42093 | 1623 | ABC transporter C family | yes | no | 0.996 | 0.794 | 0.815 | 0.0 | |
| Q9C8G9 | 1622 | ABC transporter C family | no | no | 0.996 | 0.794 | 0.791 | 0.0 | |
| Q9C8H0 | 1495 | ABC transporter C family | no | no | 0.892 | 0.771 | 0.748 | 0.0 | |
| Q9C8H1 | 1495 | ABC transporter C family | no | no | 0.892 | 0.771 | 0.727 | 0.0 | |
| Q28689 | 1564 | Canalicular multispecific | yes | no | 0.868 | 0.718 | 0.408 | 0.0 | |
| Q63120 | 1541 | Canalicular multispecific | yes | no | 0.877 | 0.735 | 0.401 | 0.0 | |
| Q92887 | 1545 | Canalicular multispecific | yes | no | 0.873 | 0.730 | 0.403 | 0.0 | |
| Q5F364 | 1525 | Multidrug resistance-asso | no | no | 0.873 | 0.740 | 0.406 | 0.0 | |
| Q8VI47 | 1543 | Canalicular multispecific | yes | no | 0.880 | 0.737 | 0.408 | 0.0 | |
| O35379 | 1528 | Multidrug resistance-asso | no | no | 0.876 | 0.741 | 0.405 | 0.0 |
| >sp|Q42093|AB2C_ARATH ABC transporter C family member 2 OS=Arabidopsis thaliana GN=ABCC2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 2152 bits (5577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1058/1298 (81%), Positives = 1177/1298 (90%), Gaps = 9/1298 (0%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
MQ+D PAW+GYIYAFSIFVGVV GVLCEAQYFQNVMRVG+RLRS L+AAVFRKSLR+T+E
Sbjct: 330 MQEDAPAWMGYIYAFSIFVGVVFGVLCEAQYFQNVMRVGYRLRSALIAAVFRKSLRLTNE 389
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 120
R+ F +GKITNLMTTDAE LQQ+CQ+LHT+WSAPFRIII+L+LLY +LGVASL+GALLL
Sbjct: 390 GRRKFQTGKITNLMTTDAESLQQICQSLHTMWSAPFRIIIALILLYQQLGVASLIGALLL 449
Query: 121 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
V MFP+QT IIS+MQKLTKEGLQRTDKRIGLMNE+LAAMD VKCYAWENSFQSKVQ VR+
Sbjct: 450 VLMFPLQTVIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRD 509
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
DELSWFRK+Q L A N FILNSIPVLVT+VSFG+FTLLGGDLTPARAFTSLSLFAVLRFP
Sbjct: 510 DELSWFRKSQLLGALNMFILNSIPVLVTIVSFGVFTLLGGDLTPARAFTSLSLFAVLRFP 569
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
LFMLPN+ITQVVNANVSLKR+EE L EE+ILLPNPP+ G PAISIRNGYFSWDSK +R
Sbjct: 570 LFMLPNIITQVVNANVSLKRLEEVLATEERILLPNPPIEPGEPAISIRNGYFSWDSKGDR 629
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
PTL NINLD+P+GSLVA+VG TGEGKTSLISA+LGELP SDA +RG+VAYVPQVSWI
Sbjct: 630 PTLSNINLDVPLGSLVAVVGSTGEGKTSLISAILGELPATSDAIVTLRGSVAYVPQVSWI 689
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
FNATVRDNILFGS F+ +YE+AIDVTSL+HDL+LLPGGD+TEIGERGVNISGGQKQRVS
Sbjct: 690 FNATVRDNILFGSPFDREKYERAIDVTSLKHDLELLPGGDLTEIGERGVNISGGQKQRVS 749
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
MARAVYSNSDV+IFDDPLSALDAHVG+QVF++CI+ EL KTRVLVTNQLHFLSQVDRI+
Sbjct: 750 MARAVYSNSDVYIFDDPLSALDAHVGQQVFEKCIKRELGQKTRVLVTNQLHFLSQVDRIV 809
Query: 481 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDN 540
LVHEG VKEEGT+E+LS+NG LFQ+LMENAGK+EEY EE + E D +P ANG N
Sbjct: 810 LVHEGTVKEEGTYEELSSNGPLFQRLMENAGKVEEYSEENGEAEA-DQTAEQPVANGNTN 868
Query: 541 DLPKEASDTRKTKEG-----KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCY 595
L + SD +K+KEG KSVLIKQEERETGVVS++VL RY+DALGG WVV++LLLCY
Sbjct: 869 GLQMDGSDDKKSKEGNKKGGKSVLIKQEERETGVVSWRVLKRYQDALGGAWVVMMLLLCY 928
Query: 596 FLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYA 655
LTE RV+SSTWLS WTD + K+HGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYA
Sbjct: 929 VLTEVFRVTSSTWLSEWTDAGTPKSHGPLFYNLIYALLSFGQVLVTLTNSYWLIMSSLYA 988
Query: 656 AKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLST 715
AK+LHD MLHSILRAPM FFHTNPLGRIINRFAKDLGDIDR VAVFVNMFMGQVSQLLST
Sbjct: 989 AKKLHDNMLHSILRAPMSFFHTNPLGRIINRFAKDLGDIDRTVAVFVNMFMGQVSQLLST 1048
Query: 716 FVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLST 775
VLIGIVST+SLWAIMPLL+LFY AYLYYQ+TAREVKR+DSI+RSPVYAQFGEALNGLST
Sbjct: 1049 VVLIGIVSTLSLWAIMPLLVLFYGAYLYYQNTAREVKRMDSISRSPVYAQFGEALNGLST 1108
Query: 776 IRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 835
IRAYKAYDRMADING+SMD NIR+TLVNMGANRWL IRLE +GGLMIWLTA+FAV+QNG
Sbjct: 1109 IRAYKAYDRMADINGRSMDNNIRFTLVNMGANRWLGIRLETLGGLMIWLTASFAVMQNGR 1168
Query: 836 AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 895
AENQ+AFASTMGLLLSYALNITSLLT VLRLASLAENSLNAVERVGNYIE+P EAP VIE
Sbjct: 1169 AENQQAFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERVGNYIEIPPEAPPVIE 1228
Query: 896 SNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNT 955
+NRPPPGWPSSGSIKFEDVVLRYRP+LPPVLHG+SF I P+DKVGIVGRTGAGKSS+LN
Sbjct: 1229 NNRPPPGWPSSGSIKFEDVVLRYRPQLPPVLHGVSFFIHPTDKVGIVGRTGAGKSSLLNA 1288
Query: 956 LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADL 1015
LFRIVE+E+GRILID D+ KFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF EH+DADL
Sbjct: 1289 LFRIVEVEKGRILIDDCDVGKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFGEHNDADL 1348
Query: 1016 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1075
WE+LERAHLKD IRRN LGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA
Sbjct: 1349 WESLERAHLKDTIRRNPLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1408
Query: 1076 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD+IL+LDSGRV E+ +PE LLSNEG
Sbjct: 1409 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDKILVLDSGRVQEFSSPENLLSNEG 1468
Query: 1136 SSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAV 1195
SSFSKMVQSTGAANA+YLRSLVL + + ++++ + GQR+WLASSRWAAAAQ+ALA
Sbjct: 1469 SSFSKMVQSTGAANAEYLRSLVLDNK---RAKDDSHHLQGQRKWLASSRWAAAAQFALAA 1525
Query: 1196 SLTSSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSA 1255
SLTSSHNDLQ LE+ED ++ILK+T DAVVTL+ VLEGKHDKEI ESL +H +S +GW S+
Sbjct: 1526 SLTSSHNDLQSLEIEDDSSILKRTNDAVVTLRSVLEGKHDKEIAESLEEHNISREGWLSS 1585
Query: 1256 LYRMIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1293
LYRM+EGL+VMSRLARNR+ Q DY+ E + DWD+VEM
Sbjct: 1586 LYRMVEGLAVMSRLARNRMQQPDYNFEGNTFDWDNVEM 1623
|
Pump for glutathione S-conjugates. Mediates the transport of S-conjugates such as GSH, S-(2,4-dinitrophenyl)-glutathione (DNP-GS), GSSG, cyanidin 3-glucoside-GS (C3G-GS) and metolachlor-GS (MOC-GS), glucuronides such as 17-beta-estradiol 17-(beta-D-glucuronide) (E(2)17betaG), and of the chlorophyll catabolite such as B.napus nonfluorescent chlorophyll catabolite (Bn-NCC-1). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q9C8G9|AB1C_ARATH ABC transporter C family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2100 bits (5442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1027/1298 (79%), Positives = 1169/1298 (90%), Gaps = 10/1298 (0%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
MQ + PAWIGYIYA SIFVGVVLGVLCEAQYFQNVMRVG+RLRS L+AAVFRKSLR+T+E
Sbjct: 330 MQLNEPAWIGYIYAISIFVGVVLGVLCEAQYFQNVMRVGYRLRSALIAAVFRKSLRLTNE 389
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 120
RK F +GKITNLMTTDAE LQQ+CQ+LHT+WSAPFRII++LVLLY +LGVAS++GAL L
Sbjct: 390 GRKKFQTGKITNLMTTDAESLQQICQSLHTMWSAPFRIIVALVLLYQQLGVASIIGALFL 449
Query: 121 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
V MFP+QT IIS+ QKLTKEGLQRTDKRIGLMNE+LAAMD VKCYAWENSFQSKVQ VR+
Sbjct: 450 VLMFPIQTVIISKTQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRD 509
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
DELSWFRKAQ L+A N FILNSIPVLVTVVSFG+F+LLGGDLTPARAFTSLSLF+VLRFP
Sbjct: 510 DELSWFRKAQLLSAFNMFILNSIPVLVTVVSFGVFSLLGGDLTPARAFTSLSLFSVLRFP 569
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
LFMLPN+ITQ+VNANVSL R+EE L EE++LLPNPP+ G PAISIRNGYFSWDSKA+R
Sbjct: 570 LFMLPNIITQMVNANVSLNRLEEVLSTEERVLLPNPPIEPGQPAISIRNGYFSWDSKADR 629
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
PTL NINLDIP+GSLVA+VG TGEGKTSLISAMLGELP SDA+ +RG+VAYVPQVSWI
Sbjct: 630 PTLSNINLDIPLGSLVAVVGSTGEGKTSLISAMLGELPARSDATVTLRGSVAYVPQVSWI 689
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
FNATVRDNILFG+ F+ +YE+ IDVT+LQHDL+LLPGGD+TEIGERGVNISGGQKQRVS
Sbjct: 690 FNATVRDNILFGAPFDQEKYERVIDVTALQHDLELLPGGDLTEIGERGVNISGGQKQRVS 749
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
MARAVYSNSDV I DDPLSALDAHVG+QVF++CI+ EL TRVLVTNQLHFLSQVD+I+
Sbjct: 750 MARAVYSNSDVCILDDPLSALDAHVGQQVFEKCIKRELGQTTRVLVTNQLHFLSQVDKIL 809
Query: 481 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDN 540
LVHEG VKEEGT+E+L ++G LFQ+LMENAGK+E+Y EE + E VD + KP NG N
Sbjct: 810 LVHEGTVKEEGTYEELCHSGPLFQRLMENAGKVEDYSEENGEAE-VDQTSVKPVENGNAN 868
Query: 541 DLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTET 600
+L K+ +T+ +KEG SVL+K+EERETGVVS+KVL RY++ALGG WVV++L++CY LT+
Sbjct: 869 NLQKDGIETKNSKEGNSVLVKREERETGVVSWKVLERYQNALGGAWVVMMLVICYVLTQV 928
Query: 601 LRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLH 660
RVSSSTWLS WTD + KTHGPLFYN +Y+LLSFGQV VTL NSYWLI+SSLYAAK++H
Sbjct: 929 FRVSSSTWLSEWTDSGTPKTHGPLFYNIVYALLSFGQVSVTLINSYWLIMSSLYAAKKMH 988
Query: 661 DAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIG 720
DAML SILRAPMVFF TNPLGRIINRFAKD+GDIDR VAVFVNMFMG ++QLLST +LIG
Sbjct: 989 DAMLGSILRAPMVFFQTNPLGRIINRFAKDMGDIDRTVAVFVNMFMGSIAQLLSTVILIG 1048
Query: 721 IVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 780
IVST+SLWAIMPLL++FY AYLYYQ+T+RE+KR+DS TRSPVYAQFGEALNGLS+IRAYK
Sbjct: 1049 IVSTLSLWAIMPLLVVFYGAYLYYQNTSREIKRMDSTTRSPVYAQFGEALNGLSSIRAYK 1108
Query: 781 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 840
AYDRMA+ING+SMD NIR+TLVNM ANRWL IRLE++GGLM+WLTA+ AV+QNG A NQ+
Sbjct: 1109 AYDRMAEINGRSMDNNIRFTLVNMAANRWLGIRLEVLGGLMVWLTASLAVMQNGKAANQQ 1168
Query: 841 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 900
A+ASTMGLLLSYAL+ITS LTAVLRLASLAENSLN+VERVGNYIE+PSEAPLVIE+NRPP
Sbjct: 1169 AYASTMGLLLSYALSITSSLTAVLRLASLAENSLNSVERVGNYIEIPSEAPLVIENNRPP 1228
Query: 901 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 960
PGWPSSGSIKFEDVVLRYRPELPPVLHG+SF I P DKVGIVGRTGAGKSS+LN LFRIV
Sbjct: 1229 PGWPSSGSIKFEDVVLRYRPELPPVLHGVSFLISPMDKVGIVGRTGAGKSSLLNALFRIV 1288
Query: 961 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE 1020
ELE+GRILID DI +FGLMDLRK+LGIIPQ+PVLFSGTVRFNLDPFSEH+DADLWE+LE
Sbjct: 1289 ELEKGRILIDECDIGRFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFSEHNDADLWESLE 1348
Query: 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1080
RAHLKD IRRN LGLDA+V+EAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRT
Sbjct: 1349 RAHLKDTIRRNPLGLDAEVTEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1408
Query: 1081 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140
D LIQKTIREEFKSCTMLIIAHRLNTIIDCD++L+LDSG+V E+ +PE LLSN SSFSK
Sbjct: 1409 DVLIQKTIREEFKSCTMLIIAHRLNTIIDCDKVLVLDSGKVQEFSSPENLLSNGESSFSK 1468
Query: 1141 MVQSTGAANAQYLRSLVLGGEAENK-LREEN----KQIDGQRRWLASSRWAAAAQYALAV 1195
MVQSTG ANA+YLRS+ L ENK RE N + ++GQR+W ASSRWAAAAQ+ALAV
Sbjct: 1469 MVQSTGTANAEYLRSITL----ENKRTREANGDDSQPLEGQRKWQASSRWAAAAQFALAV 1524
Query: 1196 SLTSSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSA 1255
SLTSSHNDLQ LE+ED N+ILKKTKDAVVTL+ VLEGKHDKEIE+SLNQ ++S + WW +
Sbjct: 1525 SLTSSHNDLQSLEIEDDNSILKKTKDAVVTLRSVLEGKHDKEIEDSLNQSDISRERWWPS 1584
Query: 1256 LYRMIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1293
LY+M+EGL+VMSRLARNR+ DY+LE +S DWD+VEM
Sbjct: 1585 LYKMVEGLAVMSRLARNRMQHPDYNLEGKSFDWDNVEM 1622
|
Pump for glutathione S-conjugates. Mediates the transport of S-(2,4-dinitrophenyl)-glutathione (DNP-GS), GSSG, cyanidin 3-glucoside-GS (C3G-GS) and metolachlor-GS (MOC-GS). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9C8H0|AB12C_ARATH ABC transporter C family member 12 OS=Arabidopsis thaliana GN=ABCC12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1754 bits (4544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 867/1158 (74%), Positives = 999/1158 (86%), Gaps = 4/1158 (0%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
MQ+ PAW+GY+YAF IFVGV LGVLCEAQYFQNV RVGFRLRSTLVAA+F KSLR+THE
Sbjct: 331 MQEGDPAWVGYVYAFIIFVGVTLGVLCEAQYFQNVWRVGFRLRSTLVAAIFHKSLRLTHE 390
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 120
ARKNFASGK+TN++TTDA LQQ+ Q LH LWSAPFRII+S++LLY +LGVASL G+L+L
Sbjct: 391 ARKNFASGKVTNMITTDANALQQISQQLHGLWSAPFRIIVSMILLYQQLGVASLFGSLIL 450
Query: 121 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
+ P+QT IIS+M+KLTKEGLQ TDKR+G+ NEIL++MD VKCYAWE SF+S++Q +RN
Sbjct: 451 FLLIPLQTLIISKMRKLTKEGLQWTDKRVGITNEILSSMDTVKCYAWEKSFESRIQGIRN 510
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
+ELSWFRKAQ L+A NSFILNSIPV+VTVVSFG+F LLGGDLTPARAFTSLSLFAVLRFP
Sbjct: 511 EELSWFRKAQLLSAFNSFILNSIPVVVTVVSFGVFVLLGGDLTPARAFTSLSLFAVLRFP 570
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
L MLPN+++QVVNANVSL+R+EE LL+EE+IL NPPL G PAISI+NGYFSWDSK +
Sbjct: 571 LNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGTPAISIKNGYFSWDSKTTK 630
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
PTL +INL+IPVG+LVAIVGGTGEGKTSLISAMLGEL S VIRG+VAYVPQVSWI
Sbjct: 631 PTLSDINLEIPVGTLVAIVGGTGEGKTSLISAMLGELSHAETTSVVIRGSVAYVPQVSWI 690
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
FNATVR+NILFGS FE RY +AID T+LQHDLDLLPG D+TEIGERGVNISGGQKQRVS
Sbjct: 691 FNATVRENILFGSDFESERYWRAIDATALQHDLDLLPGRDLTEIGERGVNISGGQKQRVS 750
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
MARAVYSNSDV+IFDDPLSALDAHV QVFD C++ EL GKTRVLVTNQLHFL +D+II
Sbjct: 751 MARAVYSNSDVYIFDDPLSALDAHVAHQVFDSCMKDELRGKTRVLVTNQLHFLPLMDKII 810
Query: 481 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDN 540
LV EGM+KEEGTF +LS +G LF+KLMENAGKM+ E + E + + +
Sbjct: 811 LVSEGMIKEEGTFVELSKSGILFKKLMENAGKMDATQEVNTNDENILKLGPTVTVDVSER 870
Query: 541 DLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTET 600
+L T++ K +SVLIKQEERETG++S+ VL RYK+A+GGLWVV+ILL CY TE
Sbjct: 871 NL----GSTKQGKRRRSVLIKQEERETGIISWNVLMRYKEAVGGLWVVMILLACYLATEV 926
Query: 601 LRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLH 660
LRVSSSTWLS WTDQS+ K + P FY +Y+LL FGQV VT NS+WLI SSL+AA+RLH
Sbjct: 927 LRVSSSTWLSIWTDQSTSKNYSPGFYIVVYALLGFGQVAVTFTNSFWLITSSLHAARRLH 986
Query: 661 DAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIG 720
DAML SILRAPM+FFHTNP GR+INRF+KD+GDIDRNVA +NMFM Q+ QLLSTF LIG
Sbjct: 987 DAMLSSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIG 1046
Query: 721 IVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 780
VST+SLWAIMPLL+LFYAAYLYYQST+REV+RLDS+TRSP+YAQFGEALNGLS+IRAYK
Sbjct: 1047 TVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYK 1106
Query: 781 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 840
AYDRMA INGKSMD NIR+TL N +NRWL IRLE +GG+MIWLTATFAV+QNG+ NQ
Sbjct: 1107 AYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLQNGNTNNQA 1166
Query: 841 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 900
FASTMGLLLSY LNITSLL+ VLR AS AENSLN+VERVGNYI+LPSEA +IE+NRP
Sbjct: 1167 GFASTMGLLLSYTLNITSLLSGVLRQASRAENSLNSVERVGNYIDLPSEATDIIENNRPV 1226
Query: 901 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 960
GWPS GSIKFEDV LRYRP LPPVLHGL+F + PS+KVG+VGRTGAGKSSMLN LFRIV
Sbjct: 1227 CGWPSGGSIKFEDVHLRYRPGLPPVLHGLTFFVSPSEKVGVVGRTGAGKSSMLNALFRIV 1286
Query: 961 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE 1020
E+E+GRI+ID D+AKFGL D+R++L IIPQSPVLFSGTVRFN+DPFSEH+DA LWEAL
Sbjct: 1287 EVEKGRIMIDDCDVAKFGLTDVRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDAGLWEALH 1346
Query: 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1080
RAH+KD I RN GLDA+V E GENFSVGQRQLLSL+RALLRRSKILVLDEATA+VDVRT
Sbjct: 1347 RAHIKDVISRNPFGLDAEVCEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406
Query: 1081 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140
D+LIQ+TIREEFKSCTML+IAHRLNTIIDCD+IL+L SG+VLEYD+P+ELLS + S+F +
Sbjct: 1407 DSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFR 1466
Query: 1141 MVQSTGAANAQYLRSLVL 1158
MV STG ANAQYL +LV
Sbjct: 1467 MVHSTGPANAQYLSNLVF 1484
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9C8H1|AB11C_ARATH ABC transporter C family member 11 OS=Arabidopsis thaliana GN=ABCC11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1723 bits (4462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 842/1158 (72%), Positives = 985/1158 (85%), Gaps = 4/1158 (0%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
M + PAW+GY+YAF IF GV GVLC++QYFQ+V RVGFRLRSTLVAA+F KSLR+T++
Sbjct: 331 MIEGDPAWVGYVYAFLIFFGVTFGVLCQSQYFQHVGRVGFRLRSTLVAAIFHKSLRLTNK 390
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 120
ARKNFASGK+TN++TTDA LQ + + LH LWSAPFRII+S+VLLY +LGVAS+ G+L+L
Sbjct: 391 ARKNFASGKVTNMITTDANALQLIAEQLHGLWSAPFRIIVSMVLLYQQLGVASIFGSLIL 450
Query: 121 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
+ P QT I+ +M+KLTKEGLQ TDKR+G++ EILA+MD VKCYAWE SF+S++Q +RN
Sbjct: 451 FLLIPFQTLIVRKMRKLTKEGLQWTDKRVGIIYEILASMDIVKCYAWEKSFESRIQGIRN 510
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
+ELSWFRKAQ L+A NSFILNS PV+VT+VSFG++ LLGGDLTPARAFTSLSLFAVLR P
Sbjct: 511 EELSWFRKAQLLSAFNSFILNSTPVVVTLVSFGVYVLLGGDLTPARAFTSLSLFAVLRSP 570
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
L LPN+I+Q VNANVSL+R+EE LL+EE+IL NPPL G PAISI+NGYFSWDSK +
Sbjct: 571 LSTLPNLISQAVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSK 630
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
PTL +INL+IPVGSLVAIVGGTGEGKTSLISAMLGEL +S IRG+VAYVPQVSWI
Sbjct: 631 PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVDIRGSVAYVPQVSWI 690
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
FNAT+R+NILFGS FE RY +AIDVT+LQHDLDL PG D TEIGERGVNISGGQKQRVS
Sbjct: 691 FNATLRENILFGSDFESERYWRAIDVTALQHDLDLFPGRDRTEIGERGVNISGGQKQRVS 750
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
MARAVYSNSD++IFDDP SALDAHV QVFD C++ EL GKTRVLVTNQLHFL +DRII
Sbjct: 751 MARAVYSNSDIYIFDDPFSALDAHVAHQVFDSCVKHELKGKTRVLVTNQLHFLPLMDRII 810
Query: 481 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDN 540
LV EGM+KEEG F +LS +G LF+KLMENAGKM+ ++ T D SK +
Sbjct: 811 LVSEGMIKEEGNFAELSKSGTLFKKLMENAGKMDA----TQEVNTNDENISKLGPTVTID 866
Query: 541 DLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTET 600
+ ++ K G+S+L+KQEERETG++S+ V+ RY A+GGLWVV+ILL+CY TE
Sbjct: 867 VSERSLGSIQQGKWGRSMLVKQEERETGIISWDVVMRYNKAVGGLWVVMILLVCYLTTEV 926
Query: 601 LRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLH 660
LRV SSTWLS WTDQS+ K++ P FY +Y+LL FGQV VT NS+WLI SSL+AAKRLH
Sbjct: 927 LRVLSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLH 986
Query: 661 DAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIG 720
DAML+SILRAPM+FF TNP GR+INRF+KD+GDIDRNVA +NMFM Q+ QLLSTF LIG
Sbjct: 987 DAMLNSILRAPMLFFETNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIG 1046
Query: 721 IVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 780
IVST+SLWAIMPLL+LFYA Y+YYQST+REV+RLDS+TRSP+YA FGEALNGLS+IRAYK
Sbjct: 1047 IVSTISLWAIMPLLILFYATYIYYQSTSREVRRLDSVTRSPIYALFGEALNGLSSIRAYK 1106
Query: 781 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 840
AYDRMA INGKSMD NIR+TL + +NRWL IR E +GG+MIWLTATFAV++ G+AENQ
Sbjct: 1107 AYDRMAKINGKSMDNNIRFTLASTSSNRWLTIRSESLGGVMIWLTATFAVLRYGNAENQA 1166
Query: 841 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 900
FASTMGLLLSY LNIT+LL+ VLR AS AENSLN+VERVGNYI+LPSEA +IE+NRP
Sbjct: 1167 VFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPV 1226
Query: 901 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 960
GWPS GSI+FEDV LRYRP LPPVLHGLSF + PS+KVG+VGRTGAGKSSMLN L+RIV
Sbjct: 1227 SGWPSRGSIQFEDVHLRYRPGLPPVLHGLSFFVYPSEKVGVVGRTGAGKSSMLNALYRIV 1286
Query: 961 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE 1020
ELE+GRILID +D+AKFGL DLR++L IIPQSPVLFSGTVRFN+DPFSEH+DADLWEALE
Sbjct: 1287 ELEKGRILIDDYDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALE 1346
Query: 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1080
RAH+KD I RN GLDA+VSE GENFSVGQRQLLSL+RALLRRSKIL LDEATA+VDVRT
Sbjct: 1347 RAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILFLDEATASVDVRT 1406
Query: 1081 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140
D+LIQ+TIREEFKSCTMLIIAHRLNTIIDCD+IL+L SG+VLEYD+P+ELLS + S+F K
Sbjct: 1407 DSLIQRTIREEFKSCTMLIIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFK 1466
Query: 1141 MVQSTGAANAQYLRSLVL 1158
MV STG N QYL +LV
Sbjct: 1467 MVHSTGPENGQYLSNLVF 1484
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q28689|MRP2_RABIT Canalicular multispecific organic anion transporter 1 OS=Oryctolagus cuniculus GN=ABCC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/1205 (40%), Positives = 741/1205 (61%), Gaps = 82/1205 (6%)
Query: 7 AWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFA 66
AW+GYI+A +F ++ +C YF +G + +T++A V++K+L I++ A++ +
Sbjct: 355 AWLGYIFAILLFAVALIQSICLQTYFHMCFNLGMCVGTTVMATVYKKALTISNLAKRQYT 414
Query: 67 SGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPV 126
G+ NLM+ DA++L V +H +WS+ +I++S+ L+ ELG + L G ++V + PV
Sbjct: 415 IGETVNLMSVDAQKLMDVTNFIHLVWSSVLQIVLSIYFLWVELGPSVLAGVGVMVLLIPV 474
Query: 127 QTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWF 186
+ ++ + + + ++ DKR+ +MNEIL+ M +K +AWE SF+ +V N+R EL
Sbjct: 475 NGILATKNRNIQFKNMKYKDKRLRIMNEILSGMKILKYFAWEPSFKDQVHNLRKKELKNL 534
Query: 187 RKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFPLFML 244
R ++ + F+L PVLV+V +F ++ L+ + L +AFTS++LF +LRFP+ ML
Sbjct: 535 RTFAYMQSVVMFLLYLTPVLVSVTTFSVYVLVDSNNILDAEKAFTSITLFNILRFPMSML 594
Query: 245 PNMITQVVNANVSLKRMEEFLLAEE---KILLPNPPLTSGLPAISIRNGYFSWDSKAERP 301
PN+I+ ++ A+VS+ R+E++L ++ + +P A+ F+WD E P
Sbjct: 595 PNVISAMLQASVSVDRLEKYLSGDDLDTSAIQRDPNFDK---AVQFSEASFTWDRNLE-P 650
Query: 302 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIF 361
T+ N+NLDI G LVA+VG G GK+SL+SAMLGE+ V I+GT AYVPQ SWI
Sbjct: 651 TIRNVNLDIMPGQLVAVVGTVGSGKSSLMSAMLGEMENV-HGHITIKGTTAYVPQQSWIQ 709
Query: 362 NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 421
N T++DNILFG+ F+ RY++ ++ +L DL++LPGGD+ EIGE+G+N+SGGQKQR+S+
Sbjct: 710 NGTIKDNILFGAEFDERRYQRVLEACALLPDLEILPGGDLAEIGEKGINLSGGQKQRISL 769
Query: 422 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRI 479
ARA Y NSD++I DDPLSA+DAHVG+ +F++ + G L+GKTR+LVT+ LHFL QVD I
Sbjct: 770 ARASYQNSDIYILDDPLSAVDAHVGKHIFNKVLGPNGLLNGKTRLLVTHSLHFLPQVDEI 829
Query: 480 ILVHEGMVKEEGTFEDL-------SNNGELFQKLMENAGK-------------------- 512
++V G + E+G++ L + N ++F K ++ G+
Sbjct: 830 VVVENGTILEKGSYSSLLAKKGVFAKNLKMFVKHTDSEGEVTVNDGSEEDDDDDSGLISS 889
Query: 513 MEEYVEE-------KEDG-----------ETVDNKTSKPAANGVDNDLPKEASDTRKTKE 554
+EE+ E+ +E+ K+ K + + PKE + K
Sbjct: 890 IEEFPEDSISLTLKRENSLHRTLSRSSRSSGRRLKSLKNSLKAQNGKTPKEEEVVKGQK- 948
Query: 555 GKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLI-LLLCYFLTETLRVSSSTWLSYWT 613
LIK+E ETG V F + +Y A+G W ++ ++ Y L + S+ WLS WT
Sbjct: 949 ----LIKKEFMETGKVKFSIYLKYLQAIG--WCSIVGIIFAYVLNSVAFIGSNLWLSAWT 1002
Query: 614 DQSSLKTHGPLFYNT--------IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 665
S+ T+ Y I+ +L Q L L S+W +A+ LH +L+
Sbjct: 1003 SDSN--TYNGTNYPASQRDLRIGIFGVLGLAQGLTVLVASFWSASGCAHASNILHKQLLN 1060
Query: 666 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTM 725
+ILRAPM FF+T P+GRI+NRFA D+ +D + + +M ++ST ++I + + +
Sbjct: 1061 NILRAPMSFFNTTPIGRIVNRFAGDISTVDDTLPQSLRSWMMCFLAIISTLIMICMATPV 1120
Query: 726 SLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRM 785
I+PL +++ A ++Y +T+R+++RLDS+TRSP+Y+ F E ++GL IRA++ R
Sbjct: 1121 FAVIIIPLAIIYVAVQVFYVATSRQLRRLDSVTRSPIYSHFTETVSGLPVIRAFEHQQRF 1180
Query: 786 ADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFAST 845
N +D N + + +NRWLA RLE+VG L+++ +A V+ +
Sbjct: 1181 LKQNEIGIDTNQKCVSSWITSNRWLAFRLELVGNLVVFSSALMMVIYRDTLS-----GDV 1235
Query: 846 MGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPS 905
+G +LS ALNIT L ++R+ S E ++ AVER+ YI++ +EAP V + RPP GWP
Sbjct: 1236 VGFVLSNALNITQTLNWLVRMTSETETNIVAVERITEYIKVENEAPWVTD-KRPPAGWPH 1294
Query: 906 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 965
G I+F + +RYRPEL VL G++ I +K+G+VGRTGAGKSS+ N LFRI+E G
Sbjct: 1295 KGEIQFSNYQVRYRPELDLVLKGINCDIKSMEKIGVVGRTGAGKSSLTNCLFRILEAAGG 1354
Query: 966 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK 1025
I IDG DIA GL DLR L IIPQ PVLFSG++R NLDPF+ +SD ++W ALE AHLK
Sbjct: 1355 HITIDGIDIASIGLHDLRGKLTIIPQDPVLFSGSLRMNLDPFNNYSDEEIWRALELAHLK 1414
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1085
+ GL +VSEA +N S+GQRQLL L RALLR+SKILVLDEATAAVD+ TD LIQ
Sbjct: 1415 SFVAGLQHGLSREVSEAEDNLSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDHLIQ 1474
Query: 1086 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1145
TIR EF CT++ IAHRL+TI+D D+I++LD+G ++EY +PEELL + G FS M + +
Sbjct: 1475 TTIRNEFSHCTVITIAHRLHTIMDSDKIMVLDNGNIVEYGSPEELLESAG-PFSLMAKES 1533
Query: 1146 GAANA 1150
G N
Sbjct: 1534 GIENV 1538
|
Mediates hepatobiliary excretion of numerous organic anions. Oryctolagus cuniculus (taxid: 9986) |
| >sp|Q63120|MRP2_RAT Canalicular multispecific organic anion transporter 1 OS=Rattus norvegicus GN=Abcc2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 901 bits (2329), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/1196 (40%), Positives = 739/1196 (61%), Gaps = 62/1196 (5%)
Query: 8 WIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFAS 67
W GYI A +F ++ C YFQ+ +G +R+T+++++++K+L +++ ARK +
Sbjct: 354 WFGYICAILMFAVTLIQSFCLQSYFQHCFVLGMCVRTTVMSSIYKKALTLSNLARKQYTI 413
Query: 68 GKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQ 127
G+ NLM+ D+++L + +WS+ +I +S+ L+ ELG + L G ++V + PV
Sbjct: 414 GETVNLMSVDSQKLMDATNYMQLVWSSVIQITLSIFFLWRELGPSILAGVGVMVLLIPVN 473
Query: 128 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFR 187
+ ++++ + + ++ DKR+ +MNEIL+ + +K +AWE SFQ +VQ +R EL
Sbjct: 474 GVLATKIRNIQVQNMKNKDKRLKIMNEILSGIKILKYFAWEPSFQEQVQGIRKKELKNLL 533
Query: 188 KAQFLAACNSFILNSIPVLVTVVSFGMFTLL--GGDLTPARAFTSLSLFAVLRFPLFMLP 245
+ L + FIL P+LV+VV+F ++ L+ L +AFTS++LF +LRFPL MLP
Sbjct: 534 RFGQLQSLLIFILQITPILVSVVTFSVYVLVDSANVLNAEKAFTSITLFNILRFPLSMLP 593
Query: 246 NMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLN 305
+ + ++ A+VS+ R+E +L ++ +++ A+ F+WD E T+ +
Sbjct: 594 MVTSSILQASVSVDRLERYLGGDDLDTSAIRRVSNFDKAVKFSEASFTWDPDLE-ATIQD 652
Query: 306 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATV 365
+NLDI G LVA+VG G GK+SL+SAMLGE+ V I+G+ AYVPQ SWI N T+
Sbjct: 653 VNLDIKPGQLVAVVGTVGSGKSSLVSAMLGEMENV-HGHITIQGSTAYVPQQSWIQNGTI 711
Query: 366 RDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 425
+DNILFGS + +Y++ + +L DL++LPGGD+ EIGE+G+N+SGGQKQRVS+ARA
Sbjct: 712 KDNILFGSEYNEKKYQQVLKACALLPDLEILPGGDMAEIGEKGINLSGGQKQRVSLARAA 771
Query: 426 YSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVH 483
Y ++D++I DDPLSA+DAHVG+ +F++ + G L+GKTR+ VT+ +HFL QVD I+++
Sbjct: 772 YQDADIYILDDPLSAVDAHVGKHIFNKVVGPNGLLAGKTRIFVTHGIHFLPQVDEIVVLG 831
Query: 484 EGMVKEEGTFEDLSNNGELFQK----LMENAGKMEEYV-------EEKEDG-----ETVD 527
+G + E+G++ DL + +F + M+++G E E+ +DG E +
Sbjct: 832 KGTILEKGSYRDLLDKKGVFARNWKTFMKHSGPEGEATVNNDSEAEDDDDGLIPTMEEIP 891
Query: 528 NKTSKPA---------------------ANGVDNDLPKEASDTRKTKEGK---SVLIKQE 563
+ A + N L + + K KE + LIK+E
Sbjct: 892 EDAASLAMRRENSLRRTLSRSSRSSSRRGKSLKNSLKIKNVNVLKEKEKEVEGQKLIKKE 951
Query: 564 ERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQS------- 616
ETG V F + +Y A+ G W +L ++L Y L + S+ WLS WT S
Sbjct: 952 FVETGKVKFSIYLKYLQAV-GWWSILFIILFYGLNNVAFIGSNLWLSAWTSDSDNLNGTN 1010
Query: 617 SLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFH 676
+ +H + ++ L Q + L ++ W I + A+K LH +L +ILRAPM FF
Sbjct: 1011 NSSSHRDMRIG-VFGALGLAQGICLLISTLWSIYACRNASKALHGQLLTNILRAPMRFFD 1069
Query: 677 TNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 736
T P GRI+NRF+ D+ +D + + +M + T V+I + + + I+PL +L
Sbjct: 1070 TTPTGRIVNRFSGDISTVDDLLPQTLRSWMMCFFGIAGTLVMICMATPVFAIIIIPLSIL 1129
Query: 737 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKN 796
+ + ++Y +T+R+++RLDS+T+SP+Y+ F E + GL IRA++ R N K +D N
Sbjct: 1130 YISVQVFYVATSRQLRRLDSVTKSPIYSHFSETVTGLPIIRAFEHQQRFLAWNEKQIDIN 1189
Query: 797 IRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNI 856
+ + +NRWLAIRLE+VG L+++ +A V+ + +G +LS ALNI
Sbjct: 1190 QKCVFSWITSNRWLAIRLELVGNLVVFCSALLLVIYRKTLT-----GDVVGFVLSNALNI 1244
Query: 857 TSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVL 916
T L ++R+ S AE ++ AVER+ YI + +EAP V + RPP WP G I+F + +
Sbjct: 1245 TQTLNWLVRMTSEAETNIVAVERISEYINVENEAPWVTD-KRPPADWPRHGEIQFNNYQV 1303
Query: 917 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 976
RYRPEL VL G++ I +KVG+VGRTGAGKSS+ N LFRI+E G+I+IDG D+A
Sbjct: 1304 RYRPELDLVLKGITCNIKSGEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGIDVAS 1363
Query: 977 FGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 1036
GL DLR+ L IIPQ P+LFSG++R NLDPF+++SD ++W ALE AHL+ + LGL
Sbjct: 1364 IGLHDLRERLTIIPQDPILFSGSLRMNLDPFNKYSDEEVWRALELAHLRSFVSGLQLGLL 1423
Query: 1037 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 1096
++V+E G+N S+GQRQLL L RA+LR+SKILVLDEATAAVD+ TD+LIQ TIR+EF CT
Sbjct: 1424 SEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRKEFSQCT 1483
Query: 1097 MLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQY 1152
++ IAHRL+TI+D D+I++LD+G+++EY +PEELLSN G SF M + G N +
Sbjct: 1484 VITIAHRLHTIMDSDKIMVLDNGKIVEYGSPEELLSNRG-SFYLMAKEAGIENVNH 1538
|
Mediates hepatobiliary excretion of numerous organic anions. Rattus norvegicus (taxid: 10116) |
| >sp|Q92887|MRP2_HUMAN Canalicular multispecific organic anion transporter 1 OS=Homo sapiens GN=ABCC2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/1205 (40%), Positives = 739/1205 (61%), Gaps = 76/1205 (6%)
Query: 3 QDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEAR 62
+D WIGY+ A +F ++ C YFQ ++G ++R+ ++A+V++K+L +++ AR
Sbjct: 353 RDTYLWIGYLCAILLFTAALIQSFCLQCYFQLCFKLGVKVRTAIMASVYKKALTLSNLAR 412
Query: 63 KNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVF 122
K + G+ NLM+ DA++L V +H LWS+ +I++S+ L+ ELG + L G ++V
Sbjct: 413 KEYTVGETVNLMSVDAQKLMDVTNFMHMLWSSVLQIVLSIFFLWRELGPSVLAGVGVMVL 472
Query: 123 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 182
+ P+ + ++ + + + ++ DKR+ +MNEIL+ + +K +AWE SF+ +VQN+R E
Sbjct: 473 VIPINAILSTKSKTIQVKNMKNKDKRLKIMNEILSGIKILKYFAWEPSFRDQVQNLRKKE 532
Query: 183 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFP 240
L L F+ PVLV+VV+F ++ L+ + L +AFTS++LF +LRFP
Sbjct: 533 LKNLLAFSQLQCVVIFVFQLTPVLVSVVTFSVYVLVDSNNILDAQKAFTSITLFNILRFP 592
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGL---PAISIRNGYFSWDSK 297
L MLP MI+ ++ A+VS +R+E++L ++ L + A+ F+W+
Sbjct: 593 LSMLPMMISSMLQASVSTERLEKYLGGDD---LDTSAIRHDCNFDKAMQFSEASFTWEHD 649
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQV 357
+E T+ ++NLDI G LVA++G G GK+SLISAMLGE+ V I+GT AYVPQ
Sbjct: 650 SE-ATVRDVNLDIMAGQLVAVIGPVGSGKSSLISAMLGEMENV-HGHITIKGTTAYVPQQ 707
Query: 358 SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 417
SWI N T++DNILFG+ F RY++ ++ +L DL++LPGGD+ EIGE+G+N+SGGQKQ
Sbjct: 708 SWIQNGTIKDNILFGTEFNEKRYQQVLEACALLPDLEMLPGGDLAEIGEKGINLSGGQKQ 767
Query: 418 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQ 475
R+S+ARA Y N D+++ DDPLSA+DAHVG+ +F++ + G L GKTR+LVT+ +HFL Q
Sbjct: 768 RISLARATYQNLDIYLLDDPLSAVDAHVGKHIFNKVLGPNGLLKGKTRLLVTHSMHFLPQ 827
Query: 476 VDRIILVHEGMVKEEGTFEDL-SNNGELFQKL---MENAGKMEEYV------EEKEDGET 525
VD I+++ G + E+G++ L + GE + L + + G EE EE +D
Sbjct: 828 VDEIVVLGNGTIVEKGSYSALLAKKGEFAKNLKTFLRHTGPEEEATVHDGSEEEDDDYGL 887
Query: 526 VDNKTSKP----------------------AANG-----VDNDLPKEASDTRKTKE---- 554
+ + P +NG + N L ++ K E
Sbjct: 888 ISSVEEIPEDAASITMRRENSFRRTLSRSSRSNGRHLKSLRNSLKTRNVNSLKEDEELVK 947
Query: 555 GKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTD 614
G+ LIK+E ETG V F + Y A+G L+ + ++L + + + S+ WLS WT
Sbjct: 948 GQK-LIKKEFIETGKVKFSIYLEYLQAIG-LFSIFFIILAFVMNSVAFIGSNLWLSAWTS 1005
Query: 615 QSSL--KTHGPLFYNT----IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 668
S + T P +Y L Q + +W ++A+ LH +L++IL
Sbjct: 1006 DSKIFNSTDYPASQRDMRVGVYGALGLAQGIFVFIAHFWSAFGFVHASNILHKQLLNNIL 1065
Query: 669 RAPMVFFHTNPLGRIINRFAKDLGDID----RNVAVFVNMFMGQVSQLLSTFVLIGIVST 724
RAPM FF T P GRI+NRFA D+ +D +++ ++ F+G ++ST V+I + +
Sbjct: 1066 RAPMRFFDTTPTGRIVNRFAGDISTVDDTLPQSLRSWITCFLG----IISTLVMICMATP 1121
Query: 725 MSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 784
+ ++PL +++ + ++Y ST+R+++RLDS+TRSP+Y+ F E ++GL IRA++ R
Sbjct: 1122 VFTIIVIPLGIIYVSVQMFYVSTSRQLRRLDSVTRSPIYSHFSETVSGLPVIRAFEHQQR 1181
Query: 785 MADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFAS 844
N +D N + + +NRWLAIRLE+VG L ++ +A V+ +
Sbjct: 1182 FLKHNEVRIDTNQKCVFSWITSNRWLAIRLELVGNLTVFFSALMMVIYRDTLS-----GD 1236
Query: 845 TMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 904
T+G +LS ALNIT L ++R+ S E ++ AVER+ Y ++ +EAP V + RPPP WP
Sbjct: 1237 TVGFVLSNALNITQTLNWLVRMTSEIETNIVAVERITEYTKVENEAPWVTD-KRPPPDWP 1295
Query: 905 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
S G I+F + +RYRPEL VL G++ I +K+G+VGRTGAGKSS+ N LFRI+E
Sbjct: 1296 SKGKIQFNNYQVRYRPELDLVLRGITCDIGSMEKIGVVGRTGAGKSSLTNCLFRILEAAG 1355
Query: 965 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL 1024
G+I+IDG DIA GL DLR+ L IIPQ P+LFSG++R NLDPF+ +SD ++W+ALE AHL
Sbjct: 1356 GQIIIDGVDIASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKALELAHL 1415
Query: 1025 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1084
K + LGL +V+EAG N S+GQRQLL L RALLR+SKILVLDEATAAVD+ TD LI
Sbjct: 1416 KSFVASLQLGLSHEVTEAGGNLSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDNLI 1475
Query: 1085 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1144
Q TI+ EF CT++ IAHRL+TI+D D++++LD+G+++E +PEELL G F M +
Sbjct: 1476 QTTIQNEFAHCTVITIAHRLHTIMDSDKVMVLDNGKIIECGSPEELLQIPG-PFYFMAKE 1534
Query: 1145 TGAAN 1149
G N
Sbjct: 1535 AGIEN 1539
|
Mediates hepatobiliary excretion of numerous organic anions. May function as a cellular cisplatin transporter. Homo sapiens (taxid: 9606) |
| >sp|Q5F364|MRP1_CHICK Multidrug resistance-associated protein 1 OS=Gallus gallus GN=ABCC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/1187 (40%), Positives = 720/1187 (60%), Gaps = 57/1187 (4%)
Query: 3 QDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEAR 62
+ P W GY Y +FV L L QYF G RL++ +V ++RK+L IT+ AR
Sbjct: 355 KSAPNWQGYFYTGLLFVCACLQTLILHQYFHICFVTGMRLKTAIVGVIYRKALVITNSAR 414
Query: 63 KNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVF 122
K G+I NLM+ DA++ + ++ +WSAP ++I++L LL+ LG + L G +++
Sbjct: 415 KTSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYLLWRNLGPSVLAGVAVMIL 474
Query: 123 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 182
+ P+ + + + ++ D RI LMNEIL + +K YAWE +F+ KV +R E
Sbjct: 475 LVPINAVMAMKTKTYQVAQMKSKDNRIKLMNEILNGIKVLKLYAWELAFREKVLEIRQKE 534
Query: 183 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFP 240
L +K+ +LAA +F P LV + +F ++ + + L +AF SL+LF +LRFP
Sbjct: 535 LKVLKKSAYLAAMGTFTWVCAPFLVALSTFAVYVKVNKNNILDAQKAFVSLALFNILRFP 594
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP----PLTSGLPAISIRNGYFSWDS 296
L +LP +I+ +V A+VSLKR+ FL EE L P+ P+T+ +I ++N FSW S
Sbjct: 595 LNILPMVISSIVEASVSLKRLRVFLSHEE--LDPDSIIRGPITNAEGSIVVKNATFSW-S 651
Query: 297 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ 356
K + P+L +IN +P GSL+A+VG G GK+SL+SA+LGE+ + V++G++AYVPQ
Sbjct: 652 KTDPPSLNSINFTVPEGSLIAVVGQVGCGKSSLLSALLGEMDK-KEGYVVVKGSIAYVPQ 710
Query: 357 VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 416
+WI NAT+ DNI+FG +RY++ I+ +L DL++LP GD TEIGE+GVN+SGGQK
Sbjct: 711 QAWIQNATLEDNIIFGREMNESRYKRVIEACALLPDLEILPMGDRTEIGEKGVNLSGGQK 770
Query: 417 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLS 474
QRVS+ARAVY N+D ++FDDPLSA+DAHVG+ +F++ I +G L KTRVLVT+ +++L
Sbjct: 771 QRVSLARAVYCNADTYLFDDPLSAVDAHVGKHIFEKVIGPKGILKNKTRVLVTHAVNYLP 830
Query: 475 QVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPA 534
Q+D I+++ +G + E G++++L F + + E+ +E D + K KP
Sbjct: 831 QMDTILVMTDGEISEMGSYQELLKQDGAFAEFLRTYANAEQSMES-SDASSPSGKEGKPV 889
Query: 535 ANGV----------DNDLPKEASDTRKTKEGKS-------------------VLIKQEER 565
NGV L ++ +R+T GKS L + +
Sbjct: 890 ENGVLVNDATGKLMHRQLSNSSTYSRET--GKSQHQSSTAELQKPLAEKNSWKLTEADTA 947
Query: 566 ETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF 625
+TG V V Y A+G L++ + + + ++S+ WLS WTD + +G
Sbjct: 948 KTGRVKATVYWEYMKAIG-LYISFLSVFLFMCNHIASLASNYWLSLWTDDPVV--NGTQQ 1004
Query: 626 YNTI----YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLG 681
Y + Y L Q + S + I ++A++ LH +LH++LR+PM FF P G
Sbjct: 1005 YTNVRLGVYGALGISQGIAVFGYSMAVSIGGIFASRHLHLDLLHNVLRSPMSFFERTPSG 1064
Query: 682 RIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 741
+++RF+K++ ID + + MFMG ++ ++I + + ++ I PL L++
Sbjct: 1065 NLVSRFSKEIDTIDSTIPPIIKMFMGSTFNVIGACIIILLATPIAAVVIPPLGLVYLLVQ 1124
Query: 742 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTL 801
+Y +T+R++KRL+S++RSPVY+ F E L G+S IRA++ R N +D+N +
Sbjct: 1125 RFYVATSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQKRFIKQNDMKVDENQKAYY 1184
Query: 802 VNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLT 861
++ ANRWLA+RLE VG ++ A FAV+ A N+ + +GL +SY+L IT+ L
Sbjct: 1185 PSIVANRWLAVRLEFVGNCIVLFAALFAVI----ARNKLS-PGLIGLSVSYSLQITAYLN 1239
Query: 862 AVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE 921
++R+ S E ++ AVERV Y E+ EA IE P WP G ++F LRYR +
Sbjct: 1240 WLVRMTSDLETNIVAVERVKEYAEMEKEAEWSIEETAPASTWPQEGKVEFRGFGLRYRED 1299
Query: 922 LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 981
L VL ++ TI +KVGIVGRTGAGKSS+ LFRI E G I+IDG +IAK GL D
Sbjct: 1300 LDLVLKNINITINGGEKVGIVGRTGAGKSSLTLGLFRINEAAEGEIIIDGINIAKIGLHD 1359
Query: 982 LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 1041
LR + IIPQ P+LFSG++R NLDPF +HSD D+W +LE AHLK+ + L+ + SE
Sbjct: 1360 LRFKITIIPQDPILFSGSLRMNLDPFDQHSDEDIWRSLELAHLKNFVSSLPDKLNHECSE 1419
Query: 1042 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 1101
GEN SVGQRQL+ L+RALLR+SKILVLDEATAAVD+ TD LIQ TI+ +F+ CT+L IA
Sbjct: 1420 GGENLSVGQRQLVCLARALLRKSKILVLDEATAAVDLETDNLIQSTIKSQFEECTVLTIA 1479
Query: 1102 HRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAA 1148
HRLNTI+D R+L+LD G V+E D+P+ LL +G +S M + +G A
Sbjct: 1480 HRLNTIMDYTRVLVLDRGEVVECDSPDNLLQAKGLFYS-MAKDSGLA 1525
|
Mediates ATP-dependent export of organic anions and drugs from the cytoplasm. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Gallus gallus (taxid: 9031) |
| >sp|Q8VI47|MRP2_MOUSE Canalicular multispecific organic anion transporter 1 OS=Mus musculus GN=Abcc2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/1200 (40%), Positives = 750/1200 (62%), Gaps = 62/1200 (5%)
Query: 4 DGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARK 63
D W+GYIYA +F ++ YFQ +G +R+T++A+V++K+L +++ AR+
Sbjct: 352 DSYPWVGYIYAILMFSVTLIQSFFLQCYFQFCFVLGMTVRTTIIASVYKKALTLSNLARR 411
Query: 64 NFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFM 123
+ G+ NLM+ D+++L V +H LWS+ +I +S+ L+ ELG + L G L+V +
Sbjct: 412 QYTIGETVNLMSVDSQKLMDVTNYIHLLWSSVLQIALSIFFLWRELGPSILAGVGLMVLL 471
Query: 124 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDEL 183
PV + ++++K+ + ++ DKR+ +MNEIL+ + +K +AWE SF+ +V ++R EL
Sbjct: 472 VPVNGVLATKIRKIQVQNMKNKDKRLKIMNEILSGIKILKYFAWEPSFKEQVNSIRKKEL 531
Query: 184 SWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFPL 241
+ L FIL+ P LV+V++F ++ L+ L +AFTS++LF +LRFPL
Sbjct: 532 RNLLRFSQLQTILIFILHLTPTLVSVITFSVYVLVDSQNVLNAEKAFTSITLFNILRFPL 591
Query: 242 FMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERP 301
MLP +I+ V+ A+VS+ R+E++L +++ L + A+ F+WD E
Sbjct: 592 AMLPMVISSVIQASVSVDRLEQYLGSDDLDLSAIRHVCHFDKAVQFSEASFTWDRDLE-A 650
Query: 302 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIF 361
T+ ++NLDI G LVA+VG G GK+SLISAMLGE+ V I+G++AYVPQ +WI
Sbjct: 651 TIQDVNLDIKPGQLVAVVGTVGSGKSSLISAMLGEMENV-HGHITIKGSIAYVPQQAWIQ 709
Query: 362 NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 421
N T++DNILFGS ++ +Y++ I+ +L DL++LPGGD+ EIGE+G+N+SGGQK RVS+
Sbjct: 710 NGTIKDNILFGSEYDEKKYQRVIEACALLPDLEMLPGGDMAEIGEKGINLSGGQKHRVSL 769
Query: 422 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRI 479
ARA Y ++D++I DDPLSA+D HVG+ +F++ + G LSGKTR+LVT+ +HFL QVD I
Sbjct: 770 ARATYQDADIYILDDPLSAVDTHVGKHIFNKVVGPNGLLSGKTRILVTHGIHFLPQVDEI 829
Query: 480 ILVHEGMVKEEGTFEDLSNNGELFQK----LMENAGKMEEYV----EEKEDGE-----TV 526
+++ +G + E+G++ DL + +F K M+++G E E+EDG+ TV
Sbjct: 830 VVLGKGTILEKGSYSDLMDKKGVFAKNWKTFMKHSGPEGEATVDNDSEEEDGDCGLIPTV 889
Query: 527 DNKTSKPAA------------------------NGVDNDLPKEASDTRKTKE----GKSV 558
+ A+ + + L ++ + KE G+
Sbjct: 890 EEIPDDAASLTMRRENSLRRTLSRSSRSGSRRGKSLKSSLKIKSVNALNKKEEVVKGQK- 948
Query: 559 LIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSL 618
LIK+E ETG V F + +Y A+G W +L +++ Y L + ++ WLS WT S
Sbjct: 949 LIKKEFVETGKVKFSIYLKYLQAVG-WWSLLFIVIFYVLNYVAFIGTNLWLSAWTSDSEK 1007
Query: 619 KT---HGPLFYNT---IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPM 672
+ + P + ++ L Q + L++S W I + A+K LH +L +ILRAPM
Sbjct: 1008 QNGTDNSPSQRDMRIGVFGALGIAQGIFLLSSSLWSIYACRNASKTLHRQLLTNILRAPM 1067
Query: 673 VFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMP 732
FF T P GRI+NRFA D+ +D + + ++ ++ST V+I + + + + I+P
Sbjct: 1068 SFFDTTPTGRIVNRFAGDISTVDDTLPQTLRSWLLCFFGIVSTLVMICMATPIFIIIIIP 1127
Query: 733 LLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKS 792
L +L+ + ++Y +T+R+++RLDS+T+SP+Y+ F E ++GL IRA++ R + K
Sbjct: 1128 LSILYVSVQVFYVATSRQLRRLDSVTKSPIYSHFSETVSGLPVIRAFEHQQRFLANSEKQ 1187
Query: 793 MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSY 852
+D N + + +NRWLAIRLE+VG L+++ +A V+ S T+G +LS
Sbjct: 1188 IDTNQKCVFSWITSNRWLAIRLELVGNLIVFCSALLLVIYKNSLT-----GDTVGFVLSN 1242
Query: 853 ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFE 912
ALNIT L ++R+ S E ++ AVER+ YI + +EAP V + +PP WP G I+F
Sbjct: 1243 ALNITQTLNWLVRMTSEVETNIVAVERINEYINVDNEAPWVTD-KKPPADWPKKGEIQFN 1301
Query: 913 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 972
+ +RYRPEL VL G++ I ++KVG+VGRTGAGKSS+ N LFRI+E G+I+IDG
Sbjct: 1302 NYQVRYRPELDLVLKGITCNIKSTEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGI 1361
Query: 973 DIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 1032
DIA GL DLR L IIPQ P+LFSG +R NLDPF+++SD ++W ALE AHLK +
Sbjct: 1362 DIASIGLHDLRGRLTIIPQDPILFSGNLRMNLDPFNKYSDEEIWRALELAHLKSFVAGLQ 1421
Query: 1033 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 1092
LGL +V+E G+N S+GQRQLL L RA+LR+SKILVLDEATAAVD+ TD+LIQ TIR EF
Sbjct: 1422 LGLLHEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRNEF 1481
Query: 1093 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQY 1152
CT++ IAHRL+TI+D D+I++LDSG+++EY +PEELLSN G F M + G + +
Sbjct: 1482 SQCTVITIAHRLHTIMDSDKIMVLDSGKIVEYGSPEELLSNMG-PFYLMAKEAGIESVNH 1540
|
Mediates hepatobiliary excretion of numerous organic anions. May function as a cellular cisplatin transporter. Mus musculus (taxid: 10090) |
| >sp|O35379|MRP1_MOUSE Multidrug resistance-associated protein 1 OS=Mus musculus GN=Abcc1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/1181 (40%), Positives = 716/1181 (60%), Gaps = 48/1181 (4%)
Query: 3 QDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEAR 62
++ P W GY Y +FV L L QYF G R+++ +V AV+RK+L IT+ AR
Sbjct: 357 REAPDWQGYFYTALLFVSACLQTLALHQYFHICFVSGMRIKTAVVGAVYRKALLITNAAR 416
Query: 63 KNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVF 122
K+ G+I NLM+ DA++ + ++ +WSAP ++I++L L+ LG + L G +++
Sbjct: 417 KSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLSLGPSVLAGVAVMIL 476
Query: 123 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 182
M P+ + + + ++ D RI LMNEIL + +K YAWE +FQ KV ++R +E
Sbjct: 477 MVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFQDKVMSIRQEE 536
Query: 183 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLG--GDLTPARAFTSLSLFAVLRFP 240
L +K+ +LAA +F P LV + +F +F + L +AF SL+LF +LRFP
Sbjct: 537 LKVLKKSAYLAAVGTFTWVCTPFLVALSTFAVFVTVDERNILDAKKAFVSLALFNILRFP 596
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP----PLTSGLP-AISIRNGYFSWD 295
L +LP +I+ +V A+VSLKR+ FL EE L P+ + SG +I+++N F+W
Sbjct: 597 LNILPMVISSIVQASVSLKRLRIFLSHEE--LEPDSIERRSIKSGEGNSITVKNATFTW- 653
Query: 296 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP 355
++ E PTL I IP G+LVA+VG G GK+SL+SA+L E+ V + ++G+VAYVP
Sbjct: 654 ARGEPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EGHVTLKGSVAYVP 712
Query: 356 QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 415
Q +WI N ++R+NILFG + Y+ ++ +L DL++LP GD TEIGE+GVN+SGGQ
Sbjct: 713 QQAWIQNDSLRENILFGHPLQENYYKAVMEACALLPDLEILPSGDRTEIGEKGVNLSGGQ 772
Query: 416 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFL 473
KQRVS+ARAVYSNSD+++FDDPLSA+DAHVG+ +F++ + G L KTR+LVT+ + +L
Sbjct: 773 KQRVSLARAVYSNSDIYLFDDPLSAVDAHVGKHIFEKVVGPMGLLKNKTRILVTHGISYL 832
Query: 474 SQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKP 533
QVD II++ G + E G++++L + F + + E+ + ++D + K SKP
Sbjct: 833 PQVDVIIVMSGGKISEMGSYQELLDRDGAFAEFLRTYANAEQDLASEDDSVSGSGKESKP 892
Query: 534 AANG------VDNDLPKEASDTRK-------------------TKEGKSVLIKQEERETG 568
NG V L + S++ KE L++ ++ +TG
Sbjct: 893 VENGMLVTDTVGKHLQRHLSNSSSHSGDTSQQHSSIAELQKAGAKEETWKLMEADKAQTG 952
Query: 569 VVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL---F 625
V V Y A+G L++ + + + ++S+ WLS WTD + F
Sbjct: 953 QVQLSVYWNYMKAIG-LFITFLSIFLFLCNHVSALASNYWLSLWTDDPPVVNGTQANRNF 1011
Query: 626 YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIIN 685
++Y L Q S + I ++A++RLH +L+++LR+PM FF P G ++N
Sbjct: 1012 RLSVYGALGILQGAAIFGYSMAVSIGGIFASRRLHLDLLYNVLRSPMSFFERTPSGNLVN 1071
Query: 686 RFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 745
RF+K+L +D + + MFMG + ++ ++I + + ++ I PL L+++ +Y
Sbjct: 1072 RFSKELDTVDSMIPQVIKMFMGSLFSVIGAVIIILLATPIAAVIIPPLGLVYFFVQRFYV 1131
Query: 746 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 805
+++R++KRL+S++RSPVY+ F E L G+S IRA++ +R + +D+N + ++
Sbjct: 1132 ASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIV 1191
Query: 806 ANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLR 865
ANRWLA+RLE VG ++ A FAV+ S A +GL +SY+L IT+ L ++R
Sbjct: 1192 ANRWLAVRLECVGNCIVLFAALFAVISRHSLS-----AGLVGLSVSYSLQITAYLNWLVR 1246
Query: 866 LASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPV 925
++S E ++ AVER+ Y E EAP I+ PP WP SG ++F D LRYR +L V
Sbjct: 1247 MSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSTWPHSGRVEFRDYCLRYREDLDLV 1306
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 985
L ++ TI +KVGIVGRTGAGKSS+ LFRI E G I+IDG +IAK GL +LR
Sbjct: 1307 LKHINVTIEGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGVNIAKIGLHNLRFK 1366
Query: 986 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1045
+ IIPQ PVLFSG++R NLDPFS++SD ++W ALE AHLK + L+ + +E GEN
Sbjct: 1367 ITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWMALELAHLKGFVSALPDKLNHECAEGGEN 1426
Query: 1046 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1105
SVGQRQL+ L+RALLR++KILVLDEATAAVD+ TD LIQ TIR +F+ CT+L IAHRLN
Sbjct: 1427 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLN 1486
Query: 1106 TIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1146
TI+D R+++LD G V E P ELL G F M + G
Sbjct: 1487 TIMDYTRVIVLDKGEVRECGAPSELLQQRG-IFYSMAKDAG 1526
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1293 | ||||||
| 225443996 | 1623 | PREDICTED: ABC transporter C family memb | 0.999 | 0.796 | 0.872 | 0.0 | |
| 359483925 | 1616 | PREDICTED: ABC transporter C family memb | 0.999 | 0.799 | 0.872 | 0.0 | |
| 224116630 | 1617 | multidrug resistance protein ABC transpo | 0.999 | 0.799 | 0.858 | 0.0 | |
| 255571320 | 1569 | mgatp-energized glutathione s-conjugate | 1.0 | 0.824 | 0.860 | 0.0 | |
| 356555514 | 1620 | PREDICTED: ABC transporter C family memb | 0.996 | 0.795 | 0.837 | 0.0 | |
| 356549118 | 1620 | PREDICTED: ABC transporter C family memb | 0.996 | 0.795 | 0.837 | 0.0 | |
| 171854661 | 1617 | putative multidrug resistance-associated | 0.994 | 0.795 | 0.822 | 0.0 | |
| 297823253 | 1623 | multidrug resistance-associated protein | 0.996 | 0.794 | 0.815 | 0.0 | |
| 15226801 | 1623 | ABC transporter C family member 2 [Arabi | 0.996 | 0.794 | 0.815 | 0.0 | |
| 2440015 | 1623 | multidrug resistance-associated protein | 0.996 | 0.794 | 0.812 | 0.0 |
| >gi|225443996|ref|XP_002280819.1| PREDICTED: ABC transporter C family member 2 isoform 1 [Vitis vinifera] gi|297740795|emb|CBI30977.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2286 bits (5924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1129/1294 (87%), Positives = 1219/1294 (94%), Gaps = 2/1294 (0%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
MQQ PAWIGYIYAFSIFVGVV GVL EAQYFQNVMRVGFR+RSTLVAAVFRKSL++THE
Sbjct: 331 MQQGDPAWIGYIYAFSIFVGVVFGVLFEAQYFQNVMRVGFRVRSTLVAAVFRKSLKLTHE 390
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 120
R+ FASGKITNLMTTDAE LQQ+CQ+LHTLWSAPFRIII++VLLY +LGVASLLGAL+L
Sbjct: 391 GRRQFASGKITNLMTTDAEALQQICQSLHTLWSAPFRIIIAMVLLYQQLGVASLLGALML 450
Query: 121 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
V +FP+QT +ISRMQKL+KEGLQRTDKRIGLMNEILAAMD VKCYAWENSFQSKVQ+VRN
Sbjct: 451 VLLFPIQTVVISRMQKLSKEGLQRTDKRIGLMNEILAAMDTVKCYAWENSFQSKVQSVRN 510
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
+ELSWFRKA FL A N F+LNSIPV+V V+SFGMFTLLGGDLTPARAFTSLSLFAVLRFP
Sbjct: 511 EELSWFRKASFLGAFNVFMLNSIPVVVIVISFGMFTLLGGDLTPARAFTSLSLFAVLRFP 570
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
LFMLPN+ITQ VNANVSLKR+EE LAEE+ILLPNPPL GLPAISI+NGYFSWDSKA+R
Sbjct: 571 LFMLPNIITQAVNANVSLKRLEELFLAEERILLPNPPLEPGLPAISIKNGYFSWDSKADR 630
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
PTL N+NLDIPVG LVAIVGGTGEGKTSL+SAMLGELPP+SDASAVIRGTVAYVPQVSWI
Sbjct: 631 PTLSNVNLDIPVGGLVAIVGGTGEGKTSLVSAMLGELPPMSDASAVIRGTVAYVPQVSWI 690
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
FNATVR NILFGS FE ARYEKAIDVT+LQHDLDLLPGGD+TEIGERGVNISGGQKQRVS
Sbjct: 691 FNATVRGNILFGSPFEAARYEKAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVS 750
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
MARAVYSNSDV+IFDDPLSALDAHVGRQVFDRCI+GEL GKTRVLVTNQLHFLSQVDRII
Sbjct: 751 MARAVYSNSDVYIFDDPLSALDAHVGRQVFDRCIKGELRGKTRVLVTNQLHFLSQVDRII 810
Query: 481 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDN 540
LVHEGMVKEEGTFE+LSNNG +FQKLMENAGKMEEYVEE E +D+KTSKP ANGV +
Sbjct: 811 LVHEGMVKEEGTFEELSNNGMMFQKLMENAGKMEEYVEENGAEENIDDKTSKPVANGVVD 870
Query: 541 DLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTET 600
LP +S+T K KEGKSVLIKQEERETGVVS+KVL RYK+ALGGLWVV+IL +CY LTET
Sbjct: 871 KLPNNSSNTSKPKEGKSVLIKQEERETGVVSWKVLVRYKNALGGLWVVMILFMCYILTET 930
Query: 601 LRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLH 660
LRVSSSTWLS WTDQ +THGP +YN IY++LSFGQVLVTLANSYWLI+SSLYAAKRLH
Sbjct: 931 LRVSSSTWLSQWTDQGGSRTHGPGYYNLIYAMLSFGQVLVTLANSYWLIMSSLYAAKRLH 990
Query: 661 DAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIG 720
DAML SILRAPM+FFHTNP+GRIINRFAKDLGDIDRNVAVFVNMF+GQ+SQLLSTFVLIG
Sbjct: 991 DAMLGSILRAPMLFFHTNPIGRIINRFAKDLGDIDRNVAVFVNMFLGQISQLLSTFVLIG 1050
Query: 721 IVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 780
IVSTMSLWAIMPLL+LFY+AYLYYQ+TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK
Sbjct: 1051 IVSTMSLWAIMPLLVLFYSAYLYYQNTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 1110
Query: 781 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 840
AYDRMADING+SMD NIRYTLVNM +NRWLAIRLE +GGLMIWLTATFAV+QN AENQ+
Sbjct: 1111 AYDRMADINGQSMDNNIRYTLVNMSSNRWLAIRLEALGGLMIWLTATFAVMQNERAENQQ 1170
Query: 841 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 900
AFASTMGLLLSYALNITSLLT VLRLASLAENSLN+VERVG+YIELPSEAPLVIESNRPP
Sbjct: 1171 AFASTMGLLLSYALNITSLLTGVLRLASLAENSLNSVERVGSYIELPSEAPLVIESNRPP 1230
Query: 901 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 960
P WPSSGSIKFEDVVLRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIV
Sbjct: 1231 PAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTISPSDKVGIVGRTGAGKSSMLNALFRIV 1290
Query: 961 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE 1020
ELERGRILID DI+KFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALE
Sbjct: 1291 ELERGRILIDDCDISKFGLRDLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALE 1350
Query: 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1080
RAHLKD IRRNSLGLDA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRT
Sbjct: 1351 RAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1410
Query: 1081 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140
DALIQKTIREEFKSCTMLIIAHRLNTIIDCDR+LLLD+GRVLEYDTPEELLSN+ S+FSK
Sbjct: 1411 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRVLLLDAGRVLEYDTPEELLSNDRSAFSK 1470
Query: 1141 MVQSTGAANAQYLRSLVLGGEAENKL-REENKQIDGQRRWLASSRWAAAAQYALAVSLTS 1199
MVQSTGAANA+YLRSLVLGGE ENKL RE+N+++DGQRRWLASSRW AAAQ+ALAVSLTS
Sbjct: 1471 MVQSTGAANAEYLRSLVLGGEGENKLGREDNRRLDGQRRWLASSRWTAAAQFALAVSLTS 1530
Query: 1200 SHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRM 1259
S NDLQ+LE+ED+N+ILKKTKDAV+TLQGVLEGKHDK IEE+LNQ++VS DGWWS+LYRM
Sbjct: 1531 SQNDLQQLEIEDENSILKKTKDAVITLQGVLEGKHDKVIEETLNQYQVSRDGWWSSLYRM 1590
Query: 1260 IEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1293
IEGL+VMSRLARNRL QS+ E+RSIDWD +EM
Sbjct: 1591 IEGLAVMSRLARNRL-QSENGFEDRSIDWDRIEM 1623
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483925|ref|XP_003633036.1| PREDICTED: ABC transporter C family member 2 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2285 bits (5922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1129/1294 (87%), Positives = 1219/1294 (94%), Gaps = 2/1294 (0%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
MQQ PAWIGYIYAFSIFVGVV GVL EAQYFQNVMRVGFR+RSTLVAAVFRKSL++THE
Sbjct: 324 MQQGDPAWIGYIYAFSIFVGVVFGVLFEAQYFQNVMRVGFRVRSTLVAAVFRKSLKLTHE 383
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 120
R+ FASGKITNLMTTDAE LQQ+CQ+LHTLWSAPFRIII++VLLY +LGVASLLGAL+L
Sbjct: 384 GRRQFASGKITNLMTTDAEALQQICQSLHTLWSAPFRIIIAMVLLYQQLGVASLLGALML 443
Query: 121 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
V +FP+QT +ISRMQKL+KEGLQRTDKRIGLMNEILAAMD VKCYAWENSFQSKVQ+VRN
Sbjct: 444 VLLFPIQTVVISRMQKLSKEGLQRTDKRIGLMNEILAAMDTVKCYAWENSFQSKVQSVRN 503
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
+ELSWFRKA FL A N F+LNSIPV+V V+SFGMFTLLGGDLTPARAFTSLSLFAVLRFP
Sbjct: 504 EELSWFRKASFLGAFNVFMLNSIPVVVIVISFGMFTLLGGDLTPARAFTSLSLFAVLRFP 563
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
LFMLPN+ITQ VNANVSLKR+EE LAEE+ILLPNPPL GLPAISI+NGYFSWDSKA+R
Sbjct: 564 LFMLPNIITQAVNANVSLKRLEELFLAEERILLPNPPLEPGLPAISIKNGYFSWDSKADR 623
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
PTL N+NLDIPVG LVAIVGGTGEGKTSL+SAMLGELPP+SDASAVIRGTVAYVPQVSWI
Sbjct: 624 PTLSNVNLDIPVGGLVAIVGGTGEGKTSLVSAMLGELPPMSDASAVIRGTVAYVPQVSWI 683
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
FNATVR NILFGS FE ARYEKAIDVT+LQHDLDLLPGGD+TEIGERGVNISGGQKQRVS
Sbjct: 684 FNATVRGNILFGSPFEAARYEKAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVS 743
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
MARAVYSNSDV+IFDDPLSALDAHVGRQVFDRCI+GEL GKTRVLVTNQLHFLSQVDRII
Sbjct: 744 MARAVYSNSDVYIFDDPLSALDAHVGRQVFDRCIKGELRGKTRVLVTNQLHFLSQVDRII 803
Query: 481 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDN 540
LVHEGMVKEEGTFE+LSNNG +FQKLMENAGKMEEYVEE E +D+KTSKP ANGV +
Sbjct: 804 LVHEGMVKEEGTFEELSNNGMMFQKLMENAGKMEEYVEENGAEENIDDKTSKPVANGVVD 863
Query: 541 DLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTET 600
LP +S+T K KEGKSVLIKQEERETGVVS+KVL RYK+ALGGLWVV+IL +CY LTET
Sbjct: 864 KLPNNSSNTSKPKEGKSVLIKQEERETGVVSWKVLVRYKNALGGLWVVMILFMCYILTET 923
Query: 601 LRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLH 660
LRVSSSTWLS WTDQ +THGP +YN IY++LSFGQVLVTLANSYWLI+SSLYAAKRLH
Sbjct: 924 LRVSSSTWLSQWTDQGGSRTHGPGYYNLIYAMLSFGQVLVTLANSYWLIMSSLYAAKRLH 983
Query: 661 DAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIG 720
DAML SILRAPM+FFHTNP+GRIINRFAKDLGDIDRNVAVFVNMF+GQ+SQLLSTFVLIG
Sbjct: 984 DAMLGSILRAPMLFFHTNPIGRIINRFAKDLGDIDRNVAVFVNMFLGQISQLLSTFVLIG 1043
Query: 721 IVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 780
IVSTMSLWAIMPLL+LFY+AYLYYQ+TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK
Sbjct: 1044 IVSTMSLWAIMPLLVLFYSAYLYYQNTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 1103
Query: 781 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 840
AYDRMADING+SMD NIRYTLVNM +NRWLAIRLE +GGLMIWLTATFAV+QN AENQ+
Sbjct: 1104 AYDRMADINGQSMDNNIRYTLVNMSSNRWLAIRLEALGGLMIWLTATFAVMQNERAENQQ 1163
Query: 841 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 900
AFASTMGLLLSYALNITSLLT VLRLASLAENSLN+VERVG+YIELPSEAPLVIESNRPP
Sbjct: 1164 AFASTMGLLLSYALNITSLLTGVLRLASLAENSLNSVERVGSYIELPSEAPLVIESNRPP 1223
Query: 901 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 960
P WPSSGSIKFEDVVLRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIV
Sbjct: 1224 PAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTISPSDKVGIVGRTGAGKSSMLNALFRIV 1283
Query: 961 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE 1020
ELERGRILID DI+KFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALE
Sbjct: 1284 ELERGRILIDDCDISKFGLRDLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALE 1343
Query: 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1080
RAHLKD IRRNSLGLDA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRT
Sbjct: 1344 RAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1403
Query: 1081 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140
DALIQKTIREEFKSCTMLIIAHRLNTIIDCDR+LLLD+GRVLEYDTPEELLSN+ S+FSK
Sbjct: 1404 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRVLLLDAGRVLEYDTPEELLSNDRSAFSK 1463
Query: 1141 MVQSTGAANAQYLRSLVLGGEAENKL-REENKQIDGQRRWLASSRWAAAAQYALAVSLTS 1199
MVQSTGAANA+YLRSLVLGGE ENKL RE+N+++DGQRRWLASSRW AAAQ+ALAVSLTS
Sbjct: 1464 MVQSTGAANAEYLRSLVLGGEGENKLGREDNRRLDGQRRWLASSRWTAAAQFALAVSLTS 1523
Query: 1200 SHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRM 1259
S NDLQ+LE+ED+N+ILKKTKDAV+TLQGVLEGKHDK IEE+LNQ++VS DGWWS+LYRM
Sbjct: 1524 SQNDLQQLEIEDENSILKKTKDAVITLQGVLEGKHDKVIEETLNQYQVSRDGWWSSLYRM 1583
Query: 1260 IEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1293
IEGL+VMSRLARNRL QS+ E+RSIDWD +EM
Sbjct: 1584 IEGLAVMSRLARNRL-QSENGFEDRSIDWDRIEM 1616
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116630|ref|XP_002317351.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222860416|gb|EEE97963.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2238 bits (5800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1112/1295 (85%), Positives = 1214/1295 (93%), Gaps = 3/1295 (0%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
MQ+ PAWIGY+YAFSIF GVV GVLCEAQYFQNVMRVG+RLR+TLVAAVFRKSLR+THE
Sbjct: 324 MQEGDPAWIGYVYAFSIFAGVVFGVLCEAQYFQNVMRVGYRLRATLVAAVFRKSLRLTHE 383
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 120
R+ FASGKITNLMTTDAE LQQ+CQ+LHTLWSAPFRII+++VLLY +L VASLLGAL+L
Sbjct: 384 GRRKFASGKITNLMTTDAEALQQICQSLHTLWSAPFRIIVAMVLLYQQLNVASLLGALML 443
Query: 121 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
V +FP+QTF+ISRMQKL+KEGLQRTDKRIGLMNEILAAMD VKCYAWE+SFQ+KVQ VR+
Sbjct: 444 VLLFPIQTFVISRMQKLSKEGLQRTDKRIGLMNEILAAMDTVKCYAWESSFQAKVQGVRD 503
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
DELSWFRKA L ACNSFILNSIPV+VTV+SFGM+TLLGG+LTPARAFTSLSLFAVLRFP
Sbjct: 504 DELSWFRKASLLGACNSFILNSIPVMVTVISFGMYTLLGGNLTPARAFTSLSLFAVLRFP 563
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
LFMLPNMITQVVNANVSLKR+EE LAEE+ILLPNP L LPA+SI+NGYFSWDSKAER
Sbjct: 564 LFMLPNMITQVVNANVSLKRLEELFLAEERILLPNPLLDPCLPAVSIKNGYFSWDSKAER 623
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
PTL NINLD+P+GSLVA+VG TGEGKTSL+SAMLGELP SDAS VIRGTVAYVPQVSWI
Sbjct: 624 PTLSNINLDVPIGSLVAVVGSTGEGKTSLVSAMLGELPATSDASVVIRGTVAYVPQVSWI 683
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
FNATVRDNILFGS F+ ARYEKAIDVT+LQHDLDLLPGGD+TEIGERGVNISGGQKQRVS
Sbjct: 684 FNATVRDNILFGSPFDSARYEKAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVS 743
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
MARAVYSNSDV+IFDDPLSALDA VGRQVFD+CI+GELS KTR+LVTNQLHFLSQVDRII
Sbjct: 744 MARAVYSNSDVYIFDDPLSALDAQVGRQVFDKCIKGELSKKTRILVTNQLHFLSQVDRII 803
Query: 481 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTS-KPAANGVD 539
LVHEGMVKEEGTFEDLSNNG LFQKLMENAGKMEEY E++ + E VD+KTS K ANGV
Sbjct: 804 LVHEGMVKEEGTFEDLSNNGMLFQKLMENAGKMEEYEEQENN-EIVDHKTSSKQVANGVM 862
Query: 540 NDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTE 599
N+LPK S T+K KEGKSVLIKQEERETGVV+ KVL RYK+ALGG WVV++L +CY +TE
Sbjct: 863 NNLPKNVSGTKKPKEGKSVLIKQEERETGVVNLKVLIRYKNALGGAWVVMVLFMCYLMTE 922
Query: 600 TLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRL 659
LRVSSSTWLS WT+Q + K HGPL+YN IYS LS GQV VTL NSYWLI SSLYAAKRL
Sbjct: 923 VLRVSSSTWLSNWTNQGTSKRHGPLYYNLIYSFLSIGQVSVTLLNSYWLITSSLYAAKRL 982
Query: 660 HDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLI 719
HDAML+SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVA+FVNMFMGQ+SQLLSTFVLI
Sbjct: 983 HDAMLNSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAIFVNMFMGQISQLLSTFVLI 1042
Query: 720 GIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAY 779
GIVSTMSLWAIMPLL+LFY AYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAY
Sbjct: 1043 GIVSTMSLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAY 1102
Query: 780 KAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQ 839
KAYDRMA INGKSMD N+RYTLVNMGANRWLAIRLE +GG+MIW TATFAV+QNG A+NQ
Sbjct: 1103 KAYDRMASINGKSMDNNVRYTLVNMGANRWLAIRLETLGGIMIWFTATFAVMQNGRADNQ 1162
Query: 840 EAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP 899
+AFASTMGLLLSYALNITSLLTAVLRLASLAENSLN+VERVG YIELPSEAPLVIESNRP
Sbjct: 1163 QAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNSVERVGTYIELPSEAPLVIESNRP 1222
Query: 900 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 959
PPGWPSSG+IKFEDVVLRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRI
Sbjct: 1223 PPGWPSSGAIKFEDVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRI 1282
Query: 960 VELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEAL 1019
VELERGRILID DI+KFGLMDLRK+LGIIPQ+PVLFSGTVRFNLDPFSEH+DADLWEAL
Sbjct: 1283 VELERGRILIDDCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFSEHNDADLWEAL 1342
Query: 1020 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 1079
ERAHLKD IRRNSLGLD++V+EAG+NFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVR
Sbjct: 1343 ERAHLKDVIRRNSLGLDSEVTEAGDNFSVGQRQLLSLARALLRRSKILVLDEATAAVDVR 1402
Query: 1080 TDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1139
TDALIQKTIREEF+SCTMLIIAHRLNTIIDCDR++LLDSGRVLEYDTPEELLSNE S+FS
Sbjct: 1403 TDALIQKTIREEFRSCTMLIIAHRLNTIIDCDRVILLDSGRVLEYDTPEELLSNENSAFS 1462
Query: 1140 KMVQSTGAANAQYLRSLVLGGEAENKL-REENKQIDGQRRWLASSRWAAAAQYALAVSLT 1198
KMVQSTGAANAQYLRSLV+GGE E++L REENKQ+DG RRWLASSRWAAAAQ+ALAVSLT
Sbjct: 1463 KMVQSTGAANAQYLRSLVMGGERESRLGREENKQLDGPRRWLASSRWAAAAQFALAVSLT 1522
Query: 1199 SSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYR 1258
SS NDLQ+LE+ED+N++LKKTKDAVVTLQ VLEGKHDK I+ESLNQ+++S DGWWSALY+
Sbjct: 1523 SSQNDLQQLEIEDENSVLKKTKDAVVTLQRVLEGKHDKVIDESLNQYQISRDGWWSALYK 1582
Query: 1259 MIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1293
M+EGL++MSRL R+RLHQSDY LE+++IDW+HVEM
Sbjct: 1583 MVEGLAMMSRLGRHRLHQSDYGLEDKTIDWNHVEM 1617
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571320|ref|XP_002526609.1| mgatp-energized glutathione s-conjugate pump, putative [Ricinus communis] gi|223534049|gb|EEF35768.1| mgatp-energized glutathione s-conjugate pump, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2237 bits (5797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1115/1296 (86%), Positives = 1218/1296 (93%), Gaps = 3/1296 (0%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
MQ+ PAWIGYIYAFSIFVGVV GVLCEAQYFQNVMRVG+RLRSTL+AAVFRKSLR+THE
Sbjct: 274 MQEGDPAWIGYIYAFSIFVGVVFGVLCEAQYFQNVMRVGYRLRSTLIAAVFRKSLRLTHE 333
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 120
+R+ FASGKITNLMTTDAE LQQ+CQ+LHTLWSAPFRI+I+++LL+ +LGVASLLGAL+L
Sbjct: 334 SRQKFASGKITNLMTTDAEALQQICQSLHTLWSAPFRIVIAMILLFQQLGVASLLGALML 393
Query: 121 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
V +FP+QTF+ISRMQKL+KEGLQRTDKRIGLMNEILAAMD VKCYAWENSFQ KVQNVR+
Sbjct: 394 VLLFPIQTFVISRMQKLSKEGLQRTDKRIGLMNEILAAMDTVKCYAWENSFQGKVQNVRD 453
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
DELSWFRKA L ACN FILNSIPV+VTV+SFGMFTLLGGDLTPARAFTSLSLFAVLRFP
Sbjct: 454 DELSWFRKASLLGACNGFILNSIPVVVTVISFGMFTLLGGDLTPARAFTSLSLFAVLRFP 513
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
LFMLPN+ITQ VNANVSLKR+EE LLAEE+ILLPNPPL PAISI+NGYFSWDSKAE
Sbjct: 514 LFMLPNIITQAVNANVSLKRLEELLLAEERILLPNPPLDPVQPAISIKNGYFSWDSKAEM 573
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA-SAVIRGTVAYVPQVSW 359
PTL NIN+DIP GSLVAIVG TGEGKTSLISAMLGELP +SD SAVIRGTVAYVPQVSW
Sbjct: 574 PTLSNINVDIPTGSLVAIVGSTGEGKTSLISAMLGELPAMSDTTSAVIRGTVAYVPQVSW 633
Query: 360 IFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 419
IFNATVRDNILFGS F+ RYEKAIDVTSLQHDL+LLPGGD+TEIGERGVNISGGQKQRV
Sbjct: 634 IFNATVRDNILFGSTFDSTRYEKAIDVTSLQHDLELLPGGDLTEIGERGVNISGGQKQRV 693
Query: 420 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 479
SMARAVYSNSDV+IFDDPLSALDAHV RQVFD+CI+GEL KTRVLVTNQLHFLSQVDRI
Sbjct: 694 SMARAVYSNSDVYIFDDPLSALDAHVARQVFDKCIKGELGRKTRVLVTNQLHFLSQVDRI 753
Query: 480 ILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTS-KPAANGV 538
ILVHEGMVKEEGTFE+LSNNG +FQKLMENAGKMEEYVEEKE+GET D KTS KP ANGV
Sbjct: 754 ILVHEGMVKEEGTFEELSNNGMMFQKLMENAGKMEEYVEEKENGETEDQKTSSKPVANGV 813
Query: 539 DNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLT 598
ND K ++T+ KEGKSVLIK+EERETGVVS++VL RYK+ALGG WVV+IL +CY LT
Sbjct: 814 ANDFSKNVNETKNRKEGKSVLIKKEERETGVVSWRVLMRYKNALGGAWVVMILFMCYILT 873
Query: 599 ETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKR 658
E LRVSSSTWLS WTD+ + K+HGPL+YN +YS+LS GQV+VTL NSYWLIISSLYAA+R
Sbjct: 874 EVLRVSSSTWLSNWTDRGTTKSHGPLYYNLVYSILSVGQVMVTLLNSYWLIISSLYAARR 933
Query: 659 LHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVL 718
LHDAML+SILRAPMVFFHTNPLGRIINRFAKDLGDIDR+VA+FVNMF+GQVSQLLSTF+L
Sbjct: 934 LHDAMLNSILRAPMVFFHTNPLGRIINRFAKDLGDIDRSVAIFVNMFLGQVSQLLSTFIL 993
Query: 719 IGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRA 778
IGIVSTMSLW+IMPLL+LFY AYLYYQSTAREVKR+DSI+RSPVYAQFGEALNGLSTIRA
Sbjct: 994 IGIVSTMSLWSIMPLLVLFYGAYLYYQSTAREVKRMDSISRSPVYAQFGEALNGLSTIRA 1053
Query: 779 YKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAEN 838
YKAYDRMADING+SMD NIR+TLVNM ANRWLAIRLE +GG+MIWLTATFAV+QNG AEN
Sbjct: 1054 YKAYDRMADINGRSMDNNIRFTLVNMSANRWLAIRLETLGGIMIWLTATFAVMQNGRAEN 1113
Query: 839 QEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNR 898
Q+AFASTMGLLLSYALNIT LLT VLRLASLAENSLNAVERVG YI+LPSEAP VIE NR
Sbjct: 1114 QQAFASTMGLLLSYALNITGLLTGVLRLASLAENSLNAVERVGTYIDLPSEAPPVIEGNR 1173
Query: 899 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 958
PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFT+ PSDKVGIVGRTGAGKSSMLN LFR
Sbjct: 1174 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSDKVGIVGRTGAGKSSMLNALFR 1233
Query: 959 IVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEA 1018
IVELERGRILIDG+DIAKFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEA
Sbjct: 1234 IVELERGRILIDGYDIAKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEA 1293
Query: 1019 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1078
LERAHLKD IRRNSLGL+A+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDV
Sbjct: 1294 LERAHLKDVIRRNSLGLNAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDV 1353
Query: 1079 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
RTDALIQKTIREEF+SCTMLIIAHRLNTIIDCDRILLLDSG VLEYDTPEELLSNEGS+F
Sbjct: 1354 RTDALIQKTIREEFRSCTMLIIAHRLNTIIDCDRILLLDSGEVLEYDTPEELLSNEGSAF 1413
Query: 1139 SKMVQSTGAANAQYLRSLVLGGEAENKL-REENKQIDGQRRWLASSRWAAAAQYALAVSL 1197
SKMVQSTGAANAQYLR LVLGGE E++ REENK++DGQR+W+ASSRWAAAAQ+ALAVSL
Sbjct: 1414 SKMVQSTGAANAQYLRGLVLGGEGESRFGREENKRLDGQRKWMASSRWAAAAQFALAVSL 1473
Query: 1198 TSSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALY 1257
TSSHNDLQRLE++D+N+IL+KTKDAV+TLQGVLEGKHDK IEESLNQH++S DGWWSALY
Sbjct: 1474 TSSHNDLQRLEIDDENSILEKTKDAVITLQGVLEGKHDKVIEESLNQHQISKDGWWSALY 1533
Query: 1258 RMIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1293
+M+EGL++MSRL RNRLHQSDY ++RSI+WD+VEM
Sbjct: 1534 KMVEGLAMMSRLGRNRLHQSDYGFDDRSINWDNVEM 1569
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555514|ref|XP_003546076.1| PREDICTED: ABC transporter C family member 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2192 bits (5681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1085/1295 (83%), Positives = 1191/1295 (91%), Gaps = 7/1295 (0%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
MQ P+W GY+YAFSIFVGVV GVLCEAQYFQNVMRVG+RLRSTLVAAVFRKSLR+THE
Sbjct: 331 MQNGEPSWTGYVYAFSIFVGVVFGVLCEAQYFQNVMRVGYRLRSTLVAAVFRKSLRLTHE 390
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 120
ARK FA+GKITNLMTTDAE LQQ+CQ+LHTLWSAP RI++++VLLY +LGVASLLGAL+L
Sbjct: 391 ARKQFATGKITNLMTTDAEALQQICQSLHTLWSAPVRIVVAMVLLYQQLGVASLLGALML 450
Query: 121 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
V MFP+QTFIISRMQKL+KEGLQRTDKRIGLMNEILAAMD +K YAWE+SFQSKVQ VR+
Sbjct: 451 VLMFPLQTFIISRMQKLSKEGLQRTDKRIGLMNEILAAMDTLKYYAWESSFQSKVQIVRD 510
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
DELSWFRKA L ACN FILNSIPV VTV++FG+FTLLGGDLTPARAFTSLSLF+VLRFP
Sbjct: 511 DELSWFRKASLLGACNGFILNSIPVFVTVITFGVFTLLGGDLTPARAFTSLSLFSVLRFP 570
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
LFMLPN ITQVVNANVSLKR+E+ LLAEE++LLPNPP+ GLPAISI+NGYFSWD+KAER
Sbjct: 571 LFMLPNTITQVVNANVSLKRLEDLLLAEERVLLPNPPIEPGLPAISIKNGYFSWDAKAER 630
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
+L NINLDIPVG LVA+VG TGEGKTSL+SAMLGELPP++D+S V+RGTVAYVPQVSWI
Sbjct: 631 ASLSNINLDIPVGCLVAVVGSTGEGKTSLVSAMLGELPPMADSSVVLRGTVAYVPQVSWI 690
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
FNATVRDNILFGS F+PARY++AI+VT LQHDL+LLPGGD+TEIGERGVNISGGQKQRVS
Sbjct: 691 FNATVRDNILFGSVFDPARYQRAINVTELQHDLELLPGGDLTEIGERGVNISGGQKQRVS 750
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
MARAVYSNSDV+IFDDPLSALDAHV RQVFD+CI+G+L GKTRVLVTNQLHFLSQV+RII
Sbjct: 751 MARAVYSNSDVYIFDDPLSALDAHVARQVFDKCIKGDLRGKTRVLVTNQLHFLSQVNRII 810
Query: 481 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE-KEDGETVDNK-TSKPAANGV 538
LVHEGMVKEEGTFE+LSN+G LFQKLMENAGKMEEY EE K D ET D K +SKP ANG
Sbjct: 811 LVHEGMVKEEGTFEELSNHGPLFQKLMENAGKMEEYEEEEKVDTETTDQKPSSKPVANGA 870
Query: 539 DNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLT 598
ND K S K KEGKSVLIKQEER TGVVS VL+RYK ALGG WVV +L CY T
Sbjct: 871 INDHAKSGS---KPKEGKSVLIKQEERATGVVSLNVLTRYKSALGGFWVVFVLFACYVST 927
Query: 599 ETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKR 658
ETLR+SSSTWLS+WTDQS+ + + P+FYN IY+ LSFGQVLVTL NSYWLIISSLYAA+R
Sbjct: 928 ETLRISSSTWLSHWTDQSATEGYNPVFYNMIYAALSFGQVLVTLTNSYWLIISSLYAARR 987
Query: 659 LHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVL 718
LH+AML SILRAPMVFF TNPLGR+INRFAKDLGDIDRNVA FVNMF+GQVSQLLSTF+L
Sbjct: 988 LHEAMLSSILRAPMVFFQTNPLGRVINRFAKDLGDIDRNVAPFVNMFLGQVSQLLSTFIL 1047
Query: 719 IGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRA 778
IGIVSTMSLWAI+PLL+LFY AYLYYQSTAREVKRLDSI+RSPVYAQFGEALNGLSTIRA
Sbjct: 1048 IGIVSTMSLWAILPLLVLFYVAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRA 1107
Query: 779 YKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAEN 838
YKAYDRMADINGKSMD NIR+TLVNM NRWLAIRLE +GGLMIWLTATFAV+QNG AEN
Sbjct: 1108 YKAYDRMADINGKSMDNNIRFTLVNMSGNRWLAIRLETLGGLMIWLTATFAVMQNGRAEN 1167
Query: 839 QEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNR 898
Q+ FASTMGLLLSYALNITSLLT VLRLASLAENSLNAVER+G YI+LPSEAP VI++NR
Sbjct: 1168 QQEFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERIGTYIDLPSEAPSVIDNNR 1227
Query: 899 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 958
PPPGWPS GSI+FEDVVLRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFR
Sbjct: 1228 PPPGWPSLGSIRFEDVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFR 1287
Query: 959 IVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEA 1018
IVELE+GRILID +D+AKFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEA
Sbjct: 1288 IVELEQGRILIDDYDVAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEA 1347
Query: 1019 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1078
LERAHLKD IRRNSLGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV
Sbjct: 1348 LERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1407
Query: 1079 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD G+VLEYDTPEELLSNEGS+F
Sbjct: 1408 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDGGKVLEYDTPEELLSNEGSAF 1467
Query: 1139 SKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLT 1198
SKMVQSTGAAN+QYLRSL LGG+ REENK +D +R+WLASSRWAAAAQ+ALAVSLT
Sbjct: 1468 SKMVQSTGAANSQYLRSLALGGDKSE--REENKHLDARRKWLASSRWAAAAQFALAVSLT 1525
Query: 1199 SSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYR 1258
SSHNDLQRLEVED+N+ILKKTKDA++TLQGVLE KHDKEIEESL Q ++S DGWWS+LY+
Sbjct: 1526 SSHNDLQRLEVEDENSILKKTKDALITLQGVLERKHDKEIEESLEQRQISPDGWWSSLYK 1585
Query: 1259 MIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1293
MIEGL++MSRL NR HQSD+ E+RSI++D V+M
Sbjct: 1586 MIEGLAIMSRLTVNRFHQSDFGFEDRSINFDQVDM 1620
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549118|ref|XP_003542944.1| PREDICTED: ABC transporter C family member 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2185 bits (5662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1084/1295 (83%), Positives = 1190/1295 (91%), Gaps = 7/1295 (0%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
MQ P+W GY YAFSIFVGVV GVLCEAQYFQNVMRVG+RLRSTLVAAVFRKSLR+THE
Sbjct: 331 MQNGDPSWTGYAYAFSIFVGVVFGVLCEAQYFQNVMRVGYRLRSTLVAAVFRKSLRLTHE 390
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 120
ARK FA+GKITNLMTTDAE LQQ+CQ+LHTLWSAPFRI++++VLLY +LGVASLLGAL+L
Sbjct: 391 ARKQFATGKITNLMTTDAEALQQICQSLHTLWSAPFRIVVAMVLLYQQLGVASLLGALML 450
Query: 121 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
V MFP+QTFIISRMQK +KEGLQRTDKRIGLMNEILAAMD VK YAWE+SFQSKVQ VRN
Sbjct: 451 VLMFPLQTFIISRMQKFSKEGLQRTDKRIGLMNEILAAMDTVKYYAWESSFQSKVQIVRN 510
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
DELSWFRKA L ACN+FILNSIPV VTV++FG+FTLLGGDLTPARAFTSLSLF+VLRFP
Sbjct: 511 DELSWFRKASLLGACNAFILNSIPVFVTVITFGVFTLLGGDLTPARAFTSLSLFSVLRFP 570
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
LFMLPN ITQVVNANVSLKR+E+ LLAEE+ILL NPPL GLPAISI+NGYFSWD+KAER
Sbjct: 571 LFMLPNTITQVVNANVSLKRLEDLLLAEERILLSNPPLEPGLPAISIKNGYFSWDTKAER 630
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
TL NINLDIPVG LVA+VG TGEGKTSL+SAMLGELPP++D++ V+RGTVAYVPQVSWI
Sbjct: 631 ATLSNINLDIPVGCLVAVVGSTGEGKTSLVSAMLGELPPMADSTVVLRGTVAYVPQVSWI 690
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
FNATVRDN+LFGS F+P RYE+AI+VT LQHDL+LLPGGD TEIGERGVNISGGQKQRVS
Sbjct: 691 FNATVRDNVLFGSVFDPTRYERAINVTELQHDLELLPGGDHTEIGERGVNISGGQKQRVS 750
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
MARAVYSNSDV+IFDDPLSALDAHV RQVFD+CI+G+L KTRVLVTNQLHFLSQVDRII
Sbjct: 751 MARAVYSNSDVYIFDDPLSALDAHVARQVFDKCIKGDLREKTRVLVTNQLHFLSQVDRII 810
Query: 481 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNK--TSKPAANGV 538
LVHEGMVKEEGTFE+LSN+G LFQKLMENAGKMEEY EE++ ++ +S+P ANG
Sbjct: 811 LVHEGMVKEEGTFEELSNHGLLFQKLMENAGKMEEYEEEEKVVTETTDQKPSSEPVANGS 870
Query: 539 DNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLT 598
ND K S K KEGKSVLIKQEERETGVVS+ VL RYK+ALGG WVV +L CY T
Sbjct: 871 VNDHAKSGS---KPKEGKSVLIKQEERETGVVSWNVLLRYKNALGGFWVVFVLFACYVST 927
Query: 599 ETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKR 658
ETLR+SSSTWLS+WTDQS+ K + P FYN IY+ LSFGQVLVTL NSYWLIISSLYAA+R
Sbjct: 928 ETLRISSSTWLSHWTDQSATKGYNPAFYNMIYAALSFGQVLVTLTNSYWLIISSLYAARR 987
Query: 659 LHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVL 718
LH+AML SILRAPMVFF TNPLGR+INRFAKDLGDIDRNVA FVNMF+GQVSQLLSTF+L
Sbjct: 988 LHEAMLSSILRAPMVFFQTNPLGRVINRFAKDLGDIDRNVAPFVNMFLGQVSQLLSTFIL 1047
Query: 719 IGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRA 778
IGIVSTMSLWAI+PLL+LFY AYLYYQSTAREVKRLDSI+RSPVYAQFGEALNGLSTIRA
Sbjct: 1048 IGIVSTMSLWAILPLLVLFYVAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRA 1107
Query: 779 YKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAEN 838
YKAYDRMADINGKSMD NIR+TLVN+ NRWLAIRLE +GGLMIWLTATFAV+QNG AEN
Sbjct: 1108 YKAYDRMADINGKSMDNNIRFTLVNISGNRWLAIRLETLGGLMIWLTATFAVMQNGRAEN 1167
Query: 839 QEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNR 898
Q+ FASTMGLLLSYALNITSLLT VLRLASLAENSLNAVER+G YI+LPSEAP +I+ NR
Sbjct: 1168 QQEFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERIGTYIDLPSEAPSIIDDNR 1227
Query: 899 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 958
PPPGWPSSGSI+FEDVVLRYR ELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFR
Sbjct: 1228 PPPGWPSSGSIRFEDVVLRYRAELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFR 1287
Query: 959 IVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEA 1018
IVELERGRILID +D+AKFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEA
Sbjct: 1288 IVELERGRILIDDYDVAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEA 1347
Query: 1019 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1078
LERAHLKD IRRNSLGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV
Sbjct: 1348 LERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1407
Query: 1079 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD G+VLEYDTPEELLSNEGS+F
Sbjct: 1408 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDGGKVLEYDTPEELLSNEGSAF 1467
Query: 1139 SKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLT 1198
SKMVQSTGAANAQYLRSL LGG+ REEN+ +DG+R+WLASSRWAAAAQ+ALAVSLT
Sbjct: 1468 SKMVQSTGAANAQYLRSLALGGDKSE--REENEHLDGKRKWLASSRWAAAAQFALAVSLT 1525
Query: 1199 SSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYR 1258
SSHNDLQRLEVED+N+ILKKTKDA++TLQGVLE K+DKEIEESLNQ +VS +GWWS+LY+
Sbjct: 1526 SSHNDLQRLEVEDENSILKKTKDALITLQGVLERKYDKEIEESLNQRQVSPEGWWSSLYK 1585
Query: 1259 MIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1293
MIEGL++MSRLA+NRLHQSD+ E+RSI++D V+M
Sbjct: 1586 MIEGLAMMSRLAKNRLHQSDFGFEDRSINFDQVDM 1620
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|171854661|dbj|BAG16520.1| putative multidrug resistance-associated protein [Capsicum chinense] | Back alignment and taxonomy information |
|---|
Score = 2154 bits (5581), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1064/1294 (82%), Positives = 1186/1294 (91%), Gaps = 8/1294 (0%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
MQ+ PAWIGYIYAF+IFVGVV GVLCEAQYFQNVMRVG+RLRSTL+AAVFRKSLR+THE
Sbjct: 331 MQRGDPAWIGYIYAFAIFVGVVFGVLCEAQYFQNVMRVGYRLRSTLIAAVFRKSLRLTHE 390
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 120
+RKNFASGKITNLMTTD+E LQQ+CQ+LHTLWSAP RI ++LVLLY LGVA+LLGAL+L
Sbjct: 391 SRKNFASGKITNLMTTDSEALQQICQSLHTLWSAPLRITVALVLLYQLLGVAALLGALML 450
Query: 121 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
V MFP+QT++IS+MQKLTKEGLQRTDKRIGLMNE+LAAMD VK YAWENSFQSKVQ VRN
Sbjct: 451 VLMFPIQTYVISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKSYAWENSFQSKVQGVRN 510
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
+ELSW+RK+Q L A NSFILNSIPV+V V+SFG+F+LLGGDLTPARAFT+LSLFAVLRFP
Sbjct: 511 EELSWYRKSQLLGALNSFILNSIPVVVIVISFGVFSLLGGDLTPARAFTALSLFAVLRFP 570
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
LFMLPN+ITQVVNANVSLKR+E+ LLAEE+ILLPNPPL GLPAISI+NG FSW+SKAE+
Sbjct: 571 LFMLPNIITQVVNANVSLKRLEDLLLAEERILLPNPPLEPGLPAISIKNGCFSWESKAEK 630
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
PTL NINLDIP+GSLVAIVGGTGEGKTSLISAMLGELP SD+ VIRGTVAYVPQVSWI
Sbjct: 631 PTLSNINLDIPIGSLVAIVGGTGEGKTSLISAMLGELPSFSDSVVVIRGTVAYVPQVSWI 690
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
FNATVR+NILFGSA + ARY +AIDVT+L+HDL+LLPGGD+TEIGERGVNISGGQKQRVS
Sbjct: 691 FNATVRENILFGSAIDAARYNRAIDVTALRHDLELLPGGDLTEIGERGVNISGGQKQRVS 750
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
MARAVYSNSDV IFDDPLSALDA VGRQVF+RCIR EL GKTRVLVTNQLHFLSQVD+II
Sbjct: 751 MARAVYSNSDVCIFDDPLSALDADVGRQVFERCIREELKGKTRVLVTNQLHFLSQVDKII 810
Query: 481 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKE-DGETVDNKTSKPAANGVD 539
LVH+GMVKEEGTFE LSNNG LFQKLMENAGKMEEY EEKE DG ++K+SKP NG
Sbjct: 811 LVHDGMVKEEGTFEYLSNNGVLFQKLMENAGKMEEYTEEKENDG---NDKSSKPVVNGEA 867
Query: 540 NDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTE 599
N + KE + KEGKSVLIKQEERETGVVS+ VL RYK+ALGG WVV+IL +CYFL E
Sbjct: 868 NGVAKEVG--KDKKEGKSVLIKQEERETGVVSWNVLMRYKNALGGSWVVIILFVCYFLIE 925
Query: 600 TLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRL 659
LRV SSTWLS+WTDQSS + FYN IYSLLS GQV+VTL NS+WLI SSLYAAK L
Sbjct: 926 ALRVGSSTWLSFWTDQSSSTRYSAGFYNLIYSLLSLGQVMVTLMNSFWLITSSLYAAKML 985
Query: 660 HDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLI 719
HDAML SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVA FV+MF+GQV QL+STFVLI
Sbjct: 986 HDAMLGSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAPFVSMFLGQVFQLISTFVLI 1045
Query: 720 GIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAY 779
GIVSTMSLWAIMPLL+LFY AYLYYQSTAREVKRLDSI+RSPVYAQFGEALNGL+TIRAY
Sbjct: 1046 GIVSTMSLWAIMPLLVLFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLATIRAY 1105
Query: 780 KAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQ 839
KAYDRMA+INGKS+D NIR+TLVNM NRWLAIRLE VGG+MIWLTATFAVVQNG AENQ
Sbjct: 1106 KAYDRMANINGKSVDNNIRFTLVNMSGNRWLAIRLETVGGVMIWLTATFAVVQNGRAENQ 1165
Query: 840 EAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP 899
+AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG YIELPSE P +IE +RP
Sbjct: 1166 QAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIELPSEGPSIIEGSRP 1225
Query: 900 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 959
PPGWPS+GSI+FE+VVLRYRPELPPVLHG+SFTI PSDKVG+VGRTGAGKSSM N LFR+
Sbjct: 1226 PPGWPSAGSIRFENVVLRYRPELPPVLHGISFTISPSDKVGVVGRTGAGKSSMFNALFRL 1285
Query: 960 VELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEAL 1019
VE ERGRILID D++KFGL DLRK+LGIIPQ+PVLFSGTVRFNLDPF+EH+DADLWE+L
Sbjct: 1286 VEPERGRILIDDCDVSKFGLTDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESL 1345
Query: 1020 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 1079
ERAHLKD IRRNSLGLDA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVR
Sbjct: 1346 ERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVR 1405
Query: 1080 TDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1139
TDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL+SG++LEYDTPE LL EGS+FS
Sbjct: 1406 TDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLESGQLLEYDTPEVLLQKEGSAFS 1465
Query: 1140 KMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTS 1199
+MVQSTGAANAQYLRSLV GGE N + +KQ+DGQRRWLAS+RWAAAAQ+ALAV+LTS
Sbjct: 1466 RMVQSTGAANAQYLRSLVFGGEEGNSI-ARDKQLDGQRRWLASTRWAAAAQFALAVTLTS 1524
Query: 1200 SHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRM 1259
S NDL +LE+ED++NILKKTK+AV+TLQGVLEGKHDK+IEE+L+Q++VS D WWS+LY+M
Sbjct: 1525 SQNDLVQLEIEDEDNILKKTKNAVITLQGVLEGKHDKDIEETLDQYQVSRDRWWSSLYKM 1584
Query: 1260 IEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1293
IEGL++MS+LARNRL Q++++ ++++I+WD EM
Sbjct: 1585 IEGLAMMSKLARNRL-QAEFEFDDKTINWDRAEM 1617
|
Source: Capsicum chinense Species: Capsicum chinense Genus: Capsicum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823253|ref|XP_002879509.1| multidrug resistance-associated protein 2 [Arabidopsis lyrata subsp. lyrata] gi|297325348|gb|EFH55768.1| multidrug resistance-associated protein 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2154 bits (5580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1059/1298 (81%), Positives = 1180/1298 (90%), Gaps = 9/1298 (0%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
MQ+D PAW+GYIYAFSIFVGVVLGVLCEAQYFQNVMRVG+RLRS L+AAVFRKSLR+T+E
Sbjct: 330 MQEDEPAWMGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGYRLRSALIAAVFRKSLRLTNE 389
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 120
R+ F +GKITNLMTTDAE LQQ+CQ+LHT+WSAPFRII++LVLLY +LGVASL+GALLL
Sbjct: 390 GRRKFQTGKITNLMTTDAESLQQICQSLHTMWSAPFRIIVALVLLYQQLGVASLIGALLL 449
Query: 121 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
V MFP+QT IIS+MQKLTKEGLQRTDKRIGLMNE+LAAMD VKCYAWENSFQSKVQ VR+
Sbjct: 450 VLMFPLQTVIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRD 509
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
DELSWFRK+Q L A N FILNSIPVLVT+VSFG+FTLLGGDLTPARAFTSLSLFAVLRFP
Sbjct: 510 DELSWFRKSQLLGALNMFILNSIPVLVTIVSFGVFTLLGGDLTPARAFTSLSLFAVLRFP 569
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
LFMLPN+ITQVVNANVSLKR+EE L EE+ILLPNPP+ G PAISIRNGYFSWDSK +R
Sbjct: 570 LFMLPNIITQVVNANVSLKRLEEVLATEERILLPNPPIEPGEPAISIRNGYFSWDSKGDR 629
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
PTL NINLD+P+GSLVA+VG TGEGKTSLISA+LGELP SDA +RG+VAYVPQVSWI
Sbjct: 630 PTLSNINLDVPLGSLVAVVGSTGEGKTSLISAILGELPATSDAMVTLRGSVAYVPQVSWI 689
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
FNATVR+NILFGS F+ +YE+ IDVTSL+HDL+LLPGGD+TEIGERGVNISGGQKQRVS
Sbjct: 690 FNATVRENILFGSPFDREKYERVIDVTSLKHDLELLPGGDLTEIGERGVNISGGQKQRVS 749
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
MARAVYS+SDV+IFDDPLSALDAHVG+QVF++CI+ EL+ KTRVLVTNQLHFLSQVDRI+
Sbjct: 750 MARAVYSDSDVYIFDDPLSALDAHVGQQVFEKCIKRELAQKTRVLVTNQLHFLSQVDRIV 809
Query: 481 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDN 540
LVHEG VKEEGT+E+LSNNG LFQ+LMENAGK+EEY EE + E D +P ANG N
Sbjct: 810 LVHEGTVKEEGTYEELSNNGPLFQRLMENAGKVEEYSEENGEAEA-DQAVVQPVANGNTN 868
Query: 541 DLPKEASDTRKTKEG-----KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCY 595
L + SD +K+KEG KSVLIKQEERETGVVS++VL RY+DALGG WVV++LLLCY
Sbjct: 869 GLQMDGSDDKKSKEGNKKGGKSVLIKQEERETGVVSWRVLKRYQDALGGAWVVMMLLLCY 928
Query: 596 FLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYA 655
LTE RV+SSTWLS WTD + K+HGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYA
Sbjct: 929 VLTEVFRVTSSTWLSEWTDAGTPKSHGPLFYNLIYALLSFGQVLVTLTNSYWLIMSSLYA 988
Query: 656 AKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLST 715
AK+LHD MLHSILRAPM FFHTNPLGRIINRFAKDLGDIDR VAVFVNMFMGQVSQLLST
Sbjct: 989 AKKLHDNMLHSILRAPMSFFHTNPLGRIINRFAKDLGDIDRTVAVFVNMFMGQVSQLLST 1048
Query: 716 FVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLST 775
VLIGIVST+SLWAIMPLL+LFY AYLYYQ+TAREVKR+DSI+RSPVYAQFGEALNGLST
Sbjct: 1049 VVLIGIVSTLSLWAIMPLLVLFYGAYLYYQNTAREVKRMDSISRSPVYAQFGEALNGLST 1108
Query: 776 IRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 835
IRAYKAYDRMADING+SMD NIR+TLVNMGANRWL IRLE +GGLMIWLTA+FAV+QNG
Sbjct: 1109 IRAYKAYDRMADINGRSMDNNIRFTLVNMGANRWLGIRLETLGGLMIWLTASFAVMQNGR 1168
Query: 836 AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 895
AENQ+AFASTMGLLLSYALNITSLLT VLRLASLAENSLNAVERVGNYIE+P EAPLVIE
Sbjct: 1169 AENQQAFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERVGNYIEIPPEAPLVIE 1228
Query: 896 SNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNT 955
+NRPPPGWPSSGSIKFEDVVLRYRP+LPPVLHG+SF I P+DKVGIVGRTGAGKSS+LN
Sbjct: 1229 NNRPPPGWPSSGSIKFEDVVLRYRPQLPPVLHGVSFFIHPTDKVGIVGRTGAGKSSLLNA 1288
Query: 956 LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADL 1015
LFRIVE+E+GRILID D+ KFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF EH+DADL
Sbjct: 1289 LFRIVEVEKGRILIDECDVGKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFGEHNDADL 1348
Query: 1016 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1075
WE+LERAHLKD IRRN LGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA
Sbjct: 1349 WESLERAHLKDTIRRNPLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1408
Query: 1076 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD+IL+LDSGRV E+ +PE LLSNEG
Sbjct: 1409 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDKILVLDSGRVQEFSSPENLLSNEG 1468
Query: 1136 SSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAV 1195
SSFSKMVQSTGAANA+YLRSLVL + + R++++ + GQR+WLASSRWAAAAQ+ALAV
Sbjct: 1469 SSFSKMVQSTGAANAEYLRSLVLDNK---RARDDSQHLQGQRKWLASSRWAAAAQFALAV 1525
Query: 1196 SLTSSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSA 1255
SLTSSHNDLQ LE+ED ++ILK+T DAVVTL+ VLEGKHDKEI ESL + +S +GW S+
Sbjct: 1526 SLTSSHNDLQSLEIEDDSSILKRTNDAVVTLRSVLEGKHDKEIAESLEERNISKEGWLSS 1585
Query: 1256 LYRMIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1293
LYRM+EGL+VMSRLARNR+ Q DY+ E + DWD+VEM
Sbjct: 1586 LYRMVEGLAVMSRLARNRMQQPDYNFEGNTFDWDNVEM 1623
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15226801|ref|NP_181013.1| ABC transporter C family member 2 [Arabidopsis thaliana] gi|334184682|ref|NP_001189675.1| ABC transporter C family member 2 [Arabidopsis thaliana] gi|90103509|sp|Q42093.2|AB2C_ARATH RecName: Full=ABC transporter C family member 2; Short=ABC transporter ABCC.2; Short=AtABCC2; AltName: Full=ATP-energized glutathione S-conjugate pump 2; AltName: Full=Glutathione S-conjugate-transporting ATPase 2; AltName: Full=Multidrug resistance-associated protein 2 gi|3132479|gb|AAC16268.1| ABC transporter (AtMRP2) [Arabidopsis thaliana] gi|330253911|gb|AEC09005.1| ABC transporter C family member 2 [Arabidopsis thaliana] gi|330253912|gb|AEC09006.1| ABC transporter C family member 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2152 bits (5577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1058/1298 (81%), Positives = 1177/1298 (90%), Gaps = 9/1298 (0%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
MQ+D PAW+GYIYAFSIFVGVV GVLCEAQYFQNVMRVG+RLRS L+AAVFRKSLR+T+E
Sbjct: 330 MQEDAPAWMGYIYAFSIFVGVVFGVLCEAQYFQNVMRVGYRLRSALIAAVFRKSLRLTNE 389
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 120
R+ F +GKITNLMTTDAE LQQ+CQ+LHT+WSAPFRIII+L+LLY +LGVASL+GALLL
Sbjct: 390 GRRKFQTGKITNLMTTDAESLQQICQSLHTMWSAPFRIIIALILLYQQLGVASLIGALLL 449
Query: 121 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
V MFP+QT IIS+MQKLTKEGLQRTDKRIGLMNE+LAAMD VKCYAWENSFQSKVQ VR+
Sbjct: 450 VLMFPLQTVIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRD 509
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
DELSWFRK+Q L A N FILNSIPVLVT+VSFG+FTLLGGDLTPARAFTSLSLFAVLRFP
Sbjct: 510 DELSWFRKSQLLGALNMFILNSIPVLVTIVSFGVFTLLGGDLTPARAFTSLSLFAVLRFP 569
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
LFMLPN+ITQVVNANVSLKR+EE L EE+ILLPNPP+ G PAISIRNGYFSWDSK +R
Sbjct: 570 LFMLPNIITQVVNANVSLKRLEEVLATEERILLPNPPIEPGEPAISIRNGYFSWDSKGDR 629
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
PTL NINLD+P+GSLVA+VG TGEGKTSLISA+LGELP SDA +RG+VAYVPQVSWI
Sbjct: 630 PTLSNINLDVPLGSLVAVVGSTGEGKTSLISAILGELPATSDAIVTLRGSVAYVPQVSWI 689
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
FNATVRDNILFGS F+ +YE+AIDVTSL+HDL+LLPGGD+TEIGERGVNISGGQKQRVS
Sbjct: 690 FNATVRDNILFGSPFDREKYERAIDVTSLKHDLELLPGGDLTEIGERGVNISGGQKQRVS 749
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
MARAVYSNSDV+IFDDPLSALDAHVG+QVF++CI+ EL KTRVLVTNQLHFLSQVDRI+
Sbjct: 750 MARAVYSNSDVYIFDDPLSALDAHVGQQVFEKCIKRELGQKTRVLVTNQLHFLSQVDRIV 809
Query: 481 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDN 540
LVHEG VKEEGT+E+LS+NG LFQ+LMENAGK+EEY EE + E D +P ANG N
Sbjct: 810 LVHEGTVKEEGTYEELSSNGPLFQRLMENAGKVEEYSEENGEAEA-DQTAEQPVANGNTN 868
Query: 541 DLPKEASDTRKTKEG-----KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCY 595
L + SD +K+KEG KSVLIKQEERETGVVS++VL RY+DALGG WVV++LLLCY
Sbjct: 869 GLQMDGSDDKKSKEGNKKGGKSVLIKQEERETGVVSWRVLKRYQDALGGAWVVMMLLLCY 928
Query: 596 FLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYA 655
LTE RV+SSTWLS WTD + K+HGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYA
Sbjct: 929 VLTEVFRVTSSTWLSEWTDAGTPKSHGPLFYNLIYALLSFGQVLVTLTNSYWLIMSSLYA 988
Query: 656 AKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLST 715
AK+LHD MLHSILRAPM FFHTNPLGRIINRFAKDLGDIDR VAVFVNMFMGQVSQLLST
Sbjct: 989 AKKLHDNMLHSILRAPMSFFHTNPLGRIINRFAKDLGDIDRTVAVFVNMFMGQVSQLLST 1048
Query: 716 FVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLST 775
VLIGIVST+SLWAIMPLL+LFY AYLYYQ+TAREVKR+DSI+RSPVYAQFGEALNGLST
Sbjct: 1049 VVLIGIVSTLSLWAIMPLLVLFYGAYLYYQNTAREVKRMDSISRSPVYAQFGEALNGLST 1108
Query: 776 IRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 835
IRAYKAYDRMADING+SMD NIR+TLVNMGANRWL IRLE +GGLMIWLTA+FAV+QNG
Sbjct: 1109 IRAYKAYDRMADINGRSMDNNIRFTLVNMGANRWLGIRLETLGGLMIWLTASFAVMQNGR 1168
Query: 836 AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 895
AENQ+AFASTMGLLLSYALNITSLLT VLRLASLAENSLNAVERVGNYIE+P EAP VIE
Sbjct: 1169 AENQQAFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERVGNYIEIPPEAPPVIE 1228
Query: 896 SNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNT 955
+NRPPPGWPSSGSIKFEDVVLRYRP+LPPVLHG+SF I P+DKVGIVGRTGAGKSS+LN
Sbjct: 1229 NNRPPPGWPSSGSIKFEDVVLRYRPQLPPVLHGVSFFIHPTDKVGIVGRTGAGKSSLLNA 1288
Query: 956 LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADL 1015
LFRIVE+E+GRILID D+ KFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF EH+DADL
Sbjct: 1289 LFRIVEVEKGRILIDDCDVGKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFGEHNDADL 1348
Query: 1016 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1075
WE+LERAHLKD IRRN LGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA
Sbjct: 1349 WESLERAHLKDTIRRNPLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1408
Query: 1076 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD+IL+LDSGRV E+ +PE LLSNEG
Sbjct: 1409 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDKILVLDSGRVQEFSSPENLLSNEG 1468
Query: 1136 SSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAV 1195
SSFSKMVQSTGAANA+YLRSLVL + + ++++ + GQR+WLASSRWAAAAQ+ALA
Sbjct: 1469 SSFSKMVQSTGAANAEYLRSLVLDNK---RAKDDSHHLQGQRKWLASSRWAAAAQFALAA 1525
Query: 1196 SLTSSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSA 1255
SLTSSHNDLQ LE+ED ++ILK+T DAVVTL+ VLEGKHDKEI ESL +H +S +GW S+
Sbjct: 1526 SLTSSHNDLQSLEIEDDSSILKRTNDAVVTLRSVLEGKHDKEIAESLEEHNISREGWLSS 1585
Query: 1256 LYRMIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1293
LYRM+EGL+VMSRLARNR+ Q DY+ E + DWD+VEM
Sbjct: 1586 LYRMVEGLAVMSRLARNRMQQPDYNFEGNTFDWDNVEM 1623
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2440015|gb|AAC49988.1| multidrug resistance-associated protein 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2146 bits (5561), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1055/1298 (81%), Positives = 1174/1298 (90%), Gaps = 9/1298 (0%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
MQ+D PAW+GYIYAFSIFVGVV GVLCEAQYFQNVMRVG+RLRS L+AAV RKSLR+T+E
Sbjct: 330 MQEDAPAWMGYIYAFSIFVGVVFGVLCEAQYFQNVMRVGYRLRSALIAAVSRKSLRLTNE 389
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 120
R+ F +GKITNLMTTDAE LQQ+CQ+LHT+WSAPFRIII+L+LLY +LGVASL+GALLL
Sbjct: 390 GRRKFQTGKITNLMTTDAESLQQICQSLHTMWSAPFRIIIALILLYQQLGVASLIGALLL 449
Query: 121 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
V MFP+QT IIS+MQKLTKEGLQRTDKRIGLMNE+LAAMD VKCYAWENSFQSKVQ VR+
Sbjct: 450 VLMFPLQTVIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRD 509
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
DELSWFRK+Q L A N FILNSIPVLVT+VSFG+FTLLGGDLTPARAFTSLSLFAVLRFP
Sbjct: 510 DELSWFRKSQLLGALNMFILNSIPVLVTIVSFGVFTLLGGDLTPARAFTSLSLFAVLRFP 569
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
LFMLPN+ITQVVNANVSLKR+EE L EE+ILLPNPP+ G PAISIRNGYFSWDSK +R
Sbjct: 570 LFMLPNIITQVVNANVSLKRLEEVLATEERILLPNPPIEPGEPAISIRNGYFSWDSKGDR 629
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
PTL NINLD+P+GSLVA+VG TGEGKTSLISA+LGELP SDA +RG+VAYVPQVSWI
Sbjct: 630 PTLSNINLDVPLGSLVAVVGSTGEGKTSLISAILGELPATSDAIVTLRGSVAYVPQVSWI 689
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
FNATVRDNILFGS F+ +YE+AIDVTSL+HDL+LLPGGD+TEIGERGVNISGGQKQRVS
Sbjct: 690 FNATVRDNILFGSPFDREKYERAIDVTSLKHDLELLPGGDLTEIGERGVNISGGQKQRVS 749
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
MARAVYSNSDV+IFDDPLSALDAHVG+QVF++CI+ EL KTRVLVTNQLHFLSQVDRI+
Sbjct: 750 MARAVYSNSDVYIFDDPLSALDAHVGQQVFEKCIKRELGQKTRVLVTNQLHFLSQVDRIV 809
Query: 481 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDN 540
LVHEG VKEEGT+E+LS+NG LFQ+LMENAGK+EEY EE + E D +P ANG N
Sbjct: 810 LVHEGTVKEEGTYEELSSNGPLFQRLMENAGKVEEYSEENGEAEA-DQTAEQPVANGNTN 868
Query: 541 DLPKEASDTRKTKEG-----KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCY 595
L + SD +K+KEG KSVLIKQEERETGVVS++VL RY+DALGG WVV++LLLCY
Sbjct: 869 GLQMDGSDDKKSKEGNKKGGKSVLIKQEERETGVVSWRVLKRYQDALGGAWVVMMLLLCY 928
Query: 596 FLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYA 655
LTE RV+SSTWLS WTD + K+HGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYA
Sbjct: 929 VLTEVFRVTSSTWLSEWTDAGTPKSHGPLFYNLIYALLSFGQVLVTLTNSYWLIMSSLYA 988
Query: 656 AKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLST 715
AK+LHD MLHSILRAPM FFHTNPLGRIINRFAKDLGDIDR VAVFVNMFMGQVSQLLST
Sbjct: 989 AKKLHDNMLHSILRAPMSFFHTNPLGRIINRFAKDLGDIDRTVAVFVNMFMGQVSQLLST 1048
Query: 716 FVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLST 775
VLIGIVST+SLWAIMPLL+LFY AYLYYQ+TAREVKR+DSI+RSPVYAQFGEALNGLST
Sbjct: 1049 VVLIGIVSTLSLWAIMPLLVLFYGAYLYYQNTAREVKRMDSISRSPVYAQFGEALNGLST 1108
Query: 776 IRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 835
IRAYKAYDRMADING+SMD NIR+TLVNMGANRWL IRLE +GGLMIWLTA+FAV+QNG
Sbjct: 1109 IRAYKAYDRMADINGRSMDNNIRFTLVNMGANRWLGIRLETLGGLMIWLTASFAVMQNGR 1168
Query: 836 AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 895
AENQ+AFASTMGLLLSYALNITSLLT VLRLASLAENSLNAVERVGNYIE+P EAP VIE
Sbjct: 1169 AENQQAFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERVGNYIEIPPEAPPVIE 1228
Query: 896 SNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNT 955
+NRPPPGWPSSGSIKFEDVVL YRP+LPPVLHG+SF I P+DKVGIVGRTGAGKSS+LN
Sbjct: 1229 NNRPPPGWPSSGSIKFEDVVLCYRPQLPPVLHGVSFFIHPTDKVGIVGRTGAGKSSLLNA 1288
Query: 956 LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADL 1015
LFRIVE+E+GRILID D+ KFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF EH+DADL
Sbjct: 1289 LFRIVEVEKGRILIDDCDVGKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFGEHNDADL 1348
Query: 1016 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1075
WE+LERAHLKD IRRN LGLDA+VSEAGENFSVGQRQLLSLSR LLRRSKILVLDEATAA
Sbjct: 1349 WESLERAHLKDTIRRNPLGLDAEVSEAGENFSVGQRQLLSLSRGLLRRSKILVLDEATAA 1408
Query: 1076 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD+IL+LDSGRV E+ +PE LLSNEG
Sbjct: 1409 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDKILVLDSGRVQEFSSPENLLSNEG 1468
Query: 1136 SSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAV 1195
SSFSKMVQSTGAANA+YLRSLVL + + ++++ + GQR+WLASSRWAAAAQ+ALA
Sbjct: 1469 SSFSKMVQSTGAANAEYLRSLVLDNK---RAKDDSHHLQGQRKWLASSRWAAAAQFALAA 1525
Query: 1196 SLTSSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSA 1255
SLTSSHNDLQ LE+ED ++ILK+T DAVVTL+ VLEGKHDKEI ESL +H +S +GW S+
Sbjct: 1526 SLTSSHNDLQSLEIEDDSSILKRTNDAVVTLRSVLEGKHDKEIAESLEEHNISREGWLSS 1585
Query: 1256 LYRMIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1293
LYRM+EGL+VMSRLARNR+ Q DY+ E + DWD+VEM
Sbjct: 1586 LYRMVEGLAVMSRLARNRMQQPDYNFEGNTFDWDNVEM 1623
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1293 | ||||||
| TAIR|locus:2061559 | 1623 | ABCC2 "ATP-binding cassette C2 | 0.996 | 0.794 | 0.768 | 0.0 | |
| TAIR|locus:2204202 | 1622 | ABCC1 "ATP-binding cassette C1 | 0.999 | 0.796 | 0.748 | 0.0 | |
| TAIR|locus:2028155 | 1495 | ABCC11 "ATP-binding cassette C | 0.891 | 0.771 | 0.695 | 0.0 | |
| ZFIN|ZDB-GENE-040426-1523 | 1567 | abcc2 "ATP-binding cassette, s | 0.452 | 0.373 | 0.443 | 2.1e-239 | |
| UNIPROTKB|Q28689 | 1564 | ABCC2 "Canalicular multispecif | 0.524 | 0.433 | 0.393 | 9.7e-231 | |
| UNIPROTKB|F1S8V9 | 1544 | ABCC2 "Uncharacterized protein | 0.510 | 0.427 | 0.384 | 2.2e-229 | |
| UNIPROTKB|F1PHV0 | 1544 | ABCC2 "Uncharacterized protein | 0.464 | 0.388 | 0.415 | 4.8e-229 | |
| MGI|MGI:1352447 | 1543 | Abcc2 "ATP-binding cassette, s | 0.453 | 0.379 | 0.423 | 1.4e-227 | |
| UNIPROTKB|F1MIP7 | 1543 | ABCC2 "Uncharacterized protein | 0.450 | 0.377 | 0.413 | 2.7e-226 | |
| UNIPROTKB|E1C6S5 | 1552 | ABCC2 "Uncharacterized protein | 0.497 | 0.414 | 0.405 | 1.5e-225 |
| TAIR|locus:2061559 ABCC2 "ATP-binding cassette C2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5110 (1803.9 bits), Expect = 0., P = 0.
Identities = 998/1298 (76%), Positives = 1111/1298 (85%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
MQ+D PAW+GYIYAFSIFVGVV GVLCEAQYFQNVMRVG+RLRS L+AAVFRKSLR+T+E
Sbjct: 330 MQEDAPAWMGYIYAFSIFVGVVFGVLCEAQYFQNVMRVGYRLRSALIAAVFRKSLRLTNE 389
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNEXXXXXXXXXXXX 120
R+ F +GKITNLMTTDAE LQQ+CQ+LHT+WSAPFRIII+L+LLY +
Sbjct: 390 GRRKFQTGKITNLMTTDAESLQQICQSLHTMWSAPFRIIIALILLYQQLGVASLIGALLL 449
Query: 121 XFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
MFP+QT IIS+MQKLTKEGLQRTDKRIGLMNE+LAAMD VKCYAWENSFQSKVQ VR+
Sbjct: 450 VLMFPLQTVIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRD 509
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
DELSWFRK+Q L A N FILNSIPVLVT+VSFG+FTLLGGDLTPARAFTSLSLFAVLRFP
Sbjct: 510 DELSWFRKSQLLGALNMFILNSIPVLVTIVSFGVFTLLGGDLTPARAFTSLSLFAVLRFP 569
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
LFMLPN+ITQVVNANVSLKR+EE L EE+ILLPNPP+ G PAISIRNGYFSWDSK +R
Sbjct: 570 LFMLPNIITQVVNANVSLKRLEEVLATEERILLPNPPIEPGEPAISIRNGYFSWDSKGDR 629
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
PTL NINLD+P+GSLVA+VG TGEGKTSLISA+LGELP SDA +RG+VAYVPQVSWI
Sbjct: 630 PTLSNINLDVPLGSLVAVVGSTGEGKTSLISAILGELPATSDAIVTLRGSVAYVPQVSWI 689
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
FNATVRDNILFGS F+ +YE+AIDVTSL+HDL+LLPGGD+TEIGERGVNISGGQKQRVS
Sbjct: 690 FNATVRDNILFGSPFDREKYERAIDVTSLKHDLELLPGGDLTEIGERGVNISGGQKQRVS 749
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
MARAVYSNSDV+IFDDPLSALDAHVG+QVF++CI+ EL KTRVLVTNQLHFLSQVDRI+
Sbjct: 750 MARAVYSNSDVYIFDDPLSALDAHVGQQVFEKCIKRELGQKTRVLVTNQLHFLSQVDRIV 809
Query: 481 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDN 540
LVHEG VKEEGT+E+LS+NG LFQ+LMENAGK+EEY EE + E D +P ANG N
Sbjct: 810 LVHEGTVKEEGTYEELSSNGPLFQRLMENAGKVEEYSEENGEAEA-DQTAEQPVANGNTN 868
Query: 541 DLPKEASDTRKTKEG-----KSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCY 595
L + SD +K+KEG KSVLIKQEERETGVVS++VL RY+DA CY
Sbjct: 869 GLQMDGSDDKKSKEGNKKGGKSVLIKQEERETGVVSWRVLKRYQDALGGAWVVMMLLLCY 928
Query: 596 FLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYA 655
LTE RV+SSTWLS WTD + K+HGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYA
Sbjct: 929 VLTEVFRVTSSTWLSEWTDAGTPKSHGPLFYNLIYALLSFGQVLVTLTNSYWLIMSSLYA 988
Query: 656 AKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLST 715
AK+LHD MLHSILRAPM FFHTNPLGRIINRFAKDLGDIDR VAVFVNMFMGQVSQLLST
Sbjct: 989 AKKLHDNMLHSILRAPMSFFHTNPLGRIINRFAKDLGDIDRTVAVFVNMFMGQVSQLLST 1048
Query: 716 FVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLST 775
VLIGIVST+SLWAIMP Q+TAREVKR+DSI+RSPVYAQFGEALNGLST
Sbjct: 1049 VVLIGIVSTLSLWAIMPLLVLFYGAYLYYQNTAREVKRMDSISRSPVYAQFGEALNGLST 1108
Query: 776 IRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 835
IRAYKAYDRMADING+SMD NIR+TLVNMGANRWL IRLE +GGLMIWLTA+FAV+QNG
Sbjct: 1109 IRAYKAYDRMADINGRSMDNNIRFTLVNMGANRWLGIRLETLGGLMIWLTASFAVMQNGR 1168
Query: 836 AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 895
AENQ+AFASTMGLLLSYALNITSLLT VLRLASLAENSLNAVERVGNYIE+P EAP VIE
Sbjct: 1169 AENQQAFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERVGNYIEIPPEAPPVIE 1228
Query: 896 SNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNT 955
+NRPPPGWPSSGSIKFEDVVLRYRP+LPPVLHG+SF I P+DKVGIVGRTGAGKSS+LN
Sbjct: 1229 NNRPPPGWPSSGSIKFEDVVLRYRPQLPPVLHGVSFFIHPTDKVGIVGRTGAGKSSLLNA 1288
Query: 956 LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADL 1015
LFRIVE+E+GRILID D+ KFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF EH+DADL
Sbjct: 1289 LFRIVEVEKGRILIDDCDVGKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFGEHNDADL 1348
Query: 1016 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAA 1075
WE+LERAHLKD IRRN LGLDA+VSEAGENFSVGQRQ KILVLDEATAA
Sbjct: 1349 WESLERAHLKDTIRRNPLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1408
Query: 1076 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD+IL+LDSGRV E+ +PE LLSNEG
Sbjct: 1409 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDKILVLDSGRVQEFSSPENLLSNEG 1468
Query: 1136 SSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGXXXXXXXXXXXXXXXXXXXV 1195
SSFSKMVQSTGAANA+YLRSLVL + + ++++ + G
Sbjct: 1469 SSFSKMVQSTGAANAEYLRSLVLDNK---RAKDDSHHLQGQRKWLASSRWAAAAQFALAA 1525
Query: 1196 SLTSSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSA 1255
SLTSSHNDLQ LE+ED ++ILK+T DAVVTL+ VLEGKHDKEI ESL +H +S +GW S+
Sbjct: 1526 SLTSSHNDLQSLEIEDDSSILKRTNDAVVTLRSVLEGKHDKEIAESLEEHNISREGWLSS 1585
Query: 1256 LYRMIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1293
LYRM+EGL+VMSRLARNR+ Q DY+ E + DWD+VEM
Sbjct: 1586 LYRMVEGLAVMSRLARNRMQQPDYNFEGNTFDWDNVEM 1623
|
|
| TAIR|locus:2204202 ABCC1 "ATP-binding cassette C1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5004 (1766.6 bits), Expect = 0., P = 0.
Identities = 969/1294 (74%), Positives = 1103/1294 (85%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
MQ + PAWIGYIYA SIFVGVVLGVLCEAQYFQNVMRVG+RLRS L+AAVFRKSLR+T+E
Sbjct: 330 MQLNEPAWIGYIYAISIFVGVVLGVLCEAQYFQNVMRVGYRLRSALIAAVFRKSLRLTNE 389
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNEXXXXXXXXXXXX 120
RK F +GKITNLMTTDAE LQQ+CQ+LHT+WSAPFRII++LVLLY +
Sbjct: 390 GRKKFQTGKITNLMTTDAESLQQICQSLHTMWSAPFRIIVALVLLYQQLGVASIIGALFL 449
Query: 121 XFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
MFP+QT IIS+ QKLTKEGLQRTDKRIGLMNE+LAAMD VKCYAWENSFQSKVQ VR+
Sbjct: 450 VLMFPIQTVIISKTQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRD 509
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
DELSWFRKAQ L+A N FILNSIPVLVTVVSFG+F+LLGGDLTPARAFTSLSLF+VLRFP
Sbjct: 510 DELSWFRKAQLLSAFNMFILNSIPVLVTVVSFGVFSLLGGDLTPARAFTSLSLFSVLRFP 569
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
LFMLPN+ITQ+VNANVSL R+EE L EE++LLPNPP+ G PAISIRNGYFSWDSKA+R
Sbjct: 570 LFMLPNIITQMVNANVSLNRLEEVLSTEERVLLPNPPIEPGQPAISIRNGYFSWDSKADR 629
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
PTL NINLDIP+GSLVA+VG TGEGKTSLISAMLGELP SDA+ +RG+VAYVPQVSWI
Sbjct: 630 PTLSNINLDIPLGSLVAVVGSTGEGKTSLISAMLGELPARSDATVTLRGSVAYVPQVSWI 689
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
FNATVRDNILFG+ F+ +YE+ IDVT+LQHDL+LLPGGD+TEIGERGVNISGGQKQRVS
Sbjct: 690 FNATVRDNILFGAPFDQEKYERVIDVTALQHDLELLPGGDLTEIGERGVNISGGQKQRVS 749
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
MARAVYSNSDV I DDPLSALDAHVG+QVF++CI+ EL TRVLVTNQLHFLSQVD+I+
Sbjct: 750 MARAVYSNSDVCILDDPLSALDAHVGQQVFEKCIKRELGQTTRVLVTNQLHFLSQVDKIL 809
Query: 481 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDN 540
LVHEG VKEEGT+E+L ++G LFQ+LMENAGK+E+Y EE + E VD + KP NG N
Sbjct: 810 LVHEGTVKEEGTYEELCHSGPLFQRLMENAGKVEDYSEENGEAE-VDQTSVKPVENGNAN 868
Query: 541 DLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTET 600
+L K+ +T+ +KEG SVL+K+EERETGVVS+KVL RY++A CY LT+
Sbjct: 869 NLQKDGIETKNSKEGNSVLVKREERETGVVSWKVLERYQNALGGAWVVMMLVICYVLTQV 928
Query: 601 LRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLH 660
RVSSSTWLS WTD + KTHGPLFYN +Y+LLSFGQV VTL NSYWLI+SSLYAAK++H
Sbjct: 929 FRVSSSTWLSEWTDSGTPKTHGPLFYNIVYALLSFGQVSVTLINSYWLIMSSLYAAKKMH 988
Query: 661 DAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIG 720
DAML SILRAPMVFF TNPLGRIINRFAKD+GDIDR VAVFVNMFMG ++QLLST +LIG
Sbjct: 989 DAMLGSILRAPMVFFQTNPLGRIINRFAKDMGDIDRTVAVFVNMFMGSIAQLLSTVILIG 1048
Query: 721 IVSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 780
IVST+SLWAIMP Q+T+RE+KR+DS TRSPVYAQFGEALNGLS+IRAYK
Sbjct: 1049 IVSTLSLWAIMPLLVVFYGAYLYYQNTSREIKRMDSTTRSPVYAQFGEALNGLSSIRAYK 1108
Query: 781 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 840
AYDRMA+ING+SMD NIR+TLVNM ANRWL IRLE++GGLM+WLTA+ AV+QNG A NQ+
Sbjct: 1109 AYDRMAEINGRSMDNNIRFTLVNMAANRWLGIRLEVLGGLMVWLTASLAVMQNGKAANQQ 1168
Query: 841 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 900
A+ASTMGLLLSYAL+ITS LTAVLRLASLAENSLN+VERVGNYIE+PSEAPLVIE+NRPP
Sbjct: 1169 AYASTMGLLLSYALSITSSLTAVLRLASLAENSLNSVERVGNYIEIPSEAPLVIENNRPP 1228
Query: 901 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 960
PGWPSSGSIKFEDVVLRYRPELPPVLHG+SF I P DKVGIVGRTGAGKSS+LN LFRIV
Sbjct: 1229 PGWPSSGSIKFEDVVLRYRPELPPVLHGVSFLISPMDKVGIVGRTGAGKSSLLNALFRIV 1288
Query: 961 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE 1020
ELE+GRILID DI +FGLMDLRK+LGIIPQ+PVLFSGTVRFNLDPFSEH+DADLWE+LE
Sbjct: 1289 ELEKGRILIDECDIGRFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFSEHNDADLWESLE 1348
Query: 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRT 1080
RAHLKD IRRN LGLDA+V+EAGENFSVGQRQ KILVLDEATAAVDVRT
Sbjct: 1349 RAHLKDTIRRNPLGLDAEVTEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1408
Query: 1081 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140
D LIQKTIREEFKSCTMLIIAHRLNTIIDCD++L+LDSG+V E+ +PE LLSN SSFSK
Sbjct: 1409 DVLIQKTIREEFKSCTMLIIAHRLNTIIDCDKVLVLDSGKVQEFSSPENLLSNGESSFSK 1468
Query: 1141 MVQSTGAANAQYLRSLVLGGEAENKLREENKQ-IDGXXXXXXXXXXXXXXXXXXXVSLTS 1199
MVQSTG ANA+YLRS+ L + + ++ Q ++G VSLTS
Sbjct: 1469 MVQSTGTANAEYLRSITLENKRTREANGDDSQPLEGQRKWQASSRWAAAAQFALAVSLTS 1528
Query: 1200 SHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRM 1259
SHNDLQ LE+ED N+ILKKTKDAVVTL+ VLEGKHDKEIE+SLNQ ++S + WW +LY+M
Sbjct: 1529 SHNDLQSLEIEDDNSILKKTKDAVVTLRSVLEGKHDKEIEDSLNQSDISRERWWPSLYKM 1588
Query: 1260 IEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1293
+EGL+VMSRLARNR+ DY+LE +S DWD+VEM
Sbjct: 1589 VEGLAVMSRLARNRMQHPDYNLEGKSFDWDNVEM 1622
|
|
| TAIR|locus:2028155 ABCC11 "ATP-binding cassette C11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4120 (1455.4 bits), Expect = 0., P = 0.
Identities = 805/1157 (69%), Positives = 939/1157 (81%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
M + PAW+GY+YAF IF GV GVLC++QYFQ+V RVGFRLRSTLVAA+F KSLR+T++
Sbjct: 331 MIEGDPAWVGYVYAFLIFFGVTFGVLCQSQYFQHVGRVGFRLRSTLVAAIFHKSLRLTNK 390
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNEXXXXXXXXXXXX 120
ARKNFASGK+TN++TTDA LQ + + LH LWSAPFRII+S+VLLY +
Sbjct: 391 ARKNFASGKVTNMITTDANALQLIAEQLHGLWSAPFRIIVSMVLLYQQLGVASIFGSLIL 450
Query: 121 XFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
+ P QT I+ +M+KLTKEGLQ TDKR+G++ EILA+MD VKCYAWE SF+S++Q +RN
Sbjct: 451 FLLIPFQTLIVRKMRKLTKEGLQWTDKRVGIIYEILASMDIVKCYAWEKSFESRIQGIRN 510
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
+ELSWFRKAQ L+A NSFILNS PV+VT+VSFG++ LLGGDLTPARAFTSLSLFAVLR P
Sbjct: 511 EELSWFRKAQLLSAFNSFILNSTPVVVTLVSFGVYVLLGGDLTPARAFTSLSLFAVLRSP 570
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
L LPN+I+Q VNANVSL+R+EE LL+EE+IL NPPL G PAISI+NGYFSWDSK +
Sbjct: 571 LSTLPNLISQAVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSK 630
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
PTL +INL+IPVGSLVAIVGGTGEGKTSLISAMLGEL +S IRG+VAYVPQVSWI
Sbjct: 631 PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVDIRGSVAYVPQVSWI 690
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
FNAT+R+NILFGS FE RY +AIDVT+LQHDLDL PG D TEIGERGVNISGGQKQRVS
Sbjct: 691 FNATLRENILFGSDFESERYWRAIDVTALQHDLDLFPGRDRTEIGERGVNISGGQKQRVS 750
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
MARAVYSNSD++IFDDP SALDAHV QVFD C++ EL GKTRVLVTNQLHFL +DRII
Sbjct: 751 MARAVYSNSDIYIFDDPFSALDAHVAHQVFDSCVKHELKGKTRVLVTNQLHFLPLMDRII 810
Query: 481 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDN 540
LV EGM+KEEG F +LS +G LF+KLMENAGKM+ E + E + +K V
Sbjct: 811 LVSEGMIKEEGNFAELSKSGTLFKKLMENAGKMDATQEVNTNDENI-SKLGPTVTIDVSE 869
Query: 541 DLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTET 600
+ ++ K G+S+L+KQEERETG++S+ V+ RY A CY TE
Sbjct: 870 ---RSLGSIQQGKWGRSMLVKQEERETGIISWDVVMRYNKAVGGLWVVMILLVCYLTTEV 926
Query: 601 LRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLH 660
LRV SSTWLS WTDQS+ K++ P FY +Y+LL FGQV VT NS+WLI SSL+AAKRLH
Sbjct: 927 LRVLSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLH 986
Query: 661 DAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIG 720
DAML+SILRAPM+FF TNP GR+INRF+KD+GDIDRNVA +NMFM Q+ QLLSTF LIG
Sbjct: 987 DAMLNSILRAPMLFFETNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIG 1046
Query: 721 IVSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 780
IVST+SLWAIMP QST+REV+RLDS+TRSP+YA FGEALNGLS+IRAYK
Sbjct: 1047 IVSTISLWAIMPLLILFYATYIYYQSTSREVRRLDSVTRSPIYALFGEALNGLSSIRAYK 1106
Query: 781 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 840
AYDRMA INGKSMD NIR+TL + +NRWL IR E +GG+MIWLTATFAV++ G+AENQ
Sbjct: 1107 AYDRMAKINGKSMDNNIRFTLASTSSNRWLTIRSESLGGVMIWLTATFAVLRYGNAENQA 1166
Query: 841 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 900
FASTMGLLLSY LNIT+LL+ VLR AS AENSLN+VERVGNYI+LPSEA +IE+NRP
Sbjct: 1167 VFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPV 1226
Query: 901 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 960
GWPS GSI+FEDV LRYRP LPPVLHGLSF + PS+KVG+VGRTGAGKSSMLN L+RIV
Sbjct: 1227 SGWPSRGSIQFEDVHLRYRPGLPPVLHGLSFFVYPSEKVGVVGRTGAGKSSMLNALYRIV 1286
Query: 961 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE 1020
ELE+GRILID +D+AKFGL DLR++L IIPQSPVLFSGTVRFN+DPFSEH+DADLWEALE
Sbjct: 1287 ELEKGRILIDDYDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALE 1346
Query: 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRT 1080
RAH+KD I RN GLDA+VSE GENFSVGQRQ KIL LDEATA+VDVRT
Sbjct: 1347 RAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILFLDEATASVDVRT 1406
Query: 1081 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140
D+LIQ+TIREEFKSCTMLIIAHRLNTIIDCD+IL+L SG+VLEYD+P+ELLS + S+F K
Sbjct: 1407 DSLIQRTIREEFKSCTMLIIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFK 1466
Query: 1141 MVQSTGAANAQYLRSLV 1157
MV STG N QYL +LV
Sbjct: 1467 MVHSTGPENGQYLSNLV 1483
|
|
| ZFIN|ZDB-GENE-040426-1523 abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1233 (439.1 bits), Expect = 2.1e-239, Sum P(3) = 2.1e-239
Identities = 266/600 (44%), Positives = 371/600 (61%)
Query: 553 KEGKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYW 612
K+G+ LI++E ETG V F V +Y A YF+ + + WLS W
Sbjct: 964 KKGQR-LIEKEMMETGRVKFSVYLQYLSAMGWWYVGFSFVF-YFIQNVAVIGQNLWLSDW 1021
Query: 613 TDQSSL---KTHGPLFYNT---IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 666
TD S +T+ +T ++ L Q + + L S+ A++ LH ++L +
Sbjct: 1022 TDDSIEYFNQTYPNHIRDTRIGVFGALGLAQGFLVFFGTILLADGSISASRTLHTSLLTN 1081
Query: 667 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS 726
IL+ PM+FF T P GRI+NRFAKD+ +D + + ++ + +L T +I + + +
Sbjct: 1082 ILKVPMMFFDTTPSGRIVNRFAKDIFTVDEMIPMSFRSWILCLLGVLGTLFVICLATPIF 1141
Query: 727 LWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA 786
++P +T+R+++RLDS++RSP+Y+ FGE ++GLS IRAY DR
Sbjct: 1142 TAVVVPMAVVYYFVQRFYVATSRQLRRLDSVSRSPIYSHFGETVSGLSVIRAYGHQDRFL 1201
Query: 787 DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTM 846
N ++D+N++ + +NRWLA+RLE +G L+++ A FAV+ S + +
Sbjct: 1202 KHNEDTIDQNLKSVYPWIVSNRWLAMRLESLGNLVVFFAALFAVISRDSLNS-----GLV 1256
Query: 847 GLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSS 906
GL +SYALN+T L ++R+ S E ++ AVERV Y E+ +EAP V S RPP WPS+
Sbjct: 1257 GLSISYALNVTQTLNWLVRMTSELETNIVAVERVREYAEIQNEAPWVT-SVRPPDDWPSA 1315
Query: 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
G+I+FED +RYRPEL VLHG++ I ++K+GIVGRTGAGKSS+ N LFRIVE GR
Sbjct: 1316 GNIRFEDYKVRYRPELELVLHGVTCDIQSTEKIGIVGRTGAGKSSLTNCLFRIVEAADGR 1375
Query: 967 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 1026
ILID DIA GL DLR L IIPQ PVLFSGT+R NLDPF SDA++W LE AHLK+
Sbjct: 1376 ILIDDIDIATLGLHDLRSRLTIIPQDPVLFSGTLRMNLDPFQTFSDAEIWSVLELAHLKE 1435
Query: 1027 AIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQK 1086
+R GL+ +VSE GEN S+GQRQ +IL+LDEATAAVD+ TD LIQ
Sbjct: 1436 YVRGLPTGLEHEVSEGGENLSLGQRQLLCLARALLRKSRILILDEATAAVDLETDDLIQS 1495
Query: 1087 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1146
TIR EF CT+L IAHRLNTI+D R+++LDSG+++E+D+P ELLS G FS M + G
Sbjct: 1496 TIRREFSHCTVLTIAHRLNTILDSSRVMVLDSGKIVEFDSPNELLSKPGH-FSSMAEDAG 1554
|
|
| UNIPROTKB|Q28689 ABCC2 "Canalicular multispecific organic anion transporter 1" [Oryctolagus cuniculus (taxid:9986)] | Back alignment and assigned GO terms |
|---|
Score = 1186 (422.6 bits), Expect = 9.7e-231, Sum P(2) = 9.7e-231
Identities = 278/706 (39%), Positives = 396/706 (56%)
Query: 458 LSGKTRVLVTNQLHFLSQVDRIILVHEGMVK-EEGTFEDLSNNGELFQKLMENAGKMEEY 516
L K V N F+ D EG V +G+ ED ++ L + E
Sbjct: 846 LLAKKGVFAKNLKMFVKHTDS-----EGEVTVNDGSEEDDDDDSGLISSIEEFPEDSISL 900
Query: 517 VEEKEDG--ETVD--NKTSKPAANGVDNDLPKEASDTRKTKE---GKSVLIKQEERETGV 569
++E+ T+ +++S + N L + T K +E G+ LIK+E ETG
Sbjct: 901 TLKRENSLHRTLSRSSRSSGRRLKSLKNSLKAQNGKTPKEEEVVKGQK-LIKKEFMETGK 959
Query: 570 VSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYWTDQSSLK--THGPLFYN 627
V F + +Y A Y L + S+ WLS WT S+ T+ P
Sbjct: 960 VKFSIYLKYLQAIGWCSIVGIIFA-YVLNSVAFIGSNLWLSAWTSDSNTYNGTNYPASQR 1018
Query: 628 T----IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRI 683
I+ +L Q L L S+W +A+ LH +L++ILRAPM FF+T P+GRI
Sbjct: 1019 DLRIGIFGVLGLAQGLTVLVASFWSASGCAHASNILHKQLLNNILRAPMSFFNTTPIGRI 1078
Query: 684 INRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXX 743
+NRFA D+ +D + + +M ++ST ++I + + + I+P
Sbjct: 1079 VNRFAGDISTVDDTLPQSLRSWMMCFLAIISTLIMICMATPVFAVIIIPLAIIYVAVQVF 1138
Query: 744 XQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVN 803
+T+R+++RLDS+TRSP+Y+ F E ++GL IRA++ R N +D N +
Sbjct: 1139 YVATSRQLRRLDSVTRSPIYSHFTETVSGLPVIRAFEHQQRFLKQNEIGIDTNQKCVSSW 1198
Query: 804 MGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAV 863
+ +NRWLA RLE+VG L+++ +A V+ + +G +LS ALNIT L +
Sbjct: 1199 ITSNRWLAFRLELVGNLVVFSSALMMVIYRDTLSGD-----VVGFVLSNALNITQTLNWL 1253
Query: 864 LRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELP 923
+R+ S E ++ AVER+ YI++ +EAP V + RPP GWP G I+F + +RYRPEL
Sbjct: 1254 VRMTSETETNIVAVERITEYIKVENEAPWVTDK-RPPAGWPHKGEIQFSNYQVRYRPELD 1312
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
VL G++ I +K+G+VGRTGAGKSS+ N LFRI+E G I IDG DIA GL DLR
Sbjct: 1313 LVLKGINCDIKSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGHITIDGIDIASIGLHDLR 1372
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043
L IIPQ PVLFSG++R NLDPF+ +SD ++W ALE AHLK + GL +VSEA
Sbjct: 1373 GKLTIIPQDPVLFSGSLRMNLDPFNNYSDEEIWRALELAHLKSFVAGLQHGLSREVSEAE 1432
Query: 1044 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 1103
+N S+GQRQ KILVLDEATAAVD+ TD LIQ TIR EF CT++ IAHR
Sbjct: 1433 DNLSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDHLIQTTIRNEFSHCTVITIAHR 1492
Query: 1104 LNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 1149
L+TI+D D+I++LD+G ++EY +PEELL + G FS M + +G N
Sbjct: 1493 LHTIMDSDKIMVLDNGNIVEYGSPEELLESAGP-FSLMAKESGIEN 1537
|
|
| UNIPROTKB|F1S8V9 ABCC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 2.2e-229, Sum P(3) = 2.2e-229
Identities = 262/682 (38%), Positives = 390/682 (57%)
Query: 482 VHEGMVKEEGTF-EDLSNNG-ELFQKLMENAGKMEEYVEEKEDGETVD--NKTSKPAANG 537
V E ++E T ED + EL + EN E +T+ +++S
Sbjct: 865 VKEAGPEDEATVNEDSEEDACELMPSVEENPEDAASLKRENSLRQTLSRSSRSSSRRLKS 924
Query: 538 VDNDLPKEASDTRKTKEGKSV----LIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXX 593
+ + L + K +E + V LIK+E +TG V F + +Y A
Sbjct: 925 LKDSLKTRKGNILKEEETEPVKGQKLIKKEFLQTGKVKFSIYLKYLQAIGWCSIVFIVLG 984
Query: 594 CYFLTETLRVSSSTWLSYWTDQSSL--KTHGPLFYNT----IYSLLSFGQVLVTLANSYW 647
+ L + S+ WLS WT S + T+ P ++ L Q + L +
Sbjct: 985 -FMLYSVAFIGSNLWLSAWTGDSKIYNSTNYPTSQRDLRVGVFGALGLAQGIFVLIATLC 1043
Query: 648 LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMG 707
+ +A+ LH +L +ILRAPM FF T P+GRI+NRFA D+ +D + + + ++
Sbjct: 1044 SVYGCTHASSILHTQLLSNILRAPMSFFDTTPIGRIVNRFAGDISTLDDTLPMSLRSWLM 1103
Query: 708 QVSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFG 767
++ST V+I + + + + I+P +T+R+++RLDS+TRSP+Y+ F
Sbjct: 1104 CFLGIISTLVMICLATPVFVIIIIPLGIIYVAVQIFYVATSRQLRRLDSVTRSPIYSHFS 1163
Query: 768 EALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTAT 827
E ++GL IRA++ R N ++D N + + +NRWLA+RLE +G ++++ ++
Sbjct: 1164 ETVSGLPVIRAFEHQQRFLKHNEITIDTNQKCVFSWIISNRWLAVRLEFIGNMIVFCSSL 1223
Query: 828 FAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 887
V+ + T+G +LS ALNIT L ++R+ S E ++ AVER+ YI +
Sbjct: 1224 MMVIYRNTLSGD-----TVGFVLSNALNITQTLNWLVRMTSEIETNIVAVERINEYIHVE 1278
Query: 888 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 947
+EAP V + RPP GWPS G I+F + +RYRPEL VL G++ I ++K+G+VGRTGA
Sbjct: 1279 NEAPWVTDK-RPPDGWPSKGEIQFSNYQVRYRPELDLVLKGITCDIKSTEKIGVVGRTGA 1337
Query: 948 GKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF 1007
GKSS+ N+LFRI+E G+I IDG DIA GL DLR+ L IIPQ P+LFSGT+R NLDPF
Sbjct: 1338 GKSSLTNSLFRILEAAGGQITIDGVDIASIGLHDLREKLTIIPQDPILFSGTLRMNLDPF 1397
Query: 1008 SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKIL 1067
+ +SD +LW+ALE AHLK + LGL +V+E G+N S+GQRQ KIL
Sbjct: 1398 NSYSDEELWKALELAHLKSFVSHLQLGLSYEVTEGGDNLSIGQRQLLCLARALLRKSKIL 1457
Query: 1068 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1127
++DEATAAVD+ TD LIQ TI+ EF CT + IAHRL+TI+D D++++LD+G +++YD+P
Sbjct: 1458 IMDEATAAVDLETDHLIQTTIQTEFSHCTTITIAHRLHTIMDSDKVMVLDNGNIVQYDSP 1517
Query: 1128 EELLSNEGSSFSKMVQSTGAAN 1149
EELL G F M Q G N
Sbjct: 1518 EELLKTPGP-FYYMAQEAGIEN 1538
|
|
| UNIPROTKB|F1PHV0 ABCC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 4.8e-229, Sum P(2) = 4.8e-229
Identities = 258/621 (41%), Positives = 374/621 (60%)
Query: 540 NDLPKEASDTRKTKE----GKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCY 595
N L +T K +E G+ LIK+E +TG V F + +Y A Y
Sbjct: 928 NSLKTRNVNTLKEEEEPVKGQK-LIKKEFIQTGKVKFSIYLKYLRAIGWYLIFLIIFA-Y 985
Query: 596 FLTETLRVSSSTWLSYWTDQSSL--KTHGPLFYNT----IYSLLSFGQ-VLVTLANSYWL 648
+ + S+ WLS WT+ S T+ P +Y +L Q V V +AN
Sbjct: 986 VINSVAYIGSNLWLSAWTNDSKAFNGTNYPASQRDMRIGVYGVLGLAQGVFVLMANLL-S 1044
Query: 649 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQ 708
S +A+ LH +L++IL+APM FF T P GRI+NRFA D+ +D + + ++
Sbjct: 1045 AHGSTHASNILHRQLLNNILQAPMSFFDTTPTGRIVNRFAGDISTVDDTLPQSLRSWILC 1104
Query: 709 VSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGE 768
++ST V+I + + + I+P +T+R++KRLDS+TRSP+Y+ F E
Sbjct: 1105 FLGIISTLVMICTATPVFIIVIIPLSIIYVSIQIFYVATSRQLKRLDSVTRSPIYSHFSE 1164
Query: 769 ALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATF 828
++GLS IRA++ R N +D N + + +NRWLA+RLE++G L+++ ++
Sbjct: 1165 TVSGLSVIRAFEHQQRFLKHNEVGIDTNQKCVFSWIVSNRWLAVRLELIGNLIVFFSSLM 1224
Query: 829 AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 888
V+ + T+G +LS ALNIT L ++R+ S E ++ AVER+ YI++ +
Sbjct: 1225 MVIYKATLSGD-----TVGFVLSNALNITQTLNWLVRMTSEIETNIVAVERINEYIKVEN 1279
Query: 889 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 948
EAP V + RPPPGWPS G I+F + +RYRPEL VL G++ I +K+G+VGRTGAG
Sbjct: 1280 EAPWVTDK-RPPPGWPSKGEIRFNNYQVRYRPELDLVLRGITCDIRSMEKIGVVGRTGAG 1338
Query: 949 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS 1008
KSS+ N LFRI+E G+I+IDG DIA GL DLR+ L IIPQ P+LFSG++R NLDPF+
Sbjct: 1339 KSSLTNGLFRILEAAGGQIIIDGVDIASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFN 1398
Query: 1009 EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILV 1068
+SD ++W+ALE AHLK + LGL +V+EAG+N S+GQRQ KIL+
Sbjct: 1399 HYSDEEIWKALELAHLKTFVAGLQLGLSHEVAEAGDNLSIGQRQLLCLARALLRKSKILI 1458
Query: 1069 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPE 1128
+DEATAAVD+ TD LIQ TI++EF CT + IAHRL+TI+D D+I++LD+G+++EY +P+
Sbjct: 1459 MDEATAAVDLETDHLIQMTIQKEFSHCTTITIAHRLHTIMDSDKIIVLDNGKIVEYGSPQ 1518
Query: 1129 ELLSNEGSSFSKMVQSTGAAN 1149
ELL N G F M + G N
Sbjct: 1519 ELLRNSGP-FYLMAKEAGIEN 1538
|
|
| MGI|MGI:1352447 Abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1178 (419.7 bits), Expect = 1.4e-227, Sum P(2) = 1.4e-227
Identities = 254/600 (42%), Positives = 363/600 (60%)
Query: 559 LIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYWTDQSSL 618
LIK+E ETG V F + +Y A Y L + ++ WLS WT S
Sbjct: 949 LIKKEFVETGKVKFSIYLKYLQAVGWWSLLFIVIF-YVLNYVAFIGTNLWLSAWTSDSEK 1007
Query: 619 KT---HGPLFYNT---IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPM 672
+ + P + ++ L Q + L++S W I + A+K LH +L +ILRAPM
Sbjct: 1008 QNGTDNSPSQRDMRIGVFGALGIAQGIFLLSSSLWSIYACRNASKTLHRQLLTNILRAPM 1067
Query: 673 VFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMP 732
FF T P GRI+NRFA D+ +D + + ++ ++ST V+I + + + + I+P
Sbjct: 1068 SFFDTTPTGRIVNRFAGDISTVDDTLPQTLRSWLLCFFGIVSTLVMICMATPIFIIIIIP 1127
Query: 733 XXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKS 792
+T+R+++RLDS+T+SP+Y+ F E ++GL IRA++ R + K
Sbjct: 1128 LSILYVSVQVFYVATSRQLRRLDSVTKSPIYSHFSETVSGLPVIRAFEHQQRFLANSEKQ 1187
Query: 793 MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSY 852
+D N + + +NRWLAIRLE+VG L+++ +A V+ S T+G +LS
Sbjct: 1188 IDTNQKCVFSWITSNRWLAIRLELVGNLIVFCSALLLVIYKNSLTGD-----TVGFVLSN 1242
Query: 853 ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFE 912
ALNIT L ++R+ S E ++ AVER+ YI + +EAP V + +PP WP G I+F
Sbjct: 1243 ALNITQTLNWLVRMTSEVETNIVAVERINEYINVDNEAPWVTDK-KPPADWPKKGEIQFN 1301
Query: 913 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 972
+ +RYRPEL VL G++ I ++KVG+VGRTGAGKSS+ N LFRI+E G+I+IDG
Sbjct: 1302 NYQVRYRPELDLVLKGITCNIKSTEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGI 1361
Query: 973 DIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 1032
DIA GL DLR L IIPQ P+LFSG +R NLDPF+++SD ++W ALE AHLK +
Sbjct: 1362 DIASIGLHDLRGRLTIIPQDPILFSGNLRMNLDPFNKYSDEEIWRALELAHLKSFVAGLQ 1421
Query: 1033 LGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEF 1092
LGL +V+E G+N S+GQRQ KILVLDEATAAVD+ TD+LIQ TIR EF
Sbjct: 1422 LGLLHEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRNEF 1481
Query: 1093 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQY 1152
CT++ IAHRL+TI+D D+I++LDSG+++EY +PEELLSN G F M + G + +
Sbjct: 1482 SQCTVITIAHRLHTIMDSDKIMVLDSGKIVEYGSPEELLSNMGP-FYLMAKEAGIESVNH 1540
|
|
| UNIPROTKB|F1MIP7 ABCC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1168 (416.2 bits), Expect = 2.7e-226, Sum P(2) = 2.7e-226
Identities = 247/597 (41%), Positives = 360/597 (60%)
Query: 559 LIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYWTDQSSL 618
LIK+E +TG V F + +Y A + + + S+ WLS WT S +
Sbjct: 949 LIKKEFVQTGKVKFSIYLKYLQAIGWCSIVFILLG-FVIYYVAFIGSNLWLSAWTSDSKI 1007
Query: 619 K--THGPLFYNT----IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPM 672
T+ P +Y L Q L + W + +A+ LH +L++ILRAPM
Sbjct: 1008 YNGTNYPSSQRDLRVGVYGALGVAQGLFVFIANIWSVYGCNHASNILHKQLLNNILRAPM 1067
Query: 673 VFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMP 732
FF T P+GRI+NRFA DL +D + + + + ++ST V+I + + + + I+P
Sbjct: 1068 SFFDTTPIGRIVNRFAGDLFTVDDTLPMSLRSCVLCFLGIISTLVMICLATPIFVVVIIP 1127
Query: 733 XXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKS 792
+T+R+++RLDS+TRSP+Y+ F E ++GLS IRA++ R + +
Sbjct: 1128 LGIIYVSVQIFYVATSRQLRRLDSVTRSPIYSHFSETVSGLSVIRAFEHQQRFLKQSETA 1187
Query: 793 MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSY 852
+D N + + +NRWLA+RLE++G L+++ + V+ + T+G +LS
Sbjct: 1188 IDTNQKCVFSWITSNRWLAVRLELIGNLIVFFASLMMVIYRNNLSGD-----TVGFVLSN 1242
Query: 853 ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFE 912
ALNIT L ++R+ S E ++ AVER+ YI + +EAP V + RPP GWPS G I+F
Sbjct: 1243 ALNITQTLNWLVRMTSEIETNIVAVERITEYINVENEAPWVTDK-RPPEGWPSKGEIQFS 1301
Query: 913 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 972
+ +RYRPEL VL G++ I ++K+G+VGRTGAGKSS+ N LFRI+E G+I IDG
Sbjct: 1302 NYQVRYRPELDLVLKGITCDIKSTEKIGVVGRTGAGKSSLTNCLFRILEAAGGQITIDGV 1361
Query: 973 DIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 1032
DIA GL DLR+ L IIPQ P+LFSG++R NLDPF+ +SD ++W+ALE +HLK +
Sbjct: 1362 DIASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKALELSHLKSFVAGLQ 1421
Query: 1033 LGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEF 1092
GL +V+E G+N S+GQRQ KIL++DEATAAVD+ TD LIQ TI+ EF
Sbjct: 1422 AGLSYEVTEGGDNLSIGQRQLLCLARALLRKSKILIMDEATAAVDLETDQLIQTTIQTEF 1481
Query: 1093 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 1149
CT + IAHRL+TI+D D++++LDSG+++EYD+PEELL N G F M Q G N
Sbjct: 1482 SHCTTITIAHRLHTIMDSDKVMVLDSGKIVEYDSPEELLKNPGP-FYFMAQEAGIEN 1537
|
|
| UNIPROTKB|E1C6S5 ABCC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1164 (414.8 bits), Expect = 1.5e-225, Sum P(2) = 1.5e-225
Identities = 278/686 (40%), Positives = 404/686 (58%)
Query: 488 KEEGTFEDLSNNGELFQKLMENAG--KMEEYVEEKEDGETVDNKTSKPAA---NGVDNDL 542
+EEG E+ + +G +E G ME VEE D + V + A+ +
Sbjct: 884 QEEGAAEETTADG------IEEQGDESMEPCVEEGPD-DVVTMTLKREASIHRKEFTRSI 936
Query: 543 PKEASDTRKTKEGKSV-----LIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFL 597
+++ + K +E + LI++E ETG V F + RY A Y
Sbjct: 937 STQSTTSVKAQEEPNKIKGQRLIEKEAVETGKVKFSMYLRYLRAVGLGFSFCVAMS-YVG 995
Query: 598 TETLRVSSSTWLSYWTDQSSL---KTHGPLFYNTIYSLLSFGQVLVTLANSYWL--IISS 652
V ++ WLS WTD + +T+ P+ + + FG + V+ A +L I+SS
Sbjct: 996 EYAAYVGTNLWLSAWTDDAERYRNETY-PVQQRDL-RIGVFGALGVSQALFLFLATILSS 1053
Query: 653 ---LYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAV----FVNMF 705
+ A++ +H+ +L +ILR PM FF T P GRI+NRFAKD+ +D + + ++N F
Sbjct: 1054 HGAMRASRIVHEQLLSNILRVPMSFFDTTPTGRIVNRFAKDIFTVDETIPMSFRSWLNCF 1113
Query: 706 MGQVSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQ 765
MG ++ST ++I + + I+P ST+R+++RLDS+TRSP+Y+
Sbjct: 1114 MG----IISTLLMIALATPFFTVVIVPLGIFYYFVLRFYISTSRQLRRLDSVTRSPIYSH 1169
Query: 766 FGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLT 825
FGE ++GLS IRAY R N ++MD N + + +NRWLAIRLE VG L+++ +
Sbjct: 1170 FGETVSGLSVIRAYGHQQRFLQQNERTMDINQKSVYSWIVSNRWLAIRLEFVGSLVVFFS 1229
Query: 826 ATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE 885
A AV+ S E +GL +S ALN+T L ++R++S E ++ AVERV Y +
Sbjct: 1230 ALLAVISRNSLEG-----GIVGLSVSSALNVTQTLNWLVRVSSELETNIVAVERVHEYTK 1284
Query: 886 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRT 945
+ EAP V + RPP WPS G I+F D +RYRPEL VL G++ +I ++KVG+VGRT
Sbjct: 1285 VKREAPWVTDK-RPPHSWPSKGEIQFVDYKVRYRPELELVLQGITCSIGSTEKVGVVGRT 1343
Query: 946 GAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD 1005
GAGKSS+ N LFR++E G+I+IDG DIA GL DLR+ L IIPQ PVLF+GT+R NLD
Sbjct: 1344 GAGKSSLTNCLFRVLEAAGGKIIIDGLDIATIGLHDLRQNLTIIPQDPVLFTGTLRMNLD 1403
Query: 1006 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXK 1065
PF +++D ++W+ALE AHLK ++ L VSE GEN SVGQRQ K
Sbjct: 1404 PFDQYTDEEVWKALELAHLKAYVQELPERLQHVVSEGGENLSVGQRQLVCLARALLRKAK 1463
Query: 1066 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1125
IL+LDEATAAVD+ TD LIQ TIR F CT+L IAHRL+TI+D +R++++ +G+++E+D
Sbjct: 1464 ILILDEATAAVDLETDHLIQTTIRSAFADCTVLTIAHRLHTIMDSNRVMVMHAGKIVEFD 1523
Query: 1126 TPEELLSNEGSSFSKMVQSTGAANAQ 1151
+PE+LL + S FS M + G N +
Sbjct: 1524 SPEKLLQKQ-SVFSAMAKDAGITNTE 1548
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q42093 | AB2C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.8151 | 0.9969 | 0.7942 | yes | no |
| Q54U44 | ABCCC_DICDI | No assigned EC number | 0.3956 | 0.8832 | 0.8631 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_fgenesh4_pg.C_LG_XI0622 | multidrug resistance protein ABC transporter family (1617 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1293 | |||
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.0 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-128 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-101 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-101 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 5e-97 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-79 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-77 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-75 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-74 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-67 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-66 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-64 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 5e-64 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-63 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 6e-59 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 8e-57 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-56 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 9e-56 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-55 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-55 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-54 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-54 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-53 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 8e-53 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 4e-52 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 5e-52 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 8e-52 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-51 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-51 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-50 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-49 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-49 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-49 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-48 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-47 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-46 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-45 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-44 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-43 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-43 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-41 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-40 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-40 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-40 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-40 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-39 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-39 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-39 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 4e-38 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-38 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-38 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-38 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-36 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 9e-36 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-35 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-35 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-34 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 8e-34 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-33 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-33 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-33 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-33 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-32 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 9e-32 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-31 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 5e-31 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-31 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 9e-31 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-30 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-30 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 6e-30 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 8e-30 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-30 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-30 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-29 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-29 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-29 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-29 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-28 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-28 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-28 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 3e-28 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 5e-28 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-27 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-27 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-26 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-26 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-26 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 7e-26 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-26 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 8e-26 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-25 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-25 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-25 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-25 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-25 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-25 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-25 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 8e-25 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 9e-25 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-24 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-24 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-24 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-24 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 6e-24 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-24 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 8e-24 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-23 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-23 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-23 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-23 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-23 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-23 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-23 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 9e-23 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-22 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-22 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-22 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-22 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-22 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-22 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-22 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-22 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 5e-22 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-22 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 8e-22 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-22 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 9e-22 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-21 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-21 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-21 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-21 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-21 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-21 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-21 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-21 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-21 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-20 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-20 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-20 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-20 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-20 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-20 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-20 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-20 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-20 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-19 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-19 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-19 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-19 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-19 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-19 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-19 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-19 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-19 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-19 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-19 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-19 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-19 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-19 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-19 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 6e-19 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 6e-19 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 8e-19 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 9e-19 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-18 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-18 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-18 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-18 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-18 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-18 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-18 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-18 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 6e-18 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-18 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 6e-18 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 9e-18 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-17 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-17 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-17 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-17 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-17 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 4e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-17 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-16 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-16 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-16 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-16 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-16 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-16 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 6e-16 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-16 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 8e-16 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 9e-16 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 9e-16 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-15 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-15 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-15 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-15 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-15 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-15 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-15 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-15 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-15 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-15 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-15 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-15 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 4e-15 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-15 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-15 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 6e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-15 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 7e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-15 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 8e-15 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 9e-15 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 9e-15 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 9e-15 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 9e-15 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-14 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-14 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-14 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-14 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-14 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-14 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-14 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-14 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-14 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-14 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-14 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-14 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 5e-14 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 6e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 6e-14 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 6e-14 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-14 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-14 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-14 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 9e-14 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-13 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-13 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 1e-13 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-13 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-13 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-13 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-13 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-13 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-13 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-13 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-13 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-13 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-13 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-13 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-13 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-13 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-13 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-13 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-13 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-13 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 7e-13 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 7e-13 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 7e-13 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 8e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 8e-13 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 9e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 9e-13 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 9e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-12 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-12 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-12 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-12 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-12 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-12 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-12 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-12 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-12 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-12 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-12 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-12 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-12 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 4e-12 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 4e-12 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 4e-12 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-12 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-12 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 4e-12 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 5e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-12 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 6e-12 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 7e-12 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 7e-12 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 7e-12 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 7e-12 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 7e-12 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 7e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 9e-12 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 9e-12 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 9e-12 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 9e-12 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-11 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-11 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-11 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-11 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-11 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-11 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-11 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-11 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 4e-11 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-11 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-11 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-11 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 4e-11 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 4e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-11 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 5e-11 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 5e-11 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 6e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-11 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 6e-11 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 7e-11 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 7e-11 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 7e-11 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 7e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 7e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 8e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 8e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 9e-11 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 9e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-10 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-10 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-10 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-10 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-10 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-10 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-10 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-10 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-10 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 5e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-10 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-10 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 5e-10 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 6e-10 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 6e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 6e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 7e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 7e-10 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 9e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-10 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-09 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-09 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 1e-09 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-09 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-09 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-09 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-09 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-09 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-09 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-09 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-09 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-09 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-09 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-09 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 3e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-09 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-09 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-09 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-09 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-09 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-09 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 5e-09 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-09 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 5e-09 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 6e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-09 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 7e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 7e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 8e-09 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 8e-09 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 9e-09 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 9e-09 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-08 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-08 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-08 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-08 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-08 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-08 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-08 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-08 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-08 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 4e-08 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-08 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-08 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 4e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 5e-08 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 6e-08 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 6e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 6e-08 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-08 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 7e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 7e-08 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 7e-08 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 7e-08 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 8e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 8e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 8e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 9e-08 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 9e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 9e-08 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-07 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-07 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-07 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-07 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-07 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-07 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 5e-07 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 7e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 8e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 8e-07 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 9e-07 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 9e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-06 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-06 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-06 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-06 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-06 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-06 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-06 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 4e-06 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 4e-06 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-06 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-06 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 7e-06 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 7e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 7e-06 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 8e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 8e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-06 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 8e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-06 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 9e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 9e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-05 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-05 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 1e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-05 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-05 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-05 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-05 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-05 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 4e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 8e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 8e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 8e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 8e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 8e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 8e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-04 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-04 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-04 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 6e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 6e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 7e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 7e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 7e-04 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 8e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 8e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 8e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 9e-04 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 0.001 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.001 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.001 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 0.002 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.002 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 0.002 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.003 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 0.004 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.004 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 0.004 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 2716 bits (7041), Expect = 0.0
Identities = 1120/1293 (86%), Positives = 1210/1293 (93%), Gaps = 1/1293 (0%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
MQ PAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLR+THE
Sbjct: 331 MQNGEPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHE 390
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 120
RK F SGKITNLMTTDAE LQQ+CQ LHTLWSAPFRIII++VLLY +LGVASL+G+L+L
Sbjct: 391 GRKKFTSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLML 450
Query: 121 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
V MFP+QTFIIS+MQKLTKEGLQRTDKRIGLMNE+LAAMD VKCYAWENSFQSKVQ VR+
Sbjct: 451 VLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRD 510
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
DELSWFRKAQ L+A NSFILNSIPVLVTVVSFG+FTLLGGDLTPARAFTSLSLFAVLRFP
Sbjct: 511 DELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFP 570
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
LFMLPN+ITQ VNANVSLKR+EE LLAEE++LLPNPPL GLPAISI+NGYFSWDSKAER
Sbjct: 571 LFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAER 630
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
PTL NINLD+PVGSLVAIVG TGEGKTSLISAMLGELPP SDAS VIRGTVAYVPQVSWI
Sbjct: 631 PTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWI 690
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
FNATVRDNILFGS F+P RYE+AIDVT+LQHDLDLLPGGD+TEIGERGVNISGGQKQRVS
Sbjct: 691 FNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVS 750
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
MARAVYSNSDV+IFDDPLSALDAHVGRQVFD+CI+ EL GKTRVLVTNQLHFLSQVDRII
Sbjct: 751 MARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRII 810
Query: 481 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDN 540
LVHEGM+KEEGT+E+LSNNG LFQKLMENAGKMEEYVEE E D +SKP ANG N
Sbjct: 811 LVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEE-NGEEEDDQTSSKPVANGNAN 869
Query: 541 DLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTET 600
+L K++S +K+KEGKSVLIKQEERETGVVS+KVL RYK+ALGG WVV+IL LCY LTE
Sbjct: 870 NLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEV 929
Query: 601 LRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLH 660
RVSSSTWLS WTDQ + KTHGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYAAKRLH
Sbjct: 930 FRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLH 989
Query: 661 DAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIG 720
DAML SILRAPM FFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF+GQ+ QLLSTFVLIG
Sbjct: 990 DAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIG 1049
Query: 721 IVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 780
IVST+SLWAIMPLL+LFY AYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK
Sbjct: 1050 IVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 1109
Query: 781 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 840
AYDRMA+ING+SMD NIR+TLVNM +NRWLAIRLE +GGLMIWLTA+FAV+QNG AENQ
Sbjct: 1110 AYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQA 1169
Query: 841 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 900
AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG YI+LPSEAPLVIE+NRPP
Sbjct: 1170 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPP 1229
Query: 901 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 960
PGWPSSGSIKFEDVVLRYRPELPPVLHGLSF I PS+KVGIVGRTGAGKSSMLN LFRIV
Sbjct: 1230 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV 1289
Query: 961 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE 1020
ELERGRILIDG DI+KFGLMDLRK+LGIIPQ+PVLFSGTVRFNLDPF+EH+DADLWE+LE
Sbjct: 1290 ELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLE 1349
Query: 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1080
RAHLKD IRRNSLGLDA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRT
Sbjct: 1350 RAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409
Query: 1081 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140
DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIL+LD+GRV+E+DTPE LLSNEGS+FSK
Sbjct: 1410 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSK 1469
Query: 1141 MVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSS 1200
MVQSTGAANAQYLRSLV GG+ + REE+K +DGQR+WLASSRWAAAAQ+ALAVSLTSS
Sbjct: 1470 MVQSTGAANAQYLRSLVFGGDEDRLAREESKALDGQRKWLASSRWAAAAQFALAVSLTSS 1529
Query: 1201 HNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMI 1260
NDLQ LE+ED+N+IL+KTKDAV+TLQ VLEGKHDKEI+ESLNQ +V DGWWS+LYRM+
Sbjct: 1530 QNDLQSLEIEDENSILEKTKDAVITLQSVLEGKHDKEIDESLNQRQVPRDGWWSSLYRMV 1589
Query: 1261 EGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1293
EGL+VMSRLARNR+ QSD++ E +SIDWD+VEM
Sbjct: 1590 EGLAVMSRLARNRMQQSDHNFEGKSIDWDNVEM 1622
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 1988 bits (5152), Expect = 0.0
Identities = 869/1158 (75%), Positives = 1004/1158 (86%), Gaps = 4/1158 (0%)
Query: 1 MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE 60
MQ+ PAW+GY+YAF IF GV GVLCE+QYFQNV RVGFRLRSTLVAA+F KSLR+THE
Sbjct: 331 MQEGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHE 390
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 120
ARKNFASGK+TN++TTDA LQQ+ + LH LWSAPFRII+S+VLLY +LGVASL G+L+L
Sbjct: 391 ARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLIL 450
Query: 121 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
+ P+QT I+ +M+KLTKEGLQ TDKR+G++NEILA+MD VKCYAWE SF+S++Q +RN
Sbjct: 451 FLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRN 510
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 240
+ELSWFRKAQ L+A NSFILNSIPV+VT+VSFG+F LLGGDLTPARAFTSLSLFAVLR P
Sbjct: 511 EELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSP 570
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 300
L MLPN+++QVVNANVSL+R+EE LL+EE+IL NPPL G PAISI+NGYFSWDSK +
Sbjct: 571 LNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSK 630
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
PTL +INL+IPVGSLVAIVGGTGEGKTSLISAMLGEL +S VIRG+VAYVPQVSWI
Sbjct: 631 PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWI 690
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
FNATVR+NILFGS FE RY +AIDVT+LQHDLDLLPG D+TEIGERGVNISGGQKQRVS
Sbjct: 691 FNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVS 750
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
MARAVYSNSD++IFDDPLSALDAHV QVFD C++ EL GKTRVLVTNQLHFL +DRII
Sbjct: 751 MARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRII 810
Query: 481 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDN 540
LV EGM+KEEGTF +LS +G LF+KLMENAGKM+ E + E + + V
Sbjct: 811 LVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTID-VSE 869
Query: 541 DLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTET 600
+ T++ K G+SVL+KQEERETG++S+ VL RY A+GGLWVV+ILL+CY TE
Sbjct: 870 ---RNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEV 926
Query: 601 LRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLH 660
LRVSSSTWLS WTDQS+ K++ P FY +Y+LL FGQV VT NS+WLI SSL+AAKRLH
Sbjct: 927 LRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLH 986
Query: 661 DAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIG 720
DAML+SILRAPM+FFHTNP GR+INRF+KD+GDIDRNVA +NMFM Q+ QLLSTF LIG
Sbjct: 987 DAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIG 1046
Query: 721 IVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 780
VST+SLWAIMPLL+LFYAAYLYYQST+REV+RLDS+TRSP+YAQFGEALNGLS+IRAYK
Sbjct: 1047 TVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYK 1106
Query: 781 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 840
AYDRMA INGKSMD NIR+TL N +NRWL IRLE +GG+MIWLTATFAV++NG+AENQ
Sbjct: 1107 AYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQA 1166
Query: 841 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 900
FASTMGLLLSY LNIT+LL+ VLR AS AENSLN+VERVGNYI+LPSEA +IE+NRP
Sbjct: 1167 GFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPV 1226
Query: 901 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 960
GWPS GSIKFEDV LRYRP LPPVLHGLSF + PS+KVG+VGRTGAGKSSMLN LFRIV
Sbjct: 1227 SGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV 1286
Query: 961 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE 1020
ELE+GRI+ID D+AKFGL DLR++L IIPQSPVLFSGTVRFN+DPFSEH+DADLWEALE
Sbjct: 1287 ELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALE 1346
Query: 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1080
RAH+KD I RN GLDA+VSE GENFSVGQRQLLSL+RALLRRSKILVLDEATA+VDVRT
Sbjct: 1347 RAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406
Query: 1081 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140
D+LIQ+TIREEFKSCTML+IAHRLNTIIDCD+IL+L SG+VLEYD+P+ELLS + S+F +
Sbjct: 1407 DSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFR 1466
Query: 1141 MVQSTGAANAQYLRSLVL 1158
MV STG ANAQYL +LV
Sbjct: 1467 MVHSTGPANAQYLSNLVF 1484
|
Length = 1495 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 960 bits (2484), Expect = 0.0
Identities = 470/1180 (39%), Positives = 704/1180 (59%), Gaps = 50/1180 (4%)
Query: 6 PAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNF 65
P W GY Y +FV L L QYF G R+++ ++ AV+RK+L IT+ ARK+
Sbjct: 353 PDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSS 412
Query: 66 ASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFP 125
G+I NLM+ DA++ + ++ +WSAP ++I++L L+ LG + L G ++V M P
Sbjct: 413 TVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVP 472
Query: 126 VQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSW 185
+ + + + ++ D RI LMNEIL + +K YAWE +F KV+ +R +EL
Sbjct: 473 LNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKV 532
Query: 186 FRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFPLFM 243
+K+ +L A +F P LV +++F ++ + + L +AF SL+LF +LRFPL +
Sbjct: 533 LKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNI 592
Query: 244 LPNMITQVVNANVSLKRMEEFLLAEEKILLPNP----PLTSGLP-AISIRNGYFSWDSKA 298
LP +I+ +V A+VSLKR+ FL EE L P+ + G +I++ N F+W ++
Sbjct: 593 LPMVISSIVQASVSLKRLRIFLSHEE--LEPDSIERRTIKPGEGNSITVHNATFTW-ARD 649
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 358
PTL I IP G+LVA+VG G GK+SL+SA+L E+ V + ++G+VAYVPQ +
Sbjct: 650 LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EGHVHMKGSVAYVPQQA 708
Query: 359 WIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 418
WI N ++R+NILFG A Y++ ++ +L DL++LP GD TEIGE+GVN+SGGQKQR
Sbjct: 709 WIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR 768
Query: 419 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQV 476
VS+ARAVYSN+D+++FDDPLSA+DAHVG+ +F+ I G L KTR+LVT+ + +L QV
Sbjct: 769 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV 828
Query: 477 DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDG---ETVDNKTSKP 533
D II++ G + E G++++L F + + E+ ++ + + K +K
Sbjct: 829 DVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKL 888
Query: 534 AANG------VDNDLPKEASDTRKTKEGKS-------------------VLIKQEERETG 568
NG V L ++ S + +S L++ ++ +TG
Sbjct: 889 IENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTG 948
Query: 569 VVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSL--KTHGPLFY 626
V V Y A+G L++ + + + ++S+ WLS WTD + +
Sbjct: 949 QVELSVYWDYMKAIG-LFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLR 1007
Query: 627 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINR 686
++Y L Q S + I + A++ LH +LH+ LR+PM FF P G ++NR
Sbjct: 1008 LSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNR 1067
Query: 687 FAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 746
F+K+L +D + + MFMG + ++ ++I + + ++ I PL LL++ +Y +
Sbjct: 1068 FSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVA 1127
Query: 747 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGA 806
++R++KRL+S++RSPVY+ F E L G+S IRA++ +R + +D+N + ++ A
Sbjct: 1128 SSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVA 1187
Query: 807 NRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRL 866
NRWLA+RLE VG ++ A FAV+ S A +GL +SY+L +T L ++R+
Sbjct: 1188 NRWLAVRLECVGNCIVLFAALFAVISRHSLS-----AGLVGLSVSYSLQVTFYLNWLVRM 1242
Query: 867 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVL 926
+S E ++ AVER+ Y E EAP I+ PP GWP G ++F + LRYR +L VL
Sbjct: 1243 SSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVL 1302
Query: 927 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 986
++ TI +KVGIVGRTGAGKSS+ LFRI E G I+IDG +IAK GL DLR +
Sbjct: 1303 RHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362
Query: 987 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 1046
IIPQ PVLFSG++R NLDPFS++SD ++W ALE AHLK + LD + +E GEN
Sbjct: 1363 TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENL 1422
Query: 1047 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 1106
SVGQRQL+ L+RALLR++KILVLDEATAAVD+ TD LIQ TIR +F+ CT+L IAHRLNT
Sbjct: 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNT 1482
Query: 1107 IIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1146
I+D R+++LD G V E+ P LL G F M + G
Sbjct: 1483 IMDYTRVIVLDKGEVAEFGAPSNLLQQRG-IFYSMAKDAG 1521
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 637 bits (1645), Expect = 0.0
Identities = 323/900 (35%), Positives = 493/900 (54%), Gaps = 58/900 (6%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 362
L ++++ +P G L ++G TG GK++L+ ++L + +S+ ++AYVPQ +WI N
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-ISEGRVWAERSIAYVPQQAWIMN 734
Query: 363 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 422
ATVR NILF + AR A+ V+ L+ DL L GG TEIGE+GVN+SGGQK RVS+A
Sbjct: 735 ATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLA 794
Query: 423 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 482
RAVY+N DV++ DDPLSALDAHVG +V + C G L+GKTRVL T+Q+H + + D ++ +
Sbjct: 795 RAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVAL 854
Query: 483 HEGMVKEEGTFEDL---SNNGELFQKLMENAGKMEEYVE-EKEDGETVDNKTSKPAANGV 538
+G V+ G+ D S L +L EN E + E + +
Sbjct: 855 GDGRVEFSGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVA 914
Query: 539 DNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLT 598
+ E D L+ +EE+ +G V + Y GGL +L + +T
Sbjct: 915 KQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVT 974
Query: 599 ETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKR 658
E + VSS WLS W+ +S + Y + G VL+ + S A +R
Sbjct: 975 ELVTVSSGVWLSMWSTRSFKLS------AATYLYVYLGIVLLGTFSVPLRFFLSYEAMRR 1028
Query: 659 ----LHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLS 714
+H +L S+ R M FF T PLGRI+NRF++D+ +D + M + Q L
Sbjct: 1029 GSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNT----LPMSYLYLLQCLF 1084
Query: 715 TFVLIGIVSTMS----LWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEAL 770
+ +V++ S L A++P L+Y +Y S RE++R+ S+ +SPV+ EAL
Sbjct: 1085 SICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEAL 1144
Query: 771 NGLSTIRAYKAYDRMADINGKSMDK-NIRYTLVNM--GANRWLAIRLEIVGGLMIWLTAT 827
G +TI AY + + +++ + ++ Y+ + ANRWL +R+E + +++ + A
Sbjct: 1145 QGSATI---TAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIAL 1201
Query: 828 FAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI-EL 886
V+ + + L L+ A+ T+ L ++R + E +N+VER+ Y E+
Sbjct: 1202 IGVIGTMLRATSQEIG-LVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEV 1260
Query: 887 PSEA-----------------------PLVIESNRPPPGWP---SSGSIKFEDVVLRYRP 920
P E +VIE P P +GS+ FE V +RYR
Sbjct: 1261 PHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYRE 1320
Query: 921 ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 980
LP VL G+SF I P +KVGIVGRTG+GKS++L T R+VE+ G I ++G +I +GL
Sbjct: 1321 GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLR 1380
Query: 981 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 1040
+LR+ +IPQ PVLF GTVR N+DPF E S A++W ALE L++ + S G+D++V
Sbjct: 1381 ELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVL 1440
Query: 1041 EAGENFSVGQRQLLSLSRALLRR-SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 1099
E G N+SVGQRQL+ ++RALL++ S +++DEATA +D D IQ T+ F + T++
Sbjct: 1441 EGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVIT 1500
Query: 1100 IAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLG 1159
IAHRL+T+ D+I+++D G V E +P EL+ N S F MV++ G + A+ LV
Sbjct: 1501 IAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSEAKRFLQLVGR 1560
|
Length = 1560 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 393 bits (1013), Expect = e-128
Identities = 152/221 (68%), Positives = 178/221 (80%)
Query: 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
G I+F++V LRYRP LPPVL +SF+I P +KVGIVGRTG+GKSS+L LFR+VEL G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 967 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 1026
ILIDG DI+K GL DLR + IIPQ PVLFSGT+R NLDPF E+SD +LW+ALER LK+
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1027 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1086
+ GLD V E GEN SVGQRQLL L+RALLR+SKILVLDEATA+VD TDALIQK
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1087 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1127
TIRE FK CT+L IAHRL+TIID DRIL+LD GRV+E+D+P
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 333 bits (856), Expect = e-101
Identities = 172/565 (30%), Positives = 280/565 (49%), Gaps = 13/565 (2%)
Query: 586 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANS 645
++L+ +L L+ L + + D L + LL+ ++ S
Sbjct: 14 KLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQS 73
Query: 646 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF 705
Y L + +LR P+ FF G +I+R D+ + V+ + +
Sbjct: 74 YLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLV 133
Query: 706 MGQVSQLLSTFVLIGIVS-TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYA 764
+ L+ + VL+ +S ++L ++ L LL +R++ R + A
Sbjct: 134 FTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLS-LLARKSRKLSRRVREALGELNA 192
Query: 765 QFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL 824
+ E+L+G+ I+A+ A DR ++ ++ R L LA + ++ L L
Sbjct: 193 RLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVL 252
Query: 825 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI 884
+ + + Y L + + + + + SL + + A ER+
Sbjct: 253 VLALGGFL---VLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERL---F 306
Query: 885 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGR 944
EL E P V + P + GSI+FE+V Y + PVL +SF+I P +KV IVG
Sbjct: 307 ELLDEEPEVEDPPDPLK--DTIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGP 363
Query: 945 TGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 1004
+G+GKS+++ L R+ + G ILIDG DI L LRK +GI+ Q P+LFSGT+R N+
Sbjct: 364 SGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENI 423
Query: 1005 DPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1063
+ +D ++ EAL+ A+ + I G D V E G N S GQRQ L+++RALLR
Sbjct: 424 ALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483
Query: 1064 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1123
IL+LDEAT+A+D T+ALIQ +++ K T LIIAHRL+TI + DRI++LD+GR++E
Sbjct: 484 PPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVE 543
Query: 1124 YDTPEELLSNEGSSFSKMVQSTGAA 1148
T EELL+ G ++++ Q+ G A
Sbjct: 544 RGTHEELLAKGG-LYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 319 bits (820), Expect = e-101
Identities = 111/204 (54%), Positives = 153/204 (75%), Gaps = 4/204 (1%)
Query: 285 ISIRNGYFSWDSKAER--PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 342
IS+ + F+WDS + TL +INL++P G LVAIVG G GK+SL+SA+LGEL +S
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 343 ASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 402
+ +V G++AYV Q WI N T+R+NILFG F+ RYEK I +L+ DL++LP GD+T
Sbjct: 61 SVSVP-GSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLT 119
Query: 403 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GK 461
EIGE+G+N+SGGQKQR+S+ARAVYS++D+++ DDPLSA+DAHVGR +F+ CI G L K
Sbjct: 120 EIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNK 179
Query: 462 TRVLVTNQLHFLSQVDRIILVHEG 485
TR+LVT+QL L D+I+++ G
Sbjct: 180 TRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 308 bits (791), Expect = 5e-97
Identities = 126/225 (56%), Positives = 158/225 (70%), Gaps = 18/225 (8%)
Query: 903 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 962
WP G I+ E++ +RY P+LPPVL +SF + +K+GIVGRTGAGKS+++ LFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 963 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 1022
E G+I IDG DI+ L DLR L IIPQ P LFSGT+R NLDPF E+SD +++ AL
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-- 118
Query: 1023 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1082
VSE G N S GQRQLL L+RALL+R ++LVLDEATA++D TDA
Sbjct: 119 ----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 1083 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1127
LIQKTIREEF + T+L IAHRL TIID D+IL++D+G V EYD P
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 286 bits (734), Expect = 5e-79
Identities = 183/635 (28%), Positives = 317/635 (49%), Gaps = 48/635 (7%)
Query: 545 EASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVS 604
E S+ ++ K + E ++ RY L VLI L FL E
Sbjct: 826 EISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIFLAEVAASL 885
Query: 605 SSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYW----------------- 647
WL + + S V++T ++Y+
Sbjct: 886 LGLWLITDNPSAPNYVDQQ--HANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGF 943
Query: 648 -----LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFV 702
L+ + L +KRLH+ MLHS+L+APM +T GRI+NRF KD+ ID + + +
Sbjct: 944 FRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTL 1003
Query: 703 NMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPV 762
F+ +L ++ ++ A +P+ ++F Y+ T++++K+L+S RSP+
Sbjct: 1004 FDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPI 1063
Query: 763 YAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI 822
++ +L GL TIRA+ + K+++ + + + RW +R++I+ +
Sbjct: 1064 FSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIF-VFF 1122
Query: 823 WLTATF-AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 881
++ TF A+ N E + +G++L+ A+NI S L + + + + +V RV
Sbjct: 1123 FIAVTFIAIGTNQDGEGE------VGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVF 1176
Query: 882 NYIELPSEAP--------------LVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLH 927
+I+LP E P LVIE+ WPS G + + + +Y VL
Sbjct: 1177 KFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQ 1236
Query: 928 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987
LSF++ +VG++GRTG+GKS++L+ L R++ E G I IDG L RK G
Sbjct: 1237 DLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRKAFG 1295
Query: 988 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 1047
+IPQ +FSGT R NLDP+ + SD ++W+ E LK I + LD + + G S
Sbjct: 1296 VIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLS 1355
Query: 1048 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 1107
G +QL+ L+R++L ++KIL+LDE +A +D T +I+KT+++ F +CT+++ HR+ +
Sbjct: 1356 NGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEAL 1415
Query: 1108 IDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1142
++C + L+++ V +YD+ ++LL NE S F + +
Sbjct: 1416 LECQQFLVIEGSSVKQYDSIQKLL-NETSLFKQAM 1449
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 271 bits (696), Expect = 1e-77
Identities = 149/523 (28%), Positives = 251/523 (47%), Gaps = 44/523 (8%)
Query: 632 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDL 691
L + + L+ L +Y + L +LR P+ +F +G II+R
Sbjct: 202 LAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV---- 257
Query: 692 GDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW------AIMPLL-LLFYAAYLYY 744
++++ + + LL + + ++ S A +PL L+
Sbjct: 258 RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLL 317
Query: 745 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRM----ADINGKSMDKNIRYT 800
+ R++ + + E + G+ T++A A R + K ++ +
Sbjct: 318 RRKTRKLIEESAEQ----QSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTE 373
Query: 801 LVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE-------AFASTMGLLLSYA 853
+ + N ++ ++ L++W A + E AF G +S
Sbjct: 374 KLALILNTIKSLLQQLSSVLILWFGAILVL-------EGELTLGQLVAFNMLAGYFISPI 426
Query: 854 LNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFED 913
++ L T + A+ER+G+ ++ P E G I+FE+
Sbjct: 427 TRLSQLWTDFQQA-------KVALERLGDILDTPPE---QEGDKTLIHLPKLQGEIEFEN 476
Query: 914 VVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 973
V RY P+ PPVL LS IPP +KV IVGR+G+GKS++L L + + ++GRIL+DG D
Sbjct: 477 VSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536
Query: 974 IAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNS 1032
+ L LR+ +G + Q P LFSG++R N+ + +D ++ EA + A + I
Sbjct: 537 LNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLP 596
Query: 1033 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 1092
+G D V E G N S GQRQ L+L+RALL + KIL+LDEAT+A+D T+A+I + + +
Sbjct: 597 MGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656
Query: 1093 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
+ T++IIAHRL+TI DRI++LD G+++E + EELL+ G
Sbjct: 657 QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGG 699
|
Length = 709 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 1e-75
Identities = 119/238 (50%), Positives = 165/238 (69%)
Query: 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
G IK D+ +RY L PVL + I P KVGI GRTG+GKSS+ FR+V++ G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 967 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 1026
I+IDG DI+K L LR L II Q P+LFSG++RFNLDP + +D LWEALE A LK+
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1027 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1086
++ GLDA V+E GENFSVGQRQL L+RA +R+S IL++DEATA++D+ T+ ++QK
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1087 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1144
+ F T++ IAHR++TI+D D +L+L G ++E DTPE LL+ E F+ +V++
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 246 bits (631), Expect = 1e-74
Identities = 97/230 (42%), Positives = 147/230 (63%), Gaps = 2/230 (0%)
Query: 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
G I+FE+V Y + P VL ++F+I P + V IVG TGAGK++++N L R + ++G+
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 967 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLW-EALERAHLK 1025
ILIDG DI LR ++G++ Q LFSGT+ N+ ++ + EA + A
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1085
D I + G D + E G N S G+RQLL+++RA+LR KIL+LDEAT+ +D T+ LIQ
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 1086 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
+ + + K T +IIAHRL+TI + D+IL+LD G+++E T +ELL+ +G
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 249 bits (636), Expect = 5e-67
Identities = 145/503 (28%), Positives = 260/503 (51%), Gaps = 39/503 (7%)
Query: 38 VGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFR 97
+G ++R L + +++K+L+++ ++G++ +L++ + + + H +W AP +
Sbjct: 149 LGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQ 208
Query: 98 IIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILA 157
+I+ + L++ L V G L+ + Q + +M + + +R+ + +EI+
Sbjct: 209 VILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIE 268
Query: 158 AMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTL 217
+ +VK Y WE + + ++N+R DEL RK +L S V +S + L
Sbjct: 269 NIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYAL 328
Query: 218 LGGDLTPARAFTSLSLFAVLRFPLF-MLPNMITQVVNANVSLKRMEEFLLAEE-KILLPN 275
+ G + R FT++S VLR + P I ++ ++ ++++FL EE K L N
Sbjct: 329 IKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYN 387
Query: 276 PPLTSGLPAISIRNGYFSWDS-------KAER------------------------PTLL 304
LT+ + + N SWD K ++ P L
Sbjct: 388 --LTT--TEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLK 443
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 364
NI+ + G L+A+ G TG GK+SL+ ++GEL P S+ G +++ PQ SWI T
Sbjct: 444 NISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP-SEGKIKHSGRISFSPQTSWIMPGT 502
Query: 365 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 424
++DNI+FG +++ RY I L+ D+ L P D T +GE G+ +SGGQ+ R+S+ARA
Sbjct: 503 IKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARA 562
Query: 425 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 484
VY ++D+++ D P + LD +++F+ C+ +S KTR+LVT++L L + D+I+L+HE
Sbjct: 563 VYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHE 622
Query: 485 GMVKEEGTFEDLSNNGELFQKLM 507
G+ GTF +L F L+
Sbjct: 623 GVCYFYGTFSELQAKRPDFSSLL 645
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 236 bits (603), Expect = 1e-66
Identities = 139/519 (26%), Positives = 244/519 (47%), Gaps = 27/519 (5%)
Query: 8 WIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFAS 67
+ + +G VL L Y + R+G ++ + L +F K LR+ S
Sbjct: 53 ELLLLLLLLALLGGVLRAL--QSYLGS--RLGQKIVADLRRDLFEKLLRLPLSFFDKAKS 108
Query: 68 GKITNLMTTDAEQLQQ-VCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPV 126
G + + +T D E + V L ++++ +I SLVLL++ +L+ L+L + V
Sbjct: 109 GDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALV 168
Query: 127 QTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWE----NSFQSKVQNVRNDE 182
+ + + +KL++ + + + E L+ + +K + E F+ + +R
Sbjct: 169 LSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRAN 228
Query: 183 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF 242
L R LA + + V V++ G F +L G LT + L P+
Sbjct: 229 LRASRLEALLAPLMLLLSSL--GTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPIL 286
Query: 243 MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPT 302
L +++ + A+ + +R+ E L E ++ P PL + +I N FS+ K +P
Sbjct: 287 QLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGK--KPV 344
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVI----RGT 350
L +I+ I G VAIVG +G GK++LI +L P S D + R
Sbjct: 345 LKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKR 404
Query: 351 VAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 409
+ V Q +F+ T+R+NI G E+A+ + + + LP G T +GERGV
Sbjct: 405 IGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGV 464
Query: 410 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ 469
N+SGGQ+QR+++ARA+ N + I D+ SALD + D ++ L G+T +++ ++
Sbjct: 465 NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHR 523
Query: 470 LHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 508
L + DRII++ G + E GT E+L G L+ +L +
Sbjct: 524 LSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQ 562
|
Length = 567 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 2e-64
Identities = 85/212 (40%), Positives = 117/212 (55%), Gaps = 41/212 (19%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+F++V Y PVL +S TI P +KV IVG +G+GKS++L L R+ + G IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 1028
IDG D+ L LRK + +PQ P LFSGT+R N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 1029 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1088
S GQRQ ++++RALLR IL+LDEAT+A+D T+ALI + +
Sbjct: 97 -----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139
Query: 1089 REEFKSCTMLIIAHRLNTIIDCDRILLLDSGR 1120
R K T+++IAHRL+TI D DRI++LD GR
Sbjct: 140 RALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 5e-64
Identities = 88/230 (38%), Positives = 142/230 (61%), Gaps = 5/230 (2%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++F++V RY + PPVL +S IP + V +VG +G+GKS+++N + R +++ GRIL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 1025
IDG D+ + L LR+ +G++ Q LF+ TV N+ P + ++ EA A+
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRP--GATREEVEEAARAANAH 118
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1085
+ I G D + E G S GQRQ ++++RALL+ IL+LDEAT+A+D ++ L+Q
Sbjct: 119 EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQ 178
Query: 1086 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
+ K+ T +IAHRL+TI + DRI++L+ G+++E T EELL+ G
Sbjct: 179 AALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGG 228
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 215 bits (551), Expect = 1e-63
Identities = 100/236 (42%), Positives = 152/236 (64%), Gaps = 7/236 (2%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+FE+V Y P P VL +SFTIP KV IVG +G+GKS++L LFR ++ G IL
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 1025
IDG DI + L LR+ +G++PQ VLF+ T+ +N+ P + +D ++ EA + A +
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP--DATDEEVIEAAKAAQIH 117
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1085
D I R G D V E G S G++Q ++++RA+L+ IL+LDEAT+A+D T+ IQ
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1086 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1141
+R+ K T ++IAHRL+TI++ D+I++L GR++E T EELL +G +++M
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL-AKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 213 bits (544), Expect = 6e-59
Identities = 129/472 (27%), Positives = 211/472 (44%), Gaps = 52/472 (11%)
Query: 704 MFMGQVSQL-------LSTFVLIGIVSTMSLWAI--------------MPLLLLFYAAYL 742
+ + + QL L L IV + L AI PL+ LF +
Sbjct: 102 LALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL-V 160
Query: 743 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAD-INGKSMD------K 795
+ K+ ++ R + F + L GL T+RA+ + + I S D
Sbjct: 161 GLAAKDASEKQFSALAR--LSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMS 218
Query: 796 NIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALN 855
+R ++ LE L I L A + + + FA L+L+
Sbjct: 219 VLRIAFLSSAV-------LEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILA---- 267
Query: 856 ITSLLTAVLRLASL---AENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFE 912
+ L S A A +++ +E P P + I E
Sbjct: 268 -PEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPG--SGEKAEVANEPPIEISLE 324
Query: 913 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 972
++ RY P+ P L L+ TI +VG +GAGKS++LN L + +G I ++G
Sbjct: 325 NLSFRY-PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGI 383
Query: 973 DIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF-SEHSDADLWEALERAHLKDAIRRN 1031
D+ RK + + Q+P LF+GT+R N+ + SD ++ AL++A L + + +
Sbjct: 384 DLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKP 443
Query: 1032 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 1091
GLD + E G S GQ Q L+L+RALL + +L+LDE TA +D T+ +I + ++E
Sbjct: 444 -DGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL 502
Query: 1092 FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1143
K T+L+I HRL D DRI++LD+GR++E T EEL +G ++ +++
Sbjct: 503 AKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQG-LYANLLK 553
|
Length = 559 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 8e-57
Identities = 98/220 (44%), Positives = 128/220 (58%), Gaps = 20/220 (9%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL------- 337
+ + NGYFSW S TL NIN+ IP G L IVG G GK+SL+ A+LGE+
Sbjct: 1 VQVTNGYFSWGSGL--ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 338 ---------PPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS 388
P + R +VAY Q W+ NATV +NI FGS F RY+ D S
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACS 118
Query: 389 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 448
LQ D+DLLP GD TEIGERG+N+SGGQ+QR+ +ARA+Y N+++ DDP SALD H+
Sbjct: 119 LQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 449 VFDRCIRGELSG--KTRVLVTNQLHFLSQVDRIILVHEGM 486
+ I L +T VLVT++L +L D II + +G
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 193 bits (494), Expect = 3e-56
Identities = 82/218 (37%), Positives = 129/218 (59%), Gaps = 5/218 (2%)
Query: 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
G I+F +V Y + P L +S TI +KV I+GR G+GKS++L L + + G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 967 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAH 1023
+L+DG DI + DLR+ +G +PQ LF GT+R N+ P D + A E A
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAG 118
Query: 1024 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1083
+ D + ++ GLD Q+ E G S GQRQ ++L+RALL IL+LDE T+A+D+ ++
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 1084 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 1121
+++ +R+ T++II HR + + DRI+++DSGR+
Sbjct: 179 LKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 9e-56
Identities = 100/242 (41%), Positives = 156/242 (64%), Gaps = 13/242 (5%)
Query: 909 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
I+F++V RY RP++P +L GLS TIPP V +VG +G GKS++++ L R + G
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 967 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAH 1023
IL+DG DI L LR +G++ Q PVLF GT+ N+ P + +D ++ EA ++A+
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP--DATDEEVEEAAKKAN 117
Query: 1024 LKDAIRRNSL--GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1081
+ D I SL G D V E G S GQ+Q ++++RALLR KIL+LDEAT+A+D ++
Sbjct: 118 IHDFI--MSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175
Query: 1082 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1141
L+Q+ + K T ++IAHRL+TI + D I +L +G+V+E T +EL++ +G ++K+
Sbjct: 176 KLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKG-VYAKL 234
Query: 1142 VQ 1143
V+
Sbjct: 235 VK 236
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 1e-55
Identities = 137/507 (27%), Positives = 240/507 (47%), Gaps = 38/507 (7%)
Query: 645 SYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 704
+Y L S + + M +L P+ FF P G +++R D + + +
Sbjct: 75 TYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQV---ASAATDA 131
Query: 705 FMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYA 764
F+ V + L+ L ++ S W + ++++ KRL I++ +
Sbjct: 132 FIVLVRETLTVIGLFIVLLYYS-WQLTLIVVVMLPVLSILMRRVS--KRLRRISKEIQNS 188
Query: 765 Q------FGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG 818
E L G ++ + R+ V+ NR LA+++ G
Sbjct: 189 MGQVTTVAEETLQGYRVVKLFGGQAYETR----------RFDAVS-NRNRRLAMKMTSAG 237
Query: 819 GL---MIWLTATFAVVQNGSAENQEAFAS--TMGLLLSYALNITSLLTAVLRLASLA--- 870
+ + L A+ A+ +A A T G ++ + +L+ + L ++
Sbjct: 238 SISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPM 297
Query: 871 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 930
+ L A E + ++ P E R + G ++F +V RY P L +S
Sbjct: 298 QRGLAAAESLFTLLDSPPEKD---TGTRAIE--RARGDVEFRNVTFRYPGRDRPALDSIS 352
Query: 931 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 990
I P + V +VGR+G+GKS+++N + R E + G+IL+DG D+A + L LR+ + ++
Sbjct: 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVS 412
Query: 991 QSPVLFSGTVRFNL--DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 1048
Q VLF+ T+ N+ + A++ AL A+ +D + + LGLD + E G S
Sbjct: 413 QDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSG 472
Query: 1049 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 1108
GQRQ L+++RALL+ + IL+LDEAT+A+D ++ L+Q + + T L+IAHRL+TI
Sbjct: 473 GQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE 532
Query: 1109 DCDRILLLDSGRVLEYDTPEELLSNEG 1135
DRI+++D GR++E T ELL+ G
Sbjct: 533 KADRIVVMDDGRIVERGTHNELLARNG 559
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 202 bits (515), Expect = 5e-55
Identities = 117/476 (24%), Positives = 214/476 (44%), Gaps = 32/476 (6%)
Query: 681 GRIINRFAKDLGDID----RNVAVFVNMFMGQVSQLLSTFVL--IGIVSTMSLWAIMPLL 734
G ++NR D+ +D R +A V V + T L I + L I+ LL
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVAL---VLIAVVTIGLSFFSIPLALLLGLILLLL 171
Query: 735 LLFY--AAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKS 792
LL Y + + R+ + +QF + + G + + + A D +
Sbjct: 172 LLIIPTLFYRAGRKFGAHLA----QGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEAT 227
Query: 793 MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSY 852
++ L ++ GL++ + + A + + LL+ +
Sbjct: 228 EASWLKAQRKQARFTGLSDAILLLIAGLLV-IGLLLWMAAQVGAGALAQPGAALALLVIF 286
Query: 853 ALNITSLLTAVLRLASLA----ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGS 908
A L A LA A + + R+ ++ + P V + + +
Sbjct: 287 AA-----LEAFEPLAPGAFQHLGQVIASARRLN---DILDQKPEVTFPDEQTA--TTGQA 336
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ +V Y + L + T+ +KV I+GR+G+GKS++L L + ++G I
Sbjct: 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDA 1027
++G +IA LR+ + ++ Q LFSGT+R NL + SD +LW AL++ L+
Sbjct: 397 LNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKL 456
Query: 1028 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1087
+ GL+ + E G S G+R+ L+L+RALL + + +LDE T +D T+ +
Sbjct: 457 LESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL 516
Query: 1088 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1143
+ E + T+L++ HRL + DRI++LD+G+++E T ELL+N G + ++ Q
Sbjct: 517 LFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNG-RYKRLYQ 571
|
Length = 573 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 1e-54
Identities = 159/603 (26%), Positives = 283/603 (46%), Gaps = 66/603 (10%)
Query: 562 QEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETL------RVSSSTWLSYWTDQ 615
Q + ET + F++L L + L L E RV L D+
Sbjct: 140 QGQSETADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVID--TLG--GDK 195
Query: 616 SSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFF 675
+F+ + S+ S V L + + R+ + + S+LR + FF
Sbjct: 196 GPPALASAIFFMCLLSIASS--VSAGLRGGSFNYTMARINL-RIREDLFRSLLRQDLGFF 252
Query: 676 HTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS---TMSLWAIMP 732
N G + +R + D + R++++ VN+ + + LL + +S TM +P
Sbjct: 253 DENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLP 312
Query: 733 LLLLFYAAY-LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRA-----------YK 780
L+ L + YQ + E++ +++ ++ A+ EAL+G+ T+R+ +
Sbjct: 313 LVFLAEKVFGKRYQLLSEELQ--EAVAKANQVAE--EALSGMRTVRSFAAEEGEASRFKE 368
Query: 781 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 840
A + +N + Y ++G L+ V+ G Q
Sbjct: 369 ALEETLQLNKRKALAYAGYLWTT-----------SVLGMLIQ-----VLVLYYGG---QL 409
Query: 841 AFASTM--GLLLSYALNITSLLTAVLRLASLAENSLNAV---ERVGNYIELPSEAPLVIE 895
+ G L+S+ L L AV L+ + + AV E+V Y++ PL
Sbjct: 410 VLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT 469
Query: 896 SNRPPPGWPSSGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 953
P G I+F+DV Y RP++P VL GL+FT+ P + V +VG +G+GKS++
Sbjct: 470 -LAPLN---LEGLIEFQDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVA 524
Query: 954 NTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSD 1012
L + + G++L+DG + ++ L + + ++ Q PVLFSG+VR N+ ++ D
Sbjct: 525 ALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPD 584
Query: 1013 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 1072
++ A + A+ D I G D +V E G S GQ+Q ++++RAL+R+ ++L+LDEA
Sbjct: 585 EEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEA 644
Query: 1073 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1132
T+A+D + L+Q++ S T+L+IAHRL+T+ D+IL+L G V+E T ++L+
Sbjct: 645 TSALDAECEQLLQES--RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLME 702
Query: 1133 NEG 1135
++G
Sbjct: 703 DQG 705
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 203 bits (517), Expect = 2e-54
Identities = 139/499 (27%), Positives = 250/499 (50%), Gaps = 44/499 (8%)
Query: 663 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIV 722
+ +L P+ +F + +G + R ++L I RN + V LL V + ++
Sbjct: 218 LYRHLLGLPLGYFESRRVGDTVAR-VRELEQI-RNF--LTGSALTVVLDLLFVVVFLAVM 273
Query: 723 ---STMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQ--FGEALNGLSTIR 777
S ++ L+ + ++ R KR++ A E++ G+ TI+
Sbjct: 274 FFYSPTLTGVVIGSLVCYALLSVFVGPILR--KRVEDKFERSAAATSFLVESVTGIETIK 331
Query: 778 AYKAYDRMADINGKSMDKNIR--YTLVNMGANRWLAIRL--EIVGGLMIWLTATFAVVQN 833
A + + + + + + + N+G AI L ++ +++W A +V
Sbjct: 332 ATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAH--LVIG 389
Query: 834 GSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAEN---SLNAVERVGNYIELPSE- 889
G+ + G L+++ + + VLRLA L ++ + A+ER+G+ + P+E
Sbjct: 390 GAL--------SPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP 441
Query: 890 --APLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 947
A L G+I FE++ RY P+ P VL L+ I P + +GIVG +G+
Sbjct: 442 RSAGLAALPEL-------RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGS 494
Query: 948 GKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL--- 1004
GKS++ L R+ + G++L+DG D+A LR+ +G++ Q VLFS ++R N+
Sbjct: 495 GKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALC 554
Query: 1005 DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064
+P + A + A D I G + +V E G N S GQRQ ++++RAL+
Sbjct: 555 NP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612
Query: 1065 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1124
+IL+ DEAT+A+D ++ALI + +RE + T++IIAHRL+T+ CDRI++L+ G++ E
Sbjct: 613 RILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAES 672
Query: 1125 DTPEELLSNEGSSFSKMVQ 1143
EELL+ ++++ Q
Sbjct: 673 GRHEELLA-LQGLYARLWQ 690
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 198 bits (507), Expect = 4e-53
Identities = 109/377 (28%), Positives = 191/377 (50%), Gaps = 29/377 (7%)
Query: 768 EALNGLSTIRAYKAYDRMA----DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW 823
E+L+GL TI+A A R ++ ++ A + ++V ++
Sbjct: 329 ESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIV- 387
Query: 824 LTATFAVVQNGSAENQEAFASTMG------LLLSYALNITSLLTAVLRLASLAENSLNAV 877
+ + + ++ + TMG +L AL L +L A+ +L ++
Sbjct: 388 VVGVYLI-----SDGE----LTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSL 438
Query: 878 ERVGNYIELPSEAPLVIESNRPPPGWPS-SGSIKFEDVVLRYRPELPPVLHGLSFTIPPS 936
+ ++LP E P P G I+F +V Y + P L +S TI P
Sbjct: 439 DE---LMQLPVERP----EGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPG 491
Query: 937 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 996
+KV I+GR G+GKS++L L + + G +L+DG DI + DLR+ +G +PQ P LF
Sbjct: 492 EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLF 551
Query: 997 SGTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1055
GT+R N+ + + D ++ A E A + + +RR+ GLD Q+ E G + S GQRQ ++
Sbjct: 552 YGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVA 611
Query: 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILL 1115
L+RALLR IL+LDE T+A+D R++ + ++ T++++ HR + + DRI++
Sbjct: 612 LARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIV 671
Query: 1116 LDSGRVLEYDTPEELLS 1132
+D+GR++ +++L
Sbjct: 672 MDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 8e-53
Identities = 102/245 (41%), Positives = 148/245 (60%), Gaps = 3/245 (1%)
Query: 893 VIESNRPPPGWP-SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS 951
V ++ PP WP G++ F +V Y P P+L+G+SFTIP V IVG +GAGKS+
Sbjct: 246 VSDAPDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKST 304
Query: 952 MLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH- 1010
+L LFR ++ G I IDG DI LR+ +GI+PQ VLF+ T+ +N+
Sbjct: 305 ILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDA 364
Query: 1011 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 1070
+ ++ A E A + D I+ G D V E G S G++Q ++++R +L+ IL+LD
Sbjct: 365 TAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILD 424
Query: 1071 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1130
EAT+A+D T+ IQ +RE T L+IAHRL+TIID D I++LD+GR++E T EEL
Sbjct: 425 EATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEEL 484
Query: 1131 LSNEG 1135
L+ G
Sbjct: 485 LAAGG 489
|
Length = 497 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 4e-52
Identities = 143/481 (29%), Positives = 237/481 (49%), Gaps = 41/481 (8%)
Query: 674 FFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS---TMSLWAI 730
FF N G +++R D + + ++M + + +++ I S T +
Sbjct: 108 FFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167
Query: 731 MPLLLLFYAAYLYYQSTAREVKRL-----DSITRSPVYAQFGEALNGLSTIRAYKAYDRM 785
+PL+LL + R V++L D I + YA GE L + T++A+ D
Sbjct: 168 VPLVLLPILLF------GRRVRKLSRESQDRIADAGSYA--GETLGAIRTVQAFGHEDAE 219
Query: 786 ADINGKSMDKNIRYTLVNMGANRWL-AIRLEIVGG---LMIWLTATFAVVQNGSAENQEA 841
G +++K + L AI + +V G ++W+ A V G
Sbjct: 220 RSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAH--DVIAGKMS---- 273
Query: 842 FASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP-- 899
A T+G + YA+ + + + + + + A ER+ IEL P + P
Sbjct: 274 -AGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERL---IELLQAEPDIKAPAHPKT 329
Query: 900 PPGWPSSGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 957
P P G I+FE V Y RP+ P L GL+ T+ P + V +VG +GAGKS++ L
Sbjct: 330 LPV-PLRGEIEFEQVNFAYPARPDQP-ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLL 387
Query: 958 RIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDAD 1014
R + + GRIL+DG D+ + +LR + ++PQ PVLF+ +V N+ P + +D +
Sbjct: 388 RFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP--DATDEE 445
Query: 1015 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1074
+ A AH + I G D + E G S GQRQ ++++RA+L+ + IL+LDEAT+
Sbjct: 446 VEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATS 505
Query: 1075 AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1134
A+D ++ L+Q+ + K T LIIAHRL T++ DRI+++D GR++ T EL++
Sbjct: 506 ALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKG 565
Query: 1135 G 1135
G
Sbjct: 566 G 566
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 184 bits (468), Expect = 5e-52
Identities = 83/234 (35%), Positives = 138/234 (58%), Gaps = 5/234 (2%)
Query: 289 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR 348
N +FS P L NINL I G ++AI G TG GKTSL+ +LGEL P + I+
Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP---SEGKIK 95
Query: 349 --GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 406
G +++ Q SWI T+++NI+FG +++ RY+ + L+ D+ P D T +GE
Sbjct: 96 HSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGE 155
Query: 407 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLV 466
G+ +SGGQ+ R+S+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LV
Sbjct: 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILV 215
Query: 467 TNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEK 520
T+++ L + D+I+++HEG GTF +L + F + +++ E+
Sbjct: 216 TSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFSAER 269
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 8e-52
Identities = 88/239 (36%), Positives = 146/239 (61%), Gaps = 2/239 (0%)
Query: 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
G + +D+ +Y VL +SF+I P +VG++GRTG+GKS++L+ R++ E G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GD 59
Query: 967 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 1026
I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ E LK
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1027 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1086
I + LD + + G S G +QL+ L+R++L ++KIL+LDE +A +D T +I+K
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1087 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1145
T+++ F CT+++ HR+ +++C R L+++ +V +YD+ ++LL NE S F + + +
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-NEKSHFKQAISPS 237
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 1e-51
Identities = 85/230 (36%), Positives = 136/230 (59%), Gaps = 5/230 (2%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I FE V RY+P+ P +L +S I P + VGIVGR+G+GKS++ + R E GR+L
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA- 1027
+DG D+A LR+ +G++ Q VLF+ ++R N+ + +E A L A
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIA--LADPGMSMERVIEAAKLAGAH 118
Query: 1028 --IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1085
I G D V E G S GQRQ ++++RAL+ +IL+ DEAT+A+D ++ I
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1086 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
+ + + T++IIAHRL+T+ + DRI++++ GR++E + +ELL+ G
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENG 228
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 2e-51
Identities = 98/257 (38%), Positives = 146/257 (56%), Gaps = 7/257 (2%)
Query: 898 RPPPGWPS----SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 953
R PPG G+++F+DV Y + +SF P V IVG TGAGKS+++
Sbjct: 320 RDPPGAIDLGRVKGAVEFDDVSFSY-DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLI 378
Query: 954 NTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SD 1012
N L R+ + + GRILIDG DI LR+ + ++ Q LF+ ++ N+ +D
Sbjct: 379 NLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATD 438
Query: 1013 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 1072
++ A ERA D I R G D V E G S G+RQ L+++RALL+ IL+LDEA
Sbjct: 439 EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEA 498
Query: 1073 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1132
T+A+DV T+A ++ + E K T IIAHRL+T+ + DRIL+ D+GRV+E + +E L
Sbjct: 499 TSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE-LV 557
Query: 1133 NEGSSFSKMVQSTGAAN 1149
G F+ ++++ G
Sbjct: 558 ARGGRFAALLRAQGMLQ 574
|
Length = 588 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 3e-50
Identities = 131/520 (25%), Positives = 245/520 (47%), Gaps = 35/520 (6%)
Query: 17 IFVGVVLGVLCEA------QYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKI 70
+ +G++L L EA Y + G RL L FR LR+ + + G+I
Sbjct: 196 LAIGLLLAALFEALLRLLRTYLIAHL--GKRLDLELSGRFFRHLLRLPLSYFEKRSVGEI 253
Query: 71 TNLMTTDAEQLQQVC--QALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQT 128
+ + + EQ+++ L + F +I V+ + ++ A + + + T
Sbjct: 254 ISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLI--T 310
Query: 129 FIISR-MQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFR 187
I +++ T++ ++ + ++ + E + ++ VK A E F+S+ N +++
Sbjct: 311 LIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGF 370
Query: 188 KAQFLAACNSFILNSIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLP 245
K + LA + I + + L V ++ FG +L G+LT + L P+ L
Sbjct: 371 KTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLS 430
Query: 246 NMITQVVNANVSLKRMEEFLLA--EEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTL 303
+ T A V+L+R+ + L E++ L I N F + + P L
Sbjct: 431 QLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYG-PDDPPVL 489
Query: 304 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDAS-AVIRGTV 351
+++L+IP G VAIVG +G GK++L+ +LG P ++D A +R V
Sbjct: 490 EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549
Query: 352 AYVPQVSWIFNATVRDNILFGSAF--EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 409
YV Q ++F+ ++R+NI G+ + E A + ++ LP G T +GE G
Sbjct: 550 GYVLQDPFLFSGSIRENIALGNPEATDEEIIE-AAQLAGAHEFIENLPMGYDTPVGEGGA 608
Query: 410 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ 469
N+SGGQ+QR+++ARA+ S + + D+ SALD + + L G+T +++ ++
Sbjct: 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAHR 667
Query: 470 LHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 509
L + DRII++ +G + E+G+ E+L G L+ +L +
Sbjct: 668 LSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQ 707
|
Length = 709 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 1e-49
Identities = 146/545 (26%), Positives = 249/545 (45%), Gaps = 97/545 (17%)
Query: 634 SFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGD 693
+ G LA S ++ L A+ +LR P+ FF G + +R
Sbjct: 186 AVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRA------ 239
Query: 694 IDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFY--------------- 738
M + Q+ ++LS L ++S ++A++ L L+FY
Sbjct: 240 ----------MGISQIRRILSGSTLTTLLS--GIFALLNLGLMFYYSWKLALVAVALALV 287
Query: 739 -------AAY--LYYQSTAREVK-RLDSITRSPVYAQFGEALNGLSTIRAYKAYDR-MAD 787
+ + E+ ++ +T + +NG+S +R A +R A
Sbjct: 288 AIAVTLVLGLLQVRKERRLLELSGKISGLT--------VQLINGISKLRVAGAENRAFAR 339
Query: 788 INGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMG 847
R L + + + L+ A V+ + + FA+ +
Sbjct: 340 WAK------------LFSRQRKLELSAQRIENLLTVFNAVLPVLTSAAL-----FAAAIS 382
Query: 848 LLLSYALNI----------TSLLTAVLRLASLAENSLNAV---ERVGNYIELPSEAPLVI 894
LL L++ S AV +L++ + L + ER +E E +
Sbjct: 383 LLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPE----V 438
Query: 895 ESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN 954
+ + PG SG+I+ + V RYRP+ P +L +S I P + V IVG +G+GKS
Sbjct: 439 DEAKTDPG-KLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKS---- 493
Query: 955 TLFRIV----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH 1010
TL R++ E G + DG D+A + +R+ LG++ Q+ L SG++ N+ +
Sbjct: 494 TLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPL 553
Query: 1011 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 1070
+ + WEA A L + IR +G+ +SE G S GQRQ L ++RAL+R+ +IL+ D
Sbjct: 554 TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD 613
Query: 1071 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1130
EAT+A+D RT A++ +++ E T ++IAHRL+TI + DRI +LD+GRV++ T +EL
Sbjct: 614 EATSALDNRTQAIVSESL--ERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDEL 671
Query: 1131 LSNEG 1135
++ EG
Sbjct: 672 MAREG 676
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 2e-49
Identities = 145/499 (29%), Positives = 229/499 (45%), Gaps = 54/499 (10%)
Query: 663 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQ-VSQLLSTFVLIGI 721
L ILR P+ FF G I +R ++ VA F++ GQ + L +L+
Sbjct: 233 FLWHILRLPVRFFAQRHAGDIASRV-----QLNDQVAEFLS---GQLATTALDAVMLVFY 284
Query: 722 VSTMSLW-AIMPLLLLFYAA----YLYYQSTARE--VKRLDSITRSPVYAQFGEALNGLS 774
M L+ ++ L+ + +AA L S R +RL + G A++GL
Sbjct: 285 ALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQ-DAGKLT---GVAISGLQ 340
Query: 775 TIRAYKAYDRMADINGKSMDKNIRYTLVNMG-----ANRWLAIRLEIVGGL--MIWLTAT 827
+I KA +D + + L+N + L + ++ L + L
Sbjct: 341 SIETLKASGLESDFFSRW--AGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVG 398
Query: 828 FAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLA------ENSLNAVERVG 881
V G T+G+L+++ ++S L V L E LN ++ V
Sbjct: 399 GLRVMEGQL--------TIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVL 450
Query: 882 NYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGI 941
P + P SG ++ ++ Y P PP++ S T+ P +V +
Sbjct: 451 RNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVAL 510
Query: 942 VGRTGAGKSSMLNTLFRIV----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 997
VG +G+GKS T+ ++V + G IL DG + L + ++ Q LF
Sbjct: 511 VGGSGSGKS----TIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFE 566
Query: 998 GTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 1056
GTVR NL + DADL A + A + D I G DA+++E G N S GQRQ L +
Sbjct: 567 GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEI 626
Query: 1057 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 1116
+RAL+R IL+LDEAT+A+D T+ +I +R + CT +I+AHRL+TI DCD I++L
Sbjct: 627 ARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVL 684
Query: 1117 DSGRVLEYDTPEELLSNEG 1135
+ G+V++ T EEL + G
Sbjct: 685 ERGKVVQRGTHEELWAVGG 703
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 2e-49
Identities = 140/570 (24%), Positives = 262/570 (45%), Gaps = 47/570 (8%)
Query: 587 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFG-------QVL 639
+++ +++ + + ++ S +L Q + T+ P ++S G Q +
Sbjct: 157 LIVNIVIAAIIVTLISIAGSYYL-----QKIIDTYIPHKMMGTLGIISIGLIIAYIIQQI 211
Query: 640 VTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVA 699
++ + L + + + + + + PM FF T G I++RF ID +
Sbjct: 212 LSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALAS 271
Query: 700 VFVNMFMGQVSQLLSTFVLIGIV---STMSLWAIMPLLLLFYAAYLY-----YQSTAREV 751
+++F+ + V++G+ M L+ + L + YA + + +
Sbjct: 272 TILSLFLD-----MWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDA 326
Query: 752 KRLDSITRSPVYAQFGEALNGLSTIRAY----KAYDRMADINGKSMDKNIRYTLVNMGAN 807
+ +++ S + E LNG+ TI++ + Y ++ G ++K+ +Y + G
Sbjct: 327 MQANAVLNSSII----EDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQ 382
Query: 808 RWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLA 867
A+ I+ +++W A + + F + + L+ NI +L L+ A
Sbjct: 383 AIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPK-LQAA 441
Query: 868 SLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLH 927
+A N LN V V SE I + +G I DV Y +L
Sbjct: 442 RVANNRLNEVYLV------DSE---FINKKKRTELNNLNGDIVINDVSYSYGYG-SNILS 491
Query: 928 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987
+S TI + K IVG +G+GKS++ L + G IL++GF + LR+ +
Sbjct: 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551
Query: 988 IIPQSPVLFSGTVRFNLDPFSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1045
+PQ P +FSG++ NL ++ S ++W A E A +KD I LG ++SE G +
Sbjct: 552 YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSS 611
Query: 1046 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1105
S GQ+Q ++L+RALL SK+L+LDE+T+ +D T+ I + + T++ +AHRL+
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL-NLQDKTIIFVAHRLS 670
Query: 1106 TIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
D+I++LD G+++E + +ELL G
Sbjct: 671 VAKQSDKIIVLDHGKIIEQGSHDELLDRNG 700
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 1e-48
Identities = 159/564 (28%), Positives = 271/564 (48%), Gaps = 68/564 (12%)
Query: 603 VSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANS---YWLIISSLYAA--- 656
VS +SY+ D K + PL + + L+ V + L + Y + AA
Sbjct: 40 VSGPLLISYFIDNMVAKGNLPL---GLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGV 96
Query: 657 -KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLST 715
++L ++ + LR P+ F T P+G++I+R D V ++++ V+ +L +
Sbjct: 97 VQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTND-------TEVIRDLYVTVVATVLRS 149
Query: 716 FVLIG--IVSTMSL-W-------AIMPLLLLFYAAYLYYQST--AREVKR-LDSITRSPV 762
LIG +V+ SL W I P +L+ Y Y ST R V+ L I
Sbjct: 150 AALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRY-STPIVRRVRAYLADINDG-- 206
Query: 763 YAQFGEALNGLSTIRAYKAYDRMADINGKSM-DKNIRYTLVNMGANRW----------LA 811
F E +NG+S I+ ++ R G+ M + + + + M R L
Sbjct: 207 ---FNEVINGMSVIQQFRQQARF----GERMGEASRSHYMARMQTLRLDGFLLRPLLSLF 259
Query: 812 IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 871
L + G LM++ + ++ G AF S +G L + +T+ S+ +
Sbjct: 260 SALILCGLLMLFGFSASGTIEVGVLY---AFISYLGRLNEPLIELTTQ-------QSMLQ 309
Query: 872 NSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSF 931
++ A ERV ++ P + +RP SG I ++V YR + VL ++
Sbjct: 310 QAVVAGERVFELMDGPRQQ--YGNDDRPL----QSGRIDIDNVSFAYRDD-NLVLQNINL 362
Query: 932 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 991
++P V +VG TG+GKS++ + L L G I +DG ++ LR+ + ++ Q
Sbjct: 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQ 422
Query: 992 SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1051
PV+ + T N+ + S+ +W+ALE L + R GL + E G N SVGQ+
Sbjct: 423 DPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK 482
Query: 1052 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD 1111
QLL+L+R L++ +IL+LDEATA +D T+ IQ+ + + T+++IAHRL+TI++ D
Sbjct: 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEAD 542
Query: 1112 RILLLDSGRVLEYDTPEELLSNEG 1135
IL+L G+ +E T ++LL+ +G
Sbjct: 543 TILVLHRGQAVEQGTHQQLLAAQG 566
|
Length = 592 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 7e-47
Identities = 126/538 (23%), Positives = 217/538 (40%), Gaps = 62/538 (11%)
Query: 7 AWIGYIYAFSI--FVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKN 64
+ + + I + L L E ++ +V LR ++ + +
Sbjct: 38 SLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPA----FIAQ 93
Query: 65 FASGKITNLMTTDAEQLQQ-----VCQALHTLWSAPFRIIISLVLLYNELGVASLLGALL 119
+G L EQL+ + Q + P I+I+ + +N LL
Sbjct: 94 KPAGSAATLALEGIEQLEPYYARYLPQMFLSAI-VPLLILIA-IFFFNWAAALILLITAP 151
Query: 120 LVFMFPVQTFIISR------MQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQS 173
L+ +F + + ++ L + D+ GL E L A + E +
Sbjct: 152 LIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGL--ETLRAFGRTEAT--EERIRK 207
Query: 174 KVQNVRNDELSWFRKA-------QFLAACNSFILN---SIPVLVTVVSFGMFTLLG-GDL 222
++ FRKA FL +S +L + + + V G F LLG GDL
Sbjct: 208 DSED--------FRKATMSVLRIAFL---SSAVLEFFAYLSIALVAVYIG-FRLLGEGDL 255
Query: 223 TPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN-PPLTSG 281
T L L PL L + + ++ L + +
Sbjct: 256 TLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVAN 315
Query: 282 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-- 339
P I I S+ +P L ++NL I G L A+VG +G GK++L++ +LG L P
Sbjct: 316 EPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ 375
Query: 340 ----VSDAS------AVIRGTVAYVPQVSWIFNATVRDNILFG-SAFEPARYEKAIDVTS 388
V+ R +++V Q ++F T+R+NIL A+D
Sbjct: 376 GEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAG 435
Query: 389 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 448
L + G D T IGE G +SGGQ QR+++ARA+ S + + + D+P + LDA +
Sbjct: 436 LLEFVPKPDGLD-TVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI 494
Query: 449 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 506
+ + ++ KT +++T++L + DRI+++ G + E+GT E+LS L+ L
Sbjct: 495 I-LQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANL 551
|
Length = 559 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 1e-46
Identities = 84/231 (36%), Positives = 130/231 (56%), Gaps = 6/231 (2%)
Query: 889 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 948
+A + + P + S++F V + Y P P L +SFT+PP ++V +VG +GAG
Sbjct: 302 DAAPRPLAGKAPVTAAPAPSLEFSGVSVAY-PGRRPALRPVSFTVPPGERVALVGPSGAG 360
Query: 949 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---D 1005
KS++LN L V+ G I ++G +A R + +PQ P LF+GT+ N+
Sbjct: 361 KSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLAR 420
Query: 1006 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1065
P + SDA++ EALERA L + + GLD + E G S GQ Q L+L+RA LR +
Sbjct: 421 P--DASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAP 478
Query: 1066 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 1116
+L+LDE TA +D T+A + + +R + T+L++ HRL DRI++L
Sbjct: 479 LLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 1e-45
Identities = 89/231 (38%), Positives = 136/231 (58%), Gaps = 2/231 (0%)
Query: 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
G I+F +V Y + P L ++F IP V +VGR+G+GKS++ N L R +++ G
Sbjct: 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399
Query: 967 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE--HSDADLWEALERAHL 1024
IL+DG D+ + L LR + ++ Q+ LF+ T+ N+ +S + EA A+
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYA 459
Query: 1025 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1084
D I + GLD + E G S GQRQ ++++RALLR S IL+LDEAT+A+D ++ I
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 1085 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
Q + E K+ T L+IAHRL+TI D IL+++ G ++E T ELL+ G
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNG 570
|
Length = 582 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 4e-44
Identities = 125/518 (24%), Positives = 217/518 (41%), Gaps = 63/518 (12%)
Query: 4 DGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNV------MRVGFRLRSTLVAAVFRKSLRI 57
G + A V+L + Q V +LR L+ AV R
Sbjct: 36 AGEPLAELLPALGALALVLLLRALLG-WLQERAAARAAAAVKSQLRERLLEAVAALGPRW 94
Query: 58 THEARKNFASGKITNLMTTDAEQLQQ-VCQALHTLWSAPFRIIISLVLLYNELGVASLLG 116
SG++ L E L + L L A +I+ L +L + +
Sbjct: 95 LQGRP----SGELATLALEGVEALDGYFARYLPQLVLA---VIVPLAILA-AVFPQDWIS 146
Query: 117 ALLLVFMFP-VQTFII---SRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQ 172
L+L+ P + F+I Q ++ + G + L + +K + +
Sbjct: 147 GLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQA 206
Query: 173 SKV----QNVRNDELSWFRKAQFLAACNSFILN---SIPVLVTVVSFGMFTLLGGDLTPA 225
+ + + R + R A FL+ S +L ++ V + V G F LL GDL A
Sbjct: 207 AAIRRSSEEYRERTMRVLRIA-FLS---SAVLELFATLSVALVAVYIG-FRLLAGDLDLA 261
Query: 226 RAFTSLSLFAVLRFPLFMLPNMITQV-------VNANVSLKRMEEFLLAEEKILLPNPPL 278
F +L P F LP + Q+ + + + + L A + L P+
Sbjct: 262 TGL-----FVLLLAPEFYLP--LRQLGAQYHARADGVAAAEALFAVLDAAPRPLAGKAPV 314
Query: 279 TSG-LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 337
T+ P++ ++ + RP L ++ +P G VA+VG +G GK++L++ +LG +
Sbjct: 315 TAAPAPSLEFSGVSVAYPGR--RPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372
Query: 338 PPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFG-SAFEPARYEKAI 384
P + AV R +A+VPQ ++F T+ +NI A +A+
Sbjct: 373 DPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREAL 432
Query: 385 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 444
+ L + LP G T IGE G +SGGQ QR+++ARA ++ + + D+P + LDA
Sbjct: 433 ERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAE 492
Query: 445 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 482
+V + +R G+T +LVT++L + DRI+++
Sbjct: 493 TEAEVLEA-LRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 1e-43
Identities = 75/218 (34%), Positives = 134/218 (61%), Gaps = 4/218 (1%)
Query: 907 GSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
G +KF++V Y RP+ VL +SFT+ P + +VG +G+GKS+++ L + +
Sbjct: 10 GIVKFQNVTFAYPTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 965 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSDADLWEALERAH 1023
G++L+DG I+++ L + ++ Q PVLF+ +++ N+ S + EA ++AH
Sbjct: 69 GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAH 128
Query: 1024 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1083
I + G D +V E G S GQ+Q ++++RAL+R ++L+LDEAT+A+D ++
Sbjct: 129 AHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1084 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 1121
+Q+ + + + T+L+IAHRL+T+ D+IL+LD GR+
Sbjct: 189 VQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 4e-43
Identities = 131/507 (25%), Positives = 228/507 (44%), Gaps = 60/507 (11%)
Query: 18 FVGVVLGVLCEAQYFQNVMRVGFRLRSTLV------------AAVFRKSLRITHEARKNF 65
+GV L ++ + V++ LRS + A +F + L + EAR
Sbjct: 190 AIGVALAIVFDF-----VLKT---LRSYFLDVAGKKADLILSAKLFERVLGLRMEARPAS 241
Query: 66 ASGKITNLMTTDAEQLQQV-----CQALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 120
L + + V L L PF ++ L+++ G + + +
Sbjct: 242 VGSFANQL-----REFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGGPLVWVPLVAI 295
Query: 121 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180
+ + + +L +E ++ + +R ++ E L+ ++ +K E FQ + +
Sbjct: 296 PLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVA 355
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTV--VSFGMFTLLGGDLTPAR--AFTSLSLFAV 236
K++FL+ + I LV+V V G++ + G+LT A LS A+
Sbjct: 356 ALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRAL 415
Query: 237 LRFPLFMLPNMITQVVNANVSLKRMEEFLLAE-----EKILLPNPPLTSGLPAISIRNGY 291
PL L ++T+ A +L+ ++E + L P L G I RN
Sbjct: 416 A--PLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRL-QG--EIEFRNVS 470
Query: 292 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA-------- 343
F++ E P L N++L I G VAI+G G GK++L+ +LG P +
Sbjct: 471 FAY-PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDI 529
Query: 344 ----SAVIRGTVAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPG 398
A +R + YVPQ +F T+RDNI G+ + + +A ++ + + P
Sbjct: 530 RQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPD 589
Query: 399 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 458
G +IGERG ++SGGQ+Q V++ARA+ + + + D+P SA+D + DR ++ L
Sbjct: 590 GLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR-LKRWL 648
Query: 459 SGKTRVLVTNQLHFLSQVDRIILVHEG 485
+GKT VLVT++ L VDRII++ G
Sbjct: 649 AGKTLVLVTHRTSLLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 2e-41
Identities = 88/242 (36%), Positives = 140/242 (57%), Gaps = 3/242 (1%)
Query: 906 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 965
G+++F + + + +SF V IVG TGAGK++++N L R+ + G
Sbjct: 332 KGAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG 390
Query: 966 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHL 1024
+ILIDG DI LRK + + Q LF+ ++R N+ E +D +++EA + A
Sbjct: 391 QILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAA 450
Query: 1025 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1084
D I + S G D V E G S G+RQ L+++RA+L+ + ILVLDEAT+A+DV T+A +
Sbjct: 451 HDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARV 510
Query: 1085 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1144
+ I K+ T IIAHRL+T+ + D +L LD GR++E + +E L + F K+++
Sbjct: 511 KNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQE-LIQKDGRFYKLLRR 569
Query: 1145 TG 1146
+G
Sbjct: 570 SG 571
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 1e-40
Identities = 87/269 (32%), Positives = 143/269 (53%), Gaps = 10/269 (3%)
Query: 874 LNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTI 933
+ + R+ E E S S+ +V Y + PVL GLS I
Sbjct: 308 IASARRINEITEQKPEVTFPTTSTAAAD----QVSLTLNNVSFTYPDQPQPVLKGLSLQI 363
Query: 934 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP 993
+KV ++GRTG GKS++L L R + ++G IL++G IA + LR+ + ++ Q
Sbjct: 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRV 423
Query: 994 VLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1050
LFS T+R NL P SD L E L++ L + + + GL+A + E G S G+
Sbjct: 424 HLFSATLRDNLLLAAP--NASDEALIEVLQQVGL-EKLLEDDKGLNAWLGEGGRQLSGGE 480
Query: 1051 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1110
++ L ++RALL + +L+LDE T +D T+ I + + E ++ T+L+I HRL +
Sbjct: 481 QRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQF 540
Query: 1111 DRILLLDSGRVLEYDTPEELLSNEGSSFS 1139
DRI ++D+G+++E T +ELL+ +G +
Sbjct: 541 DRICVMDNGQIIEQGTHQELLAQQGRYYQ 569
|
Length = 574 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 2e-40
Identities = 76/268 (28%), Positives = 130/268 (48%), Gaps = 24/268 (8%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+ ++ +Y + L G+SF + P + G++G GAGK+++L L +++ G IL
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLD-------PFSEHSDADLWEALE 1020
+ G+D+ K +R+ +G +PQ P L+ TVR NL+ E ++ + E LE
Sbjct: 64 VLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122
Query: 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1080
L+D + S G +Q LS++ ALL ++L+LDE T+ +D +
Sbjct: 123 LFGLEDKANK-----------KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 1081 DALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 1137
I + +RE K T+L+ H L + CDR+++L+ G+++ TPEEL G
Sbjct: 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGK 231
Query: 1138 FSKMVQSTGAANAQYLRSLVLGGEAENK 1165
++ A+ L L L E
Sbjct: 232 GVIELEPERLELAELLEGLKLVKGEEEL 259
|
Length = 293 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 3e-40
Identities = 116/495 (23%), Positives = 214/495 (43%), Gaps = 36/495 (7%)
Query: 40 FRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRII 99
FR+ S L +F K ++ + SG + N + D + L + + +I
Sbjct: 87 FRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLI 146
Query: 100 ISLVLLYNELGVASLLGALLLVFMFPVQTFIISRM--QKLTKEGLQRTDKRIGLMN---E 154
+ + L S+ ALLL + + II + + K G R L + +
Sbjct: 147 AVVTIG---LSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTD 203
Query: 155 ILAAMDAVKCYAWENSFQSKVQNVRNDELSWF---RKAQFLAACNSFILNSIPVLVTVVS 211
+ + + E++++ + E SW RK + IL I L+ +
Sbjct: 204 WVQGQAELLIFGAEDAYR---TALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGL 260
Query: 212 FGMFTLL---GGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAE 268
G P A L +FA L + P + S +R+ + L +
Sbjct: 261 LLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQK 320
Query: 269 EKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS 328
++ P+ + A+ +RN F++ + + L N NL + G VAI+G +G GK++
Sbjct: 321 PEVTFPDEQTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKST 379
Query: 329 LISAMLGELPPVSDA------------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFE 376
L+ + G P + +R T++ + Q +F+ T+RDN+ +
Sbjct: 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLAN--P 437
Query: 377 PARYEKAIDV---TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 433
A E+ L+ L+ P G T +GE G +SGG+++R+++ARA+ ++ +++
Sbjct: 438 DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWL 497
Query: 434 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 493
D+P LD RQV + GKT ++VT++L L ++DRII++ G + EEGT
Sbjct: 498 LDEPTEGLDPITERQVLAL-LFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTH 556
Query: 494 EDLSNNGELFQKLME 508
+L N +++L +
Sbjct: 557 AELLANNGRYKRLYQ 571
|
Length = 573 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 3e-40
Identities = 69/216 (31%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988
L+FT+P ++ +VG +GAGK+S+LN L + +G + I+G ++ + RK L
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY-QGSLKINGIELRELDPESWRKHLSW 427
Query: 989 IPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1045
+ Q+P L GT+R N+ +P + SD L +ALE A + + + GLD + +
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485
Query: 1046 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1105
SVGQ Q L+L+RALL+ ++L+LDE TA++D ++ L+ + + + T L++ H+L
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE 545
Query: 1106 TIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1141
+ D+I ++ G++++ E LS G F+ +
Sbjct: 546 DLAQWDQIWVMQDGQIVQQGDYAE-LSQAGGLFATL 580
|
Length = 588 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 1e-39
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 55/213 (25%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 341
I +N FS+ + +P L +++L I G VAIVG +G GK++L+ +L P S
Sbjct: 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 342 ---------DASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 392
+R +AYVPQ ++F+ T+R+NIL
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL---------------------- 97
Query: 393 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 452
SGGQ+QR+++ARA+ + + I D+ SALD + +
Sbjct: 98 -------------------SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138
Query: 453 CIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 485
+R GKT +++ ++L + DRII++ +G
Sbjct: 139 -LRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 1e-39
Identities = 81/240 (33%), Positives = 126/240 (52%), Gaps = 26/240 (10%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 344
I N F++D RP L +++ IP G VAIVG +G GK S I +L VS S
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGK-STILRLLFRFYDVSSGS 57
Query: 345 AVI-------------RGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYE--KAIDVT 387
+I R + VPQ + +FN T+ NI +G A + E KA +
Sbjct: 58 ILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQI- 116
Query: 388 SLQHDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 446
HD + P G T +GERG+ +SGG+KQRV++ARA+ N + + D+ SALD H
Sbjct: 117 ---HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTE 173
Query: 447 RQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 506
R++ +R G+T +++ ++L + D+II++ +G + E GT E+L G L+ ++
Sbjct: 174 REIQ-AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 1e-39
Identities = 103/416 (24%), Positives = 180/416 (43%), Gaps = 33/416 (7%)
Query: 699 AVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSIT 758
V + ++ L LI + + PL+ + ++ + + RL
Sbjct: 138 LVVGAAAVAAIAVLSVPAALILAAGLLLAGFVAPLV-----SLRAARAAEQALARL---- 188
Query: 759 RSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI-- 816
R + AQ +AL+G + + A + + + + T A A+ +
Sbjct: 189 RGELAAQLTDALDGAAELVAS---GALPAALAQVEEADRELTRAERRAAAATALGAALTL 245
Query: 817 -VGGLMIWLTATFAVVQNGSAENQEA---FASTMGLLLSYALNITSLLT-AVLRLASLAE 871
GL + A+ + A A + L L+ A + L A +L +
Sbjct: 246 LAAGLAVLGALWAGG--PAVADGRLAPVTLAVLVLLPLA-AFEAFAALPAAAQQLTRVRA 302
Query: 872 NSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSF 931
A ER+ ++ + +++ D+ Y P PPVL G+S
Sbjct: 303 ----AAERIVEVLDAAGPVAEG-SAPAAGAVGLGKPTLELRDLSAGY-PGAPPVLDGVSL 356
Query: 932 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 991
+PP ++V I+G +G+GKS++L TL +++ +G + +DG ++ ++R+ + + Q
Sbjct: 357 DLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQ 416
Query: 992 SPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 1048
LF TVR NL P + +D +LW ALER L D +R GLD + E G S
Sbjct: 417 DAHLFDTTVRENLRLARP--DATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSG 474
Query: 1049 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 1104
G+RQ L+L+RALL + IL+LDE T +D T + + + T+++I H L
Sbjct: 475 GERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 4e-38
Identities = 132/540 (24%), Positives = 244/540 (45%), Gaps = 55/540 (10%)
Query: 3 QDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEAR 62
+D + +AF + V +VL + A+++ V +G R+ + + AVF + ++
Sbjct: 51 KDSSGLLNRYFAFLLVVALVLALGTAARFYL-VTWLGERVVADIRRAVFAHLISLSPSFF 109
Query: 63 KNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVF 122
SG++ + +TTD LQ V + +L S R + + + + S L++
Sbjct: 110 DKNRSGEVVSRLTTDTTLLQSVIGS--SL-SMALRNALMCIGGLIMMFITSPKLTSLVLL 166
Query: 123 MFPVQTFIIS----RMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCY------------A 166
P+ I R++KL++E R E L A+ V+ + A
Sbjct: 167 AVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGA 226
Query: 167 WENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPAR 226
E ++++ Q +R +A A + +I V V+ G ++ G ++
Sbjct: 227 VEKAYEAARQRIR-------TRALLTAIVIVLVFGAI---VGVLWVGAHDVIAGKMSAGT 276
Query: 227 --AFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPA 284
F ++ L + ++ A + +R+ E L AE I P P T +P
Sbjct: 277 LGQFVFYAVMVAGSIG--TLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPL 334
Query: 285 ---ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 341
I F++ ++ ++P L +NL + G VA+VG +G GK++L +L P S
Sbjct: 335 RGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQS 394
Query: 342 DA------------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSL 389
A +R +A VPQ +F A+V +NI +G A E+
Sbjct: 395 GRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP--DATDEEVEAAARA 452
Query: 390 QHD---LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 446
H + LP G T +GERGV +SGGQ+QR+++ARA+ ++ + + D+ SALDA
Sbjct: 453 AHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE-S 511
Query: 447 RQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 506
Q+ + + + G+T +++ ++L + + DRI+++ +G + +GT +L G L+ +L
Sbjct: 512 EQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARL 571
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 5e-38
Identities = 73/215 (33%), Positives = 118/215 (54%), Gaps = 15/215 (6%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 341
I RN FS+ + E P L N++L I G VAI+G G GK++L+ + G P S
Sbjct: 2 RIEFRNVSFSYPN-QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 342 ------DAS----AVIRGTVAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQ 390
D A +R + YVPQ +F T+RDNI G+ + R +A ++ +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120
Query: 391 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 450
++ P G +IGERG +SGGQ+Q V++ARA+ ++ + + D+P SA+D + ++
Sbjct: 121 DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK 180
Query: 451 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 485
+R +R L KT +++T++ L VDRII++ G
Sbjct: 181 ER-LRQLLGDKTLIIITHRPSLLDLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 5e-38
Identities = 66/214 (30%), Positives = 105/214 (49%), Gaps = 42/214 (19%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ E+V RY PPVL +SF+I P + + I+G +G+GKS++ + ++ GR+
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 1028
+DG DI+++ +L +G +PQ LFSG++ N+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 1029 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1088
S GQRQ L L+RAL +ILVLDE + +DV + + + I
Sbjct: 97 -----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
Query: 1089 RE-EFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 1121
+ T ++IAHR T+ DRIL+L+ GRV
Sbjct: 140 AALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 7e-38
Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 20/227 (8%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 339
I N FS+D K +P L +IN I G VAIVG TG GKT+LI+ ++ P
Sbjct: 3 IEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 340 ------VSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 392
+ D S +R + V Q +++F+ T+ +NI G A E+ I+
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGR--PNATDEEVIEAAKEAGA 118
Query: 393 LDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 449
D LP G T +GE G N+S G++Q +++ARA+ + + I D+ S +D ++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET-EKL 177
Query: 450 FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
+ + G+T +++ ++L + D+I+++ +G + EEGT ++L
Sbjct: 178 IQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDEL 224
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 2e-36
Identities = 77/258 (29%), Positives = 137/258 (53%), Gaps = 2/258 (0%)
Query: 10 GYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE--ARKNFAS 67
G ++F+ ++ +C +++ +R G + RS L A +F K I+ + A+ + +
Sbjct: 284 GLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNT 343
Query: 68 GKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQ 127
G+I N+M+TD E++ Q LWS+P +++S++LL +G +L+ +L+ P+
Sbjct: 344 GRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLN 403
Query: 128 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFR 187
I+ ++ + D R+ NE + + K AWE F + +++ R EL + R
Sbjct: 404 GAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLR 463
Query: 188 KAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNM 247
Q SF+ N+ P L+ V F ++ LLG +LTP F +++L VLR P FM+P +
Sbjct: 464 DVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWV 523
Query: 248 ITQVVNANVSLKRMEEFL 265
T V+ VS+KR+ FL
Sbjct: 524 FTTVLQFLVSIKRISTFL 541
|
Length = 1560 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 9e-36
Identities = 73/238 (30%), Positives = 121/238 (50%), Gaps = 21/238 (8%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 344
+ +N F + P L +I+LDIP G VA+VG +G GK++L++ ++ V
Sbjct: 1 VEFKNVTFRYP-GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVN-LIPRFYDVDSGR 58
Query: 345 AVIRGT-------------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 391
+I G + V Q ++FN TV +NI +G A E+ + +
Sbjct: 59 ILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGR--PGATREEVEEAARAAN 116
Query: 392 DLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 448
+ LP G T IGERGV +SGGQ+QR+++ARA+ + + I D+ SALD R
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 449 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 506
V + + +T ++ ++L + DRI+++ +G + E GT E+L G ++ KL
Sbjct: 177 V-QAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 1e-35
Identities = 128/519 (24%), Positives = 219/519 (42%), Gaps = 67/519 (12%)
Query: 21 VVLGVLCEAQYF----------QNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKI 70
++L VL Y ++R+G +L L +F S G
Sbjct: 46 LMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFS------ATLRRGSG 99
Query: 71 TNLMT-TDAEQLQQ--VCQALHTLWSAPFRIIISLV--LLYNELGVASLLGALLLV---F 122
L D +QL+Q L + AP+ I LV LL+ +G+ +L GA++LV
Sbjct: 100 DGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAVVLVGLAL 159
Query: 123 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 182
+ T +K KE + + + L + L + ++ + + +
Sbjct: 160 LNNRAT------KKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKY 213
Query: 183 LSWFRKAQ----FLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLR 238
LS A L+ + + + LV + G + + G++TP L
Sbjct: 214 LSAQSAASDRAGMLSNLSKYFRIVLQSLVLGL--GAYLAIDGEITPGMMIAGSILVGRAL 271
Query: 239 FPLFMLPNMITQVVNANVSLKRMEEFL----LAEEKILLPNPPLTSGLPAISIRNGYFSW 294
P+ Q A + KR+ E L + + LP P + ++I
Sbjct: 272 APIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVP----- 326
Query: 295 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA----SAVIRG- 349
++PTL I+ + G +AI+G +G GK++L ++G PP S + A ++
Sbjct: 327 -PGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQW 385
Query: 350 -------TVAYVPQVSWIFNATVRDNIL-FGSAFEPARYEKAIDVTSLQ--HDLDL-LPG 398
+ Y+PQ +F TV +NI FG +P EK I+ L H+L L LP
Sbjct: 386 DRETFGKHIGYLPQDVELFPGTVAENIARFGENADP---EKIIEAAKLAGVHELILRLPD 442
Query: 399 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI-RGE 457
G T IG G +SGGQ+QR+++ARA+Y + + + D+P S LD G Q I +
Sbjct: 443 GYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE-EGEQALANAIKALK 501
Query: 458 LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
G T V++T++ L VD+I+++ +G + G +++
Sbjct: 502 ARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEV 540
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 2e-35
Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 28/242 (11%)
Query: 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 967
++ E++ Y P+L LSF+IP + GI+G G+GKS++L L +++ + G +
Sbjct: 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 968 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TV-------RF-NLDPFSEHSDADLWEA 1018
L+DG DIA +L K L +PQSP G TV R+ +L F S D
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 1019 LERAHLKDAIRRNSLGLDAQVSEAGENF---SVGQRQLLSLSRALLRRSKILVLDEATAA 1075
E L LGL A S G+RQ + ++RAL + + IL+LDE T+
Sbjct: 120 EEALEL--------LGL---EHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 1076 VDVRTDALIQKTIRE--EFKSCTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLS 1132
+D+ + + +R+ K T++++ H LN D ++LL G+++ TPEE+L+
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228
Query: 1133 NE 1134
E
Sbjct: 229 EE 230
|
Length = 258 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-34
Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 24/244 (9%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 344
I +N F + S+ + P L ++L IP G VA+VG +G GK++++S + P S
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 345 AV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ-- 390
+ +R + V Q +F+ T+ +NI +G A E+ +
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGK--PDATDEEVEEAAKKANI 118
Query: 391 HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 449
HD + LP G T +GERG +SGGQKQR+++ARA+ N + + D+ SALDA + V
Sbjct: 119 HDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178
Query: 450 ---FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 506
DR ++ G+T +++ ++L + D I ++ G V E+GT ++L ++ KL
Sbjct: 179 QEALDRAMK----GRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKL 234
Query: 507 MENA 510
++
Sbjct: 235 VKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 8e-34
Identities = 98/360 (27%), Positives = 167/360 (46%), Gaps = 37/360 (10%)
Query: 780 KAYDRMADINGK--SMDKNIRYTL--VNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 835
A +R +D NG ++ + +R L +G WL I+ EI G+MI
Sbjct: 233 SAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMI------------- 279
Query: 836 AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 895
A + +L AL L A + A S +R+ + A +
Sbjct: 280 -------AGS--ILSGRALAPIDLAIANWKQFVAARQSY---KRLNELLAELPAAAERMP 327
Query: 896 SNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNT 955
P G++ E + + P+L G+SF + + +GI+G +G+GKS++
Sbjct: 328 LPAP------QGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARL 381
Query: 956 LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD- 1014
L I G + +DG D+ ++ L + +G +PQ LF GT+ N+ F E +D +
Sbjct: 382 LVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEK 441
Query: 1015 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1074
+ EA A + + I R G D ++ E G S GQRQ ++L+RAL ++VLDE +
Sbjct: 442 VIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNS 501
Query: 1075 AVDVRTD-ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1133
+D + AL + + + T+++IAHR + + D+IL+L GR+ + EE+L+
Sbjct: 502 NLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 1e-33
Identities = 128/509 (25%), Positives = 227/509 (44%), Gaps = 56/509 (11%)
Query: 29 AQYFQN--VMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ 86
+ + V ++ + +F K L + +G + + +T D+EQ+
Sbjct: 70 CSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAAT 129
Query: 87 ALHTLWSAPFRIIISL--VLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQR 144
+ +I L VLLY + L++V M PV + ++ R+ K + +
Sbjct: 130 DAFIVLVRETLTVIGLFIVLLYYSWQLT-----LIVVVMLPVLSILMRRVSKRLRRISKE 184
Query: 145 TDKRIGLMNEILAAM----DAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFIL 200
+G + + VK + + + V N R A + + S
Sbjct: 185 IQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNR---RLAMKMTSAGSI-- 239
Query: 201 NSIPVLVTVVSFGMFTLLGGDLTPARA-FTSLSLFAVLRFPLFMLPNMITQVVNANVSLK 259
S P+ + S + +L L A+A + F + L + + N N ++
Sbjct: 240 -SSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQ 298
Query: 260 RMEEFLLAEEKI--LLPNPP-LTSGLPA-------ISIRNGYFSWDSKAERPTLLNINLD 309
R L A E + LL +PP +G A + RN F + +RP L +I+L
Sbjct: 299 RG---LAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPG-RDRPALDSISLV 354
Query: 310 IPVGSLVAIVGGTGEGKTSLISAM-----------LGELPPVSDAS-AVIRGTVAYVPQV 357
I G VA+VG +G GK++L++ + L + ++D + A +R VA V Q
Sbjct: 355 IEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQD 414
Query: 358 SWIFNATVRDNILFGSAFE--PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 415
+FN T+ +NI +G + A E+A+ Q +D LP G T IGE GV +SGGQ
Sbjct: 415 VVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474
Query: 416 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLHF 472
+QR+++ARA+ ++ + I D+ SALD R V +R ++ G+T +++ ++L
Sbjct: 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ----GRTTLVIAHRLST 530
Query: 473 LSQVDRIILVHEGMVKEEGTFEDL-SNNG 500
+ + DRI+++ +G + E GT +L + NG
Sbjct: 531 IEKADRIVVMDDGRIVERGTHNELLARNG 559
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 2e-33
Identities = 102/436 (23%), Positives = 192/436 (44%), Gaps = 35/436 (8%)
Query: 98 IIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMN---- 153
+I+ L L+ LL L L+ + PV II ++ + + ++N
Sbjct: 284 VIVGLFLVRQN----MLLFLLSLLSI-PVYAVIIILFKRTFNKLNHDAMQANAVLNSSII 338
Query: 154 EILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVL------V 207
E L ++ +K E SK+ + E + F +I + V
Sbjct: 339 EDLNGIETIKSLTSEAERYSKI----DSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNV 394
Query: 208 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLA 267
++ G + ++ G LT + T +L + PL + N+ ++ A V+ R+ E L
Sbjct: 395 VILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLV 454
Query: 268 EEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKT 327
+ + + I S+ L +I+L I + S IVG +G GK+
Sbjct: 455 DSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKS 514
Query: 328 SLISAMLGELPPVSDA------------SAVIRGTVAYVPQVSWIFNATVRDNILFGS-- 373
+L ++G S +R + Y+PQ +IF+ ++ +N+L G+
Sbjct: 515 TLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE 574
Query: 374 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 433
A ++ ++ D++ +P G TE+ E G +ISGGQKQR+++ARA+ ++S V I
Sbjct: 575 NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLI 634
Query: 434 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 493
D+ S LD +++ + + L KT + V ++L Q D+II++ G + E+G+
Sbjct: 635 LDESTSNLDTITEKKIVNNLLN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSH 692
Query: 494 EDLSNNGELFQKLMEN 509
++L + + L+ N
Sbjct: 693 DELLDRNGFYASLIHN 708
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 2e-33
Identities = 90/298 (30%), Positives = 150/298 (50%), Gaps = 15/298 (5%)
Query: 845 TMGLLLSYALNITSLLTAVLRLASLAENSLNAVER----VGNYIELPSEAPLVIESNRPP 900
T+G L S+ + + ++ +L LA + N VER + +EAP+V + + P
Sbjct: 252 TLGQLTSFVMYLGLMIWPMLALAWM----FNIVERGSAAYSRIRAMLAEAPVVKDGSEPV 307
Query: 901 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 960
P G + Y P L ++FT+ P +GI G TG+GKS++L+ + R
Sbjct: 308 P--EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365
Query: 961 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWE 1017
++ G I + K L R L ++ Q+P LFS TV N+ P + + ++
Sbjct: 366 DVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP--DATQQEIEH 423
Query: 1018 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1077
A + D I R G D +V E G S GQ+Q +S++RALL ++IL+LD+A +AVD
Sbjct: 424 VARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483
Query: 1078 VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
RT+ I +R+ + T++I AHRL+ + + IL++ G + + ++L G
Sbjct: 484 GRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSG 541
|
Length = 569 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 5e-33
Identities = 67/217 (30%), Positives = 121/217 (55%), Gaps = 13/217 (5%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDAS-AVIRGTVAY 353
+N +P G +A+VG +G GKTSL++A+LG LP + + R +++
Sbjct: 368 PLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSW 427
Query: 354 VPQVSWIFNATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 412
V Q + + T+RDN+L G + ++A++ + L LLP G T IG++ +S
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487
Query: 413 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 472
GQ QR+++ARA+ + + D+P ++LDAH + V + + +T ++VT+QL
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM-QALNAASRRQTTLMVTHQLED 546
Query: 473 LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 509
L+Q D+I ++ +G + ++G + +LS G LF L+ +
Sbjct: 547 LAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAH 583
|
Length = 588 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-32
Identities = 93/356 (26%), Positives = 161/356 (45%), Gaps = 35/356 (9%)
Query: 780 KAYDRMADINGKS-MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAEN 838
A DR ++ S + + +LV +G +LAI EI G+MI GS
Sbjct: 219 AASDRAGMLSNLSKYFRIVLQSLV-LGLGAYLAIDGEITPGMMI----------AGS--- 264
Query: 839 QEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNR 898
+L+ AL + S + A +R+ + +
Sbjct: 265 ---------ILVGRALAPIDGAIGGWKQFS---GARQAYKRLNELLANYPSRDPAMPLPE 312
Query: 899 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 958
P G + E+V + P L G+SF++ + + I+G +G+GKS++ +
Sbjct: 313 P------EGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG 366
Query: 959 IVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD-LWE 1017
I G + +DG D+ ++ K +G +PQ LF GTV N+ F E++D + + E
Sbjct: 367 IWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIE 426
Query: 1018 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1077
A + A + + I R G D + G S GQRQ ++L+RAL K++VLDE + +D
Sbjct: 427 AAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486
Query: 1078 VRTD-ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1132
+ AL + + T+++I HR + + D+IL+L GR+ + +E+L+
Sbjct: 487 EEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 9e-32
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 39/215 (18%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
+ +V Y + VL LS + +K+ ++GR+G+GKS++L L ++ ++G I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 1028
+DG ++ L ++ ++ Q P LF T+R NL
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 1029 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1088
G FS G+RQ L+L+R LL+ + I++LDE T +D T+ + I
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141
Query: 1089 REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1123
E K T++ I H L I D+IL L++G+++
Sbjct: 142 FEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 122 bits (310), Expect = 1e-31
Identities = 64/221 (28%), Positives = 116/221 (52%), Gaps = 20/221 (9%)
Query: 910 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 969
+ +++ Y P L +S TI + V IVG G+GKS++L L ++ G +L+
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 970 DGFDIAKFGLMDLRKILGIIPQSP--VLFSGTVR----FNLDPFSEHSDADLWEALERAH 1023
DG D+ K L +LR+ +G++ Q+P F TV F L+ + ++ E +E A
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG-LPEEEIEERVEEA- 118
Query: 1024 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDA 1082
L+ +GL+ + S GQ+Q ++++ L IL+LDE TA +D
Sbjct: 119 LEL------VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 1083 LIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGR 1120
L++ K ++ E K T++I+ H L+ +++ DR+++L+ G+
Sbjct: 173 LLELLKKLKAEGK--TIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 5e-31
Identities = 124/522 (23%), Positives = 216/522 (41%), Gaps = 68/522 (13%)
Query: 14 AFSIFVGVVLGVLC--EAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKIT 71
++ + +A + ++R+G RL L VF S R + +
Sbjct: 64 MLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL 123
Query: 72 NLMTTDAEQLQQVCQ-----ALHTLWSAPFRIIISLV--LLYNELGVASLLGALLLVFMF 124
L QV Q L + AP+ + V L + LG+ +L GA++LV +
Sbjct: 124 R-------DLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILV-VL 175
Query: 125 PVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELS 184
+ +R K KE + + + L + L + ++ + + LS
Sbjct: 176 ALLNERATR--KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLS 233
Query: 185 WFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLL--GGDLTPARAFTSLSLFAVLRFPLF 242
+A + ++ + + G+ L G++TP L P+
Sbjct: 234 AQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPID 293
Query: 243 MLPNMITQVVNANVSLKRMEEFL----LAEEKILLPNPP-------LTSGLPAISIRNGY 291
+ Q V A S KR+ E L A E++ LP P LT+ P
Sbjct: 294 LAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPG------- 346
Query: 292 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA----SAVI 347
++P L I+ + G + I+G +G GK++L ++G PP S + A +
Sbjct: 347 ------QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL 400
Query: 348 RG--------TVAYVPQVSWIFNATVRDNIL-FGSAFEPAR-YE--KAIDVTSLQHDLDL 395
R + Y+PQ +F+ T+ +NI FG +P + E + V H+L L
Sbjct: 401 RQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGV----HELIL 456
Query: 396 -LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 454
LP G T IGE G +SGGQ+QR+++ARA+Y + + + D+P S LD+ G I
Sbjct: 457 RLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS-EGEAALAAAI 515
Query: 455 RG-ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 495
+ G T V++ ++ L+ VD+I+++ +G + G E+
Sbjct: 516 LAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREE 557
|
Length = 580 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 5e-31
Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 46/216 (21%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+ ++ RY L +S T+ + G++G GAGK++++ + +++ + G I
Sbjct: 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 1027
+ G DI K ++++ +G +P+ P L+ TVR NL
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 1028 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1087
S G +Q L+L++ALL ++L+LDE T+ +D + +
Sbjct: 96 ------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 1088 IREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 1121
+RE K T+L+ +H L CDR+ +L++GR+
Sbjct: 138 LRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 9e-31
Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 21/238 (8%)
Query: 285 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD- 342
I+ + F + K + P +L NI+L I G +V IVG +G GK++L + P +
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 343 -----------ASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ- 390
A +R V V Q + +FN ++RDNI A E+ I+ L
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNI--ALADPGMSMERVIEAAKLAG 116
Query: 391 -HDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 448
HD LP G T +GE+G +SGGQ+QR+++ARA+ N + IFD+ SALD
Sbjct: 117 AHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHA 176
Query: 449 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 506
+ R + +G+T +++ ++L + DRII++ +G + E+G+ ++L L+ L
Sbjct: 177 IM-RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 62/234 (26%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 909 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
++ +++ + + L +SF+I + +G+VG +G+GKS++ + +++ G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 967 ILIDGFDIAKFG---LMDLRKILGIIPQ------SPVLFSGTVRFNL-DPFSEHSDADLW 1016
I+ DG D+ K RK + ++ Q +P + T+ + +P H
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM---TIGEQIAEPLRIHGKLSKK 118
Query: 1017 EALERAHLKDAIRRNSLGLDAQVSEA--GENFSVGQRQLLSLSRALLRRSKILVLDEATA 1074
EA + A L + +GL +V E S GQRQ ++++RAL K+L+ DE T+
Sbjct: 119 EARKEAVLLLLVG---VGLPEEVLNRYPHE-LSGGQRQRVAIARALALNPKLLIADEPTS 174
Query: 1075 AVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEY 1124
A+DV A I K ++EE T+L I H L + DR+ ++ +G+++E
Sbjct: 175 ALDVSVQAQILDLLKKLQEELG-LTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 5e-30
Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 33/242 (13%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+ E++ + Y PVL +S ++ + ++G GAGKS++L + +++ G I
Sbjct: 5 IEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVL---FSGTVR-----------FNLDPFSEHSDAD 1014
I G + K R +G +PQ + F TV+ ++
Sbjct: 63 IFGKPVRKR---RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119
Query: 1015 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1074
+ EALER ++D D Q+ E S GQ+Q + L+RAL + +L+LDE
Sbjct: 120 VDEALERVGMEDLR-------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFT 168
Query: 1075 AVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132
VDV I ++E + T+L++ H L ++ DR++ L+ ++ PEE+L+
Sbjct: 169 GVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227
Query: 1133 NE 1134
E
Sbjct: 228 EE 229
|
Length = 254 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 6e-30
Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 30/243 (12%)
Query: 909 IKFEDVVLRY---RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 965
I+ E+V + L +S IP + GI+G +GAGKS++L + + G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 966 RILIDGFDIA---KFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALER 1021
+ +DG D+ + L LR+ +G+I Q L S TV N+ LE
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVA-----------FPLEL 110
Query: 1022 AHL-KDAI--RRNSL----GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1074
A + K I R L GL + S GQ+Q ++++RAL KIL+ DEAT+
Sbjct: 111 AGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATS 170
Query: 1075 AVDVR-TDALIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130
A+D T ++++ K I E T+++I H + + CDR+ +LD GR++E T E+
Sbjct: 171 ALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
Query: 1131 LSN 1133
+N
Sbjct: 230 FAN 232
|
Length = 339 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 8e-30
Identities = 100/467 (21%), Positives = 184/467 (39%), Gaps = 50/467 (10%)
Query: 38 VGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQV-CQALHTLWSAPF 96
R L V+ + R R+ G + + D + LQ + + + A
Sbjct: 80 AALRSLGALRVRVYERLARQALAGRRRLRRGDLLGRLGADVDALQDLYVRVIVPAGVALV 139
Query: 97 RIIISLVL---LYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMN 153
++ L + G LL F+ P+ + +R R L
Sbjct: 140 VGAAAVAAIAVLSVPAALILAAGLLLAGFVAPLVSLRAARAA-----EQALARLRGELAA 194
Query: 154 EILAAMDAV---KCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLV--- 207
++ A+D + ++V+ + R + AA + + ++ +L
Sbjct: 195 QLTDALDGAAELVASGALPAALAQVEEA---DRELTRAERRAAAATA-LGAALTLLAAGL 250
Query: 208 TVVS---FGMFTLLGGDLTPAR----AFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKR 260
V+ G + G L P L+ F LP Q+ + +R
Sbjct: 251 AVLGALWAGGPAVADGRLAPVTLAVLVLLPLAAFE----AFAALPAAAQQLTRVRAAAER 306
Query: 261 MEEFLLAEEKILLPNPP----LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLV 316
+ E L A + + P + G P + +R+ + P L ++LD+P G V
Sbjct: 307 IVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAP--PVLDGVSLDLPPGERV 364
Query: 317 AIVGGTGEGKTSLISAMLGELPP------VSDASA------VIRGTVAYVPQVSWIFNAT 364
AI+G +G GK++L++ + G L P + +R V+ Q + +F+ T
Sbjct: 365 AILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTT 424
Query: 365 VRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 423
VR+N+ A++ L L LP G T +GE G +SGG++QR+++AR
Sbjct: 425 VRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALAR 484
Query: 424 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 470
A+ +++ + + D+P LDA ++ + LSG+T VL+T+ L
Sbjct: 485 ALLADAPILLLDEPTEHLDAETADELL-EDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 9e-30
Identities = 68/269 (25%), Positives = 115/269 (42%), Gaps = 27/269 (10%)
Query: 886 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTIPPS 936
+P I + + ++ RY + +SF +
Sbjct: 258 VPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG 317
Query: 937 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG--FDIAKFGLMDLRKILGIIPQSPV 994
+ +G+VG +G+GKS++ L ++ G I+ DG D+ L LR+ + ++ Q P
Sbjct: 318 ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY 377
Query: 995 LF---SGTVRFNL-DPFSEHSDADLWEALER-AHLKDAIRRNSLGLDAQVSEAGENFSVG 1049
TV L +P H E R A L + + LD E S G
Sbjct: 378 SSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE----LSGG 433
Query: 1050 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTIREEFKSCTMLIIAHRLN 1105
QRQ ++++RAL K+L+LDE +A+DV A L++ ++EE T L I+H L
Sbjct: 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD-LQEELG-LTYLFISHDLA 491
Query: 1106 TIID-CDRILLLDSGRVLEYDTPEELLSN 1133
+ DR+ ++ GR++E E++ N
Sbjct: 492 VVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 9e-30
Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 58/213 (27%)
Query: 910 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 969
+ E++ RY L +S T+ + V +VG G+GKS++L + +++ G ILI
Sbjct: 1 EIENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 970 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 1029
DG DIAK L
Sbjct: 59 DGKDIAK-----------------------------------------------LPLEEL 71
Query: 1030 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 1089
R +G Q S GQRQ ++L+RALL +L+LDE T+ +D + + + +R
Sbjct: 72 RRRIGYVPQ-------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124
Query: 1090 EEFKS-CTMLIIAHRLNTIID-CDRILLLDSGR 1120
E + T++I+ H DR+++L G+
Sbjct: 125 ELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-29
Identities = 111/452 (24%), Positives = 206/452 (45%), Gaps = 49/452 (10%)
Query: 86 QALHTLWSAPFRII-ISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQR 144
AL + F ++ ++++ Y+ ++G+L+ + V F+ ++K ++ +R
Sbjct: 255 SALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSV--FVGPILRKRVEDKFER 312
Query: 145 TDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP 204
+ + E + ++ +K A E FQ++ ++ + L + I
Sbjct: 313 SAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQ 372
Query: 205 VLVTVVS--FGMFTLLGGDLTPAR--AFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKR 260
L + FG ++GG L+P + AF L+ P+ L + ++L+R
Sbjct: 373 KLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQ--PVLRLAQLWQDFQQTGIALER 430
Query: 261 MEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDS-----KAERPTLL-NINLDIPVGS 314
+ + L + P P ++GL A+ G ++++ + P +L N+NLDI G
Sbjct: 431 LGDILNS------PTEPRSAGLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGE 484
Query: 315 LVAIVGGTGEGKTSLISAM-----------------LGELPPVSDASAVIRGTVAYVPQV 357
+ IVG +G GK++L + L P +R + V Q
Sbjct: 485 FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAW-----LRRQMGVVLQE 539
Query: 358 SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL---LPGGDVTEIGERGVNISGG 414
+ +F+ ++RDNI + P +E I L D LP G TE+GE+G N+SGG
Sbjct: 540 NVLFSRSIRDNIALCNPGAP--FEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597
Query: 415 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 474
Q+QR+++ARA+ N + IFD+ SALD + R +R G+T +++ ++L +
Sbjct: 598 QRQRIAIARALVGNPRILIFDEATSALDYE-SEALIMRNMREICRGRTVIIIAHRLSTVR 656
Query: 475 QVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 506
DRII++ +G + E G E+L L+ +L
Sbjct: 657 ACDRIIVLEKGQIAESGRHEELLALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 115 bits (292), Expect = 1e-29
Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 50/218 (22%)
Query: 912 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 971
E++ + Y VL LS +I + VGI+G GAGKS++L TL +++ G IL+DG
Sbjct: 3 ENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 972 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER---AHLKDAI 1028
D+A +L + + +PQ ALE AHL D
Sbjct: 61 KDLASLSPKELARKIAYVPQ--------------------------ALELLGLAHLAD-- 92
Query: 1029 RR-NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1087
R N L S G+RQ + L+RAL + IL+LDE T+ +D+ + +
Sbjct: 93 RPFNEL-------------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 1088 IREEFKSCTMLIIA--HRLNTIID-CDRILLLDSGRVL 1122
+R + ++ H LN DR++LL GR++
Sbjct: 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 2e-29
Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 27/238 (11%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER---- 964
I+ D+ + Y + L +S IP + ++G +G GKS++L L R+ +L
Sbjct: 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 965 -GRILIDGFDIAK--FGLMDLRKILGIIPQSPVLFSGTVRFNLD--------PFSEHSDA 1013
G +L+DG DI +++LR+ +G++ Q P F G++ N+ E D
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE 118
Query: 1014 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 1073
+ EAL +A L D ++ L S GQ+Q L L+RAL ++L+LDE T
Sbjct: 119 RVEEALRKAALWDEVKDRLHALG---------LSGGQQQRLCLARALANEPEVLLLDEPT 169
Query: 1074 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEEL 1130
+A+D + A I++ I E K T++I+ H + DR L +GR++E+ E++
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 4e-29
Identities = 63/240 (26%), Positives = 122/240 (50%), Gaps = 27/240 (11%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+ E++ RY L +S I ++V ++G G+GKS++L L +++ G +L
Sbjct: 4 IEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 969 IDGFDI-AKFGLMDLRKILGIIPQSPV--LFSGTVRFNLD------PFSEHS-DADLWEA 1018
+DG D ++ L++LR+ +G++ Q+P LF TV + + + EA
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA 122
Query: 1019 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1078
LE L++ + R L S GQ+Q ++++ L +IL+LDE TA +D
Sbjct: 123 LELVGLEELLDRPPFNL-----------SGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP 171
Query: 1079 RTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
+ + + +++ E T++I+ H L +++ DR+++LD G++L P E+ ++
Sbjct: 172 KGRRELLELLKKLKEEGGK-TIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
|
Length = 235 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-28
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 18/217 (8%)
Query: 909 IKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 965
I ED + E L ++ +P + V IVG G+GKSS+L+ L + ELE+
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSAL--LGELEK- 57
Query: 966 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK 1025
G + + + + Q P + +GT+R N+ + + ++ L+
Sbjct: 58 ----------LSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALE 107
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALI 1084
+ G ++ E G N S GQ+Q +SL+RA+ + I +LD+ +AVD +
Sbjct: 108 PDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIF 167
Query: 1085 QKTIREEFKSC-TMLIIAHRLNTIIDCDRILLLDSGR 1120
+ I + T +++ H+L + D+I++LD+GR
Sbjct: 168 ENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 2e-28
Identities = 113/440 (25%), Positives = 192/440 (43%), Gaps = 49/440 (11%)
Query: 102 LVLLYNEL--GVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAM 159
L+LLY+ + + A+ ++ + V + ++L ++ + T I + I
Sbjct: 287 LMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSI---- 342
Query: 160 DAVKCYAWENSFQSKVQ----NVRNDELSWFRKAQFLAACNSFI--LNSIPVLVTVVSFG 213
+ +K E+ F S+ + N + Q L + + LNS +LV G
Sbjct: 343 ETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILV----VG 398
Query: 214 MFTLLGGDLTPAR--AFTSLSLFAVLRF--PLFMLPNMITQVVNANVSLKRMEEFLLAEE 269
++ G LT AF SL + F P+ L + L R+++ L
Sbjct: 399 GLRVMEGQLTIGMLVAFQSL----MSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454
Query: 270 KILLPNPPLTSGLPA--------ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGG 321
LL + + +RN F + S E P + N +L + G VA+VGG
Sbjct: 455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGG 513
Query: 322 TGEGKTS---LISAML----GEL-----PPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 369
+G GK++ L++ + GE+ P V+ +VA V Q ++F TVRDN+
Sbjct: 514 SGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNL 573
Query: 370 -LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 428
L+ A +A ++ + PGG E+ E G N+SGGQ+QR+ +ARA+ N
Sbjct: 574 TLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN 633
Query: 429 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVK 488
+ I D+ SALD + + D R G T ++V ++L + D II++ G V
Sbjct: 634 PSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690
Query: 489 EEGTFEDLSNNGELFQKLME 508
+ GT E+L G + +L+
Sbjct: 691 QRGTHEELWAVGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-28
Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 34/224 (15%)
Query: 910 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 969
+ ED+ + Y PVL +SF + P + + IVG GAGKS++L + +++ G I +
Sbjct: 1 EVEDLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 970 DGFDIAKFGLMDLRKILGIIPQSPVL---FSGTVR-----------FNLDPFSEHSDADL 1015
G + K RK +G +PQ + F +VR S+ A +
Sbjct: 59 FGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKV 113
Query: 1016 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1075
EALER L + R Q+ E S GQ+Q + L+RAL++ +L+LDE A
Sbjct: 114 DEALERVGLSELADR-------QIGEL----SGGQQQRVLLARALVQDPDLLLLDEPFAG 162
Query: 1076 VDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLD 1117
VD +T I + +RE + T+L++ H L +++ DR+LLL+
Sbjct: 163 VDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLN 206
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-28
Identities = 44/237 (18%), Positives = 86/237 (36%), Gaps = 3/237 (1%)
Query: 8 WIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFAS 67
A + VL L F R+G R+R L A+ R+ L + +
Sbjct: 38 SSLISLAILLIAVGVLQGLLLQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSV 97
Query: 68 GKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVF-MFPV 126
G++T+ +T D +++ L+ ++ ++ G L L ++ + +
Sbjct: 98 GELTSRLTNDVSKIRDGLGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILL 157
Query: 127 QTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRND-ELSW 185
+ +++KL ++ + K + E L+ + VK + E + D E +
Sbjct: 158 SAVLAKKLRKLNRKEQKAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAG 217
Query: 186 FRKAQFLAACNSFILNSIP-VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPL 241
+KA + FG + ++ G L+ F LSL L PL
Sbjct: 218 IKKAITAGLSFGITQLISYLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 5e-28
Identities = 75/247 (30%), Positives = 119/247 (48%), Gaps = 39/247 (15%)
Query: 909 IKFEDV--VLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER- 964
I+ ++V V L +S ++P + GI+GR+GAGKS TL R + LER
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKS----TLIRCINGLERP 57
Query: 965 --GRILIDGFDIAKFGLMDLRKI---LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE-A 1018
G +L+DG D+ +LRK +G+I Q FNL S + +
Sbjct: 58 TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQ---------HFNL--LSSRTVFENVALP 106
Query: 1019 LERAHLKDAIRR-------NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1071
LE A + A +GL+ + S GQ+Q + ++RAL K+L+ DE
Sbjct: 107 LEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDE 166
Query: 1072 ATAAVDVRTD----ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1126
AT+A+D T AL++ I E T+++I H + + CDR+ +++ G V+E T
Sbjct: 167 ATSALDPETTQSILALLRD-INRELG-LTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224
Query: 1127 PEELLSN 1133
EE+ +N
Sbjct: 225 VEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-27
Identities = 123/536 (22%), Positives = 235/536 (43%), Gaps = 58/536 (10%)
Query: 6 PAWIGYIYAFSIF-VGVVLGVLCEAQYFQNVM-RVGFRLRSTLVAAVFRKSLRITHEARK 63
PA I+ + + + F M R+ R+R L ++ R+ L E +
Sbjct: 198 PALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENK- 256
Query: 64 NFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFM 123
+G++T+ +++D Q + ++L + R ++ L+ L + S ++ +
Sbjct: 257 ---TGELTSRLSSDT---QTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLIN 310
Query: 124 FPVQTFIIS-----RMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNV 178
P+ F+ R Q L++E + K + E L+ M V+ +A E S+ +
Sbjct: 311 LPL-VFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEA 369
Query: 179 RNDELSWFRKAQFLAACNSFI--LNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAV 236
+ L ++ A + + + + V V+ GG L +S +L +
Sbjct: 370 LEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLY------YGGQLVLTGKVSSGNLVS- 422
Query: 237 LRFPLFMLPNM-ITQVVNANVSL-KRMEEFLLAEEKIL-----LPNPPLTSGLPA----- 284
F+L + + V + M + + A EK+ PN PLT L
Sbjct: 423 -----FLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEG 477
Query: 285 -ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-------GE 336
I ++ FS+ ++ + P L + + G +VA+VG +G GK+++ + + G+
Sbjct: 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537
Query: 337 L----PPVSDASAV-IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 391
+ P+ + VA V Q +F+ +VR+NI +G P A + H
Sbjct: 538 VLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAH 597
Query: 392 D-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 450
D + P G TE+GE+G +SGGQKQR+++ARA+ V I D+ SALDA + +
Sbjct: 598 DFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQ 657
Query: 451 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 506
+ + +T +L+ ++L + + D+I+++ +G V E GT + L + ++ L
Sbjct: 658 E---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 16/231 (6%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+ + + VL G+ + + + I+G +G+GKS++L + ++ + G +L
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 969 IDGFDIAKFG---LMDLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAH 1023
IDG DI+ L LR+ +G++ QS LF TV N+ P EH+ E E
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL 118
Query: 1024 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-VRTDA 1082
K ++GL S G ++ ++L+RAL ++L+ DE TA +D + +
Sbjct: 119 EK----LEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGV 174
Query: 1083 LIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130
+ +++++E T +++ H L+T DRI +L G+++ TPEEL
Sbjct: 175 IDDLIRSLKKELG-LTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-26
Identities = 63/239 (26%), Positives = 115/239 (48%), Gaps = 42/239 (17%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 341
I +R S+ R L ++LD+ G ++AI+G +G GK++L+ ++G L P S
Sbjct: 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 342 -----DASAV-------IRGTVAYVPQVSWIFNA-TVRDNILFG----SAFEPARYEK-- 382
D S + +R + + Q +F++ TV +N+ F + +
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 383 --AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 440
++ L+ DL P +SGG K+RV++ARA+ + ++ ++D+P +
Sbjct: 118 LEKLEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 441 LDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 496
LD + V D IR + G T ++VT+ L + DRI ++++G + EGT E+L
Sbjct: 167 LDP-IASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 4e-26
Identities = 61/250 (24%), Positives = 119/250 (47%), Gaps = 19/250 (7%)
Query: 909 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----L 962
++ E++ + + P + +SF + P + +GIVG +G+GKS++ L ++ +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 963 ERGRILIDGFDIAKFGLMDLRKILG----IIPQSPV-LFSG--TVRFNLD-PFSEHSDAD 1014
G +++DG D+ ++RK+ G +I Q P+ + T+ + H
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 1015 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1074
EA +RA + + + L + S G RQ + ++ AL + K+L+ DE T
Sbjct: 126 RAEARKRA--VELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTT 183
Query: 1075 AVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131
A+DV T A I +++ +L I H L + + DR++++ G ++E EE+L
Sbjct: 184 ALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243
Query: 1132 SNEGSSFSKM 1141
SN +++
Sbjct: 244 SNPQHPYTRG 253
|
Length = 539 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 5e-26
Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 37/248 (14%)
Query: 282 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 341
L I N F + + L +++L+I G V ++G G GK++L+ + G L P S
Sbjct: 1 LRMIEAENLSFRY--PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS 58
Query: 342 -------------DASAVIRGTVAYVPQV--SWIFNATVRDNILFGSAFEP-------AR 379
+ +R V V Q +F TV D + FG R
Sbjct: 59 GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEER 118
Query: 380 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 439
+A+++ L+ LD P N+SGGQKQRV++A + ++ + D+P +
Sbjct: 119 VAEALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTA 167
Query: 440 ALDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 497
LD R++ + + E GKT ++VT+ L + + DR++++ +G + +G ++
Sbjct: 168 GLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIF 227
Query: 498 NNGELFQK 505
N+ EL
Sbjct: 228 NDAELLLA 235
|
Length = 235 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 7e-26
Identities = 65/224 (29%), Positives = 107/224 (47%), Gaps = 38/224 (16%)
Query: 286 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---- 341
++N FS+ RP L +I+L I G V IVG G GK++L+ + G L P S
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 342 --------DASAVIRGTVAYVPQ--VSWIFNATVRDNILFG------SAFE-PARYEKAI 384
+ +R V V Q F TV + + FG E R E+A+
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 385 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 444
++ L+ D P +SGGQKQRV++A + + D+ + D+P + LD
Sbjct: 120 ELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 445 VGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEG 485
R++ + ++ +L GKT ++VT+ L L ++ DR+I++ +G
Sbjct: 169 GRRELLEL-LK-KLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 8e-26
Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 43/248 (17%)
Query: 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS- 341
P I + N S+ + RP L +I+L + G + A++G G GK++L+ A+LG L P S
Sbjct: 3 PMIEVENLTVSYGN---RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSG 59
Query: 342 --------DASAVIRGTVAYVPQ---VSWIFNATVRDNILFG-----------SAFEPAR 379
R + YVPQ V F TV+D +L G + + +
Sbjct: 60 EIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119
Query: 380 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 439
++A++ ++ D +IGE +SGGQKQRV +ARA+ N D+ + D+P +
Sbjct: 120 VDEALERVGMEDLRD-------RQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFT 168
Query: 440 ALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 496
+D G++ ++ EL GKT ++VT+ L + DR+I ++ ++ G E++
Sbjct: 169 GVDVA-GQKEIYDLLK-ELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIA-SGPPEEV 225
Query: 497 SNNGELFQ 504
L +
Sbjct: 226 LTEENLEK 233
|
Length = 254 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 8e-26
Identities = 65/221 (29%), Positives = 112/221 (50%), Gaps = 14/221 (6%)
Query: 909 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
I + + R+R V + G+SFT+ P + G++G GAGK++ L L ++E + G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 967 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 1025
+DGFD+ K R++ G + S L+ T R NL+ F A L+ L+ L
Sbjct: 62 ATVDGFDVVKEPAEARRRL-GFVSDSTGLYDRLTARENLEYF-----AGLY-GLKGDELT 114
Query: 1026 DAIRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1083
+ + LG++ + FS G RQ ++++RAL+ +L+LDE T +DV
Sbjct: 115 ARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRA 174
Query: 1084 IQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVL 1122
+++ IR+ +L H + + CDR+++L GRV+
Sbjct: 175 LREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 59/222 (26%), Positives = 106/222 (47%), Gaps = 14/222 (6%)
Query: 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS- 341
I +N + P L NI+ I G V IVG TG GK+SL+ A+ + S
Sbjct: 1 GDIEFKNVSLRY-RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG 59
Query: 342 -------DASAV----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 390
D S + +R ++ +PQ +F+ T+R N+ + +A++ L+
Sbjct: 60 SILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLK 119
Query: 391 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 450
++ LPGG T + E G N+S GQ+Q + +ARA+ S + + D+ +++D +
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 451 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 492
+ IR T + + ++L + DRI+++ +G V E +
Sbjct: 180 -KTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-25
Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 17/235 (7%)
Query: 277 PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-- 334
P G ++IR F++ + + P L N+N + G ++ I G TG GK++L+S +
Sbjct: 308 PEGRGELDVNIRQ--FTY-PQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH 364
Query: 335 -----GELP----PVSDASA-VIRGTVAYVPQVSWIFNATVRDNILFGS-AFEPARYEKA 383
G++ P++ R +A V Q ++F+ TV +NI G E
Sbjct: 365 FDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHV 424
Query: 384 IDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 443
+ S+ D+ LP G TE+GERGV +SGGQKQR+S+ARA+ N+++ I DD LSA+D
Sbjct: 425 ARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG 484
Query: 444 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 498
Q+ +R G+T ++ ++L L++ I+++ G + + G + L+
Sbjct: 485 RTEHQIL-HNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-25
Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 31/230 (13%)
Query: 920 PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 979
P L+GLS I D V ++G GAGKS++LN + ++ G+ILIDG D+ K +
Sbjct: 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV 75
Query: 980 MDLRKILGIIPQSPVLFSG---TVRFNLDPFSEHSDADLWE-------------ALERAH 1023
+L + Q P+ + T+ NL L E R+
Sbjct: 76 AKRANLLARVFQDPLAGTAPELTIEENL---------ALAESRGKKRGLSSALNERRRSS 126
Query: 1024 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DA 1082
++ + R LGL+ ++S+ S GQRQ LSL A L KIL+LDE TAA+D +T +
Sbjct: 127 FRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEF 186
Query: 1083 LIQKT--IREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGR-VLEYDTPE 1128
+++ T I EE K T L++ H + +D +R+++L SG+ VL+ E
Sbjct: 187 VMELTAKIVEEHK-LTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEE 235
|
Length = 263 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 35/227 (15%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
+L G+S T+P + V ++GR GAGK+++L T+ ++ G I DG DI +
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITG---LPPH 70
Query: 984 KI--LGI--IPQSPVLFSG-TVRFNLD-----PFSEHSDADLWEALER-AHLKDAIRRNS 1032
+ GI +P+ +F TV NL A L E LK+ RR
Sbjct: 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKE--RRKQ 128
Query: 1033 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA-----VDVRTDALIQKT 1087
L S G++Q+L+++RAL+ R K+L+LDE + V+ +A+ +
Sbjct: 129 L---------AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI--RE 177
Query: 1088 IREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
+R+E T+L++ ++ DR +L+ GRV+ T ELL++
Sbjct: 178 LRDE--GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-25
Identities = 127/519 (24%), Positives = 224/519 (43%), Gaps = 80/519 (15%)
Query: 35 VMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDA-EQLQQVCQA--LHTL 91
V+R+ R+ ++L AAV+ + LR+ + +++G + Q++++ L TL
Sbjct: 200 VLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDL--ASRAMGISQIRRILSGSTLTTL 257
Query: 92 WSAPFRIIISLVLL--YN-ELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKR 148
S F ++ +L L+ Y+ +L + ++ AL+ + + V + R ++ L +
Sbjct: 258 LSGIFALL-NLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERR----LLELSGK 312
Query: 149 I-GLMNEIL--------AAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFI 199
I GL +++ A + W F + + AQ + +
Sbjct: 313 ISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRK--------LELSAQRIENLLTVF 364
Query: 200 LNSIPVLVTVVSFG--MFTLLGGDLTPAR------AFTSLSLFAVLRFPLFMLPNMITQV 251
+PVL + F + L G L+ AF S S AV + L N + +
Sbjct: 365 NAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSG-AVTQ-----LSNTLISI 418
Query: 252 VNANVSLKRMEEFLLAEEKILL--PNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 309
+ +R + L A ++ +P SG AI + F + L +++L
Sbjct: 419 LAVIPLWERAKPILEALPEVDEAKTDPGKLSG--AIEVDRVTFRYRPDG-PLILDDVSLQ 475
Query: 310 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRGTVAYVPQ 356
I G VAIVG +G GK++L+ +LG P S D AV R + V Q
Sbjct: 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAV-RRQLGVVLQ 534
Query: 357 VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 416
+ + ++ +NI G+ +A + L D+ +P G T I E G +SGGQ+
Sbjct: 535 NGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR 594
Query: 417 QRVSMARAVYSNSDVFIFDDPLSALD----AHVGRQVFDRCIRGELSGKTRVLVTNQLHF 472
QR+ +ARA+ + +FD+ SALD A V + +R L TR+++ H
Sbjct: 595 QRLLIARALVRKPRILLFDEATSALDNRTQAIVS-ESLER-----LKV-TRIVIA---HR 644
Query: 473 LSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKLME 508
LS + DRI ++ G V ++GT+++L LF +L
Sbjct: 645 LSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 5e-25
Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 56/216 (25%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 341
+ + N F + AE P L N++ I G +AI+G +G GK++L +LG L P S
Sbjct: 1 LEVENVSFRYPG-AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 342 --DASAV-------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 392
D + + + V Y+PQ +F+ ++ +NIL
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL---------------------- 97
Query: 393 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 452
SGGQ+QR+ +ARA+Y N + + D+P S LD G + ++
Sbjct: 98 -------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLD-VEGERALNQ 137
Query: 453 CIRG-ELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 487
I + +G TR+++ ++ L+ DRI+++ +G V
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 6e-25
Identities = 86/311 (27%), Positives = 153/311 (49%), Gaps = 31/311 (9%)
Query: 220 GDLTPARAFTSLSLFAVL-RFPLFMLP-----NMITQVVNANVSLKRMEEFLLAEEKILL 273
G A +L +FA L F M P + QV+ S +R+ E + ++
Sbjct: 271 GGNAQPGALIALFVFAALAAFEALM-PVAGAFQHLGQVIA---SARRINEITEQKPEVTF 326
Query: 274 P-NPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS- 331
P + ++++ N F++ +P L ++L I G VA++G TG GK++L+
Sbjct: 327 PTTSTAAADQVSLTLNNVSFTYP-DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQL 385
Query: 332 ------AMLGEL----PPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY 380
GE+ P++D S A +R ++ V Q +F+AT+RDN+L A A
Sbjct: 386 LTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLL--AAPNASD 443
Query: 381 EKAIDV---TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 437
E I+V L+ L+ G + +GE G +SGG+++R+ +ARA+ ++ + + D+P
Sbjct: 444 EALIEVLQQVGLEKLLEDDKGLN-AWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEP 502
Query: 438 LSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 497
LDA RQ+ + KT +++T++L L Q DRI ++ G + E+GT ++L
Sbjct: 503 TEGLDAETERQIL-ELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELL 561
Query: 498 NNGELFQKLME 508
+ +L +
Sbjct: 562 AQQGRYYQLKQ 572
|
Length = 574 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 8e-25
Identities = 97/380 (25%), Positives = 176/380 (46%), Gaps = 41/380 (10%)
Query: 153 NEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSF 212
N I A A+K F + + + + L W+ A L S I ++ ++
Sbjct: 212 NRIEAETSALK------QFTNNLLSAQYPVLDWWALASGLNRMASTI-----SMMCILVI 260
Query: 213 GMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL 272
G ++ G+L+ + +L L + ITQ+ A L E+F E+ +
Sbjct: 261 GTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKL---EDFFDLEDSVF 317
Query: 273 LPNPPLTSG-LP----AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKT 327
P + LP A+ R+ F + + ++ + +++ + G VAIVG TG GKT
Sbjct: 318 QREEPADAPELPNVKGAVEFRHITFEFANSSQ--GVFDVSFEAKAGQTVAIVGPTGAGKT 375
Query: 328 SLISAMLGELPPVS--------DASAV----IRGTVAYVPQVSWIFNATVRDNILFG--S 373
+LI+ + P D + V +R ++A V Q + +FN ++R+NI G
Sbjct: 376 TLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG 435
Query: 374 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 433
A + YE A + L G D T +GERG +SGG++QR+++ARA+ N+ + +
Sbjct: 436 ATDEEVYEAAKAAAAHDFILKRSNGYD-TLVGERGNRLSGGERQRLAIARAILKNAPILV 494
Query: 434 FDDPLSALDAHVGRQVFDR--CIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 491
D+ SALD +V + +R +T ++ ++L + D ++ + +G + E+G
Sbjct: 495 LDEATSALDVETEARVKNAIDALR---KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKG 551
Query: 492 TFEDLSNNGELFQKLMENAG 511
+F++L F KL+ +G
Sbjct: 552 SFQELIQKDGRFYKLLRRSG 571
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 9e-25
Identities = 68/239 (28%), Positives = 117/239 (48%), Gaps = 22/239 (9%)
Query: 908 SIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 965
+ ++ + Y L+ +S I + +GIVG +G+GKS++ L + + G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 966 RILIDGFDIA-KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL 1024
IL+DG +A K + + ++ Q P +L+P L E L L
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYS-------SLNPRRTVGRI-LSEPLRPHGL 114
Query: 1025 KDAIRR-----NSLGLDAQVSEAGEN-FSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1078
+ +R + +GL + + S GQRQ ++++RAL+ K+L+LDE T+A+DV
Sbjct: 115 SKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
Query: 1079 RTDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
A I +++E T L I+H L + CDRI ++D+G+++E EELLS+
Sbjct: 175 SVQAQILNLLLELKKERG-LTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232
|
Length = 252 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-24
Identities = 58/218 (26%), Positives = 103/218 (47%), Gaps = 46/218 (21%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ ++V RY + VL+ +S I + V ++G +G+GKS++L + + E + G IL
Sbjct: 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 969 IDGFDIAK--FGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 1025
IDG D+ L LR+ +G++ Q LF TV N+
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENI--------------------- 97
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1085
+LGL S GQ+Q ++L+RAL +L+LDE T+A+D T ++
Sbjct: 98 ------ALGL-----------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 1086 KTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGR 1120
++ T++++ H L+ DR+++L G+
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-24
Identities = 43/249 (17%), Positives = 85/249 (34%), Gaps = 6/249 (2%)
Query: 588 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKT---HGPLFYNTIYSLLSF-GQVLVTLA 643
+LI +L L + L + D L I + Q L+
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 644 NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVN 703
+ Y KRL A+L IL PM FF TN +G + +R D+ I + +
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 704 MFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVY 763
+F ++ ++ F+++ ++ +L L R++ R + +
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAG 180
Query: 764 AQFGEALNGLSTIRAYKAYDRMAD-INGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI 822
+ E+L+G+ T++A+ + + + D +++ L
Sbjct: 181 SVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKK-AITAGLSFGITQLISYLSY 239
Query: 823 WLTATFAVV 831
L F
Sbjct: 240 ALALWFGAY 248
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 19/226 (8%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLR 983
++ +S + P + VG++G GAGK+++ N + + G ++ G DI GL
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDIT--GLPPHRI 76
Query: 984 KILGIIP--QSPVLFSG-TVRFNL---DPFSEHSDADLWEALERAHLKDAIRR-----NS 1032
LGI Q LF G TV N+ L R ++A R
Sbjct: 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 1033 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQ--KTIR 1089
+GL N S GQ++ L ++RAL + K+L+LDE A ++ T+ L + + +R
Sbjct: 137 VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELR 196
Query: 1090 EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
+ T+L+I H + ++ DRI++L+ G V+ TPEE+ +N
Sbjct: 197 DRGGV-TILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNP 241
|
Length = 250 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 42/240 (17%)
Query: 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 342
+ + N F + +P L +++ IP G + I+G G GK++L+ + G L P S
Sbjct: 1 MMLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG 57
Query: 343 ------------ASAVIRGTVAYVPQVSWI-FNATVRDNILFG--------SAFEPARYE 381
+ + +AYVPQ F TV + +L G E
Sbjct: 58 EVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE 117
Query: 382 KAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSA 440
+ L+LL + + +R V+ +SGG++QRV +ARA+ + + + D+P S
Sbjct: 118 IVEEA------LELL---GLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 441 LDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFED 495
LD +V + G T V+V LH L+ D +IL+ +G + +GT E+
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMV---LHDLNLAARYADHLILLKDGKIVAQGTPEE 225
|
Length = 258 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 24/227 (10%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
L +SF++ P + G++G GAGK+++ N + + G +L DG DI
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLP-PHEIA 73
Query: 985 ILGIIP--QSPVLFSG-TVRFNL----------DPFSEHSDADLWEALERAHLKDAIRRN 1031
LGI Q P LF TV N+ + + EA ERA + + R
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAE--ELLER- 130
Query: 1032 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQ--KTI 1088
+GL S GQ++ L ++RAL K+L+LDE A ++ T+ L + + +
Sbjct: 131 -VGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL 189
Query: 1089 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
RE + T+L++ H ++ ++ DR+ +LD GRV+ TP+E+ +N
Sbjct: 190 RE--RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNP 234
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 6e-24
Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 41/255 (16%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----------DASAVIRGTVAY 353
++ ++ G + ++G G GKT+L+ + G L P S A +R + Y
Sbjct: 23 GVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82
Query: 354 VPQVSWIF-NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 405
VPQ ++ TVR+N+ F R E+ +++ L+ +
Sbjct: 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRT------ 136
Query: 406 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--GKTR 463
+SGG KQR+S+A A+ + ++ I D+P S LD R+ +R EL+ G
Sbjct: 137 -----LSGGMKQRLSIALALLHDPELLILDEPTSGLDPE-SRREIWELLR-ELAKEGGVT 189
Query: 464 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE 519
+L++ H L + DR+I++++G + EGT E+L + ++E E
Sbjct: 190 ILLST--HILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLEL-AEL 246
Query: 520 KEDGETVDNKTSKPA 534
E + V +
Sbjct: 247 LEGLKLVKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 6e-24
Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 38/248 (15%)
Query: 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 967
++ ++V + VL ++ I + V ++G +G GKS++L + + E G I
Sbjct: 3 ELELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 968 LIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFNL--------DPFSEHSDADLWEA 1018
LIDG D+ R I ++ Q+ L+ TV N+ P +E D + E
Sbjct: 61 LIDGRDVTDLPPEK-RGI-AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEI-DKRVKEV 117
Query: 1019 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1078
+ L+ + R L L S GQRQ ++L+RAL+R+ K+ +LDE + +D
Sbjct: 118 AKLLGLEHLLNRKPLQL-----------SGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 1079 RTDALIQKTIREEFK------SCTMLIIAHRL--NTIIDCDRILLLDSGRVLEYDTPEEL 1130
+ ++ +R E K T + + H + DRI++++ GR+ + TP EL
Sbjct: 167 K----LRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA-DRIVVMNDGRIQQVGTPLEL 221
Query: 1131 LSNEGSSF 1138
+ F
Sbjct: 222 YERPANLF 229
|
Length = 338 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 8e-24
Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 34/244 (13%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ E++ Y P L ++ I P + V I+G +GAGKS++L + R+VE G IL
Sbjct: 2 LEVENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 969 IDGFDIAKFGLMDLRKI----------LGIIPQSPVL---------FSGTVRFNLDPFSE 1009
++G DI K LRK+ +I + VL + T R L FSE
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSE 120
Query: 1010 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 1069
ALER +GL + + + S GQ+Q ++++RAL ++ +++
Sbjct: 121 EDKERALSALER-----------VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILA 169
Query: 1070 DEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1126
DE A++D +T + ++ + T++I H+++ DRI+ L +G ++
Sbjct: 170 DEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229
Query: 1127 PEEL 1130
P EL
Sbjct: 230 PSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 56/214 (26%), Positives = 106/214 (49%), Gaps = 16/214 (7%)
Query: 288 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI 347
+N F++ ++ + L +++ + G + A+VG +G GK++++ A+L ++
Sbjct: 15 QNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVV-ALLENFYQPQGGQVLL 73
Query: 348 RG-------------TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD-L 393
G V+ V Q +F +++DNI +G K + H +
Sbjct: 74 DGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFI 133
Query: 394 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 453
L G TE+GE+G +SGGQKQRV++ARA+ N V I D+ SALDA Q +
Sbjct: 134 SELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE-SEQQVQQA 192
Query: 454 IRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 487
+ +T +++ ++L + + D+I+++ G +
Sbjct: 193 LYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 1e-23
Identities = 69/238 (28%), Positives = 126/238 (52%), Gaps = 21/238 (8%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+ V + +L G+ +P + + I+G +G+GKS++L + ++ ++G IL
Sbjct: 9 IEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 969 IDGFDIAKF---GLMDLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAH 1023
IDG DI + L ++RK +G++ Q LFS TV N+ P EH+ E
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVL 126
Query: 1024 LKDAIRRNSLGLDAQVSEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 1079
+K +GL A + + S G R+ ++L+RA+ ++L LDE T+ +D
Sbjct: 127 MK----LELVGLRG---AAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPI 179
Query: 1080 TDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
+ +I + IRE + T++++ H L++++ DR+ +L G+V+ TPEELL+++
Sbjct: 180 SAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASD 237
|
Length = 263 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 66/237 (27%), Positives = 124/237 (52%), Gaps = 22/237 (9%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
IK E+V Y L +SF I + V I+G G+GKS++ L +++ + G I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSP-VLFSG-TVRFNLDPFSEHSDADLWEALE-----R 1021
IDG I+K L ++RK +GII Q+P F G TV + D+ LE
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATV-----------EDDIAFGLENKKVPP 116
Query: 1022 AHLKDAIRRNS--LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 1079
+KD I + +G++ + + +N S GQ+Q ++++ L +I++ DE+T+ +D +
Sbjct: 117 KKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
Query: 1080 TDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1134
I+K + + + + T++ I H ++ I D++++ G+++ P+E+L+N+
Sbjct: 177 GKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233
|
Length = 271 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-23
Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 28/232 (12%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 344
I RN F++ K E P L NIN IP G VA+VG +G GK S I+ +L + +
Sbjct: 342 IEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGK-STIANLLTRFYDIDEGE 399
Query: 345 -------------AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 391
A +R VA V Q +FN T+ +NI + + +R + + + +
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQ-IEEAARMAY 458
Query: 392 DLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 448
+D + G T IGE GV +SGGQ+QR+++ARA+ +S + I D+ SALD
Sbjct: 459 AMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES--- 515
Query: 449 VFDRCIRGELS----GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
+R I+ L +T +++ ++L + + D I++V +G + E GT +L
Sbjct: 516 --ERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565
|
Length = 582 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.9 bits (250), Expect = 3e-23
Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 27/225 (12%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 982
L G+S + + V ++GR GAGK+++L T+ +V GRI+ DG DI +
Sbjct: 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76
Query: 983 RKILGIIPQSPVLFSG-TVRFNL------DPFSEHSDADLWEALER-AHLKDAIRRNSLG 1034
R + +P+ +F TV NL E + DL E E LK+ RRN
Sbjct: 77 RLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKE--RRNQR- 133
Query: 1035 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA--AVDVRTDALIQKTIREEF 1092
AG S G++Q+L+++RAL+ R K+L+LDE + A + + I + I+E
Sbjct: 134 -------AG-TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE--IFEAIKELR 183
Query: 1093 KSCTM--LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
K M L++ ++ DR +L++GR++ T ELL++
Sbjct: 184 KEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228
|
Length = 237 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 3e-23
Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 34/244 (13%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+ E++ Y P L +S +I P + V ++G +GAGKS++L L +VE G +L
Sbjct: 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 969 IDGFDIAKFGLMDLRKI----------LGIIPQSPVL---------FSGTVRFNLDPFSE 1009
IDG DI K LR++ +I + VL T R F +
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 1010 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 1069
ALER +GL + + + S GQ+Q ++++RAL+++ K+++
Sbjct: 120 EEKQRALAALER-----------VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILA 168
Query: 1070 DEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1126
DE A++D + + ++ + T+++ H+++ + DRI+ L GR++
Sbjct: 169 DEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228
Query: 1127 PEEL 1130
P EL
Sbjct: 229 PAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 5e-23
Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 21/231 (9%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ ++ Y+ P + LS + + G++G GAGK++ L L + G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLW-EALERAHLKD 1026
I+G+ I R+ LG PQ LF TVR EH L A + K
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALFDELTVR-------EH----LRFYARLKGLPKS 108
Query: 1027 AIRRNS------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1080
I+ LGL + ++ S G ++ LSL+ AL+ +L+LDE T+ +D +
Sbjct: 109 EIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 1081 DALIQKTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEEL 1130
I I E K ++++ H ++ CDRI ++ G++ +P+EL
Sbjct: 169 RRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 5e-23
Identities = 61/229 (26%), Positives = 102/229 (44%), Gaps = 27/229 (11%)
Query: 909 IKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
I+ +++ Y L G+S +I + V IVG +G+GKS++LN L + G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 967 ILIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSG-TVRFNLD-------PFSEHSDAD 1014
+ +DG DI+K +L +G + QS L T N++ +
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 1015 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1074
E LER L D + SE S GQ+Q ++++RAL KI++ DE T
Sbjct: 121 AEELLERVGLGDRLNHY-------PSE----LSGGQQQRVAIARALANDPKIILADEPTG 169
Query: 1075 AVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 1121
+D T + + +RE + T++++ H DRI+ L G++
Sbjct: 170 NLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 7e-23
Identities = 67/229 (29%), Positives = 110/229 (48%), Gaps = 17/229 (7%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
V++ +S + + VG++G GAGK++ + +V + G+IL+D DI K M R
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP-MHKR 76
Query: 984 KILGI--IPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 1040
LGI +PQ +F TV N+ E + DL +A + L + +
Sbjct: 77 ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALL--EEFHITHLRD 134
Query: 1041 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTM--L 1098
+ S G+R+ + ++RAL K ++LDE A VD IQ+ I+ K + L
Sbjct: 135 SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK-HLKDRGIGVL 193
Query: 1099 IIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE-------GSSFS 1139
I H + +D CDR ++ G+VL +PEE+++NE G +F
Sbjct: 194 ITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVYLGENFK 242
|
Length = 243 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 9e-23
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 40/238 (16%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV-----ELERGRILIDGFDIAKFG 978
+ G+SF + + +GIVG +G+GKS + + ++ + G IL DG D+
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78
Query: 979 LMDLRKILG----IIPQS------PVLFSGTVRFNL-DPFSEHSDADLW--------EAL 1019
+LRKI G +I Q PV+ T+ + + H E L
Sbjct: 79 EKELRKIRGKEIAMIFQDPMTSLNPVM---TIGDQIAEVLRLHGKGLSKKEAKERAIELL 135
Query: 1020 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 1079
E + D RR L + E S G RQ + ++ AL K+L+ DE T A+DV
Sbjct: 136 ELVGIPDPERR----LKSYPHE----LSGGMRQRVMIAMALALNPKLLIADEPTTALDVT 187
Query: 1080 TDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
A I K ++ E +++I H L + + DR+ ++ +GR++E EE+ N
Sbjct: 188 VQAQILDLLKELQREKG-TALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 1e-22
Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 17/232 (7%)
Query: 277 PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 336
PL SG I I N F++ + L NINL +P VA+VG TG GK++L S ++G
Sbjct: 335 PLQSG--RIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY 390
Query: 337 LP-----------PVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAI 384
P P+S S +V+R VA V Q + T N+ G + +A+
Sbjct: 391 YPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQAL 450
Query: 385 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 444
+ L LP G T +GE+G N+S GQKQ +++AR + + I D+ + +D+
Sbjct: 451 ETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510
Query: 445 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
Q + + T V++ ++L + + D I+++H G E+GT + L
Sbjct: 511 T-EQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQL 561
|
Length = 592 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-22
Identities = 83/329 (25%), Positives = 142/329 (43%), Gaps = 37/329 (11%)
Query: 782 YDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL--TATF-AVVQNGSAEN 838
+D + + + IR T +G WL++ L I+ + TF ++Q A
Sbjct: 275 FDAVLGNWRRLVRAQIRLTWFQLGYG-WLSVVLPILIAAPRYFSGQITFGGLMQAVGAFG 333
Query: 839 QEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNR 898
Q S++ + I +LRLA +L A + + + + +
Sbjct: 334 Q--VHSSLSWFIDNYDAIADWRATLLRLAEFR-QALEAAQM--DTEKPARTGRRIDFDDN 388
Query: 899 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 958
G I E++ LR P+ +L L+F + P +++ I G +GAGK+S+L L
Sbjct: 389 ADHG------ITLENLSLR-TPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG 441
Query: 959 IVELERGRILI-DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDAD 1014
+ GRI + + +PQ P L GT+R L + + SDA+
Sbjct: 442 LWPWGSGRISMPADSALL------------FLPQRPYLPQGTLREALCYPNAAPDFSDAE 489
Query: 1015 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1074
L L + L D R LD + S G++Q L+ +R LL + K + LDEAT+
Sbjct: 490 LVAVLHKVGLGDLAER----LD-EEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATS 544
Query: 1075 AVDVRTDALIQKTIREEFKSCTMLIIAHR 1103
A+D T+ + + ++EE T++ + HR
Sbjct: 545 ALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 2e-22
Identities = 65/247 (26%), Positives = 116/247 (46%), Gaps = 38/247 (15%)
Query: 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 967
I+ +++ Y P L ++ I + V I+G +GAGKS++L +L +V+ G I
Sbjct: 3 MIEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 968 LIDGFDIAKFGLMDLRKIL---GIIPQSP-----------VLFS-----GTVR--FNLDP 1006
L +G I K +LRK+ G+I Q VL T R F L
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGL-- 119
Query: 1007 FSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1066
FS+ A +ALER +G+ + + S GQ+Q ++++RAL+++ KI
Sbjct: 120 FSKEDKAQALDALER-----------VGILDKAYQRASTLSGGQQQRVAIARALVQQPKI 168
Query: 1067 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA--HRLNTIID-CDRILLLDSGRVLE 1123
++ DE A++D + + +++ + + +I H+++ DRI+ L +GR++
Sbjct: 169 ILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF 228
Query: 1124 YDTPEEL 1130
EL
Sbjct: 229 DGPASEL 235
|
Length = 258 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 2e-22
Identities = 56/246 (22%), Positives = 111/246 (45%), Gaps = 21/246 (8%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ D+ Y + +SF + G++G GAGK+++L + ++ + G++
Sbjct: 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 969 IDGFDIAKFGLMDLRKILGIIP-QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA 1027
IDG D + +R+ +G++ + + T R NL F+ + L R +K
Sbjct: 61 IDGVDTVRDP-SFVRRKIGVLFGERGLYARLTARENLKYFARLNG------LSRKEIKAR 113
Query: 1028 IRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1085
I L L + FS G +Q ++++RAL+ ILVLDE T+ +D+RT +
Sbjct: 114 IAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT----R 169
Query: 1086 KTIREEFKSC-----TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1139
+ + K ++ +H + + CDR+++L G V+ + E L +
Sbjct: 170 RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNL 229
Query: 1140 KMVQST 1145
+ + +
Sbjct: 230 EEIFAF 235
|
Length = 245 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 3e-22
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 41/210 (19%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP------VSDAS----AVIRGT 350
L +++L + G +A++G +G GKT+L+ + G P + R
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRN 73
Query: 351 VAYVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVT 402
+ V Q +F + TV +NI FG A AR + +++ L+ L+ P
Sbjct: 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHE--- 130
Query: 403 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--- 459
+SGGQ+QRV++ARA+ + + D+PLSALDA + + +R EL
Sbjct: 131 --------LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE-----LREELKELQ 177
Query: 460 ---GKTRVLVT-NQLHFLSQVDRIILVHEG 485
G T + VT +Q L+ DRI +++EG
Sbjct: 178 RELGITTIYVTHDQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-22
Identities = 81/248 (32%), Positives = 123/248 (49%), Gaps = 23/248 (9%)
Query: 276 PPLTSGLP-AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML 334
PPL A++ N F++D RP L I+ IP+G VAIVG +G GK S I +L
Sbjct: 253 PPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGK-STILRLL 309
Query: 335 GELPPVSDASAVI-------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 381
V+ S I R + VPQ + +FN T+ NI +G A E
Sbjct: 310 FRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGR--PDATAE 367
Query: 382 KAIDVTSLQHDLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 438
+ D LP G T +GERG+ +SGG+KQRV++AR + N + I D+
Sbjct: 368 EVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEAT 427
Query: 439 SALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 498
SALD H + + +R +G+T +++ ++L + D II++ G + E GT E+L
Sbjct: 428 SALDTHTEQAI-QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLA 486
Query: 499 NGELFQKL 506
G L+ ++
Sbjct: 487 AGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 4e-22
Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 49/225 (21%)
Query: 285 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---- 339
+ +RN ++ T L +I+L + G VA+VG +G GK++L+ + G P
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 340 VSDASAVIRGT---VAYVPQVS----WIFNATVRDNILFGSAFEP-------ARYEKAID 385
V + G YV Q W TV DN+ G + R E+ ++
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPW---LTVLDNVALGLELQGVPKAEARERAEELLE 117
Query: 386 VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHV 445
+ L + P +SGG +QRV++ARA+ + DV + D+P SALDA
Sbjct: 118 LVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALT 166
Query: 446 GRQVFDRCIRGEL------SGKTRVLVTNQLH---FLSQVDRIIL 481
Q ++ EL +GKT +LVT+ + FL+ DR+++
Sbjct: 167 REQ-----LQEELLDIWRETGKTVLLVTHDIDEAVFLA--DRVVV 204
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 5e-22
Identities = 54/225 (24%), Positives = 111/225 (49%), Gaps = 20/225 (8%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ + + Y L LS T+ P + + ++G +G GK+++L + + + G IL
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFS-----GTVRFNLDPFSEHSDADLWEALERAH 1023
IDG D+ G+ R+ +G++ Q LF + F L + +A RA
Sbjct: 59 IDGRDVT--GVPPERRNIGMVFQDYALFPHLTVAENIAFGLK------LRGVPKAEIRAR 110
Query: 1024 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1083
+++ + +GL+ ++ S GQ+Q ++L+RAL R +L+LDE +A+D +
Sbjct: 111 VRELLEL--VGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE 168
Query: 1084 IQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125
+++ ++E + T + + H + DRI +++ GR+++
Sbjct: 169 LREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 5e-22
Identities = 81/276 (29%), Positives = 139/276 (50%), Gaps = 33/276 (11%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+FE+V RY + ++ TI + + ++G +G+GK++ L + R++E G IL
Sbjct: 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFN------LDPFSEHSDADLWEALER 1021
IDG DI+ ++LR+ +G + Q LF TV N L + + A E
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKK--RADEL 117
Query: 1022 AHLKDAIRRNSLGLDAQVSEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVD 1077
L +GLD SE + + S GQ+Q + ++RAL IL++DE A+D
Sbjct: 118 LDL--------VGLDP--SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
Query: 1078 VRTDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
T +Q K +++E T++ + H ++ + DRI ++D+G +++YDTP+E+L+N
Sbjct: 168 PITRKQLQEEIKELQKELGK-TIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
Query: 1134 EGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREE 1169
+ F V+ + + LR L L A+ R E
Sbjct: 227 PANDF---VEDFFGESERGLRLLSLVSVADAVRRGE 259
|
Length = 309 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-22
Identities = 83/301 (27%), Positives = 138/301 (45%), Gaps = 65/301 (21%)
Query: 907 GSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
G I+ DV RY RP +P + L+F+ IVG TG+GKS++++ L R +L+
Sbjct: 1164 GKIEIMDVNFRYISRPNVP-IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKN 1222
Query: 965 GRILI--------------------------------------DGFDIAKF--------- 977
++ G D F
Sbjct: 1223 DHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLD 1282
Query: 978 -------GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD-ADLWEALERAHLKDAIR 1029
L DLR + I+ Q P+LF+ ++ N+ E + D+ A + A + + I
Sbjct: 1283 GVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIE 1342
Query: 1030 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 1089
D V G++ S GQ+Q ++++RALLR KIL+LDEAT+++D ++ LI+KTI
Sbjct: 1343 SLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402
Query: 1090 E--EFKSCTMLIIAHRLNTIIDCDRILLLDS-----GRVLEYDTPEELLSNEGSSFSKMV 1142
+ + T++ IAHR+ +I D+I++ ++ V + T EELLS + + K V
Sbjct: 1403 DIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYV 1462
Query: 1143 Q 1143
+
Sbjct: 1463 K 1463
|
Length = 1466 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 8e-22
Identities = 70/247 (28%), Positives = 115/247 (46%), Gaps = 50/247 (20%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---- 339
+ ++N S+ S L ++NLDI G V ++G +G GK++L+ + G P
Sbjct: 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 340 -------VSDASAVIRGTVAYVPQVSWIF-NATVRDNILFG--SAFEP-----ARYEKAI 384
V+D RG +A V Q ++ + TV +NI FG P R ++
Sbjct: 60 ILIDGRDVTDLPPEKRG-IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 385 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 444
+ L+H L+ P +SGGQ+QRV++ARA+ VF+ D+PLS LDA
Sbjct: 119 KLLGLEHLLNRKPLQ-----------LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 445 VGRQVFDRCIRGELS------GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 498
+ R + +R E+ G T + VT H QV+ + L +V +G + +
Sbjct: 168 L-RVL----MRSEIKKLHERLGTTTIYVT---H--DQVEAMTLADRIVVMNDGRIQQVGT 217
Query: 499 NGELFQK 505
EL+++
Sbjct: 218 PLELYER 224
|
Length = 338 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 8e-22
Identities = 67/245 (27%), Positives = 119/245 (48%), Gaps = 29/245 (11%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+FE+V RY ++ L+ I + + ++G +G+GK++ + + R++E G I
Sbjct: 1 IEFENVTKRY-GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFN--LDPFSEHSDADLWEALERAHLK 1025
IDG DI + ++LR+ +G + Q LF TV N L P W K
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK-----WP-------K 107
Query: 1026 DAIRRNSLGLDAQVSEAGENF--------SVGQRQLLSLSRALLRRSKILVLDEATAAVD 1077
+ IR + L A V F S GQ+Q + ++RAL +L++DE A+D
Sbjct: 108 EKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALD 167
Query: 1078 VRTDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
T +Q K +++E T++ + H ++ DRI ++ +G +++ TP+E+L +
Sbjct: 168 PITRDQLQEEFKRLQQELGK-TIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
Query: 1134 EGSSF 1138
+ F
Sbjct: 227 PANDF 231
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 9e-22
Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 24/240 (10%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 341
A+ + FS+D+ R + +++ + G VAIVG TG GK++LI+ + P S
Sbjct: 334 AVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR 391
Query: 342 ------DASAV----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 391
D V +R +A V Q + +FN ++ DNI G A E+
Sbjct: 392 ILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR--PDATDEEMRAAAERAQ 449
Query: 392 DLDLL---PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 448
D + P G T +GERG +SGG++QR+++ARA+ + + I D+ SALD +
Sbjct: 450 AHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAK 509
Query: 449 VFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 506
V + G+T ++ ++L + DRI++ G V E G+F++L G F L
Sbjct: 510 VKAALDELM---KGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAAL 566
|
Length = 588 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 1e-21
Identities = 74/246 (30%), Positives = 123/246 (50%), Gaps = 45/246 (18%)
Query: 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 342
P I +R S+ +R L ++LD+P G ++AI+GG+G GK++L+ +LG L P D
Sbjct: 7 PLIEVRGVTKSF---GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--D 61
Query: 343 ASAV-----------------IRGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAI 384
+ IR + + Q +F++ TV +N+ F P R +
Sbjct: 62 KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF-----PLREHTKL 116
Query: 385 DVTSLQHDLDLLPGGDVTEIGERGVN-------ISGGQKQRVSMARAVYSNSDVFIFDDP 437
SL +L L+ + +G RG +SGG ++RV++ARA+ + ++ D+P
Sbjct: 117 P-ESLIRELVLM---KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEP 172
Query: 438 LSALDAHVGRQVFDRCIRGELS---GKTRVLVTNQLH-FLSQVDRIILVHEGMVKEEGTF 493
S LD + V D IR EL+ G T ++VT+ L L+ DR+ ++ +G V EGT
Sbjct: 173 TSGLDP-ISAGVIDELIR-ELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230
Query: 494 EDLSNN 499
E+L +
Sbjct: 231 EELLAS 236
|
Length = 263 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 1e-21
Identities = 67/234 (28%), Positives = 114/234 (48%), Gaps = 41/234 (17%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 977
L ++ IP + ++G +G GKS++L +L R+ +L G++L DG DI K
Sbjct: 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75
Query: 978 GLMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALE 1020
+++LR+ +G++ Q P F ++ N LD E S A LW+ +
Sbjct: 76 DVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV- 134
Query: 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1080
KD + ++LGL S GQ+Q L ++RAL ++L+LDE T+A+D
Sbjct: 135 ----KDRLHDSALGL-----------SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIA 179
Query: 1081 DALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1133
I++ I+E K T++I+ H + DR G ++EY E++ +N
Sbjct: 180 TGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 2e-21
Identities = 51/218 (23%), Positives = 100/218 (45%), Gaps = 51/218 (23%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 339
+SI N FS+ + E+ L N++L++ G +A++G +G GK++L+ + G+L P
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 340 ------VSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDL 393
VSD + ++ + Q ++F+ T+R+N+
Sbjct: 60 TLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 394 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 453
G SGG++QR+++AR + ++ + + D+P LD RQ+
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SL 140
Query: 454 IRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 491
I L KT + +T+ L + +D+I+ + G + +G
Sbjct: 141 IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 2e-21
Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 43/219 (19%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP-- 355
L ++NLDI G V ++G +G GKT+ + M+ L + I G V +P
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLR-MIAGLEEPTSGRIYIGGRDVTDLPPK 70
Query: 356 --QVSWIF-------NATVRDNILFG--SAFEP-----ARYEKAIDVTSLQHDLDLLPGG 399
++ +F + TV DNI FG P R + ++ ++H LD P
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPK- 129
Query: 400 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 459
+SGGQ+QRV++ RA+ VF+ D+PLS LDA + Q +R EL
Sbjct: 130 ----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQ-----MRAELK 174
Query: 460 ------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEG 491
G T + VT +Q+ ++ DRI ++++G +++ G
Sbjct: 175 RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 3e-21
Identities = 62/233 (26%), Positives = 114/233 (48%), Gaps = 40/233 (17%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 977
L ++ IP + ++G +G GKS++L L R+ +L G +L+DG +I K
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 978 GLMDLRKILGIIPQSPVLFSGTVRFN--------------LDPFSEHS--DADLWEALER 1021
+++LR+ +G++ Q P F ++ N LD E S A LW+ +
Sbjct: 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEV-- 139
Query: 1022 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1081
KD + +++LGL S GQ+Q L ++RAL + ++L++DE T+A+D +
Sbjct: 140 ---KDRLHKSALGL-----------SGGQQQRLCIARALAVKPEVLLMDEPTSALDPIST 185
Query: 1082 ALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1133
I++ I E K T++I+ H + D G ++E+ +++ +N
Sbjct: 186 LKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 3e-21
Identities = 65/240 (27%), Positives = 120/240 (50%), Gaps = 20/240 (8%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+F++V Y +L +S IVG +GAGKS+++ + R+++ G IL
Sbjct: 4 IEFKEV--SYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD---PFSEHSDADLWEALERAHLK 1025
IDG DI ++DLR+ +G++ Q P LF GTV+ N++ + D+ L
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLS----- 116
Query: 1026 DAIRRNSLGLDAQVSEAG-ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1084
+GL+ + + +N S G+ Q +S++R L ++L+LDE T+A+D + +I
Sbjct: 117 ------IVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII 170
Query: 1085 QKTIRE--EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1141
++ I + + T++ I H + D L+ G ++EY + +N + +K+
Sbjct: 171 EELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKL 230
|
Length = 241 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 4e-21
Identities = 60/202 (29%), Positives = 101/202 (50%), Gaps = 27/202 (13%)
Query: 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA-------SAVIRGTVA 352
P L +++ ++ G +AIVG G GK++L+ A+LG L P S + R +
Sbjct: 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIG 71
Query: 353 YVPQ---VSWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 407
YVPQ + F +VRD +L G R D + L+ + ++E+ +R
Sbjct: 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV---GLSELADR 128
Query: 408 GV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRV 464
+ +SGGQ+QRV +ARA+ + D+ + D+P + +D ++ +R EL G T +
Sbjct: 129 QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK-TQEDIYELLR-ELRREGMTIL 186
Query: 465 LVTNQLHFLSQV----DRIILV 482
+VT H L V DR++L+
Sbjct: 187 VVT---HDLGLVLEYFDRVLLL 205
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 5e-21
Identities = 68/241 (28%), Positives = 124/241 (51%), Gaps = 27/241 (11%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+ +++ + + VL G+S ++ + V I+G +G+GKS++L L + E + G I
Sbjct: 3 IEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 969 IDGFDI-AKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLW-------EAL 1019
+DG D+ K ++ LR+ +G++ Q LF TV N+ + A + EA
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENV------TLAPVKVKKLSKAEAR 114
Query: 1020 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-- 1077
E+A + + + +GL + S GQ+Q ++++RAL K+++ DE T+A+D
Sbjct: 115 EKA--LELLEK--VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPE 170
Query: 1078 -VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEG 1135
V + K + EE TM+I+ H + + DR++ +D G+++E PEE N
Sbjct: 171 LVGEVLDVMKDLAEE--GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228
Query: 1136 S 1136
S
Sbjct: 229 S 229
|
Length = 240 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 6e-21
Identities = 70/235 (29%), Positives = 122/235 (51%), Gaps = 22/235 (9%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS---MLNTLFRIVELERG 965
I+ E + RY L +SF++ + V IVG G+GKS+ +LN L E G
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAG 62
Query: 966 RILIDGFDIAKFGLMDLRKILGIIPQSP-VLFSGT-----VRFNLDPFSEHSDADLWEAL 1019
I + G +++ + D+R+ +G++ Q+P F G V F L E+ E +
Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGL----ENIGVPREEMV 118
Query: 1020 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 1079
ER A+R+ +G++ ++ S GQ+Q ++++ L + I++LDEAT+ +D R
Sbjct: 119 ERVD--QALRQ--VGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
Query: 1080 TDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1132
+ +T+R+ E K T+L I H L+ DR+++++ G +LE TPEE+
Sbjct: 175 GRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 1e-20
Identities = 68/218 (31%), Positives = 116/218 (53%), Gaps = 33/218 (15%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVI--RGTVA 352
L ++NL++P GSLVA++G +G GK++L+ + G P S DA+ V +
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 353 YVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
+V Q +F + TVRDNI FG A AR E+ +++ L+ D P
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN------ 129
Query: 405 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV--FDRCIRGELSGKT 462
+SGGQ+QRV++ARA+ V + D+P ALDA V +++ + R + E+ T
Sbjct: 130 -----QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH-VT 183
Query: 463 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 499
V VT +Q + DRI+++ G +++ G+ +++ ++
Sbjct: 184 TVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 2e-20
Identities = 74/242 (30%), Positives = 111/242 (45%), Gaps = 34/242 (14%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR-IVELER--- 964
++ E++ RY V++G+S ++ + VG++G GAGK+ T F IV L +
Sbjct: 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKT----TTFYMIVGLVKPDS 54
Query: 965 GRILIDGFDIAKFGLMDLRKILGII--PQSPVLFSG-TVRFNLDPFSEHSDADLWEALER 1021
G+IL+DG DI K M R LGI PQ +F TV N+ LE
Sbjct: 55 GKILLDGQDITKLP-MHKRARLGIGYLPQEASIFRKLTVEENILA-----------VLEI 102
Query: 1022 AHLKDAIRRNSL-------GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1074
L R L + + S G+R+ + ++RAL K L+LDE A
Sbjct: 103 RGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFA 162
Query: 1075 AVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132
VD IQK I+ + + +LI H + + DR ++ G+VL TPEE+ +
Sbjct: 163 GVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
Query: 1133 NE 1134
NE
Sbjct: 223 NE 224
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 3e-20
Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 57/206 (27%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------------DA 343
++ L +++L+I G +VA++G +G GK++L+ + G P S D
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDE 70
Query: 344 SAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 402
+R + V Q +F + TV +NI G
Sbjct: 71 LPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------ 100
Query: 403 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSG 460
+SGGQ+QRV++ARA+ + DV + D+P SALD + R+ ++ G
Sbjct: 101 --------LSGGQQQRVALARALAMDPDVLLLDEPTSALDP-ITRREVRALLKSLQAQLG 151
Query: 461 KTRVLVTNQLHFLSQV-DRIILVHEG 485
T VLVT+ L +++ DR++++ +G
Sbjct: 152 ITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 4e-20
Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 46/201 (22%)
Query: 286 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA 345
I N F + R L N++L + G +VA+VG G GK++L+ A+ G L P S
Sbjct: 1 EIENLSFRYG---GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG-EI 56
Query: 346 VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 405
+I G ++ + +R I + V L
Sbjct: 57 LIDGK-----DIAKLPLEELRRRIGY--------------VPQL---------------- 81
Query: 406 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL 465
SGGQ+QRV++ARA+ N D+ + D+P S LD ++ + G+T ++
Sbjct: 82 ------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVII 135
Query: 466 VTNQLHFLSQV-DRIILVHEG 485
VT+ DR+I++ +G
Sbjct: 136 VTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 4e-20
Identities = 58/217 (26%), Positives = 103/217 (47%), Gaps = 22/217 (10%)
Query: 912 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 971
E++ Y+ + +L LS + + + + G+ GAGK+++ L +++ G IL++G
Sbjct: 3 ENISFSYK-KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 972 FDIAKFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEA---LERAHLKD 1026
I + RK +G + Q LF+ +VR L + DA +A L+ L
Sbjct: 62 KPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA 118
Query: 1027 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1086
R+ L L S GQ+Q L+++ ALL +L+ DE T+ +D + + +
Sbjct: 119 LKERHPLSL-----------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE 167
Query: 1087 TIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 1121
IRE +++I H + CDR+LLL +G +
Sbjct: 168 LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 5e-20
Identities = 61/235 (25%), Positives = 109/235 (46%), Gaps = 27/235 (11%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+FE+V Y P L +SF IP + V + G +GAGKS++L ++ RG+IL
Sbjct: 2 IRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 969 IDGFDIAKFGLMD---LRKILGIIPQSPVLFSG-----TVRFNLDPFSEHSDA---DLWE 1017
++G D+++ + LR+ +G++ Q L V L + + E
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE 120
Query: 1018 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1077
L+ LK R L +Q+S G++Q ++++RA++ + +L+ DE T +D
Sbjct: 121 VLDLVGLKHKARA----LPSQLSG-------GEQQRVAIARAIVNQPAVLLADEPTGNLD 169
Query: 1078 VRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCD-RILLLDSGRVLEYDTPEE 1129
I + EE T+L+ H L + R+L L+ GR++ ++
Sbjct: 170 PDLSWEIMRLF-EEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 88.2 bits (220), Expect = 6e-20
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 60/218 (27%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 339
I +RN + K L +I+L + G + ++G G GKT+LI +LG L P
Sbjct: 1 IEVRNLSKRYGKK---TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 340 ------VSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHD 392
+ ++ + Y+P+ ++ N TVR+N+
Sbjct: 58 KVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL--------------------- 96
Query: 393 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 452
SGG KQR+++A+A+ + ++ I D+P S LD R+ F
Sbjct: 97 -------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDP-ESRREFWE 136
Query: 453 CIRGELS--GKTRVLVTNQLHFLSQV-DRIILVHEGMV 487
+R EL GKT +L ++ L ++ DR+ +++ G +
Sbjct: 137 LLR-ELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 96.3 bits (239), Expect = 7e-20
Identities = 118/563 (20%), Positives = 230/563 (40%), Gaps = 85/563 (15%)
Query: 629 IYSLLSFG--QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINR 686
I+SL+ G Q +++ +S+ + + + K L L S+ F NP ++ +
Sbjct: 100 IFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSD 159
Query: 687 FAKDLGDIDRNVAV-FVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 745
L ++ + F+ +F S L ++ + I + L Y +
Sbjct: 160 LDFYLEQVNAGIGTKFITIFT-YASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICN 218
Query: 746 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 805
+ K+ + + + EAL G+ T+ +Y + S +Y L
Sbjct: 219 KKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYIL---K 275
Query: 806 ANRWLAIRLEIVGGLMI-------WLTATFAV--VQNGSAENQEAFASTMGLLLSYALNI 856
AN ++ + ++ G ++ W + + N N S + +LL +
Sbjct: 276 ANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGV---L 332
Query: 857 TSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVL 916
S+ + L ++ E + ++E + E+ + PLV E+N I+F++V
Sbjct: 333 ISMFMLTIILPNITE-YMKSLEATNSLYEIINRKPLV-ENNDDGKKLKDIKKIQFKNVRF 390
Query: 917 RY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI-DGFD 973
Y R ++ + L+FT+ VG +G GKS++L + R+ + G I+I D +
Sbjct: 391 HYDTRKDVE-IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHN 449
Query: 974 IAKFGLMDLRKILGIIPQSPVLFSGTVRFN----------LDPFSEHSDADLWEALERAH 1023
+ L R +G++ Q P+LFS +++ N L+ S + + D ++ E +
Sbjct: 450 LKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKN 509
Query: 1024 LKDAIRRNSLG------------------------------------------------L 1035
+++ R G
Sbjct: 510 KRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKY 569
Query: 1036 DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR--EEFK 1093
+ V S GQ+Q +S++RA++R KIL+LDEAT+++D +++ L+QKTI + +
Sbjct: 570 ETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNE 629
Query: 1094 SCTMLIIAHRLNTIIDCDRILLL 1116
+ +IIAHRL+TI + I +L
Sbjct: 630 NRITIIIAHRLSTIRYANTIFVL 652
|
Length = 1466 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 7e-20
Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 32/243 (13%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
+K E++ Y + L G++ I + I+G GAGKS++ L I++ GRIL
Sbjct: 6 LKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 969 IDG--FDIAKFGLMDLRKILGIIPQSP--VLFSGTVR-------FNLDPFSEHSDADLWE 1017
DG D ++ GLM LR+ +G++ Q P LFS +V NL + +
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDN 124
Query: 1018 ALER---AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1074
AL+R HLKD + S GQ++ ++++ L+ K+LVLDE TA
Sbjct: 125 ALKRTGIEHLKD--------------KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTA 170
Query: 1075 AVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEELL 1131
+D + I K + E K T++I H ++ + + CD + ++ GRV+ P+E+
Sbjct: 171 GLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
Query: 1132 SNE 1134
+ +
Sbjct: 231 AEK 233
|
Length = 283 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 66/235 (28%), Positives = 113/235 (48%), Gaps = 46/235 (19%)
Query: 295 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGT--- 350
D+ + L +++L +P G + I+G +G GK++LI + G E P + S ++ GT
Sbjct: 13 DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70
Query: 351 -------------VAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKA---------IDVT 387
+ + Q + ++ TV +N+ E A KA +++
Sbjct: 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL--PLEIAGVPKAEIEERVLELLELV 128
Query: 388 SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 447
L+ D P +SGGQKQRV +ARA+ +N V + D+ SALD +
Sbjct: 129 GLEDKADAYPA-----------QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177
Query: 448 QVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
+ R I EL G T VL+T+++ + ++ DR+ ++ +G V EEGT E++ N
Sbjct: 178 SILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 1e-19
Identities = 67/218 (30%), Positives = 109/218 (50%), Gaps = 17/218 (7%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-L 982
L G+S T+ P + ++G GAGKS+++ L + + G ILIDG +A D L
Sbjct: 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81
Query: 983 RKILGIIPQSPVLFSG-TVRFNL----DPFSEHSDADLWEALERAHLKDAIRRNSLGLDA 1037
+ + Q L +V N+ +P D +A+ R ++ + R LGLD
Sbjct: 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID-RKAMRRR-ARELLAR--LGLDI 137
Query: 1038 QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQKTIREEFKS-- 1094
+ S+ QRQ++ ++RAL +++L+LDE TAA+ V+ T+ L IR K+
Sbjct: 138 DPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF-DLIR-RLKAQG 195
Query: 1095 CTMLIIAHRLNTIID-CDRILLLDSGR-VLEYDTPEEL 1130
++ I+HRL+ + + DRI +L GR V T E
Sbjct: 196 VAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET 233
|
Length = 500 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 1e-19
Identities = 62/236 (26%), Positives = 98/236 (41%), Gaps = 56/236 (23%)
Query: 904 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 963
P + V + G+SF+I + +G+VG +G GKS++ + + E
Sbjct: 15 PVGKGFGKKRYV--------KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT 66
Query: 964 RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAH 1023
G IL +G DI K E + E LE+
Sbjct: 67 SGEILFEGKDITKLS-----------------------------KEERRERVLELLEKVG 97
Query: 1024 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA- 1082
L + L E S GQRQ + ++RAL K++V DE +A+DV A
Sbjct: 98 LPEEF------LYRYPHE----LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQ 147
Query: 1083 ---LIQKTIREEFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSN 1133
L++ ++EE T L I+H L+ + I DRI ++ G+++E EE+ SN
Sbjct: 148 ILNLLKD-LQEEL-GLTYLFISHDLSVVRYI-SDRIAVMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 1e-19
Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 47/241 (19%)
Query: 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELP--- 338
PA+ IRN S+ + +I+LDI G V ++G +G GKT+L+ + G E P
Sbjct: 4 PALEIRNVSKSFGDF---TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 339 -------PVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFG--------SAFEPARYEK 382
++D R + V Q +F + TV +N+ FG A AR E+
Sbjct: 61 EILLDGEDITDVPPEKRP-IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEE 119
Query: 383 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442
A+++ L+ D P +SGGQ+QRV++ARA+ V + D+PLSALD
Sbjct: 120 ALELVGLEGFADRKPH-----------QLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168
Query: 443 AHVGRQVFDRCIRGEL------SGKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFED 495
A + Q+ R EL G T V VT +Q L+ DRI ++++G +++ GT E+
Sbjct: 169 AKLREQM-----RKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEE 223
Query: 496 L 496
+
Sbjct: 224 I 224
|
Length = 352 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 1e-19
Identities = 78/250 (31%), Positives = 123/250 (49%), Gaps = 45/250 (18%)
Query: 909 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER- 964
I+ +++ + + L+ +S IP + G++G +GAGKS TL R + LER
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKS----TLIRCINLLERP 57
Query: 965 --GRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD---L 1015
GR+L+DG D+ +L R+I G+I Q FNL S + D L
Sbjct: 58 TSGRVLVDGQDLTALSEKELRKARRQI-GMIFQ---------HFNL--LSSRTVFDNVAL 105
Query: 1016 WEALERAHL-KDAIRR--NSL----GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 1068
LE A K I+ L GL + S GQ+Q ++++RAL K+L+
Sbjct: 106 --PLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL 163
Query: 1069 LDEATAAVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLE 1123
DEAT+A+D T I K I E T+++I H ++ + I CDR+ ++D+GR++E
Sbjct: 164 CDEATSALDPATTRSILELLKDINRELG-LTIVLITHEMDVVKRI-CDRVAVIDAGRLVE 221
Query: 1124 YDTPEELLSN 1133
T E+ S+
Sbjct: 222 QGTVSEVFSH 231
|
Length = 343 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.8 bits (220), Expect = 1e-19
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 11/181 (6%)
Query: 916 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 975
+ Y +L+ +S ++ + + I G +G GKS++L + ++ G +L +G D++
Sbjct: 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVS 68
Query: 976 KFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLG 1034
R+ + Q+P LF TV NL P+ + +RA D + R +L
Sbjct: 69 TLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNR-----RPDRAAALDLLARFALP 123
Query: 1035 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV----RTDALIQKTIRE 1090
D+ +++ S G++Q ++L R L KIL+LDE T+A+D + +I + +RE
Sbjct: 124 -DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVRE 182
Query: 1091 E 1091
+
Sbjct: 183 Q 183
|
Length = 223 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 2e-19
Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 30/230 (13%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASA 345
+ L ++L++ G +VA++G G GKT+L+ ++G + P S
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74
Query: 346 VIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
R +AYVP+ IF TV +N+L G+ + + D+ + +L P +
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEV---YELFP-----RL 126
Query: 405 GER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGEL 458
ER +SGG++Q +++ARA+ S + + D+P L + ++F+ + +R E
Sbjct: 127 KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE- 185
Query: 459 SGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 507
G T +LV F L DR ++ G + GT +L + ++ + +
Sbjct: 186 GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVREAYL 235
|
Length = 237 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.7 bits (222), Expect = 2e-19
Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 9/229 (3%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+ E+V Y P+ P L ++ I + +GI+G+ G+GKS++ L ++ ++G++L
Sbjct: 2 IRLENVSYSY-PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 969 IDGFDIAKFG-LMDLRKILGIIPQSP-VLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 1025
+ G D F L +RK++GI+ Q+P F G TV +L E+ E +R
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRA 120
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALI 1084
A +GL+ + + S GQ Q ++L+ L + L+ DE T+ +D + A++
Sbjct: 121 LA----EIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176
Query: 1085 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1133
++ + K T++ I H L + D DRI+++D G+++ PE +LS+
Sbjct: 177 ERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225
|
Length = 274 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 2e-19
Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 29/228 (12%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
+L G+S + P + + I+G GAGKS++L L + + G + ++G + + +L +
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 985 ILGIIPQSPVL-FSGT----VRFNLDPFSEHSDAD-----LWEALERAHLKDAIRRNSLG 1034
++PQ+ L F T V+ P + + +AL L R+
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRT 135
Query: 1035 LDAQVSEAGENFSVGQRQLLSLSRALLRRS------KILVLDEATAAVDVRTDALIQKTI 1088
L S G++Q + L+R L + + L LDE T+A+D+ +
Sbjct: 136 L-----------SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 1089 REEFKS-CTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNE 1134
R+ + +L + H LN DRI+LL GRV+ +P+++L++E
Sbjct: 185 RQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDE 232
|
Length = 259 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 44/209 (21%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------DASAVIRGT 350
L +INL + G VAI+G +G GK++L+ + G P S
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD 73
Query: 351 VAYVPQ----VSWIFNATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGG 399
+ YV Q + W TV DN+ G A R ++ +++ L D P
Sbjct: 74 IGYVFQEDALLPW---LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH- 129
Query: 400 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA----HVGRQVFDRCIR 455
+SGG +QRV++ARA+ + + + D+P ALDA + ++ +
Sbjct: 130 ----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLR--LW 177
Query: 456 GELSGKTRVLVTNQLH---FLSQVDRIIL 481
E KT +LVT+ + +L+ DR+++
Sbjct: 178 EET-RKTVLLVTHDVDEAVYLA--DRVVV 203
|
Length = 248 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-19
Identities = 69/220 (31%), Positives = 115/220 (52%), Gaps = 29/220 (13%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPP----------VSDASAVIRG 349
L +++LDIP G LVA++G +G GKT+L+ + G E P +D R
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75
Query: 350 TVAYVPQVSWIF-NATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 403
V +V Q +F + TV DN+ FG + P E V L L L+ +
Sbjct: 76 -VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHEL---LKLV---QLDW 128
Query: 404 IGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV--FDRCIRGELSG 460
+ +R +SGGQ+QRV++ARA+ V + D+P ALDA V +++ + R + EL
Sbjct: 129 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL-H 187
Query: 461 KTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 499
T V VT +Q L DR++++++G +++ GT +++ ++
Sbjct: 188 VTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 2e-19
Identities = 59/219 (26%), Positives = 108/219 (49%), Gaps = 35/219 (15%)
Query: 297 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG---------------ELPPVS 341
+ L ++NL+I G VAIVG +G GK++L++ +LG +L +S
Sbjct: 15 GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLTKLS 73
Query: 342 DA--SAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAF---EPARYEKAIDVTSLQHDL-D 394
+ + + R + +V Q + + + TV +N+ R ++A + L D
Sbjct: 74 EKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLED 133
Query: 395 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 454
L +E+ SGGQ+QRV++ARA+ +N + + D+P LD+ ++V + +
Sbjct: 134 RLLKKKPSEL-------SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE--L 184
Query: 455 RGELS---GKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 490
EL+ GKT ++VT+ DR+I + +G ++EE
Sbjct: 185 LRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 2e-19
Identities = 57/231 (24%), Positives = 110/231 (47%), Gaps = 36/231 (15%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+ +++ + VL G+ T+ + V I+G +G+GKS++L + + E + G I+
Sbjct: 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 969 IDGFDI--AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDA------------- 1013
IDG + K + +LR+ +G++ Q FNL P H
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQ---------FNLFP---HLTVLENITLAPIKVKG 106
Query: 1014 -DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 1072
EA ERA + + + +GL + S GQ+Q ++++RAL K+++ DE
Sbjct: 107 MSKAEAEERAL--ELLEK--VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEP 162
Query: 1073 TAAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 1121
T+A+D + +++ + TM+++ H + + DR++ +D GR+
Sbjct: 163 TSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 87.5 bits (218), Expect = 3e-19
Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 45/231 (19%)
Query: 285 ISIRNGYFSWDSKAER-PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 341
I ++N ++ E+ L ++L I G VAIVG +G GK++L++ + G P S
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 342 -------------DASAVIRG-TVAYVPQVSWIFN----ATVRDNILFGSAFEP------ 377
A R + +V Q FN T +N+
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQS---FNLLPDLTALENVELPLLLAGVPKKER 117
Query: 378 -ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 436
R E+ ++ L L+ P +SGGQ+QRV++ARA+ ++ + + D+
Sbjct: 118 RERAEELLERVGLGDRLNHYPS-----------ELSGGQQQRVAIARALANDPKIILADE 166
Query: 437 PLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQVDRIILVHEG 485
P LD+ G++V + +R + +G T V+VT+ DRII + +G
Sbjct: 167 PTGNLDSETGKEVME-LLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-19
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 40/209 (19%)
Query: 302 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---------DASAVIRGTVA 352
L +++LD+ G ++A+ G G GKT+L + G + S + R ++
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG 74
Query: 353 YVPQVS--WIFNATVRDNILFGSAFEPARYEKAIDVTSL--------QHDLDLLPGGDVT 402
YV Q +F +VR+ +L G A E+A V +H L L
Sbjct: 75 YVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSL------- 127
Query: 403 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--G 460
SGGQKQR+++A A+ S D+ IFD+P S LD +V + + EL+ G
Sbjct: 128 ---------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE--LIRELAAQG 176
Query: 461 KTRVLVTNQLHFLSQV-DRIILVHEGMVK 488
K +++T+ FL++V DR++L+ G +
Sbjct: 177 KAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 3e-19
Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 24/214 (11%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 982
L ++ I + V IVG +G+GKS++LN L + + G +LI+G D+ K +L
Sbjct: 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78
Query: 983 ---RKILGIIPQS-PVLFSGTVRFNLD-PF------SEHSDADLWEALERAHLKDAIRRN 1031
RK +G + Q+ +L TV N++ P + E LE L+D + +
Sbjct: 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKK 138
Query: 1032 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 1091
SE S GQ+Q ++++RAL+ KI++ DE T +D +T + + +RE
Sbjct: 139 K------PSEL----SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLREL 188
Query: 1092 FKS--CTMLIIAHRLNTIIDCDRILLLDSGRVLE 1123
K T++++ H DR++ L G++ E
Sbjct: 189 NKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 5e-19
Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 33/223 (14%)
Query: 917 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 976
+ L +SF I ++VGI+G GAGKS++L + I + G++ + G +A
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-KVA- 91
Query: 977 FGLMDLRKILGIIPQSPVLFSG--TVRFN---LDPFSEHSDADLWEALERAHLKDAIRRN 1031
L++L G P+ +G + L + D + E +E A L D I
Sbjct: 92 -PLIELG--AGFDPE----LTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI--- 141
Query: 1032 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR-- 1089
D V + +S G L+ S A IL+LDE A D A +K +
Sbjct: 142 ----DQPV----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA---AFQEKCLERL 190
Query: 1090 EEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1129
E K+ T+++++H L I CDR + L+ G++ +PEE
Sbjct: 191 NELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEE 233
|
Length = 249 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 5e-19
Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 20/221 (9%)
Query: 930 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKI 985
I + I+G +G+GKS+ + L R++E G+I IDG +I K ++L RK
Sbjct: 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKK 72
Query: 986 LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 1044
+G++ Q LF T+ N E E E+A + ++ +GL+ +
Sbjct: 73 IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKA--LELLKL--VGLEEYEHRYPD 128
Query: 1045 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------TML 1098
S G +Q + L+RAL IL++DEA +A+ D LI+ ++++E K T++
Sbjct: 129 ELSGGMQQRVGLARALAAEPDILLMDEAFSAL----DPLIRDSMQDELKKLQATLQKTIV 184
Query: 1099 IIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSF 1138
I H L+ I DRI+++ +G +++ TP+E+L N + +
Sbjct: 185 FITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 86.7 bits (216), Expect = 6e-19
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 34/221 (15%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVI 347
L ++L +P G +VA++G G GKT+L+ ++G LPP S
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERA 73
Query: 348 RGTVAYVPQVSWIF-NATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 405
R + YVP+ IF TV +N+L G A A+ + ++ +L P +
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLE-----RVYELFP-----RLK 123
Query: 406 ER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELS 459
ER +SGG++Q +++ARA+ S + + D+P L + ++F+ R +R E
Sbjct: 124 ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-- 181
Query: 460 GKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNN 499
G T +LV F L DR ++ G V EGT +L +
Sbjct: 182 GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 6e-19
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--FRIVELERGRILIDGFDIAKFGLMD 981
+L +S P + I+G +GAGKS++LN L R G +LI+G + K
Sbjct: 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR---S 79
Query: 982 LRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 1040
RKI+G +PQ +L TVR L F+ A L+ GL
Sbjct: 80 FRKIIGYVPQDDILHPTLTVRETLM-FA-------------AKLR--------GL----- 112
Query: 1041 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-CTMLI 1099
S G+R+ +S++ L+ +L LDE T+ +D + + +R + T++
Sbjct: 113 ------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIIC 166
Query: 1100 IAHRLNTII--DCDRILLLDSGRVL 1122
H+ ++ I D++LLL GRV+
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 6e-19
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 12/213 (5%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
L +SFT+ P V ++G GAGKS++ + L R+ + G+I + G D+ + L
Sbjct: 15 RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA 74
Query: 984 KILGIIPQSPVL-FSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS--LGLDAQVS 1040
++ G++ Q P L +VR NL A L L RA + I LGL +
Sbjct: 75 RL-GVVFQQPTLDLDLSVRQNL-----RYHAAL-HGLSRAEARARIAELLARLGLAERAD 127
Query: 1041 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTML 1098
+ + G R+ + ++RALL R +L+LDE T +D + A I +R + ++L
Sbjct: 128 DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVL 187
Query: 1099 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELL 1131
H ++ I DR+++L GRVL EL
Sbjct: 188 WATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 8e-19
Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 8/218 (3%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
+ G++F + + G +G GAGK++ + L ++ G + G+D+ + +R
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVR 65
Query: 984 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEA 1042
+ +GI+PQ + T R NL+ EA ERA ++ + LG A
Sbjct: 66 RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERA--EELLELFELGEAAD--RP 121
Query: 1043 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-CTMLIIA 1101
+S G R+ L ++ +L+ + +L LDE T +D RT I IR + T+L+
Sbjct: 122 VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTT 181
Query: 1102 HRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
H + CDRI ++D GR++ TPEEL G
Sbjct: 182 HYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDT 219
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 9e-19
Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 44/225 (19%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT------------ 350
L I+L + G +V I+G +G GK++L+ + G L S + G
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDVGDKKDILKLR 76
Query: 351 --VAYVPQVSWIFNA----TVRDNILF------GSAFEPARYEKAIDVTS---LQHDLDL 395
V V Q FN TV +N+ + AR EKA+++ L D
Sbjct: 77 RKVGMVFQQ---FNLFPHLTVLENVTLAPVKVKKLSKAEAR-EKALELLEKVGLADKADA 132
Query: 396 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 455
P +SGGQ+QRV++ARA+ + V +FD+P SALD + +V D
Sbjct: 133 YPA-----------QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181
Query: 456 GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
G T ++VT+++ F +V DR+I + +G + EEG E+ +N
Sbjct: 182 LAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 1e-18
Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 62/224 (27%)
Query: 286 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA-- 343
+ N + R L +++L I G +V I+G G GK++L+ + G L P S
Sbjct: 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 344 ----------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDL 393
+ +AYVPQ L
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQA-----------------------------------L 82
Query: 394 DLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 452
+LL + + +R N +SGG++QRV +ARA+ + + D+P S LD ++ +
Sbjct: 83 ELL---GLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 453 CIR-GELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEG 491
R GKT V+V LH L+ DR+IL+ +G + +G
Sbjct: 140 LRRLARERGKTVVMV---LHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 1e-18
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 14/129 (10%)
Query: 950 SSMLNTLFRIVELERGRILIDGFDIAKFG-LMDLRKILGIIPQSPVLF-SGTVRFNLDP- 1006
S++L + +++ G IL+DG D LRK +G++ Q P LF TVR NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1007 -FSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1065
+ +DA EALER L D + R +G S GQ+Q ++++RALL++ K
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 1066 ILVLDEATA 1074
+L+LDE TA
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 65/219 (29%), Positives = 114/219 (52%), Gaps = 12/219 (5%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
L +S + D I+G TG+GKS +L T+ ++ + G+IL++G DI L ++
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKR 71
Query: 985 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043
+ +PQ+ LF TV N+ + D E + I LG+D ++
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVL---EIAE-MLGIDHLLNRKP 127
Query: 1044 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALIQ--KTIREEFKSCTMLII 1100
E S G++Q ++++RAL+ KIL+LDE +A+DVRT + L + K IR+EF T+L +
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV-TVLHV 186
Query: 1101 AHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
H D++ ++ +G++++ PEE+ + F
Sbjct: 187 THDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEF 225
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 2e-18
Identities = 67/257 (26%), Positives = 121/257 (47%), Gaps = 30/257 (11%)
Query: 904 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS---MLNTLFRIV 960
++F+ V Y P L+ +SF+IP ++G G+GKS+ ++N L
Sbjct: 1 MKDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60
Query: 961 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSP------VLFSGTVRFNLDPFSEHSDAD 1014
+ +I +DG + + D+R+ +GI+ Q+P V F L+
Sbjct: 61 DNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLEN-------- 112
Query: 1015 LWEALERAHLKDAIRR--NSLG-LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1071
A+ R + +R +G LD SE N S GQ+Q ++++ L KI++LDE
Sbjct: 113 --RAVPRPEMIKIVRDVLADVGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDE 169
Query: 1072 ATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEE 1129
+T+ +D I K IR+ + + T++ I H ++ D++L+LD G++L +P E
Sbjct: 170 STSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVE 229
Query: 1130 LLSNEGSSFSKMVQSTG 1146
+ S +M++ G
Sbjct: 230 IFSKV-----EMLKEIG 241
|
Length = 282 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 3e-18
Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 45/237 (18%)
Query: 909 IKFEDVVLRYRPELPP--VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
++ +V Y L +S ++ + V +VG +G GKS++L + + G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 967 ILIDGFDIAKFGLMDLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDADLWE---- 1017
+L+DG + G + Q L V L+ A+ E
Sbjct: 61 VLVDGEPVT-----GPGPDRGYVFQQDALLPWLTVLDNVALGLE-LQGVPKAEARERAEE 114
Query: 1018 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1077
LE L Q+S G G RQ ++L+RAL +L+LDE +A+D
Sbjct: 115 LLELVGLSGFENA----YPHQLS--G-----GMRQRVALARALAVDPDVLLLDEPFSALD 163
Query: 1078 VRTDALIQ----KTIREEFKSCTMLIIAHRLNTIID-----CDRILLLDS--GRVLE 1123
T +Q RE K T+L++ H ID DR+++L + GR++
Sbjct: 164 ALTREQLQEELLDIWRETGK--TVLLVTHD----IDEAVFLADRVVVLSARPGRIVA 214
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 3e-18
Identities = 64/233 (27%), Positives = 113/233 (48%), Gaps = 41/233 (17%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKFG 978
L ++ I + ++G +G GKS+ L TL R+ +L G +L+DG DI +
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 979 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 1021
+ LRK +G++ Q P F ++ N LD E S A LW+
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD---- 134
Query: 1022 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1081
+KD +++++LGL S GQ+Q L ++RAL ++L++DE T+A+D +
Sbjct: 135 -EVKDRLKKSALGL-----------SGGQQQRLCIARALAVEPEVLLMDEPTSALDPIST 182
Query: 1082 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
I++ I+E K T++I+ H + D+ +G ++E+ +L +N
Sbjct: 183 LKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235
|
Length = 250 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 3e-18
Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 29/209 (13%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
L +SF +P +++G++GR GAGKS++L L I + G + + G + GL
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG---- 92
Query: 985 ILGIIPQSPVLFSGT--VRFNLDPFSEHSDADLWEALER----AHLKDAIRRNSLGLDAQ 1038
G P+ +G + N S ++ E ++ + L D I D
Sbjct: 93 -GGFNPE----LTGRENIYLNGR-LLGLSRKEIDEKIDEIIEFSELGDFI-------DLP 139
Query: 1039 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 1098
V +S G + L+ + A IL++DE A D Q+ +RE K +
Sbjct: 140 VK----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTV 195
Query: 1099 IIA-HRLNTIID-CDRILLLDSGRVLEYD 1125
I+ H ++I CDR L+L+ G++
Sbjct: 196 ILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 3e-18
Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 24/223 (10%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ E++ RY + L G+S T+ P G++G GAGK++++ L + G I
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPF-------SEHSDADLWEALE 1020
IDG D+ K LR+ +G +PQ ++ TVR LD S+ A + E LE
Sbjct: 58 IDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE 116
Query: 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1080
+L D ++ S G R+ + +++AL+ IL++DE TA +D
Sbjct: 117 LVNLGDR-------AKKKIGS----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 1081 DALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL 1122
+ + E + +++ H + + C+++ +L+ G+++
Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-18
Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 18/234 (7%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
+ +DV Y LP + T+P + V I+G +GAGKS++LN + G IL
Sbjct: 2 LALDDVRFSYG-HLP--MR-FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEIL 57
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 1027
I+G D + + ++ Q LF+ TV N+ L A +R ++ A
Sbjct: 58 INGVDHT--ASPPAERPVSMLFQENNLFAHLTVAQNIG-LGLSPGLKL-NAEQREKVEAA 113
Query: 1028 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTD--AL 1083
+ +GL + S GQRQ ++L+R L+R IL+LDE +A+D +R + AL
Sbjct: 114 AAQ--VGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLAL 171
Query: 1084 IQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1136
+ + E + T+L++ H DR++ LD+GR+ + +ELLS + S
Sbjct: 172 VSQLCDE--RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223
|
Length = 231 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 6e-18
Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 34/231 (14%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
+L +S T+ P + V I+G GAGKS++L L + + G + ++G +A + +L
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75
Query: 984 KILGIIPQSPVL-FSGTVR----FNLDPFSEHSDAD---LWEALER---AHLKDAIRRNS 1032
+ ++PQ L F TV P D + AL + AHL R+
Sbjct: 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG---RDY 132
Query: 1033 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRS------KILVLDEATAAVDVRTDALIQK 1086
L S G++Q + L+R L + + L+LDE T+A+D+ + +
Sbjct: 133 PQL-----------SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR 181
Query: 1087 TIREEFKS--CTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNE 1134
R+ ++++ H LN DRI+LL GR++ TP E+L+ E
Sbjct: 182 LARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPE 232
|
Length = 258 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 6e-18
Identities = 54/219 (24%), Positives = 108/219 (49%), Gaps = 11/219 (5%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+F +V Y P L G++ +I + V +VG +GAGKS++L +++ G I
Sbjct: 1 IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 969 IDGFDIAKF---GLMDLRKILGIIPQ-SPVLFSGTVRFNLDPFSEHSDADLWEALERAHL 1024
++G D++ + LR+ +G++ Q +L V N+ E + E +R +
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKR--V 117
Query: 1025 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1084
A+ +GL + S G++Q ++++RA++ IL+ DE T +D T I
Sbjct: 118 PAALEL--VGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEI 175
Query: 1085 QKTIREEFKSCTMLIIAHRLNTIIDC--DRILLLDSGRV 1121
+++ K+ T +++A ++D R++ L+ G++
Sbjct: 176 MNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 6e-18
Identities = 66/218 (30%), Positives = 115/218 (52%), Gaps = 10/218 (4%)
Query: 930 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI---- 985
S I + I+G +G+GKS+M+ L R++E RG++LIDG DIAK +LR++
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 986 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1045
+ ++ QS L + F A + R DA+R+ +GL+ +
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMEL-AGINAEERREKALDALRQ--VGLENYAHSYPDE 164
Query: 1046 FSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTDALIQKTIREEFKSCTMLIIAHR 1103
S G RQ + L+RAL IL++DEA +A+D +RT+ + + T++ I+H
Sbjct: 165 LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
Query: 1104 LNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140
L+ + DRI ++ +G V++ TP+E+L+N + + +
Sbjct: 225 LDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 9e-18
Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 61/217 (28%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ + R+ L G+S ++ + ++G GAGKS+++ L + + + G IL
Sbjct: 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 1028
+DG V F+ +DA
Sbjct: 59 VDG--------------------KEVSFASP-------------------------RDA- 72
Query: 1029 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQKT 1087
RR + + Q+S VG+RQ++ ++RAL R +++L+LDE TAA+ + L K
Sbjct: 73 RRAGIAMVYQLS-------VGERQMVEIARALARNARLLILDEPTAALTPAEVERLF-KV 124
Query: 1088 IREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRV 1121
IR ++ ++ I+HRL+ + + DR+ +L GRV
Sbjct: 125 IR-RLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 1e-17
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 47/220 (21%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDASAVIRGT 350
+++ I G + +VG +G GK++L A+LG +L +S IR
Sbjct: 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRK 82
Query: 351 -VAYVPQVSWIFNA-----TVRDNILFG----------SAFEPARYEKAIDVTSLQHDLD 394
+ V Q ++ T+ + I A + A + V + L+
Sbjct: 83 EIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLN 140
Query: 395 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--R 452
P +SGGQ+QRV++ARA+ N + I D+P SALD V Q+ D +
Sbjct: 141 RYPHE-----------LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLK 189
Query: 453 CIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 491
++ EL G T + +T+ L ++++ DR+ +++ G + EEG
Sbjct: 190 KLQEEL-GLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 2e-17
Identities = 68/280 (24%), Positives = 116/280 (41%), Gaps = 49/280 (17%)
Query: 257 SLKRMEEFLLAEEKILLPNPPLTSGLPAISIRN------GYFSWDSKAERPTLL--NINL 308
L L E+ I LP P +S+RN + +++
Sbjct: 253 GLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSF 312
Query: 309 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVIRGTVAYVPQVSWI 360
D+ G + +VG +G GK++L + G LPP S D ++ +
Sbjct: 313 DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMV 372
Query: 361 F---------NATVRDNI--------LFGSAFEPARYEKAIDVTSLQHD-LDLLPGGDVT 402
F TV D + A AR + +++ L + LD P
Sbjct: 373 FQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE--- 429
Query: 403 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSG 460
+SGGQ+QRV++ARA+ + I D+P+SALD V QV + + ++ EL G
Sbjct: 430 --------LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-G 480
Query: 461 KTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
T + +++ L + + DR+ ++++G + EEG E + N
Sbjct: 481 LTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (206), Expect = 2e-17
Identities = 57/227 (25%), Positives = 119/227 (52%), Gaps = 13/227 (5%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF------DIAKFG 978
+L ++ IP + GI+G +G+GKS++L L R++E+ +I +DG DI +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 979 LMDLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLGLD 1036
+ LRK +G++ Q P F ++ N+ P H + E + +++ +R+ L +
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREI--KKIVEECLRKVGLWKE 142
Query: 1037 A--QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1094
+++ S GQ+Q L+++RAL + K+L++DE T+ +D+ I+K I E
Sbjct: 143 VYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE 202
Query: 1095 CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140
++I++H + D + L +G ++E+ + E+ ++ + ++
Sbjct: 203 IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
Length = 257 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-17
Identities = 66/210 (31%), Positives = 105/210 (50%), Gaps = 20/210 (9%)
Query: 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----------DAS--AV 346
L +I+LDI G LVA++G +G GK++L+ + G P + D S AV
Sbjct: 15 FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAV 74
Query: 347 IRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 405
V +V Q + + TV DNI FG R +A ++ L L+ + +
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY 134
Query: 406 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSGKTR 463
+SGGQ+QRV++ARA+ V + D+P ALDA V R+ R +R + G T
Sbjct: 135 PA--QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV-RKELRRWLRKLHDRLGVTT 191
Query: 464 VLVT-NQLHFLSQVDRIILVHEGMVKEEGT 492
V VT +Q L DR++++++G +++ G
Sbjct: 192 VFVTHDQEEALELADRVVVLNQGRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 2e-17
Identities = 57/225 (25%), Positives = 105/225 (46%), Gaps = 39/225 (17%)
Query: 304 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVI----- 347
L+ + +P + AI G +G GKT+LI + G P + D+ I
Sbjct: 14 LDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPE 73
Query: 348 RGTVAYVPQVSWIF-NATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLLPGGDV 401
+ + YV Q + +F + +VR N+ +G + +E+ I++ + H L LPG
Sbjct: 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPG--- 130
Query: 402 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 461
+SGG+KQRV++ RA+ S+ + + D+PL+ALD ++ R L +
Sbjct: 131 --------RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER--LHAE 180
Query: 462 TRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGEL 502
+ + H L +V DR++++ +G V G ++ + +L
Sbjct: 181 FGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 23/208 (11%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
VL +S + + G +G GAGK++ + + +++ + G I DG K ++
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEAL 71
Query: 984 KILGIIPQSPVLFSG-TVRFNLDPFS-----EHSDADLWEALERAHLKDAIRRNSLGLDA 1037
+ +G + ++P + T R NL + D E L+ LKD+ ++
Sbjct: 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRID--EVLDVVGLKDSAKK------- 122
Query: 1038 QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-CT 1096
+V FS+G +Q L ++ ALL +L+LDE T +D +++ I T
Sbjct: 123 KVK----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 1097 MLIIAHRLNTI-IDCDRILLLDSGRVLE 1123
+LI +H L+ I DRI +++ G+++E
Sbjct: 179 VLISSHLLSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 3e-17
Identities = 58/209 (27%), Positives = 106/209 (50%), Gaps = 13/209 (6%)
Query: 928 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987
G+SF + + G++G GAGK++ + L +++ GR + G D+ + ++R+ +G
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIG 76
Query: 988 IIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSLGLDAQVSEAGE 1044
I+ Q + T NL A L+ + A ++ I + +GL +
Sbjct: 77 IVFQDLSVDDELTGWENLYIH-----ARLY-GVPGAERRERIDELLDFVGLLEAADRLVK 130
Query: 1045 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAH 1102
+S G R+ L ++R+L+ R ++L LDE T +D +T A + + I + E T+L+ H
Sbjct: 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190
Query: 1103 RLNTIID-CDRILLLDSGRVLEYDTPEEL 1130
+ CDR+ ++D GR++ TPEEL
Sbjct: 191 YMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 3e-17
Identities = 68/241 (28%), Positives = 127/241 (52%), Gaps = 22/241 (9%)
Query: 908 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
SIK E++ Y P L ++ I + VG++G TG+GKS+++ L +++
Sbjct: 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61
Query: 965 GRILIDGFDIA--KFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALE 1020
G+I+IDG DI K L D+RK +G++ Q P LF T+ ++ +L L
Sbjct: 62 GKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDI----AFGPINL--GLS 115
Query: 1021 RAHLKDAIRR--NSLGLDAQVSEAGENF--SVGQRQLLSLSRALLRRSKILVLDEATAAV 1076
+++ ++R N +GLD + + F S GQ++ ++++ + KIL+LDE TA +
Sbjct: 116 EEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGL 175
Query: 1077 D--VRTDALIQ-KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132
D R + L + K + +E+ T+++++H + + DRI++++ G+ TP E+
Sbjct: 176 DPKGRDEILNKIKELHKEYNM-TIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234
Query: 1133 N 1133
Sbjct: 235 E 235
|
Length = 287 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 4e-17
Identities = 58/234 (24%), Positives = 111/234 (47%), Gaps = 16/234 (6%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I F++V +Y+ + L +SF IP IVG G+GKS++ + I +++ G I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPV-LFSGT-----VRFNLDPFSEHSDADLWEALERA 1022
+ I LRK +GI+ Q+P F G+ V F L+ + D ++ + A
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYD-EMHRRVSEA 126
Query: 1023 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1082
LK + + + S GQ+Q ++++ L +++LDEAT+ +D
Sbjct: 127 -LKQ------VDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ 179
Query: 1083 LIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1134
+ +R+ + T++ I H L+ ++ D +++++ G V + TP E+ +
Sbjct: 180 NLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
|
Length = 269 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 4e-17
Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 48/214 (22%)
Query: 304 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGT------------ 350
L I+ D+ + I G +G GK++L+ + G E P + V+ GT
Sbjct: 15 LKIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDG--GTIVLNGTVLFDSRKKINLP 71
Query: 351 -----VAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
+ V Q +F + VR+N+ FG + E I V L LDLL + +
Sbjct: 72 PQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-RNREDRISVDEL---LDLL---GLDHL 124
Query: 405 GERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS---- 459
R +SGG+KQRV++ARA+ + ++ + D+P SALD + Q + EL
Sbjct: 125 LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQ-----LLPELKQIKK 179
Query: 460 --GKTRVLVTNQLHFLSQV----DRIILVHEGMV 487
+ VT H LS+ DRI+++ +G +
Sbjct: 180 NLNIPVIFVT---HDLSEAEYLADRIVVMEDGRL 210
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 41/228 (17%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ E V + VL ++ ++ + V I+G +G GKS++L + + + G +L
Sbjct: 4 LEIEGVSKSFGGV--EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNL-------DPFSEHSDADLWEALE 1020
+DG + G I G + Q L TV N+ + E LE
Sbjct: 62 LDGRPVTGPG----PDI-GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE 116
Query: 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1080
L D + S G RQ ++++RAL R K+L+LDE A+D T
Sbjct: 117 LVGLAGF-------EDKYPHQ----LSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165
Query: 1081 DALIQK---TIREEFKSCTMLIIAH------RLNTIIDCDRILLLDSG 1119
+Q + EE + T+L++ H L DR+++L +
Sbjct: 166 REELQDELLRLWEETR-KTVLLVTHDVDEAVYL-----ADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 22/221 (9%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 344
++ AE L +I+ +I G V I+G G GK++L+ + G P S
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS-GK 83
Query: 345 AVIRGTVAYVPQVSWIFN--ATVRDNILFGSAFEP-------ARYEKAIDVTSLQHDLDL 395
+ G VA + ++ F+ T R+NI + ++ I+ L +D
Sbjct: 84 VKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID- 142
Query: 396 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 455
P S G R++ + A + D+ + D+ L+ DA + +R
Sbjct: 143 QPVK----------TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNE 192
Query: 456 GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFED 495
KT VLV++ L + Q DR I + G ++ EG+ E+
Sbjct: 193 LVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEE 233
|
Length = 249 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 9/217 (4%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
+L+ LS ++P ++G G GKS++L R++ + G + + I+ L
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75
Query: 984 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEAL---ERAHLKDAIRRNSLGLDAQV 1039
+ L ++PQ + G TVR L + LW L + A + A+ + ++
Sbjct: 76 RRLALLPQHHLTPEGITVR-ELVAYGRSPWLSLWGRLSAEDNARVNQAMEQ--TRINHLA 132
Query: 1040 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSCTML 1098
+ S GQRQ L+ L + + +++LDE T +D+ + + +RE + T++
Sbjct: 133 DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVV 192
Query: 1099 IIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
+ H LN CD +++L +G V+ TPEE+++
Sbjct: 193 TVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPG 229
|
Length = 255 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 35/209 (16%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDASAVIR 348
L I+L + G +V I+G +G GK++L+ + +L +R
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELR 75
Query: 349 GTVAYVPQVSWIF-NATVRDNILFG-------SAFEP-ARYEKAIDVTSLQHDLDLLPGG 399
V V Q +F + TV +NI S E R + ++ L D P
Sbjct: 76 QKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPA- 134
Query: 400 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 459
+SGGQ+QRV++ARA+ N V +FD+P SALD + +V D
Sbjct: 135 ----------QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 184
Query: 460 GKTRVLVTNQLHFLSQV-DRIILVHEGMV 487
G T V+VT+++ F +V DR+I + +G +
Sbjct: 185 GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 2e-16
Identities = 115/542 (21%), Positives = 201/542 (37%), Gaps = 72/542 (13%)
Query: 613 TDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPM 672
T +SL L LL + +L + L + +L + IL P+
Sbjct: 43 TADTSL---LVLPEFLGLLLLFM---VSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPL 96
Query: 673 VFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ----LLSTFVLIGIVSTMSL- 727
R++ D+ RN++ F + ++ Q L + + +S
Sbjct: 97 ERIERLGSARLLAGLTSDV----RNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFL 151
Query: 728 ----WAIMPLLLLFYAAYLYYQ--STAREVKRLDSITRSPVYAQFGEALNG-----LSTI 776
W ++ + F Y+ + ARE T + + L G L+
Sbjct: 152 LTVVWIVVTIWGGFVLMARVYKHMAAARE-------TEDKLQNDYQTILEGRKELTLNRE 204
Query: 777 RAYKAYDRMADINGKSMDKNIRY-TLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 835
RA ++ + + + +I ++ A W I L + GL+ WL
Sbjct: 205 RAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLA---------- 254
Query: 836 AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 895
+AST + + L + L T +L + L A + N I AP +
Sbjct: 255 --LSLGWAST-NVAATIVLVLLFLRTPLLSAVGILPTLLTA-QVAFNKIAKLELAPYKAD 310
Query: 896 SNRPPPGWPSSGSIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 952
RP +P +++ +V Y+ + P+ + TI + V ++G G+GKS++
Sbjct: 311 FPRPQA-FPDWKTLELRNVRFAYQDNAFHVGPI----NLTIKRGELVFLIGGNGSGKSTL 365
Query: 953 LNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD 1012
L + + + G IL+DG ++ L D RK+ + LF + + +
Sbjct: 366 AMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL--GPEGKASPQL 423
Query: 1013 ADLW-EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1071
+ W + LE AH L S GQ++ L+L ALL ILVLDE
Sbjct: 424 IEKWLQRLELAHKTSLNDGRFSNLK---------LSTGQKKRLALLLALLEERDILVLDE 474
Query: 1072 ATAAVDVRTDALIQKTIREEFKSC--TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEE 1129
A D + + K T+ I+H + I DR+L + +G++ E T EE
Sbjct: 475 WAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE-LTGEE 533
Query: 1130 LL 1131
Sbjct: 534 RD 535
|
Length = 546 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 3e-16
Identities = 54/234 (23%), Positives = 107/234 (45%), Gaps = 50/234 (21%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---------------VSDASAV- 346
+ +++ ++ G ++ IVG +G GK++L A++G LP + S
Sbjct: 25 VRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84
Query: 347 ---IRGT-VAYVPQVSW-IFN--ATVRDNI-----LFGSAFEPARYEKAIDVTSLQHDLD 394
+RG +A + Q N T+ D I L G ++A++
Sbjct: 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE--------- 135
Query: 395 LLPGGDVTEIGERGVN------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 448
LL + + + +SGG +QRV +A A+ + I D+P +ALD Q
Sbjct: 136 LL---EQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQ 192
Query: 449 VFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
+ D + ++ EL G + +T+ L ++++ DR++++++G + E G E++ +N
Sbjct: 193 ILDLLKDLQREL-GMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 3e-16
Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 51/250 (20%)
Query: 905 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
+++ +V + + +S I + V ++G +G GK+++L + +
Sbjct: 2 PKPALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 965 GRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFS-----GTVRFNLDPFSEHSDADL 1015
G IL+DG DI D+ R I G++ QS LF V F L + A++
Sbjct: 60 GEILLDGEDIT-----DVPPEKRPI-GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEI 113
Query: 1016 W----EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1071
EALE L+ D + + S GQ+Q ++L+RAL+ K+L+LDE
Sbjct: 114 KARVEEALELVGLEGF-------ADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDE 162
Query: 1072 ATAAVD--VRTDALIQKTIREEFKS--CTMLIIAHRLNTIID-------CDRILLLDSGR 1120
+A+D +R +K ++E + T + + H D DRI +++ GR
Sbjct: 163 PLSALDAKLREQM--RKELKELQRELGITFVYVTH------DQEEALAMSDRIAVMNDGR 214
Query: 1121 VLEYDTPEEL 1130
+ + TPEE+
Sbjct: 215 IEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 4e-16
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
VL G+ ++ VG+VG GAGK+++L + + G +L+ G D+
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76
Query: 984 KILGIIPQSPVL---FSG--TVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLG 1034
+ + +PQ L F V P F ++ D RA ++ A+ R G
Sbjct: 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETD------RAAVERAMERT--G 128
Query: 1035 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDALIQKTIRE 1090
+ + S G+RQ + L+RAL + + +L+LDE TA++D VRT L++ + +
Sbjct: 129 VAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVR-RLVD 187
Query: 1091 EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
+ K+ I H L+ CD ++LL GRV P ++L+ +
Sbjct: 188 DGKTAVAAI--HDLDLAARYCDELVLLADGRVRAAGPPADVLTAD 230
|
Length = 402 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 5e-16
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 34/254 (13%)
Query: 258 LKRMEEFLLAEEK--------ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 309
L+++E L E P P G + N +D R L +++
Sbjct: 287 LEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLKDLSFR 344
Query: 310 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---VAYVPQ--VSWIFNAT 364
I G +AIVG G GK++L+ + GEL P+S V G + Y Q + T
Sbjct: 345 IDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG--TVKVGETVKIGYFDQHRDELDPDKT 402
Query: 365 VRDNI--LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 422
V + + F E +V + G D + +SGG+K R+ +A
Sbjct: 403 VLEELSEGFPDGDE-------QEVRAYLGRF-GFTGEDQEKPVG---VLSGGEKARLLLA 451
Query: 423 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIIL 481
+ + ++ + D+P + LD + + + + G T +LV++ +FL +V RI L
Sbjct: 452 KLLLQPPNLLLLDEPTNHLDIE-SLEALEEALL-DFEG-TVLLVSHDRYFLDRVATRIWL 508
Query: 482 VHEGMVKEEGTFED 495
V + + + EG +ED
Sbjct: 509 VEDKVEEFEGGYED 522
|
Length = 530 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 6e-16
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 29/224 (12%)
Query: 297 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTS-------LISAMLGEL----PPVSDASA 345
+ + N+NL+I G + ++G +G GKT+ LI GE+ + +
Sbjct: 11 GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 346 V-IRGTVAYVPQVSWIF-NATVRDNI-----LFGSAFEPARYEKAIDVTSLQHDLDLLPG 398
V +R + YV Q +F + TV +NI L + + + D L + L P
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK--WPKEKIRERAD--ELLALVGLDPA 126
Query: 399 GDVTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-G 456
E +R +SGGQ+QRV +ARA+ ++ + + D+P ALD Q+ + R
Sbjct: 127 ----EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQ 182
Query: 457 ELSGKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN 499
+ GKT V VT+ + DRI ++ G + + GT +++ +
Sbjct: 183 QELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 7e-16
Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 23/226 (10%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLM 980
L G+S I V +G +G GKS+ L R+ +L G I IDG +I G+
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 981 --DLRKILGIIPQSPVLFSGTV--------RFNLDPFSEHSDADLWEALERAHLKDAIRR 1030
+LRK +G++ Q P F ++ R N + + E L+ A L D ++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 1031 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1090
++ E+ S GQ+Q L ++RA+ +L++DE +A+D + A +++ I E
Sbjct: 139 -------KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 1091 EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEG 1135
K T++I+ H + D+ G ++EYD +++ +N
Sbjct: 192 LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPE 237
|
Length = 250 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 8e-16
Identities = 76/216 (35%), Positives = 114/216 (52%), Gaps = 31/216 (14%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSL--ISAML-----GEL----PPVSDASAVIRGTV 351
L +I+LDIP G +VA++G +G GKT+L I A L G + VS A R V
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDR-KV 76
Query: 352 AYVPQVSWIF-NATVRDNILFGSAFEPARYE---KAID--VTSLQHDLDLLPGGDVTEIG 405
+V Q +F + TV DNI FG P R AI VT L L+++ + +
Sbjct: 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQL---LEMV---QLAHLA 130
Query: 406 ER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG---ELSGK 461
+R +SGGQKQRV++ARA+ + + D+P ALDA V R+ R +R EL
Sbjct: 131 DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQV-RKELRRWLRQLHEELK-F 188
Query: 462 TRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
T V VT +Q + DR++++ +G +++ GT + +
Sbjct: 189 TSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 9e-16
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 44/221 (19%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVI---------------- 347
+++L+IP G + I+G +G GK++L+ + E P + +V
Sbjct: 24 DVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP---TSGSVFVDGQDLTALSEAELRQ 80
Query: 348 -RGTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 402
R + + Q FN TV +N+ F E A KA + L+L+
Sbjct: 81 LRQKIGMIFQH---FNLLSSRTVFENVAF--PLELAGVPKAEIKQRVAELLELV------ 129
Query: 403 EIGERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRG 456
+ ++ +SGGQKQRV++ARA+ +N + + D+ SALD + + + + I
Sbjct: 130 GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINR 189
Query: 457 ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 496
EL G T VL+T+++ + ++ DR+ ++ +G + EEGT ++
Sbjct: 190 EL-GLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
|
Length = 339 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 9e-16
Identities = 72/276 (26%), Positives = 113/276 (40%), Gaps = 24/276 (8%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI--- 985
+SF IP + VG +G GAGKS+ L L ++ G++ ++G D + LR I
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 986 ----LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 1041
L + P L S V L E D + E L+ L L+ +
Sbjct: 103 MGQKLQLWWDLPALDSLEV---LKLIYEIPDDEFAERLDFL-------TEILDLEGFLKW 152
Query: 1042 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLI 1099
S+GQR L+ ALL K+L LDE T +DV A I++ ++E E + T+L+
Sbjct: 153 PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212
Query: 1100 IAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVL 1158
H + I CDR+LL+D G+++ T +L F + + S +
Sbjct: 213 TTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ----EQFGPYKEFSVELKQAKSLSQLA 268
Query: 1159 GGEAENKLREENKQIDGQRRWLASSRWAAAAQYALA 1194
N + D R A A++ +
Sbjct: 269 LLGDVTIEEGLNIKNDVSREESADIIAKLLAEFEVR 304
|
Length = 325 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 43/236 (18%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA---MLGELPPVS 341
I +R+ + K L +I+LDIP G + A++G +G GK++L+ + +P
Sbjct: 1 IELRDLNVYYGDKH---ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 342 DASAV-IRGTVAYVPQVSWI---------------FNATVRDNILFG---SAFEPARYEK 382
D V + G Y V + F ++ DN+ +G +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 383 AIDVTSLQHDLDLLPGGDVTEIGER--GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 440
+L+ L E+ +R + +SGGQ+QR+ +ARA+ + +V + D+P SA
Sbjct: 118 ERVEEALR--KAALWD----EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171
Query: 441 LDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQV----DRIILVHEGMVKEEG 491
LD + + I EL + T V+VT H + Q DR + G + E G
Sbjct: 172 LDP-ISTAKIEELIA-ELKKEYTIVIVT---HNMQQAARVADRTAFLLNGRLVEFG 222
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 25/209 (11%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP------------VSDASAVIRGTVA 352
+++ + G + ++G G GKT+L+ + L P V D S V R
Sbjct: 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79
Query: 353 YVPQVSWIFNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 411
+ T R+N+ F +R E + L L LL D R
Sbjct: 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----RRVGEF 134
Query: 412 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 471
S G KQ+V++ARA+ + + + D+P S LD R+ D + + G+ + + H
Sbjct: 135 STGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSS---H 191
Query: 472 FLSQV----DRIILVHEGMVKEEGTFEDL 496
+ +V DR+I++H+G V EG+ E L
Sbjct: 192 IMQEVEALCDRVIVLHKGEVVLEGSIEAL 220
|
Length = 245 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 31/240 (12%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGEL-PPV 340
AI I N + E+ L NINLDIP + A++G +G GK++L+ ++ + +L P V
Sbjct: 1 AIEIENLNLFY---GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57
Query: 341 SDASAVI----------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAI 384
V+ R V V Q F ++ DNI +G + +K +
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 385 D---VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 441
D SL+ L + + + +SGGQ+QR+ +ARA+ +V + D+P SAL
Sbjct: 118 DEIVEESLKKAA--LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 442 DAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
D ++ + EL K T V+VT+ + +++ DR ++G + E G E + N
Sbjct: 176 DPIATGKIEELIQ--ELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 1e-15
Identities = 64/212 (30%), Positives = 109/212 (51%), Gaps = 34/212 (16%)
Query: 941 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI----LGIIPQSPVLF 996
I+G +G+GKS++L + R++E G++LIDG DIA +LR++ + ++ QS L
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 997 SG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR-------NSLGLDAQVSEAGENFSV 1048
TV N+ F LE + A R +GL+ + + S
Sbjct: 115 PHRTVLENV-AFG----------LEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSG 163
Query: 1049 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------TMLIIAH 1102
G +Q + L+RAL IL++DEA +A+ D LI++ +++E T++ I H
Sbjct: 164 GMQQRVGLARALAVDPDILLMDEAFSAL----DPLIRREMQDELLRLQAELQKTIVFITH 219
Query: 1103 RLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1133
L+ + DRI ++ GR+++ TPEE+L+N
Sbjct: 220 DLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 45/232 (19%)
Query: 284 AISIR--NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 341
ISIR N Y+ S + L +INL+I G +V + G +G GKT+L++ + G L V
Sbjct: 1 VISIRNLNHYYGHGS-LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLI-GGLRSVQ 58
Query: 342 DASAVIRGT----------VAYVPQVSWIFNA-------TVRDNILFGSAFEP-----AR 379
+ S + G V + +IF A T R N+ +P
Sbjct: 59 EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEA 118
Query: 380 YEKAIDVTS---LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 436
E+A + L LD P N+SGGQKQRV++ARA+ + + D+
Sbjct: 119 RERARAMLEAVGLGDHLDYYPH-----------NLSGGQKQRVAIARALVHRPKLVLADE 167
Query: 437 PLSALDAHVGRQVFDRCIRGELS---GKTRVLVTNQLHFLSQVDRIILVHEG 485
P +ALD+ GR V + + +L+ G T ++VT+ L DRI+ + +G
Sbjct: 168 PTAALDSKSGRDVVE--LMQKLAREQGCTILIVTHDNRILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 2e-15
Identities = 63/243 (25%), Positives = 117/243 (48%), Gaps = 24/243 (9%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++F DV R+ VL GL+F++ +KV ++G +G+GKS++L L + ++ G+I
Sbjct: 1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 969 IDGFDI-------AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEA--- 1018
++G + D + + + + ++F FNL P D ++ EA
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQS---FNLFPHKTVLD-NVTEAPVL 114
Query: 1019 ---LERAHLKD-AIRR-NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 1073
+ RA + A+ + +GL + S GQ+Q ++++RAL R K+++ DE T
Sbjct: 115 VLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVT 174
Query: 1074 AAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130
+A+D + IR TML++ H + + DR+ D GR++E P+E+
Sbjct: 175 SALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
Query: 1131 LSN 1133
Sbjct: 235 FRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-15
Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 35/220 (15%)
Query: 302 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVI--- 347
L+ N +P + A+ G +G GKTSLI+ + G P + DA I
Sbjct: 13 FALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLP 72
Query: 348 --RGTVAYVPQVSWIF-NATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTE 403
+ + YV Q + +F + TVR N+ +G A++++ + + ++H LD PG
Sbjct: 73 PEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG----- 127
Query: 404 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTR 463
+SGG+KQRV++ RA+ + ++ + D+PL++LD R++ R L +
Sbjct: 128 ------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLER--LRDEIN 179
Query: 464 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNN 499
+ + H L +V DR++++ G VK G E++ +
Sbjct: 180 IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219
|
Length = 352 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 2e-15
Identities = 58/239 (24%), Positives = 107/239 (44%), Gaps = 34/239 (14%)
Query: 909 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
++ + R+ P V +S ++ + ++G GAGKS+++ LF + + + G
Sbjct: 5 LEMRGITKRF----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 967 ILIDG--------FDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWE 1017
I +DG D + G+ G++ Q +L TV N+ E
Sbjct: 61 IRVDGKEVRIKSPRDAIRLGI-------GMVHQHFMLVPTLTVAENIILGLE-PSKGGLI 112
Query: 1018 ALERAH--LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1075
+A +K+ R GL + SVG++Q + + +AL R +++L+LDE TA
Sbjct: 113 DRRQARARIKELSER--YGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAV 170
Query: 1076 V-DVRTDALIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLE-YDTPEE 1129
+ D L + + + E K T++ I H+L ++ DR+ +L G+V+ D E
Sbjct: 171 LTPQEADELFEILRRLAAEGK--TIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAE 227
|
Length = 501 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 61/235 (25%), Positives = 125/235 (53%), Gaps = 25/235 (10%)
Query: 913 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 972
D+ Y P+ L G++F + V ++G GAGKS++ I++ G +LI G
Sbjct: 6 DLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGE 64
Query: 973 DIA--KFGLMDLRKILGIIPQSP--VLFSGTVR-------FNLDPFSEHSDADLWEALER 1021
I K L+++RK +GI+ Q+P LF+ TV NL S+ E +E+
Sbjct: 65 PIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG-LSK-------EEVEK 116
Query: 1022 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1081
+K+A++ +G++ ++ + S GQ++ ++++ L + +I+VLDE T+ +D
Sbjct: 117 -RVKEALKA--VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173
Query: 1082 ALIQKTIRE-EFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNE 1134
+ I K + + + T++I H ++ + + D++ ++ G++++ TP+E+ S+
Sbjct: 174 SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228
|
Length = 275 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 69/238 (28%), Positives = 129/238 (54%), Gaps = 21/238 (8%)
Query: 906 SGSIKFEDVVLRYRPELP-PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
S I+ +++ +Y+ + L+ +SF + + + I+G G+GKS+ + + ++E E
Sbjct: 2 SNIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES 61
Query: 965 GRILIDGFDIAKFGLMDLRKILGIIPQSP-VLFSGT-----VRFNLDPFSEHSDADLWEA 1018
G+I+IDG + + + D+R +G++ Q+P F G V F L E+ E
Sbjct: 62 GQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGL----ENKGIPHEEM 117
Query: 1019 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1078
ER + +A+ +G+ S GQ+Q ++++ A+ R KI++LDEAT+ +D
Sbjct: 118 KERVN--EAL--ELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 1079 --RTDALIQ--KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1132
R + LI+ K IR++++ T++ I H L+ + DR+L++ +G+V TP EL S
Sbjct: 174 EGRLE-LIKTIKGIRDDYQ-MTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229
|
Length = 279 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-15
Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 50/242 (20%)
Query: 279 TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 338
+S P + +R S+D K + N++L I G + ++G +G GKT+++ ++
Sbjct: 9 SSLSPLVELRGISKSFDGK---EVISNLDLTINNGEFLTLLGPSGCGKTTVLR-LIAGFE 64
Query: 339 PVSDASAVIRG-TVAYVP----QVSWIFNA-------TVRDNILFG--------SAFEPA 378
++ G + +VP V+ +F + TV +N+ FG + P
Sbjct: 65 TPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP- 123
Query: 379 RYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDP 437
R +A+ + L+ E +R +SGGQ+QRV++ARAV + V + D+
Sbjct: 124 RVMEALRMVQLE------------EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES 171
Query: 438 LSALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEE 490
LSALD + +Q ++ EL G T V VT +Q L+ DRI+++ +G ++++
Sbjct: 172 LSALDYKLRKQ-----MQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226
Query: 491 GT 492
GT
Sbjct: 227 GT 228
|
Length = 375 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (189), Expect = 2e-15
Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 23/222 (10%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LR 983
V+ +S T+ + VG++G GAGK++ + IV + G I+ID DI+ L R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 984 KILGIIPQSPVLFS---------GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 1034
+ +G +PQ +F ++ D +E + E +E H++ R+S+
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL--RDSM- 134
Query: 1035 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1094
G++ S G+R+ + ++RAL K ++LDE A VD + I++ I S
Sbjct: 135 --------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS 186
Query: 1095 -CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
+LI H + + C+R ++ G ++ + TP E+L +E
Sbjct: 187 GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 3e-15
Identities = 50/204 (24%), Positives = 92/204 (45%), Gaps = 31/204 (15%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAV----IR 348
P L N++ + G + IVG TG GK++LI A+ L D S + +R
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81
Query: 349 GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 408
++ +PQ +F+ T+R N+ D D ++ + E G
Sbjct: 82 SSLTIIPQDPTLFSGTIRSNL---------------DPFDEYSDEEIY---GALRVSEGG 123
Query: 409 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 468
+N+S GQ+Q + +ARA+ V + D+ +++D + + IR E + T + + +
Sbjct: 124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI-QKTIREEFTNSTILTIAH 182
Query: 469 QLHFLSQVDRIILVHEGMVKEEGT 492
+L + D+I+++ G VKE
Sbjct: 183 RLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 3e-15
Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 30/215 (13%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT------------ 350
L ++L++P G + ++G G GKT+L+ ++G LP S + G
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV-KSGSIRLDGEDITKLPPHERAR 74
Query: 351 --VAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE--IG 405
+AYVPQ IF TV +N+L G A P R + I +L P V + +G
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRR-SRKIP----DEIYELFP---VLKEMLG 126
Query: 406 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTR 463
RG ++SGGQ+Q++++ARA+ + + + D+P + + + + R IR G
Sbjct: 127 RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI-GRVIRRLRAEGGMAI 185
Query: 464 VLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 497
+LV L F ++ DR ++ G V G ++L
Sbjct: 186 LLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 3e-15
Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 32/238 (13%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER---GRILIDGFDIAKFGLMD 981
L+ +S +P G++G +GAGKS TL R V LER G +++DG D+ +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKS----TLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 982 L---RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL-KDAIRRNS----- 1032
L R+ +G+I Q L S F ++ LE + KD I+R
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVF----------GNVALPLELDNTPKDEIKRKVTELLA 126
Query: 1033 -LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 1091
+GL + N S GQ+Q ++++RAL K+L+ DEAT+A+D T I + ++E
Sbjct: 127 LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEI 186
Query: 1092 FKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS-KMVQST 1145
+ T+L+I H ++ + CD + ++ +G ++E T E+ S+ + + K ++ST
Sbjct: 187 NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRST 244
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (188), Expect = 3e-15
Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 31/228 (13%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER----GRILIDGFDI--AKFG 978
LHG+S + ++G +G GKS+ L L R+ + +E G I +G +I +K
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 979 LMDLRKILGIIPQSPVLFSGTVRFNLD--------PFSEHSDADLWEALERAHL----KD 1026
L++LRK +G++ Q P F +V N+ E D + E+L++A + KD
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139
Query: 1027 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1086
+ RN+ + FS GQ+Q + ++RAL R K+++LDE T+A+D + + I++
Sbjct: 140 NLDRNA-----------QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE 188
Query: 1087 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
T+ E T +++ H L D+ L +G ++E EE+
Sbjct: 189 TLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236
|
Length = 251 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 4e-15
Identities = 60/232 (25%), Positives = 108/232 (46%), Gaps = 32/232 (13%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELP---- 338
+I + + + L +I LD P G + ++G +G GK+SL+ + L E+P
Sbjct: 2 SIQLNGINCFYGAHQ---ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 339 -------------PVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAI 384
P A +R V V Q ++ + TV++N++ P R
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA----PCRVLGLS 114
Query: 385 DVTSLQHDLDLLPGGDVTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 443
+L LL + +R +++SGGQ+QRV++ARA+ V +FD+P +ALD
Sbjct: 115 KDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 444 HVGRQVFDRCIRGELSGK--TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGT 492
+ Q+ I EL+ T+V+VT+++ + R++ + G + E+G
Sbjct: 175 EITAQIVS--IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
|
Length = 242 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 5e-15
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 17/167 (10%)
Query: 295 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKT-------SLISAMLGEL----PPVSDA 343
+ L NI+L + G +AI G +G GK+ SLIS G L VS
Sbjct: 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL 70
Query: 344 SA-VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 402
R V+Y Q +F TV DN++F R ++A + L L +
Sbjct: 71 KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLA-RFAL----PDS 125
Query: 403 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 449
+ + +SGG+KQR+++ R + + + D+ SALD R +
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172
|
Length = 223 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 5e-15
Identities = 48/188 (25%), Positives = 91/188 (48%), Gaps = 12/188 (6%)
Query: 920 PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG--FDIAKF 977
P P VL GL+F + + ++G GAGKS++L L ++ + G +LIDG D ++
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 978 GLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSL 1033
GL++ R+ +G++ Q P LF+ V + + L L A ++ +R ++
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADV------DQDVAFGPLNLGLSEAEVERRVREALTAV 115
Query: 1034 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK 1093
G S G+++ ++++ A+ R +L+LDE TA +D + +R
Sbjct: 116 GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175
Query: 1094 SCTMLIIA 1101
++I+
Sbjct: 176 EGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 5e-15
Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 34/252 (13%)
Query: 895 ESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN 954
E+ PG S+ +I V Y + V++GLSFT+ + G++G GAGKS++
Sbjct: 28 EAKASIPGSMSTVAIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIAR 85
Query: 955 TLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL-FSGTVRFNLDPFSEH--- 1010
+ + + G+I + G + + +I G++PQ L TVR NL F +
Sbjct: 86 MILGMTSPDAGKITVLGVPVPARARLARARI-GVVPQFDNLDLEFTVRENLLVFGRYFGM 144
Query: 1011 ----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1066
+A + LE A L+ DA+VS+ S G ++ L+L+RAL+ ++
Sbjct: 145 STREIEAVIPSLLEFARLESKA-------DARVSD----LSGGMKRRLTLARALINDPQL 193
Query: 1067 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAH------RLNTIIDCDRILLLDSG 1119
L+LDE T +D LI + +R + T+L+ H RL CDR+ +L++G
Sbjct: 194 LILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVLEAG 248
Query: 1120 RVLEYDTPEELL 1131
R + P L+
Sbjct: 249 RKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 17/221 (7%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ E+V R+ L +SF++ + G++G GAGK++ + + I+ + G +L
Sbjct: 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 1027
DG + +I G +P+ L+ V L ++ EA R
Sbjct: 59 FDG---KPLDIAARNRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR------ 108
Query: 1028 IRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1085
I L L ++ E S G +Q + A++ ++L+LDE + +D L++
Sbjct: 109 IDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK 168
Query: 1086 KTIREEFKSCTMLII-AHRLNTIID-CDRILLLDSGRVLEY 1124
IRE ++ +I+ H++ + + CDR+LLL+ GR + Y
Sbjct: 169 DVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 6e-15
Identities = 68/248 (27%), Positives = 122/248 (49%), Gaps = 36/248 (14%)
Query: 908 SIKFEDVVLRYRPELPPVLHGL---SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
SIKFE+V Y P P GL SF + V +VG TG+GKS+++ +++
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 965 GRILIDGFDI----AKFGLMDLRKILGIIPQSP--VLFSGTVRFNLD--P----FSEHSD 1012
G I I G+ I L LRK + ++ Q P LF TV +++ P FSE
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSED-- 119
Query: 1013 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDE 1071
EA E+A +++ +GL + S GQ + ++++ + +IL LDE
Sbjct: 120 ----EAKEKA--LKWLKK--VGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDE 171
Query: 1072 ATAAVDVRTDALIQKTIREEFKSC-----TMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125
A +D +K + + FK T++++ H ++ + + D +L+L+ G+++++
Sbjct: 172 PAAGLDPEG----RKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHA 227
Query: 1126 TPEELLSN 1133
+P+E+ S+
Sbjct: 228 SPKEIFSD 235
|
Length = 287 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 7e-15
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 21/216 (9%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-R 983
+L G+S +P + ++GR G GK+++L TL ++ ++ G I +DG DI K + R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 984 KILGIIPQSPVLFSG-TVRFNL----DPFSEHSDADLWEALER-AHLKDAIRRNSLGLDA 1037
+ +PQ +F TV NL S E E LK+ + R
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRR------ 128
Query: 1038 QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSC 1095
G + S GQ+Q L+++RAL+ R K+L+LDE T + I + IR
Sbjct: 129 -----GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM 183
Query: 1096 TMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEEL 1130
+L++ L+ + DR +++ GRV+ +EL
Sbjct: 184 AILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 7e-15
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 43/235 (18%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL 979
VL G++ IP + ++G +G+GKS++L R++EL G + +DG DI K +
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 980 MDLRKILGIIPQSPVLFSGTVRFNLDPFSE-----------HSDADLWE----ALERAHL 1024
++LR+ + ++ Q P NL F S +L E ALE+A L
Sbjct: 78 IELRRRVQMVFQIPNPIP-----NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQL 132
Query: 1025 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1084
D ++ + L A S GQ+Q L ++RAL + ++L+ DE TA +D A I
Sbjct: 133 WDEVK-DRLDAPAG------KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI 185
Query: 1085 QKTIREEFKSCTMLIIAH------RLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1133
+ E K T++++ H R++ D + L G+++E+ E+ +N
Sbjct: 186 ESLFLELKKDMTIVLVTHFPQQAARIS-----DYVAFLYKGQIVEWGPTREVFTN 235
|
Length = 250 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 8e-15
Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 64/254 (25%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I E++ L Y P+L +S T+ P +++G+VGR GAGKS++L L +E + G +
Sbjct: 4 ITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALER------ 1021
LR +G + Q P L TV + +L E L
Sbjct: 62 RPK---------GLR--VGYLSQEPPLDPEKTVLDYV----IEGFGELRELLAELEEAYA 106
Query: 1022 ------AHLKDAIRRNSLGLDAQVSEAG-----------------ENFSVGQRQLLSLSR 1058
L + LD EA + S G R+ ++L+R
Sbjct: 107 LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALAR 166
Query: 1059 ALLRRSKILVLDEATAAVDVRTDALIQKTIR--EEF---KSCTMLIIAH-R--LNTIIDC 1110
ALL +L+LDE T +D+ ++I E++ T+++++H R L+ +
Sbjct: 167 ALLEEPDLLLLDEPTNHLDL-------ESIEWLEDYLKRYPGTVIVVSHDRYFLDNV--A 217
Query: 1111 DRILLLDSGRVLEY 1124
IL LD G++ Y
Sbjct: 218 THILELDRGKLTPY 231
|
Length = 530 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 8e-15
Identities = 57/224 (25%), Positives = 109/224 (48%), Gaps = 30/224 (13%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--------VELERGRILIDGFDI-- 974
+ ++ I + I+G +G GK+++L ++ R+ VE G+I G DI
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE---GKIYFKGQDIYD 74
Query: 975 AKFGLMDLRKILGIIPQSPVLFSGTVRFNLD--------PFSEHSDADLWEALERAHLKD 1026
+ + + RK +G++ Q P F ++ N+ D + E+L++A L D
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD 134
Query: 1027 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1086
++ ++++ G S GQ+Q L ++RAL ++++LDE T+A+D I+K
Sbjct: 135 EVKS-------ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK 187
Query: 1087 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DTPE 1128
+ E ++ T++I+ H + I D I + G ++EY T E
Sbjct: 188 LLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231
|
Length = 250 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 9e-15
Identities = 65/246 (26%), Positives = 121/246 (49%), Gaps = 42/246 (17%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+F++V + P VLH + I + V I+G +G+GKS++L + ++ E+ G ++
Sbjct: 2 IEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 969 IDGFDI--AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE------ 1020
+DG + K +R+ G++ Q +F L P ALE
Sbjct: 60 VDGLKVNDPKVDERLIRQEAGMVFQ---------QFYLFPH--------LTALENVMFGP 102
Query: 1021 ---RAHLKDAIRRNSLGLDAQV--SEAGENF----SVGQRQLLSLSRALLRRSKILVLDE 1071
R K+ + + L A+V +E ++ S GQ+Q ++++RAL + K+++ DE
Sbjct: 103 LRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDE 162
Query: 1072 ATAAVD--VRTDAL-IQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTP 1127
T+A+D +R + L + + + EE TM+I+ H + R++ +D GR+ E P
Sbjct: 163 PTSALDPELRHEVLKVMQDLAEE--GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP 220
Query: 1128 EELLSN 1133
+ L+ N
Sbjct: 221 QVLIKN 226
|
Length = 240 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 9e-15
Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 18/200 (9%)
Query: 313 GSLVAIVGGTGEGKTSLISAMLGELPPV-------SDASAVIRGTVAYVPQ---VSWIFN 362
G L+ ++G G GKT+L+ A+LG +PP + + YVPQ +W F
Sbjct: 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFP 65
Query: 363 ATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRV 419
+V ++ G R D +++ L + +TE+ +R V +SGGQ+QRV
Sbjct: 66 ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRV---GLTELADRPVGELSGGQRQRV 122
Query: 420 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL-HFLSQVDR 478
+ARA+ + V + D+P + LD + + I +G ++ T+ L ++ DR
Sbjct: 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDR 182
Query: 479 IILVHEGMVKEEGTFEDLSN 498
++L++ G V +GT + L +
Sbjct: 183 VVLLN-GRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 9e-15
Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 14/232 (6%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+ ED+ RY+ + L GLS +IP K ++G GAGKS++L L I +RGR+
Sbjct: 5 IEVEDLHFRYK-DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSP--VLFSGTV--RFNLDPFSEHSDADLWEALERAHL 1024
+ G ++ +R +G++ Q P +FS TV P + D D E R
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD--EVERRV-- 119
Query: 1025 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1084
++A++ ++ + + + S GQ++ ++++ L ++VLDE A +D R +
Sbjct: 120 EEALK--AVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL 177
Query: 1085 QKTIREEFKSCTMLIIA-HRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
+ + +I+A H ++ + D++++L GRVL LL++E
Sbjct: 178 MEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK-SLLTDE 228
|
Length = 274 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 9e-15
Identities = 61/242 (25%), Positives = 110/242 (45%), Gaps = 42/242 (17%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 977
+L ++ I + +G +G GKS+ L R+ + +G + IDG D+
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 978 GLMDLRKILGIIPQSPVLFSGTVRFN----------------LDPFSEHS--DADLWEAL 1019
++ LR +G++ Q P F ++ N LD E S LWE
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWE-- 137
Query: 1020 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 1079
L D ++ ++ S GQ+Q L ++RA+ + +L++DE +A+D
Sbjct: 138 ---ELGDRLKDSAF-----------ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPV 183
Query: 1080 TDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
+I+ I+E K+ T++++ H + DR+ SGR++EY+T +E+ N SS
Sbjct: 184 ATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSSK 243
Query: 1139 SK 1140
+K
Sbjct: 244 TK 245
|
Length = 251 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 36/243 (14%)
Query: 283 PAISIRNGYFSWDSKAERPTLLN-INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 341
+S+RN + LN ++L+I G + IVG +G GK++L + G P S
Sbjct: 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61
Query: 342 -------------DASAVIRGTVAYVPQVSW-IFNA--TVRDNILFGSAFEPARYEKAID 385
+ V V Q + N TV + EP R
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL-----SEPLRPHGLSK 116
Query: 386 VTSLQHDLDLLPGGDVTEIGE-----RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 440
S Q +LL D + R +SGGQ+QR+++ARA+ + I D+P SA
Sbjct: 117 --SQQRIAELL---DQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSA 171
Query: 441 LDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 497
LD V Q+ + ++ E G T + +++ L + + DRI ++ G + E G E+L
Sbjct: 172 LDVSVQAQILNLLLELKKER-GLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230
Query: 498 NNG 500
++
Sbjct: 231 SHP 233
|
Length = 252 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 44/223 (19%)
Query: 296 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP------VSDAS----- 344
K +P + +++L++ G + ++G G GKT+ + + GEL P ++ S
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR 70
Query: 345 AVIRGTVAYVPQVSWIFNA-----TVRDNILFGSAF-------EPARYEKAIDVTSLQHD 392
R ++ Y PQ F+A TVR+++ F + E + V L
Sbjct: 71 KAARQSLGYCPQ----FDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK 126
Query: 393 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 452
+ +SGG K+++S+A A+ V + D+P S LD R ++D
Sbjct: 127 ANKRAR-----------TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD- 174
Query: 453 CIRGELSGKTRVLVTNQLH---FLSQVDRIILVHEGMVKEEGT 492
I G++ +L T+ + L DRI ++ +G ++ G+
Sbjct: 175 LILEVRKGRSIILTTHSMDEAEALC--DRIAIMSDGKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 46/232 (19%)
Query: 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVA------- 352
L ++NL+I G +VAI+G +G GK++L+ ++ G + P + + G
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP-TSGEILFNGVQITKLKGKE 75
Query: 353 ---YVPQVSWIF-------NATVRDNILFG------------SAFEPARYEKAIDVTSLQ 390
+ IF +V +N+L G F +A+D +L+
Sbjct: 76 LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALD--ALE 133
Query: 391 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 450
+ +L + +R +SGGQ+QRV++ARA+ + + D+P+++LD ++V
Sbjct: 134 R-VGILD-----KAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVM 187
Query: 451 DRCIR-GELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLS 497
D + G T ++ LH + DRII + G + +G +L+
Sbjct: 188 DILKDINQEDGITVIVN---LHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236
|
Length = 258 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 60/226 (26%), Positives = 109/226 (48%), Gaps = 26/226 (11%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
L ++ +P V ++G +G+GKS++L + + + + GRI ++G D + D RK
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD-RK 73
Query: 985 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043
I G + Q LF TVR N+ A E + K R L Q+ G
Sbjct: 74 I-GFVFQHYALFKHLTVRDNI--------AFGLEIRKHPKAKIKARVEELLELVQLEGLG 124
Query: 1044 ENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR-------EEF 1092
+ + S GQRQ ++L+RAL ++L+LDE A+ DA ++K +R +E
Sbjct: 125 DRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGAL----DAKVRKELRSWLRKLHDEV 180
Query: 1093 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
T+ + + + DRI+++ +G++ + +P+E+ + + F
Sbjct: 181 HVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 1e-14
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 14/170 (8%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
+ GLSFT+ + + + G G GK+++L L ++ + G + +G +A+ R
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHR 73
Query: 984 KILGIIPQSPVLFSGTVRFNLD---PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 1040
IL + + + NL + + +AL L + L
Sbjct: 74 NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQL----- 128
Query: 1041 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1090
S GQ++ L+L+R L R+ + +LDE T A+D AL+ +R
Sbjct: 129 ------SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA 172
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-14
Identities = 54/213 (25%), Positives = 103/213 (48%), Gaps = 16/213 (7%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---FDIAK-FGLMDLRK 984
FT+P I GR+G+GK++++ + + + G I+++G FD K L ++
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 985 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043
+G + Q LF +VR NL + + ER + + LG+ +
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPS-----ERRISFERVIE-LLGIGHLLGRLP 129
Query: 1044 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ--KTIREEFKSCTMLII 1100
S G++Q +++ RALL ++L++DE AA+D R ++ + + EF +L +
Sbjct: 130 GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFG-IPILYV 188
Query: 1101 AHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132
+H L ++ DR+++L+ GRV E+ +
Sbjct: 189 SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 64/213 (30%), Positives = 115/213 (53%), Gaps = 27/213 (12%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI---AKFGLMD 981
VL ++ I P + V + G +G+GK+++L + + ++ G + + G ++ ++ L+
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 982 LRKILGIIPQSPVLF-SGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNSLG 1034
LR+ +G I Q+ L T R N L P + +A RA L+ ++G
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEA---RERARAMLE------AVG 130
Query: 1035 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD----ALIQKTIRE 1090
L + N S GQ+Q ++++RAL+ R K+++ DE TAA+D ++ L+QK RE
Sbjct: 131 LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
Query: 1091 EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL 1122
+ CT+LI+ H N I+D DRI+ ++ G++L
Sbjct: 191 --QGCTILIVTHD-NRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 2e-14
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 48/195 (24%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+ E++ L P+ +L LSF I P D++ I G +G GKSS+ L + GRI
Sbjct: 1 IELENLSL-ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI- 58
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 1028
G+ + +L +PQ P L GT L++ +
Sbjct: 59 ---------GMPEGEDLL-FLPQRPYLPLGT------------------------LREQL 84
Query: 1029 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1088
+ S G++Q L+ +R LL + K + LDEAT+A+D ++ + + +
Sbjct: 85 IYPW----------DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL 134
Query: 1089 REEFKSCTMLIIAHR 1103
+E T++ + HR
Sbjct: 135 KELG--ITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 51/236 (21%), Positives = 95/236 (40%), Gaps = 37/236 (15%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+ ++V +R + +L LS+ + P + IVG GAGK+++L+ L G +
Sbjct: 32 IELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT 89
Query: 969 IDGFDIAKFGLM-DLRKILGIIPQSPVL-----------------FSGTVRFNLDPFSEH 1010
+ G K + +LRK +G++ S L F ++ + +
Sbjct: 90 LLGRRFGKGETIFELRKRIGLV--SSELHERFRVRETVRDVVLSGFFASIGIYQEDLTA- 146
Query: 1011 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 1070
E L A LG + S G+++ + ++RAL++ ++L+LD
Sbjct: 147 ------EDLAAAQWLL----ELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD 196
Query: 1071 EATAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVL 1122
E +D+ + + E + +L + H I C LLL G V+
Sbjct: 197 EPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 2e-14
Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 15/205 (7%)
Query: 918 YRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 977
Y +L+ +SF++ + I G +G GKS++L + ++ G +L +G DI+
Sbjct: 15 YLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTL 74
Query: 978 GLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLGLD 1036
R+ + Q+P LF TV NL P+ + + A D + R L
Sbjct: 75 KPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQP-----DPAIFLDDLER--FALP 127
Query: 1037 AQVSEAGEN-FSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDALIQKTIREE 1091
+ S G++Q +SL R L K+L+LDE T+A+D + +I + +RE
Sbjct: 128 DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVRE- 186
Query: 1092 FKSCTMLIIAHRLNTIIDCDRILLL 1116
++ +L + H + I D+++ L
Sbjct: 187 -QNIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 2e-14
Identities = 63/229 (27%), Positives = 121/229 (52%), Gaps = 9/229 (3%)
Query: 909 IKFEDVVLRYRPELP-PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 967
++ E++V +Y E L+G+SF+I + V I+G+ G+GKS+ + + E G++
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 968 LIDGFDIAKFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALERAHLK 1025
IDG + + +LR+ +G++ Q+P TV ++ E+ E ++R +
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR--VD 122
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1085
+A+ ++ LD + E S GQ+Q ++++ + R +I++LDE+T+ +D I
Sbjct: 123 EALLAVNM-LDFKTREPAR-LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180
Query: 1086 KTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1132
+ I E E T+L I H L+ DRIL++ +G +++ P EL +
Sbjct: 181 RVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 24/205 (11%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
+L L+ TI I+G +G+GKS++LN + + + + G++ ++G + K
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 985 I----LGIIPQSPVLF-SGTVRFNLD---PFSEHSDAD----LWEALERAHLKDAIRRNS 1032
LG + Q+ L + TV NLD + + S + EALE+ L +
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGL-------N 125
Query: 1033 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 1092
L L ++ E S G++Q ++L+RA+L+ +++ DE T ++D + + + E
Sbjct: 126 LKLKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
Query: 1093 KSCTMLIIA-HRLNTIIDCDRILLL 1116
+II H DR++ L
Sbjct: 182 DEGKTIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 2e-14
Identities = 62/259 (23%), Positives = 115/259 (44%), Gaps = 31/259 (11%)
Query: 905 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE- 963
+ G I+ + + + Y VL LS I + + ++G++G GK+++L + V+
Sbjct: 2 ACGGIRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG 59
Query: 964 -RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSDADLWE- 1017
GRI I D+ ++ L ++ Q+ LF + F + AD+ E
Sbjct: 60 LTGRIAIADRDLTH--APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER 117
Query: 1018 ---ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1074
AL+ L DA L AQ+S G +Q ++++RA+ +L+LDE +
Sbjct: 118 VADALKLVGLGDAAAH----LPAQLSG-------GMQQRIAIARAIAIEPDVLLLDEPLS 166
Query: 1075 AVDVRTDALIQ---KTIREEFKSCTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEEL 1130
A+D A ++ + EE T+L + H + + + D+ ++ GR+ + P+ L
Sbjct: 167 ALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
Query: 1131 LSNEGSSFSKMVQSTGAAN 1149
F+ + GAAN
Sbjct: 227 YDAPADGFA--AEFLGAAN 243
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-14
Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 43/234 (18%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLMD 981
+ G+S T+ +G+VG +G+GKS++ L R++ +G I DG DI +
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRP 360
Query: 982 LRKILGIIPQSPVLFSGTVRFNLDP--------------FSEHSDADLWEALERAHLKDA 1027
LR+ + ++ Q P + +L P A E +R +A
Sbjct: 361 LRRRMQVVFQDP--YG-----SLSPRMTVGQIIEEGLRVHEPKLSAA--ERDQRV--IEA 409
Query: 1028 IRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1086
+ +GLD A + FS GQRQ ++++RAL+ + ++++LDE T+A+D +Q
Sbjct: 410 LE--EVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS----VQA 463
Query: 1087 TIREEFKS------CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
+ + + + L I+H L + C R++++ G+++E E + +N
Sbjct: 464 QVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN 517
|
Length = 534 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 3e-14
Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 32/244 (13%)
Query: 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-GELPPVS 341
I + N FS+ + +E L N++ +I G VAI+G G GK S IS +L G L P S
Sbjct: 6 VMIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGK-STISKILTGLLKPQS 63
Query: 342 -----DASAVIRGTVAYV-PQVSWIFN--------ATVRDNILFG---SAFEPARYEKAI 384
D + + + + ++ IF ATV D+I FG P + + I
Sbjct: 64 GEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDII 123
Query: 385 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 444
D + + ++ + + N+SGGQKQRV++A + N ++ IFD+ S LD
Sbjct: 124 DDLAKKVGMEDY-------LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
Query: 445 VGRQVFDRCIRGEL---SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 501
R++ I +L KT + +T+ + D++I+ EG + +G +++ NN E
Sbjct: 177 GKREIKK--IMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNKE 234
Query: 502 LFQK 505
+ +K
Sbjct: 235 ILEK 238
|
Length = 271 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 3e-14
Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 20/213 (9%)
Query: 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-------------VSDASAV 346
L +++L+I G L+A++G +G GKT+L+ A+ G + ++ A
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77
Query: 347 IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 406
RG + + V DN+ FG + KA + L L+ GD
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFG--LRAQKMPKADIAERVADALKLVGLGDAAA--H 133
Query: 407 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRV 464
+SGG +QR+++ARA+ DV + D+PLSALDA++ + + EL T +
Sbjct: 134 LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTIL 193
Query: 465 LVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
VT +Q L+ D+ ++ +G + G + L
Sbjct: 194 CVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 3e-14
Identities = 55/215 (25%), Positives = 110/215 (51%), Gaps = 9/215 (4%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
L+ ++F P + ++ ++G GAGKS++ I++ G +LI G I K + ++RK
Sbjct: 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK 78
Query: 985 ILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEA 1042
+G++ Q+P +FS TV ++ F + L E + A+ LGL+
Sbjct: 79 FVGLVFQNPDDQIFSPTVEQDI-AFGP-INLGLDEETVAHRVSSALH--MLGLEELRDRV 134
Query: 1043 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII-- 1100
+ S G+++ ++++ + ++LVLDE TA +D + + + + ++ M +I
Sbjct: 135 PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFS 194
Query: 1101 AHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
H+L+ + + D I ++D GR++ Y T EE+
Sbjct: 195 THQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
Length = 277 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 3e-14
Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 32/226 (14%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 985
++ S + + I+G +G+GKS+++ L R++E RG IL+DG DIAK +LR++
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 986 -----------LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 1034
++P VL V F L E E ERA +A+ +G
Sbjct: 104 RRKKISMVFQSFALLPHRTVL--ENVAFGL----EVQGVPKAEREERAL--EALEL--VG 153
Query: 1035 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1094
L+ + S G +Q + L+RAL IL++DEA +A+ D LI+ +++E
Sbjct: 154 LEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSAL----DPLIRTEMQDELLE 209
Query: 1095 C------TMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1133
T++ I H L+ + DRI ++ G +++ TPEE+L N
Sbjct: 210 LQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 3e-14
Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 405 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 464
G+ V++SGGQ+QRVS+ARA+ +V +FD+P SALD + +V + GKT V
Sbjct: 147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 206
Query: 465 LVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
+VT+++ F V +I +H+G ++EEG E L N
Sbjct: 207 VVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242
|
Length = 257 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 5e-14
Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 31/229 (13%)
Query: 913 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG- 971
+ + LP + F + + GI G +GAGKS++L + + + + G I+++G
Sbjct: 1 MLCVDIEKRLPDFTLKIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT 59
Query: 972 --FDIAKFGLMDL----RKILGIIPQSPVLFSG-TVR----FNLDPFSEHSDADLWEA-L 1019
FD K ++L RKI G++ Q LF VR F L D + L
Sbjct: 60 VLFDSRK--KINLPPQQRKI-GLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELL 116
Query: 1020 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 1079
+ L + R L S G++Q ++L+RAL + ++L+LDE +A+D
Sbjct: 117 DLLGLDHLLNRYPAQL-----------SGGEKQRVALARALAAQPELLLLDEPFSALDRA 165
Query: 1080 TDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125
+ +++ K+ ++ + H L+ DRI++++ GR+
Sbjct: 166 LRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 5e-14
Identities = 75/250 (30%), Positives = 117/250 (46%), Gaps = 44/250 (17%)
Query: 905 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
S I F +V RY +L V+ GLSF + + G++G GAGK++ L L + +
Sbjct: 4 SVAPIDFRNVEKRYGDKL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA 61
Query: 965 GRILIDGFDI---AKFGLMDLRKILGIIPQSPVL---FSGTVRFNLDPFSEH---SDADL 1015
G I + G + A+ R+ +G++PQ L F TVR NL F + S A
Sbjct: 62 GSISLCGEPVPSRARHA----RQRVGVVPQFDNLDPDF--TVRENLLVFGRYFGLSAAAA 115
Query: 1016 WEA----LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1071
LE A L++ DA+V E S G ++ L+L+RAL+ +LVLDE
Sbjct: 116 RALVPPLLEFAKLENKA-------DAKVGE----LSGGMKRRLTLARALVNDPDVLVLDE 164
Query: 1072 ATAAVDVRTDALIQKTIREEFKSC-TMLIIAH------RLNTIIDCDRILLLDSGRVLEY 1124
T +D + L+ + +R T+L+ H RL CDR+ +++ GR +
Sbjct: 165 PTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVIEEGRKIAE 219
Query: 1125 DTPEELLSNE 1134
P L+ +E
Sbjct: 220 GAPHALIESE 229
|
Length = 306 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 6e-14
Identities = 69/255 (27%), Positives = 118/255 (46%), Gaps = 52/255 (20%)
Query: 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 342
I + + F + A L +++ + G VAIVG G GK++L + G L P
Sbjct: 4 EIIRVEHISFRYP-DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--- 59
Query: 343 ASAVIRGTVAYVP-----------QVSWIFN--------ATVRDNILFGSAFEP------ 377
+ I TV + QV +F ATV+D++ FG E
Sbjct: 60 EAGTI--TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFG--LENIGVPRE 115
Query: 378 ---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 434
R ++A+ ++ L+ P +SGGQKQRV++A + D+ I
Sbjct: 116 EMVERVDQALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIIL 164
Query: 435 DDPLSALDAHVGRQ-VFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 491
D+ S LD GR+ V + R ++ + G T + +T+ L +Q DR+I++++G + EEG
Sbjct: 165 DEATSMLDP-RGRREVLETVRQLKEQ-KGITVLSITHDLDEAAQADRVIVMNKGEILEEG 222
Query: 492 TFEDLSNNGELFQKL 506
T E++ +G + Q++
Sbjct: 223 TPEEIFKSGHMLQEI 237
|
Length = 279 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 6e-14
Identities = 71/252 (28%), Positives = 117/252 (46%), Gaps = 42/252 (16%)
Query: 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER-- 964
SI+ +V R+ L +S IP + V ++G +G+GK+ TL R++ LER
Sbjct: 2 SIEVRNVSKRF--GDFVALDDVSLDIPSGELVALLGPSGSGKT----TLLRLIAGLERPD 55
Query: 965 -GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNL------DPFSEHSDADLW 1016
G IL G D + + R + G + Q LF TV N+ P SE
Sbjct: 56 SGTILFGGEDATDVPVQE-RNV-GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEA-- 111
Query: 1017 EALERAH-LKDAIRRNSLG--LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 1073
E + H L ++ + L AQ+S GQRQ ++L+RAL K+L+LDE
Sbjct: 112 EIRAKVHELLKLVQLDWLADRYPAQLSG-------GQRQRVALARALAVEPKVLLLDEPF 164
Query: 1074 AAVDVRTDALIQKTIREEFK------SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1126
A+ DA ++K +R + T + + H ++ DR+++++ GR+ + T
Sbjct: 165 GAL----DAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
Query: 1127 PEELLSNEGSSF 1138
P+E+ + S F
Sbjct: 221 PDEVYDHPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 6e-14
Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 36/218 (16%)
Query: 302 TLLN-INLDIPVGSLVAIVGGTGEGKTSLISAM-LGELP----------------PVSDA 343
T+L+ I+L++ G +VAI+G +G GKT+L+ + L E P +S
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 344 SAVIRGTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLP-- 397
+IR +V V FN TV +NI+ G P + + +LL
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG----PVIVKGEPKEEATARARELLAKV 132
Query: 398 --GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 455
G T R +SGGQ+QRV++ARA+ +V +FD+P SALD + +V + IR
Sbjct: 133 GLAGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN-TIR 188
Query: 456 GELSGK-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 491
K T V+VT+++ F V DR I + +G + E+G
Sbjct: 189 QLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
|
Length = 250 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 6e-14
Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 36/244 (14%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I E+V Y + VL +S IP I+G GAGKS++L+ + R+++ + G I
Sbjct: 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVR----FNLDPFS---------EHSDAD 1014
IDG ++ +L K L I+ Q + S TVR F P+S +
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIIN-- 117
Query: 1015 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1074
EA+E HL+D R LD S GQRQ ++ L + + ++LDE
Sbjct: 118 --EAIEYLHLEDLSDRY---LD--------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLN 164
Query: 1075 AVDVRTDALIQKTIR---EEFKSCTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEEL 1130
+D++ I K +R +E T++++ H +N D I+ L +G+V++ +P+E+
Sbjct: 165 NLDMKHSVQIMKILRRLADELGK-TIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223
Query: 1131 LSNE 1134
+ E
Sbjct: 224 IQPE 227
|
Length = 252 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 6e-14
Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 46/245 (18%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-----GRILIDGFDIAKFG-- 978
L G+S IP ++G +G GKS+ L L R+ + + G + +DG DI + G
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 979 LMDLRKILGIIPQSPVLFSGTVRFNLD--PFSEHSD------------------ADLWE- 1017
L++LRK +G++ QSP F ++R N+ P +H D +L E
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGP-RKHGDINTGLLARLLGRDDKDAEDELVER 179
Query: 1018 ALERAHL----KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 1073
+L +A L D + N+LGL S GQ+Q L ++R L +++++DE
Sbjct: 180 SLRQAALWDEVNDRLDDNALGL-----------SGGQQQRLCIARCLAVDPEVILMDEPA 228
Query: 1074 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELL 1131
+A+D + I+ I E + T++++ H + I + L G ++EYD +++
Sbjct: 229 SALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIF 288
Query: 1132 SNEGS 1136
N S
Sbjct: 289 ENPES 293
|
Length = 305 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 6e-14
Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 49/236 (20%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 346
ER L ++N+ IP GS VAI+G TG GK++L+ + G L P S +
Sbjct: 19 ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78
Query: 347 ----IRGTVAYVPQV--SWIFNATVRDNILFG---------SAFEPARYEKAIDVTSLQH 391
+R V V Q +F TV +I FG A + AR + I++ L
Sbjct: 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAR--EMIELVGLPE 136
Query: 392 D-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR--- 447
+ L P +SGGQ +RV++A + +V + D+P + LD GR
Sbjct: 137 ELLARSP-----------FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GRKEM 184
Query: 448 -QVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 501
++F + + + G T VLVT+ + ++ D+I+++H+G V +GT ++ + +
Sbjct: 185 MEMFYKLHKEK--GLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238
|
Length = 290 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 7e-14
Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 55/236 (23%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAV-------------- 346
++ ++ G ++ IVG +G GK+ L A++G LP + +
Sbjct: 23 GVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKEL 82
Query: 347 --IRGT-VAYVPQ-----------VSWIFNATVRDNILFGSAFEPARYEKAIDVTSL--- 389
IRG +A + Q + +R + + E+AI++ L
Sbjct: 83 RKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLR--LHGKGLSKKEAKERAIELLELVGI 140
Query: 390 ---QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 446
+ L P +SGG +QRV +A A+ N + I D+P +ALD V
Sbjct: 141 PDPERRLKSYP-----------HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQ 189
Query: 447 RQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
Q+ D + ++ E G +L+T+ L ++++ DR+ +++ G + EEG E++ N
Sbjct: 190 AQILDLLKELQREK-GTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 8e-14
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 53/212 (25%)
Query: 293 SWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------ 346
S SK+ + L N++ G L AI+G +G GK++L++A+ G + + V
Sbjct: 15 SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP 74
Query: 347 -----IRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD 400
R + YVPQ + TVR+ ++F +
Sbjct: 75 LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL------------------------- 109
Query: 401 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LS 459
RG +SGG+++RVS+A + SN + D+P S LD+ QV +R +
Sbjct: 110 ------RG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVM-SLLRRLADT 160
Query: 460 GKTRVLVTNQLHFLSQV----DRIILVHEGMV 487
G+T + +Q S++ D+++L+ +G V
Sbjct: 161 GRTIICSIHQP--SSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 9e-14
Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 33/218 (15%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPP----------VSDASAVIRGTV 351
L +I+L + G V ++G +G GKT+L+ + G E ++ R
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD-Y 78
Query: 352 AYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL--LPGGDVTEIGERG 408
V Q +F N TV DNI +G + +A + LDL LPG + G+
Sbjct: 79 GIVFQSYALFPNLTVADNIAYG--LKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQ-- 134
Query: 409 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------GKT 462
+SGGQ+QRV++ARA+ ++ + + D+PLSALDA V +R E+ G T
Sbjct: 135 --LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREH-----LRTEIRQLQRRLGVT 187
Query: 463 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 499
++VT +Q LS DRI++++ G++++ GT +++ +
Sbjct: 188 TIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 1e-13
Identities = 58/259 (22%), Positives = 118/259 (45%), Gaps = 15/259 (5%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------ELPPVSDASAVI---RGTV 351
L NI+ I G V ++G TG GK++L+SA L ++ VS S + R
Sbjct: 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAF 79
Query: 352 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 411
+PQ +IF+ T R N+ + K + L+ ++ PG + + G +
Sbjct: 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVL 139
Query: 412 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 471
S G KQ + +AR+V S + + + D+P + LD + QV + ++ + T +L +++
Sbjct: 140 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDP-ITYQVIRKTLKQAFADCTVILSEHRIE 198
Query: 472 FLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTS 531
+ + R +++ E V++ + + L N F++ + + +++ + +
Sbjct: 199 AMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSDRLKLFPRRNSSKSK---RKP 255
Query: 532 KPAANGVDNDLPKEASDTR 550
+P + + +E DTR
Sbjct: 256 RPQIQALQEETEEEVQDTR 274
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-13
Identities = 71/248 (28%), Positives = 121/248 (48%), Gaps = 35/248 (14%)
Query: 290 GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG 349
Y S+ + L +I++ G++ IVG +G GK++LI ++ L ++ S +I G
Sbjct: 10 SYSSFG----KEILKDISVKFEGGAIYTIVGPSGAGKSTLIK-LINRLIDPTEGSILIDG 64
Query: 350 T-------------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 396
+ V Q +F TV+DNI +G + EK +DV ++ L ++
Sbjct: 65 VDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPML---KGEKNVDV---EYYLSIV 118
Query: 397 PGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 455
G E R V N+SGG+ QRVS+AR + +N +V + D+P SALD ++ + I
Sbjct: 119 --GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-TSTEIIEELIV 175
Query: 456 GELSGKTRVLVTNQLHFLSQVDRI----ILVHEGMVKEEG-TFEDLSNNGELFQKLMENA 510
+L K + V H + Q RI +++G++ E T++ +N KL
Sbjct: 176 -KLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFIQ- 233
Query: 511 GKMEEYVE 518
GK++E V+
Sbjct: 234 GKLKEEVK 241
|
Length = 241 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 1e-13
Identities = 65/221 (29%), Positives = 94/221 (42%), Gaps = 39/221 (17%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAV--I 347
P L NINL I G + I+G G GK++L + G L P D S + I
Sbjct: 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75
Query: 348 RGTVAYV---PQVSWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDV 401
R V V P+ ++ TV +++ FG P K +D +
Sbjct: 76 RKLVGIVFQNPETQFV-GRTVEEDLAFGPENLCLPPIEIRKRVDRA-------------L 121
Query: 402 TEIG------ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 455
EIG +SGGQ Q V++A + + IFD+ S LD G V +R +
Sbjct: 122 AEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKK 181
Query: 456 GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
GKT V +T+ L L DRII++ G + EG E++
Sbjct: 182 LHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENV 222
|
Length = 274 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-13
Identities = 72/309 (23%), Positives = 124/309 (40%), Gaps = 29/309 (9%)
Query: 197 SFILNSIPVLVTV-VSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 255
+ ++I +L + + F + LG T A L L LR PL ++ ++ A
Sbjct: 235 AVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLL-FLRTPLLSAVGILPTLLTAQ 293
Query: 256 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 315
V+ ++ + LA K P P + +RN F++ A + INL I G L
Sbjct: 294 VAFNKIAKLELAPYKADFPRPQAFPDWKTLELRNVRFAYQDNAF--HVGPINLTIKRGEL 351
Query: 316 VAIVGGTGEGKTSLISAMLGELPPVS-----DASAV-------IRGTVAYVPQVSWIFNA 363
V ++GG G GK++L + G P S D V R + V +F
Sbjct: 352 VFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLF-- 409
Query: 364 TVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 422
D +L P EK + L H L G + +S GQK+R+++
Sbjct: 410 ---DQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSN------LKLSTGQKKRLALL 460
Query: 423 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI-RGELSGKTRVLVTNQLHFLSQVDRIIL 481
A+ D+ + D+ + D R+ + + + GKT +++ H+ DR++
Sbjct: 461 LALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLE 520
Query: 482 VHEGMVKEE 490
+ G + E
Sbjct: 521 MRNGQLSEL 529
|
Length = 546 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-13
Identities = 64/241 (26%), Positives = 100/241 (41%), Gaps = 47/241 (19%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-----VELERGRILIDGFDIAKFG 978
+ G+SF I + + +VG +G+GKS ++ + G IL DG D+
Sbjct: 24 EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83
Query: 979 LMDLRKI----LGIIPQSPVLFSGTVRFNLDP-----------FSEH---SDADLW---- 1016
LR + +G+I Q P+ +L+P H S A
Sbjct: 84 ERQLRGVRGNKIGMIFQEPMT-------SLNPLHTIGKQLAEVLRLHRGLSRAAARARAL 136
Query: 1017 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 1076
E LE + + +R LDA E S GQRQ + ++ AL +L+ DE T A+
Sbjct: 137 ELLELVGIPEPEKR----LDAYPHE----LSGGQRQRVMIAMALANEPDLLIADEPTTAL 188
Query: 1077 DVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132
DV A I ++E E +L I H L + DR+ ++ G ++E T E L +
Sbjct: 189 DVTVQAQILDLLKELQAELG-MAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA 247
Query: 1133 N 1133
Sbjct: 248 A 248
|
Length = 534 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 1e-13
Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 15/220 (6%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
++ G+ T PP G++G G+GKS++L L + + G + + G D+
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 984 KILGIIPQS-----PVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSLGLD 1036
+ + ++ Q P+ V P LW A + H + R L
Sbjct: 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRS-----LW-AGDSPHDAAVVDRALARTELS 128
Query: 1037 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 1096
S G+RQ + ++RAL + K+L+LDE T +DVR +RE +
Sbjct: 129 HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV 188
Query: 1097 MLIIA-HRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
++ A H LN CD +++LD GRV+ P E+L+
Sbjct: 189 TVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPA 228
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-13
Identities = 66/244 (27%), Positives = 122/244 (50%), Gaps = 26/244 (10%)
Query: 909 IKFEDVVLRY----RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
IK +V RY R + V +S + + GIVG +GAGK+++ + ++E
Sbjct: 280 IKVRNVSKRYISVDRGVVKAV-DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS 338
Query: 965 G----RILIDGFDIAKFGLMD---LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 1017
G R+ + D+ K G ++ +GI+ Q L+ R LD +E +L +
Sbjct: 339 GEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY--PHRTVLDNLTEAIGLELPD 396
Query: 1018 ALERAHLKDAIRRNSLGLDAQVSEA-----GENFSVGQRQLLSLSRALLRRSKILVLDEA 1072
E A +K I +G D + +E + S G+R ++L++ L++ +I++LDE
Sbjct: 397 --ELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEP 454
Query: 1073 TAAVDVRTDALIQKTI---REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1128
T +D T + +I REE + T +I++H ++ ++D CDR L+ G++++ PE
Sbjct: 455 TGTMDPITKVDVTHSILKAREEMEQ-TFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPE 513
Query: 1129 ELLS 1132
E++
Sbjct: 514 EIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 33/244 (13%)
Query: 909 IKFEDVVLRY----RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM---LNTLFRIVE 961
IK ++V +Y L ++ + + + I+GR G+GKS++ +N L E
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 962 LERGRILIDGFDIAKFG-LMDLRKILGIIPQSP------VLFSGTVRF---NLDPFSEHS 1011
G++ +DG D + L D+R G++ Q+P + V F NL E
Sbjct: 65 ---GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEI 121
Query: 1012 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1071
+ E+L++ + + RR++ L S GQ+Q ++++ L R + ++ DE
Sbjct: 122 RERVDESLKKVGMYE-YRRHAPHL----------LSGGQKQRVAIAGILAMRPECIIFDE 170
Query: 1072 ATAAVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEE 1129
TA +D + TI+E K T+++I H + ++ DRI+++DSG+V+ TP+E
Sbjct: 171 PTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKE 230
Query: 1130 LLSN 1133
+
Sbjct: 231 IFKE 234
|
Length = 280 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 1e-13
Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 18/219 (8%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
+ + V Y LP + + V I+G +GAGKS++LN + +E G I
Sbjct: 1 LALDKVRYEYE-HLP---MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIK 56
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 1027
++ GL ++ + ++ Q LF+ TVR N+ H L A ++ + DA
Sbjct: 57 VNDQSHT--GLAPYQRPVSMLFQENNLFAHLTVRQNIG-LGLHPGLKL-NAEQQEKVVDA 112
Query: 1028 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDAL 1083
+ +G+ + E S GQRQ ++L+R L+R + IL+LDE +A+D AL
Sbjct: 113 AQ--QVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLAL 170
Query: 1084 IQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRV 1121
+++ E + T+L++ H L+ +I ++ G++
Sbjct: 171 VKQLCSE--RQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-13
Identities = 83/309 (26%), Positives = 139/309 (44%), Gaps = 46/309 (14%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTS-------LISAMLGEL----PPVSDASAV 346
+ + ++NL I G + ++G +G GKT+ LI GE+ +SD V
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPV 71
Query: 347 -IRGTVAYVPQVSWIF-NATVRDNI-----LFGSAFEPARYEKAIDVTSLQHDLDLLPGG 399
+R + YV Q +F + TV +NI L G ++ R +K D +L L G
Sbjct: 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLG--WDKERIKKRAD------ELLDLVGL 123
Query: 400 DVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR---QVFDRCIR 455
D +E +R + +SGGQ+QRV +ARA+ ++ + + D+P ALD + R Q + ++
Sbjct: 124 DPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP-ITRKQLQEEIKELQ 182
Query: 456 GELSGKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN--GELFQKLMENAGK 512
EL GKT V VT+ + L DRI ++ G + + T +++ N + + G+
Sbjct: 183 KEL-GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFF---GE 238
Query: 513 MEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRK----TKEGKSVL--IKQEERE 566
E + D A+G L + D G+SVL + ++ R
Sbjct: 239 SERGLRLLSLVSVADAVRRGEPADG--EPLLEGFVDRDALSDFLARGRSVLPVVDEDGRP 296
Query: 567 TGVVSFKVL 575
G V+ L
Sbjct: 297 LGTVTRADL 305
|
Length = 309 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-13
Identities = 67/244 (27%), Positives = 106/244 (43%), Gaps = 25/244 (10%)
Query: 903 WPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 961
+P + VL R + +SFT+ + +GI G GAG++ + LF
Sbjct: 251 FPEPPEEGIGEPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP 310
Query: 962 LERGRILIDGFDIA--------KFGLM---DLRKILGIIPQSPVLFSGTVRFNLDPFSEH 1010
G IL+DG + K G+ + RK G++ + + T+ +L FS
Sbjct: 311 ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLA-SLRRFSRR 369
Query: 1011 SDADLWEALERAHLKDAIRRNSL---GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1067
+ ERA + IRR + + + S G +Q + L+R L K+L
Sbjct: 370 GL--IDRRKERALAERYIRRLRIKTPSPEQPIG----TLSGGNQQKVVLARWLATDPKVL 423
Query: 1068 VLDEATAAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGR-VLEY 1124
+LDE T +DV A I + IRE +L+I+ L ++ DRIL++ GR V E
Sbjct: 424 ILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGEL 483
Query: 1125 DTPE 1128
D E
Sbjct: 484 DREE 487
|
Length = 500 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 2e-13
Identities = 62/231 (26%), Positives = 111/231 (48%), Gaps = 29/231 (12%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---FDIAKFGLM 980
L +S I + V ++G +GAGKS++L + + + GRI ++G FD++ +
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR 75
Query: 981 DLRKILGIIPQSPVLFSG-TVR----FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL 1035
D RK+ G + Q LF TV F L E EA RA +++ +R
Sbjct: 76 D-RKV-GFVFQHYALFPHMTVADNIAFGLKVRKERPS----EAEIRARVEELLRL----- 124
Query: 1036 DAQVSEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK---TI 1088
Q+ + + S GQRQ ++L+RAL K+L+LDE A+D + +++ +
Sbjct: 125 -VQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL 183
Query: 1089 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
+ T + + H ++ DR+++L+ GR+ + P+E+ + S F
Sbjct: 184 HDRLG-VTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233
|
Length = 345 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 2e-13
Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 37/232 (15%)
Query: 278 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 337
+T+ L IR Y S + + E L I+LDI G +VAIVG +G GK++L++ +LG L
Sbjct: 1 MTALLELKDIRRSYPSGEEQVE--VLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGCL 57
Query: 338 PPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL-------FGSAFE-------------- 376
+ + + G AT+ + L FG F+
Sbjct: 58 DKPTSGTYRVAGQDV----------ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNV 107
Query: 377 --PARYEKAIDVTSLQHDLDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFI 433
PA Y L +LL + + + + +SGGQ+QRVS+ARA+ + V +
Sbjct: 108 EVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVIL 167
Query: 434 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 485
D+P ALD+H G +V + G T ++VT+ +Q +R+I + +G
Sbjct: 168 ADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDG 219
|
Length = 648 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 2e-13
Identities = 55/226 (24%), Positives = 111/226 (49%), Gaps = 30/226 (13%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR----IVELERGRILIDGFDIAKFGLMD 981
L ++ I + ++G +G GKS+ L R I +++ G + I+G D+ ++
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKID-GLVEIEGKDVKNQDVVA 76
Query: 982 LRKILGIIPQSPVLFSGTVRFNLD---------PFSEHSDADLWEALERAHL----KDAI 1028
LRK +G++ Q P +F ++ N+ + +A + + L++ L KD +
Sbjct: 77 LRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL 136
Query: 1029 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1088
++N+L L S GQ+Q L ++RAL + K+L+LDE T+A+D + +I++ +
Sbjct: 137 KQNALAL-----------SGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185
Query: 1089 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
+E + +M+++ H + D G ++E+ +E N
Sbjct: 186 KELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231
|
Length = 246 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 41/233 (17%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VELER--GRILIDGFDIAK--FG 978
+ G+ + ++G +G+GKS+ L +L R+ +++ R G+IL G DI +
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 979 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 1021
+ ++RK +G++ Q P F+ ++ N LD E S A LW+
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD---- 151
Query: 1022 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1081
+KD + +++L L S GQ+Q L ++RA+ + IL++DE +A+D +
Sbjct: 152 -QVKDDLHKSALTL-----------SGGQQQRLCIARAIAVKPDILLMDEPASALDPIST 199
Query: 1082 ALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1133
+++T+ E K+ T++I+ H + D G ++EYD + +N
Sbjct: 200 MQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTN 252
|
Length = 267 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 54/228 (23%), Positives = 98/228 (42%), Gaps = 31/228 (13%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+F +V Y P LH +S I + + + G +GAGK+++L L+ + RG++
Sbjct: 2 IEFHNVSKAY-PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 969 IDGFDIAKF---GLMDLRKILGIIPQ-----------SPVLFSGTVRFNLDPFSEHSDAD 1014
I G D+ + L LR+ +G++ Q V VR + +
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGA 120
Query: 1015 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1074
+ H DA E S G++Q ++++RA++ +L+ DE T
Sbjct: 121 ALRQVGLEHKADAF--------------PEQLSGGEQQRVAIARAIVNSPPLLLADEPTG 166
Query: 1075 AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID--CDRILLLDSGR 1120
+D I ++ K T +I+A +++D R+++LD GR
Sbjct: 167 NLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 35/94 (37%), Positives = 60/94 (63%), Gaps = 5/94 (5%)
Query: 409 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--GKTRVLV 466
++SGGQ+QRV++ARA+ +V +FD+P SALD + +V + +L+ G+T V+V
Sbjct: 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK--VMQDLAEEGRTMVVV 208
Query: 467 TNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
T+++ F V +I +H+G ++EEG E + N
Sbjct: 209 THEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGN 242
|
Length = 256 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-13
Identities = 47/212 (22%), Positives = 92/212 (43%), Gaps = 35/212 (16%)
Query: 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYV 354
R L +++ IP G V + G +G GK++L+ + GE P + + R +
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREI 74
Query: 355 P----QVSWIF-------NATVRDNILFG---SAFEPARYEK----AIDVTSLQHDLDLL 396
P Q+ +F + TV +N+ P + +D+ L+H L
Sbjct: 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARAL 134
Query: 397 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 456
P +SGG++QRV++ARA+ + V + D+P LD + ++
Sbjct: 135 P-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183
Query: 457 ELSGKTRVLVTNQLHFLSQVD-RIILVHEGMV 487
G T ++ T+ L ++++ R++ + +G +
Sbjct: 184 NRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 3e-13
Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 12/218 (5%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
+LH LS T P G++G G+GKS++L L R G IL+D + + +
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 985 ILGIIPQS-PVLFSGTVR--FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 1041
+ +PQ P TVR + + H + A +R +++AI + +GL
Sbjct: 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAI--SLVGLKPLAHR 143
Query: 1042 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDALIQKTIREEFKSCTM 1097
++ S G+RQ ++ + + S+ L+LDE T+A+D V AL+ + +E + T+
Sbjct: 144 LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE--RGLTV 201
Query: 1098 LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
+ + H +N CD ++ L G ++ TP EL+ E
Sbjct: 202 IAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
|
Length = 265 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-13
Identities = 60/211 (28%), Positives = 108/211 (51%), Gaps = 23/211 (10%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TVAYVP----QVSW 359
++LDI G ++G +G GKT+L+ ++ + ++ G + +P V+
Sbjct: 18 GVSLDIKEGEFFTLLGPSGCGKTTLLR-LIAGFETPTSGEILLDGKDITNLPPHKRPVNT 76
Query: 360 IF-------NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-I 411
+F + TV +NI FG + KA + LDL+ + R + +
Sbjct: 77 VFQNYALFPHLTVFENIAFG--LRLKKLPKAEIKERVAEALDLV---QLEGYANRKPSQL 131
Query: 412 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR--QVFDRCIRGELSGKTRVLVT-N 468
SGGQ+QRV++ARA+ + V + D+PL ALD + + Q+ + ++ EL G T V VT +
Sbjct: 132 SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL-GITFVFVTHD 190
Query: 469 QLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 499
Q L+ DRI ++++G +++ GT E++
Sbjct: 191 QEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 3e-13
Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 905 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
I DV + +R L SFT+P +VG G+GKS++ L V L
Sbjct: 3 QQAGIVVNDVTVTWR-NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS 61
Query: 965 GRILIDGFDIAKFGLMDLRK-ILGIIPQS-------PVLFSGTV---RFN----LDPFSE 1009
G+I I G + L+K ++ +PQS PVL V R+ L +
Sbjct: 62 GKISILGQPTRQ----ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKK 117
Query: 1010 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 1069
+ AL R + + R Q+ E S GQ++ + L+RA+ ++ ++++L
Sbjct: 118 RDRQIVTAALARVDMVEFRHR-------QIGE----LSGGQKKRVFLARAIAQQGQVILL 166
Query: 1070 DEATAAVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL 1122
DE VDV+T+A I +RE + TML+ H L ++ + CD +++ G VL
Sbjct: 167 DEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVL 220
|
Length = 272 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 4e-13
Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 16/220 (7%)
Query: 905 SSGSIKFEDVVLRYRPELPP--VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 962
S S K + EL P +L +S ++P ++G TG+GKS++L +L E+
Sbjct: 653 SERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI 712
Query: 963 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 1022
GR+ + + + +PQ + + TVR N+ F E A L +A+ +
Sbjct: 713 SEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVS 759
Query: 1023 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1082
L+ + + GL+ ++ E G N S GQ+ +SL+RA+ + +LD+ +A+D
Sbjct: 760 QLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGE 819
Query: 1083 LI-QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 1121
+ ++ T ++ H+++ + D ++ L GRV
Sbjct: 820 RVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRV 859
|
Length = 1560 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 4e-13
Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 73/303 (24%)
Query: 285 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 342
I ++N ++ K E L N++++I G +AI+G TG GKT+ I + L P D
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--D 60
Query: 343 ASAV--------------------------------------IRGTVAYVPQVS--WIFN 362
+ IR V V Q + +F
Sbjct: 61 TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE 120
Query: 363 ATVRDNILFGS---------AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 413
T+ +I+FG A + A K I++ L D L +SG
Sbjct: 121 QTIEKDIIFGPVSMGVSKEEAKKRAA--KYIELVGL--DESYLQ--------RSPFELSG 168
Query: 414 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQL- 470
GQK+RV++A + D +FD+P + LD +++ + I L GKT +LVT+ L
Sbjct: 169 GQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE--IFDNLNKQGKTIILVTHDLD 226
Query: 471 HFLSQVDRIILVHEG-MVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE-KEDGETVDN 528
+ L R I +G ++K+ T++ LS+N L + ME K+ +V + ++ G V
Sbjct: 227 NVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPP-KLLNFVNKLEKKGIDVPK 285
Query: 529 KTS 531
TS
Sbjct: 286 VTS 288
|
Length = 305 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 4e-13
Identities = 54/227 (23%), Positives = 108/227 (47%), Gaps = 13/227 (5%)
Query: 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 967
SI+ + Y + L +SF VG +G GAGKS+ + + + + G +
Sbjct: 2 SIRVSSLTKLYGTQ--NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV 59
Query: 968 LIDGFDIAKFGLMDLRKILGIIPQ-SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 1026
+ G D+ + ++++ +G +P+ +P+ VR L F A ++ ++ LK
Sbjct: 60 QVCGEDVLQ-NPKEVQRNIGYLPEHNPLYLDMYVREYLQ-FI----AGIY-GMKGQLLKQ 112
Query: 1027 AIRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1084
+ +GL + + S G RQ + L++AL+ K+L+LDE T +D I
Sbjct: 113 RVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI 172
Query: 1085 QKTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEEL 1130
+ I+ K T+++ H + + CDR+++++ G+++ +EL
Sbjct: 173 RNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 5e-13
Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 26/211 (12%)
Query: 941 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF---- 996
++G +G GK+++L L + + G I++DG D+ LR I ++ QS LF
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRHI-NMVFQSYALFPHMT 58
Query: 997 -SGTVRFNLD----PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1051
V F L P +E + EAL L++ R L S GQ+
Sbjct: 59 VEENVAFGLKMRKVPRAE-IKPRVLEALRLVQLEEFADRKPHQL-----------SGGQQ 106
Query: 1052 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTII 1108
Q ++L+RAL+ + KIL+LDE +A+D + +Q KTI+E+ + + + +
Sbjct: 107 QRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMT 166
Query: 1109 DCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1139
DRI ++ G++ + TPEE+ + F
Sbjct: 167 MSDRIAIMRKGKIAQIGTPEEIYEEPANLFV 197
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 6e-13
Identities = 49/211 (23%), Positives = 90/211 (42%), Gaps = 35/211 (16%)
Query: 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYV 354
L +++L I G + + G +G GKT+L+ + G L P V R +
Sbjct: 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQL 74
Query: 355 P----QVSWIF-------NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLL 396
P ++ +F + TV +N+ R A+ L+H D
Sbjct: 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF 134
Query: 397 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 456
P +SGG++QRV++ARA+ ++ + + D+P LD + ++ D R
Sbjct: 135 PE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRL 183
Query: 457 ELSGKTRVLVTNQLHFLSQVD-RIILVHEGM 486
G T ++ T+ L + +V R+I++ +G
Sbjct: 184 NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 7e-13
Identities = 64/257 (24%), Positives = 104/257 (40%), Gaps = 54/257 (21%)
Query: 278 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA---ML 334
T +PAI +R+ + K L +INLDIP + A++G +G GK++L+ M
Sbjct: 1 ETMKIPAIEVRDLNLYYGDKH---ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57
Query: 335 GELPPVSDASAV----------------IRGTVAYVPQVSWIFNATVRDNILFG------ 372
+P V +R V V Q F ++ DN+ +G
Sbjct: 58 DLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGI 117
Query: 373 -SAFEPARYEKAIDVTSL----QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 427
E ++ +L + L + + +SGGQ+QR+ +ARA+
Sbjct: 118 KDKELDEIVESSLKKAALWDEVKDRLH-----------KSALGLSGGQQQRLCIARALAV 166
Query: 428 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQV----DRIILV 482
+V + D+P SALD + + I EL K T V+VT H + Q D
Sbjct: 167 KPEVLLMDEPTSALDP-ISTLKIEELIT-ELKKKYTIVIVT---HNMQQAARVSDYTAFF 221
Query: 483 HEGMVKEEGTFEDLSNN 499
+ G + E G + + N
Sbjct: 222 YLGELVEFGPTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 7e-13
Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 64/242 (26%)
Query: 285 ISIRNGYFSWD----SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG----- 335
+++RN ++ SK +INLDI G V VG +G GK++L+ + G
Sbjct: 4 VTLRNVTKAYGDVVISK-------DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT 56
Query: 336 ------------ELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPA----- 378
++PP ++ + A P +S V +N+ FG A
Sbjct: 57 SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLS------VAENMSFGLKLAGAKKEEI 110
Query: 379 --RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 436
R + +V L H LD P +SGGQ+QRV++ R + + VF+ D+
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKA-----------LSGGQRQRVAIGRTLVAEPSVFLLDE 159
Query: 437 PLSALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKE 489
PLS LDA + Q +R E+S G+T + VT +Q+ ++ D+I+++ G V +
Sbjct: 160 PLSNLDAALRVQ-----MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214
Query: 490 EG 491
G
Sbjct: 215 VG 216
|
Length = 369 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 7e-13
Identities = 66/244 (27%), Positives = 117/244 (47%), Gaps = 26/244 (10%)
Query: 909 IKFEDVVLRYRPEL-------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 961
++ DV YR PVL +S +I + VG++GR+G GKS++ L + +
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 962 LERGRILIDGFDIAKF---GLMDLRKILGIIPQ---SPVLFSGTVRFNL-DPFSEHSDAD 1014
+G + G D+ + R+ + ++ Q S V TVR + +P + D
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLD 122
Query: 1015 LWEALER-AHLKDAIRRNSLGLDAQVSEA-GENFSVGQRQLLSLSRALLRRSKILVLDEA 1072
E R A L D + GL ++ ++ S GQ Q ++++RAL + K++VLDEA
Sbjct: 123 ESEQKARIAELLDMV-----GLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEA 177
Query: 1073 TAAVDVRTDALI---QKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1128
+ +D+ A+I + +++ F L I H L + C R+ ++D G+++E
Sbjct: 178 VSNLDMVLQAVILELLRKLQQAF-GTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVA 236
Query: 1129 ELLS 1132
+LLS
Sbjct: 237 QLLS 240
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 8e-13
Identities = 59/233 (25%), Positives = 113/233 (48%), Gaps = 41/233 (17%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 978
++ +S I ++G +G GKS+ L ++ R+ +L G IL +G +I +
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 979 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 1021
+++LR+ +G++ Q P F ++ N LD E S A LW+
Sbjct: 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD---- 152
Query: 1022 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1081
+KD + ++L L S GQ+Q L ++R L + +L+LDE +A+D ++
Sbjct: 153 -EVKDRLHSSALSL-----------SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISN 200
Query: 1082 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
A I++ I E + +++I+ H + + DR +G ++EYD E++ ++
Sbjct: 201 AKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253
|
Length = 268 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 8e-13
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 31/228 (13%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 978
L ++ I + +G +G GKS++L T R+ EL G IL+DG +I K
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 979 LMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDADLWE----ALERAHL----KD 1026
+ LR +G++ Q P F + + F + F + S A++ E AL +A L KD
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD 148
Query: 1027 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1086
+ ++ L S GQ+Q L ++R + R ++L+LDE +A+D + I++
Sbjct: 149 KLHQSGYSL-----------SGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE 197
Query: 1087 TIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1133
I E + T++I+ H + C D + G ++E+ + + +
Sbjct: 198 LITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTK 245
|
Length = 260 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 9e-13
Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 33/206 (16%)
Query: 307 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----IRGTVAYVPQVSWIFN 362
+L++ G +VAI+G +G GK++L++ + G + P S + V G Y VS +F
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 363 A-------TVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 408
TVR NI G +A + + A + LD LP
Sbjct: 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE---------- 127
Query: 409 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK--TRVLV 466
+SGGQ+QRV++AR + + + + D+P SALD + R+ ++ S + T ++V
Sbjct: 128 -QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLL-REEMLALVKQLCSERQRTLLMV 185
Query: 467 TNQLHFLSQV-DRIILVHEGMVKEEG 491
T+ L + +I +V +G +K
Sbjct: 186 THHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 9e-13
Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 15/198 (7%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
+ LSFT+ + + I G GAGK+++L L ++ + G + G I +
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQ 75
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQV 1039
+L + Q + T NL + + A +WEAL + L D V
Sbjct: 76 ALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-------EDLPV 128
Query: 1040 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 1099
S GQ++ ++L+R L + + +LDE A+D AL+ + +++
Sbjct: 129 G----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVL 184
Query: 1100 IAHRLNTIIDCDRILLLD 1117
+ I +I LD
Sbjct: 185 LTTHQPLPIASAQIRRLD 202
|
Length = 209 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 9e-13
Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 41/218 (18%)
Query: 941 IVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI-AKF-GLMDLRKILGIIPQSP 993
I+G +G GKS+ L + R+ +L G ++ DG DI KF + LRK +G++ Q P
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129
Query: 994 VLFSGTVRFN---------------LDPFSEHS--DADLWEALERAHLKDAIRRNSLGLD 1036
F ++ N L+ E S A LW+ + D + +N+LGL
Sbjct: 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-----EVSDRLDKNALGL- 183
Query: 1037 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 1096
S GQ+Q L ++R L +IL+LDE T+A+D + A I+ I+E S T
Sbjct: 184 ----------SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYT 233
Query: 1097 MLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1133
++I+ H + D + G ++E+ +L +N
Sbjct: 234 IMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 66/228 (28%), Positives = 96/228 (42%), Gaps = 38/228 (16%)
Query: 296 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-----------PPVSDAS 344
S A R L ++LD+ G ++AI+G G GK++L+ A+ GEL P++
Sbjct: 10 SLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWP 69
Query: 345 AVIRGTV-AYVPQVSWI-FNATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLLP 397
A +PQ S + F TV++ + G S EP E+ DL L
Sbjct: 70 PEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 398 GGDVTEIGERGVNISGGQKQRVSMAR------AVYSNSDVFIFDDPLSALDAHVGRQVFD 451
G D +SGG++QRV +AR + D+P SALD
Sbjct: 130 GRDYRT-------LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL- 181
Query: 452 RCIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFED 495
R R VL LH L+ DRI+L+H+G V G+ +D
Sbjct: 182 RLARQLAREGGAVLAV--LHDLNLAAQYADRIVLLHQGRVIASGSPQD 227
|
Length = 259 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS------------DASAV 346
++ L +I+L + G + +G G GKT+ + +LG + P S + A+
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL 71
Query: 347 IR-GTVAYVPQVSWIFNATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDVT 402
R G + P + N T R+N+ + R ++ +DV L+ G
Sbjct: 72 RRIGALIEAP--GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKG--- 126
Query: 403 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 462
S G KQR+ +A A+ N D+ I D+P + LD +++ + + G T
Sbjct: 127 --------FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 463 RVLVTNQLHFLSQV-DRIILVHEGMVKEEG 491
++ ++ L + +V DRI ++++G + EEG
Sbjct: 179 VLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 68/223 (30%), Positives = 116/223 (52%), Gaps = 35/223 (15%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAML----GEL----PPVSDASAV--- 346
L NI+L+I G +V I+G +G GK++L I+ + G+L V+D
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74
Query: 347 IRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 405
IR V Q ++F + T +N++FG P R A + + +LL ++G
Sbjct: 75 IRQEAGMVFQQFYLFPHLTALENVMFG----PLRVRGASKEEAEKQARELL-----AKVG 125
Query: 406 --ERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 459
ER +SGGQ+QRV++ARA+ + +FD+P SALD + +V + ++ +L+
Sbjct: 126 LAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVL-KVMQ-DLA 183
Query: 460 --GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
G T V+VT+++ F +V R+I + +G + E+G + L N
Sbjct: 184 EEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226
|
Length = 240 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 33/210 (15%)
Query: 294 WDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAY 353
++ L ++NL I G + AI+G +G GK++L++ ++G L + G
Sbjct: 5 SKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLN-IIGLLEKFDSGQVYLNGQETP 63
Query: 354 VP-----------QVSWIF-------NATVRDNILFGSAFEP---ARYEKAIDVTSLQHD 392
++ ++F N TV +N+ G ++ + +
Sbjct: 64 PLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG 123
Query: 393 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 452
L+L + E+ SGG++QRV++ARA+ + + D+P +LD +V D
Sbjct: 124 LNLKLKQKIYEL-------SGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLD- 175
Query: 453 CIRGEL--SGKTRVLVTNQLHFLSQVDRII 480
+ EL GKT ++VT+ Q DR+I
Sbjct: 176 -LLLELNDEGKTIIIVTHDPEVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 48/237 (20%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI-----LID--------- 970
VLHG+ + P + V I+G +G+GK+++L + + + E G I ID
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 971 ----------GFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE 1020
GF F L R +L I + PV+ G + + A
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPK------------EEATARA 125
Query: 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1080
R L +GL + + S GQ+Q ++++RAL R ++++ DE T+A+D
Sbjct: 126 RELLA------KVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPEL 179
Query: 1081 DALIQKTIR---EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
+ TIR +E + TM+I+ H ++ D DR + +D GR++E + L ++
Sbjct: 180 VGEVLNTIRQLAQEKR--TMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234
|
Length = 250 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 53/214 (24%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 344
++ RNG+ + L + + +P GS+ A+VG G GK++L A++G + S
Sbjct: 14 VTWRNGHTA---------LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI 64
Query: 345 AVI---------RGTVAYVPQ---VSWIFNATVRDNILFG-----------SAFEPARYE 381
+++ + VAYVPQ V W F V D ++ G +
Sbjct: 65 SILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVT 124
Query: 382 KA---IDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 438
A +D+ +H +IGE +SGGQK+RV +ARA+ V + D+P
Sbjct: 125 AALARVDMVEFRH----------RQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPF 170
Query: 439 SALDAHVGRQVFD--RCIRGELSGKTRVLVTNQL 470
+ +D ++ R +R E GKT ++ T+ L
Sbjct: 171 TGVDVKTEARIISLLRELRDE--GKTMLVSTHNL 202
|
Length = 272 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 39/208 (18%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTVA 352
+++L + G ++AI+G +G GKT+L+ A+ G + S I + VA
Sbjct: 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVA 84
Query: 353 YVPQVS-WIFNATVRDNILFGSAF-----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 406
YV Q + TVR+ + + + K L DL L G G
Sbjct: 85 YVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG-----GN 139
Query: 407 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH----VGRQVFDRCIRGELSGKT 462
ISGG+++RVS+A + + V I D+P S LD+ + + R +
Sbjct: 140 LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRI---- 195
Query: 463 RVLVTNQLH-----FLSQVDRIILVHEG 485
V++T +H DRI+L+ G
Sbjct: 196 -VILT--IHQPRSDLFRLFDRILLLSSG 220
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 55/228 (24%), Positives = 106/228 (46%), Gaps = 40/228 (17%)
Query: 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------- 346
+ L +++L I G VA++G +G GK++L+ + G + P S + +
Sbjct: 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKAL 73
Query: 347 --IRGTVAYVPQ-VSWIFNATVRDNILFGSA------------FEPARYEKAIDVTSLQH 391
+R + + Q + I +V +N+L G F ++A+
Sbjct: 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRAL------A 127
Query: 392 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 451
L+ + G + + +R +SGGQ+QRV++ARA+ + + D+P+++LD RQV D
Sbjct: 128 ALERV--GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185
Query: 452 --RCIRGELSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDL 496
+ I E G T ++ +Q+ DRI+ + +G + +G +L
Sbjct: 186 LLKRINREE-GITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 33/199 (16%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 364
++ I G + +VG +G GK++L +LG P S G + +F
Sbjct: 31 GVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS-------GEI--------LFEG- 74
Query: 365 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMAR 423
+D R + ++ L E R + +SGGQ+QR+ +AR
Sbjct: 75 -KDITKLSKEERRERVLELLEKVGLP-----------EEFLYRYPHELSGGQRQRIGIAR 122
Query: 424 AVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRII 480
A+ N + + D+P+SALD V Q+ + + ++ EL G T + +++ L + + DRI
Sbjct: 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL-GLTYLFISHDLSVVRYISDRIA 181
Query: 481 LVHEGMVKEEGTFEDLSNN 499
+++ G + E G E++ +N
Sbjct: 182 VMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 39/214 (18%)
Query: 307 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-----TVAYVPQVSWIF 361
+L +P G +VAI+G +G GK++L++ + G P S +I G + VS +F
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPAS-GEILINGVDHTASPPAERPVSMLF 77
Query: 362 -------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 407
+ TV NI G +A + + E A L L LPG
Sbjct: 78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG--------- 128
Query: 408 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ----VFDRCIRGELSGKTR 463
+SGGQ+QRV++AR + + + D+P SALD + + V C T
Sbjct: 129 --ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE---RKMTL 183
Query: 464 VLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 496
++VT+ +++ DR++ + G + +G+ ++L
Sbjct: 184 LMVTHHPEDAARIADRVVFLDNGRIAAQGSTQEL 217
|
Length = 231 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 2e-12
Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 20/218 (9%)
Query: 296 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDAS 344
+ L ++L + GSLV +VG G GKT+L+ A+ G L P V S
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 345 AVIRG-TVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKA--IDVTSLQHDLDLLPGGD 400
A VA VPQ S F VR + G +R++ D +++ ++
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAME---RTG 128
Query: 401 VTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 459
V + +R V ++SGG++QRV +ARA+ + V + D+P ++LD + + + R
Sbjct: 129 VAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 460 GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 496
GKT V + L ++ D ++L+ +G V+ G D+
Sbjct: 189 GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226
|
Length = 402 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-12
Identities = 65/268 (24%), Positives = 116/268 (43%), Gaps = 36/268 (13%)
Query: 867 ASLAENSLNAVERVGNYIEL--PSEAPLVIESNRPPPGWPSSGS-IKFEDVVLRYRPELP 923
A A++ + +E++ + P E + PPPG ++FE+V Y
Sbjct: 277 AKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGY-DGGR 335
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
+L LSF I D++ IVG GAGKS++L L + G + K G
Sbjct: 336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV--------KVGE---T 384
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDA--DLWEALERAHLKDAIRRNSLGLDA-QVS 1040
+G Q + + E S+ D E RA+L G
Sbjct: 385 VKIGYFDQH----RDELDPDKTVLEELSEGFPDGDEQEVRAYLGR------FGFTGEDQE 434
Query: 1041 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 1100
+ S G++ L L++ LL+ +L+LDE T +D+ + +++ + +F+ T+L++
Sbjct: 435 KPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL-LDFEG-TVLLV 492
Query: 1101 AH-R--LNTIIDCDRILLLDSGRVLEYD 1125
+H R L+ + RI L++ +V E++
Sbjct: 493 SHDRYFLDRV--ATRIWLVE-DKVEEFE 517
|
Length = 530 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 45/225 (20%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----------------DASAVIR 348
+++LD+ G + I+G +G GK++L+ + + P S + + R
Sbjct: 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRR 101
Query: 349 GTVAYVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGD 400
++ V Q + + TV +N+ FG A R +A+++ L+ P
Sbjct: 102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD-- 159
Query: 401 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GEL 458
+SGG +QRV +ARA+ + D+ + D+ SALD + R++ D +R EL
Sbjct: 160 ---------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL 210
Query: 459 SGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNN 499
KT V +T H L + DRI ++ +G + + GT E++ N
Sbjct: 211 -QKTIVFIT---HDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 44/216 (20%)
Query: 916 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--FRIVELERGRILIDGFD 973
L +L G++ TI + ++G G+GKS++ T+ E+ G IL G D
Sbjct: 6 LHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGED 65
Query: 974 IAKFGLMDLRKILGII--PQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 1031
I + R LGI Q P G V+ D +R
Sbjct: 66 ITDL-PPEERARLGIFLAFQYPPEIPG-VK----------------------NADFLR-- 99
Query: 1032 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 1091
E FS G+++ + + LL + +LDE + +D+ L+ + I +
Sbjct: 100 ---------YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI-NK 149
Query: 1092 FKS--CTMLIIAH--RLNTIIDCDRILLLDSGRVLE 1123
+ ++LII H RL I DR+ +L GR+++
Sbjct: 150 LREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK 185
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 54/224 (24%), Positives = 103/224 (45%), Gaps = 25/224 (11%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 346
E + ++N + G AIVG TG GK++LI + L P + V
Sbjct: 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78
Query: 347 ----IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAID-VTSLQHDLDLLPGG 399
+R + V Q S +F TV I+FG P ++ +D V + H L + G
Sbjct: 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFG----PKNFKMNLDEVKNYAHRLLMDLGF 134
Query: 400 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL- 458
+ + +SGGQ +++++ + N D+ + D+P + LD RQV +
Sbjct: 135 SRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD 194
Query: 459 SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 501
KT +LV++ ++ +++ D +I++ EG + + + ++L + +
Sbjct: 195 ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-12
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 26/129 (20%)
Query: 327 TSLISAMLGELPPVS-------------DASAVIRGTVAYVPQVSWIF-NATVRDNILFG 372
++L+ + G L P S + ++R + V Q +F TVR+N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 373 SAFEP--ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 430
+ AR E+A++ L LD P G +SGGQKQRV++ARA+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 431 VFIFDDPLS 439
+ + D+P +
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 3e-12
Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 22/231 (9%)
Query: 913 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG- 971
D+ RY+ E PVL GL+ S G+VG G GKS++ L ++ ++G +L G
Sbjct: 6 DLWFRYQDE--PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK 63
Query: 972 -FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA--I 1028
D +K GL+ LR+ + + Q P F D+D+ +L + +A
Sbjct: 64 PLDYSKRGLLALRQQVATVFQDP---------EQQIFYTDIDSDIAFSLRNLGVPEAEIT 114
Query: 1029 RR--NSLGL-DAQ--VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1083
RR +L L DAQ + + S GQ++ ++++ AL+ +++ L+LDE TA +D
Sbjct: 115 RRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQ 174
Query: 1084 IQKTIREEFKSCTMLII-AHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132
+ IR +II +H ++ I + D + +L G++L + P E+ +
Sbjct: 175 MIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
|
Length = 271 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 64/216 (29%), Positives = 98/216 (45%), Gaps = 29/216 (13%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
L G+SFTI + VG +G GAGK++ L L +++ G + + G K LR
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLR 94
Query: 984 KILGIIPQS-------PVLFSGTVR---FNLDPFSEHSDAD-LWEALERAHLKDAIRRNS 1032
+I + Q PV+ S + ++L P D L E L+ L
Sbjct: 95 RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-------- 146
Query: 1033 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 1092
LD V S+GQR ++ ALL +IL LDE T +DV I+ ++E
Sbjct: 147 --LDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200
Query: 1093 K--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125
+ T+L+ +H + I R+L++D GR+L YD
Sbjct: 201 RERGTTVLLTSHYMKDIEALARRVLVIDKGRLL-YD 235
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 39/182 (21%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 358
R ++ + G + + G G GKT+L+ + G LPP + GT+
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA-------GTIKLDGGDI 66
Query: 359 WIF------------NA-----TVRDNILFGSAF---EPARYEKAIDVTSLQHDLDLLPG 398
NA TV +N+ F +AF E A++ L L P
Sbjct: 67 DDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-PF 125
Query: 399 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 458
G +S GQK+RV++AR + SN ++I D+P +ALDA +F IR L
Sbjct: 126 G----------YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA-AVALFAELIRAHL 174
Query: 459 SG 460
+
Sbjct: 175 AQ 176
|
Length = 207 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 4e-12
Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 13/206 (6%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 982
L ++ IP IVG+ G GKSS+L + ++ G++ + ++
Sbjct: 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATR 74
Query: 983 ---RKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLD 1036
R + Q P L + TV N+ PF++ + +A L+ I G
Sbjct: 75 SRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDA---CSLQPDIDLLPFGDQ 131
Query: 1037 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQKTIREEFK-- 1093
++ E G N S GQRQ + ++RAL + + I+ LD+ +A+D+ +D L+Q+ I + +
Sbjct: 132 TEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDD 191
Query: 1094 SCTMLIIAHRLNTIIDCDRILLLDSG 1119
T++++ H+L + D I+ + G
Sbjct: 192 KRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 4e-12
Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 47/229 (20%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRGTV 351
+++ + G + ++G G GKT+L + + G L P S + R +
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77
Query: 352 AYVPQVSWIF-NATVRDNILFG--------------SAFEPARYEKA---IDVTSLQHDL 393
Q+ +F TV +N++ E E+A ++ L
Sbjct: 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLA 137
Query: 394 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 453
D G +S GQ++R+ +ARA+ ++ + + D+P + L +
Sbjct: 138 DRPAG-----------ELSYGQQRRLEIARALATDPKLLLLDEPAAGL-NPEETEELAEL 185
Query: 454 IRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
IR EL G T +LV + + + + DR+ ++ +G V EGT +++ NN
Sbjct: 186 IR-ELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 4e-12
Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 60/193 (31%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 364
++L + G + A++G G GK++L+ + G P S G +
Sbjct: 18 GVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS-------GEI------------- 57
Query: 365 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI----SGGQKQRVS 420
++ G A A G+ + S G++Q V
Sbjct: 58 ----LVDGKEVSFASPRDARR---------------------AGIAMVYQLSVGERQMVE 92
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-- 476
+ARA+ N+ + I D+P +AL ++F IR L G + ++ H L +V
Sbjct: 93 IARALARNARLLILDEPTAALTPAEVERLFKV-IR-RLRAQGVAVIFIS---HRLDEVFE 147
Query: 477 --DRIILVHEGMV 487
DR+ ++ +G V
Sbjct: 148 IADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 4e-12
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 16/181 (8%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
+ GLSFT+ + + + G G+GK+++L + ++ G I +DG DI + +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEAL---ERAHLKDAIRRNSLGLDAQVS 1040
LG ++ + + TV NL+ W A E + A+ ++GL
Sbjct: 76 HYLG--HRNAMKPALTVAENLE---------FWAAFLGGEELDIAAAL--EAVGLAPLAH 122
Query: 1041 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 1100
S GQ++ ++L+R L+ I +LDE TAA+D AL + IR ++I
Sbjct: 123 LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIA 182
Query: 1101 A 1101
A
Sbjct: 183 A 183
|
Length = 207 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 4e-12
Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 29/157 (18%)
Query: 304 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVI----- 347
L +NL +P + AI G +G GKTSLI+A+ G P + DA I
Sbjct: 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE 74
Query: 348 RGTVAYVPQVSWIF-NATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 405
+ + YV Q + +F + VR N+ +G + A+++K + + ++ LD PG
Sbjct: 75 KRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPG------- 127
Query: 406 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442
++SGG+KQRV++ RA+ + ++ + D+PL++LD
Sbjct: 128 ----SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 4e-12
Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 42/253 (16%)
Query: 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 967
+IK +D+ Y + G+S I + I+G +G GKS+ + TL RI ELE G +
Sbjct: 7 AIKVKDLSFYYNTS--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE-GPV 63
Query: 968 LIDGFDIAKFG---------LMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDAD 1014
++G + FG + LR+ +G++ Q P F + V + + ++ AD
Sbjct: 64 KVEG-VVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQAD 122
Query: 1015 LWEALERA--------HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1066
L E +E A +KD + +++LGL S GQ+Q L ++RAL + K+
Sbjct: 123 LDEIVESALKGAALWQEVKDKLNKSALGL-----------SGGQQQRLCIARALAIKPKV 171
Query: 1067 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDSGRV-- 1121
L++DE +A+D +++ I T+ I+ H + + D D R+
Sbjct: 172 LLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQ 231
Query: 1122 -LEYDTPEELLSN 1133
+E+ ++ SN
Sbjct: 232 MVEFGVTTQIFSN 244
|
Length = 259 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 59/228 (25%), Positives = 111/228 (48%), Gaps = 31/228 (13%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKFG 978
L+ +S P++ ++G +G+GKS++L ++ R+ +L G I+ +G +I +
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 979 LMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDADLWEALERA--------HLKD 1026
+DLRK +G++ Q P F + V + L L EA+E++ +KD
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD 140
Query: 1027 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1086
+ ++LGL S GQ+Q + ++R L KI++LDE T+A+D + I++
Sbjct: 141 RLHDSALGL-----------SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEE 189
Query: 1087 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
T+ TML++ + DR G ++EY+ +++ N
Sbjct: 190 TLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237
|
Length = 252 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 4e-12
Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 32/244 (13%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER---- 964
IK E++ L Y + L +S IP + ++G +G GKS+ + L R+ +L +
Sbjct: 13 IKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI 70
Query: 965 -GRILIDGFDIAKFGL--MDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER 1021
G++ I+G DI + + ++LRK +G++ Q P F P S + + +
Sbjct: 71 EGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF---------PMSIYDNVAYGPRIHG 121
Query: 1022 AHLKD--AIRRNSLGLDAQVSEAGE-------NFSVGQRQLLSLSRALLRRSKILVLDEA 1072
A+ KD + N+L A E + + S GQ+Q L ++R L + KI++ DE
Sbjct: 122 ANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEP 181
Query: 1073 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDSGRVLEYDTPEE 1129
T+A+D + A I+ I K T++I+ H + I D L+ G ++E+ +
Sbjct: 182 TSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLM--GELIEFGQTRQ 239
Query: 1130 LLSN 1133
+ N
Sbjct: 240 IFHN 243
|
Length = 258 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 4e-12
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 18/219 (8%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ + + Y E P +H T + IVG +G+GKS++LN + + GR+L
Sbjct: 1 VRLDKIRFSYG-EQP--MH-FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL 56
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 1027
I+G D+ D + + ++ Q LF+ TV N+ S A +R ++ A
Sbjct: 57 INGVDVTAAPPAD--RPVSMLFQENNLFAHLTVEQNVG--LGLSPGLKLTAEDRQAIEVA 112
Query: 1028 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTD--AL 1083
+ R +GL S G+RQ ++L+R L+R +L+LDE AA+D +R + L
Sbjct: 113 LAR--VGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL 170
Query: 1084 IQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRV 1121
+ E T+L++ H+ R++ LD+GR+
Sbjct: 171 VLDLHAE--TKMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 34/242 (14%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
+K D+ Y LP + T+ ++V I+G +GAGKS++LN + + G +
Sbjct: 2 LKLTDITWLYH-HLP--MR-FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLT 57
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFN----LDPFSEHSDADLWEALERAH 1023
++G D R+ + ++ Q LFS TV N L+P + + A +R
Sbjct: 58 LNGQDHTT--TPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAA------QREK 109
Query: 1024 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTD 1081
L R+ +G++ ++ S GQRQ ++L+R L+R IL+LDE +A+D +R +
Sbjct: 110 LHAIARQ--MGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQE 167
Query: 1082 --ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRI----LLLDSGRVLEYDTP-EELLSNE 1134
L+ + +E + T+L+++H L D RI L++ GR+ +D P +ELLS +
Sbjct: 168 MLTLVSQVCQE--RQLTLLMVSHSLE---DAARIAPRSLVVADGRIA-WDGPTDELLSGK 221
Query: 1135 GS 1136
S
Sbjct: 222 AS 223
|
Length = 232 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 5e-12
Identities = 58/242 (23%), Positives = 112/242 (46%), Gaps = 28/242 (11%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+ E+V Y + L G+S I + ++G +G GK+++L + G IL
Sbjct: 1 IELENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDADLWEALERAH 1023
+DG DI L ++ + + Q+ LF + F L L +A +
Sbjct: 59 LDGKDIT--NLPPHKRPVNTVFQNYALFPHLTVFENIAFGL------RLKKLPKAEIKER 110
Query: 1024 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1083
+ +A+ + L+ + S GQ+Q ++++RAL+ K+L+LDE A+D++
Sbjct: 111 VAEALDL--VQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK---- 164
Query: 1084 IQKTIREEFKS------CTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 1136
++K ++ E K T + + H + + DRI +++ G++ + TPEE+ +
Sbjct: 165 LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPAN 224
Query: 1137 SF 1138
F
Sbjct: 225 RF 226
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 5e-12
Identities = 56/213 (26%), Positives = 105/213 (49%), Gaps = 32/213 (15%)
Query: 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IR 348
RP + +N+ + A +G G GKT+ +S + G LPP S V +R
Sbjct: 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVR 1002
Query: 349 GTVAYVPQVSWIFN-ATVRDNILF-----GSAFEPAR--YEKAIDVTSLQHDLDLLPGGD 400
++ PQ + +F+ TV ++ILF G ++E A+ E ++ T L H +
Sbjct: 1003 QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN------ 1056
Query: 401 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 460
E ++SGG ++++S+A A ++ V + D+P S +D + R ++D ++ SG
Sbjct: 1057 -----EEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SG 1110
Query: 461 KTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGT 492
+T ++ T+ + + DRI ++ +G + GT
Sbjct: 1111 RTIIMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 5e-12
Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 32/201 (15%)
Query: 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-----------R 348
R L +++L I G LV ++G +G GKT+L++ + G + P S S + R
Sbjct: 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-SRGSIQLNGRRIEGPGAER 76
Query: 349 GTV----AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
G V A +P W+ V DN+ FG EKA L L+
Sbjct: 77 GVVFQNEALLP---WL---NVIDNVAFGLQL--RGIEKAQRREIAHQMLALVGLEGAEH- 127
Query: 405 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTR 463
+ +SGG +QRV +ARA+ + + D+P ALDA Q+ + + + +GK
Sbjct: 128 -KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQV 186
Query: 464 VLVTNQLH---FLSQVDRIIL 481
+L+T+ + FL+ R+++
Sbjct: 187 LLITHDIEEALFLA--TRLVV 205
|
Length = 259 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 31/160 (19%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-----------V 351
L N++L++ G I+G TG GK+ L+ + G + P S ++ G +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS-GKILLNGKDITNLPPEKRDI 73
Query: 352 AYVPQVSWIF-NATVRDNILFG----SAFEPARYEKAIDVTSL---QHDLDLLPGGDVTE 403
+YVPQ +F + TV NI +G + K +++ + H L+ P
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE----- 128
Query: 404 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 443
+SGG++QRV++ARA+ N + + D+P SALD
Sbjct: 129 ------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDV 162
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 6e-12
Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 15/217 (6%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LR 983
LH +S I + V ++G GAGK+++L TL GRI+ DG DI + +R
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 984 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLW-EALERAHLKDAIRRNSLGLDAQVSE 1041
+ + I+P+ +FS TV NL ++ D + E ++ + + R + ++
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVY--ELFPRL---HERRIQR 134
Query: 1042 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI---REEFKSCTML 1098
AG S G++Q+L++ RAL+ + ++L+LDE + + I TI RE+ T+
Sbjct: 135 AG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ--GMTIF 191
Query: 1099 IIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
++ N + DR +L++G V+ DT + LL+NE
Sbjct: 192 LVEQNANQALKLADRGYVLENGHVVLEDTGDALLANE 228
|
Length = 237 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 7e-12
Identities = 56/220 (25%), Positives = 98/220 (44%), Gaps = 35/220 (15%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLI-----------------SAMLGELPPVSDASAVI 347
+ +L I G + I+G +G GK++ + + + PV + V
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPV-ELREVR 69
Query: 348 RGTVAYVPQVSWIF-NATVRDNILFGSAF----EPARYEKAIDVTSLQHDLDLLPGGDVT 402
R + V Q +F + T+ N G E R EKA L+LL +
Sbjct: 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKA---------LELLKLVGLE 120
Query: 403 EIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-G 460
E R + +SGG +QRV +ARA+ + D+ + D+ SALD + + D + + +
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 461 KTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN 499
KT V +T+ L + DRI+++ G + + GT +++ N
Sbjct: 181 KTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 7e-12
Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 45/216 (20%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---------------DASA 345
L IN+ I G V +VG +G GK++L+ + E P S A
Sbjct: 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 346 VIRGTVAYVPQVS-WIFNATVRDNILFGSAFE---------PARYEKAIDVTSLQHDLDL 395
+R + V Q + + V +N+ F A E R A+++ L H
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAF--ALEVTGVPPREIRKRVPAALELVGLSHKHRA 132
Query: 396 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 455
LP +SGG++QRV++ARA+ ++ + I D+P LD ++ + +
Sbjct: 133 LPAE-----------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK 181
Query: 456 GELSGKTRVLVTNQLHFLSQVD----RIILVHEGMV 487
+G T V+ T H VD R+I + G +
Sbjct: 182 INKAGTTVVVAT---HAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 7e-12
Identities = 55/196 (28%), Positives = 99/196 (50%), Gaps = 26/196 (13%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 977
V+ G+ IP + ++G +G GKS++L T R++EL G + + G +I
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 978 GLMDLRKILGIIPQSPVLFSGT---------VRFN--LDPFSEHSDADLWEALERAHLKD 1026
+++R+ +G++ Q P F V+ N + E + W AL++A L D
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEW-ALKKAALWD 137
Query: 1027 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1086
++ ++++ N S GQRQ L ++RAL + KIL++DE TA +D A I++
Sbjct: 138 EVKD-------RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEE 190
Query: 1087 TIREEFKSCTMLIIAH 1102
+ E K T++++ H
Sbjct: 191 LLFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 7e-12
Identities = 54/223 (24%), Positives = 108/223 (48%), Gaps = 22/223 (9%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VELER--GRILIDGFDI--AKFG 978
L +S IP + ++G +G GKS+ L + R+ ++ R G + G ++ A
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 979 LMDLRKILGIIPQSPVLFSGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNS 1032
+ LR+ +G++ Q P F ++ N + + D + E+L RA L D ++
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-- 172
Query: 1033 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 1092
Q+ +G + S GQ+Q L ++RA+ +++++DE +A+D + I+ I E
Sbjct: 173 -----QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227
Query: 1093 KSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSN 1133
+ T++I+ H + I + L G ++E+D +++ N
Sbjct: 228 EEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFEN 270
|
Length = 285 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 7e-12
Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 40/233 (17%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF-G 978
VL +S P ++G TG+GK++ L TL R+ + G +L+ G I +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 979 LMDLRKILGIIPQSPVLF---------SGTVRFNLDPFSEH--------SDADLWEALER 1021
+++ R+ +G++ Q P F +G L P E ++ LW+A+
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-- 153
Query: 1022 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1081
KD ++S++ S GQ+QLL L+R L ++L+LDE T+A+D T
Sbjct: 154 ---KD-----------RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTT 199
Query: 1082 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
I++ IR T++I+ H L DR L GR++E E+L S+
Sbjct: 200 EKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 7e-12
Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 41/233 (17%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 978
L ++ I ++ I+G +G GKS+ + TL R+VEL G+IL +I +
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 979 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 1021
+ +LR +G++ Q P F ++ N LD E S A +W+
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD---- 155
Query: 1022 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1081
LKD + N+ GL S GQ+Q L ++R L ++++DE T+A+D +
Sbjct: 156 -ELKDRLHDNAYGL-----------SGGQQQRLCIARCLAIEPDVILMDEPTSALDPIST 203
Query: 1082 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
+++ ++E K +++I+ H + D+ +G V EYD +++ SN
Sbjct: 204 LKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN 256
|
Length = 271 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 9e-12
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 276 PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 335
P+ P I ++N + + L +++ + G AIVG G GKT+L+S + G
Sbjct: 23 HPIEINEPLIELKNVSVR---RNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG 79
Query: 336 ELPPVSDASAV-------------IRGTVAYV-PQVSWIF--NATVRDNILFGSAFEPAR 379
E PP S + +R + V ++ F TVRD +L G
Sbjct: 80 EHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGI 139
Query: 380 YEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPL 438
Y++ + L LL + +R ++S G+++RV +ARA+ + ++ I D+P
Sbjct: 140 YQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA 199
Query: 439 SALD 442
LD
Sbjct: 200 QGLD 203
|
Length = 257 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 9e-12
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 24/218 (11%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF--RIVELERGRILIDGFDIAKFGLMD 981
+L G++ T+ + I+G G+GKS++ T+ E+ G IL G D+ + D
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL-EPD 72
Query: 982 LRKILGII--PQSPVLFSG--TVRFNLDPFSEHSDADLWEALERAHLKDAIRRN--SLGL 1035
R G+ Q P G + F + A E L+ ++ LG+
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM 132
Query: 1036 DAQVSEAGEN--FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL------IQKT 1087
D + N FS G+++ + + L K+ +LDE + +D+ DAL I +
Sbjct: 133 DEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDI--DALKIVAEGINR- 189
Query: 1088 IREEFKSCTMLIIAH--RLNTIIDCDRILLLDSGRVLE 1123
+RE +S LII H RL I D + +L GR+++
Sbjct: 190 LREPDRSF--LIITHYQRLLNYIKPDYVHVLLDGRIVK 225
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 9e-12
Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 50/220 (22%)
Query: 913 DVVLRYRP-ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 971
+ VL R + + +SF + + VGI G G G++ + LF + G I +DG
Sbjct: 2 EPVLEVRGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDG 61
Query: 972 FDIAKFGLMDLRKILGI--IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 1029
+ + D + GI +P+ +R +
Sbjct: 62 KPVTRRSPRDAIR-AGIAYVPE----------------------------DR-------K 85
Query: 1030 RNSLGLDAQVSEAGENFSVGQR------QLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1083
R L LD V EN ++ Q + L+R L R ++L+LDE T VDV A
Sbjct: 86 REGLVLDLSV---AENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAE 142
Query: 1084 IQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 1121
I + IRE + +L+I+ L+ ++ CDRIL++ GR+
Sbjct: 143 IYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 9e-12
Identities = 56/231 (24%), Positives = 115/231 (49%), Gaps = 37/231 (16%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSML------NTLFRIVELERGRILIDGFDI--AKF 977
L+ ++ I + ++G +G GKS+ L N L V++E G +L+DG +I
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIE-GEVLLDGKNIYDKDV 78
Query: 978 GLMDLRKILGIIPQSPVLFSGTVRFN------LDPFSEHSDAD--LWEALERAHL----K 1025
+++LRK +G++ Q P F ++ N + + + D + AL++A L K
Sbjct: 79 DVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK 138
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1085
D +++++L L S GQ+Q L ++R + + ++++DE T+A+D + I+
Sbjct: 139 DDLKKSALKL-----------SGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIE 187
Query: 1086 KTIREEFKSCTMLIIAHRL---NTIIDCDRILLLDSGRVLEYDTPEELLSN 1133
+ E K T++I+ H + + + D L+ G ++E++ E++
Sbjct: 188 DLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLM--GDLIEFNKTEKIFLE 236
|
Length = 251 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 49/210 (23%), Positives = 95/210 (45%), Gaps = 35/210 (16%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTV 351
L ++L + G + ++G G GKT+L+ + PP S + +R +
Sbjct: 16 LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRI 74
Query: 352 AYVPQ-VSWIFNATVR---DNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 407
Y+PQ N TVR D I + + +D L+L+ ++ + ++
Sbjct: 75 GYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEV-----LELV---NLGDRAKK 126
Query: 408 GVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVL 465
+ +SGG ++RV +A+A+ + + I D+P + LD R F R + EL + +L
Sbjct: 127 KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRF-RNLLSELGEDRIVIL 184
Query: 466 VTNQLHFLSQV----DRIILVHEGMVKEEG 491
T H + V +++ ++++G + EG
Sbjct: 185 ST---HIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 1e-11
Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 42/237 (17%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 346
E+ L N+N++I G V ++G TG GK++LI + G L P S +
Sbjct: 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKL 78
Query: 347 --IRGTVAYVPQVS--WIFNATVRDNILFG------SAFE-PARYEKAIDVTSLQHD--L 393
IR V V Q +F T+ +I FG S E R ++A+++ L ++
Sbjct: 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYK 138
Query: 394 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 453
D P +SGGQK+RV++A V + I D+P + LD GR
Sbjct: 139 DKSP-----------FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK-GRDEILNK 186
Query: 454 IRGELSGK---TRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGELFQKL 506
I+ EL + T +LV++ + +++ DRII++++G + +GT ++ E + +
Sbjct: 187 IK-ELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESI 242
|
Length = 287 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 30/217 (13%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-GRILIDG--FDIAKF---- 977
L ++ P + + ++G +GAGKSS+L L ++E+ R G + I G FD +K
Sbjct: 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVL-NLLEMPRSGTLNIAGNHFDFSKTPSDK 75
Query: 978 GLMDLRKILGIIPQSPVLFSG-TVRFNL--DPF------SEHSDADLWEALERAHLKDAI 1028
+ DLR+ +G++ Q L+ TV+ NL P + + A + L+R LK
Sbjct: 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA 135
Query: 1029 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1088
R L L S GQ+Q ++++RAL+ ++L+ DE TAA+D A I I
Sbjct: 136 DRYPLHL-----------SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184
Query: 1089 RE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1123
+E T +I+ H + R++ +++G ++E
Sbjct: 185 KELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221
|
Length = 242 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 28/160 (17%)
Query: 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----------PVSDASAVIR 348
+P L +INL + G L+ ++G +G GKT+L++ + G +P PV A R
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE-R 72
Query: 349 GTV----AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
G V +P W V+DN+ FG + A EK + L + +
Sbjct: 73 GVVFQNEGLLP---W---RNVQDNVAFG--LQLAGVEKMQRLEIAHQMLKKV---GLEGA 121
Query: 405 GERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 443
+R + +SGGQ+QRV +ARA+ +N + + D+P ALDA
Sbjct: 122 EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 60/232 (25%), Positives = 107/232 (46%), Gaps = 40/232 (17%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-----RILIDGFDI-AKFGL 979
L ++ IP ++G +G GKS++L L R+ +L G ++ +DG DI +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 980 MDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALERA 1022
DLR +G++ Q P F ++ N LD E S A LW+
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD----- 133
Query: 1023 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1082
+KD ++ ++ GL S GQ+Q L ++R + ++++DE T+A+D
Sbjct: 134 EVKDRLKSHAFGL-----------SGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATH 182
Query: 1083 LIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
I++ + E K+ T++I+ H + DR G ++E+D + + SN
Sbjct: 183 KIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234
|
Length = 249 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 41/233 (17%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 978
LH +S + ++G +G GKS+ L L R+ +L G IL+DG +I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 979 LMDLRKILGIIPQSPVLFSGTV--------RFN-------LDPFSEHS--DADLWEALER 1021
+++LR+ +G++ Q P F ++ R N L E S A LW+
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWD---- 137
Query: 1022 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1081
+KD + ++LGL S GQ+Q L ++RAL ++L++DE +A+D
Sbjct: 138 -EVKDRLHESALGL-----------SGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT 185
Query: 1082 ALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1133
I++ I E T++I+ H + D G+++E E++ +
Sbjct: 186 QKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238
|
Length = 253 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 41/238 (17%)
Query: 909 IKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
+K E++ RY+ VL G+S +I + V IVG +G+GKS++L+ L + G
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 967 ILIDGFDIAKFG---LMDLR-KILGIIPQ---------------SPVLFSGTVRFNLDPF 1007
+L +G ++K LR K LG I Q P+L
Sbjct: 62 VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSV------ 115
Query: 1008 SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1067
+ + +E LE+ L+ I + + SE S G+RQ ++++RAL+ + ++
Sbjct: 116 -KEAKERAYEMLEKVGLEHRI-------NHRPSE----LSGGERQRVAIARALVNQPSLV 163
Query: 1068 VLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1123
+ DE T +D +I + E + + L++ H L DR+L + G++
Sbjct: 164 LADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-11
Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 63/234 (26%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----------------VSDASAVIR 348
++L + G + A++G G GK++L+ + G PP DA A
Sbjct: 26 GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALA--A 83
Query: 349 GTVAYVPQ-VSWIFNATVRDNILFGSAFEP-------------ARYEKAIDVTSLQHDLD 394
G +A V Q +S + N +V +NI G EP R + + L D D
Sbjct: 84 G-IATVHQELSLVPNLSVAENIFLGR--EPTRRFGLIDRKAMRRRARELLARLGLDIDPD 140
Query: 395 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 454
L G ++S Q+Q V +ARA+ ++ V I D+P +AL ++FD I
Sbjct: 141 TLVG-----------DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-I 188
Query: 455 RGEL--SGKTRVLVTNQLHFLSQV----DRII------LVHEGMVKEEGTFEDL 496
R L G + ++ H L +V DRI +V E + ++L
Sbjct: 189 R-RLKAQGVAIIYIS---HRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDEL 238
|
Length = 500 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 2e-11
Identities = 69/271 (25%), Positives = 122/271 (45%), Gaps = 9/271 (3%)
Query: 871 ENSLNAVERVGNYIELPSEAPLVIES--NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG 928
E +L E + +E P + +S R PG +K ++V + P P +
Sbjct: 891 ERALEKTEPLTEEMEDPEHPEGINDSFFERELPGLVPGVCVK--NLVKIFEPSGRPAVDR 948
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988
L+ T + +G GAGK++ L+ L ++ G +L+ G DI + L +R+ LG+
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGM 1007
Query: 989 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 1048
PQ +LF F WE A L+ GL + +E ++ S
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWE---EAQLEMEAMLEDTGLHHKRNEEAQDLSG 1064
Query: 1049 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI- 1107
G ++ LS++ A + +K++VLDE T+ VD + I + + T+++ H ++
Sbjct: 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEAD 1124
Query: 1108 IDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
+ DRI ++ GR+ TP L + G+ F
Sbjct: 1125 LLGDRIAIISQGRLYCSGTPLFLKNCFGTGF 1155
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 61/223 (27%), Positives = 94/223 (42%), Gaps = 40/223 (17%)
Query: 295 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS------------- 341
+ E L + L + G VAIVG +G GK++L++ + G P S
Sbjct: 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKL 77
Query: 342 --DASAVIRG-TVAYVPQ-VSWIFNATVRDNILF-------GSAFEPARYEKAIDVTSLQ 390
DA A +R V +V Q I N T +N+ SA A + ++ L
Sbjct: 78 DEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG 137
Query: 391 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 450
L P +SGG++QRV++ARA DV D+P LD G ++
Sbjct: 138 KRLTHYPA-----------QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIA 186
Query: 451 DRCIRGELS---GKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 490
D + L+ G T VLVT+ ++ DR + + G + E+
Sbjct: 187 D--LLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227
|
Length = 228 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 43/223 (19%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLM 980
+L G+ + + V IVG +G+GKS++L L + + G + + G + K
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83
Query: 981 DLR-KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER----AHLKDAIRRNS--- 1032
LR + +G + QS F+L P ALE L+ +S
Sbjct: 84 ALRARHVGFVFQS---------FHLIPN--------LTALENVALPLELRGESSADSRAG 126
Query: 1033 -------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT----- 1080
+GL +++ S G++Q ++L+RA R +L DE T +D T
Sbjct: 127 AKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIA 186
Query: 1081 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1123
D L RE + T++++ H CDR L L SGR++E
Sbjct: 187 DLLFALN-RE--RGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 3e-11
Identities = 60/266 (22%), Positives = 125/266 (46%), Gaps = 15/266 (5%)
Query: 296 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML------GELP--PVSDASAVI 347
++A R L +++ + G V ++G TG GK++L+SA+L GE+ VS S +
Sbjct: 1228 TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTL 1287
Query: 348 ---RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
R +PQ +IF+ T R N+ + K + L+ ++ P +
Sbjct: 1288 QTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVL 1347
Query: 405 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 464
+ G +S G KQ + +AR++ S + + + D+P + LD V Q+ + ++ S T +
Sbjct: 1348 VDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDP-VTLQIIRKTLKQSFSNCTVI 1406
Query: 465 LVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGE 524
L +++ L + + +++ VK+ + + L N LF++ M A +++ + + +
Sbjct: 1407 LSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRLKLFPLHRRNSS 1466
Query: 525 TVDNKTSKPAANGVDNDLPKEASDTR 550
+ +P + + +E +TR
Sbjct: 1467 ---KRKPQPKITALREEAEEEVQNTR 1489
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 31/221 (14%)
Query: 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------ 347
R + ++L + G +V ++G G GKT+ ++G + P D+ ++
Sbjct: 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITKLPMH 70
Query: 348 ---RGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 403
R + Y+PQ + IF TV +NIL + E K L+ L+ +T
Sbjct: 71 KRARLGIGYLPQEASIFRKLTVEENIL--AVLEIRGLSKKEREEKLEELLEEF---HITH 125
Query: 404 IGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD-RCIRGELSGK 461
+ + ++SGG+++RV +ARA+ +N + D+P + +D V D + I L +
Sbjct: 126 LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIA---VQDIQKIIKILKDR 182
Query: 462 -TRVLVT--NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 499
VL+T N LS DR +++EG V EGT E+++ N
Sbjct: 183 GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 3e-11
Identities = 69/269 (25%), Positives = 120/269 (44%), Gaps = 38/269 (14%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 344
I ++N F + E+ TL +++ + G ++I+G G GK++ + + G L S
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 345 AV------------IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 390
+ IR + V Q + ATV D++ FG + +E+ +
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEM--KERVN 122
Query: 391 HDLDLLPGGDVTEIGERG-VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 449
L+L+ + + ER +SGGQKQRV++A AV + I D+ S LD GR
Sbjct: 123 EALELV---GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPE-GRLE 178
Query: 450 FDRCIRG--ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE------ 501
+ I+G + T + +T+ L ++ DR++++ G V+ T +L + G
Sbjct: 179 LIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGNDLLQLG 238
Query: 502 --------LFQKLMENAGKMEE-YVEEKE 521
L Q L +N + E Y+ EKE
Sbjct: 239 LDIPFTTSLVQSLRQNGYDLPEGYLTEKE 267
|
Length = 279 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 32/232 (13%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELP---- 338
+I + + + L +I LD P G + ++G +G GK+SL+ + L E+P
Sbjct: 2 SIQLNGINCFYGAHQ---ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 339 -------------PVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAI 384
P A +R V V Q ++ + TV+ N++ P R
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEA----PCRVLGLS 114
Query: 385 DVTSLQHDLDLLPGGDVTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 443
+L LL + +R +++SGGQ+QRV++ARA+ V +FD+P +ALD
Sbjct: 115 KDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 444 HVGRQVFDRCIRGELS--GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGT 492
+ Q+ I EL+ G T+V+VT+++ + R++ + G + E+G
Sbjct: 175 EITAQIVS--IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
|
Length = 242 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 4e-11
Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 33/224 (14%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------- 347
+R + +++L++ G +V ++G G GKT+ ++G + P D+ ++
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPM 73
Query: 348 ----RGTVAYVPQVSWIF-NATVRDNI-LFGSAFEPARY--EKAIDVTSLQHDLDLLPGG 399
R + Y+PQ + IF TV DNI E E+ ++ +L + +
Sbjct: 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR 133
Query: 400 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD-RCIRGEL 458
D + ++SGG+++RV +ARA+ +N + D+P + +D V D + I L
Sbjct: 134 D-----SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA---VIDIQRIIKHL 185
Query: 459 SGK-TRVLVT--NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 499
+ VL+T N L DR ++ +G V EG+ E++ NN
Sbjct: 186 KDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229
|
Length = 243 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 4e-11
Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 42/213 (19%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 358
E L +++ ++P G + ++G G GK++L+ + G PP S GTV +VS
Sbjct: 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS-------GTVTVRGRVS 86
Query: 359 WIF--------NATVRDNILFGSAF------EPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
+ T R+NI E I + +E+
Sbjct: 87 SLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEII--------------EFSEL 132
Query: 405 GERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS- 459
G+ S G K R++ A A D+ + D+ L+ DA + R +R L
Sbjct: 133 GDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRR-LRELLKQ 191
Query: 460 GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 491
GKT +LV++ + ++ DR +++ +G ++ +G
Sbjct: 192 GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 4e-11
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 47/230 (20%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAML------------------------GELP 338
L +N + G VA++G +G GK++++ ++ G L
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLV 75
Query: 339 PVSDAS-AVIRGTVAYVPQVSWIF-NATVRDNILFGS----AFEPARYEKA----IDVTS 388
P + +R + V Q +F + TV DN+ A EK +D+
Sbjct: 76 PADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVG 135
Query: 389 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 448
L D +P +SGGQ+QRV++ARA+ V +FD+ SALD + +
Sbjct: 136 LADKADHMP-----------AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184
Query: 449 VFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 496
V + R T +LVT+++ F + DR+ +G + E+G +++
Sbjct: 185 VLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-11
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 22/201 (10%)
Query: 313 GSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAVIRGTV----------AYVPQVSWI 360
G L+A++G +G GKT+L++A+ P S ++ G AYV Q
Sbjct: 51 GELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLF 110
Query: 361 FNA-TVRDNILFGSAFE-PARY---EKAIDVTSLQHDLDLLPGGDVTEIGERGV--NISG 413
TVR++++F + P R EK V + L L + T IG G +SG
Sbjct: 111 IPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN-TRIGVPGRVKGLSG 169
Query: 414 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ--LH 471
G+++R++ A + ++ + D+P S LD+ + V GKT + +Q
Sbjct: 170 GERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSE 229
Query: 472 FLSQVDRIILVHEGMVKEEGT 492
D+IIL+ EG V G+
Sbjct: 230 LFELFDKIILMAEGRVAYLGS 250
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 4e-11
Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 37/227 (16%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRI----LIDGFDIAKFGLMDL 982
L+F++ + +GIVG +G+GKS T F ++ L GRI +G +I +L
Sbjct: 35 LNFSLRAGETLGIVGESGSGKS---QTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91
Query: 983 RKI----LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEAL---ERAHLKDAIRRNSLGL 1035
K+ + +I Q P+ +L+P+ + L E L + +A + L
Sbjct: 92 NKLRAEQISMIFQDPMT-------SLNPYMRVGE-QLMEVLMLHKGMSKAEAFEESVRML 143
Query: 1036 DA-QVSEAGE-------NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1087
DA ++ EA + FS G RQ + ++ ALL R K+L+ DE T A+DV A I
Sbjct: 144 DAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL 203
Query: 1088 IRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130
+ E EF + +++I H L + CD++L++ +GR +EY ++
Sbjct: 204 LNELKREFNT-AIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249
|
Length = 330 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 4e-11
Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 41/233 (17%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-----RILIDGFDI--AKFG 978
L+ ++ I + ++G +G GKS+ L TL R+ +L G ++ +G +I F
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 979 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 1021
+++LR+ +G++ Q+P F ++ N LD E S + LW
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWN---- 138
Query: 1022 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1081
+KD + N+L L S GQ+Q L ++R L ++++DE T+A+D +
Sbjct: 139 -EVKDKLNTNALSL-----------SGGQQQRLCIARTLAIEPNVILMDEPTSALDPIST 186
Query: 1082 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
I++ I +S T++I+ H + DR +G + E + +EL N
Sbjct: 187 GKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239
|
Length = 254 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 5e-11
Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 30/232 (12%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--FRIVELERGRILIDGFDIAKFGLMD 981
+L G++ T+ + I+G G+GKS++ T+ E+ G IL DG DI +
Sbjct: 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL-----E 72
Query: 982 L------RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS--L 1033
L R + + Q PV G V N D +A ++ + L
Sbjct: 73 LSPDERARAGIFLAFQYPVEIPG-VT-NSDFLRAAMNARRGARGILPEFIKELKEKAELL 130
Query: 1034 GLDAQVSE--AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL--IQKTIR 1089
GLD + E E FS G+++ + + LL K+ +LDE + +D+ DAL + + I
Sbjct: 131 GLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI--DALKIVAEGI- 187
Query: 1090 EEFKS--CTMLIIAH--RLNTIIDCDRILLLDSGRVLEYDTPE--ELLSNEG 1135
+ +LII H RL I D++ +L GR+++ PE E L +G
Sbjct: 188 NALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEELEEKG 239
|
Length = 251 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 5e-11
Identities = 105/515 (20%), Positives = 196/515 (38%), Gaps = 41/515 (7%)
Query: 631 SLLSFGQV-LVTLANSYWLIISSLYAAKR----LHDAMLHSILRAPMVFFHTNPLGRIIN 685
SL SFG + L+ L I YA L A+ IL AP+ +I
Sbjct: 55 SLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIP 114
Query: 686 RFAKDLGDIDR------NVAVFVNMFMGQVSQL--LSTFVLIGIVSTMSLWAIMPLLLLF 737
D+ I+ +A+ + +F ++ L LS + +S + + LL F
Sbjct: 115 LLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAA-QLLAF 173
Query: 738 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNI 797
+ ++ + E + T + + ++G+ R A+ + + D +I
Sbjct: 174 MGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIR--RLSFAHGAIQESANNIADLHI 231
Query: 798 RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNIT 857
L+ + A + + ++ G ++ A FA + + A + LL Y
Sbjct: 232 IEILIFIAAENFGQLLFFLLIGCALFAAAMFASIDAAAIS-----AFVLALL--YIKGPL 284
Query: 858 SLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP--SSGSIKFEDVV 915
+L + L + + A+ + + G P + +++ S SI+ +DV
Sbjct: 285 EMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDV- 343
Query: 916 LRYRPELPP-----VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 970
P+ P L + I D V IVG G GKS++ + + G IL+D
Sbjct: 344 -HMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLD 402
Query: 971 GFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR 1030
G ++ D R + I LF + + + +A + L+R + D ++
Sbjct: 403 GAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQY--LQRLEIADKVKI 460
Query: 1031 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1090
G + S GQ++ L+L A L IL+ DE A D + +
Sbjct: 461 EDGGFSTTTA-----LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515
Query: 1091 EFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1123
+ K T++II+H D+I+ L +G +++
Sbjct: 516 DLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 5e-11
Identities = 73/277 (26%), Positives = 122/277 (44%), Gaps = 33/277 (11%)
Query: 230 SLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRN 289
SL+L LR PL + +++A V+ ++ + LA K P P + +RN
Sbjct: 269 SLTLL-FLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRN 327
Query: 290 GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML--GELPPVS-----D 342
F++ ++ INL I G L+ ++GG G GK++L AML G P S D
Sbjct: 328 VTFAYQ--DNGFSVGPINLTIKRGELLFLIGGNGSGKSTL--AMLLTGLYQPQSGEILLD 383
Query: 343 ASAVIRGT-VAYVPQVSWIFNATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLD 394
V Y S +F D LF G PA EK ++ + H L+
Sbjct: 384 GKPVTAEQPEDYRKLFSAVFT----DFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLE 439
Query: 395 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 454
L G ++ + +S GQK+R+++ A+ D+ + D+ + D H R+ F + +
Sbjct: 440 -LEDGRISNL-----KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHF-RREFYQVL 492
Query: 455 RGEL--SGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 489
L GKT +++ H+ DR++ + G + E
Sbjct: 493 LPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 63/238 (26%), Positives = 110/238 (46%), Gaps = 48/238 (20%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLI-----------SAMLGELPPVSDASA----VI 347
L NINL+I G VAI+G +G GK++L+ ++L E ++ +
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 348 RGTVAYVPQ-VSWIFNATVRDNILFG------------SAFEPARYEKAIDVTSLQHDLD 394
R + + Q + I TV +N+L G F E+A+ L+
Sbjct: 78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA------LE 131
Query: 395 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--R 452
+ G + +R +SGGQ+QRV++ARA+ D+ + D+P+++LD +QV D +
Sbjct: 132 RV--GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLK 189
Query: 453 CIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKL 506
I E G T V++ LH + DRI+ + G + +G +L + E+ + +
Sbjct: 190 RINKED-GIT-VIIN--LHQVDLAKKYADRIVGLKAGEIVFDGAPSELDD--EVLRHI 241
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 6e-11
Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 41/221 (18%)
Query: 931 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 990
+ + +G++G GAGK+++L + ++ +G + + G K + +G +P
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 991 QS-------PVLFSGTVRFN----LDPFSEHSDAD---LWEALERAHLKDAIRRNSLGLD 1036
Q P+ + TV + AD + +AL R L + R
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR------ 109
Query: 1037 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC- 1095
GE S GQRQ + ++RAL R +L+LDE +D+ T Q+ + E F
Sbjct: 110 ----PVGE-LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT----QELLTELFIELA 160
Query: 1096 ----TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131
+L+ H L + CDR++LL+ GRV+ TP++L
Sbjct: 161 GAGTAILMTTHDLAQAMATCDRVVLLN-GRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 6e-11
Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 52/226 (23%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDG--FDIAKFGL 979
+L+ +S + + I+G +G+GK+++L+ + VE G+IL +G +F
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF-- 79
Query: 980 MDLRKILGIIPQSPVLFSG-TVRFNL---------DPFSEHSDADLWEALERAHLKDAIR 1029
+K + + Q +L G TVR L S+ E + L
Sbjct: 80 ---QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRI 136
Query: 1030 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 1089
+L + S G+R+ +S++ LL K+L+LDE T+ +D T + T+
Sbjct: 137 GGNLV---------KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS 187
Query: 1090 EEFKSCTMLIIAHRLNTIIDC-------------DRILLLDSGRVL 1122
+ +A R N I+ DRILLL SG ++
Sbjct: 188 Q---------LARR-NRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 7e-11
Identities = 53/225 (23%), Positives = 103/225 (45%), Gaps = 16/225 (7%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 344
I I + +++ +P L ++ I G V I G TG GK+SL A + + D
Sbjct: 20 IKIHDLCVRYENNL-KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFF-RMVDIFDGK 77
Query: 345 AVI-------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 391
VI R ++ + Q +F+ ++R N+ R +A+++ L++
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 392 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 451
+ LPGG + E G N S GQ+Q +ARA S + I D+ +++D +
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT-ENILQ 196
Query: 452 RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
+ + + +T V + +++ + D ++++ G++ E T E+L
Sbjct: 197 KVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENL 241
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 7e-11
Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 33/212 (15%)
Query: 306 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAYV 354
+N + G + +G G GKT+ I + L P S + V +R ++ V
Sbjct: 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIV 71
Query: 355 PQ-VSWIFNATVRDNILFGSAF----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 409
PQ S + T R+N+ + E+A + LL ++ E +R V
Sbjct: 72 PQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEE---------LLELFELGEAADRPV 122
Query: 410 -NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 468
SGG ++R+ +A ++ DV D+P + LD R ++D IR +L+T
Sbjct: 123 GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY-IRALKEEGVTILLTT 181
Query: 469 QLHFLSQV----DRIILVHEGMVKEEGTFEDL 496
H++ + DRI ++ G + EGT E+L
Sbjct: 182 --HYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 7e-11
Identities = 60/214 (28%), Positives = 109/214 (50%), Gaps = 35/214 (16%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTV-------- 351
N+NL I G++V ++G +G GKT+++ + G P D V ++
Sbjct: 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83
Query: 352 ----AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 407
A P +S + +N+ +G + K ++ L+L+ D+ +R
Sbjct: 84 FQSYALFPHMS------LGENVGYG--LKMLGVPKEERKQRVKEALELV---DLAGFEDR 132
Query: 408 GVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS---GKTR 463
V+ ISGGQ+QRV++ARA+ V +FD+PLS LDA++ R + ++ IR EL T
Sbjct: 133 YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK-IR-ELQQQFNITS 190
Query: 464 VLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
+ VT +Q + D +I++++G + + G+ ++L
Sbjct: 191 LYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 7e-11
Identities = 50/196 (25%), Positives = 99/196 (50%), Gaps = 31/196 (15%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL--MD 981
+S P + I+G +G GKS++L ++ R+ +L G+IL+D DI G+ +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82
Query: 982 LRKILGIIPQSPVLFSG-------TVRFNLDPFSEHSDAD--LWEALERAHL----KDAI 1028
+R+ +G++ Q P F + L+ S+AD + +L+R L KD +
Sbjct: 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL 142
Query: 1029 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1088
+ N++ L S GQ+Q L ++R + + +++++DE +A+D + I++ I
Sbjct: 143 KSNAMEL-----------SGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELI 191
Query: 1089 REEFKSCTMLIIAHRL 1104
E + T++I+ H +
Sbjct: 192 EELKEKYTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 7e-11
Identities = 49/214 (22%), Positives = 105/214 (49%), Gaps = 11/214 (5%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
+ +SF +PP + G++G GAGK++ + ++E G I +G +++ +++
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKN 72
Query: 985 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043
+G +P+ L+ TV L +E E + L+ + R L + + ++
Sbjct: 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEI--QKKLQAWLER--LEIVGKKTKKI 128
Query: 1044 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-VRTDALIQKTIREEFKSCTMLIIAH 1102
+ S G +Q + A++ ++L+LDE + +D V + L + + T++ +H
Sbjct: 129 KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSH 188
Query: 1103 RLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1135
R+ + + CDR+L+L G+ + Y T E++ + G
Sbjct: 189 RMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222
|
Length = 300 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-11
Identities = 56/228 (24%), Positives = 103/228 (45%), Gaps = 34/228 (14%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ E+V R+ L L+ I + V ++G +G GK++ L + + E GRI
Sbjct: 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHL-KD 1026
I G D+ D R I ++ Q+ L+ TV N+ F L+ + KD
Sbjct: 59 IGGRDVTDLPPKD-RDI-AMVFQNYALYPHMTVYDNI-AF----------GLKLRKVPKD 105
Query: 1027 AIRR------NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1080
I L ++ + + S GQRQ ++L RA++R K+ ++DE + +
Sbjct: 106 EIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNL---- 161
Query: 1081 DALIQKTIREEFKS------CTMLIIAH-RLNTIIDCDRILLLDSGRV 1121
DA ++ +R E K T + + H ++ + DRI +++ G++
Sbjct: 162 DAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 8e-11
Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 51/251 (20%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 344
I+I N S+ +K L +++LDIP G + +I+G G GK++L+S M L
Sbjct: 2 ITIENVSKSYGTK---VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMM-SRLLKKDSGE 57
Query: 345 AVIRG-------------TVAYVPQVSWI-FNATVRDNILFGSAFEPARY---------- 380
I G ++ + Q + I TVRD + FG R+
Sbjct: 58 ITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFG------RFPYSQGRLTKE 111
Query: 381 -EKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPL 438
+ I+ ++ L + ++ +R ++ +SGGQ+QR +A + ++D + D+PL
Sbjct: 112 DRRIINEA-----IEYL---HLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163
Query: 439 SALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 495
+ LD Q+ R + EL GKT V+V + ++F S D I+ + G V ++G+ ++
Sbjct: 164 NNLDMKHSVQIMKILRRLADEL-GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDE 222
Query: 496 L---SNNGELF 503
+ E++
Sbjct: 223 IIQPEILSEIY 233
|
Length = 252 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 8e-11
Identities = 52/188 (27%), Positives = 96/188 (51%), Gaps = 18/188 (9%)
Query: 309 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRD 367
+I G ++ I+G G GKT+ + + G + P + ++ V+Y PQ +S ++ TV D
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLK--VSYKPQYISPDYDGTVED 420
Query: 368 NILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVY 426
+ + + + T + L+L + ER V +SGG+ QRV++A A+
Sbjct: 421 ---LLRSAIRSAFGSSYFKTEIVKPLNLED------LLERPVDELSGGELQRVAIAAALS 471
Query: 427 SNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRVLVTNQLHFLSQV-DRIILVH 483
+D+++ D+P + LD R + + IR E + KT ++V + ++ + V DR+I V
Sbjct: 472 READLYLLDEPSAYLDVE-QRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI-VF 529
Query: 484 EGMVKEEG 491
EG + G
Sbjct: 530 EGEPGKHG 537
|
Length = 591 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 9e-11
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
+ GLSFT+ + + + G G+GK+++L L + GR+L++G + R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 985 ILGIIPQSPVLFSGTVRFNLDPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043
+L + + + +V NL + ++HSD + EAL R GL+
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARV-----------GLNGFEDRPV 123
Query: 1044 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 1101
S GQ++ ++L+R LL + +LDE T A+D A + + M+++
Sbjct: 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLT 181
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (156), Expect = 9e-11
Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 12/190 (6%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 977
VLH L+ I + +G +G GKS+ L L ++ +L G I G + K
Sbjct: 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156
Query: 978 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHS---DADLWEALERAHLKDAIRRNSLG 1034
++LR +G++ Q P F ++ N+ ++ D + E + LK A + +
Sbjct: 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK 216
Query: 1035 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1094
D + +AG S GQ+Q L ++RA+ ++L++DE T+A+D A I++ I E K
Sbjct: 217 DD--LDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKK 274
Query: 1095 CTMLIIAHRL 1104
+++I+ H +
Sbjct: 275 YSIIIVTHSM 284
|
Length = 329 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 1e-10
Identities = 45/210 (21%), Positives = 89/210 (42%), Gaps = 26/210 (12%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 353
++ + G + ++G G GKT+ I + L P S + V +R +
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77
Query: 354 VPQVSWIFNA-TVRDNI-LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-N 410
V Q + + T +N+ + + E+ + +LL + E +R V
Sbjct: 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERR------ERIDELLDFVGLLEAADRLVKT 131
Query: 411 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 470
SGG ++R+ +AR++ +V D+P LD V++ + + +L+T
Sbjct: 132 YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTT-- 189
Query: 471 HFLSQV----DRIILVHEGMVKEEGTFEDL 496
H++ + DR+ ++ G + EGT E+L
Sbjct: 190 HYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 43/199 (21%)
Query: 274 PNPPLTSGLPAISIRNGYFSW-DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI-- 330
+ + I +RN F + A L NINLDI + A +G +G GK++L+
Sbjct: 3 MMSMVATAPSKIQVRNLNFYYGKFHA----LKNINLDIAKNQVTAFIGPSGCGKSTLLRT 58
Query: 331 ---------------SAML-GE--LPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFG 372
+L GE L P D A++R V V Q F ++ DNI FG
Sbjct: 59 FNRMYELYPEQRAEGEILLDGENILTPKQDI-ALLRAKVGMVFQKPTPFPMSIYDNIAFG 117
Query: 373 -SAFEP-------ARYEKAIDVTSLQHDL-DLLPGGDVTEIGERGVNISGGQKQRVSMAR 423
FE R E A+ +L +++ D L + G ++SGGQ+QR+ +AR
Sbjct: 118 VRLFEKLSRAEMDERVEWALTKAALWNEVKDKL--------HQSGYSLSGGQQQRLCIAR 169
Query: 424 AVYSNSDVFIFDDPLSALD 442
+ +V + D+P SALD
Sbjct: 170 GIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 28/243 (11%)
Query: 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG------- 335
I +N F + S A TL +++ +IP G +IVG G GK+++ M+G
Sbjct: 6 SIIVFKNVSFQYQSDASF-TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG 64
Query: 336 -----ELPPVSDASAVIR---GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAID-V 386
D +R G V P ++ + V+ ++ FG Y++ V
Sbjct: 65 EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFV-GSIVKYDVAFGLENHAVPYDEMHRRV 123
Query: 387 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 446
+ +D+L D +SGGQKQRV++A + N V I D+ S LD
Sbjct: 124 SEALKQVDMLERAD-----YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD-A 177
Query: 447 RQVFDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELF 503
RQ +R ++ + + + + H LS+ D +I++++G V +EGT ++ ++ E
Sbjct: 178 RQNLLDLVR-KVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEEL 236
Query: 504 QKL 506
++
Sbjct: 237 TRI 239
|
Length = 269 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-10
Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 22/228 (9%)
Query: 916 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---F 972
L +R L +FT+P + G +G+GK+S++N + + + GRI ++G
Sbjct: 4 LNFRQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLV 63
Query: 973 DIAK--FGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIR 1029
D K F + R+I G + Q LF TVR NL S RA +
Sbjct: 64 DAEKGIFLPPEKRRI-GYVFQDARLFPHYTVRGNLRYGMWKSM--------RAQFDQLVA 114
Query: 1030 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ--K 1086
LG++ + S G++Q +++ RALL ++L++DE A++D+ R ++ +
Sbjct: 115 --LLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLE 172
Query: 1087 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
+R+E +L ++H L+ ++ DR+++L++G+V EE+ +
Sbjct: 173 RLRDEIN-IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219
|
Length = 352 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 22/194 (11%)
Query: 306 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVIRGTVAYVPQV 357
I+ + G + ++G G GKT+ I +LG + P S R + Y+P+
Sbjct: 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEE 78
Query: 358 SWIF-NATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGG 414
++ V D ++ + E + L+L +E + V +S G
Sbjct: 79 RGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL------SEYANKRVEELSKG 132
Query: 415 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHF 472
+Q+V AV + ++ I D+P S LD V ++ IR EL +GKT +L T+Q+
Sbjct: 133 NQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIR-ELARAGKTVILSTHQMEL 190
Query: 473 LSQV-DRIILVHEG 485
+ ++ DR++L+++G
Sbjct: 191 VEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 61/233 (26%), Positives = 100/233 (42%), Gaps = 36/233 (15%)
Query: 297 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG------- 349
+ L NIN P S +A++G G GK++L G L P S S +IRG
Sbjct: 14 SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS-GSVLIRGEPITKEN 72
Query: 350 ------TVAYVPQVS--WIFNATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLD 394
V V Q IF+ TV +I FG R A+ + L+ D
Sbjct: 73 IREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD 132
Query: 395 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 454
+P ++SGG+K+RV++A + V + D+P + LD +++ D
Sbjct: 133 RVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN 181
Query: 455 R-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQK 505
E G T + T+QL + ++ D I ++ +G + GT E++ +L +
Sbjct: 182 DLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLAR 234
|
Length = 277 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 48/212 (22%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 977
+L G+S I S I+G +G GKS+ L L R+ ELE GR+ +I +
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81
Query: 978 GLMDLRKILGIIPQSPVLFSGTV---------------RFNLDPFSEHS--DADLWEALE 1020
L LR+ + ++ P LF +V + +D E + DADLW+
Sbjct: 82 NLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWD--- 138
Query: 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--- 1077
+K I +++L L S GQ+Q L ++RAL + K+L++DE +D
Sbjct: 139 --EIKHKIHKSALDL-----------SGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIA 185
Query: 1078 -VRTDALIQK-TIREEFKSCTMLIIAHRLNTI 1107
++ ++LIQ +R E TM+I++H L+ +
Sbjct: 186 SMKVESLIQSLRLRSEL---TMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-10
Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 55/240 (22%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 343
+ ++ S+D K + I+LD+ G + +VG +G GK++L+ M+ L ++
Sbjct: 3 GLKLQAVRKSYDGKT--QVIKGIDLDVADGEFIVLVGPSGCGKSTLLR-MVAGLERITSG 59
Query: 344 SAVIRGTV-----------AYVPQVSWIFN------ATVRDNILFG-------SAFEPAR 379
I G V A V Q N +VR+N+ +G A R
Sbjct: 60 EIWIGGRVVNELEPADRDIAMVFQ-----NYALYPHMSVRENMAYGLKIRGMPKAEIEER 114
Query: 380 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 439
+A + L+ LD P R +SGGQ+QRV+M RA+ VF+FD+PLS
Sbjct: 115 VAEAARILELEPLLDRKP---------R--ELSGGQRQRVAMGRAIVREPAVFLFDEPLS 163
Query: 440 ALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGT 492
LDA + Q +R E+ T + VT +Q+ ++ DR+++++ G+ ++ GT
Sbjct: 164 NLDAKLRVQ-----MRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGT 218
|
Length = 356 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 60/229 (26%), Positives = 111/229 (48%), Gaps = 32/229 (13%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---------FDIAK 976
L+ LSF++ P + ++G GAGK+++++ + + G +L DG IA+
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 977 FGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRN---- 1031
G+ RK Q P +F TVR NL+ + + D ++ +L A L+ RR
Sbjct: 81 AGIG--RKF-----QKPTVFENLTVRENLE-LALNRDKSVFASL-FARLRAEERRRIDEL 131
Query: 1032 --SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT-- 1087
++GL + S GQ+Q L + L + K+L+LDE A + TDA +KT
Sbjct: 132 LATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM---TDAETEKTAE 188
Query: 1088 -IREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
++ ++L++ H + + + D++ +L G VL + +E+ ++
Sbjct: 189 LLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237
|
Length = 249 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 46/185 (24%), Positives = 101/185 (54%), Gaps = 20/185 (10%)
Query: 933 IPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFGLMDLRKI 985
IP ++G +G GKS++L +L R+ +L +GR+L DG D+ + +++R+
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 986 LGIIPQSPVLFSGTVRFNL------DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 1039
+G++ Q P F ++ N+ + ++ D + +L +A + D + ++
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKD-------KL 148
Query: 1040 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 1099
+E+G + S GQ+Q L ++R + +++++DE +A+D + I++T+ E K+ T++I
Sbjct: 149 NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVI 208
Query: 1100 IAHRL 1104
+ H +
Sbjct: 209 VTHNM 213
|
Length = 269 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 2e-10
Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 30/199 (15%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 977
+L ++ IP + ++G +G GKS+ + TL R+ +L G I +DG DI
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 978 GLMDLRKILGIIPQSPVLFSGTVRFNL------------DPFSEHSDADLWEALERAHLK 1025
+++LRK +G++ Q P F ++ N+ D E + L A +K
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK 137
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1085
D + +++LGL S GQ+Q L ++R + +++++DE +A+D + I+
Sbjct: 138 DKLDKSALGL-----------SGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIE 186
Query: 1086 KTIREEFKSCTMLIIAHRL 1104
I + + T++I+ H +
Sbjct: 187 DLIHKLKEDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 56/230 (24%), Positives = 112/230 (48%), Gaps = 23/230 (10%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR-KILG 987
+SFT+ + I+G G+GKS++ L ++E G ILI+ + FG R K +
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLH-FGDYSFRSKRIR 90
Query: 988 IIPQSPVLFSGTVRFN--------LD-PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ 1038
+I Q P N LD P ++D + + ++ + + +R L L
Sbjct: 91 MIFQDP-----NTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQ--IFETLRMVGL-LPDH 142
Query: 1039 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTDALIQKTIREEFKSCT 1096
+ + GQ+Q ++L+RAL+ R KI++ DEA A++D +R+ + +E + +
Sbjct: 143 ANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGIS 202
Query: 1097 MLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK-MVQS 1144
+ + + I D++L++ G V+E + ++L++ +K +++S
Sbjct: 203 YIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIES 252
|
Length = 267 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 3e-10
Identities = 54/222 (24%), Positives = 107/222 (48%), Gaps = 22/222 (9%)
Query: 928 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL--M 980
++ + ++G +G GK++ L + R+ +L GRIL+DG DI + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 981 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG------ 1034
+R+ +G++ Q P F F+ + + L +R HL + R+ G
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFD----NVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE 137
Query: 1035 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1094
+ ++ S GQ+Q L ++RAL +IL++DE T+A+D + A I+ + + K
Sbjct: 138 VKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKV 197
Query: 1095 CTMLIIAHRLNT---IIDCDRILLLDSGRVLEYDTPEELLSN 1133
T++I+ H ++ + D L+ G ++E+ ++L +N
Sbjct: 198 TTIIIVTHNMHQAARVSDTTSFFLV--GDLVEHGPTDQLFTN 237
|
Length = 252 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 52/225 (23%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 985
L+ LS + P + I+G GAGK++M++ + + G +L G D+ + +I
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTG---LPEHQI 74
Query: 986 --LGIIP--QSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR------NSLG 1034
GI Q P +F TV NL+ + D ++ +L L + ++G
Sbjct: 75 ARAGIGRKFQKPTVFENLTVFENLE-LALPRDKSVFASL-FFRLSAEEKDRIEEVLETIG 132
Query: 1035 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT---IREE 1091
L + S GQ+Q L + L++ K+L+LDE A + TD +KT ++
Sbjct: 133 LADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM---TDEETEKTAELLKSL 189
Query: 1092 FKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSNE 1134
+++++ H + + I ++ +L G VL + +++ ++
Sbjct: 190 AGKHSVVVVEHDMEFVRSIAD-KVTVLHQGSVLAEGSLDQVQADP 233
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-10
Identities = 48/196 (24%), Positives = 91/196 (46%), Gaps = 27/196 (13%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI----DGFDIAKFG- 978
PVL +S T+ + V + G +GAGKS++L +L+ + GRIL+ D+A+
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 979 --LMDLRK--------ILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 1028
++++R+ L +IP+ + +P E A RA ++ +
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVS-----ALEVVAEPLLERGVPRE-AARARA--RELL 133
Query: 1029 RRNSLGLDAQV-SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1087
R L + ++ FS G++Q ++++R + IL+LDE TA++D ++ +
Sbjct: 134 AR--LNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVEL 191
Query: 1088 IREEFKS-CTMLIIAH 1102
I E ++ I H
Sbjct: 192 IAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 50/233 (21%), Positives = 108/233 (46%), Gaps = 29/233 (12%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI-AKFGLMD-- 981
L+ +S+T + I+G +G+GKS+++ +++ + G I + I K +
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 982 -------------LRKILGIIPQSP--VLFSGTVRFNL--DPFSEHSDADLWEALERAHL 1024
LR+ + ++ Q P LF T+ ++ P + L A
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA------LGVKKSEAKK 154
Query: 1025 KDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1083
N +GLD E S GQ++ ++++ L + +IL+ DE TA +D + +
Sbjct: 155 LAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHE 214
Query: 1084 IQKTIREEFKSC-TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
+ + I + + T+ +I H + +++ D ++++D G++L+ TP E+ +++
Sbjct: 215 MMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
|
Length = 320 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 4e-10
Identities = 57/244 (23%), Positives = 114/244 (46%), Gaps = 29/244 (11%)
Query: 284 AISIRNGYFSW-DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 342
+ ++ F++ DSK +P L +I+ IP GS A++G G GK+++ + G L P +
Sbjct: 5 IVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDN 62
Query: 343 ASAVI---------------RGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAID 385
++ I R V V Q + ATV D++ FG + I
Sbjct: 63 PNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK 122
Query: 386 VTSLQHDLDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 444
+ D+L + + I N+SGGQKQRV++A + + I D+ S LD
Sbjct: 123 IVR-----DVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177
Query: 445 VGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGEL 502
Q+ R ++ + + T + +T+ + + D+++++ +G + +G+ ++ + E+
Sbjct: 178 GKEQILKLIRKLKKK-NNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEM 236
Query: 503 FQKL 506
+++
Sbjct: 237 LKEI 240
|
Length = 282 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 4e-10
Identities = 56/224 (25%), Positives = 108/224 (48%), Gaps = 23/224 (10%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 977
VL ++ P I+G +G GKS++L L R+ ++ G +L+D +I
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 978 GLMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDADLWEALER----AHLKDAIR 1029
+++LRK +G++ Q P F + V F + + L E +E+ A L D ++
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK 138
Query: 1030 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 1089
N + ++G S GQ+Q L ++R L +++++DE +A+D + I++ ++
Sbjct: 139 DN-------LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQ 191
Query: 1090 EEFKSCTMLIIAHRLNTII-DCDRILLLDSGRVLEYDTPEELLS 1132
E ++ T+ I+ H + D L +G ++EY E+ S
Sbjct: 192 ELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235
|
Length = 251 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 4e-10
Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 18/205 (8%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
VL G+ FT+ + ++G GAGKS+++ + IV + G + I G A+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84
Query: 984 KILGI--IPQSPVLFSG-TVRFN-LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 1039
+ LGI +PQ P+LF +V+ N L + + +++ A L LD+
Sbjct: 85 Q-LGIYLVPQEPLLFPNLSVKENILFGLPKRQAS-----MQKMKQLLAALGCQLDLDSSA 138
Query: 1040 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-VRTDALIQKTIRE-EFKSCTM 1097
+ V RQ++ + R L+R S+IL+LDE TA++ T+ L + IRE + +
Sbjct: 139 G----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGI 193
Query: 1098 LIIAHRLNTIID-CDRILLLDSGRV 1121
+ I+H+L I DRI ++ G +
Sbjct: 194 VFISHKLPEIRQLADRISVMRDGTI 218
|
Length = 510 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 5e-10
Identities = 66/243 (27%), Positives = 118/243 (48%), Gaps = 35/243 (14%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELPPVSDASAVIRGT----------V 351
L N++L +P G + ++G +G GK++LI + L E P + S ++ G
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLTTLSNSELT 78
Query: 352 AYVPQVSWIF-------NATVRDNILFGSAFEPARYEKA-IDVTSLQHDLDLLPGGDVTE 403
Q+ IF + TV N+ + ++ VT L L L+ GD +
Sbjct: 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTEL---LALVGLGDKHD 135
Query: 404 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGK 461
N+SGGQKQRV++ARA+ SN V + D+ SALD + + + + I L G
Sbjct: 136 --SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GL 192
Query: 462 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN--GELFQKLMENAGKM---EE 515
T +L+T+++ + ++ D + ++ G + E+GT ++ ++ L QK + + + E+
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRSTLHLSIPED 252
Query: 516 YVE 518
Y E
Sbjct: 253 YQE 255
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 49/185 (26%), Positives = 78/185 (42%), Gaps = 28/185 (15%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR 348
L +N G ++A++G G GK++L+ + G L P S A + R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 349 GTVAYVPQ--VSWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDVTE 403
V V Q +F A V ++ FG A E+ + + L +
Sbjct: 68 QRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVR--------EALTAVGASG 119
Query: 404 IGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 462
+ ER + +SGG+K+RV++A AV DV + D+P + LD Q+ R G T
Sbjct: 120 LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMT 179
Query: 463 RVLVT 467
V+ T
Sbjct: 180 VVIST 184
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 5e-10
Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 37/221 (16%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----------------DASAVIR 348
+ +LD+ G + I+G +G GK++L+ + + P + + R
Sbjct: 46 DASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRR 105
Query: 349 GTVAYVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGD 400
++ V Q + + TV +N+ FG A R +A+++ L+ D P
Sbjct: 106 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN-- 163
Query: 401 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS- 459
+SGG +QRV +ARA+ ++ D+ + D+ SALD + ++ D + +
Sbjct: 164 ---------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL 214
Query: 460 GKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN 499
KT V +T+ L L DRI ++ +G + + GT E++ N
Sbjct: 215 KKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 5e-10
Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 29/236 (12%)
Query: 927 HGLSFTIPPSDKVGIVGRTGAGKS----SMLNTLFRIVELERGRILIDGFDIAKFGLMDL 982
L+ ++ + + +VG +G+GKS ++L L + G IL+DG + L
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLL--PLSIR 60
Query: 983 RKILGIIPQSPV-----LFS------GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 1031
+ + I Q+P LF+ T+R +L S+ + A + EALE L D
Sbjct: 61 GRHIATIMQNPRTAFNPLFTMGNHAIETLR-SLGKLSKQARALILEALEAVGLPDPEEV- 118
Query: 1032 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE- 1090
L + S G Q + ++ ALL L+ DE T +DV A + K +RE
Sbjct: 119 ---LKKYPFQ----LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171
Query: 1091 -EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1144
+ +L+I H L + D + ++D GR++E T +E+ N ++ + S
Sbjct: 172 RQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLS 227
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 43/234 (18%)
Query: 274 PNPP-LTSGLPAI--SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 330
N L G P + ++ Y ER L ++L IP G VA+VG +G GK++L+
Sbjct: 2 MNTARLNQGTPLLLNAVSKRY------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLL 55
Query: 331 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR---YEKAIDVT 387
+ G P A ++ GT A R++ F+ AR ++K ID
Sbjct: 56 RLLAGLETP--SAGELLAGTAPL---------AEAREDTRL--MFQDARLLPWKKVIDNV 102
Query: 388 SL-------QHDLDLLPG-GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 439
L L L G E +SGGQKQRV++ARA+ + + D+PL
Sbjct: 103 GLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLG 162
Query: 440 ALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQ----VDRIILVHEGMV 487
ALDA + R I + G T +LVT H +S+ DR++L+ EG +
Sbjct: 163 ALDA-LTRIEMQDLIESLWQQHGFTVLLVT---HDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 5e-10
Identities = 69/279 (24%), Positives = 116/279 (41%), Gaps = 34/279 (12%)
Query: 841 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE-LPSEAPLVIESNRP 899
A +G L+ ++T L R+ +L L+ V+ GN+ E E R
Sbjct: 378 KAADALGRLMLAGRDMTRLAGFTARVDTLL-QVLDDVKS-GNFKRPRVEEIESGREGGRN 435
Query: 900 PPGWPSSGS-------IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 952
P G IKFE++ L P ++ LSF +P + + I G G GKSS+
Sbjct: 436 SNLVPGRGIVEYQDNGIKFENIPL-VTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSL 494
Query: 953 LNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL------DP 1006
L + + GR+ + L +PQ P + GT+R + +
Sbjct: 495 FRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSED 543
Query: 1007 FSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064
SD DL + L+ L + R G A V + + S G++Q ++++R +
Sbjct: 544 MKRRGLSDKDLEQILDNVQLTHILERE-GGWSA-VQDWMDVLSGGEKQRIAMARLFYHKP 601
Query: 1065 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 1103
+ +LDE T+AV V + + + RE T+ ++HR
Sbjct: 602 QFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 6e-10
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 51/236 (21%)
Query: 275 NPPLTSGLPAISIRN-GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS----- 328
+P +SG I R+ F D +A L ++++DIP + A++G +G GK++
Sbjct: 30 DPAASSGETVIEARDLNVFYGDEQA----LDDVSMDIPENQVTAMIGPSGCGKSTFLRCI 85
Query: 329 -----LISA--MLGEL----PPVSDAS---AVIRGTVAYVPQVSWIFNATVRDNILFG-- 372
LI A + GEL V DA +R + V Q F ++ DN+ +G
Sbjct: 86 NRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLK 145
Query: 373 ----SAFEPARYEKAIDVTSL----QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 424
R E+++ +L + LD G+++SGGQ+QR+ +ARA
Sbjct: 146 IQGYDGDIDERVEESLRRAALWDEVKDQLD-----------SSGLDLSGGQQQRLCIARA 194
Query: 425 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQVDRI 479
+ + +V + D+P SALD ++ D + EL+ + T V+VT H + Q RI
Sbjct: 195 IAPDPEVILMDEPASALDPVATSKIED--LIEELAEEYTVVIVT---HNMQQAARI 245
|
Length = 285 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 6e-10
Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 23/189 (12%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVIRGTVAY 353
+++ I G ++G G GK+++ +LG + P V + + R +
Sbjct: 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81
Query: 354 VPQVSWI-FNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 411
VPQ + TVR+N+L FG F + E + SL L DV R +
Sbjct: 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADV-----RVALL 136
Query: 412 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQL 470
SGG K+R+++ARA+ ++ + I D+P + LD H +++R +R L+ GKT +L T
Sbjct: 137 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGKTILLTT--- 192
Query: 471 HFLSQVDRI 479
HF+ + +R+
Sbjct: 193 HFMEEAERL 201
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 6e-10
Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 45/237 (18%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFG-- 978
L+ ++ +IP + ++G +G GKS++L R+ +L G IL +G +I G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 979 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 1021
++ LR+ +G++ Q P F ++ N LD E S A LW+
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD---- 137
Query: 1022 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1081
+KD + ++L L S GQ+Q L ++R L +++++DE +A+D
Sbjct: 138 -EVKDRLHDSALSL-----------SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185
Query: 1082 ALIQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
A I+ I + K T++I+ H + + D + L G+++E+D ++ N
Sbjct: 186 AKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYL--GKLIEFDKTTQIFENPH 240
|
Length = 253 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 6e-10
Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 33/249 (13%)
Query: 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-----VEL 962
+I+ V R + + V++ +S I + + +VG +G+GKS ++ R+ V
Sbjct: 7 AIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVY 66
Query: 963 ERGRILIDGFDIAKFGLMDLRKILG----IIPQSPVLFSGTVRFNLDPFSEHS-DADLWE 1017
G I G + LR + G +I Q P++ +L+P H+ + L+E
Sbjct: 67 PSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV-------SLNPL--HTLEKQLYE 117
Query: 1018 --ALERAHLKDAIRRNSLG-LD--------AQVSEAGENFSVGQRQLLSLSRALLRRSKI 1066
+L R ++A R L LD ++++ S G+RQ + ++ ALL R ++
Sbjct: 118 VLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPEL 177
Query: 1067 LVLDEATAAVDVRTDALIQKTIREEFKSCTM--LIIAHRLNTIID-CDRILLLDSGRVLE 1123
L+ DE T A+DV A I + +RE + M L I H L+ + DR+ ++ +GR +E
Sbjct: 178 LIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237
Query: 1124 YDTPEELLS 1132
+ L S
Sbjct: 238 QNRAATLFS 246
|
Length = 529 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 7e-10
Identities = 69/249 (27%), Positives = 117/249 (46%), Gaps = 39/249 (15%)
Query: 909 IKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 965
I F+ V RY+ + P L+ ++ +IP V I+G TG+GKS++L L +++ G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 966 RILIDGFDIAKFG-----LMDLRKILGIIPQSP--VLFSGTVR----FNLDPF--SEHSD 1012
+ I G + G L LRK +GI+ Q P LF TV F F SE
Sbjct: 63 TVTI-GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE-- 119
Query: 1013 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDE 1071
+A ++A ++ I +GL ++ S GQ + ++++ L ++LVLDE
Sbjct: 120 ----DAKQKA--REMIEL--VGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE 171
Query: 1072 ATAAVDVRTDALIQKTIREEF------KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 1124
TA +D + +K + E F K T +++ H + D+I+++ G V
Sbjct: 172 PTAGLDPKG----RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227
Query: 1125 DTPEELLSN 1133
TP E+ ++
Sbjct: 228 GTPREIFAD 236
|
Length = 290 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 7e-10
Identities = 60/218 (27%), Positives = 107/218 (49%), Gaps = 31/218 (14%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
V+ +SFT+ P + +G+VG +G+GKS+ L R++ +G I DG + + R+
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL---NRRQ 356
Query: 985 ILGIIPQSPVLF-----SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSLGLDA 1037
+L + + V+F S R N+ E L A + + +GLD
Sbjct: 357 LLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP 416
Query: 1038 QV-----SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 1092
+ +E FS GQRQ ++++RAL+ + +++LDE T+++D +T +Q I
Sbjct: 417 ETRHRYPAE----FSGGQRQRIAIARALILKPSLIILDEPTSSLD-KT---VQAQILALL 468
Query: 1093 KS------CTMLIIAHRLNTIID-CDRILLLDSGRVLE 1123
KS L I+H L+ + C ++++L G V+E
Sbjct: 469 KSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506
|
Length = 529 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 9e-10
Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 45/213 (21%)
Query: 306 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TVAYVPQ-----VSW 359
++ + G + ++G G GKT+ + + G L P A + G V P + +
Sbjct: 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP-DAGFATVDGFDVVKEPAEARRRLGF 82
Query: 360 IFNA-------TVRDNILF--------GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
+ ++ T R+N+ + G AR E+ D ++ LD
Sbjct: 83 VSDSTGLYDRLTARENLEYFAGLYGLKGDELT-ARLEELADRLGMEELLD---------- 131
Query: 405 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKT 462
R S G +Q+V++ARA+ + V + D+P + LD R + + R +R GK
Sbjct: 132 -RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL--GKC 188
Query: 463 RVLVTNQLHFLSQV----DRIILVHEGMVKEEG 491
+ T H + +V DR++++H G V EG
Sbjct: 189 ILFST---HIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 9e-10
Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 29/188 (15%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-------------VSDASAVIRGTV 351
+++L + G + A++G G GK++L+ + G P + IR +
Sbjct: 22 DVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81
Query: 352 AYVPQ-VSWIFNATVRDNILFGSA------FEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
V Q + TV +NI+ G + + I S ++ L + P V ++
Sbjct: 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADL 141
Query: 405 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL-DAHVGRQVFDRCIRGELSGKTR 463
S G++QRV + +A+Y + + I D+P + L ++F+ R GKT
Sbjct: 142 -------SVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA-DELFEILRRLAAEGKTI 193
Query: 464 VLVTNQLH 471
+ +T++L
Sbjct: 194 IFITHKLK 201
|
Length = 501 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 28/227 (12%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----ELERGRILIDGFDIAKFGLM 980
L +S ++ + V ++G +G GK+ TL RI+ G I G DI + L
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKT----TLLRIIAGLERQTAGTIYQGGRDITR--LP 72
Query: 981 DLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAH-LKDAIRRNSLGLDAQ 1038
++ GI+ QS LF TV N+ ++ E ER L D + GL
Sbjct: 73 PQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----GLPGS 127
Query: 1039 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK----- 1093
+ S GQ+Q ++L+RAL +L+LDE +A+ DA +++ +R E +
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSAL----DARVREHLRTEIRQLQRR 183
Query: 1094 -SCTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
T +++ H + + DRI++++ G + + TP+E+ + + F
Sbjct: 184 LGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 24/214 (11%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG------------- 349
L ++L I G +V ++G G GKT+L+ + G+ P + V G
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD-PRATSGRIVFDGKDITDWQTAKIMR 79
Query: 350 -TVAYVPQVSWIFN-ATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 406
VA VP+ +F+ TV +N+ G F E ++++ I +L P I +
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWV-----YELFPRLHERRI-Q 133
Query: 407 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLV 466
R +SGG++Q +++ RA+ S + + D+P L + +Q+FD + G T LV
Sbjct: 134 RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLV 193
Query: 467 -TNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 499
N L DR ++ G V E T + L N
Sbjct: 194 EQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227
|
Length = 237 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 1e-09
Identities = 71/326 (21%), Positives = 122/326 (37%), Gaps = 59/326 (18%)
Query: 208 TVVSFGMFTLLGGDLTPARAFTSL-------SLFAVLRF--PLFMLPNMITQVVNANVSL 258
F L+G L A F S+ + A+L PL ML + + + A ++
Sbjct: 242 NFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIAC 301
Query: 259 KRMEEFLLAEEKILLPNP-PLTSGLPAISIRNGYFSWDSKAERPTLLN------------ 305
+R+ +F E+ P P S + + S DS + +N
Sbjct: 302 QRLADF---GERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFAL 358
Query: 306 --INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYVPQVS 358
I+L I G +V IVG G GK++L G P D +AV +
Sbjct: 359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD-- 416
Query: 359 WIFNATVRDNILFGSAFEPARYEKA--------IDVTSLQHDLDLLPGGDVTEIGERGVN 410
+F+A D LF P E A + + + + GG T
Sbjct: 417 -LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TA 470
Query: 411 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL------SGKTRV 464
+S GQ++R+++ A + + +FD+ + D F R EL GKT +
Sbjct: 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDP-----AFKRFFYEELLPDLKRQGKTII 525
Query: 465 LVTNQLHFLSQVDRIILVHEGMVKEE 490
++++ + D+II + G + ++
Sbjct: 526 IISHDDQYFELADQIIKLAAGCIVKD 551
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 1e-09
Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 43/227 (18%)
Query: 282 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPP 339
+PAI + N F +D++ L ++++I + AI+G +G GK++ + + + EL
Sbjct: 5 IPAIKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL-- 59
Query: 340 VSDASAVIRGTVAYVPQ---------------VSWI------FNATVRDNILFGSAFEPA 378
++ + G V + Q VS + F +V DN+ +G
Sbjct: 60 --ESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGW 117
Query: 379 RYEKAID--VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 436
R + ID V S D DL +I + +++SGGQ+QR+ +ARA+ V + D+
Sbjct: 118 RPKLEIDDIVESALKDADLWDEIK-HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDE 176
Query: 437 PLSALDAHVGRQV----FDRCIRGELSGKTRVLVTNQLHFLSQVDRI 479
P LD +V +R EL T V+V++ LH QV R+
Sbjct: 177 PCFGLDPIASMKVESLIQSLRLRSEL---TMVIVSHNLH---QVSRL 217
|
Length = 261 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 1e-09
Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 24/221 (10%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
V++ LSFTI + G++G GAGKS++ L ++ +RG+I + G + + R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARL-ARV 77
Query: 985 ILGIIPQSPVL-FSGTVRFNLDPFSEH---SDADLWEALERAHLKDAIRRNSLGLDAQVS 1040
+G++PQ L TVR NL F + S ++ + L + R S D +V+
Sbjct: 78 AIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI--PSLLEFARLESKA-DVRVA 134
Query: 1041 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLI 1099
S G ++ L+L+RAL+ ++L+LDE T +D LI + +R + T+L+
Sbjct: 135 L----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILL 190
Query: 1100 IAH------RLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1134
H RL CDR+ +L+SGR + P L+ +
Sbjct: 191 TTHFMEEAERL-----CDRLCVLESGRKIAEGRPHALIDEQ 226
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 29/162 (17%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
++ +S T+P + G++G GAGKS++L + I+ G I+ DG + DL K
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR---KDLHK 71
Query: 985 ILGIIPQSPVLFSG-TVRFNLD--------PFSEHSDADLWEALERAHLKDAIRRNSLGL 1035
I G + +SP L+ T R NL P S + E L L + ++ +
Sbjct: 72 I-GSLIESPPLYENLTARENLKVHTTLLGLPDSR-----IDEVLNIVDLTNTGKKKA--- 122
Query: 1036 DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1077
+ FS+G +Q L ++ ALL K+L+LDE T +D
Sbjct: 123 --------KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 1e-09
Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 34/201 (16%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPP--------------VSDA--- 343
L++++L IP ++A +G +G GK++L+ + +L P + D+
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95
Query: 344 SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 403
S +R V V Q F ++ +NI AF P ++ L D L E
Sbjct: 96 SVKLRRQVGMVFQRPNPFPKSIYENI----AFAPRANGYKGNLDELVED-SLRRAAIWEE 150
Query: 404 IG----ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 459
+ E+G +SGGQ+QR+ +ARA+ DV + D+P SALD RQV + C+ EL
Sbjct: 151 VKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL--ELK 208
Query: 460 GK-TRVLVTNQLHFLSQVDRI 479
+ T ++VT H + Q R+
Sbjct: 209 EQYTIIMVT---HNMQQASRV 226
|
Length = 274 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 40/202 (19%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 977
L +S IP + +G +G GKS++L R+ +L G I +DG +I K
Sbjct: 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99
Query: 978 GLMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALE 1020
+ +LR+ +G++ Q P F ++ N LD E S A LW+
Sbjct: 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWD--- 156
Query: 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1080
+KD + N+ GL S GQ+Q L ++RA+ ++L+LDE T+A+D +
Sbjct: 157 --EVKDRLHENAFGL-----------SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIS 203
Query: 1081 DALIQKTIREEFKSCTMLIIAH 1102
I++ I E T++I+ H
Sbjct: 204 TLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 31/225 (13%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
PVL ++ I + + I G TG+GK+S+L + +E G+I G
Sbjct: 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR----------- 99
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA-HLKDAIRRNSLGLDAQVSEA 1042
+ Q + GT++ N+ F D ++++ +A L++ I + + + E
Sbjct: 100 --ISFSSQFSWIMPGTIKENI-IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG 156
Query: 1043 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------- 1095
G S GQR +SL+RA+ + + + +LD +DV T+ +E F+SC
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE-------KEIFESCVCKLMAN 209
Query: 1096 -TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1139
T +++ ++ + D+IL+L G Y T E L + FS
Sbjct: 210 KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE-LQSLRPDFS 253
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 2e-09
Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 45/224 (20%)
Query: 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---------------DAS 344
R L +++L + G +VAI+G G GK++L+ A+ GEL P S
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAEL 74
Query: 345 AVIRGTVAYVPQVSWI-FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 403
A R A +PQ S + F TV + + G A P +A D + L + D+
Sbjct: 75 ARRR---AVLPQHSSLSFPFTVEEVVAMGRA--PHGLSRAEDDALVAAALAQV---DLAH 126
Query: 404 IGERGV-NISGGQKQRVSMARA---VYSNSD---VFIFDDPLSALD-AH---VGRQVFDR 452
+ R +SGG++QRV +AR ++ + D+P SALD AH V R
Sbjct: 127 LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQL 186
Query: 453 CIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGT 492
L+ V+V LH L+ DRI+L+H+G + +GT
Sbjct: 187 AHERGLA----VIVV--LHDLNLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 47/228 (20%)
Query: 282 LPAISIRN-GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAMLGEL 337
P I I N + + KA + N+ + I + AI+G +G GKT+L I+ M +
Sbjct: 1 EPIIEIENFSAYYGEKKAVK----NVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHI 56
Query: 338 P-----------------PVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR- 379
P P D + R V V Q F ++ DN+ FG +
Sbjct: 57 PGFRVEGKIYFKGQDIYDPQLDVT-EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKS 115
Query: 380 -------YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 432
E+++ +L ++ +E+ + G +SGGQ+QR+ +ARA+ +V
Sbjct: 116 KHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQQRLCIARALAVEPEVI 168
Query: 433 IFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQVDRI 479
+ D+P SALD + Q ++ + ELS T V+VT H + Q RI
Sbjct: 169 LLDEPTSALDP-IATQRIEKLLE-ELSENYTIVIVT---HNIGQAIRI 211
|
Length = 250 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 38/242 (15%)
Query: 286 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA------------M 333
S++N + SK L +INLDI + A +G +G GK++ + +
Sbjct: 7 SVKNLNLWYGSKQ---ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKV 63
Query: 334 LGEL-----PPVSDASAVI--RGTVAYVPQVSWIFNATVRDNILFGSAFEP-ARYEKAID 385
GEL S + V+ R V V Q F ++ DN+ +G A+ +K +D
Sbjct: 64 KGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLD 123
Query: 386 VTSLQHDLDLLPGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 441
+ L G E+G+R +SGGQ+QR+ +ARA+ + + D+P SAL
Sbjct: 124 EIV---EKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSAL 180
Query: 442 DAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLS 497
D V V + I+ T ++VT H + Q DR+ G + E T +++
Sbjct: 181 DP-VATNVIENLIQELKKNFTIIVVT---HSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236
Query: 498 NN 499
N
Sbjct: 237 KN 238
|
Length = 251 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-09
Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 25/201 (12%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELP----------PVSDASAVIRGTVAY 353
++ + G ++G G GKT+ + +LG P PV + R V
Sbjct: 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
Query: 354 VPQVSWIF-NATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 411
VPQ + + TVR+N+L FG F + V L L D ++GE +
Sbjct: 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-AKVGE----L 139
Query: 412 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQL 470
SGG K+R+++ARA+ ++ DV + D+P + LD +++R +R L GKT +L T
Sbjct: 140 SGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWER-LRSLLARGKTILLTT--- 195
Query: 471 HFLSQVDRIILVHEGMVKEEG 491
HF+ + +R L V EEG
Sbjct: 196 HFMEEAER--LCDRLCVIEEG 214
|
Length = 306 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 48/178 (26%), Positives = 72/178 (40%), Gaps = 48/178 (26%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA---MLGELPPVSDASAVI-------- 347
E L NINLDI + AI+G +G GK++ I M+ +P V ++
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95
Query: 348 --------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGG 399
R V V Q F ++ DN+ +G + +K +D
Sbjct: 96 KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLD-------------- 141
Query: 400 DVTEIGERGVNI---------------SGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442
++ E RG I SGGQ+QR+ +AR + DV + D+P SALD
Sbjct: 142 EIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 34/240 (14%)
Query: 279 TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 338
T+ P + R+ + L I+ + G + A++GG G GK++L+ + G +P
Sbjct: 6 TTAPPLLCARS---ISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP 62
Query: 339 PVSDASAVIRGTVAY---------------VPQVSWIF-NATVRDNILFGSAFEPARYEK 382
P D+ + G VPQ +F N +V++NILFG A +K
Sbjct: 63 P--DSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQK 120
Query: 383 AID-VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 441
+ +L LDL E+ +R Q V + R + +S + I D+P ++L
Sbjct: 121 MKQLLAALGCQLDLDSSAGSLEVADR---------QIVEILRGLMRDSRILILDEPTASL 171
Query: 442 DAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
++F R IR L+ G V ++++L + Q+ DRI ++ +G + G DLS +
Sbjct: 172 TPAETERLFSR-IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD 230
|
Length = 510 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 42/208 (20%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ------ 356
L +NL I G ++++G +G GK++L++ + G P + ++ G P
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-TSGGVILEGKQITEPGPDRMVV 59
Query: 357 ------VSWIFNATVRDNILFG------SAFEPAR---YEKAIDVTSLQHDLDLLPGGDV 401
+ W+ TVR+NI + R E+ I + L D PG
Sbjct: 60 FQNYSLLPWL---TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG--- 113
Query: 402 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSG 460
+SGG KQRV++ARA+ V + D+P ALDA + + ++ E
Sbjct: 114 --------QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 461 KTRVLVTNQLH---FLSQVDRIILVHEG 485
T ++VT+ + LS DR++++ G
Sbjct: 166 VTVLMVTHDVDEALLLS--DRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 61/240 (25%), Positives = 112/240 (46%), Gaps = 35/240 (14%)
Query: 306 INLDIPVGSLVAIVGGTGEGKTSLISAM----LGELPPVSDASAV-------------IR 348
++L+I G +VA++G +G GK++L+ + G+ S + IR
Sbjct: 23 VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82
Query: 349 GTVAYVPQVSWIFNA----TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
+ A + FN +V +N+L G+ + + + L +T +
Sbjct: 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQA--LTRV 140
Query: 405 G------ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRG 456
G +R +SGGQ+QRV++ARA+ + V + D+P+++LD R V D R I
Sbjct: 141 GMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI-N 199
Query: 457 ELSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEE 515
+ G T V+ +Q+ + L +RI+ + +G V +G+ + N E F L + ++EE
Sbjct: 200 QNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDN--ERFDHLYRSINRVEE 257
|
Length = 262 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 48/237 (20%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL--MD 981
++ I P +G +G GKS++L TL R+ E+ G +L+DG D+ G+ +
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 982 LRKILGIIPQSPVLFS---------GTVRFN-------LDPFSEHS--DADLWEALERAH 1023
+R+ +G++ Q P F ++ N LD E S A+LW
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN-----E 137
Query: 1024 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1083
+KD + + GL S GQ+Q L ++RA+ +L++DE +A+D +
Sbjct: 138 VKDRLDKPGGGL-----------SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLA 186
Query: 1084 IQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDS----GRVLEYDTPEELLSN 1133
I+ I E + T++I+ H + + D L++ GR++E D E++ SN
Sbjct: 187 IEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSN 243
|
Length = 258 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 26/198 (13%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISA---MLGELPPVSDASAVI------------ 347
L NINL IP + AI+G +G GK++ I M+ +P V +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 348 ----RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 403
R + V Q F ++ DN+ +G + +K + + D+ +V +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 404 -IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK- 461
+ + +++SGGQ+QR+ +ARA+ +N DV + D+P SALD R++ + + +L K
Sbjct: 148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELIL--KLKEKY 205
Query: 462 TRVLVTNQLHFLSQVDRI 479
T V+VT H + Q R+
Sbjct: 206 TIVIVT---HNMQQAARV 220
|
Length = 259 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 3e-09
Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 31/216 (14%)
Query: 307 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--------------VSDAS--AVIRGT 350
+L I G + I+G +G GK++++ + + P +SDA V R
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 351 VAYVPQ-VSWIFNATVRDNILFGSAFE--PA--RYEKAIDVTSLQHDLDLLPGGDVTEIG 405
+A V Q + + + TV DN FG A R EKA+D Q L+ E+
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALR-QVGLENYAHSYPDEL- 165
Query: 406 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRV 464
SGG +QRV +ARA+ N D+ + D+ SALD + ++ D ++ + +T V
Sbjct: 166 ------SGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIV 219
Query: 465 LVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
+++ L ++ DRI ++ G V + GT +++ NN
Sbjct: 220 FISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255
|
Length = 400 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-09
Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 31/231 (13%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
+ +SF + + VGI G G G+S ++ + + + GRIL++G D+ R
Sbjct: 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331
Query: 984 KILGI--IPQSP-----VLFSGTVRFNL-------DPFSEHSDADLWEALERAHLKDAIR 1029
+ LG+ +P+ VL ++ NL PFS D A+ R ++ I
Sbjct: 332 RRLGLAYVPEDRHGHGLVL-DLSLAENLVLGRHDKKPFSRGGFLD-RRAI-RKFARELIE 388
Query: 1030 RNSL---GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1086
+ DA + S G +Q L L+R L RR +L+ + T +DV I +
Sbjct: 389 EFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHE 444
Query: 1087 TIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVL-----EYDTPEEL 1130
+ E + +L+I+ L+ I++ DRI ++ GR++ E T EE+
Sbjct: 445 RLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEATREEI 495
|
Length = 501 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-09
Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 23/198 (11%)
Query: 296 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDAS 344
S ++ + ++ + G ++G G GK+++ +LG P V +
Sbjct: 50 SYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA 109
Query: 345 AVIRGTVAYVPQVSWI-FNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 402
+ R + VPQ + TVR+N+L FG F + E + SL L D
Sbjct: 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADA- 168
Query: 403 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GK 461
R ++SGG K+R+++ARA+ ++ + I D+P + LD H +++R +R L+ GK
Sbjct: 169 ----RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGK 223
Query: 462 TRVLVTNQLHFLSQVDRI 479
T +L T HF+ + +R+
Sbjct: 224 TILLTT---HFMEEAERL 238
|
Length = 340 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 64/252 (25%), Positives = 114/252 (45%), Gaps = 44/252 (17%)
Query: 284 AISIRNGYFSW--DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 341
I + + +F + +KA L ++L IP GS A++G G GK++L+ + G P
Sbjct: 4 IIEVEDLHFRYKDGTKA----LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR 59
Query: 342 DASAV------------IRGTVAYVPQV--SWIFNATVRDNILFG------SAFE-PARY 380
V +R V V Q +F++TV D++ FG E R
Sbjct: 60 GRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV 119
Query: 381 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 440
E+A+ + D P ++S GQK+RV++A + + DV + D+P++
Sbjct: 120 EEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAY 168
Query: 441 LDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 499
LD + + R GKT ++ T+ + ++ D++I++ EG V EG L++
Sbjct: 169 LDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTD- 227
Query: 500 GELFQKLMENAG 511
+ ++E AG
Sbjct: 228 ----EDIVEQAG 235
|
Length = 274 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 41/189 (21%)
Query: 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--RGTVAYVPQV 357
R L +++ +I G + I G +G GK+SL A L L P + + ++PQ
Sbjct: 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRA-LAGLWPWGSGRIGMPEGEDLLFLPQR 72
Query: 358 SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 417
++ T+R+ +++ P DV +SGG++Q
Sbjct: 73 PYLPLGTLREQLIY-------------------------PWDDV---------LSGGEQQ 98
Query: 418 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVD 477
R++ AR + D+ SALD +++ + T + V ++ D
Sbjct: 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL-KELGI--TVISVGHRPSLWKFHD 155
Query: 478 RII-LVHEG 485
R++ L EG
Sbjct: 156 RVLDLDGEG 164
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-09
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 29/217 (13%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
L +S TI + V ++G +G GK+++LN + V RG I ++G I G
Sbjct: 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAER-- 76
Query: 984 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR---NSLGLDAQV 1039
G++ Q+ L V N+ L+ ++ A RR + + +
Sbjct: 77 ---GVVFQNEALLPWLNVIDNVA-----------FGLQLRGIEKAQRREIAHQMLALVGL 122
Query: 1040 SEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 1095
A + S G RQ + ++RAL ++L+LDE A+D T +Q+ + + ++
Sbjct: 123 EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET 182
Query: 1096 --TMLIIAHRLN-TIIDCDRILLLDS--GRVLEYDTP 1127
+L+I H + + R+++L GRV+E
Sbjct: 183 GKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219
|
Length = 259 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 69/252 (27%), Positives = 115/252 (45%), Gaps = 51/252 (20%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-GRILIDG--FDIAKF---- 977
L ++ P + + ++G +GAGKSS+L L ++E+ R G + I G FD +K
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVL-NLLEMPRSGTLNIAGNHFDFSKTPSDK 75
Query: 978 GLMDLRKILGIIPQS----PVLFSGTVRFNL----------DPFSEHSDADLWEALERAH 1023
+ +LR+ +G++ Q P L TV+ NL + A+ + LER
Sbjct: 76 AIRELRRNVGMVFQQYNLWPHL---TVQQNLIEAPCRVLGLSKDQALARAE--KLLERLR 130
Query: 1024 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1083
LK R L L S GQ+Q ++++RAL+ ++L+ DE TAA+D A
Sbjct: 131 LKPYADRFPLHL-----------SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 1084 IQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1141
I IRE ++ T +I+ H + R++ +++G ++E S F+
Sbjct: 180 IVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD--------ASCFT-- 229
Query: 1142 VQSTGAANAQYL 1153
Q A YL
Sbjct: 230 -QPQTEAFKNYL 240
|
Length = 242 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 3e-09
Identities = 51/222 (22%), Positives = 106/222 (47%), Gaps = 19/222 (8%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 978
L G+ ++ ++G +G GKS+ L TL R+ +L G + + G +I
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 979 LMDLRKILGIIPQSPVLFSGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNS 1032
++ LRK +G++ Q P F ++ N L + + D EA+E + + AI
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLD--EAVETSLKQAAIWDE- 137
Query: 1033 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 1092
+ + E+ + S GQ+Q + ++R L + +++LDE T+A+D + I+ + E
Sbjct: 138 --VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR 195
Query: 1093 KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
T++++ H ++ D+ +G ++E+ +++ N
Sbjct: 196 DQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLN 237
|
Length = 252 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 4e-09
Identities = 60/228 (26%), Positives = 102/228 (44%), Gaps = 31/228 (13%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
PVL +SF + + + G TG+GKSS+L + +E G+I G
Sbjct: 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR----------- 488
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA-HLKDAIRRNSLGLDAQVSEA 1042
+ PQ+ + GT++ N+ F D + ++ +A L++ I + E
Sbjct: 489 --ISFSPQTSWIMPGTIKDNI-IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEG 545
Query: 1043 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------- 1095
G S GQR +SL+RA+ + + + +LD +DV T+ +E F+SC
Sbjct: 546 GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTE-------KEIFESCLCKLMSN 598
Query: 1096 -TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1142
T +++ +L + D+ILLL G Y T E L + FS ++
Sbjct: 599 KTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSE-LQAKRPDFSSLL 645
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 4e-09
Identities = 58/233 (24%), Positives = 108/233 (46%), Gaps = 41/233 (17%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKFG 978
L ++ +IP ++ I+G +G GKS+ + TL ++++ G + +G +I K
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 979 LMDLRKILGII-------PQS--------PVLFSGTVRFNLDPFSEHS--DADLWEALER 1021
L++LRK +G++ PQS P + + L E S D LW+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWD---- 143
Query: 1022 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1081
+KD + +L L S GQ+Q L ++RAL +L++DE T+A+D +
Sbjct: 144 -EVKDRLHTQALSL-----------SGGQQQRLCIARALATNPDVLLMDEPTSALDPVST 191
Query: 1082 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
I++ I + + T++I+ H + D+ G ++E + ++ SN
Sbjct: 192 RKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244
|
Length = 259 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 23/169 (13%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKT-------SLISAMLGEL----PPVSDASAV 346
+ L NI+ + G I G +G GK+ SLIS G L +S
Sbjct: 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPE 77
Query: 347 I-RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL--LPGGDVTE 403
I R V+Y Q +F TV DN++F + D DL+ LP
Sbjct: 78 IYRQQVSYCAQTPTLFGDTVYDNLIFPWQIR----NQQPDPAIFLDDLERFALP----DT 129
Query: 404 IGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 451
I + + +SGG+KQR+S+ R + V + D+ SALD V +
Sbjct: 130 ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE 178
|
Length = 225 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 5e-09
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 45/199 (22%)
Query: 274 PNPPLTSGLPAISIRNGYFSW-DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 332
S IS++N S+ +A + N+ DIP G + A++G +G GK++++ +
Sbjct: 3 KTNKKISKNIIISLQNVTISYGTFEAVK----NVFCDIPRGKVTALIGPSGCGKSTVLRS 58
Query: 333 ---MLGELPPVSDASAVI-RGTVAYVPQVSWI---------------FNATVRDNILFGS 373
M + S V+ GT Y P+V + F ++ +NI FG
Sbjct: 59 LNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG- 117
Query: 374 AFEPARYEKAIDVTSLQHDLDLLPGGDVTE----------IGERGVNISGGQKQRVSMAR 423
AR + D+D L + + + E G ++SGGQ+QR+ +AR
Sbjct: 118 ----AR------INGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIAR 167
Query: 424 AVYSNSDVFIFDDPLSALD 442
+ +V + D+P SALD
Sbjct: 168 TIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-09
Identities = 61/234 (26%), Positives = 108/234 (46%), Gaps = 26/234 (11%)
Query: 928 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRK 984
G++ + + +G+VG +G GKS+ + +V+ G + G D+ +R
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRS 98
Query: 985 ILGIIPQSPVLFSGTVRFNL-----DPFSEHSDADLWEALERAHLKDAIRRNSLG---LD 1036
+ +I Q P L S R + +P + L R +KD ++ L L
Sbjct: 99 DIQMIFQDP-LASLNPRMTIGEIIAEPLRTY-----HPKLSRQEVKDRVKAMMLKVGLLP 152
Query: 1037 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTIREEF 1092
++ FS GQ Q + ++RAL+ K+++ DE +A+DV A L+Q+ RE
Sbjct: 153 NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMG 212
Query: 1093 KSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1144
S ++ IAH L + I DR+L++ G +E T +E+ N ++K + S
Sbjct: 213 LS--LIFIAHDLAVVKHIS-DRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMS 263
|
Length = 331 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 5e-09
Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 42/206 (20%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
VL +S + P + ++G GAGKS+++ + +V + G I +G LR
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---------KLR- 68
Query: 985 ILGIIPQS----PVLFSGTVRF-NLDPFSEHSDADLWEALER---AHLKDAIRRNSLGLD 1036
+G +PQ L RF L P ++ D+ AL+R HL DA
Sbjct: 69 -IGYVPQKLYLDTTLPLTVNRFLRLRPGTK--KEDILPALKRVQAGHLIDA--------- 116
Query: 1037 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTIREEF 1092
+ S G+ Q + L+RALL R ++LVLDE T VDV LI + +R E
Sbjct: 117 -----PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ-LRREL 170
Query: 1093 KSCTMLIIAHRLNTII-DCDRILLLD 1117
C +L+++H L+ ++ D +L L+
Sbjct: 171 -DCAVLMVSHDLHLVMAKTDEVLCLN 195
|
Length = 251 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 6e-09
Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 30/237 (12%)
Query: 291 YFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----------- 339
Y S + E+ L ++NL++ G + I+G G GK+++ M L P
Sbjct: 14 YESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD 73
Query: 340 VSDASAV--IRGTVAYVPQV--SWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQHD 392
SD + IR V Q + I V +++ FG P + +D
Sbjct: 74 TSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVD------- 126
Query: 393 LDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 451
+ L + E + +SGGQKQRV++A + + IFD+P + LD R+V +
Sbjct: 127 -ESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVN 185
Query: 452 RCIR--GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 506
I+ + G T +L+T+ + + DRII++ G V EGT +++ E+ +K+
Sbjct: 186 -TIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKEVEMMKKI 241
|
Length = 280 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 6e-09
Identities = 56/243 (23%), Positives = 116/243 (47%), Gaps = 27/243 (11%)
Query: 908 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
+I+F++V Y+ P +H ++ IVG+TG+GKS+++ + +++
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61
Query: 965 GRILIDGFDIA-----KFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWE 1017
G + +D I K+ + +RK +G++ Q P LF TV + ++ +L E
Sbjct: 62 GTVTVDDITITHKTKDKY-IRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDE 120
Query: 1018 ALERAH---LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1074
AH + R+ + S++ S GQ + +++ L I+VLDE TA
Sbjct: 121 VKNYAHRLLMDLGFSRDVM------SQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTA 174
Query: 1075 AVDVRTD----ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1129
+D ++ L++ +E K T+++++H +N + D ++++ G ++ +P+E
Sbjct: 175 GLDPQSKRQVMRLLKSLQTDENK--TIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232
Query: 1130 LLS 1132
L
Sbjct: 233 LFK 235
|
Length = 286 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 7e-09
Identities = 62/269 (23%), Positives = 122/269 (45%), Gaps = 56/269 (20%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE--RGR 966
I+ +++ ++ + VL +SFTI + +GI+GR+GAGKS +++ L + + E GR
Sbjct: 1 IEVKNLTKKF--DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58
Query: 967 IL---------------------------------IDGFDIAKFGLMDLRKILGIIPQSP 993
I+ +D ++++ +RK + I+ Q
Sbjct: 59 IIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT 118
Query: 994 VLFSGTVRFNLDPFSEHSDADLWEALERAHL--KDAIRR-----NSLGLDAQVSEAGENF 1046
G LD ++ EALE K+A+ R + L +++ +
Sbjct: 119 FALYGDDTV-LD--------NVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDL 169
Query: 1047 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTMLIIAHRL 1104
S G++Q + L+R L + + + DE T +D +T L+ + E K+ +M++ +H
Sbjct: 170 SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP 229
Query: 1105 NTIID-CDRILLLDSGRVLEYDTPEELLS 1132
I D D+ + L++G + E TP+E+++
Sbjct: 230 EVIEDLSDKAIWLENGEIKEEGTPDEVVA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 7e-09
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 306 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--RGTVAYVPQVSWIFNA 363
++ ++P G+ + I G G GK+SL +LGEL PV +G + YVPQ ++
Sbjct: 471 LSFEVPSGNNLLICGPNGCGKSSLFR-ILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLG 529
Query: 364 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN----------ISG 413
T+RD I++ + E + + + L+ LD + +T I ER +SG
Sbjct: 530 TLRDQIIYPDSSEDMK-RRGLSDKDLEQILDNV---QLTHILEREGGWSAVQDWMDVLSG 585
Query: 414 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 453
G+KQR++MAR Y I D+ SA+ V ++ C
Sbjct: 586 GEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC 625
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 7e-09
Identities = 42/209 (20%), Positives = 80/209 (38%), Gaps = 74/209 (35%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 344
I + N ++ + L +I+L I G + +VG G GK++L+ + GEL P
Sbjct: 1 IELENLSKTYG---GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE--- 54
Query: 345 AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
G V +GS + +E+
Sbjct: 55 ----GIVT------------------WGSTVKIGYFEQ---------------------- 70
Query: 405 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV-------FDRCIRGE 457
+SGG+K R+++A+ + N ++ + D+P + LD + + +
Sbjct: 71 ------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE-SIEALEEALKEYPGTV--- 120
Query: 458 LSGKTRVLVTNQLHFLSQV-DRIILVHEG 485
+LV++ +FL QV +II + +G
Sbjct: 121 ------ILVSHDRYFLDQVATKIIELEDG 143
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 8e-09
Identities = 57/220 (25%), Positives = 106/220 (48%), Gaps = 33/220 (15%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLR 983
L G++ TI + + ++G +G GKS++LN LI G G +++ +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLN-------------LISGLAQPTSGGVILEGK 47
Query: 984 KILGIIPQSPVLFSG-------TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 1036
+I P V+F TVR N+ + DL ++ RA +++ I +GL
Sbjct: 48 QITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHI--ALVGLT 105
Query: 1037 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKS 1094
+ S G +Q ++++RAL R K+L+LDE A+D T +Q+ + + E
Sbjct: 106 EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 1095 CTMLIIAHRLN-TIIDCDRILLLDS------GRVLEYDTP 1127
T+L++ H ++ ++ DR+++L + G++LE P
Sbjct: 166 VTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVPFP 205
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (140), Expect = 8e-09
Identities = 59/262 (22%), Positives = 116/262 (44%), Gaps = 28/262 (10%)
Query: 909 IKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 965
IKFE V Y+P P L + + ++G TG+GKS++L L +++ G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 966 RILIDGFDIAKFG----LMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEAL 1019
++ + ++ + +RK +G++ Q P LF TV ++ +
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDV----AFGPQNFGIPK 117
Query: 1020 ERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1078
E+A A + +GL + E S GQ + ++++ L ++LVLDE TA +D
Sbjct: 118 EKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177
Query: 1079 RTDALIQKTIREEFKSC-TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN--- 1133
+ + + +S T++++ H ++ + D D + LL+ G ++ TP ++
Sbjct: 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDF 237
Query: 1134 ---------EGSSFSKMVQSTG 1146
+ + F+ +Q TG
Sbjct: 238 LKAHELGVPKATHFADQLQKTG 259
|
Length = 288 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (140), Expect = 8e-09
Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 30/217 (13%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 346
L +I+L++ GS A++G TG GK++L+ + G L P V
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 347 IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
+R V V Q S +F TV ++ FG EKA + + L+++ G E
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAA--EKLEMV--GLADEF 137
Query: 405 GERG-VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTR 463
E+ +SGGQ +RV++A + +V + D+P + LD ++ SG+T
Sbjct: 138 WEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTV 197
Query: 464 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL 496
VLVT H + V D + L+ +G + GT D+
Sbjct: 198 VLVT---HLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
Length = 288 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 8e-09
Identities = 56/222 (25%), Positives = 109/222 (49%), Gaps = 24/222 (10%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988
+S TI + ++G +G GKS++L L + G+I++DG D++ + ++ + +
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSH--VPPYQRPINM 95
Query: 989 IPQSPVLFSG-TVRFNL------DPFSEHSDAD-LWEALERAHLKDAIRRNSLGLDAQVS 1040
+ QS LF TV N+ D + A + E L H+++ +R L
Sbjct: 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQL----- 150
Query: 1041 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTML 1098
S GQRQ ++L+R+L +R K+L+LDE A+D + +Q + + E T +
Sbjct: 151 ------SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCV 204
Query: 1099 IIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1139
++ H + + RI +++ G+ ++ PEE+ + + +S
Sbjct: 205 MVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS 246
|
Length = 377 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 8e-09
Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 29/228 (12%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+FE V Y L G++F + P + + G +GAGKS++L + I G+I
Sbjct: 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60
Query: 969 IDGFDIAKFGLMD---LRKILGIIPQS-PVLFSGTVRFNLD-PFSEHSDADLWEALERAH 1023
G DI + + LR+ +G+I Q +L TV N+ P + A
Sbjct: 61 FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPL----------IIAGAS 110
Query: 1024 LKDAIRRNSLGLD-AQVSEAGENFSV----GQRQLLSLSRALLRRSKILVLDEATAAVDV 1078
D RR S LD + + +NF + G++Q + ++RA++ + +L+ DE T +D
Sbjct: 111 GDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD- 169
Query: 1079 RTDALIQKTIR--EEFK--SCTMLIIAHRLNTIIDCD-RILLLDSGRV 1121
DAL + +R EEF T+L+ H + I R+L L G +
Sbjct: 170 --DALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 9e-09
Identities = 58/241 (24%), Positives = 108/241 (44%), Gaps = 40/241 (16%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 341
+ +R F+ + R NI+L +P G + AI+G +G GKT+L+ + G++ P
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 342 -----DASAVIRGTVAYV-PQVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTS 388
+ A+ R + V ++S +F + V DN+ + E + + ++
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY-PLREHTQLPAPLLHST 123
Query: 389 LQHDLDLLPGGDVTEIGERGV------NISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442
+ L+ +G RG +SGG +R ++ARA+ D+ +FD+P D
Sbjct: 124 VMMKLE--------AVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175
Query: 443 AHVGRQVFDRCIRGELS---GKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSN 498
+ V + I EL+ G T V+V++ + LS D +V + + G+ + L
Sbjct: 176 P-ITMGVLVKLI-SELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233
Query: 499 N 499
N
Sbjct: 234 N 234
|
Length = 269 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 9e-09
Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 12/218 (5%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
V L+ IP I+G G GKS++L TL R++ G + +DG I + ++ +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 985 ILGIIPQSPVLFSGTVRFNLDPFSEHSDADL---WEALERAHLKDAIRRNSLGLDAQVSE 1041
+G++ Q+ L + L W + + A++ + G+ +
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQ--ATGITHLADQ 139
Query: 1042 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD----ALIQKTIREEFKSCTM 1097
+ + S GQRQ ++ L + + I++LDE T +D+ L+ + RE K T+
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE--KGYTL 197
Query: 1098 LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
+ H LN ++ L G+++ P+E+++ E
Sbjct: 198 AAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAE 235
|
Length = 265 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 1e-08
Identities = 42/160 (26%), Positives = 85/160 (53%), Gaps = 13/160 (8%)
Query: 347 IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE---KAIDVTSLQHDLDLLPGGDVTE 403
+R + V Q +FN ++ +NI FG E A E +A ++ ++ LP T
Sbjct: 1294 LRNLFSIVSQEPMLFNMSIYENIKFGK--EDATREDVKRACKFAAIDEFIESLPNKYDTN 1351
Query: 404 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSGK 461
+G G ++SGGQKQR+++ARA+ + + D+ S+LD++ ++ ++ I + + K
Sbjct: 1352 VGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSN-SEKLIEKTIVDIKDKADK 1410
Query: 462 TRVLVTNQLHFLSQVDRIILVHE-----GMVKEEGTFEDL 496
T + + +++ + + D+I++ + V+ GT E+L
Sbjct: 1411 TIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEEL 1450
|
Length = 1466 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 23/195 (11%)
Query: 318 IVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSWIFNA-------TV 365
++G +G GKT+L+ +L S ++ G V VP ++ +F + TV
Sbjct: 1 LLGPSGCGKTTLLR-LLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTV 59
Query: 366 RDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG-VNISGGQKQRVSMARA 424
+N+ F + K L+ L + E +R +SGGQ+QRV++ARA
Sbjct: 60 EENVAF-----GLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARA 114
Query: 425 VYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVT-NQLHFLSQVDRIIL 481
+ + + D+PLSALD + Q+ + I+ +L G T V VT +Q ++ DRI +
Sbjct: 115 LVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAI 173
Query: 482 VHEGMVKEEGTFEDL 496
+ +G + + GT E++
Sbjct: 174 MRKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 42/247 (17%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 346
E L ++NL I GS A +G TG GK++++ + G P + V
Sbjct: 19 EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK 78
Query: 347 ----IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD 400
IR V V Q S +F TV ++ FG E+A +L + L G
Sbjct: 79 DIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA---EALAREKLALVGIS 135
Query: 401 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 460
+ + +SGGQ +RV++A + + + D+P + LD +++ + SG
Sbjct: 136 ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSG 195
Query: 461 KTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEY 516
T VLVT H + V D + ++ +G + G +D +FQ + ++
Sbjct: 196 MTIVLVT---HLMDDVANYADFVYVLEKGKLVLSGKPKD------IFQDV--------DF 238
Query: 517 VEEKEDG 523
+EEK+ G
Sbjct: 239 LEEKQLG 245
|
Length = 280 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-08
Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 38/215 (17%)
Query: 297 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ 356
ER L N+NL+I G +VA+VG +G GKT+L+ +LG RG Y P
Sbjct: 393 VIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA--------QKGRGEEKYRPD 444
Query: 357 VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPG---GDVTEIGERGVN--- 410
+ V SA P YE ++ L G V + G++
Sbjct: 445 -----SGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAV 499
Query: 411 --------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELS- 459
+S GQK+R +A+ + +V + D+ AH+ R R EL+
Sbjct: 500 LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE----FAAHLDELTAVRVARKISELAR 555
Query: 460 --GKTRVLVTNQLHFLSQV--DRIILVHEGMVKEE 490
G T ++VT++ + + D +ILV G V
Sbjct: 556 EAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVN 590
|
Length = 593 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 67/235 (28%), Positives = 117/235 (49%), Gaps = 24/235 (10%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-VELER---GRILIDGFDIAKF--- 977
VL+ +S ++ + V ++GR+G GKS TL R+ V LE G + G +AK
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKS----TLARLLVGLESPSQGNVSWRGEPLAKLNRA 82
Query: 978 GLMDLRKILGIIPQ---SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 1034
R+ + ++ Q S V TVR + H L +A ER + R ++
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL-LSLDKA-ERLARASEMLR-AVD 139
Query: 1035 LDAQV-SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA-LIQ--KTIRE 1090
LD V + S GQ Q + L+RAL K+L+LDEA + +D+ A +I+ K +++
Sbjct: 140 LDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ 199
Query: 1091 EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1144
+F + L I H L + C R++++D+G+++E + L+ S +++Q+
Sbjct: 200 QFGT-ACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTFS-SPAGRVLQN 252
|
Length = 268 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 52/222 (23%), Positives = 103/222 (46%), Gaps = 30/222 (13%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-------------- 350
+++L++ G +V ++G G GKT+L + + G P S + + RG
Sbjct: 22 DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP-SSGTVIFRGRDITGLPPHRIARLG 80
Query: 351 VAYVPQVSWIF-NATVRDNIL--------FGSAFEPARYEKAIDVTSLQHDLDLLPGGDV 401
+A Q++ +F TV +N+ R K + + +LL +
Sbjct: 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEERE-ARERARELLEFVGL 139
Query: 402 TE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--EL 458
E N+S GQ++R+ +ARA+ + + + D+P + L+ ++ + IR +
Sbjct: 140 GELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL-IRELRDR 198
Query: 459 SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
G T +L+ + + + + DRI++++ G V EGT E++ NN
Sbjct: 199 GGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN 240
|
Length = 250 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 58/277 (20%), Positives = 105/277 (37%), Gaps = 66/277 (23%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--ELPPVSDASAVIRGTVAYVPQVSWI 360
L NI+ I G ++ I+G +G GK+ L+ + G + P + +I VA + ++
Sbjct: 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP--TSGRIIY-HVALCEKCGYV 72
Query: 361 --------------------------------FNATVRDNILFGSAFEPARYEKAID--- 385
R I+ F + +D
Sbjct: 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVL 132
Query: 386 ----------VTSLQHDLDLLPGGDVTEIGERGVNI----SGGQKQRVSMARAVYSNSDV 431
++ +DL+ ++ ++ R +I SGG+KQRV +AR + +
Sbjct: 133 EALEEIGYEGKEAVGRAVDLI---EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFL 189
Query: 432 FIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKE 489
F+ D+P LD + V + + SG + VL ++ + + D+ I + G +KE
Sbjct: 190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKE 249
Query: 490 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETV 526
EGT +++ ME E E E GE +
Sbjct: 250 EGTPDEVVA------VFMEGV-SEVEKECEVEVGEPI 279
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 33/235 (14%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--------- 975
VL G+S D + I+G +G+GKS+ L + + + G I ++G +I
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 976 ----KFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEH----SDADLWEALERA-HLK 1025
K L LR LG++ Q L+S TV N+ H S A EA+ERA
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKA---EAIERAEKYL 137
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1085
+ G+ + + S GQ+Q ++++RAL ++++ DE T+A+D +
Sbjct: 138 AKV-----GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVL 192
Query: 1086 KTIR---EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1136
K ++ EE + TM+++ H + D ++ L G++ E PE++ N S
Sbjct: 193 KVMQDLAEEGR--TMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQS 245
|
Length = 256 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 56/268 (20%), Positives = 103/268 (38%), Gaps = 36/268 (13%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVIRGTVAYVPQ 356
NI+ ++P G + ++G G GKT+ +LG L P S I+ + Y+P+
Sbjct: 20 NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPE 79
Query: 357 VSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGG 414
++ TV D + + + E KA LQ L ++ + + +S G
Sbjct: 80 ERGLYPKMTVEDQLKYLA--ELKGMPKAEIQKKLQ---AWLERLEIVGKKTKKIKELSKG 134
Query: 415 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 474
+Q++ AV ++ I D+P S LD + D + G T + + H +
Sbjct: 135 NQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSS---HRME 191
Query: 475 QV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDN-- 528
V DR++++ +G GT ED+ + GK +E E + N
Sbjct: 192 HVEELCDRLLMLKKGQTVLYGTVEDIRR----------SFGKKRLVIESDLSLEELANIP 241
Query: 529 --KTSKPAANGVDNDLPKEASDTRKTKE 554
+G + + R+ +
Sbjct: 242 GILKITETKDGSWRIQIENETVAREIFQ 269
|
Length = 300 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 37/223 (16%)
Query: 313 GSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASA---VIR-----GTV 351
G +AI+G G GK++L + G + P S D S IR
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNT 98
Query: 352 AYVP--QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 409
+ P ++ I + +R N R ++ + + + LLP D
Sbjct: 99 SLNPRLRIGQILDFPLRLNT---DLEPEQRRKQIFETLRM---VGLLP--DHANYYPH-- 148
Query: 410 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTN 468
++ GQKQRV++ARA+ + I D+ L++LD + Q+ + + E G + + VT
Sbjct: 149 MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQ 208
Query: 469 QLHFLSQV-DRIILVHEGMVKEEGTFEDL--SNNGELFQKLME 508
+ + + D+++++HEG V E G+ D+ S EL ++L+E
Sbjct: 209 HIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIE 251
|
Length = 267 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 2e-08
Identities = 46/182 (25%), Positives = 92/182 (50%), Gaps = 20/182 (10%)
Query: 940 GIVGRTGAGKSSMLNTLFRIVELERG-----RILIDGFDIAKFGL--MDLRKILGIIPQS 992
G +G +G GKS++L +L R+ +L +G + G D+ G+ + +R+ +G++ Q
Sbjct: 38 GFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97
Query: 993 PVLFSGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 1046
P FS ++ N L+ + + AL+ A L D ++ ++ +G +
Sbjct: 98 PNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSL 150
Query: 1047 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 1106
S GQ+Q L ++RA+ ++L+LDE +A+D +++ + E K T+ ++ H +
Sbjct: 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQ 210
Query: 1107 II 1108
I
Sbjct: 211 AI 212
|
Length = 261 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 40/235 (17%)
Query: 928 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI-- 985
++ + + V ++G GAGK+++ N L + G IL+ G I GL +I
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIE--GLPG-HQIAR 79
Query: 986 LGIIP--QSPVLF-SGTVRFNL------------------DPFSEHSDADLWEALERAHL 1024
+G++ Q LF TV NL P +++ EAL+RA
Sbjct: 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAES---EALDRA-- 134
Query: 1025 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT---- 1080
A +GL + N + GQ++ L ++R ++ + +IL+LDE A ++ +
Sbjct: 135 --ATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL 192
Query: 1081 DALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
D LI + +R E T+L+I H + ++ DRI +++ G L TPEE+ +N
Sbjct: 193 DELIAE-LRNEHN-VTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNP 245
|
Length = 255 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 23/213 (10%)
Query: 923 PPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 980
PV L ++ T+ P + ++G GAGKS+++ L I E +G I I+ + K
Sbjct: 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK 75
Query: 981 DLRKI-LGIIPQS-PVLFSGTVRFNLDPFSEHSDADLW--------EALERAHLKDAIRR 1030
++ +GII Q V+ TV NL H + E RA A+
Sbjct: 76 LAAQLGIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWREMRVRA----AMML 130
Query: 1031 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV-DVRTDAL--IQKT 1087
+GL + E N S+ +Q+L +++ L+ +K++++DE T+++ + D L I
Sbjct: 131 LRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ 190
Query: 1088 IREEFKSCTMLIIAHRLNTIID-CDRILLLDSG 1119
+R+E + ++ I+H+L I CDR ++ G
Sbjct: 191 LRKEGTA--IVYISHKLAEIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 73/308 (23%), Positives = 137/308 (44%), Gaps = 42/308 (13%)
Query: 927 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI-DG---FDIAKFGLMDL 982
H S I + ++G +G+GKS++L + + + RG +L+ DG D+A L
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 983 RKI-----------LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 1031
R++ ++P V V F L+ A E +R + +
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVE--ENVAFGLE-MQGMPKA---ERRKRVDEQLEL--- 151
Query: 1032 SLGLDA-QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRT---DALI- 1084
+GL + GE S G +Q + L+RA + IL++DE +A+D +RT D L+
Sbjct: 152 -VGLAQWADRKPGE-LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLE 209
Query: 1085 -QKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSK-M 1141
Q +++ T++ ++H L+ + +RI +++ GR++++ TPEE++ N + +
Sbjct: 210 LQSKLKK-----TIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADF 264
Query: 1142 VQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAA-AQYALAVSLTSS 1200
V T N R L+ K+ E WL ++ A L V+ ++
Sbjct: 265 VAHTNPLNVLTARDLMRPLTTLEKVDGEWCVSKRYDTWLKTADKQVRRAAAGLPVAAWAA 324
Query: 1201 HNDLQRLE 1208
+++ LE
Sbjct: 325 EQEVESLE 332
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 24/166 (14%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM------------LGEL----PPVSD 342
E+ L +I + IP + A++G +G GK++L+ G++ + D
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77
Query: 343 ASA---VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLL 396
+ A +R + V Q F ++ +N+ +G + +K +D SL+
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD 137
Query: 397 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442
D + + +++SGGQ+QR+ +AR + N +V + D+P SALD
Sbjct: 138 EVKD--RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181
|
Length = 253 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 45/243 (18%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL------------FRIVELERGRILIDGF 972
+L LS I P ++GR GAGKS++L L R+ G + ++G
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARV----TGDVTLNGE 71
Query: 973 DIAKFGLMDLRKILGIIPQS--PVL-FSGTVRFNLDPF--------SEHSDADL-WEALE 1020
+A L ++ ++PQ+ P FS L + H D ++ W+AL
Sbjct: 72 PLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALA 131
Query: 1021 RAHLKDAIRRN----SLGLDAQVSEAGENFSVGQRQLLSL--SRALLRRSKILVLDEATA 1074
A + R+ S G A+V A R L L + + L+LDE TA
Sbjct: 132 LAGATALVGRDVTTLSGGELARVQFA--------RVLAQLWPPHDAAQPPRYLLLDEPTA 183
Query: 1075 AVDVRTDALIQKTIREEFKSCTM--LIIAHRLNTII-DCDRILLLDSGRVLEYDTPEELL 1131
A+D+ + T+R + + L I H N DRI +L G ++ + P ++L
Sbjct: 184 ALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
Query: 1132 SNE 1134
+
Sbjct: 244 TPA 246
|
Length = 272 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 4e-08
Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 23/229 (10%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-- 982
VL G+S I + V IVG +G+GKS+++N L + + G + G D+A L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 983 --RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 1039
R+ G I Q L S T N++ + ++ + + L RA + ++R LGL+ +V
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQ--ELLQR--LGLEDRV 138
Query: 1040 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA---LIQKTIREEFKSCT 1096
S GQ+Q +S++RAL+ ++++ DE T A+D + I +R+ + T
Sbjct: 139 EYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD--RGHT 196
Query: 1097 MLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1145
++I+ H +R++ + G E++ N + V
Sbjct: 197 VIIVTHDPQVAAQAERVIEIRDG---------EIVRNPPAQEKVNVAGG 236
|
Length = 648 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-08
Identities = 89/374 (23%), Positives = 150/374 (40%), Gaps = 76/374 (20%)
Query: 777 RAYKAYDRMADINGKSMDKNI-RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 835
RA ++ + + + +I R ++ A W I + GL+ ++ + G
Sbjct: 205 RAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL-----GW 259
Query: 836 AENQEAFASTMGLLLSYALNI----TSLLTAV-----LRLASLAENSLNAVERVGNYIEL 886
A+ A+T Y+L + T LL+AV L A +A N LN +
Sbjct: 260 ADTN--VAAT------YSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALA------ 305
Query: 887 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVG 943
P +A + P W + ++ +V Y+ + P+ + TI + + ++G
Sbjct: 306 PYKAEF--PRPQAFPDWQT---LELRNVTFAYQDNGFSVGPI----NLTIKRGELLFLIG 356
Query: 944 RTGAGKS--SMLNT-LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTV 1000
G+GKS +ML T L++ G IL+DG + D RK+ + LF
Sbjct: 357 GNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQL- 412
Query: 1001 RFNLDPFSEHSDADLWEA-LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1059
L P + ++ L E LER + + D ++S S GQ++ L+L A
Sbjct: 413 ---LGPEGKPANPALVEKWLERLKMAHKLELE----DGRISNL--KLSKGQKKRLALLLA 463
Query: 1060 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF----------KSCTMLIIAHRLNTIID 1109
L IL+LDE A D R EF T+ I+H + I
Sbjct: 464 LAEERDILLLDEWAADQD--------PHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH 515
Query: 1110 CDRILLLDSGRVLE 1123
DR+L + +G++ E
Sbjct: 516 ADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 4e-08
Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 32/201 (15%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPP--VSDASAVIRGTVAYVP--- 355
L I+LD + A++G +G GK++ + + + +L P + +RG Y P
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 356 ------QVSWIFNA------TVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLLPGGD 400
QV +F ++ +N+++G + + +D TSL+ +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQ---AAIWDE 137
Query: 401 VTE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 459
V + + E +++SGGQ+QRV +AR + DV + D+P SALD Q+ + + EL
Sbjct: 138 VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLL--ELR 195
Query: 460 GK-TRVLVTNQLHFLSQVDRI 479
+ T +LVT H + Q RI
Sbjct: 196 DQYTIILVT---HSMHQASRI 213
|
Length = 252 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 4e-08
Identities = 56/225 (24%), Positives = 88/225 (39%), Gaps = 33/225 (14%)
Query: 912 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 971
E +R R VL L+ I P D V +VG++GAGK+ TL R++ G G
Sbjct: 385 ESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKT----TLLRMIL---GAQKGRG 437
Query: 972 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDP--FSEH-----SDADLWEA-LERAH 1023
+ + D K+ L G EH D + L RA
Sbjct: 438 EEKYR---PDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAG 494
Query: 1024 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1083
L DA+ S GQ++ L++ L R +L++DE A +D T
Sbjct: 495 LSDAVLYRR---------KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVR 545
Query: 1084 IQKTIRE---EFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLE 1123
+ + I E E T++++ HR + D ++L+ G+V
Sbjct: 546 VARKISELAREAGI-TLIVVTHRPEVGNALRPDTLILVGYGKVPV 589
|
Length = 593 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 4e-08
Identities = 69/247 (27%), Positives = 104/247 (42%), Gaps = 50/247 (20%)
Query: 270 KILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTS 328
K P P G P IS + F + P L N+N I + S +A+VG G GK++
Sbjct: 494 KFEFPTPDDRPGPPIISFSDASFGYPGG---PLLFKNLNFGIDLDSRIAMVGPNGIGKST 550
Query: 329 LISAMLGELPPVSDASAVIRGTVAYVPQVSW-IFNATVRDNILFGSAFEPARYEKAIDVT 387
++ + GEL P S GTV +V +F+ D + S
Sbjct: 551 ILKLISGELQPSS-------GTVFRSAKVRMAVFSQHHVDGLDLSS-------------N 590
Query: 388 SLQHDLDLLPGGDVTE------IGERGVN----------ISGGQKQRVSMARAVYSNSDV 431
L + + PG V E +G GV +SGGQK RV+ A+ + +
Sbjct: 591 PLLYMMRCFPG--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 648
Query: 432 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL-VTNQLHFLS-QVDRIILVHEGMVKE 489
+ D+P + LD + I+G + + VL V++ H +S VD + +V EG V
Sbjct: 649 LLLDEPSNHLDL----DAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTP 704
Query: 490 -EGTFED 495
GTF D
Sbjct: 705 FHGTFHD 711
|
Length = 718 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 4e-08
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 31/256 (12%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS---------------------AMLGEL 337
E L N +L + ++G TG GK+++I A L ++
Sbjct: 23 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKI 82
Query: 338 PPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLP 397
V I G V P+ +F T+ +I FG ++A L LP
Sbjct: 83 KEVKRLRKEI-GLVFQFPEYQ-LFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP 140
Query: 398 GGDVTEIGERG-VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR- 455
+ +R +SGGQK+RV++A + + + + D+P LD + R
Sbjct: 141 ----EDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 196
Query: 456 GELSGKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKME 514
+ K ++VT+ + L D +I++HEG V G+ ++ +N EL K+ + K+
Sbjct: 197 NKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELLTKIEIDPPKLY 256
Query: 515 EYVEE-KEDGETVDNK 529
+ + + K G + NK
Sbjct: 257 QLMYKLKNKGIDLLNK 272
|
Length = 289 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 37/217 (17%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 346
E+ L NI+ ++ GS VA+VG TG GK++L+ L P S +
Sbjct: 19 EKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNK 78
Query: 347 ----IRGTVAYVPQV--SWIFNATVRDNILFG----SAFEPARYEKA---IDVTSLQHDL 393
+R V+ V Q + +F TV ++ FG E EKA + L DL
Sbjct: 79 NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL 138
Query: 394 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 453
I + +SGGQ +RV++A + ++ D+P + LD +++
Sbjct: 139 ----------ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLF 188
Query: 454 IRGELSGKTRVLVTNQLHFLSQV--DRIILVHEGMVK 488
+ +G T +LVT+ + +++ D ++L H ++K
Sbjct: 189 KDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225
|
Length = 287 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 61/279 (21%), Positives = 116/279 (41%), Gaps = 54/279 (19%)
Query: 268 EEKILLPNPPLTSGLPAISIRNGYFSWDSKAERP--TLLNINLDIPVGSLVAIVGGTGEG 325
++K+ +PNP S + ++N Y +D K E L NI+ + I+G +G G
Sbjct: 7 KKKLKVPNP--LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSG 64
Query: 326 KTSLISAMLGELPP----------------------VSDASAVI------RGTVAYVPQV 357
K++L++ G + + S I R V+ V Q
Sbjct: 65 KSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQF 124
Query: 358 S--WIFNATVRDNILFGS-AFEPARYEKA------IDVTSLQHD-LDLLPGGDVTEIGER 407
+F T+ +I+FG A + E ++ L L+ P G
Sbjct: 125 PEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG-------- 176
Query: 408 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVT 467
+SGGQK+RV++A + ++ IFD+P + LD ++ + + + KT ++T
Sbjct: 177 ---LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVIT 233
Query: 468 NQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 505
+ + H L D +I++ +G + + GT ++ + +
Sbjct: 234 HTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINS 272
|
Length = 320 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 5e-08
Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 33/218 (15%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYV---------- 354
N +LDI G + ++G +G GK++L+ A+ G L PVS S +++ V
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNG-LNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 355 -----PQVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 402
+VS +F TV +N+ FG E KA + L+L+ +
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFG--LEMQGMPKAERRKRVDEQLELV---GLA 155
Query: 403 EIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELS 459
+ +R +SGG +QRV +ARA + + + + D+P SALD + Q+ D + +L
Sbjct: 156 QWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLK 215
Query: 460 GKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDL 496
KT V V++ L L +RI ++ G + + GT E++
Sbjct: 216 -KTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEI 252
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 24/225 (10%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VELER--GRILIDGFDI--AKFG 978
L + IP +G +G GKS+ L L R+ ++ R G+I +DG DI +
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 979 LMDLRKILGIIPQSPVLFSGTVRFNL--DPFSE---HSDADLWE----ALERAHLKDAIR 1029
+++LR +G++ Q P F ++ N+ P S A+L E +L +A L + ++
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 1030 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 1089
++ E G S GQ+Q L ++RA+ +++++DE +A+D A +++ I
Sbjct: 155 D-------RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207
Query: 1090 EEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1133
E ++ T++I+ H + R G ++E E++ +N
Sbjct: 208 ELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN 252
|
Length = 267 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 55/229 (24%), Positives = 98/229 (42%), Gaps = 35/229 (15%)
Query: 288 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI 347
R G +K P L N++L I G V ++G +G GK++L +LG P
Sbjct: 13 RTGGLFG-AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQ------ 65
Query: 348 RGTVAYVPQVSWIFN-----ATVRD-NILFG---SAFEPARYEKAIDVTSLQHDLDL--- 395
GTV++ Q + + A RD ++F SA P + I L+H L
Sbjct: 66 -GTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDES 124
Query: 396 -----------LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 444
+ G + + +SGGQ QR+++ARA+ + + D+ +S LD
Sbjct: 125 EQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV 184
Query: 445 VGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEE 490
+ + + R ++ G + +T+ L + R+ ++ +G + EE
Sbjct: 185 LQAVILELLRKLQQA-FGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 6e-08
Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 24/183 (13%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------DASAVIRGTV 351
ER +++ + G + I G G GKT+L+ + G L P + + +R +
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESY 73
Query: 352 AYVPQVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
+ ++ + T +N+ F F + I + L D+ +
Sbjct: 74 H--QALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIW--EALAQVGLAGLEDL-PV 128
Query: 405 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 464
G +S GQ++RV++AR S + ++I D+P +ALD G + + + V
Sbjct: 129 G----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE-GVALLTALMAAHAAQGGIV 183
Query: 465 LVT 467
L+T
Sbjct: 184 LLT 186
|
Length = 209 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 37/230 (16%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAMLGELP-------------PVSD 342
E+ L +++LDIP ++ A +G +G GK++ ++ M + + D
Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90
Query: 343 AS---AVIRGTVAYVPQVSWIFNATVRDNILFGS---AFEPARYE-KAIDVTSLQHDLDL 395
+R V V Q F ++ +N+ +G ++ E I TSL+
Sbjct: 91 PRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRK---- 146
Query: 396 LPGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 451
G E+ +R G +SGGQ+QR+ +ARA+ + +V + D+P SALD +V +
Sbjct: 147 --AGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV-E 203
Query: 452 RCIRGELSGK-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
I EL T V+VT+ + ++V R H G + E G E + N
Sbjct: 204 ELID-ELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN 252
|
Length = 267 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 6e-08
Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 38/234 (16%)
Query: 273 LPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 332
LPNP L + GY +R L +I L++ GS + ++G G GK++LI
Sbjct: 308 LPNPLLKME----KVSAGY------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKL 357
Query: 333 MLGELPPVSDASAVIRGT-VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 391
+ GEL PVS + +G + Y Q F + + P E Q
Sbjct: 358 LAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELE--------QK 409
Query: 392 DLDLLPG----GD-VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 446
D L G GD VTE R SGG+K R+ +A V+ ++ + D+P + LD +
Sbjct: 410 LRDYLGGFGFQGDKVTEETRR---FSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDM- 465
Query: 447 RQVFDRCI---RGELSGKTRVLVTNQLHFL-SQVDRIILVHEGMVKE-EGTFED 495
RQ + G L V+V++ H L S D + LVH+G V+ +G ED
Sbjct: 466 RQALTEALIDFEGAL-----VVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLED 514
|
Length = 638 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 6e-08
Identities = 67/249 (26%), Positives = 104/249 (41%), Gaps = 53/249 (21%)
Query: 874 LNAVERVG--NYIELPSEAPLVIESNRPPPGWPSSGS---------IKFEDVVLRYRPEL 922
L AV ++G ++ P PL I P P ++ ++V R+
Sbjct: 269 LAAVPQLGAMKGLDYPRRFPL-ISLEHPAKQEPPIEQDTVVDGEPILQVRNLVTRF---- 323
Query: 923 PPVLHGL--------------SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
P+ GL SF + P + + +VG +G+GKS+ L R+VE + G I+
Sbjct: 324 -PLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEII 382
Query: 969 IDGFDI---AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAH-- 1023
+G I + L LR+ + I Q P +LDP D+ + E L R H
Sbjct: 383 FNGQRIDTLSPGKLQALRRDIQFIFQDPYA-------SLDPRQTVGDS-IMEPL-RVHGL 433
Query: 1024 -LKDAIRRNSLGLDAQVSEAGEN-------FSVGQRQLLSLSRALLRRSKILVLDEATAA 1075
A L +V E+ FS GQRQ + ++RAL K+++ DEA +A
Sbjct: 434 LPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSA 493
Query: 1076 VDVRTDALI 1084
+DV I
Sbjct: 494 LDVSIRGQI 502
|
Length = 623 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 25/212 (11%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIR----- 348
E+ L ++L+I G V ++G G GK++L++A+ G+L P S D V +
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK 77
Query: 349 --GTVAYV---PQVSWIFNATVRDNILF------GSAFEPARYEKAIDVTSLQHDLDLLP 397
+A V P T+ +N+ A E+ S + L L
Sbjct: 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRS--SFRERLARLG 135
Query: 398 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 457
G + +R +SGGQ+Q +S+ A + + D+ +ALD V + +
Sbjct: 136 LGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV 195
Query: 458 LSGK-TRVLVTNQL-HFLSQVDRIILVHEGMV 487
K T ++VT+ + L +R+I++H G +
Sbjct: 196 EEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 59/229 (25%), Positives = 105/229 (45%), Gaps = 48/229 (20%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD------------ASA 345
+ L +++L +P G + A++G G GK++L+ L P S +S
Sbjct: 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSR 72
Query: 346 VIRGTVAYVPQVSWIFNA-TVRDNILFG-----------SAFEPARYEKAIDVTSLQHDL 393
+ +A +PQ TVR+ + +G SA + AR +A++ T
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT------ 126
Query: 394 DLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 452
+ + +R + ++SGGQ+QR +A + ++ V + D+P + LD + QV
Sbjct: 127 ------RINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD--INHQVELM 178
Query: 453 CIRGELS--GKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFED 495
+ EL+ GKT V V LH L+Q D ++++ G V +GT E+
Sbjct: 179 RLMRELNTQGKTVVTV---LHDLNQASRYCDHLVVLANGHVMAQGTPEE 224
|
Length = 255 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 7e-08
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 36/220 (16%)
Query: 295 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYV 354
+ K + L ++L I G +VAIVG +G GK++L+ + G P S G V +
Sbjct: 13 EGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS-------GEVLFN 65
Query: 355 PQVSWIFNATVRD---NILFGSAFEPARYEKAIDVTSLQH-DLDLLPGG-DVTEIGERGV 409
Q ++ R N G ++ + D T+L++ + LL G V E ER
Sbjct: 66 GQSLSKLSSNERAKLRNKKLGFIYQ--FHHLLPDFTALENVAMPLLIGKKSVKEAKERAY 123
Query: 410 N-----------------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 452
+SGG++QRV++ARA+ + + + D+P LD + + +FD
Sbjct: 124 EMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD- 182
Query: 453 CIRGEL---SGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 489
+ EL + ++VT+ L ++DR++ + +G +
Sbjct: 183 -LMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 7e-08
Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 47/230 (20%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP------- 355
L +++ + G L ++G G GKT+L+ + G+ P + + G
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP-QEGEVLFDGDTDLTKLPEHRIA 79
Query: 356 --------QVSWIF-NATVRDNI---------LFGSAF------EPARYEKAIDVTSLQH 391
Q +F N TVR+N+ +F S F E R ++ + L
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD 139
Query: 392 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 451
+ D L +S GQKQ + + + + + + D+P++ + + +
Sbjct: 140 ERDRLAA-----------LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAE 188
Query: 452 RCIRGELSGKTRVLVTNQ-LHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
+ L+GK +LV + F+ ++ D++ ++HEG V EG+ +++ N+
Sbjct: 189 --LLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236
|
Length = 249 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 8e-08
Identities = 45/183 (24%), Positives = 94/183 (51%), Gaps = 16/183 (8%)
Query: 933 IPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFGLMDLRKI 985
IP + +G +G GKS++L R+ +L GR+L +I ++ + LR+
Sbjct: 43 IPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQ 102
Query: 986 LGIIPQSPVLFSGTVRFNL--DPFSEHSDADLWEALERAHLKDAIRRNSL--GLDAQVSE 1041
+G++ Q P F ++ N+ P + +L E +E D++RR ++ + ++ E
Sbjct: 103 VGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVE-----DSLRRAAIWEEVKDKLKE 157
Query: 1042 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 1101
G S GQ+Q L ++RA+ + +L++DE +A+D + +++ E + T++++
Sbjct: 158 KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVT 217
Query: 1102 HRL 1104
H +
Sbjct: 218 HNM 220
|
Length = 274 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 8e-08
Identities = 68/224 (30%), Positives = 101/224 (45%), Gaps = 59/224 (26%)
Query: 900 PPGWPSSGS--IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 957
PPG P G I+ E++ + +L ++ LSF +PP VG++G GAGKS TLF
Sbjct: 313 PPG-PRLGDKVIEAENLSKGFGDKL--LIDDLSFKLPPGGIVGVIGPNGAGKS----TLF 365
Query: 958 RIV----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDP----FSE 1009
R++ + + G I I + K +D QS R LDP + E
Sbjct: 366 RMITGQEQPDSGTIKIG--ETVKLAYVD---------QS--------RDALDPNKTVWEE 406
Query: 1010 HSD-ADL-----WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1063
S D+ E RA++ R N G D Q + G+ S G+R + L++ L
Sbjct: 407 ISGGLDIIQLGKREVPSRAYVG---RFNFKGSDQQ-KKVGQ-LSGGERNRVHLAKTLKSG 461
Query: 1064 SKILVLDEATAAVDVRT-----DALIQKTIREEFKSCTMLIIAH 1102
+L+LDE T +DV T +AL EF C + +I+H
Sbjct: 462 GNVLLLDEPTNDLDVETLRALEEAL------LEFAGCAV-VISH 498
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 8e-08
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAY 353
++P L I+ +P G L+ + G G GKT+L+ + G L P + ++ + Y
Sbjct: 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTY 72
Query: 354 VPQVSWIF-------NATVRDNILFGSAFEPARYE--KAIDVTSLQHDLDLLPGGDVTEI 404
Q+ ++ T+R+N L+ F P + + SL+H +D P G
Sbjct: 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-YPCG----- 126
Query: 405 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442
+S GQK++V++ R S + +++ D+PL ALD
Sbjct: 127 -----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159
|
Length = 200 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 9e-08
Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 26/163 (15%)
Query: 296 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGT 350
S+ ER ++ + G + + G G GKT+L+ + G L P S + +A+
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 351 VAYVPQVSWIFNA-------TVRDNILFGSAF---EPARYEKAIDVTSLQHDLDLLPGGD 400
+ ++ + + +N+ F +A E A+ L DL
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAA-- 126
Query: 401 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 443
+S GQ++R+++AR S + ++I D+P +ALD
Sbjct: 127 ---------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 9e-08
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 31/158 (19%)
Query: 304 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVS 358
++ +L G + AIVG +G GK++L++ + G P S +I G V P VS
Sbjct: 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS-GRVLINGVDVTAAPPADRPVS 73
Query: 359 WIF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
+F + TV N+ G +A + E A+ L LPG
Sbjct: 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG------ 127
Query: 405 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442
+SGG++QRV++AR + + V + D+P +ALD
Sbjct: 128 -----ELSGGERQRVALARVLVRDKPVLLLDEPFAALD 160
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 9e-08
Identities = 55/244 (22%), Positives = 113/244 (46%), Gaps = 20/244 (8%)
Query: 906 SGSIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 962
S I ++V Y + P L+ S T + ++G TG+GKS+M+ ++
Sbjct: 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 963 ERGRILIDGFDIAKF-----GLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADL 1015
E G+ ++ + I + LRK +G++ Q P LF T+ ++ + +
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENK 123
Query: 1016 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1075
EA ++ + + ++ L D V + S GQ++ ++L+ + LVLDE T
Sbjct: 124 QEAYKK--VPELLKLVQLPED-YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180
Query: 1076 VDVRTDA----LIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130
+D + + L ++ +E K M + H ++ ++ D ++++ G+V+ +P E+
Sbjct: 181 LDPKGEEDFINLFERLNKEYKKRIIM--VTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
Query: 1131 LSNE 1134
SN+
Sbjct: 239 FSNQ 242
|
Length = 289 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 1e-07
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 410 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVT 467
+SGGQKQRV++ARA+ SN V + D+ SALD R + + + I EL G T VL+T
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-GLTIVLIT 198
Query: 468 NQLHFLSQV-DRIILVHEGMVKEEGTFED 495
+++ + ++ DR+ ++ G + E+GT +
Sbjct: 199 HEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
|
Length = 343 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 1e-07
Identities = 47/199 (23%), Positives = 82/199 (41%), Gaps = 54/199 (27%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRGTV 351
+++ ++ G +V I G G G+T L A+ G PP S IR +
Sbjct: 18 DVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77
Query: 352 AYVP----QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 407
AYVP + + + +V +NI S LL
Sbjct: 78 AYVPEDRKREGLVLDLSVAENIALSS---------------------LL----------- 105
Query: 408 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVT 467
SGG +Q+V +AR + + V I D+P +D +++ +GK +L++
Sbjct: 106 ----SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLIS 161
Query: 468 NQLHFLSQV-DRIILVHEG 485
++L L + DRI++++EG
Sbjct: 162 SELDELLGLCDRILVMYEG 180
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 1e-07
Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 40/210 (19%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPV--------------- 340
E+ L +INL I + A++G +G GK++ + + + +L
Sbjct: 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74
Query: 341 -SDASAV-IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAID--------VTSLQ 390
D V +R V V Q F ++ DN+ +G + +K +D +L
Sbjct: 75 DKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALW 134
Query: 391 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 450
++ ++ + + +SGGQ+QR+ +AR + DV + D+P SALD ++
Sbjct: 135 DEVK-------DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIE 187
Query: 451 DRCIRGELSGK-TRVLVTNQLHFLSQVDRI 479
D + EL + T V+VT H + Q R+
Sbjct: 188 DLMV--ELKKEYTIVIVT---HNMQQASRV 212
|
Length = 251 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 1e-07
Identities = 55/236 (23%), Positives = 105/236 (44%), Gaps = 43/236 (18%)
Query: 287 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI------------SAML 334
IRN F W + L ++NLDI + A +G +G GK++ + ++
Sbjct: 83 IRNFNF-WYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHE 141
Query: 335 GELPPVSD-------ASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR-------- 379
GE+ + +S +R + V Q F ++ DN+ +G
Sbjct: 142 GEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKI 201
Query: 380 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 439
EK++ +L ++ ++ + G +SGGQ+QR+ +ARA+ +V + D+P S
Sbjct: 202 VEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTS 254
Query: 440 ALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI----ILVHEGMVKEEG 491
ALD ++ + + EL K +++ H ++Q RI + ++G ++E G
Sbjct: 255 ALDPIATAKIEELIL--ELKKKYSIIIVT--HSMAQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 28/169 (16%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDL 982
L G+SFT+ + +VG +G GKS++ L I G + G D+ K L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 983 RKILGIIPQSPVLFSG-----TVRFNL-DPFSEHSDADLWEALERAHLKDAIRRNSLGLD 1036
R+ + I+ Q+P + V L +P ++ A ER R +L +
Sbjct: 91 RQKIQIVFQNP--YGSLNPRKKVGQILEEPLLINTSLS---AAER-------REKALAMM 138
Query: 1037 AQVSEAGEN-------FSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1078
A+V E+ FS GQRQ ++++RAL+ ++V DE +A+DV
Sbjct: 139 AKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187
|
Length = 327 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 35/188 (18%)
Query: 296 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP 355
S A L N+++ IP+ LV + G +G GK++L++ L
Sbjct: 4 SGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA------------------- 44
Query: 356 QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 415
+ I F F K I + LQ +D+ G +G++ +SGG+
Sbjct: 45 -------SGKARLISFLPKFS---RNKLIFIDQLQFLIDV--GLGYLTLGQKLSTLSGGE 92
Query: 416 KQRVSMARAVYSNSD--VFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHF 472
QRV +A ++S +FI D+P + L Q+ + I+G + G T +L+ + L
Sbjct: 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGLIDLGNTVILIEHNLDV 151
Query: 473 LSQVDRII 480
LS D II
Sbjct: 152 LSSADWII 159
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 36/195 (18%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------- 347
L N+N I G +V ++G +G GK++L+S M+G L + +
Sbjct: 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73
Query: 348 --RGTVAYVPQVSWIF-NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLLP 397
+ + + Q + +F + +V N+LF G+A A A++ + L P
Sbjct: 74 AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANA-ALERSGLDGAFHQDP 132
Query: 398 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 457
+SGGQ+ RV++ RA+ + + D+P S LD + R F + + E
Sbjct: 133 A-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVAL-RDQFRQWVFSE 180
Query: 458 L--SGKTRVLVTNQL 470
+ +G V VT+ L
Sbjct: 181 VRAAGIPTVQVTHDL 195
|
Length = 213 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 12/188 (6%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG--TVAYVP 355
+ L +N ++ G + I G +G GKTSL+ A L L P + + ++P
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRA-LAGLWPWGSGRISMPADSALLFLP 462
Query: 356 QVSWIFNATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 412
Q ++ T+R+ + + +A F A + L + L E +S
Sbjct: 463 QRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL-----DEEDRWDRVLS 517
Query: 413 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 472
GG++QR++ AR + D+ SALD +++ + ++ EL T + V ++
Sbjct: 518 GGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLY-QLLKEELPDATVISVGHRPTL 576
Query: 473 LSQVDRII 480
+ R +
Sbjct: 577 WNFHSRQL 584
|
Length = 604 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 62/261 (23%), Positives = 113/261 (43%), Gaps = 56/261 (21%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----------DASAV----IR 348
L IN++I G + AI+GG G GK++L + G L P S D S +R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 349 GTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 406
+V V Q + +F+A+V ++ FG +L+ LP +V + +
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFG-------------AVNLK-----LPEDEVRKRVD 123
Query: 407 RGVNISG--------------GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 452
+ +G GQK+RV++A + V + D+P + LD +G +
Sbjct: 124 NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDP-MGVSEIMK 182
Query: 453 CIRGELS--GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGELFQKL--- 506
+ G T ++ T+ + + D + ++ EG V +G +++ E+ +K+
Sbjct: 183 LLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLR 242
Query: 507 MENAGKMEEYVEEKEDGETVD 527
+ G + E ++EK DG D
Sbjct: 243 LPRIGHLMEILKEK-DGFVFD 262
|
Length = 283 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 31/222 (13%)
Query: 293 SWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAVIR 348
SW S R + +++ P GSL ++G G GK++L+ + G L P V A +
Sbjct: 8 SW-SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH 66
Query: 349 G--------TVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL---- 395
G VA V Q TVRD + G P R A D HD +
Sbjct: 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRI--PHRSLWAGDSP---HDAAVVDRA 121
Query: 396 LPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 454
L +++ + +R ++ +SGG++QRV +ARA+ + + D+P + LD V Q+ +
Sbjct: 122 LARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLD--VRAQLETLAL 179
Query: 455 RGELSGKTRVLVTNQLHFL----SQVDRIILVHEGMVKEEGT 492
EL+ T V V LH L S D ++++ G V G
Sbjct: 180 VRELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 48/227 (21%)
Query: 302 TLLN-INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---------- 350
TLL+ ++L P G + ++G G GK++L+ MLG P S+ ++
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLK-MLGRHQPPSEGEILLDAQPLESWSSKAF 83
Query: 351 ---VAYVPQ-VSWIFNATVRDNILFG-----------SAFEPARYEKAIDVTSLQHDLDL 395
VAY+PQ + TVR+ + G A + + E+AI + L
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL------ 137
Query: 396 LPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALD-AHVGRQVFDRC 453
+ R V+ +SGG++QR +A V +S + D+P SALD AH QV
Sbjct: 138 ------KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH---QVDVLA 188
Query: 454 IRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL 496
+ LS + + V LH ++ D ++ + G + +GT +L
Sbjct: 189 LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
Length = 265 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 31/155 (20%)
Query: 307 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT--VAYVPQ---VSWIF 361
+L + G VAI+G +G GK++L++ + G L P S S + G P VS +F
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS-GSLTLNGQDHTTTPPSRRPVSMLF 77
Query: 362 -------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 407
+ TV NI G +A + + ++ L LPG
Sbjct: 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG--------- 128
Query: 408 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442
+SGGQ+QRV++AR + + + D+P SALD
Sbjct: 129 --QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 39/181 (21%)
Query: 289 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPV------ 340
N YF + L N+NLDIP S+ A++G +G GK++ I + + +L P
Sbjct: 10 NTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGH 64
Query: 341 ---------SDASAVI--RGTVAYVPQVSWIFNATVRDNILFG--------SAFEPARYE 381
A V+ R V V Q F ++ DN+ +G F R E
Sbjct: 65 IYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVE 124
Query: 382 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 441
+++ +L ++ ++ + + +SGGQ+QR+ +AR + + +V + D+P SAL
Sbjct: 125 ESLKAAALWDEVK-------DKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSAL 177
Query: 442 D 442
D
Sbjct: 178 D 178
|
Length = 250 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 31/184 (16%)
Query: 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 342
P I IR F + + L NIN+D P + AI+G +G GK++L+ A+ VS
Sbjct: 3 PKIKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSG 59
Query: 343 AS-------------------AVIRGTVAYVPQVSWIFNATVRDNILFGSAF----EPAR 379
A +R V V Q F ++ DN+ FG +R
Sbjct: 60 ARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSR 119
Query: 380 YEKAIDVTSLQHDLDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 438
++ ++ + Q L +V + + + G+ +SGGQ+QR+ +AR + +V + D+P
Sbjct: 120 LDEVVEKSLRQAAL----WDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175
Query: 439 SALD 442
SALD
Sbjct: 176 SALD 179
|
Length = 251 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 26/217 (11%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---VSDASAVIRGTVAYVPQVSWIF 361
++NL + G ++A+VG +G GK+ A+LG LPP + ++ G +
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 362 NATVRDNILFGSAFEPAR--YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI-------- 411
AT+ N +AF P AI+ L + E E V +
Sbjct: 64 IATIMQNPR--TAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEA-VGLPDPEEVLK 120
Query: 412 ------SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTR 463
SGG QRV +A A+ I D+P + LD +V R +R +L G
Sbjct: 121 KYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR-QLFGTGI 179
Query: 464 VLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
+L+T+ L ++++ D + ++ +G + E GT +++ N
Sbjct: 180 LLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 62/244 (25%), Positives = 118/244 (48%), Gaps = 31/244 (12%)
Query: 273 LPNPPLTSG---LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL 329
+P P + P + IRN S+D + + +++L I G + A++G +G GK++L
Sbjct: 5 IPRPQAKTRKALTPLLEIRNLTKSFDGQ---HAVDDVSLTIYKGEIFALLGASGCGKSTL 61
Query: 330 ISAMLGELPPVSDASAVIRGTVAYVPQ----VSWIFNA-------TVRDNILFGSAFEPA 378
+ + G P + + +++VP ++ +F + TV NI FG +
Sbjct: 62 LRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFG--LKQD 119
Query: 379 RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDP 437
+ KA + + L L+ + E +R + +SGGQ+QRV++AR++ + + D+P
Sbjct: 120 KLPKAEIASRVNEMLGLV---HMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEP 176
Query: 438 LSALDA----HVGRQVFDRCIRGELSGKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGT 492
+ ALD + +V D E G T V+VT +Q ++ RI +++ G + G
Sbjct: 177 MGALDKKLRDRMQLEVVDIL---ERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGE 233
Query: 493 FEDL 496
E++
Sbjct: 234 PEEI 237
|
Length = 377 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 54/238 (22%), Positives = 108/238 (45%), Gaps = 29/238 (12%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RK 984
+SF + P + +GIVG +G+GKS++L L + + G A+ L L R+
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81
Query: 985 IL-----GIIPQSP-------VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 1032
L G + Q+P V + L ++ RA +D +
Sbjct: 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RATAQDWLEEVE 136
Query: 1033 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTI 1088
+ ++ + FS G +Q L ++R L+ R +++ +DE T +DV A L++ +
Sbjct: 137 IDPT-RIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 195
Query: 1089 REEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1145
R+ ++I+ H L + R+L++ GRV+E +++L + +++++ S+
Sbjct: 196 RD--LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLLVSS 251
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-07
Identities = 50/204 (24%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE--RGRILIDGFDIAKFGLMDL- 982
L +S + + V + G GAGKS+++ L + G I+ +G ++ + D
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80
Query: 983 RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADL--WEALERAHLKDAIRRNSLGLDAQV 1039
R + II Q L +V N+ +E + + ++A+ +L+ L LD
Sbjct: 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAM---YLRAQKLLAQLKLDINP 137
Query: 1040 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTM 1097
+ N +GQ+QL+ +++AL +++++L+LDE TA++ ++ + I + K+
Sbjct: 138 ATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAHGIAC 196
Query: 1098 LIIAHRLNTIID-CDRILLLDSGR 1120
+ I+H+LN + D I ++ GR
Sbjct: 197 IYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 309 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRD 367
I ++ I+G G GKT+ I + G L P + TV+Y PQ + + TVRD
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD 80
Query: 368 NILFGSAFEPARYEKAIDV-TSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAV 425
+ D T ++ + +I +R V +SGG+ QRV++A +
Sbjct: 81 LL----------SSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACL 130
Query: 426 YSNSDVFIFDDPLSALD 442
++D+++ D+P + LD
Sbjct: 131 SKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 84/312 (26%), Positives = 135/312 (43%), Gaps = 83/312 (26%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LM 980
+L +S + P K+G++G GAGKS TL RI + G D G
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKS----TLLRI---------MAGVDKEFNGEARPA 65
Query: 981 DLRKILGIIPQSPVL-FSGTVRFN-----------LDPFSEHS------DADLWEAL--E 1020
K+ G +PQ P L + TVR N LD F+E S DAD+ +AL E
Sbjct: 66 PGIKV-GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADM-DALLAE 123
Query: 1021 RAHLKDAIR-RNSLGLDAQVSEAGE------------NFSVGQRQLLSLSRALLRRSKIL 1067
+A L++ I ++ LD ++ A + S G+R+ ++L R LL + +L
Sbjct: 124 QAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDML 183
Query: 1068 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR---------ILLLDS 1118
+LDE T +D + A +++ ++ E+ T++ + H DR IL LD
Sbjct: 184 LLDEPTNHLDAESVAWLEQHLQ-EYPG-TVVAVTH--------DRYFLDNVAGWILELDR 233
Query: 1119 GRVLEY--------DTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLR--- 1167
GR + + + E+ L E S Q +++RS +A++K R
Sbjct: 234 GRGIPWEGNYSSWLEQKEKRLEQEEKEESAR-QKALKRELEWVRSSPKARQAKSKARLAR 292
Query: 1168 -EENKQIDGQRR 1178
EE + Q+R
Sbjct: 293 YEELLSQEFQKR 304
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-07
Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 42/236 (17%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER---GRILIDGFDIAKFGLM 980
VL+ +S IP V ++G +G+GK+ TL RI+ LE G I G D+++
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKT----TLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72
Query: 981 DLRKILGIIPQSPVLF-----SGTVRFNLD--PFSEHSDAD--------LWEALERAHLK 1025
D RK+ G + Q LF + F L P E +A L E ++ AHL
Sbjct: 73 D-RKV-GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1085
D AQ+S GQ+Q ++L+RAL +IL+LDE A+D + ++
Sbjct: 131 DR-------YPAQLSG-------GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELR 176
Query: 1086 KTIR---EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
+ +R EE K ++ + + + DR++++ G + + TP+++ + F
Sbjct: 177 RWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232
|
Length = 353 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 19/162 (11%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKFGLMD 981
+L ++FTI + V ++G +G GKS++L+ + + + G + ++ + L
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM--LPA 74
Query: 982 LRKILGIIPQSPVLFS-----GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 1036
++ +GI+ Q +LF + F L L R A+ R GLD
Sbjct: 75 AQRQIGILFQDALLFPHLSVGQNLLFALPA-------TLKGNARRNAANAALER--SGLD 125
Query: 1037 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1078
+ S GQR ++L RALL + K L+LDE + +DV
Sbjct: 126 GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 40/167 (23%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPV--SDASAVIRGTVAYVPQVSWI 360
N+ LDIP + A +G +G GK++++ L +L P + G Y P V +
Sbjct: 28 NVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87
Query: 361 ---------------FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE-- 403
F ++ DNI +G AR + + D+D L + +
Sbjct: 88 EVRRRIGMVFQKPNPFPKSIYDNIAYG-----AR------INGYKGDMDELVERSLRQAA 136
Query: 404 --------IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442
+ + G+++SGGQ+QR+ +ARA+ +V + D+P SALD
Sbjct: 137 LWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 30/212 (14%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 362
L N++ I G ++AIVG +G GK++L+ +LG L + + G + ++S
Sbjct: 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLH-LLGGLDTPTSGDVIFNGQP--MSKLSSAAK 81
Query: 363 ATVRDNILFGSAFEPARYEKAIDVTSLQH-DLDLLPGGD------------VTEIG---- 405
A +R+ L F + D T+L++ + LL G + +G
Sbjct: 82 AELRNQKL---GFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR 138
Query: 406 --ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS---G 460
R +SGG++QRV++ARA+ +N + + D+P LDA +F + GEL+ G
Sbjct: 139 ANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ--LLGELNRLQG 196
Query: 461 KTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 492
++VT+ L ++ R + + +G + E +
Sbjct: 197 TAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228
|
Length = 233 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 46/208 (22%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVIRGTV------AYV 354
L INLDI + A++G +G GK++ + + + +L P S I G V Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP----SVKIEGEVLLDGQDIYK 74
Query: 355 PQVSWI---------------FNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLL 396
+ F ++ DN+ +G + +K +D SL+
Sbjct: 75 SDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKG----- 129
Query: 397 PGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 452
E+ +R + +SGGQ+QR+ +ARA+ +V + D+P SALD ++ +
Sbjct: 130 -AALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL 188
Query: 453 CIRGELSGK-TRVLVTNQLHFLSQVDRI 479
EL T V+VT H + Q RI
Sbjct: 189 IQ--ELKKDYTIVIVT---HNMQQASRI 211
|
Length = 250 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 5e-07
Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 26/232 (11%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--------- 975
VL G+S D + I+G +G+GKS+ L + + + G I+++G I
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 976 ----KFGLMDLRKILGIIPQSPVLFSG-TVRFN-LDPFSEHSDADLWEALERAHLKDAIR 1029
K L LR L ++ Q L+S TV N ++ + EA ERA
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERA----VKY 135
Query: 1030 RNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD---VRTDALIQ 1085
+G+D + + S GQ+Q +S++RAL ++L+ DE T+A+D V I
Sbjct: 136 LAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIM 195
Query: 1086 KTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGS 1136
+ + EE K TM+++ H + ++ L G++ E PE+L N S
Sbjct: 196 QQLAEEGK--TMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQS 245
|
Length = 257 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 34/167 (20%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVIR--GTVAYVPQVS 358
L +I+L+ + A++G +G GK++ + + + +L P + I G Y P V
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 359 WI---------------FNATVRDNILFG--------SAFEPARYEKAIDVTSLQHDLDL 395
+ F ++ +N+ +G A+ R E+++ +L ++
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK- 140
Query: 396 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442
+ E + +SGGQ+QR+ +ARA+ +V + D+P SALD
Sbjct: 141 ------DRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181
|
Length = 253 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 6e-07
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 27/168 (16%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS------------------AMLGELPP 339
E+ L N+++ IP S+ A++G +G GK++ I ++ GE
Sbjct: 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82
Query: 340 VSDASAV-IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPG 398
D V +R V V Q F ++ DN+ +G A +K +D L
Sbjct: 83 EPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGAN-KKDLDGVVENA---LRSA 138
Query: 399 GDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442
E +R +++SGGQ+QR+ +AR + + +FD+P SALD
Sbjct: 139 ALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALD 186
|
Length = 258 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-07
Identities = 57/212 (26%), Positives = 105/212 (49%), Gaps = 32/212 (15%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---- 981
L G + + P + +VG GAGKS+M+ L I + G IL G ++ G
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 982 ----LRKILGIIPQSPV---LFSG---TVRFNLDPFSE-HSDADLWEALERAHLKDAIRR 1030
+ + L +IPQ + +F G RF + + +++AD + L R +L+ + +
Sbjct: 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEAD--KLLARLNLRFSSDK 137
Query: 1031 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV-DVRTDALIQKTIR 1089
V E S+G++Q++ +++ L SK++++DE T A+ D T++L + IR
Sbjct: 138 -------LVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLF-RVIR 185
Query: 1090 E-EFKSCTMLIIAHRLNTIID-CDRILLLDSG 1119
E + + ++ I+HRL I + CD + + G
Sbjct: 186 ELKSQGRGIVYISHRLKEIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 7e-07
Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 25/234 (10%)
Query: 919 RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF------ 972
+ ++ V + LSF++ + + IVG +G+GKS L R++E G + D
Sbjct: 26 QQKIAAVRN-LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRS 84
Query: 973 ----DIAKFGLMDLRKILG----IIPQSPVLFSGTVRFNLDPFSE----HSDADLWEALE 1020
++++ +R + G +I Q P+ V + +E H A EA+
Sbjct: 85 RQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV 144
Query: 1021 RA-HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 1079
A + D +R +S S G RQ + ++ AL R +L+ DE T A+DV
Sbjct: 145 EAKRMLDQVRIPEA--QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVT 202
Query: 1080 TDALIQKTIREEFKSCTM--LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130
A I + I+ K +M + I H + + + DR+L++ G +E + E++
Sbjct: 203 IQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
Length = 623 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 7e-07
Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 9/203 (4%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--LERGRILIDGFDIAKFGLMDL- 982
L G+ + P + VG+ G GAGKS+++ L + G I G + + D
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 983 RKILGIIPQSPVLFSG-TVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQV 1039
R + II Q L +V N+ +E + K+ +R L D
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 1040 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSCTML 1098
G+ + GQ+QL+ +++AL +++++L+LDE ++++ + ++ IR+ + +
Sbjct: 137 RPVGD-YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACV 195
Query: 1099 IIAHRLNTIID-CDRILLLDSGR 1120
I+H+LN + CD I ++ G+
Sbjct: 196 YISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 8e-07
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 33/205 (16%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS------------------AMLGELPPV 340
E L +INL IP + A++G +G GK++L+ M GE
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74
Query: 341 SDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD 400
+ A +R V V Q F ++ +N+ +G + + +K +D + L G
Sbjct: 75 NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERS----LRGAA 130
Query: 401 V-TEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 455
+ E+ +R +SGGQ+QR+ +AR + DV + D+P SALD ++ + +
Sbjct: 131 LWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE--LM 188
Query: 456 GELSGK-TRVLVTNQLHFLSQVDRI 479
EL T V+VT H + Q RI
Sbjct: 189 EELKKNYTIVIVT---HSMQQARRI 210
|
Length = 249 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 8e-07
Identities = 63/250 (25%), Positives = 110/250 (44%), Gaps = 34/250 (13%)
Query: 292 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS----------LISAMLGELPPVS 341
F D KA L NIN+ I S+ A++G +G GK++ L+ + E +
Sbjct: 16 FYTDFKA----LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIY 71
Query: 342 DASAV---------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 392
+ + +R + V Q F ++ DNI +G + +K +D Q
Sbjct: 72 EGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSL 131
Query: 393 LDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 451
+V + + +++SGGQ+QR+ +AR + +V + D+P SALD ++ +
Sbjct: 132 KKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEE 191
Query: 452 RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 510
I + S T ++VT+ + ++ DR G ++EE S+ ELF
Sbjct: 192 LIINLKES-YTIIIVTHNMQQAGRISDRTAFFLNGCIEEE------SSTDELF--FNPKN 242
Query: 511 GKMEEYVEEK 520
K EEY+ K
Sbjct: 243 TKTEEYISGK 252
|
Length = 254 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 46/218 (21%), Positives = 104/218 (47%), Gaps = 40/218 (18%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----E 963
++ E++ + Y L + + IP + +G +G GKS++L R+ +L
Sbjct: 11 LRTENLNVYYGSFL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRV 68
Query: 964 RGRILIDGFDIAKFGL--MDLRKILGIIPQSPVLFSGTV-------------RFNLDPFS 1008
G++ G ++ + +++R+ +G++ Q P F ++ + ++D
Sbjct: 69 EGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELV 128
Query: 1009 EHS--DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1066
E S A LW+ +KD ++++ L L S GQ+Q L ++RA+ + ++
Sbjct: 129 ERSLRQAALWD-----EVKDKLKQSGLSL-----------SGGQQQRLCIARAIAVQPEV 172
Query: 1067 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 1104
+++DE +A+D + I++ + E + T++I+ H +
Sbjct: 173 ILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNM 210
|
Length = 264 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 9e-07
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 982
PVL +S ++ + V + G +G+GKS++L +L+ + G+IL+ +DL
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEG----EWVDLV 80
Query: 983 ----RKILGIIPQSPVLFSGTVRF-----NLDPFSEHSDADLWEALERAHLKDAIRRNSL 1033
R++L + + S +R LD +E A E A K A L
Sbjct: 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPR-EVARAKAADLLTRL 139
Query: 1034 GLDAQV-SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1090
L ++ S A FS G++Q ++++R + IL+LDE TA++D A++ + IRE
Sbjct: 140 NLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197
|
Length = 235 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-06
Identities = 33/108 (30%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 412 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQ 469
SGGQ+QR+++ARA+ ++ + D+P SALD V QV D R ++ + G + + +++
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKH-GLSYLFISHD 486
Query: 470 LHFLSQV-DRIILVHEGMVKEEGTFEDLSNN--GELFQKLMENAGKME 514
L + + R+I++ +G + E+G E + N E + L+ A +E
Sbjct: 487 LAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRALLAAAFDIE 534
|
Length = 534 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 54/241 (22%), Positives = 107/241 (44%), Gaps = 49/241 (20%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI----------VEL------ERGRILI 969
LH + I + V ++G +G+GKS++L L + +EL GR+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 970 D--------GFDIAKFGLMDLRKIL-----GIIPQSPVLFSGTVRFNLDPFSEHSDADLW 1016
D G+ +F L++ +L G + +P R F+
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFW-----RTCFSWFTREQKQRAL 134
Query: 1017 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 1076
+AL R +G+ + S GQ+Q ++++RAL++++K+++ DE A++
Sbjct: 135 QALTR-----------VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASL 183
Query: 1077 DVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
D + ++ T+R+ + T+++ H+++ + C+RI+ L G V YD + N
Sbjct: 184 DPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGSSQQFDN 242
Query: 1134 E 1134
E
Sbjct: 243 E 243
|
Length = 262 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 1e-06
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 967
I+ E++ Y +L +S TI P D++G+VGR GAGKS++L + +E + G +
Sbjct: 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 26/219 (11%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR-KILG 987
LSFT+ + I+G G+GKS++ L ++E G +LID + FG R + +
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH-FGDYSYRSQRIR 90
Query: 988 IIPQSPV-----------LFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 1036
+I Q P + +R N D E + + E L + L L
Sbjct: 91 MIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL----------LP 140
Query: 1037 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKS 1094
S + GQ+Q L L+RAL+ R K+++ DEA A++D+ + + + E E +
Sbjct: 141 DHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQG 200
Query: 1095 CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132
+ + + L + D++L++ G V+E + ++L+
Sbjct: 201 ISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 57/237 (24%), Positives = 106/237 (44%), Gaps = 38/237 (16%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYV---- 354
++ L +I + IP S+ I+G +G GK++L+ +L L + D+ + G V Y
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLK-VLNRLIEIYDSKIKVDGKVLYFGKDI 80
Query: 355 ---------PQVSWIFNA-------TVRDNILF---GSAFEPARYEKAIDVTSLQHDLDL 395
+V +F ++ DNI + + R K I L+
Sbjct: 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKV--- 137
Query: 396 LPGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 451
G E+ +R +SGGQ+QR+++ARA+ V + D+P S +D V Q +
Sbjct: 138 ---GLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI-VNSQAIE 193
Query: 452 RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL--SNNGELFQK 505
+ I + V+V++ +++V D + ++ G + E G+ ++ S EL +K
Sbjct: 194 KLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEK 250
|
Length = 257 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 63/278 (22%), Positives = 116/278 (41%), Gaps = 55/278 (19%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 341
+ R+ +S+ E L IN G +VA++G G GK++L G L P S
Sbjct: 2 LETRDLKYSYPDGTE--ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 342 ---------DASAVI--RGTVAYVPQVS--WIFNATVRDNILFGSAFEPARYEKAIDVTS 388
D +++ R TV V Q +F TV +++ FG
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGP--------------- 104
Query: 389 LQHDLDL-LPGGDVTE--------IGERGV------NISGGQKQRVSMARAVYSNSDVFI 433
L+L L +V + +G G ++SGGQK+RV++A + ++ +
Sbjct: 105 ----LNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV 160
Query: 434 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGT 492
D+P S LD Q+ G T ++ T+ + + D++ ++ +G + +EGT
Sbjct: 161 LDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT 220
Query: 493 FEDLSNNGELFQKLMENAGKMEEYVE--EKEDGETVDN 528
+++ ++ E +K ++ +E KED +
Sbjct: 221 PKEVFSDIETIRKANLRLPRVAHLIEILNKEDNLPIKM 258
|
Length = 275 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 54/224 (24%), Positives = 104/224 (46%), Gaps = 36/224 (16%)
Query: 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------ 347
R + +++L + G +V ++G G GKT+ ++G +P DA +I
Sbjct: 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLH 73
Query: 348 ---RGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHD---LDLLPGGD 400
R + Y+PQ + IF +V DN++ A + D+++ Q + +L+
Sbjct: 74 ARARRGIGYLPQEASIFRRLSVYDNLM-------AVLQIRDDLSAEQREDRANELMEEFH 126
Query: 401 VTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGE 457
+ + + G ++SGG+++RV +ARA+ +N + D+P + +D V D R I
Sbjct: 127 IEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDP---ISVIDIKRIIEHL 183
Query: 458 LSGKTRVLVT--NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 499
VL+T N L+ +R +V +G + GT ++ +
Sbjct: 184 RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227
|
Length = 241 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 63/286 (22%), Positives = 123/286 (43%), Gaps = 55/286 (19%)
Query: 313 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAYVPQVSWIF 361
G +V +G G GK++ + + G LPP S + V ++ + Y+P+ + ++
Sbjct: 28 GRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLY 87
Query: 362 -NATVRDNILFGSAF-------EPARYEKAIDVTSL---QHDLDLLPGGDVTEIGERGVN 410
+ VR+ + F + R E+ I++ L QH +IG+
Sbjct: 88 LDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH----------KKIGQ---- 133
Query: 411 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTN 468
+S G +QRV +A+A+ + V I D+P + LD + Q+ + I+ KT +L T
Sbjct: 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPN---QLVEIRNVIKNIGKDKTIILST- 189
Query: 469 QLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDG- 523
H + +V DR+I++++G + + ++LS + +E +++ + E +
Sbjct: 190 --HIMQEVEAICDRVIIINKGKIVADKKLDELSAANKKQVIEVEFEEQIDLQLFETLEEI 247
Query: 524 ----ETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEER 565
T N ND E + K K + ++Q E+
Sbjct: 248 SSVKNTGGNTWKLTFET--PNDTRPEIFKLAQQKGLKLISLQQNEK 291
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 47/208 (22%), Positives = 100/208 (48%), Gaps = 38/208 (18%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGEL-PPVSDASAVI-RGTVAYV 354
++ L +++LD + A++G +G GK++L+ ++ + +L P V+ +++ G Y
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76
Query: 355 PQVSWI---------------FNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLL 396
P+ + F ++ +N+++G + + ++ +D SL+
Sbjct: 77 PRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLK------ 130
Query: 397 PGGDV-TEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 451
G + E+ +R + +SGGQ+QRV +AR + ++ + + D+P SALD ++ +
Sbjct: 131 -GASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI-E 188
Query: 452 RCIRGELSGKTRVLVTNQLHFLSQVDRI 479
+ G T +LVT + Q RI
Sbjct: 189 ETLLGLKDDYTMLLVT---RSMQQASRI 213
|
Length = 252 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 50/205 (24%), Positives = 97/205 (47%), Gaps = 32/205 (15%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVS--DASAVIRGTVAY 353
++ + N+NLD+ G++ A++G +G GKT+ + A+ + +L P + ++ G Y
Sbjct: 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74
Query: 354 VP---------QVSWIFNA-------TVRDNILFGSAFEPARYEKAI-DVTSLQHDLDLL 396
P +V +F +V DN++ G R + +V + L
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVA----ERSLR 130
Query: 397 PGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 452
E+ +R +SGGQ+QR+ +ARA+ ++ + D+P SALD ++ D
Sbjct: 131 GAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIED- 189
Query: 453 CIRGELSGKTR-VLVTNQLHFLSQV 476
+ +L T ++VT+ +H ++V
Sbjct: 190 -LMTDLKKVTTIIIVTHNMHQAARV 213
|
Length = 252 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 39/168 (23%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLI-----------------SAML-GE------LPPV 340
++NL+I S+ A +G +G GK++++ +L GE + PV
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 341 SDASAVIRGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGG 399
+ +R T+ V Q F ++RDN++ G R +K +D + L G
Sbjct: 82 A-----VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKS----LRGA 132
Query: 400 DV-TEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442
++ E+ +R G +SGGQ+QR+ +ARA+ DV + D+P SALD
Sbjct: 133 NLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-06
Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 44/221 (19%)
Query: 932 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 991
TI P KVG+VG+ G GKS++L L + I DG + ++ + +
Sbjct: 23 TINPGQKVGLVGKNGCGKSTLLALL-------KNEISADG---GSYTFPGNWQLAWVNQE 72
Query: 992 SPVLFSGTVRFNLDPFSEHS--DADLWEALER------AHLK---DAI-------RRNSL 1033
+P L + + +D E+ +A L +A ER A + DAI R SL
Sbjct: 73 TPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL 132
Query: 1034 --GL---DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI--QK 1086
GL + Q+ +FS G R L+L++AL+ RS +L+LDE T +D+ DA+I +K
Sbjct: 133 LHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDL--DAVIWLEK 190
Query: 1087 TIREEFKSCTMLIIAHR---LNTIIDCDRILLLDSGRVLEY 1124
++ T+++I+H L+ I+ D+I+ ++ + EY
Sbjct: 191 WLKS--YQGTLILISHDRDFLDPIV--DKIIHIEQQSLFEY 227
|
Length = 638 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-06
Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-RGRILIDGFDIAKFGLMDL----- 982
+SF++ + +G+ G GAG++ ++ LF + G + I+G +
Sbjct: 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGI 338
Query: 983 ------RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 1036
RK GI+P V + T+ L F D A E + AI+R +
Sbjct: 339 AMVPEDRKRHGIVPILGVGKNITLS-VLKSFCFKMRID--AAAELQIIGSAIQRLKVKTA 395
Query: 1037 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSC 1095
+ G S G +Q L++ LL ++L+LDE T VDV I K I + +
Sbjct: 396 SPFLPIG-RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGV 454
Query: 1096 TMLIIAHRLNTIID-CDRILLLDSGRV 1121
+++++ L ++ DR+L++ G++
Sbjct: 455 AIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-06
Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IR 348
ER L + G ++A++G +G GK++L++A+ G + + + I
Sbjct: 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL 139
Query: 349 GTVAYVPQVSWIF-NATVRDNILFGSAFE-P---ARYEKAIDVTSLQHDLDLLPGGDVTE 403
+V Q ++ + TVR+ ++F S P + EK + S+ +L L + T
Sbjct: 140 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN-TI 198
Query: 404 IGE---RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 460
IG RG ISGG+++RVS+A + N + I D+P S LDA ++ G L+
Sbjct: 199 IGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTL--GSLAQ 254
Query: 461 KTRVLVTNQLHFLSQV----DRIILVHEG 485
K + +VT+ S+V D ++++ EG
Sbjct: 255 KGKTIVTSMHQPSSRVYQMFDSVLVLSEG 283
|
Length = 659 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-06
Identities = 58/232 (25%), Positives = 106/232 (45%), Gaps = 32/232 (13%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 362
L NI+ ++P G +V I+G G GK++L + + G P + + I+G+ A + S +
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP-NKGTVDIKGSAALIAISSGLNG 98
Query: 363 A-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI-------SGG 414
T +NI EK ++ ++ E + G I S G
Sbjct: 99 QLTGIENIELKGLMMGLTKEKIKEIIP-----------EIIEFADIGKFIYQPVKTYSSG 147
Query: 415 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 474
K R+ A +V+ N D+ + D+ LS D ++ D+ + GKT ++ H LS
Sbjct: 148 MKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFIS---HSLS 204
Query: 475 QVD----RIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKED 522
QV + + +H G VKE G +++ ++ + + ++ +M VEE++D
Sbjct: 205 QVKSFCTKALWLHYGQVKEYGDIKEVVDH---YDEFLKKYNQMS--VEERKD 251
|
Length = 549 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 2e-06
Identities = 62/199 (31%), Positives = 86/199 (43%), Gaps = 64/199 (32%)
Query: 928 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR-IVELER---GRILIDGFDIAKFGLMDLR 983
LSF++PP VGI+G GAGKS TLF+ I E+ G I I G + K +D
Sbjct: 342 DLSFSLPPGGIVGIIGPNGAGKS----TLFKMITGQEQPDSGTIKI-G-ETVKLAYVD-- 393
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE---------------RAHLKDAI 1028
QS R LDP + +WE + RA++
Sbjct: 394 -------QS--------RDALDP-----NKTVWEEISGGLDIIKVGNREIPSRAYVG--- 430
Query: 1029 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-----DAL 1083
R N G D Q + G S G+R L L++ L + +L+LDE T +DV T +AL
Sbjct: 431 RFNFKGGDQQ-KKVG-VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEAL 488
Query: 1084 IQKTIREEFKSCTMLIIAH 1102
EF C + +I+H
Sbjct: 489 ------LEFPGCAV-VISH 500
|
Length = 556 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 30/224 (13%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988
LS + + + +VG GAGKS++L + ++ G I G + + +L +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS-GSIQFAGQPLEAWSAAELARHRAY 73
Query: 989 IPQ--SPVLFSGTVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043
+ Q +P F + F + H + L + LGLD ++ +
Sbjct: 74 LSQQQTPP-------FAMPVFQYLTLHQPDKTRTEAVASALNEVAEA--LGLDDKLGRSV 124
Query: 1044 ENFSVGQRQLLSLSRALLR-------RSKILVLDEATAAVDVRTDALIQKTIREEFKSC- 1095
S G+ Q + L+ +L+ ++L+LDE ++DV A + + + E C
Sbjct: 125 NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE---LCQ 181
Query: 1096 ---TMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
+++ +H LN T+ DR+ LL G++L +E+L+ E
Sbjct: 182 QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN 225
|
Length = 248 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 3e-06
Identities = 70/277 (25%), Positives = 120/277 (43%), Gaps = 38/277 (13%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS---LISAMLGELPPV- 340
+ + N F ++ +++ L ++ I G V+I+G G GK++ LI + E
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 341 --------SDASAVIRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 390
++ +R + V Q + ATV D++ FG + E+ I +
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIK----R 120
Query: 391 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 450
D LL + +SGGQKQRV++A + ++ I D+ S LD GRQ
Sbjct: 121 VDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP-TGRQEI 179
Query: 451 DRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEE-------GTFEDLSNNG 500
R I E+ K ++ V + H L + DRI+++ G + +E T ED+ G
Sbjct: 180 MRVIH-EIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVEIG 238
Query: 501 -------ELFQKLMENAGKM-EEYVEEKEDGETVDNK 529
L + L +N + E+Y+ E E E + +K
Sbjct: 239 LDVPFSSNLMKDLRKNGFDLPEKYLSEDELVELLADK 275
|
Length = 277 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 3e-06
Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 306 INLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASA-----------------V 346
+N DI + AI+G +G GK++ + A+ + +L P + +
Sbjct: 58 VNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVL 117
Query: 347 IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 406
+R + V Q F ++ DNI +G +K ++ + L E+ +
Sbjct: 118 LRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEK---SLRKAALWDEVSD 174
Query: 407 R----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK- 461
R + +SGGQ+QR+ +AR + ++ + D+P SALD ++ D + EL G
Sbjct: 175 RLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIED--LIQELRGSY 232
Query: 462 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
T ++VT+ + S+V D + +EG++ E L N
Sbjct: 233 TIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 3e-06
Identities = 57/213 (26%), Positives = 108/213 (50%), Gaps = 22/213 (10%)
Query: 932 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---FDIAK--FGLMDLRKIL 986
T+P I GR+GAGK+S++N + + ++GRI+++G FD K + R+I
Sbjct: 20 TLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRI- 78
Query: 987 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1045
G + Q LF VR NL S ++ + LG++ + +
Sbjct: 79 GYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVAL----------LGIEPLLDRYPGS 128
Query: 1046 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ--KTIREEFKSCTMLIIAH 1102
S G++Q +++ RALL ++L++DE A++D+ R L+ + + E +L ++H
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREIN-IPILYVSH 187
Query: 1103 RLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
L+ I+ DR+++L+ G+V + EE+ ++
Sbjct: 188 SLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220
|
Length = 352 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 26/231 (11%)
Query: 913 DVVLR------YRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LE 963
+V+L + P P + +SF++ + +GI G GAG++ ++ LF
Sbjct: 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW 316
Query: 964 RGRILIDGFDIA--------KFGLMDL---RKILGIIPQSPVLFSGTVRFNLDPFSEHSD 1012
G I IDG + G+ + RK GI+P V + T+ LD F+ S
Sbjct: 317 EGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLA-ALDRFTGGSR 375
Query: 1013 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 1072
D +A E + ++I+R + A A S G +Q L++ LL KIL+LDE
Sbjct: 376 ID--DAAELKTILESIQRLKVKT-ASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEP 432
Query: 1073 TAAVDVRTDALIQKTIREEFKSCTMLI-IAHRLNTIID-CDRILLLDSGRV 1121
T +DV I K I + + +I I+ L ++ DR+L++ G++
Sbjct: 433 TRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 52/217 (23%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL-FRIVELER--GRILIDGFDIAKFGLM 980
P+L S + P + V ++GR G+G S++L L R G I +G +F
Sbjct: 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAE- 79
Query: 981 DLRKILGIIPQSPVLFSG---------TVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 1031
+++ TVR LD F+
Sbjct: 80 --------KYPGEIIYVSEEDVHFPTLTVRETLD-FA----------------------- 107
Query: 1032 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE- 1090
L + +E S G+R+ +S++ AL+ R+ +L D +T +D T I K IR
Sbjct: 108 ---LRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 1091 --EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEY 1124
K+ T + + + I D D++L+L GR + Y
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY 201
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 51/244 (20%)
Query: 284 AISIRNGYFSWDSKAERPTLLN-INLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELP--- 338
+S + K + T+LN ++L + G VA++G +G GK++L ++G E P
Sbjct: 8 GLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG 67
Query: 339 -------PVS----DASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVT 387
P++ R + V Q D+I SA P + + I
Sbjct: 68 NVSWRGEPLAKLNRAQRKAFRRDIQMVFQ----------DSI---SAVNPRKTVREIIRE 114
Query: 388 SLQHDLDLLPGGDVTEIGE--------------RGVNISGGQKQRVSMARAVYSNSDVFI 433
L+H L L + E R +SGGQ QRV +ARA+ + I
Sbjct: 115 PLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLI 174
Query: 434 FDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQVD----RIILVHEGMVK 488
D+ +S LD + V + + G + +T H L V+ R++++ G +
Sbjct: 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFIT---HDLRLVERFCQRVMVMDNGQIV 231
Query: 489 EEGT 492
E
Sbjct: 232 ETQP 235
|
Length = 268 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-06
Identities = 56/230 (24%), Positives = 108/230 (46%), Gaps = 35/230 (15%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 987
+SF++ + +G G G+G++ ++N LF + + G I ++G DI+ +D ++K +
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341
Query: 988 IIPQS-------------------PVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 1028
I +S L G + + F E + E +R L A+
Sbjct: 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAEN-QRELL--AL 398
Query: 1029 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1088
+ +S+ + ++E S G +Q + +S+ L ++++ DE T +DV A I K +
Sbjct: 399 KCHSV--NQNITE----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVM 452
Query: 1089 R---EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
R ++ K +L+++ L II CDRI + GR+ + T + +S E
Sbjct: 453 RQLADDGK--VILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMSEE 500
|
Length = 510 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-06
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 23/208 (11%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRK 984
L +SF ++G GAGKS++L L + + G ILIDG ++ L
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 985 ILGIIPQ----SPVLFSGTVRFNLD----PFSEHSDADLWEALERAHLKDAIRRNSLGLD 1036
+ II Q P + TV NL P H + L ++ + LG+D
Sbjct: 80 GVAIIYQELHLVPEM---TVAENLYLGQLP---HKGGIVNRRLLNYEAREQLEH--LGVD 131
Query: 1037 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDAL--IQKTIREEFK 1093
+ S+GQRQ++ +++AL R ++++ DE T+++ R + L + + +R E +
Sbjct: 132 IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGR 191
Query: 1094 SCTMLIIAHRLNTIID-CDRILLLDSGR 1120
+L ++HR+ I CD I + GR
Sbjct: 192 --VILYVSHRMEEIFALCDAITVFKDGR 217
|
Length = 501 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 27/235 (11%)
Query: 923 PPVLHGLSFTIPPSDKVGIVGRTGAGKS----SMLNTLFRIVELERGRILIDGFDIAKFG 978
P++HG+S T+ + +VG +G+GKS + L L V GR+L+DG +A
Sbjct: 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA 75
Query: 979 LMDLRKILGII--PQS---PVLFSGT-VRFNLDPFSEHS-DADLWEALERAHLKDAIRRN 1031
L RKI I+ P+S P+ T R + + DA L ALE L++A R
Sbjct: 76 LRG-RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARV- 133
Query: 1032 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKT 1087
L E S G Q + ++ ALL + ++ DE T +DV A L++
Sbjct: 134 ---LKLYPFE----MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESI 186
Query: 1088 IREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1141
+++ ++ ML++ H + + D + ++ GR++E E L + + ++
Sbjct: 187 VQK--RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRS 239
|
Length = 254 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 23/129 (17%)
Query: 378 ARYEKAIDVTSL------QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 431
R ++AID+ + LD+ P +SGG QRV +A A+ +
Sbjct: 126 TRRQRAIDLLNQVGIPDPASRLDVYPH-----------QLSGGMSQRVMIAMAIACRPKL 174
Query: 432 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTR---VLVTNQLHFLSQV-DRIILVHEGMV 487
I D+P +ALD + Q+ + + EL K VL+T+ L +++ +II+++ G V
Sbjct: 175 LIADEPTTALDVTIQAQIIELLL--ELQQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232
Query: 488 KEEGTFEDL 496
E G D+
Sbjct: 233 VETGKAHDI 241
|
Length = 326 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 55/219 (25%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
VL+ L IP V +VGR+G GKS TL R L+ G + G
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKS----TLLR---------LLAGLETPSAG------ 67
Query: 985 ILGIIPQSPVLFSGTVRFNLDPFSE--------HSDADL--WEAL-------ERAHLKDA 1027
L +GT P +E DA L W+ + + +DA
Sbjct: 68 ---------ELLAGTA-----PLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDA 113
Query: 1028 IRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1085
+ ++GL + +E S GQ+Q ++L+RAL+ R +L+LDE A+D T +Q
Sbjct: 114 ALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQ 173
Query: 1086 KTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRV 1121
I ++ T+L++ H ++ + DR+LL++ G++
Sbjct: 174 DLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 5e-06
Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 43/224 (19%)
Query: 921 ELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG----FDI 974
P V L ++ + P ++G GAGKS++L LF I + + G IL G F
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 975 AKFGLMD----LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK----- 1025
+K L + + + L ++ Q V+ ++W L R K
Sbjct: 67 SKEALENGISMVHQELNLVLQRSVM-----------------DNMW--LGRYPTKGMFVD 107
Query: 1026 -DAIRRNS------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1078
D + R++ L +D SV Q Q++ +++A +KI+++DE T+++
Sbjct: 108 QDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTE 167
Query: 1079 RTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGR 1120
+ + IR+ + + C ++ I+H++ I CD I +L G+
Sbjct: 168 KEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 7e-06
Identities = 46/235 (19%), Positives = 89/235 (37%), Gaps = 38/235 (16%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 341
A+ + F + R L +++ + G VA++G G GK++L S +
Sbjct: 1 ALEVAGLSFRY---GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 342 ----------DASAVIRGTVAYVPQVSWIFNATVRDNILF-------GSAFEPARYEKAI 384
A + Q + + +VR N+ + A AR + +
Sbjct: 58 ISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELL 117
Query: 385 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 444
L D ++ ++GG ++RV +ARA+ + + D+P LD
Sbjct: 118 ARLGLAERAD-----------DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPA 166
Query: 445 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDL 496
R +R L+ + V H + ++ DR++++H G V +G +L
Sbjct: 167 -SRAAITAHVR-ALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 65/224 (29%), Positives = 102/224 (45%), Gaps = 39/224 (17%)
Query: 282 LPAISIRNGYFSWD-SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELP 338
+PAI +++ F ++ SKA + I++DI + AI+G +G GK++ I + + EL
Sbjct: 5 IPAIKVKDLSFYYNTSKA----IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE 60
Query: 339 -PVSDASAV-IRGTVAYVP---------QVSWIFNATVRDNILFGSAFEPARYEKAIDVT 387
PV V G Y P Q+ +F R N S +E Y I
Sbjct: 61 GPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQ---RPNPFPMSIYENVAYGVRISAK 117
Query: 388 SLQHDLD-----LLPGGDV-----TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 437
Q DLD L G + ++ + + +SGGQ+QR+ +ARA+ V + D+P
Sbjct: 118 LPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEP 177
Query: 438 LSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRI 479
SALD +V + +R EL T +VT H + Q R+
Sbjct: 178 CSALDPIATMKVEELIHSLRSEL---TIAIVT---HNMQQATRV 215
|
Length = 259 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 7e-06
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 412 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 449
SGGQ+QR+++ARA+ + DV + D+P+SALD V QV
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQV 193
|
Length = 327 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 7e-06
Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 27/174 (15%)
Query: 927 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 986
GLSFT+ + V I G GAGK+S+L L + + G +L G I + + +L
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77
Query: 987 ------GIIPQSPVLFSGT----VRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 1036
GI L T +RF D LWEAL + L D
Sbjct: 78 YLGHQPGI---KTEL---TALENLRFYQRLHGPGDDEALWEALAQVGLA---GF----ED 124
Query: 1037 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1090
V S GQ++ ++L+R L R+ + +LDE A+D + A ++ + +
Sbjct: 125 VPVR----QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQ 174
|
Length = 204 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 8e-06
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 60/221 (27%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD--ASAVIRGTVA------YV 354
L +++DIP S+ A++G +G GK S L L ++D +A I G+V Y
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGK----STFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116
Query: 355 PQVSWI---------------FNATVRDNI-----------------LFGSAFEPAR--- 379
V+ + F ++R+NI L G + A
Sbjct: 117 DGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDEL 176
Query: 380 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 439
E+++ +L +++ + + + +SGGQ+QR+ +AR + + +V + D+P S
Sbjct: 177 VERSLRQAALWDEVN-------DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPAS 229
Query: 440 ALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQVDRI 479
ALD ++ D + EL+ + T V+VT H + Q RI
Sbjct: 230 ALDPIATSKIED--LIEELAEEYTVVVVT---HNMQQAARI 265
|
Length = 305 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 8e-06
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 39/228 (17%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM------------LGELPPVSDASA 345
A + L +++ P ++ +++G TG GKT+ + + G++ +
Sbjct: 32 AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91
Query: 346 VIRGTVAYVPQVSWIFN------ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGG 399
R + + +V +F ++ DN+L G R K + + + +
Sbjct: 92 NYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAG-----VRAHKLVP----RKEFRGVAQA 142
Query: 400 DVTEIG----------ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 449
+TE+G + +SGGQ+Q + +AR + N +V + D+P SALD ++
Sbjct: 143 RLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKI 202
Query: 450 FDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 496
+ IR T ++VT+ L +++ DR L +G + EEG E L
Sbjct: 203 -EEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249
|
Length = 276 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 8e-06
Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 48/192 (25%)
Query: 307 NLDIPV-GSLVAIVGGTGEGKTSLISAMLGELPP-------VSDASAVI---RGT----- 350
L P G +V I+G G GK++ + + GEL P VI RGT
Sbjct: 93 RLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNY 152
Query: 351 --------------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 396
YV + + V + L E ++++ ++ L++ LD
Sbjct: 153 FKKLYEGELRAVHKPQYVDLIPKVVKGKVGE--LLKKVDERGKFDEVVERLGLENVLD-- 208
Query: 397 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCI 454
++ E +SGG+ QRV++A A+ ++DV+ FD+P S LD RQ + R I
Sbjct: 209 -----RDVSE----LSGGELQRVAIAAALLRDADVYFFDEPSSYLDI---RQRLNAARVI 256
Query: 455 RGELSGKTRVLV 466
R V+V
Sbjct: 257 RELAEDGKYVIV 268
|
Length = 591 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 8e-06
Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 32/218 (14%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 364
NI+L +P S+ ++G G GK++L+ + G L P S + G W T
Sbjct: 18 NISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS-GEIIFDGH-------PW----T 65
Query: 365 VRDNILFGSAFE-PARYEK--AID----VTSLQH-----DLDLLPGGDVTEIGERGV-NI 411
+D GS E P YE A + T+L ++L D+T G++
Sbjct: 66 RKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQF 125
Query: 412 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 471
S G KQR+ +A A+ ++ + I D+P + LD +G Q IR V++++ H
Sbjct: 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDP-IGIQELRELIRSFPEQGITVILSS--H 182
Query: 472 FLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQK 505
LS+V D I ++ EG++ +G N +LF +
Sbjct: 183 ILSEVQQLADHIGIISEGVLGYQGKINKSENLEKLFVE 220
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 9e-06
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 40/191 (20%)
Query: 285 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 343
I++ N ++ + LL N++L + G + +VG G GK++L+ + GEL P D+
Sbjct: 4 ITLENLSLAYGDR----PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DS 57
Query: 344 SAVIRG---TVAYVPQVSWIF-NATVRDNILFGSAFEP-----ARYEKAID--------- 385
V R V Y+ Q + TV D ++ F A E+A
Sbjct: 58 GEVTRPKGLRVGYLSQEPPLDPEKTVLDYVI--EGFGELRELLAELEEAYALLADPDDEL 115
Query: 386 VTSLQHDLDLLPGGDV-TEIGE--RGVNI----------SGGQKQRVSMARAVYSNSDVF 432
+ L+ L+ L G + E G+ SGG ++RV++ARA+ D+
Sbjct: 116 LAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLL 175
Query: 433 IFDDPLSALDA 443
+ D+P + LD
Sbjct: 176 LLDEPTNHLDL 186
|
Length = 530 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-06
Identities = 58/262 (22%), Positives = 115/262 (43%), Gaps = 44/262 (16%)
Query: 909 IKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSM---LNTLF----- 957
IK +++V + +LP L +S I + + I+G+TG+GK++ LN L
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 958 ---------------RIVELERGRILIDGFDIAKF-GLMDLRKILGIIPQ--SPVLFSGT 999
+ E +++I K + ++R+ +G++ Q LF T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 1000 VRFNL--DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSL 1056
+ ++ P S + EA +RA I +GLD + S GQ++ ++L
Sbjct: 123 IEKDIIFGPVSMGVSKE--EAKKRA--AKYIEL--VGLDESYLQRSPFELSGGQKRRVAL 176
Query: 1057 SRALLRRSKILVLDEATAAVD---VRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDR 1112
+ L LV DE TA +D V+ I + ++ K T++++ H L+ +++ R
Sbjct: 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK--TIILVTHDLDNVLEWTKR 234
Query: 1113 ILLLDSGRVLEYDTPEELLSNE 1134
+ G++++ ++LS+
Sbjct: 235 TIFFKDGKIIKDGDTYDILSDN 256
|
Length = 305 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 35/206 (16%)
Query: 316 VAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYVPQ-------------- 356
+AI+G G GK++L + G + P S D + G +Y Q
Sbjct: 42 LAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLN 101
Query: 357 ----VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 412
+S I + +R N + EP + EK I T Q + LLP ++
Sbjct: 102 PRQRISQILDFPLRLN----TDLEPEQREKQIIETLRQ--VGLLP----DHASYYPHMLA 151
Query: 413 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQLH 471
GQKQR+ +ARA+ V I D+ L++LD + Q+ + + E G + + VT L
Sbjct: 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG 211
Query: 472 FLSQV-DRIILVHEGMVKEEGTFEDL 496
+ + D+++++H+G V E G+ D+
Sbjct: 212 MMKHISDQVLVMHQGEVVERGSTADV 237
|
Length = 267 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 1e-05
Identities = 65/272 (23%), Positives = 116/272 (42%), Gaps = 52/272 (19%)
Query: 269 EKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS 328
E + P G P + +RN S K +++ + G ++ I G G G+T
Sbjct: 248 EDLFPEPPEEGIGEPVLEVRN--LSGGGKVR-----DVSFTVRAGEILGIAGLVGAGRTE 300
Query: 329 LISAMLGELPPVSDASAVIRGT--------------VAYVP---QVSWIF-NATVRDNIL 370
L A+ G P S ++ G +AYVP + + + ++ +NI
Sbjct: 301 LARALFG-ARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENIT 359
Query: 371 FGS-------AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 423
S R E+A+ L + IG +SGG +Q+V +AR
Sbjct: 360 LASLRRFSRRGLIDRRKERAL-AERYIRRLRIKTPSPEQPIG----TLSGGNQQKVVLAR 414
Query: 424 AVYSNSDVFIFDDPLSALDAHVG--RQVFDRCIRGELS--GKTRVLVTNQLHFLSQV-DR 478
+ ++ V I D+P +D VG +++ R IR EL+ GK ++++++L L + DR
Sbjct: 415 WLATDPKVLILDEPTRGID--VGAKAEIY-RLIR-ELAAEGKAILMISSELPELLGLSDR 470
Query: 479 IILVHEGMVKEEGTFEDLSNNGELFQKLMENA 510
I+++ EG + E E+ + + +M A
Sbjct: 471 ILVMREGRIVGELDREEAT-----EEAIMAAA 497
|
Length = 500 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-05
Identities = 51/255 (20%), Positives = 98/255 (38%), Gaps = 43/255 (16%)
Query: 273 LPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 332
+ PP T G + + + S + + +++ ++ G +V I G G G++ L+ A
Sbjct: 246 VVKPPSTPGEVVLEVED--LSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEA 303
Query: 333 MLGELPPVS--------------DASAVIRGTVAYVP----QVSWIFNATVRDNILFGSA 374
+ G P S R +AYVP + + ++ +N++ G
Sbjct: 304 ISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRH 363
Query: 375 FEPARYEKAI--------DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 426
+ L + D+ ++SGG +Q++ +AR +
Sbjct: 364 DKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELA 419
Query: 427 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-----SGKTRVLVTNQLHFLSQV-DRII 480
D+ I P LD VG F I L +GK +L++ L + ++ DRI
Sbjct: 420 RRPDLLIAAQPTRGLD--VGAIEF---IHERLLELRDAGKAVLLISEDLDEILELSDRIA 474
Query: 481 LVHEGMVKEEGTFED 495
+++EG + E+
Sbjct: 475 VIYEGRIVGIVPPEE 489
|
Length = 501 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 412 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQ 469
SGGQ+QRV +A A+ + D+ I D+P +ALD V Q+ D + ++ EL G + +T+
Sbjct: 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHD 217
Query: 470 LHFLSQV-DRIILVHEGMVKEEGTFEDL 496
L + + DR+ ++ G + E GT E L
Sbjct: 218 LGIVRKFADRVYVMQHGEIVETGTTETL 245
|
Length = 534 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 33/215 (15%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
P L ++ T+ + + ++G +G GK+++LN + V + G I +DG + G R
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE--R 72
Query: 984 KIL----GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 1039
++ G++P V V F L + + + + LE AH +++ L
Sbjct: 73 GVVFQNEGLLPWRNVQ--DNVAFGL----QLAGVEKMQRLEIAH--QMLKKVGL------ 118
Query: 1040 SEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT----DALIQKTIREE 1091
A + + S GQRQ + ++RAL ++L+LDE A+D T L+ K +E
Sbjct: 119 EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET 178
Query: 1092 FKSCTMLIIAHRLNTIIDCDRILLLDS---GRVLE 1123
K +L+I H + + L+L S GRV+E
Sbjct: 179 GKQ--VLLITHDIEEAVFMATELVLLSPGPGRVVE 211
|
Length = 255 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 47/187 (25%), Positives = 68/187 (36%), Gaps = 54/187 (28%)
Query: 309 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDN 368
+ G ++ IVG G GKT+ + + G+L P D T Y PQ
Sbjct: 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQ------------ 68
Query: 369 ILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 428
ID L GG++ QRV++A A+ N
Sbjct: 69 --------------YID----------LSGGEL---------------QRVAIAAALLRN 89
Query: 429 SDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRVLVTNQLHFLSQVDRIILVHEGM 486
+ ++FD+P + LD R R IR E KT ++V + L L + I V EG
Sbjct: 90 ATFYLFDEPSAYLDIE-QRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGE 148
Query: 487 VKEEGTF 493
G
Sbjct: 149 PGVYGIA 155
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 33/227 (14%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS---------AMLGELPPVSDASA--- 345
++ L +IN+ I + A++G +G GK++ + A + L +
Sbjct: 13 GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ 72
Query: 346 ---VIRGTVAYVPQVSWIFNATVRDNILFGSAF---------EPARYEKAIDVTSLQHDL 393
+R V V Q +F ++ +NI + E A + L ++
Sbjct: 73 DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV 132
Query: 394 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 453
++ + + +SGGQ+QR+ +ARA+ + + D+P SALD + V +
Sbjct: 133 K-------DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEEL 184
Query: 454 IRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
++ + ++VT+ + +V D H G + E G ++ N
Sbjct: 185 LKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231
|
Length = 246 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 51/259 (19%), Positives = 111/259 (42%), Gaps = 22/259 (8%)
Query: 888 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 947
+ + + ++ R R L L +S P + + ++G +GA
Sbjct: 6 RNSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKHL---LKNVSGVAKPGELLAVMGSSGA 62
Query: 948 GKSSMLNTL-FRIVE-LER-GRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFN 1003
GK++++N L FR + ++ G +L++G ++R I + Q + + TVR +
Sbjct: 63 GKTTLMNALAFRSPKGVKGSGSVLLNG---MPIDAKEMRAISAYVQQDDLFIPTLTVREH 119
Query: 1004 LDPFSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAG-----ENFSVGQRQLLSL 1056
L F H + + +R + + ++ L + G + S G+R+ L+
Sbjct: 120 LM-FQAHLRMPRRVTKKEKRERVDEVLQALGL-RKCANTRIGVPGRVKGLSGGERKRLAF 177
Query: 1057 SRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIIDC--DRI 1113
+ LL +L DE T+ +D + + ++ K T++ H+ ++ + D+I
Sbjct: 178 ASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKI 237
Query: 1114 LLLDSGRVLEYDTPEELLS 1132
+L+ GRV +P++ +
Sbjct: 238 ILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 27/162 (16%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASA----------------- 345
++++D P S+ AI+G +G GK++++ ++ + +L P + +
Sbjct: 22 DVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81
Query: 346 VIRGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
IR V V Q F A ++ DN++ G R ++ ++ L + D E+
Sbjct: 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN-GRVNRSEADEIVESSLKRVALWD--EV 138
Query: 405 GER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442
+R + +SGGQ+QR+ +AR + +V + D+P SALD
Sbjct: 139 KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
Query: 296 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGT 350
+ R ++ + G + + G G GKT+L+ + G PP++ + +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 351 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 410
+ + ++ +A L S E R+ A + L + +R V
Sbjct: 69 DSIARGLLYLGHAPGIKTTL--SVLENLRFWHADHSDE--QVEEALARVGLNGFEDRPVA 124
Query: 411 -ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 443
+S GQ++RV++AR + S ++I D+P +ALD
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 46/227 (20%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-------------- 350
+++L + G L I+G G GKT+++ + G+ P + S + GT
Sbjct: 20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP-DEGSVLFGGTDLTGLPEHQIARAG 78
Query: 351 VAYVPQVSWIF-NATVRDNI---------LFGSAF------EPARYEKAIDVTSLQHDLD 394
+ Q +F N TV +N+ +F S F E R E+ ++ L + D
Sbjct: 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEAD 138
Query: 395 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 454
L G +S GQKQ + + + + + + D+P++ + + +
Sbjct: 139 RLAG-----------LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLK 187
Query: 455 RGELSGKTRVLVTNQ-LHFLSQVDRIILV-HEGMVKEEGTFEDLSNN 499
L+GK V+V + F+ + + V H+G V EG+ + + +
Sbjct: 188 S--LAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQAD 232
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 41/189 (21%)
Query: 283 PAISIRN-GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAM----- 333
A+ +RN F D +A L +I++ IP + A +G +G GK++L + M
Sbjct: 24 TALEVRNLNLFYGDKQA----LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVD 79
Query: 334 ----LGEL----PPVSDAS---AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEK 382
GE+ + D A +R V V Q F ++ +N+++G + +
Sbjct: 80 NCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRR 139
Query: 383 AIDVT--------SLQHDL-DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 433
+D +L ++ D L E +SGGQ+QR+ +ARA+ +V +
Sbjct: 140 VLDEAVERSLRGAALWDEVKDRL--------HENAFGLSGGQQQRLVIARAIAIEPEVLL 191
Query: 434 FDDPLSALD 442
D+P SALD
Sbjct: 192 LDEPTSALD 200
|
Length = 272 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 346 VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 405
V+R + V Q F+ ++ DN+ FG RY K ++H L D E+
Sbjct: 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLN--RY-KGDLGDRVKHALQGAALWD--EVK 140
Query: 406 ER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 449
++ G+++SGGQ+QR+ +ARA+ + +V + D+P SALD R+V
Sbjct: 141 DKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRV 188
|
Length = 261 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 53/260 (20%), Positives = 101/260 (38%), Gaps = 48/260 (18%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT--------VAYV 354
L ++NL + G + A++G G GK++L+ + G P + I +A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTK-GTITINNINYNKLDHKLAAQ 79
Query: 355 PQVSWIFNA-------TVRDNILFGS--------------AFEPARYEKAIDVTSLQHDL 393
+ I+ TV +N+ G R + L+ DL
Sbjct: 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL 139
Query: 394 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD-- 451
D N+S KQ + +A+ + ++ V I D+P S+L +F
Sbjct: 140 DEKVA-----------NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIM 188
Query: 452 RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 510
+R E G V ++++L + ++ DR ++ +G G D+SN+ + +LM
Sbjct: 189 NQLRKE--GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIV--RLMVGR 244
Query: 511 GKMEEYVEEKEDGETVDNKT 530
+ KE+ + ++T
Sbjct: 245 ELQNRFNAMKENVSNLAHET 264
|
Length = 510 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 38/181 (20%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLMD 981
VLH +SF+I + + IVG +G+GKS++L+ L + G ++ +G ++K +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 982 LR-KILGIIPQ---------------SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK 1025
LR + LG I Q P+L E RA
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPA--------------EINSRALEM 129
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALI 1084
A ++GL+ + + S G+RQ ++++RAL+ ++++ DE T +D R D++
Sbjct: 130 LA----AVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIF 185
Query: 1085 Q 1085
Q
Sbjct: 186 Q 186
|
Length = 233 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 47/206 (22%), Positives = 91/206 (44%), Gaps = 40/206 (19%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM------------LGELPPVSDASAV---- 346
L NIN+ + + A++G +G GK++ + GE+ D +
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 347 -----IRGTVAYVPQVSWIFNATVRDNILFG--------SAFEPARYEKAIDVTSLQHDL 393
+R ++ V Q F ++ +N+ +G + R E A+ +L ++
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV 151
Query: 394 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 453
+G+ N+SGGQ+QR+ +ARA+ ++ ++ +FD+P SALD + +
Sbjct: 152 K-------DRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDP-IATASIEEL 203
Query: 454 IRGELSGKTRVLVTNQLHFLSQVDRI 479
I +L K +L+ H + Q R+
Sbjct: 204 I-SDLKNKVTILIVT--HNMQQAARV 226
|
Length = 265 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 51/204 (25%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF--RIVELERGRILIDGFDIAKFGLMDLR 983
L+ +S + P ++G +GAGK+++L+ L + + G ILI+G + K + +
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK----NFQ 78
Query: 984 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEA 1042
+ G + Q V TVR EAL +R GL
Sbjct: 79 RSTGYVEQQDVHSPNLTVR---------------EALR---FSALLR----GL------- 109
Query: 1043 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-----CTM 1097
SV QR+ L++ L + IL LDE T+ +D + I + +++ S CT+
Sbjct: 110 ----SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTI 165
Query: 1098 LIIAHRLNTII--DCDRILLLDSG 1119
H+ + I DR+LLL G
Sbjct: 166 ----HQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 54/223 (24%), Positives = 101/223 (45%), Gaps = 43/223 (19%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID----GFDIAKFGLMDL-- 982
+SF + P + +GIVG +G+GK+++L + GR+ D + + DL
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCI-------SGRLTPDAGTVTYRMRDGQPRDLYT 77
Query: 983 -----RKIL-----GIIPQSP-------VLFSGTVRFNLDPFSEHSDADLWEALERAHLK 1025
R+ L G + Q+P V G + L ++ RA +
Sbjct: 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNI-----RAEAQ 132
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA--- 1082
D + + LD ++ + FS G +Q L ++R L+ R +++ +DE T +DV A
Sbjct: 133 DWLEEVEIDLD-RIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 191
Query: 1083 -LIQKTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLE 1123
L++ +RE ++I+ H L + DR++++ G+V+E
Sbjct: 192 DLLRGLVRE--LGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232
|
Length = 258 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTV------A 352
E L I+ I G +V +G G GKT+ + + G L P S + G V
Sbjct: 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS-GEVRVAGLVPWKRRKK 91
Query: 353 YVPQVSWIF--------NATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDV 401
++ ++ +F + V D+ +A PAR++K +D S +LL ++
Sbjct: 92 FLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELS-----ELLDLEEL 146
Query: 402 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 461
+ R +S GQ+ R +A A+ ++ D+P LD + +
Sbjct: 147 LDTPVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG 204
Query: 462 TRVLVTNQLHFLSQV----DRIILVHEG 485
T VL+T+ H++ + R++++ +G
Sbjct: 205 TTVLLTS--HYMKDIEALARRVLVIDKG 230
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 40/243 (16%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER---GRILIDGFDIAKFGLM 980
V+ L+ TI V ++G +G GK+ T+ R+V LE+ G+I IDG D+ +
Sbjct: 21 VIDNLNLTIKQGTMVTLLGPSGCGKT----TVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ 76
Query: 981 DLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL 1035
R I ++ QS LF V + L + E +R +K+A+
Sbjct: 77 Q-RDIC-MVFQSYALFPHMSLGENVGYGLKMLGVPKE----ERKQR--VKEAL------- 121
Query: 1036 DAQVSEAG------ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 1089
V AG + S GQ+Q ++L+RAL+ + K+L+ DE + +D +++ IR
Sbjct: 122 -ELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIR 180
Query: 1090 EEFKS--CTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1146
E + T L + H + D +++++ G++++ +P+EL S F M G
Sbjct: 181 ELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF--MASFMG 238
Query: 1147 AAN 1149
AN
Sbjct: 239 DAN 241
|
Length = 351 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 53/236 (22%), Positives = 91/236 (38%), Gaps = 46/236 (19%)
Query: 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-PVSDASAVIRGTV------- 351
R L +++L I G + A++G G GK++L+ A+ G+L + A + G V
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73
Query: 352 ------------AYVPQVSW-IFNATVRDNILFG------SAFEPARYEKAIDVTSLQH- 391
A +PQ + F + R+ +L G A + I +L
Sbjct: 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA 133
Query: 392 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV---------YSNSDVFIFDDPLSALD 442
L G DVT +SGG+ RV AR + + D+P +ALD
Sbjct: 134 GATALVGRDVT-------TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD 186
Query: 443 AHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
++ D R + + + +V + DRI ++ +G + G D+
Sbjct: 187 LAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV 242
|
Length = 272 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 38/223 (17%)
Query: 923 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA------- 975
P + +SF++ + VG+ G GAG+S ++ L+ G++ +DG I
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA 325
Query: 976 -KFGLM----DLRKILGIIPQSPV----------LFSGTVRFNLDPFSEHSDADLWEALE 1020
+ G+M D RK GIIP V ++ E +AD + +
Sbjct: 326 IRAGIMLCPED-RKAEGIIPVHSVADNINISARRHHL-RAGCLINNRWEAENADRF--IR 381
Query: 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1080
++K R + N S G +Q L R L K+++LDE T +DV
Sbjct: 382 SLNIKTPSREQLIM----------NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGA 431
Query: 1081 DALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 1121
I I E +L ++ L ++ DRI+++ GR+
Sbjct: 432 KHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRI 474
|
Length = 501 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 30/218 (13%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK------- 976
P + +SF + + +GI G GA ++ ++ TLF I E G I + G I
Sbjct: 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAI 321
Query: 977 ---FGLM-DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK------- 1025
F L+ + R+ GI + F+ + N+ + L+ + +K
Sbjct: 322 NHGFALVTEERRSTGIYAYLDIGFNSLIS-NIRNYKNK-----VGLLDNSRMKSDTQWVI 375
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1085
D++R + G Q+ + S G +Q + + R LL + +IL+LDE T +DV I
Sbjct: 376 DSMRVKTPGHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIY 431
Query: 1086 KTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRV 1121
+ I E K ++II+ + ++ DRIL++ +G V
Sbjct: 432 QLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
Length = 491 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 4e-05
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 34/167 (20%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVI------------- 347
L I+++I S+VA +G +G GK++ + + +L P + I
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 348 ----RGTVAYVPQVSWIFNATVRDNILFG--------SAFEPARYEKAIDVTSLQHDLDL 395
R V V Q F ++ +N+ +G +AF R E+ + +L ++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK- 137
Query: 396 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442
++ E +SGGQ+QR+ +ARA+ + V + D+P SALD
Sbjct: 138 ------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178
|
Length = 250 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 12/176 (6%)
Query: 940 GIVGRTGAGKSSMLNTLFRIVELE-----RGRILI--DGFDIAKFGL--MDLRKILGIIP 990
++G +G GKS+ L R+ +L G I++ D +I + +++R + ++
Sbjct: 46 ALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVF 105
Query: 991 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSL--GLDAQVSEAGENFSV 1048
Q P F ++ N+ + ++ +++A+R +L + ++ + N S
Sbjct: 106 QKPNPFPKSIFENV-AYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSG 164
Query: 1049 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 1104
GQ+Q L ++RAL +IL+ DE T+A+D A I++ I + T+LI+ H +
Sbjct: 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNM 220
|
Length = 265 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 5e-05
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 389 LQHD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442
L HD + LP T +G +SGGQKQR+S+ARA+ N + I D+ S+LD
Sbjct: 557 LIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
|
Length = 1466 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 5e-05
Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 41/203 (20%)
Query: 941 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD--LRKILGIIPQSPV-LFS 997
++G +GAGK+++LN L E ++ G + +D ++ +G + Q + L +
Sbjct: 794 LMGASGAGKTTLLNVL---AERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPT 850
Query: 998 GTVRFNLD-----------PFSEHSD--ADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 1044
TVR +L SE + ++ + LE DA+ V GE
Sbjct: 851 STVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAV----------VGVPGE 900
Query: 1045 NFSVGQRQLLSLSRALLRRSKILV-LDEATAAVDVRTDALIQKTIREEFKS-----CTML 1098
+V QR+ L++ L+ + K+L+ LDE T+ +D +T I K +R+ CT+
Sbjct: 901 GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTI- 959
Query: 1099 IIAHRLNTII--DCDRILLLDSG 1119
H+ + I+ + DR+LLL G
Sbjct: 960 ---HQPSAILFEEFDRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 24/239 (10%)
Query: 908 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
I ++V Y+ P L ++ TI +G TG+GKS+++ L + +
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 965 GRILIDGFDIAKFG----LMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEA 1018
G + +D I + +RK +G++ Q P LF TV ++ ++ EA
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA 121
Query: 1019 LERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1077
A K A+ +G+ + E S GQ + ++++ L KILVLDE TA +D
Sbjct: 122 EALAREKLAL----VGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
Query: 1078 VRTDALIQKTIREEFKSC-----TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130
+ +K + FK T++++ H ++ + + D + +L+ G+++ P+++
Sbjct: 178 PKG----RKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
Length = 280 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 6e-05
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 46/189 (24%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG------------ 971
P+L I +++V +VGR GAGKS+++ L V L+ GRI+ +
Sbjct: 17 PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPP 76
Query: 972 -------FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD------ADLWEA 1018
+D G+ + + L L ++ S+ A L E
Sbjct: 77 RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVE----------TDPSEKNLNELAKLQEQ 126
Query: 1019 LERA---HLKDAIRRN--SLGLDA--QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1071
L+ L++ I LGLD +S S G + +L RAL+ +L+LDE
Sbjct: 127 LDHHNLWQLENRINEVLAQLGLDPDAALSS----LSGGWLRKAALGRALVSNPDVLLLDE 182
Query: 1072 ATAAVDVRT 1080
T +D+ T
Sbjct: 183 PTNHLDIET 191
|
Length = 635 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 7e-05
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 51/193 (26%)
Query: 307 NLDIPV-GSLVAIVGGTGEGKTSLISAMLGELPP-----VSDAS--AVI---RGT----- 350
L IP G + I+G G GKT+ + + GEL P + S V+ RGT
Sbjct: 92 GLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY 151
Query: 351 ----------VA----YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 396
V YV + +F VR+ L E + ++ ++ L++ LD
Sbjct: 152 FKKLYNGEIKVVHKPQYVDLIPKVFKGKVRE--LLKKVDERGKLDEVVERLGLENILD-- 207
Query: 397 PGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RC 453
R + +SGG+ QRV++A A+ ++D + FD+P S LD RQ + R
Sbjct: 208 ----------RDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI---RQRLNVARL 254
Query: 454 IRGELSGKTRVLV 466
IR EL+ VLV
Sbjct: 255 IR-ELAEGKYVLV 266
|
Length = 590 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 8e-05
Identities = 57/222 (25%), Positives = 108/222 (48%), Gaps = 34/222 (15%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
V+ L TI + + ++G +G GK+++L + + GRI++DG DI +
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT--HVPAEN 85
Query: 984 KILGIIPQSPVLFSG-TVRFNLD--------PFSEHSDADLWEALERAHLKDAIRRNSLG 1034
+ + + QS LF TV N+ P +E + EAL L++ +R
Sbjct: 86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAE-ITPRVMEALRMVQLEEFAQRKPHQ 144
Query: 1035 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1094
L S GQ+Q ++++RA++ + K+L+LDE+ +A+D + ++K ++ E K+
Sbjct: 145 L-----------SGGQQQRVAIARAVVNKPKVLLLDESLSALDYK----LRKQMQNELKA 189
Query: 1095 ------CTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEE 1129
T + + H + + DRI+++ GR+ + TP E
Sbjct: 190 LQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231
|
Length = 375 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 8e-05
Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 28/218 (12%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLI---SAMLGELPPVSDASAV------------- 346
L I+LD L A++G +G GK++ + + M ++ + +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 347 ---IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLLPGGD 400
+R V V Q F +V DN+ +G + ++ ID SL+ D
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139
Query: 401 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 460
+ SGGQ+QR+ +ARA+ V + D+P SALD ++ + + EL
Sbjct: 140 --NLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLM--ELKH 195
Query: 461 K-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 496
+ T ++VT+ L ++ D+ + G + E G E++
Sbjct: 196 QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 8e-05
Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 35/206 (16%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQV 357
+ L +NL I G + A++G G GK++L ++G P V G + + +
Sbjct: 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPKYE----VTEGEILFKGED 65
Query: 358 SWIFNATVRDNILFG--SAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN--IS 412
I + + G AF P V + D L R VN S
Sbjct: 66 --ITDLPPEERARLGIFLAFQYPPEIP---GVKNA----DFL----------RYVNEGFS 106
Query: 413 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQL 470
GG+K+R + + + D+ I D+P S LD R V + +R E GK+ +++T+
Sbjct: 107 GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE--GKSVLIITHYQ 164
Query: 471 HFLSQV--DRIILVHEGMVKEEGTFE 494
L + DR+ ++++G + + G E
Sbjct: 165 RLLDYIKPDRVHVLYDGRIVKSGDKE 190
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 8e-05
Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 45/237 (18%)
Query: 912 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF-------------- 957
E+VV RY L+ L T P VGI+G G GKS+ L L
Sbjct: 78 EEVVHRYGVN-GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPP 135
Query: 958 ---RIVELERGRILIDGFDIAKFGLMDLRKILGI--IPQSPVLFSGTVRFNLDPFSEHSD 1012
+++ RG L + F G +LR + + P + G V
Sbjct: 136 SWDEVIKRFRGTELQNYFKKLYEG--ELRAVHKPQYVDLIPKVVKGKVG----------- 182
Query: 1013 ADLWEAL-ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1071
+L + + ER + + R LGL+ + S G+ Q ++++ ALLR + + DE
Sbjct: 183 -ELLKKVDERGKFDEVVER--LGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDE 239
Query: 1072 ATAAVDVRTDALIQKTIREEFKSC-TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1127
++ +D+R + IRE + ++++ H L ++D L D +L Y P
Sbjct: 240 PSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLD----YLSDFVHIL-YGEP 290
|
Length = 591 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-05
Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 13/203 (6%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 987
+S + + +G+ G GAG++ + TL+ + GRI+++G +I L + L
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 988 IIP---QSPVLF-SGTVRFNLDPFSEHSDADLW--EALERAHLKDAIRRNSLGLD-AQVS 1040
+P QS L+ + +N+ + H+ W A E A L + RR +L +
Sbjct: 342 YLPEDRQSSGLYLDAPLAWNVCALT-HNRRGFWIKPARENAVL-ERYRR-ALNIKFNHAE 398
Query: 1041 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT-MLI 1099
+A S G +Q + +++ L ++L++DE T VDV I + IR +L
Sbjct: 399 QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF 458
Query: 1100 IAHRLNTIID-CDRILLLDSGRV 1121
I+ L I DR+L++ G +
Sbjct: 459 ISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 8e-05
Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 60/201 (29%)
Query: 935 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV 994
P + + IVG G+GK+++ L R + G +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV--------------------------- 33
Query: 995 LFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1054
+ + + E L + V + S R L
Sbjct: 34 -----IYIDGEDILEEVLDQLLLII-------------------VGGKKASGSGELRLRL 69
Query: 1055 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR-------EEFKSCTMLIIAHRLNTI 1107
+L+ A + +L+LDE T+ +D +AL+ + K+ T+++ + +
Sbjct: 70 ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
Query: 1108 IDCDRILLLDSGRVLEYDTPE 1128
+L R +
Sbjct: 130 G--PALLRRRFDRRIVLLLIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 51/197 (25%)
Query: 313 GSLVAIVGGTGEGKTSLISAMLGELPP-------VSDASAVI---RGT------------ 350
G ++ +VG G GK++ + + G+L P D ++ RG+
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEG 85
Query: 351 -------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 403
YV + V + L E + ++ +D L+H LD
Sbjct: 86 DVKVIVKPQYVDLIPKAVKGKVGE--LLKKKDERGKLDELVDQLELRHVLD--------- 134
Query: 404 IGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSG 460
R + +SGG+ QRV++A A+ ++D + FD+P S LD +Q + R IR
Sbjct: 135 ---RNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI---KQRLNAARLIRELAED 188
Query: 461 KTRVLVTNQLHFLSQVD 477
VLV H L+ +D
Sbjct: 189 DNYVLVVE--HDLAVLD 203
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 41/219 (18%)
Query: 912 EDVVLRYRPELPPVLHGLSFTIPPSDKV-GIVGRTGAGKSSMLNTLF------------- 957
E+ V RY L+GL IP KV GI+G G GK++ + L
Sbjct: 77 EEPVHRYGVN-GFKLYGLP--IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEE 133
Query: 958 ----RIVELERGRILIDGFDIAKFGLMDLRKILGI--IPQSPVLFSGTVRFNLDPFSEHS 1011
+++ RG L + F G +++ + + P +F G VR
Sbjct: 134 PSWDEVLKRFRGTELQNYFKKLYNG--EIKVVHKPQYVDLIPKVFKGKVR---------- 181
Query: 1012 DADLWE-ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 1070
+L + ER L + + R LGL+ + S G+ Q ++++ ALLR + D
Sbjct: 182 --ELLKKVDERGKLDEVVER--LGLENILDRDISELSGGELQRVAIAAALLRDADFYFFD 237
Query: 1071 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 1109
E T+ +D+R + + IRE + +L++ H L ++D
Sbjct: 238 EPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL-AVLD 275
|
Length = 590 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 34/182 (18%)
Query: 313 GSLVAIVGGTGEGKTSLISAMLGE--------------LPPVSDASAVIRG----TVAYV 354
G L A++G +G GKT+L+ + G P + A I G +
Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS 965
Query: 355 PQVSWIFNATVRDNILFGSAF-----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 409
PQV TVR+++++ SAF E ++ EK + V + ++L D +G GV
Sbjct: 966 PQV------TVRESLIY-SAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAI-VGLPGV 1017
Query: 410 N-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVT 467
+S Q++R+++A + +N + D+P S LDA V R +R + +G+T V
Sbjct: 1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDTGRTVVCTI 1076
Query: 468 NQ 469
+Q
Sbjct: 1077 HQ 1078
|
Length = 1470 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 38/226 (16%)
Query: 306 INLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVIR--GTVAYVP------ 355
++L IP + A++G +G GK++L+ L EL + +R G Y P
Sbjct: 23 VDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82
Query: 356 ---QVSWIF-------NATVRDNILFGSAFE---------PARYEKAIDVTSLQHDLDLL 396
+V +F + T+ DN+ G R E A+ +L ++
Sbjct: 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-- 140
Query: 397 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 456
+ + N+SGGQ+QR+ +ARA+ + + D+P + +D VG + +
Sbjct: 141 -----DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDP-VGTAKIEELLFE 194
Query: 457 ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGE 501
T VLVT+ ++V D + ++ G + E G + N E
Sbjct: 195 LKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPE 240
|
Length = 253 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 78/229 (34%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TV--AYVPQVSWIF 361
+++ +P G +V ++G G GK++L + G+ P D+ + G TV AYV Q
Sbjct: 340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGETVKLAYVDQ----- 392
Query: 362 NATVRDNILFGSAFEPAR--YEKAIDVTSLQHDLDLLPGGDVTEIGERGVN--------- 410
RD + +P + +E+ G D+ ++G+R V
Sbjct: 393 ---SRDAL------DPNKTVWEEISG------------GLDIIQLGKREVPSRAYVGRFN 431
Query: 411 ------------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR------QVFDR 452
+SGG++ RV +A+ + S +V + D+P + LD R F
Sbjct: 432 FKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAG 491
Query: 453 CIRGELSGKTRVLVTNQLHFLSQVDRI---ILVHEG---MVKEEGTFED 495
C V++++ FL DRI IL EG + EG + +
Sbjct: 492 CA---------VVISHDRWFL---DRIATHILAFEGDSHVEWFEGNYSE 528
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-04
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 310 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRDN 368
I G ++ IVG G GKT+ + G L P ++Y PQ + ++ TV D
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDE-GEVDPELKISYKPQYIKPDYDGTVED- 419
Query: 369 ILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYS 427
L S D+ S + +++ + + ++ V +SGG+ QRV++A +
Sbjct: 420 -LLRSI--------TDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSR 470
Query: 428 NSDVFIFDDPLSALD 442
++D+++ D+P + LD
Sbjct: 471 DADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 411 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQ 469
+SGG++QRV++ARA DV D+P LD G ++ D G T +LVT+
Sbjct: 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206
Query: 470 LHFLSQVDRIILVHEGMVKEE 490
L ++ DR + + G ++EE
Sbjct: 207 LQLAARCDRRLRLVNGQLQEE 227
|
Length = 228 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 44/229 (19%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASA--------------- 345
L +NL+IP ++ A++G +G GK++L+ L EL P + S
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 346 VIRGTVAYVPQV-SWIFNATVRDNILFGSAFE---------PARYEKAIDVTSLQHDLDL 395
+R V V Q+ + I N ++ +N+ G R A++ L ++
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK- 137
Query: 396 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 455
+ +SGGQ+QR+ +ARA+ +V + D+P + LD ++ +
Sbjct: 138 ------DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI--ESLF 189
Query: 456 GELSGK-TRVLVTNQLHFLSQVDRI----ILVHEGMVKEEGTFEDLSNN 499
EL T VLVT HF Q RI +++G + E G ++ N
Sbjct: 190 LELKKDMTIVLVT---HFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235
|
Length = 250 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 55/267 (20%), Positives = 108/267 (40%), Gaps = 40/267 (14%)
Query: 272 LLPNPPLTSGLPAISIRNGYFSWD-SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 330
L P+ P G + RN WD R + +++ + G ++ + G G G+T L+
Sbjct: 245 LYPHEPHEIGDVILEARN-LTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELV 303
Query: 331 SAMLGELPPVSDASA--------------VIRGTVAYVPQ------------VSWIFNAT 364
A+ G P + + IR +A VP+ V +
Sbjct: 304 QALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLS 363
Query: 365 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 424
V + F + A + I +++Q L + IG +SGG +Q+ +A+
Sbjct: 364 VLKSFCFKMRIDAAAELQIIG-SAIQR-LKVKTASPFLPIG----RLSGGNQQKAVLAKM 417
Query: 425 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL-HFLSQVDRIILVH 483
+ +N V I D+P +D +++ + G ++V+++L L DR++++
Sbjct: 418 LLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIG 477
Query: 484 EGMVKEEGTFEDLSNNGELFQKLMENA 510
EG +K D N+ ++++ A
Sbjct: 478 EGKLK-----GDFVNHALTQEQVLAAA 499
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 42/160 (26%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP--------------PVSDAS 344
+ P L + + + G +V ++G G G ++L+ A+ P + +
Sbjct: 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78
Query: 345 AVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 403
G + YV + F TVR+ + F + G +
Sbjct: 79 EKYPGEIIYVSEEDVHFPTLTVRETLDF--------------ALRCK-------GNEFV- 116
Query: 404 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 443
RG ISGG+++RVS+A A+ S + V +D+ LD+
Sbjct: 117 ---RG--ISGGERKRVSIAEALVSRASVLCWDNSTRGLDS 151
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 39/220 (17%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLMD 981
+L G+ + + + ++G +G+GKS++L L + + G + + G + +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 982 LR-KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS-------- 1032
LR K +G + QS F L P ALE L +R S
Sbjct: 85 LRAKHVGFVFQS---------FMLIP--------TLNALENVELPALLRGESSRQSRNGA 127
Query: 1033 ------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1086
LGL ++ S G++Q ++L+RA R +L DE T +D +T I
Sbjct: 128 KALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD 187
Query: 1087 ---TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1123
++ E + T++++ H L CDR L L +G++ E
Sbjct: 188 LLFSLNREHGT-TLILVTHDLQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 10/94 (10%)
Query: 412 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQ 469
SGGQ QR+ +ARA+ + I D+P+SALD + QV + + ++ E+ G + + +
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM-GLSLIFIA-- 219
Query: 470 LHFLSQV----DRIILVHEGMVKEEGTFEDLSNN 499
H L+ V DR+++++ G E GT++++ +N
Sbjct: 220 -HDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN 252
|
Length = 331 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 4e-04
Identities = 23/81 (28%), Positives = 49/81 (60%), Gaps = 9/81 (11%)
Query: 1044 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALIQKTIREEFKSCTMLIIAH 1102
E S G++ L+L++ LL +L+LDE T +D+ + +AL + ++ E+ T+++++H
Sbjct: 69 EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE-ALK-EYP-GTVILVSH 125
Query: 1103 -R--LNTIIDCDRILLLDSGR 1120
R L+ + +I+ L+ G+
Sbjct: 126 DRYFLDQV--ATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 29/209 (13%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD------------ASAVIRGTVA 352
N+ ++IP G AI+G G GK++L+ + + P AS + +
Sbjct: 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84
Query: 353 YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSL-QHDLDLLPGG----DVTEIGER 407
+ Q NAT +I RY T + D + + +T + ++
Sbjct: 85 LLAQ-----NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ 139
Query: 408 GVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLV 466
V+ +SGGQ+QR +A + + + + D+P + LD + Q+ + EL+ + +
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD--ISHQIDLLELLSELNREKGYTL 197
Query: 467 TNQLHFLSQVDR----IILVHEGMVKEEG 491
LH L+Q R +I + EG + +G
Sbjct: 198 AAVLHDLNQACRYASHLIALREGKIVAQG 226
|
Length = 265 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-04
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 49/185 (26%)
Query: 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGTVAYVPQVS 358
+ L +I+L G+ + ++G G GK++L+ M G + +A V Y+PQ
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEP 77
Query: 359 WI-FNATVRDNILFG---------------SAF------------EPARYEKAIDVTSLQ 390
+ TVR+N+ G + F E A ++ ID
Sbjct: 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADA- 136
Query: 391 HDLDL----------LPGGD--VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 438
DLD P D VT +SGG+++RV++ R + S D+ + D+P
Sbjct: 137 WDLDRKLEIAMDALRCPPWDADVT-------KLSGGERRRVALCRLLLSKPDMLLLDEPT 189
Query: 439 SALDA 443
+ LDA
Sbjct: 190 NHLDA 194
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 21/173 (12%)
Query: 932 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 991
+I S+ +GI+G G GK++ + L +++ + G I I+ ++ K I
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-------YKPQYIKAD 73
Query: 992 SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1051
+ GTVR D S + + + ++ + LD +V E S G+
Sbjct: 74 ----YEGTVR---DLLSSITKDFYTHPYFKTEIAKPLQIEQI-LDREVPE----LSGGEL 121
Query: 1052 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAH 1102
Q ++++ L + + I +LDE +A +DV + K IR E T ++ H
Sbjct: 122 QRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 45/210 (21%), Positives = 87/210 (41%), Gaps = 32/210 (15%)
Query: 941 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTV 1000
+VG GAGKS++L + + G I G + + +L + + Q
Sbjct: 30 LVGPNGAGKSTLLARMAGMTSGS-GSIQFAGQPLEAWSATELARHRAYLSQQ-------- 80
Query: 1001 RFNLDPFSEHSDADLWEAL-------ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1053
PF+ +W L R L + + +L LD ++ + S G+ Q
Sbjct: 81 --QTPPFAMP----VWHYLTLHQPDKTRTELLNDVA-GALALDDKLGRSTNQLSGGEWQR 133
Query: 1054 LSLSRALLR-------RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA-HRLN 1105
+ L+ +L+ ++L+LDE ++DV + + + + + ++++ H LN
Sbjct: 134 VRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN 193
Query: 1106 -TIIDCDRILLLDSGRVLEYDTPEELLSNE 1134
T+ R LL G++L EE+L+
Sbjct: 194 HTLRHAHRAWLLKRGKLLASGRREEVLTPP 223
|
Length = 248 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 411 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQ 469
+SGGQ+QR+ +ARA+ D+ + D+P SALD Q+ + EL T ++VT
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMF--ELKKNYTIIIVT-- 219
Query: 470 LHFLSQVDRI 479
H + Q R
Sbjct: 220 -HNMQQAARA 228
|
Length = 267 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 29/219 (13%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG-----FDIAKFGLM 980
+SF + P + +GIVG +G+GK+++LN L + + G + D+
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 981 DLRKIL----GIIPQSP-------VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 1029
+ R++L G + Q P V G + L D+ RA D +
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDI-----RATAGDWLE 136
Query: 1030 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQ 1085
R + ++ + FS G +Q L ++R L+ +++ +DE T +DV A L++
Sbjct: 137 RVEIDAA-RIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLR 195
Query: 1086 KTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLE 1123
+RE ++I+ H L + R+L++ GRV+E
Sbjct: 196 GLVRE--LGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232
|
Length = 258 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 7e-04
Identities = 69/237 (29%), Positives = 103/237 (43%), Gaps = 72/237 (30%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRKI 985
LSF P K+G++G GAGKS TL RI + G D G K+
Sbjct: 28 LSFF--PGAKIGVLGLNGAGKS----TLLRI---------MAGVDKEFEGEARPAPGIKV 72
Query: 986 LGIIPQSPVL-FSGTVRFN-----------LDPFSEHS------DADLWEAL--ERAHLK 1025
G +PQ P L TVR N LD F+E DAD +AL E+ L+
Sbjct: 73 -GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADF-DALAAEQGELQ 130
Query: 1026 DAI-RRNSLGLDAQVSEAGE------------NFSVGQRQLLSLSRALLRRSKILVLDEA 1072
+ I ++ LD+Q+ A + S G+R+ ++L R LL + +L+LDE
Sbjct: 131 EIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEP 190
Query: 1073 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR---------ILLLDSGR 1120
T +D + A +++ + ++ T++ + H DR IL LD GR
Sbjct: 191 TNHLDAESVAWLEQFLH-DYPG-TVVAVTH--------DRYFLDNVAGWILELDRGR 237
|
Length = 556 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-04
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 18/170 (10%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA--VIRGTVAYVP 355
A +P + ++L + G ++A+VGG+G GK+ +A LG LP +A V+ P
Sbjct: 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73
Query: 356 -QVSWIFNATVRDNILFGSAFEPAR------------YEKAIDVTSLQHDLDLLPGGDVT 402
+ AT+ N SAF P K D +L L+ + +
Sbjct: 74 CALRGRKIATIMQNPR--SAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA 131
Query: 403 EIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 451
+ + +SGG QR+ +A A+ + I D+P + LD ++ D
Sbjct: 132 RVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILD 181
|
Length = 254 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 7e-04
Identities = 32/163 (19%), Positives = 49/163 (30%), Gaps = 44/163 (26%)
Query: 313 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFG 372
G ++ IVG G GKT+L A+ EL P I G + +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLL---------- 51
Query: 373 SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 432
+G + + SG + R+++A A DV
Sbjct: 52 -----------------------------IIVGGKKASGSGELRLRLALALARKLKPDVL 82
Query: 433 IFDDPLSALDAHVGRQVFDRCIRGEL-----SGKTRVLVTNQL 470
I D+ S LDA + L V++T
Sbjct: 83 ILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 8e-04
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 36/172 (20%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM---------------LGELPPVSDA 343
P L N++L + G VA+ G +G GK++L+ ++ G ++ A
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 344 S-----AVIRGTVAYV-------PQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 391
S V R T+ YV P+VS + + G E AR + L
Sbjct: 80 SPREVLEVRRKTIGYVSQFLRVIPRVSAL-EVVAEPLLERGVPREAARARARELLARLNI 138
Query: 392 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 443
L T SGG++QRV++AR ++ + + D+P ++LDA
Sbjct: 139 PERLWHLPPAT--------FSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 24/182 (13%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---VAYVP 355
+R L +++L++ G ++ ++G G GK++L+ +LG + P D + R + YVP
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNGKLRIGYVP 73
Query: 356 QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE----IGERGVNI 411
Q ++ + T+ P + + + D+LP + I +
Sbjct: 74 QKLYL-DTTL-----------PLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKL 121
Query: 412 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC--IRGELSGKTRVLVTNQ 469
SGG+ QRV +ARA+ + + + D+P +D + ++D +R EL ++V++
Sbjct: 122 SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRREL-DCAVLMVSHD 180
Query: 470 LH 471
LH
Sbjct: 181 LH 182
|
Length = 251 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-04
Identities = 64/264 (24%), Positives = 105/264 (39%), Gaps = 69/264 (26%)
Query: 841 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP-SEAPLVIESNRP 899
F G+L L T +L+ A +A+ L E++ ++LP + P
Sbjct: 200 DFVQFAGVLADCTLAETGEREEILQQALVAQ--LAHSEQLEG-VQLPEPDEPSARH--AL 254
Query: 900 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 959
P P I + V+ Y P+LH LS+ + P + IVG GAGKS++L+
Sbjct: 255 PANEPR---IVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLS----- 304
Query: 960 VELERGRILIDG-------FDIAKFG--------LMDLRKILGIIPQSPVL---FSGTVR 1001
LI G D+ FG + D++K +G + S L S +VR
Sbjct: 305 --------LITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVR 356
Query: 1002 -------------FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG-ENFS 1047
+ + A W + LG+D + ++A + S
Sbjct: 357 NVILSGFFDSIGIYQAVSDRQQKLAQQWLDI-------------LGIDKRTADAPFHSLS 403
Query: 1048 VGQRQLLSLSRALLRRSKILVLDE 1071
GQ++L + RAL++ +L+LDE
Sbjct: 404 WGQQRLALIVRALVKHPTLLILDE 427
|
Length = 490 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 9e-04
Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 42/224 (18%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI----AKFGL 979
P ++ +SFT+ + +G+ G GAG++ ++ L+ + G + +DG ++ + GL
Sbjct: 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGL 325
Query: 980 M-------DLRK----ILGIIPQSPVLFSGTVRFN-----LDPFSEHSDADLWEALERAH 1023
+ RK +LG+ +V+ N L FS + L A E+
Sbjct: 326 ANGIVYISEDRKRDGLVLGM----------SVKENMSLTALRYFS-RAGGSLKHADEQQA 374
Query: 1024 LKDAIRRNSL---GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1080
+ D IR ++ ++ + S G +Q ++++R L+ R K+L+LDE T VDV
Sbjct: 375 VSDFIRLFNIKTPSMEQAIG----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA 430
Query: 1081 DALIQKTIREEFKSCTMLII--AHRLNTIID-CDRILLLDSGRV 1121
I + I +FK+ + II + + ++ DRIL++ GR+
Sbjct: 431 KKEIYQLI-NQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 54/227 (23%), Positives = 94/227 (41%), Gaps = 37/227 (16%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-------------------ELP 338
++ L +NL + G + AI+G G GK++L + G EL
Sbjct: 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELE 70
Query: 339 PVSDASAVIRGTVAYVPQVSWIFNAT-VRDNILFGSAFEPARYEKAIDV----TSLQHDL 393
P A A + Y ++ + N +R + +A AR E+ +D+ L+ L
Sbjct: 71 PDERARAGLFLAFQYPEEIPGVSNLEFLRSAL---NARRSARGEEPLDLLDFLKLLKAKL 127
Query: 394 DLLPGGDVTEIGERGVNI--SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 451
LL G E R VN SGG+K+R + + + I D+ S LD + V +
Sbjct: 128 ALL--GMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 452 RCIRGELSGKTR--VLVTNQLHFLSQV--DRIILVHEGMVKEEGTFE 494
I L R +++T+ L+ + D + ++ +G + + G E
Sbjct: 186 -GI-NRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 48/219 (21%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI---AKFGLM 980
+ +S T+P I+G +G GK+++L + + + G IL DG +I ++ L
Sbjct: 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80
Query: 981 DLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ 1038
+RK + ++ QS LF+ V N+ P EH+ L L + + ++ ++GL
Sbjct: 81 TVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTV--MMKLEAVGLRGA 136
Query: 1039 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CT 1096
S G + +L+RA+ +++ DE D T ++ K I E + T
Sbjct: 137 AKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVT 196
Query: 1097 MLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
++++H + ++ D ++ +++ + + + L +N
Sbjct: 197 CVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235
|
Length = 269 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 25/89 (28%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 411 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTN 468
+SGG +QRV +A A+ V I D+P +ALD + Q+ + ++ E+S + +T+
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGV-IFITH 227
Query: 469 QLHFLSQV-DRIILVHEGMVKEEGTFEDL 496
+ ++++ DR++++++G E G+ E +
Sbjct: 228 DMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
Length = 623 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 43/201 (21%), Positives = 90/201 (44%), Gaps = 31/201 (15%)
Query: 265 LLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGE 324
++ E+ + P P + + + Y+ E+ + +I++DI ++ A++G +G
Sbjct: 4 MVREKIEIAPFPEAKEHILEVKDLSIYY-----GEKRAVNDISMDIEKHAVTALIGPSGC 58
Query: 325 GKTSLISAM--LGELPPVSDASAVI-----------------RGTVAYVPQVSWIFNATV 365
GK++ + ++ + +L P + + I R + V Q F ++
Sbjct: 59 GKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSI 118
Query: 366 RDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER----GVNISGGQKQRVSM 421
+NI + R + +D ++ L D E+ +R +++SGGQ+QR+ +
Sbjct: 119 YNNITHALKYAGERRKSVLD-EIVEESLTKAALWD--EVKDRLHSSALSLSGGQQQRLCI 175
Query: 422 ARAVYSNSDVFIFDDPLSALD 442
AR + V + D+P SALD
Sbjct: 176 ARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 410 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ 469
+SGG +Q+V++AR + + V I D+P +D ++++ + + G + +LV+++
Sbjct: 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454
Query: 470 L-HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA-GK 512
+ L DRI+++HEG + E T E + +KLM A GK
Sbjct: 455 MPEVLGMSDRILVMHEGRISGEFTREQATQ-----EKLMAAAVGK 494
|
Length = 501 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 31/176 (17%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
PV L F + + + + G GAGK+++L L ++ +E G+I IDG + D
Sbjct: 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR---GDRS 81
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI--RR------NSL-- 1033
+ + + P L ADL LE H + RR ++L
Sbjct: 82 RFMAYLGHLPGL----------------KADL-STLENLHFLCGLHGRRAKQMPGSALAI 124
Query: 1034 -GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1088
GL S GQ++ L+L+R L + + +LDE A +D+ L+ + I
Sbjct: 125 VGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
|
Length = 214 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.003
Identities = 60/239 (25%), Positives = 100/239 (41%), Gaps = 58/239 (24%)
Query: 867 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPP--PGWPSSGSIKFEDVVLRYRPELPP 924
ASL ++ + A++R+G+ + ++ E P PG P I F D Y P P
Sbjct: 468 ASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPI---ISFSDASFGY-PGGPL 523
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
+ L+F I ++ +VG G GKS++L LI G +L+
Sbjct: 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILK-------------LISG---------ELQP 561
Query: 985 ILGIIPQSPVLFSGTVRFNLDPFSEH--------SDADLW---------EALERAHLKDA 1027
G + +S VR + FS+H S+ L+ E RAHL
Sbjct: 562 SSGTVFRSA-----KVRMAV--FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF 614
Query: 1028 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ 1085
+L L + +G GQ+ ++ ++ ++ IL+LDE + +D+ +ALIQ
Sbjct: 615 GVTGNLALQPMYTLSG-----GQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQ 668
|
Length = 718 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 51/239 (21%), Positives = 87/239 (36%), Gaps = 39/239 (16%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS------------DASAVIR 348
+ +I+ +IP G +V +G G GK++ + + G L P S +R
Sbjct: 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR 97
Query: 349 --GTVAYVPQVSWIFNATVRDNILFGSAFE--PARYEKAIDVTSLQHDLDLLPGGDVTEI 404
G V W + + +E + + +D L LDL +
Sbjct: 98 SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLD--FLTEILDLEG-----FL 150
Query: 405 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 464
+S GQ+ R +A A+ V D+P LD V Q R E + + +
Sbjct: 151 KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD--VNAQANIREFLKEYNEERQA 208
Query: 465 LVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE 519
V H + DR++L+ +G + +GT +L E G +E+ E
Sbjct: 209 TVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLA----------QLQEQFGPYKEFSVE 257
|
Length = 325 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.004
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 412 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 451
SGGQ+QR+ +ARA+ N V I D+ +SALD + Q+ +
Sbjct: 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN 504
|
Length = 623 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 43/217 (19%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDAS--- 344
A L ++ ++ G ++ +VG G GK++L++ M G LP P+ S
Sbjct: 7 AVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAE 66
Query: 345 -AVIRGTVAYVPQVSWIFNATVRDNI-LFGSA-FEPARYEKAI-DVTSLQHDLDLLPGGD 400
A R ++ Q + F V + L A+ +V D L
Sbjct: 67 LARHRAYLS--QQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG--- 121
Query: 401 VTEIGERGVN-ISGGQKQRVSMA-------RAVYSNSDVFIFDDPLSALDAHVGRQV-FD 451
R VN +SGG+ QRV +A + + + D+P+++LD V +Q D
Sbjct: 122 ------RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD--VAQQAALD 173
Query: 452 RCIRGELSGKTR-VLVTNQ-L-HFLSQVDRIILVHEG 485
R + EL + V++++ L H L DR+ L+ +G
Sbjct: 174 RLLS-ELCQQGIAVVMSSHDLNHTLRHADRVWLLKQG 209
|
Length = 248 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1293 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-188 Score=1778.88 Aligned_cols=1130 Identities=51% Similarity=0.858 Sum_probs=1040.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHH
Q 000774 5 GPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQV 84 (1293)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~ 84 (1293)
.|.|.+|++++.++++.++..++.++|++...+.+.|+|..+...+|+|.++++.......+.|+++|+|++|++++.++
T Consensus 236 ~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~ 315 (1381)
T KOG0054|consen 236 LPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDA 315 (1381)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000774 85 CQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKC 164 (1293)
Q Consensus 85 ~~~l~~~~~~~~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~ 164 (1293)
..++|.+|..|++++++++++|..+|+++++|++++++++|++.++.+++++++++.++.+|+|.+.++|+++||++||+
T Consensus 316 ~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~ 395 (1381)
T KOG0054|consen 316 ACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKL 395 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 000774 165 YAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFT-LLGGDLTPARAFTSLSLFAVLRFPLFM 243 (1293)
Q Consensus 165 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~lt~~~~~~~l~~~~~l~~pl~~ 243 (1293)
|+||+.|.+++++.|++|++..++..++.++..++..++|.++.+++|++|. ..++.+++..+|+++++|+.+..|+..
T Consensus 396 yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~ 475 (1381)
T KOG0054|consen 396 YAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFM 475 (1381)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 678889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCC--CCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcC
Q 000774 244 LPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGG 321 (1293)
Q Consensus 244 l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~--~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~ 321 (1293)
+|..+..+.++.+|++|+.+|+..++....... +..+....++++|.+|+|++.+..+.|+||||+|++|+.+||||+
T Consensus 476 ~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~ 555 (1381)
T KOG0054|consen 476 LPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGP 555 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECC
Confidence 999999999999999999999988776533222 223345579999999999875556799999999999999999999
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCceeecCcEEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCCCc
Q 000774 322 TGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDV 401 (1293)
Q Consensus 322 ~GsGKSTLl~~l~g~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~ 401 (1293)
.|||||+||.+|+|++++.+| .+.+++.++||||+||+|++||||||+||.++++++|++++++|+|.+|++.+|.||.
T Consensus 556 vGsGKSSLL~AiLGEm~~~sG-~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~ 634 (1381)
T KOG0054|consen 556 VGSGKSSLLSAILGEMPKLSG-SVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDL 634 (1381)
T ss_pred CCCCHHHHHHHHhcCcccccc-eEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCc
Confidence 999999999999999999999 7888999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEE
Q 000774 402 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIIL 481 (1293)
Q Consensus 402 t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~ 481 (1293)
|+|||+|.+|||||||||+||||+|+|+|||+||||+|++|.++.++|+++|++...++||+|+|||+++++++||+|++
T Consensus 635 TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iiv 714 (1381)
T KOG0054|consen 635 TEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIV 714 (1381)
T ss_pred ceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred EeCCeEEEecChHHHhhccHHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCC-CCCCCCCCccccccccccccccch
Q 000774 482 VHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAAN-GVDNDLPKEASDTRKTKEGKSVLI 560 (1293)
Q Consensus 482 l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1293)
|+||+|.+.|+|+|+++.+..+.++........... ...+ .......+.... ................+.......
T Consensus 715 l~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1381)
T KOG0054|consen 715 LKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEE--ASEK-DLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLV 791 (1381)
T ss_pred ecCCeEecccCHHHHHhcchhHHHHhhccchhhccc--cccc-cccccccccchhhhhhhhhcccccccccccchhhHHH
Confidence 999999999999999998888888743222111110 0000 000000000000 000000000000011111133455
Q ss_pred hhhhhhcCcccHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCC---CCchHHHHHHHHHHHHH
Q 000774 561 KQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKT---HGPLFYNTIYSLLSFGQ 637 (1293)
Q Consensus 561 ~~~~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~~~ 637 (1293)
++++++.|.++|++|++|+++.++++.+++++++.++.+++..+..+|+++|++...... .+...|..+|.++++++
T Consensus 792 ~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~ 871 (1381)
T KOG0054|consen 792 QEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVAS 871 (1381)
T ss_pred HHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHH
Confidence 677889999999999999999788888888888899999999999999999998865433 46778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 638 VLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFV 717 (1293)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~ 717 (1293)
.++.+++++++...+.++++.+|++++++++|+||.|||++|+|+|+|||++|++.+|..+|..+..++..++.+++.++
T Consensus 872 ~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~ 951 (1381)
T KOG0054|consen 872 SLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILV 951 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHH
Q 000774 718 LIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNI 797 (1293)
Q Consensus 718 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~ 797 (1293)
++.+..|+++++++|+.++++.++.+|.+++|+++|.++.+|+|+++|+.|++.|+.|||||+.+++|.+.+.+..|.+.
T Consensus 952 vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~ 1031 (1381)
T KOG0054|consen 952 VISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENS 1031 (1381)
T ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 798 RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS-AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNA 876 (1293)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 876 (1293)
+..+.....++|+++++++++.++++.++.+++..... .+ ++.+|+.++|+++++..++++++....+|+.++|
T Consensus 1032 ~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~-----~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~S 1106 (1381)
T KOG0054|consen 1032 RAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLIS-----PGLVGLSLSYALQLTGLLQWLVRQSSELENNMVS 1106 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999888876655 33 7899999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHH
Q 000774 877 VERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL 956 (1293)
Q Consensus 877 ~~Rl~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l 956 (1293)
+||+.+|.+.|+|.|...+...|++.||..|.|+|+|++.+|+++.|+||+||||+|+|||||||||++|||||||+++|
T Consensus 1107 VERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aL 1186 (1381)
T KOG0054|consen 1107 VERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILAL 1186 (1381)
T ss_pred hhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHH
Confidence 99999999999886655555558899999999999999999999889999999999999999999999999999999999
Q ss_pred hcCCCCCcceEEECCeecCCCChHHHhhhceEEccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcc
Q 000774 957 FRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 1036 (1293)
Q Consensus 957 ~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~ 1036 (1293)
+|+.+|.+|+|.|||+||.+++++++|++++++||||.||+||+|.||||+.+++|+++|+||++|+++++++++|.|||
T Consensus 1187 FRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld 1266 (1381)
T KOG0054|consen 1187 FRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLD 1266 (1381)
T ss_pred HHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEE
Q 000774 1037 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 1116 (1293)
Q Consensus 1037 ~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl 1116 (1293)
+.+.|+|.|+|-||||.+||||||+++++||+|||+|+++|++|+..|+++|++.+++||||.|+||++++.+||||+||
T Consensus 1267 ~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVl 1346 (1381)
T KOG0054|consen 1267 SEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVL 1346 (1381)
T ss_pred ceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEeeecChhhhhhcCCChHHHHHH
Q 000774 1117 DSGRVLEYDTPEELLSNEGSSFSKMVQ 1143 (1293)
Q Consensus 1117 ~~G~i~~~g~~~el~~~~~~~~~~l~~ 1143 (1293)
|+|+|+|+|+|++|++++++.|+++..
T Consensus 1347 d~G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1347 DAGRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred eCCeEeecCChHHHHhCCcchHHHHHH
Confidence 999999999999999998888875554
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-184 Score=1846.48 Aligned_cols=1287 Identities=87% Similarity=1.316 Sum_probs=1126.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH
Q 000774 6 PAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC 85 (1293)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~ 85 (1293)
+.+.++.++++++++.++..++..++.+...+++.++|..++..+|+|+++++...+.+.++|+++|++++|+++++.++
T Consensus 336 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~ 415 (1622)
T PLN03130 336 PAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQIC 415 (1622)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34667777666666666667777778888889999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 000774 86 QALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCY 165 (1293)
Q Consensus 86 ~~l~~~~~~~~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~ 165 (1293)
..++.+|..|+.+++++++++..++++++++++++++++|+..++.+++++.+++.++..++|.+.++|+++||++||+|
T Consensus 416 ~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~ 495 (1622)
T PLN03130 416 QQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCY 495 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999998888888888899999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000774 166 AWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLP 245 (1293)
Q Consensus 166 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~ 245 (1293)
+||+.+.+++++.|+++.+..++......+..++....+.++.+++|+++.+.++.++++.+|++++++..+..|+..+|
T Consensus 496 ~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~ 575 (1622)
T PLN03130 496 AWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLP 575 (1622)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888877777776666667778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCc
Q 000774 246 NMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 325 (1293)
Q Consensus 246 ~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsG 325 (1293)
..+..+.++.+|++||.++++.++....+.++.......|+++|++|+|++++++++|+|+||+|++|++++||||+|||
T Consensus 576 ~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSG 655 (1622)
T PLN03130 576 NLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEG 655 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCC
Confidence 99999999999999999999866542211111112234699999999997544578999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCceeecCcEEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCCCccccc
Q 000774 326 KTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 405 (1293)
Q Consensus 326 KSTLl~~l~g~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig 405 (1293)
||||+++|+|+++|++|+.+.+++.|+||+|+||+|++||+|||+||.++++++|+++++.|++.++++.+|+|++|.||
T Consensus 656 KSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IG 735 (1622)
T PLN03130 656 KTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIG 735 (1622)
T ss_pred HHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCccccccc
Confidence 99999999999999993367789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCC
Q 000774 406 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 485 (1293)
Q Consensus 406 ~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G 485 (1293)
|+|.+|||||||||+||||+|++|||||||||||+||+++++++++.+++...+++|+|+|||+++.++.||+|++|++|
T Consensus 736 e~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G 815 (1622)
T PLN03130 736 ERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEG 815 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999998887767899999999999999999999999999
Q ss_pred eEEEecChHHHhhccHHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccccccchhhhhh
Q 000774 486 MVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEER 565 (1293)
Q Consensus 486 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (1293)
+++++|+|+++++..+.|+.+.......++..+...+. ........+..+......+.........+..+.....++++
T Consensus 816 ~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 894 (1622)
T PLN03130 816 MIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEE-EDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEER 894 (1622)
T ss_pred EEEEeCCHHHHHhcchhHHHHHHhcccccccccccccc-cccccccccccccccccccccccccccccccchhhhhHHHH
Confidence 99999999999998888888876543221111100000 00000000000000000000000000001111223455677
Q ss_pred hcCcccHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 000774 566 ETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANS 645 (1293)
Q Consensus 566 ~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 645 (1293)
+.|.+++++|++|+++.++++.+++++++.++.+++....++|+++|.+...........|..+|.+++++..++.+++.
T Consensus 895 ~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~~~~ 974 (1622)
T PLN03130 895 ETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNS 974 (1622)
T ss_pred hcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999987777777777777888888889999999999886543333455677788888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 646 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTM 725 (1293)
Q Consensus 646 ~~~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1293)
++....+.+++.++|.+++++++++|+.||+++++|+++||+++|++.+|..++..+..++..++.+++.++++++++++
T Consensus 975 ~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~ 1054 (1622)
T PLN03130 975 YWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTI 1054 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 726 SLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 805 (1293)
Q Consensus 726 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1293)
.+++++|++++++.++.++.+..++.++.....++++++++.|+++|+.+||+|+.++++.+.+.+..+...+..+....
T Consensus 1055 ~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~ 1134 (1622)
T PLN03130 1055 SLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMS 1134 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777888888999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000774 806 ANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE 885 (1293)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~ 885 (1293)
.++|++.++++++.+++++++.+.+...+.......+.+.+|.+++|+..+..++.++.+....++..+.+++|+.++.+
T Consensus 1135 ~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~ 1214 (1622)
T PLN03130 1135 SNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYID 1214 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999998888777776666555444333344556788999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCCCCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcc
Q 000774 886 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 965 (1293)
Q Consensus 886 ~~~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G 965 (1293)
.|+|.+...+...+++.||..|.|+|+||+|+|+++.+++|+|+||+|+|||+||||||||||||||+++|+|+++|++|
T Consensus 1215 ~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G 1294 (1622)
T PLN03130 1215 LPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1294 (1622)
T ss_pred CCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCc
Confidence 88776543333344557888899999999999987656799999999999999999999999999999999999999999
Q ss_pred eEEECCeecCCCChHHHhhhceEEccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCC
Q 000774 966 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1045 (1293)
Q Consensus 966 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~ 1045 (1293)
+|.+||+|+++++++++|++|++|||||.+|+||||+||+++.+++|++++++++.++++++++++|.||||.++++|.+
T Consensus 1295 ~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~n 1374 (1622)
T PLN03130 1295 RILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGEN 1374 (1622)
T ss_pred eEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCC
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeec
Q 000774 1046 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1046 LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g 1125 (1293)
|||||||||||||||+++|+|||||||||+||++|++.|+++|++.++++|+|+||||++++.+||||+||++|+|+|.|
T Consensus 1375 LSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1375 FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhcCCChHHHHHHhhccchHHHHHHhhccCcchhhhhhhhhcccccccchhhchhHHHHHHHHHHhhccccchhh
Q 000774 1126 TPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQ 1205 (1293)
Q Consensus 1126 ~~~el~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1205 (1293)
+|+||+++.++.|++|++.++..+.+.+.....+.+.+.....+....+.+.++.+..+|+..++++++.++++++++++
T Consensus 1455 t~~eLl~~~~g~f~~L~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1534 (1622)
T PLN03130 1455 TPENLLSNEGSAFSKMVQSTGAANAQYLRSLVFGGDEDRLAREESKALDGQRKWLASSRWAAAAQFALAVSLTSSQNDLQ 1534 (1622)
T ss_pred CHHHHHhCCCCHHHHHHHHcChhhhHHHHHHHhccccccccccchhcccchhhHHHhhhcccchhhhhhhhccccccchh
Confidence 99999987778999999988876666665554222222222333445677888888889999999999999999999999
Q ss_pred hccccchhhHhhhchhhHHHHHHhhccCCchhhHhhhcccccchhhHHHHHHHHHhhhhhhhHhhhhccccCCCCCCCcc
Q 000774 1206 RLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERS 1285 (1293)
Q Consensus 1206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1285 (1293)
..++++..++++++|+++.++++|.+|+||+.+.+.+.++++++|+||+++|+|+||+++|+|+++||.||++|++++.+
T Consensus 1535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1614 (1622)
T PLN03130 1535 SLEIEDENSILEKTKDAVITLQSVLEGKHDKEIDESLNQRQVPRDGWWSSLYRMVEGLAVMSRLARNRMQQSDHNFEGKS 1614 (1622)
T ss_pred ccccCCchhhhhhhhhhHhHHHHhhccccccccchhhhhccCCcccchHHHHHHHhccccchhHHHHhhccCcccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccCCC
Q 000774 1286 IDWDHVEM 1293 (1293)
Q Consensus 1286 ~~~~~~~~ 1293 (1293)
+|||++||
T Consensus 1615 ~~~~~~~~ 1622 (1622)
T PLN03130 1615 IDWDNVEM 1622 (1622)
T ss_pred CChhhhcC
Confidence 99999997
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-163 Score=1646.60 Aligned_cols=1147 Identities=75% Similarity=1.189 Sum_probs=996.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHH
Q 000774 5 GPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQV 84 (1293)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~ 84 (1293)
.+.+.++.++++++++.++..++.+++.+...+++.+++..++..+|+|.++++...+++.++|+++|++++|+++++++
T Consensus 335 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~ 414 (1495)
T PLN03232 335 DPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQI 414 (1495)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 34466777788888888888888888888889999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000774 85 CQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKC 164 (1293)
Q Consensus 85 ~~~l~~~~~~~~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~ 164 (1293)
+..++.+|..|+.+++++++++..+++.++++++++++++|+..++.+++++..++.++..|++.+.++|.++||++||+
T Consensus 415 ~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~ 494 (1495)
T PLN03232 415 AEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKC 494 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999998888888888888888888888899999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 000774 165 YAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFML 244 (1293)
Q Consensus 165 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l 244 (1293)
|+||+.+.+++++.|+++.+..++......+..++....+.++.+++||++.+.++.++++.+|++++++..+..|+..+
T Consensus 495 ~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l 574 (1495)
T PLN03232 495 YAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNML 574 (1495)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888777777666666666677788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCC
Q 000774 245 PNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGE 324 (1293)
Q Consensus 245 ~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~Gs 324 (1293)
|..+..+.++.+|++||.++++.+++.....+........|+++|++|+|+++.++++|+|+||+|++||+++|+|||||
T Consensus 575 ~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGS 654 (1495)
T PLN03232 575 PNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGE 654 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCC
Confidence 99999999999999999999987654221111111223469999999999854457899999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCCCceeecCcEEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCCCcccc
Q 000774 325 GKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404 (1293)
Q Consensus 325 GKSTLl~~l~g~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~i 404 (1293)
|||||+++|+|+++|++|+...+++.|+||+|+||+|++||+|||+||+++++++++++++.|++.++++.+|+||+|.|
T Consensus 655 GKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~I 734 (1495)
T PLN03232 655 GKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEI 734 (1495)
T ss_pred cHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCcee
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeC
Q 000774 405 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 484 (1293)
Q Consensus 405 g~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~ 484 (1293)
||+|.+|||||||||+||||+|++|||||||||||+||+++++++++.+++...+++|+|+|||+++.++.||+|++|++
T Consensus 735 Ge~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~ 814 (1495)
T PLN03232 735 GERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSE 814 (1495)
T ss_pred cCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999888776789999999999999999999999999
Q ss_pred CeEEEecChHHHhhccHHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccccccchhhhh
Q 000774 485 GMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEE 564 (1293)
Q Consensus 485 G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (1293)
|+++++|+|+++.+.++.|++++..+...++..++....+..... .+.. .. +............+..+.....+++
T Consensus 815 G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~e~ 890 (1495)
T PLN03232 815 GMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKL--GPTV-TI-DVSERNLGSTKQGKRGRSVLVKQEE 890 (1495)
T ss_pred CEEEEecCHHHHHhcchhHHHHHHhcccccccccccccccccccc--cccc-cc-cccccccccccccccchhhhhhHHH
Confidence 999999999999998888988876544221110000000000000 0000 00 0000000000000111112345667
Q ss_pred hhcCcccHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHH
Q 000774 565 RETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLAN 644 (1293)
Q Consensus 565 ~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 644 (1293)
++.|.+++++|++|+++.++++.+++++++.++.+++.....+|+++|.+...........|..+|.+++++..++.+++
T Consensus 891 ~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~ 970 (1495)
T PLN03232 891 RETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTN 970 (1495)
T ss_pred HhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999998877777777777777888888889999999987543222334578888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 645 SYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVST 724 (1293)
Q Consensus 645 ~~~~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1293)
.+++...+.+++.++|++++++++++|+.||+++++|+++||+++|++.+|..++..+..++..++.+++.++++++..+
T Consensus 971 ~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~ 1050 (1495)
T PLN03232 971 SFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVST 1050 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888888888888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 725 MSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNM 804 (1293)
Q Consensus 725 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1293)
+.+++++|++++++..+.++.+..++.++....+++++++++.|+++|+.+||+|+.++++.+.+.+..+...+..+...
T Consensus 1051 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 1130 (1495)
T PLN03232 1051 ISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANT 1130 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778777777777888888889999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000774 805 GANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI 884 (1293)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~ 884 (1293)
....|+..++..++.+++++++.+.+...+..+....+.+.+|++++|+..+..++.++.+.+..++..+.+++|+.++.
T Consensus 1131 ~~~~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~ 1210 (1495)
T PLN03232 1131 SSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYI 1210 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899998888777666655555555443433333345667788889999999999999999999999999999999999
Q ss_pred cCCCCCccccCCCCCCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCc
Q 000774 885 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964 (1293)
Q Consensus 885 ~~~~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~ 964 (1293)
+.|+|.+...+...+++.||..|.|+|+||+|+|+++.+++|+|+||+|+|||++|||||||||||||+++|+|+++|++
T Consensus 1211 ~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~ 1290 (1495)
T PLN03232 1211 DLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK 1290 (1495)
T ss_pred cCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCC
Confidence 98877543222223445688888999999999997665679999999999999999999999999999999999999999
Q ss_pred ceEEECCeecCCCChHHHhhhceEEccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCC
Q 000774 965 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 1044 (1293)
Q Consensus 965 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~ 1044 (1293)
|+|.+||+|+++++++++|++|+||||+|.+|++|||+||+++++++|++++++++.++++++++++|+|+||.++++|.
T Consensus 1291 G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~ 1370 (1495)
T PLN03232 1291 GRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGE 1370 (1495)
T ss_pred ceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCC
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeee
Q 000774 1045 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1124 (1293)
Q Consensus 1045 ~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 1124 (1293)
+|||||||||||||||+++|+|||||||||+||++|++.|++.|++.++++|+|+||||++++.+||||+||++|+|+|.
T Consensus 1371 ~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~ 1450 (1495)
T PLN03232 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEY 1450 (1495)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred cChhhhhhcCCChHHHHHHhhccchHHHHHH
Q 000774 1125 DTPEELLSNEGSSFSKMVQSTGAANAQYLRS 1155 (1293)
Q Consensus 1125 g~~~el~~~~~~~~~~l~~~~~~~~~~~~~~ 1155 (1293)
|+|+||+++.++.|++|++.++..+.+.++.
T Consensus 1451 Gt~~eLl~~~~~~f~~l~~~~~~~~~~~~~~ 1481 (1495)
T PLN03232 1451 DSPQELLSRDTSAFFRMVHSTGPANAQYLSN 1481 (1495)
T ss_pred CCHHHHHhCCCCHHHHHHHHhChhhhHHHHH
Confidence 9999999887789999998877665554443
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-154 Score=1563.73 Aligned_cols=1132 Identities=41% Similarity=0.710 Sum_probs=975.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHH
Q 000774 5 GPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQV 84 (1293)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~ 84 (1293)
.+.+.+|.++++++++.++..++..+|.+...+++.+++..|+..+|+|+++++...+++.++|+++|++++|++++..+
T Consensus 352 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~ 431 (1522)
T TIGR00957 352 APDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDL 431 (1522)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHH
Confidence 34566788888888888888889889998899999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000774 85 CQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKC 164 (1293)
Q Consensus 85 ~~~l~~~~~~~~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~ 164 (1293)
...++.+|..|+.++++++++|...|+.++++++++++++|+..++.+++++.+++.++..|+|.+.++|+++||++||+
T Consensus 432 ~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~ 511 (1522)
T TIGR00957 432 ATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKL 511 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH
Q 000774 165 YAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLL--GGDLTPARAFTSLSLFAVLRFPLF 242 (1293)
Q Consensus 165 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~lt~~~~~~~l~~~~~l~~pl~ 242 (1293)
|+||+.+.+++++.|++|.+..++...+..+..+.....+.++.+++|++|.+. ++.++++.+|++++++..+..|+.
T Consensus 512 ~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~ 591 (1522)
T TIGR00957 512 YAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLN 591 (1522)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888877776666655556666667777777765 357899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccCC--CCCCC-CCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEE
Q 000774 243 MLPNMITQVVNANVSLKRMEEFLLAEEKILLP--NPPLT-SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIV 319 (1293)
Q Consensus 243 ~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~--~~~~~-~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lv 319 (1293)
.++..+..+.++.+|++||.++++.++..... ..... .....|+++|++|+|++ .++++|+|+||+|++||+++|+
T Consensus 592 ~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~l~~isl~i~~G~~v~Iv 670 (1522)
T TIGR00957 592 ILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWAR-DLPPTLNGITFSIPEGALVAVV 670 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCC-CCCceeeeeEEEEcCCCEEEEE
Confidence 99999999999999999999999866542111 01011 11236999999999974 3468999999999999999999
Q ss_pred cCCCCcHHHHHHHHhcCCCCCCCCceeecCcEEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCC
Q 000774 320 GGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGG 399 (1293)
Q Consensus 320 G~~GsGKSTLl~~l~g~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g 399 (1293)
||||||||||+++|+|+++|++| .+.+.+.|+||||+||+|++||+|||.||.+.++++++++++.|++.++++.+|+|
T Consensus 671 G~~GsGKSTLl~~l~g~~~~~~G-~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g 749 (1522)
T TIGR00957 671 GQVGCGKSSLLSALLAEMDKVEG-HVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSG 749 (1522)
T ss_pred CCCCCCHHHHHHHHhCCCccCCc-EEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCC
Confidence 99999999999999999999998 66778899999999999999999999999888888999999999999999999999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHh--hhcCCcEEEEEecCcchhhhCC
Q 000774 400 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRVLVTNQLHFLSQVD 477 (1293)
Q Consensus 400 ~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~--~~~~~~tvi~vtH~~~~l~~~d 477 (1293)
++|.+|++|.+|||||||||+||||+|++|+++|||||||+||+++++++++.+.+ ...+++|+|+|||+++.+..||
T Consensus 750 ~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D 829 (1522)
T TIGR00957 750 DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVD 829 (1522)
T ss_pred CCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCC
Confidence 99999999999999999999999999999999999999999999999999998874 3456899999999999999999
Q ss_pred eEEEEeCCeEEEecChHHHhhccHHHHHHHHHhchhhhhh--hhc-c---cCccccC---CC--------CCCCCCC---
Q 000774 478 RIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYV--EEK-E---DGETVDN---KT--------SKPAANG--- 537 (1293)
Q Consensus 478 ~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~-~---~~~~~~~---~~--------~~~~~~~--- 537 (1293)
+|++|++|++++.|+++++.+..+.|.++.......+... ++. . ..+.... .. .......
T Consensus 830 ~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1522)
T TIGR00957 830 VIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSA 909 (1522)
T ss_pred EEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhccc
Confidence 9999999999999999999988888887775432211100 000 0 0000000 00 0000000
Q ss_pred CCCCCCC---c--cc-c-cc-ccccccccchhhhhhhcCcccHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 000774 538 VDNDLPK---E--AS-D-TR-KTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWL 609 (1293)
Q Consensus 538 ~~~~~~~---~--~~-~-~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 609 (1293)
....... . .. . .. ..+........+++++.|.+++++|+.|+++.|. +.+++++++.++.+++....++|+
T Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~l 988 (1522)
T TIGR00957 910 SSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGL-FITFLSIFLFVCNHVSALASNYWL 988 (1522)
T ss_pred cccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 0 00 0 00 0000111233455667788999999999998764 444445555566777888899999
Q ss_pred hhhccCCCcC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHH
Q 000774 610 SYWTDQSSLK--THGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRF 687 (1293)
Q Consensus 610 ~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rl 687 (1293)
++|.+..... ......+..+|.+++++..++.++..++....+.+++.++|++++++++++|+.||+++++|+++||+
T Consensus 989 ~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~ 1068 (1522)
T TIGR00957 989 SLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRF 1068 (1522)
T ss_pred HHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHH
Confidence 9998754211 12234566688888888888888888999999999999999999999999999999999999999999
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Q 000774 688 AKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFG 767 (1293)
Q Consensus 688 s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1293)
++|++.+|..++..+..++..++.+++.++++++.+|+++++++|++++++.+..+|.+..++.++.....++++++++.
T Consensus 1069 s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~ 1148 (1522)
T TIGR00957 1069 SKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFN 1148 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999998888888888888888888888888888889999999999999999999999999
Q ss_pred HHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhHHHHH
Q 000774 768 EALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMG 847 (1293)
Q Consensus 768 e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 847 (1293)
|+++|+.+||+|+.++++.+.+.+..+...+..+.....+.|+..++++++.+++++++.+.+...+..+ .+.++
T Consensus 1149 E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~g~l~ 1223 (1522)
T TIGR00957 1149 ETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHSLS-----AGLVG 1223 (1522)
T ss_pred HHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----HHHHH
Confidence 9999999999999999999999999999999998888899999999998877666555555554444444 67788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEecCCCCCcee
Q 000774 848 LLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLH 927 (1293)
Q Consensus 848 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~ 927 (1293)
+++.|+..+..++..+.+.+..++..+.+++|+.++.+.++|.+...+...+++.||..|.|+|+||+|+|+++.+++|+
T Consensus 1224 ~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~ 1303 (1522)
T TIGR00957 1224 LSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLR 1303 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCccccc
Confidence 99999999999999999999999999999999999998877654222233345568888999999999999866557999
Q ss_pred eeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEEccccccccccHhhhcCCC
Q 000774 928 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF 1007 (1293)
Q Consensus 928 ~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~ 1007 (1293)
|+||+|+|||++|||||||||||||+++|+|+++|++|+|.+||+|+++++++++|++|++|||||.+|+||||+||+|+
T Consensus 1304 ~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~ 1383 (1522)
T TIGR00957 1304 HINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF 1383 (1522)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000774 1008 SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1087 (1293)
Q Consensus 1008 ~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~ 1087 (1293)
++++|++++++++.+++++++.++|.||||.++++|.+||||||||+||||||+++|+|||||||||+||++|++.|++.
T Consensus 1384 ~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~ 1463 (1522)
T TIGR00957 1384 SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQST 1463 (1522)
T ss_pred cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChHHHHHHhh
Q 000774 1088 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1145 (1293)
Q Consensus 1088 l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~l~~~~ 1145 (1293)
|++.++++|+|+||||++++.+||||+||++|+|+|.|+|+||+++ ++.|+++++..
T Consensus 1464 l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1464 IRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred HHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999986 57899888763
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-151 Score=1520.68 Aligned_cols=1132 Identities=34% Similarity=0.592 Sum_probs=960.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhc--CCChhHHHHHHHHHHHHHHHHHH
Q 000774 9 IGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARK--NFASGKITNLMTTDAEQLQQVCQ 86 (1293)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~--~~~~G~l~~~l~~Dv~~l~~~~~ 86 (1293)
.++.++++++++.++..++.+++.+...+.+.++|..|...+|+|+++++..... +.++|+++|++++|++++..++.
T Consensus 283 ~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~ 362 (1560)
T PTZ00243 283 RGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQ 362 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHH
Confidence 4667777788888899999999999999999999999999999999999887665 56899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 000774 87 ALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYA 166 (1293)
Q Consensus 87 ~l~~~~~~~~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~ 166 (1293)
.++.+|..|+.++++++++|..+|++++++++++++++|+..++.+++.+.+++.++..|+|.+.++|+++||++||+|+
T Consensus 363 ~~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~ 442 (1560)
T PTZ00243 363 YCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMA 442 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 167 WENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN 246 (1293)
Q Consensus 167 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~ 246 (1293)
||+.+.+++++.|++|++..++......+..++..+.+.++.+++|++|.+.++.++++.+|+++++++.+..|+..+|.
T Consensus 443 wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~ 522 (1560)
T PTZ00243 443 WEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPW 522 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888888888888888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccc-------C---------C--C--------------C---C--------------
Q 000774 247 MITQVVNANVSLKRMEEFLLAEEKIL-------L---------P--N--------------P---P-------------- 277 (1293)
Q Consensus 247 ~~~~~~~~~~s~~Ri~~~l~~~~~~~-------~---------~--~--------------~---~-------------- 277 (1293)
.+..+.++.+|++||.+||+.++... . . . + +
T Consensus 523 ~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (1560)
T PTZ00243 523 VFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRAL 602 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccch
Confidence 99999999999999999997654110 0 0 0 0 0
Q ss_pred -----------CCCCCCcEEEEeeEEEcCCC-------------------------------------CCCCceeceeEE
Q 000774 278 -----------LTSGLPAISIRNGYFSWDSK-------------------------------------AERPTLLNINLD 309 (1293)
Q Consensus 278 -----------~~~~~~~i~~~~~~~~y~~~-------------------------------------~~~~~l~~isl~ 309 (1293)
.....+.+.++|++|.++.. .++++|+|+||+
T Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~ 682 (1560)
T PTZ00243 603 RMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVS 682 (1560)
T ss_pred hhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEE
Confidence 00011246677777764310 135689999999
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCceeecCcEEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCC
Q 000774 310 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSL 389 (1293)
Q Consensus 310 i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l 389 (1293)
|++|++++|+||||||||||+++|+|+++|++| .+.+++.||||||+||+|++||+|||.|+.+.+.+++.++++.|++
T Consensus 683 i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G-~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l 761 (1560)
T PTZ00243 683 VPRGKLTVVLGATGSGKSTLLQSLLSQFEISEG-RVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQL 761 (1560)
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999 5567789999999999999999999999987777789999999999
Q ss_pred hhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecC
Q 000774 390 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ 469 (1293)
Q Consensus 390 ~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~ 469 (1293)
.++++.+|+|++|.+|++|.+|||||||||+|||||+.+|++||||||||+||+++.+++++.++....+|+|+|+|||+
T Consensus 762 ~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~ 841 (1560)
T PTZ00243 762 EADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQ 841 (1560)
T ss_pred HHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999998776555578999999999
Q ss_pred cchhhhCCeEEEEeCCeEEEecChHHHhhccHHHHHHHHHhchhhhhhhhcccCc--cccCCCCCCCC-CCC-CCCCCCc
Q 000774 470 LHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGE--TVDNKTSKPAA-NGV-DNDLPKE 545 (1293)
Q Consensus 470 ~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~-~~~~~~~ 545 (1293)
++.++.||+|++|++|++++.|+++++.+.+ .|..+........+..+.....+ ........... ... .......
T Consensus 842 ~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 920 (1560)
T PTZ00243 842 VHVVPRADYVVALGDGRVEFSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNA 920 (1560)
T ss_pred HHHHHhCCEEEEEECCEEEEecCHHHHHhCh-HHHHHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999998754 46655543211110000000000 00000000000 000 0000000
Q ss_pred cccc-cccccccccchhhhhhhcCcccHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCch
Q 000774 546 ASDT-RKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL 624 (1293)
Q Consensus 546 ~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 624 (1293)
.... .........+...+++..|.++|++|++|++..|++..++++++++++.+++....++|+++|.+.... ....
T Consensus 921 ~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~--~~~~ 998 (1560)
T PTZ00243 921 EGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFK--LSAA 998 (1560)
T ss_pred ccccccccccccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--CCcc
Confidence 0000 000011122344556677889999999999988877766666677777888888899999999864321 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHH
Q 000774 625 FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 704 (1293)
Q Consensus 625 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~ 704 (1293)
.|..+|.++.++..++.+++.+.......+.++++|++++++++++|+.||+++++|+++||+++|++.+|..++..+..
T Consensus 999 ~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~ 1078 (1560)
T PTZ00243 999 TYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLY 1078 (1560)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56677777777777777777777777788889999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHH
Q 000774 705 FMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 784 (1293)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~ 784 (1293)
++..++.+++.++++++..|+++++++|++++++.+..+|.+..++.++.....++++++++.|++.|+.+||+|+.++.
T Consensus 1079 ~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~ 1158 (1560)
T PTZ00243 1079 LLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHL 1158 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHH
Confidence 88888888888888888888877777777777777788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCcccchhhhHHHHHHHHHHHHHHHHHH
Q 000774 785 MADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVV----QNGSAENQEAFASTMGLLLSYALNITSLL 860 (1293)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 860 (1293)
+.+++.+..+...+..+.....+.|+..+.+++..+++.+++.+.+. ..+..+ .+.+++++.++..+..++
T Consensus 1159 ~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~g~l~~~l~~a~~l~~~l 1233 (1560)
T PTZ00243 1159 VMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQE-----IGLVSLSLTMAMQTTATL 1233 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----HHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888899999999888876654443333321 112222 567888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC-CCCCcccc-----------------------CCCCCC---CCCCCCccEEEEE
Q 000774 861 TAVLRLASLAENSLNAVERVGNYIEL-PSEAPLVI-----------------------ESNRPP---PGWPSSGSIKFED 913 (1293)
Q Consensus 861 ~~~~~~~~~~~~~~~a~~Rl~~~~~~-~~e~~~~~-----------------------~~~~~~---~~~~~~g~i~~~~ 913 (1293)
..+.+.+..++..+.+++|+.++.+. |+|+.... +...++ +.|+..|.|+|+|
T Consensus 1234 ~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~n 1313 (1560)
T PTZ00243 1234 NWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEG 1313 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEE
Confidence 99999999999999999999999863 33321000 001111 1234567899999
Q ss_pred EEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEEcccc
Q 000774 914 VVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP 993 (1293)
Q Consensus 914 v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 993 (1293)
|+|+|+++.+++|+||||+|+|||+||||||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||+|
T Consensus 1314 Vsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp 1393 (1560)
T PTZ00243 1314 VQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDP 1393 (1560)
T ss_pred EEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCC
Confidence 99999876567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC-CCEEEEeCC
Q 000774 994 VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR-SKILVLDEA 1072 (1293)
Q Consensus 994 ~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~-p~iLlLDEp 1072 (1293)
.||++|||+||+++.+.+|+++++|++.+++++++.++|.||||.++++|.+|||||||||||||||+++ |+|||||||
T Consensus 1394 ~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEA 1473 (1560)
T PTZ00243 1394 VLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEA 1473 (1560)
T ss_pred ccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 9999999999999888899999999999999999999999999999999999999999999999999995 899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChHHHHHHhhccch
Q 000774 1073 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 1149 (1293)
Q Consensus 1073 Ts~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~l~~~~~~~~ 1149 (1293)
||+||++|++.|++.|++.++++|+|+||||++++.+||+|+||++|+|+|.|+|+||+++.++.|+++++..+..+
T Consensus 1474 TSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~~~ 1550 (1560)
T PTZ00243 1474 TANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSE 1550 (1560)
T ss_pred CccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChhH
Confidence 99999999999999999998999999999999999999999999999999999999999877889999998765433
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-149 Score=1504.64 Aligned_cols=1128 Identities=29% Similarity=0.523 Sum_probs=957.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHHHH
Q 000774 8 WIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQA 87 (1293)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~~~ 87 (1293)
+.++.++++++++.++..++.+++.|...+.+.++|..+...+|+|+++++...+++.++|+++|++++|++++..++..
T Consensus 119 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~ 198 (1490)
T TIGR01271 119 EIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLAL 198 (1490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 56778888888888888899999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcc
Q 000774 88 LHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAW 167 (1293)
Q Consensus 88 l~~~~~~~~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~ 167 (1293)
++.+|..|+.++++++++|..+|++++++++++++++|+..++.+++.+.+++.++..|+|.+.++|+++||++||+|+|
T Consensus 199 ~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~ 278 (1490)
T TIGR01271 199 AHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCW 278 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HHHH
Q 000774 168 ENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF-MLPN 246 (1293)
Q Consensus 168 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~-~l~~ 246 (1293)
|+.+.+++++.|++|++..++...+..+...+..+.+.++.+++|++|.+.++ ++++.+|++++++..+..|+. .+|.
T Consensus 279 E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~ 357 (1490)
T TIGR01271 279 EEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPG 357 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888877776666667777777888888877654 789999999999999999985 7999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcEEEEeeEEEcCCC-----------------------------
Q 000774 247 MITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSK----------------------------- 297 (1293)
Q Consensus 247 ~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~----------------------------- 297 (1293)
.+..+.++.+|++||.+|+..++....... .....++++|++|.|+..
T Consensus 358 ~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~---~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1490)
T TIGR01271 358 AIQTWYDSLGAITKIQDFLCKEEYKTLEYN---LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNF 434 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccc---CCCCceEEecceEecCCcccccccccccccccccccccccccccccc
Confidence 999999999999999999987654311111 112359999999999531
Q ss_pred --CCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCceeecCcEEEEcCCccccCccHHHHHccCCCC
Q 000774 298 --AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 375 (1293)
Q Consensus 298 --~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~ 375 (1293)
..+++|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.+.+.|+||+|+||+|++||+|||.||.++
T Consensus 435 s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G-~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~ 513 (1490)
T TIGR01271 435 SLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEG-KIKHSGRISFSPQTSWIMPGTIKDNIIFGLSY 513 (1490)
T ss_pred ccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEEEEeCCCccCCccHHHHHHhcccc
Confidence 024689999999999999999999999999999999999999999 66688899999999999999999999999888
Q ss_pred CHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHh
Q 000774 376 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 455 (1293)
Q Consensus 376 ~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~ 455 (1293)
+++++.++++.|++.++++.+|+|+.|.+|++|.+|||||||||+||||+|++|++||||||||+||+++++++++.++.
T Consensus 514 ~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~ 593 (1490)
T TIGR01271 514 DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLC 593 (1490)
T ss_pred chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred hhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHhhccHHHHHHHHHhchhhh-------------------h
Q 000774 456 GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEE-------------------Y 516 (1293)
Q Consensus 456 ~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~-------------------~ 516 (1293)
...+++|+|+|||+++.+..||+|++|++|++++.|+++++.+..+.|...........+ .
T Consensus 594 ~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1490)
T TIGR01271 594 KLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSID 673 (1490)
T ss_pred HHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcChHHHHHHhccccccccccccccccccccccccccc
Confidence 666799999999999999999999999999999999999998876666555531100000 0
Q ss_pred --------hhhc-c-----cCcccc--------C-----------------------C--CCCCCCCC---------CCC
Q 000774 517 --------VEEK-E-----DGETVD--------N-----------------------K--TSKPAANG---------VDN 540 (1293)
Q Consensus 517 --------~~~~-~-----~~~~~~--------~-----------------------~--~~~~~~~~---------~~~ 540 (1293)
.++. . ..+... + . ...+.... ...
T Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (1490)
T TIGR01271 674 GDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEE 753 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhccccccccccccccccccc
Confidence 0000 0 000000 0 0 00000000 000
Q ss_pred CCCC-----------------------cc--------c---c--------c------------cc-ccc----------c
Q 000774 541 DLPK-----------------------EA--------S---D--------T------------RK-TKE----------G 555 (1293)
Q Consensus 541 ~~~~-----------------------~~--------~---~--------~------------~~-~~~----------~ 555 (1293)
..+. .. . . . +. ... .
T Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (1490)
T TIGR01271 754 SLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINE 833 (1490)
T ss_pred ccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 0000 00 0 0 0 00 000 0
Q ss_pred ---cccchhhhhhhcCcccHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCC-------Cc-C-----
Q 000774 556 ---KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQS-------SL-K----- 619 (1293)
Q Consensus 556 ---~~~~~~~~~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-------~~-~----- 619 (1293)
......++++..|.++|++|++|++..|+++.+++++++.++.+++.....+|+..|.... .. .
T Consensus 834 ~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~ 913 (1490)
T TIGR01271 834 EDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDV 913 (1490)
T ss_pred hhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccc
Confidence 0012234556678899999999999877666666666677778888999999999886421 00 0
Q ss_pred ------CCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchh
Q 000774 620 ------THGPLFY-NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLG 692 (1293)
Q Consensus 620 ------~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~ 692 (1293)
.....+| .++|..+.++..++.+++.+++...+.+++.++|.+++++++++|+.||+++++|+++||+++|++
T Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~ 993 (1490)
T TIGR01271 914 QKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMA 993 (1490)
T ss_pred cccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHH
Confidence 0011122 344555555566777888999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHcc
Q 000774 693 DIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNG 772 (1293)
Q Consensus 693 ~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g 772 (1293)
.+|..++..+..++..++.+++.++++++.+|+++++++|++++++.+..+|.+..++.++.....++|+++++.|+++|
T Consensus 994 ~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~G 1073 (1490)
T TIGR01271 994 IIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKG 1073 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC
Confidence 99999999999999999999999999999999888888888888888888898899999999999999999999999999
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHH
Q 000774 773 LSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSY 852 (1293)
Q Consensus 773 ~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 852 (1293)
+.+||+|+.++++.+++.+..+...+..+......+|+..++.+++.+++..++.+.+.. ...+ .+.+|.++++
T Consensus 1074 l~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-~~~~-----~g~~g~~l~~ 1147 (1490)
T TIGR01271 1074 LWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-NQDG-----EGEVGIILTL 1147 (1490)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCC-----ccHHHHHHHH
Confidence 999999999999999999999988888888888889999988887655444333332221 1122 3457888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccC--------------CCCCCCCCCCCccEEEEEEEEEe
Q 000774 853 ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE--------------SNRPPPGWPSSGSIKFEDVVLRY 918 (1293)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~--------------~~~~~~~~~~~g~i~~~~v~~~y 918 (1293)
+..+...+.++.+.+..++..+.+++|+.++.+.|+|.+...+ ...+++.||..|.|+|+||+|+|
T Consensus 1148 ~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y 1227 (1490)
T TIGR01271 1148 AMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKY 1227 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEe
Confidence 8888889999999999999999999999999988776432111 11234468888999999999999
Q ss_pred cCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEEccccccccc
Q 000774 919 RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG 998 (1293)
Q Consensus 919 ~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 998 (1293)
+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++ ++|+|.+||+|+++++++++|++|+||||+|.+|+|
T Consensus 1228 ~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G 1306 (1490)
T TIGR01271 1228 TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG 1306 (1490)
T ss_pred CCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc
Confidence 8766789999999999999999999999999999999999997 799999999999999999999999999999999999
Q ss_pred cHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 000774 999 TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1078 (1293)
Q Consensus 999 ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~ 1078 (1293)
|||+||+++.+.+|++++++++.+++++++.++|.|||+.+++.|.+|||||||||||||||+++|+|||||||||+||+
T Consensus 1307 TIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~ 1386 (1490)
T TIGR01271 1307 TFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDP 1386 (1490)
T ss_pred CHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCH
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChHHHHHHhhccc
Q 000774 1079 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAA 1148 (1293)
Q Consensus 1079 ~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~l~~~~~~~ 1148 (1293)
+|++.|++.|++.++++|||+||||++++.+||||+||++|+|+|.|+|++|++ .++.|+++++..+..
T Consensus 1387 ~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~-~~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1387 VTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN-ETSLFKQAMSAADRL 1455 (1490)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc-CCcHHHHHHHHhChh
Confidence 999999999999999999999999999999999999999999999999999996 478899999876544
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-147 Score=1366.08 Aligned_cols=1094 Identities=22% Similarity=0.296 Sum_probs=853.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000774 37 RVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRIIISLVLLYNELGVASLL 115 (1293)
Q Consensus 37 ~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~~~~~~~i~~~~~l~~~~~~~~l~ 115 (1293)
+.+.|.-..+|...++.+++.+..+++...+|++.+++++|++.+++.+ ..+..++.....++.++++.|+..|.++++
T Consensus 97 ~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Ltlv 176 (1228)
T KOG0055|consen 97 RTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTLV 176 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666677788889999999999999999999999999976 455566666667777888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 116 GALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAAC 195 (1293)
Q Consensus 116 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1293)
++.+.|++......+.+.+.+...+.++...+..+...|.+.++|||.+|+.|+...+++.+.-+...+...+......+
T Consensus 177 ~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~ 256 (1228)
T KOG0055|consen 177 MLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGL 256 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888899899999999999999999999999999999999999999999999888888877777766666
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Q 000774 196 NSFILNSIP--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILL 273 (1293)
Q Consensus 196 ~~~~~~~~~--~~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~ 273 (1293)
...+..++. .....+|||..++..+..++|.+++.+..+......+.+....+..+..+++|+.+|.+.++..+....
T Consensus 257 ~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~ 336 (1228)
T KOG0055|consen 257 GLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDP 336 (1228)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCc
Confidence 655544433 335567888888888889999998887666666667888889999999999999999999987665422
Q ss_pred CC--C-CCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCce-----
Q 000774 274 PN--P-PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA----- 345 (1293)
Q Consensus 274 ~~--~-~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~----- 345 (1293)
.. . ........|+|+||+|+||.+++.++|+|+||+|++|+.+||||||||||||++++|.|+|+|++|.+.
T Consensus 337 ~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~d 416 (1228)
T KOG0055|consen 337 YSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGED 416 (1228)
T ss_pred ccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCcc
Confidence 21 1 122234579999999999988888999999999999999999999999999999999999999998432
Q ss_pred -------eecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHH
Q 000774 346 -------VIRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 417 (1293)
Q Consensus 346 -------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkq 417 (1293)
.+|++||.|+|+|.||++||+|||.+|++ .+.+++.++++.++.++++..+|+|++|.+||+|.+|||||||
T Consensus 417 i~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQ 496 (1228)
T KOG0055|consen 417 IRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQ 496 (1228)
T ss_pred chhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHH
Confidence 24668999999999999999999999985 5789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHh
Q 000774 418 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 497 (1293)
Q Consensus 418 RialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 497 (1293)
||||||||++||+|||||||||+||+++++.+.+ +++...+|+|.|+||||++++++||+|++|++|+|++.|+|+||+
T Consensus 497 RIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~-ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi 575 (1228)
T KOG0055|consen 497 RIAIARALVRNPKILLLDEATSALDAESERVVQE-ALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELI 575 (1228)
T ss_pred HHHHHHHHHhCCCEEEecCcccccCHHHHHHHHH-HHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999998877754 677788999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHhchhhhhhhhcccCccc---cCCC-CCCCCCCCCC-CCCCccccccccccccccchhhhhhhcCcccH
Q 000774 498 NNGELFQKLMENAGKMEEYVEEKEDGETV---DNKT-SKPAANGVDN-DLPKEASDTRKTKEGKSVLIKQEERETGVVSF 572 (1293)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 572 (1293)
+.+|.|.++++.+........+..+.+.. ..+. .+........ .............+........ +....++
T Consensus 576 ~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~---~~~~~s~ 652 (1228)
T KOG0055|consen 576 ALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSE---EDEKVSF 652 (1228)
T ss_pred hccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCcccccccccccccccccccccc---ccccccH
Confidence 99999999998774333211100000000 0000 0000000000 0000000000000000000000 0123444
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCc-----CCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 573 KVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSL-----KTHGPLFYNTIYSLLSFGQVLVTLANSYW 647 (1293)
Q Consensus 573 ~~~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 647 (1293)
..+.++.++ -|+++++..++.++.........+.++........ .......|..+|..+++...++.+++.++
T Consensus 653 ~~i~k~~~p--e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~ 730 (1228)
T KOG0055|consen 653 WRIFKLNKP--EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYF 730 (1228)
T ss_pred HHHHHhccc--hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433 35555555665555544444433333322211111 11122348889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccc--ccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 648 LIISSLYAAKRLHDAMLHSILRAPMVFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTM 725 (1293)
Q Consensus 648 ~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~--~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1293)
+.+.+.+...++|..+|++++++++.|||. |. |.+.+|+.+|...++..+...+..++..+..++..+++.++.+|.
T Consensus 731 f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~ 809 (1228)
T KOG0055|consen 731 FGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWR 809 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999995 66 999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 726 SLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 805 (1293)
Q Consensus 726 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1293)
+.++.+.+.++++.....+.+.....................|++.+++||++|+.|+++.+.+.+..+...+.......
T Consensus 810 lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~ 889 (1228)
T KOG0055|consen 810 LALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGL 889 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87665444444333333333222222222333333445677899999999999999999999999998887777665544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000774 806 ANRWLAIRLEIVGGLMIWLTATFA--VVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNY 883 (1293)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~ 883 (1293)
.........+.+..++..+..++. ++..+..+....+-..+.+. +. ...+.......+.+..+..|+.++.++
T Consensus 890 i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~--~t---a~~~~~~~s~~Pd~~ka~~Aa~~iF~i 964 (1228)
T KOG0055|consen 890 ISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALS--FT---AMALGQASSYAPDISKAKIAAGSIFEI 964 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHH--HH---HHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 333222222222222222222221 23344444322222222111 11 123344455566677888899999999
Q ss_pred hcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEecCCC-CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC
Q 000774 884 IELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 962 (1293)
Q Consensus 884 ~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~-~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p 962 (1293)
++.++..+...+. .....+..|+|+++||+|+||.++ .++|+|+||+|++|+.+||||||||||||++.+|.|+|+|
T Consensus 965 ~dr~~~i~~~~~~--~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp 1042 (1228)
T KOG0055|consen 965 LDRKPTIDPDSTS--GGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP 1042 (1228)
T ss_pred hcCCCCCCCCCCC--CCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 9876532211111 111224578999999999997432 3689999999999999999999999999999999999999
Q ss_pred CcceEEECCeecCCCChHHHhhhceEEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhc
Q 000774 963 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 1041 (1293)
Q Consensus 963 ~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~ 1041 (1293)
++|.|.|||.|+++++++++|++||+|.|+|.||++||||||.++. +.+++|+.+|++.+++++||..||+||||.+++
T Consensus 1043 ~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGe 1122 (1228)
T KOG0055|consen 1043 DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGE 1122 (1228)
T ss_pred CCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCc
Confidence 9999999999999999999999999999999999999999999773 468999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeE
Q 000774 1042 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 1121 (1293)
Q Consensus 1042 ~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i 1121 (1293)
+|.+||||||||+|||||++|||+||||||+||+||.++++.++++|++...++|+|+|+||++++++||.|+|+++|+|
T Consensus 1123 rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~V 1202 (1228)
T KOG0055|consen 1123 RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKV 1202 (1228)
T ss_pred ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecChhhhhhcCCChHHHHHHhh
Q 000774 1122 LEYDTPEELLSNEGSSFSKMVQST 1145 (1293)
Q Consensus 1122 ~~~g~~~el~~~~~~~~~~l~~~~ 1145 (1293)
+|.|+|++|++ .++.|.+|++.+
T Consensus 1203 vE~GtH~~L~~-~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1203 VEQGTHDELLA-KRGIYFRLVQLQ 1225 (1228)
T ss_pred EecccHHHHHh-CCCchHHHhhhc
Confidence 99999999998 578899998764
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-133 Score=1342.32 Aligned_cols=1121 Identities=18% Similarity=0.249 Sum_probs=843.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000774 17 IFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAP 95 (1293)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~~~~ 95 (1293)
++++.++..++.+...+...+++.++...+|..+|+++++++..+++..++|++.+++++|++.++..+ ..+..++..+
T Consensus 103 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~ 182 (1466)
T PTZ00265 103 LVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYA 182 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566666777788999999999999999999999999999999999999999999999865 5677777888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH
Q 000774 96 FRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKV 175 (1293)
Q Consensus 96 ~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~ 175 (1293)
+.++++++++++..|.++++.++++++++.+..++.+++++..++..+..++..+.+.|.++|+++||+|+.|+.+.+++
T Consensus 183 ~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f 262 (1466)
T PTZ00265 183 SAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKF 262 (1466)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHH
Confidence 88888889999999999999999888888888888888888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHH
Q 000774 176 QNVRNDELSWFRKAQFLAACNSFILNSIPV--LVTVVSFGMFTLLGG--------DLTPARAFTSLSLFAVLRFPLFMLP 245 (1293)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~--------~lt~~~~~~~l~~~~~l~~pl~~l~ 245 (1293)
.+..+...+...+.....++...+..++.. .+.++++|++++..| .++++.+++++........++..+.
T Consensus 263 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~ 342 (1466)
T PTZ00265 263 NLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIIL 342 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 887777777666666655554444433322 345567788887764 5788888877655544455666677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccCCCC-CCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCC
Q 000774 246 NMITQVVNANVSLKRMEEFLLAEEKILLPNP-PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGE 324 (1293)
Q Consensus 246 ~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~-~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~Gs 324 (1293)
..+..++.+.+|++||.++++.+++...... ...+....|+++||+|+|+.+.++++|+|+||+|++||++||||||||
T Consensus 343 ~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGs 422 (1466)
T PTZ00265 343 PNITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGC 422 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCC
Confidence 7888999999999999999987654221111 111112369999999999854345799999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCCCcee-------------ecCcEEEEcCCccccCccHHHHHccCCC-----------------
Q 000774 325 GKTSLISAMLGELPPVSDASAV-------------IRGTVAYVPQVSWIFNATVRDNILFGSA----------------- 374 (1293)
Q Consensus 325 GKSTLl~~l~g~~~~~~g~~~~-------------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----------------- 374 (1293)
|||||+++|+|+++|++|.... +|+.||||+|+|.+|++||+|||.+|..
T Consensus 423 GKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~ 502 (1466)
T PTZ00265 423 GKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGN 502 (1466)
T ss_pred CHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccc
Confidence 9999999999999999985322 2346999999999999999999998731
Q ss_pred -----------------------------------------CCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCCh
Q 000774 375 -----------------------------------------FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 413 (1293)
Q Consensus 375 -----------------------------------------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 413 (1293)
.+++++.++++.+++++++..+|+|++|.+|++|.+|||
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSG 582 (1466)
T PTZ00265 503 DSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSG 582 (1466)
T ss_pred cccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCH
Confidence 234678889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEeCC-------
Q 000774 414 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEG------- 485 (1293)
Q Consensus 414 GqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G------- 485 (1293)
||||||+|||||+++|+|||||||||+||+++++.+.+.+.+... +|+|+|+||||+++++.||+|++|++|
T Consensus 583 GQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~ 662 (1466)
T PTZ00265 583 GQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVD 662 (1466)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccc
Confidence 999999999999999999999999999999999999876654432 589999999999999999999999986
Q ss_pred ----------------------------------------eEEEecChHHHhh-ccHHHHHHHHHhchhhhhhh-hcccC
Q 000774 486 ----------------------------------------MVKEEGTFEDLSN-NGELFQKLMENAGKMEEYVE-EKEDG 523 (1293)
Q Consensus 486 ----------------------------------------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~-~~~~~ 523 (1293)
+|+++|+|+||++ ..+.|..++..+........ ...+.
T Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~ 742 (1466)
T PTZ00265 663 VDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDK 742 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccc
Confidence 5999999999998 58999999876543221110 00000
Q ss_pred cc--ccCC-CCCC-CC--CCCCCCC-CCc-----cccc-c--cc-cc--c--cccchhhh-hh-hcCcccHHHHHHHHHH
Q 000774 524 ET--VDNK-TSKP-AA--NGVDNDL-PKE-----ASDT-R--KT-KE--G--KSVLIKQE-ER-ETGVVSFKVLSRYKDA 581 (1293)
Q Consensus 524 ~~--~~~~-~~~~-~~--~~~~~~~-~~~-----~~~~-~--~~-~~--~--~~~~~~~~-~~-~~g~~~~~~~~~y~~~ 581 (1293)
.. .... .... .. ....... ... .... . .. .+ . +.....+. .+ ......+..+++++..
T Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1466)
T PTZ00265 743 DSDMKSSAYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFS 822 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHH
Confidence 00 0000 0000 00 0000000 000 0000 0 00 00 0 00000000 00 0000112222333322
Q ss_pred hchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 582 LGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLK---THGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKR 658 (1293)
Q Consensus 582 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1293)
. .+.+++.+++.++..++....++.++.+++..... ......+..++++++++..++.++..++....+.+...+
T Consensus 823 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~ 900 (1466)
T PTZ00265 823 Y--KKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKT 900 (1466)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12244445555566666666677776665532211 011224566667777888888999999999999999999
Q ss_pred HHHHHHHHHHcCCcccccc--ccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 659 LHDAMLHSILRAPMVFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 736 (1293)
Q Consensus 659 l~~~~~~~ll~~p~~ff~~--~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 736 (1293)
+|.++|++++++|+.||++ +++|++++|+++|++.++..+...+..++..++.+++.++++++++|.+.++++|++++
T Consensus 901 lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~ 980 (1466)
T PTZ00265 901 MKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFI 980 (1466)
T ss_pred HHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986 88999999999999999999888888888888888888888888888877766554433
Q ss_pred HHHHHHHHHHH--HHHHHHH-------------HHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 000774 737 FYAAYLYYQST--AREVKRL-------------DSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTL 801 (1293)
Q Consensus 737 ~~~~~~~~~~~--~~~~~~~-------------~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~ 801 (1293)
+...+....+. .++.++. ..+..+.....+.|+++|+++||+|+.++++.+++.+..+...+...
T Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~ 1060 (1466)
T PTZ00265 981 FMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQK 1060 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 32222111111 1111111 11223445778899999999999999999999999988887766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 802 VNMGANRWLAIRLEIVGGLMIWLTATF--AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVER 879 (1293)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R 879 (1293)
.......+.....+++..+...++.++ ..+..+..+. +.+..++.+......++..+......++....+.+|
T Consensus 1061 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~-----g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~r 1135 (1466)
T PTZ00265 1061 RKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILV-----DDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEK 1135 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544433333333333322222221111 1223444442 221111112222223345566777888899999999
Q ss_pred HhhhhcCCCCCccccCCCCCC-CCCCCCccEEEEEEEEEecCC-CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHh
Q 000774 880 VGNYIELPSEAPLVIESNRPP-PGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 957 (1293)
Q Consensus 880 l~~~~~~~~e~~~~~~~~~~~-~~~~~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~ 957 (1293)
+.++++.+++.+......... ...+..+.|+|+||+|+|+++ ..++|+|+||+|+||+++|||||||||||||+++|+
T Consensus 1136 i~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~ 1215 (1466)
T PTZ00265 1136 YYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLM 1215 (1466)
T ss_pred HHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999998654321111111100 011234679999999999743 237999999999999999999999999999999999
Q ss_pred cCCCC------------------------------------------------------CcceEEECCeecCCCChHHHh
Q 000774 958 RIVEL------------------------------------------------------ERGRILIDGFDIAKFGLMDLR 983 (1293)
Q Consensus 958 g~~~p------------------------------------------------------~~G~I~i~g~~i~~~~~~~~r 983 (1293)
|+|+| ++|+|++||+|+++++..++|
T Consensus 1216 r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR 1295 (1466)
T PTZ00265 1216 RFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLR 1295 (1466)
T ss_pred HhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHH
Confidence 99999 699999999999999999999
Q ss_pred hhceEEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 984 KILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 984 ~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
++||||||+|.||++||||||.++. +.+++++++|++.+++++||.++|+||||.++++|.+|||||||||||||||++
T Consensus 1296 ~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr 1375 (1466)
T PTZ00265 1296 NLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLR 1375 (1466)
T ss_pred hhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999874 478999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhccCEEEEEeC----CeEe-eecChhhhhhcCC
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDS----GRVL-EYDTPEELLSNEG 1135 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~----G~i~-~~g~~~el~~~~~ 1135 (1293)
+|+|||||||||+||+++++.|+++|++.. +++|+|+||||+++++.||+|+||++ |+++ |.|+|+||+++.+
T Consensus 1376 ~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~ 1455 (1466)
T PTZ00265 1376 EPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQD 1455 (1466)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCC
Confidence 999999999999999999999999999974 68999999999999999999999999 9955 8999999997557
Q ss_pred ChHHHHHHh
Q 000774 1136 SSFSKMVQS 1144 (1293)
Q Consensus 1136 ~~~~~l~~~ 1144 (1293)
+.|+++++.
T Consensus 1456 g~Y~~l~~~ 1464 (1466)
T PTZ00265 1456 GVYKKYVKL 1464 (1466)
T ss_pred ChHHHHHhh
Confidence 889988764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-83 Score=754.94 Aligned_cols=552 Identities=26% Similarity=0.371 Sum_probs=475.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCc-CCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 585 LWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSL-KTHGP--LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 661 (1293)
Q Consensus 585 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 661 (1293)
|+.+...++++++.....+..|.+++..+|.... ..... .....++.++.++..+++.++.+++...+.++..++|.
T Consensus 146 ~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~ 225 (716)
T KOG0058|consen 146 WKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRT 225 (716)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777777788888888777665443 11111 12344566677888999999999999999999999999
Q ss_pred HHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 662 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 741 (1293)
Q Consensus 662 ~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 741 (1293)
.+|++++++.+.|||.+.+|++++|++.|...+.+.++..++..+.+..+.++.+.++++.+|.+..+.+..++++..+.
T Consensus 226 ~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~ 305 (716)
T KOG0058|consen 226 DLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVA 305 (716)
T ss_pred HHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998887777777777777
Q ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 742 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 821 (1293)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1293)
++|.+..+++.+..+.+-+..++...|.+.+++|+|+|..|.+..+++.+..+...+...........+.....+...+.
T Consensus 306 ~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~ 385 (716)
T KOG0058|consen 306 KIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLA 385 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHH
Confidence 77877777777777777788888999999999999999999999999999988888877666555544444444444443
Q ss_pred HHHHHHHH--HHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCC
Q 000774 822 IWLTATFA--VVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP 899 (1293)
Q Consensus 822 ~~~~~~~~--~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~ 899 (1293)
...+.++. ++..+..+ .+.+..++.|...+...+..+...+..+.+...|.+|+.++++.++.-+.. ...
T Consensus 386 ~~siL~~Gg~Lv~~g~mt-----~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~---G~~ 457 (716)
T KOG0058|consen 386 VLSILFYGGHLVLTGSLT-----SGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT---GTL 457 (716)
T ss_pred HHHHHHhccchhhcCccc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC---Ccc
Confidence 33333332 23344444 556666777888888899999999999999999999999999876653321 111
Q ss_pred CCCCCCCccEEEEEEEEEecCC-CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCC
Q 000774 900 PPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG 978 (1293)
Q Consensus 900 ~~~~~~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~ 978 (1293)
.+. ...|.|+|+||+|+|+.+ ..++|+|+||+|+|||+||+|||||+||||++++|.++|+|++|+|.+||+||++++
T Consensus 458 ~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~ 536 (716)
T KOG0058|consen 458 APD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDIN 536 (716)
T ss_pred ccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcC
Confidence 111 357889999999999754 236999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhceEEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 000774 979 LMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1057 (1293)
Q Consensus 979 ~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 1057 (1293)
+..+|++||+|.|+|.||++||+|||.+.. +.+++++..|++.+++++||..+|+||||.++|+|.+||||||||+|||
T Consensus 537 ~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIA 616 (716)
T KOG0058|consen 537 HKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIA 616 (716)
T ss_pred HHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHH
Confidence 999999999999999999999999998654 5689999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCCh
Q 000774 1058 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSS 1137 (1293)
Q Consensus 1058 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~ 1137 (1293)
|||++||+||||||+||+||.++|..++++|.+..+++|||+|+||++++++||+|+|+++|+++|.|+|+||+++.++.
T Consensus 617 RALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gl 696 (716)
T KOG0058|consen 617 RALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGL 696 (716)
T ss_pred HHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHHHhh
Q 000774 1138 FSKMVQST 1145 (1293)
Q Consensus 1138 ~~~l~~~~ 1145 (1293)
|+++++.+
T Consensus 697 y~~Lv~~q 704 (716)
T KOG0058|consen 697 YAKLVQRQ 704 (716)
T ss_pred HHHHHHHh
Confidence 99998764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-77 Score=735.17 Aligned_cols=550 Identities=28% Similarity=0.401 Sum_probs=469.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 585 LWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF--YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDA 662 (1293)
Q Consensus 585 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 662 (1293)
+..+.-+++..++.+.+.++.|.+....+|........... ....+.++++...++.+++.+++.+.+.+....+-.+
T Consensus 153 ~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~ 232 (709)
T COG2274 153 RRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGR 232 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34455666777788888899999999888887654443332 3344555677788999999999999999999999999
Q ss_pred HHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 663 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYL 742 (1293)
Q Consensus 663 ~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 742 (1293)
+++|++++|+.||+++++|++++|+ +|++.|.+++...+...+..+.+.++.++++++++|.+.++.+..++++..+..
T Consensus 233 ~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~ 311 (709)
T COG2274 233 FFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITL 311 (709)
T ss_pred HHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 679999999998888888888889999999999999988887777776666666
Q ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 743 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI 822 (1293)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1293)
.+.+..++..+......+...+.+.|++.|+.++|+.+.|.++..++++...+..+..+.......+......++..+..
T Consensus 312 ~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 391 (709)
T COG2274 312 IFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSS 391 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555556666777889999999999999999999999999988888888877777666666655555544433
Q ss_pred HHHHHHHH--HhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCC
Q 000774 823 WLTATFAV--VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 900 (1293)
Q Consensus 823 ~~~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~ 900 (1293)
+++.++.+ +..+..+ .+.+..+.+...++..++..+.+.+..++....+.+|+.++++.|+|.+... .+.
T Consensus 392 v~iL~~G~~lVl~~~lT-----lG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~---~~~ 463 (709)
T COG2274 392 VLILWFGAILVLEGELT-----LGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK---TLI 463 (709)
T ss_pred HHHHHHHHHHHhcCCcc-----hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc---ccc
Confidence 33333322 2233333 3344444455567888899999999999999999999999999988753211 122
Q ss_pred CCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChH
Q 000774 901 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 980 (1293)
Q Consensus 901 ~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~ 980 (1293)
..++..|.|+++||+|+|+++.+++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||.|++++++.
T Consensus 464 ~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~ 543 (709)
T COG2274 464 HLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLA 543 (709)
T ss_pred cccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHH
Confidence 33456789999999999998777899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhceEEccccccccccHhhhcCCCCC-CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1059 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~-~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 1059 (1293)
++|++|||||||+.+|+|||+||+.+.++ .+++++++|++.+++++++.++|.||+|.++|+|.+|||||||||+||||
T Consensus 544 ~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARa 623 (709)
T COG2274 544 SLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARA 623 (709)
T ss_pred HHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999997765 46799999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChHH
Q 000774 1060 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1139 (1293)
Q Consensus 1060 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1139 (1293)
|+++|+|||||||||+||++|++.|.+.|.+...++|+|+||||++++++||||+||++|+|+++|+|+|+++. ++.|.
T Consensus 624 Ll~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~ 702 (709)
T COG2274 624 LLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYA 702 (709)
T ss_pred hccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHH
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999987 77888
Q ss_pred HHHHh
Q 000774 1140 KMVQS 1144 (1293)
Q Consensus 1140 ~l~~~ 1144 (1293)
++++.
T Consensus 703 ~l~~~ 707 (709)
T COG2274 703 RLYQQ 707 (709)
T ss_pred HHHhc
Confidence 77754
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-77 Score=706.53 Aligned_cols=497 Identities=23% Similarity=0.310 Sum_probs=445.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000774 14 AFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQV-CQALHTLW 92 (1293)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~-~~~l~~~~ 92 (1293)
+.++.+..+++.++.....+.....+.++..++|..+|+++++....+|+++.+||+++|++.|+..+.+. ...+...+
T Consensus 191 ~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~l 270 (716)
T KOG0058|consen 191 CTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGL 270 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 44555667777788777778788899999999999999999999999999999999999999999999884 46777888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHH
Q 000774 93 SAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQ 172 (1293)
Q Consensus 93 ~~~~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~ 172 (1293)
-..++.++++.+|++..|.++++.++.+|+++.+..++++..++..++.++..++..+...|.+++|+|||+|+.|+...
T Consensus 271 R~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~ 350 (716)
T KOG0058|consen 271 RNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEV 350 (716)
T ss_pred HHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 173 SKVQNVRNDELSWFRKAQFLAACNSFILNSIP--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQ 250 (1293)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~ 250 (1293)
+++.+.-++..+..+|.......+....++.. ..+.++++|++++..|.+|+|.+.+|+.+-..+..++..+...++.
T Consensus 351 ~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~ 430 (716)
T KOG0058|consen 351 KRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSE 430 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888877776665555544444433 3456788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCCCC-CCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHH
Q 000774 251 VVNANVSLKRMEEFLLAEEKILLPNPPLT-SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL 329 (1293)
Q Consensus 251 ~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~-~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTL 329 (1293)
++++..|.+|+.++++.+|.........+ .-...|+|+||+|+||.+++.++|+|+||+|+|||.+|||||||+||||+
T Consensus 431 lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTi 510 (716)
T KOG0058|consen 431 LMKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTI 510 (716)
T ss_pred HHHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHH
Confidence 99999999999999998876533321111 23457999999999999888899999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCce------------eecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcC
Q 000774 330 ISAMLGELPPVSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLL 396 (1293)
Q Consensus 330 l~~l~g~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l 396 (1293)
+++|.++|+|++|.+. .+|++||+|.|+|.||++||+|||.+|.+ .++++++++++.+..++++..+
T Consensus 511 asLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~ 590 (716)
T KOG0058|consen 511 ASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNF 590 (716)
T ss_pred HHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC
Confidence 9999999999998432 25678999999999999999999999975 5789999999999999999999
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhC
Q 000774 397 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV 476 (1293)
Q Consensus 397 ~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~ 476 (1293)
|+||+|.+||+|..|||||||||||||||++||.||||||+||+||.+++..+-+ .+....+++|||+|+||++++++|
T Consensus 591 p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~-aL~~~~~~rTVlvIAHRLSTV~~A 669 (716)
T KOG0058|consen 591 PDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQE-ALDRLMQGRTVLVIAHRLSTVRHA 669 (716)
T ss_pred ccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHH-HHHHhhcCCeEEEEehhhhHhhhc
Confidence 9999999999999999999999999999999999999999999999998877754 566667889999999999999999
Q ss_pred CeEEEEeCCeEEEecChHHHhhcc-HHHHHHHHHhc
Q 000774 477 DRIILVHEGMVKEEGTFEDLSNNG-ELFQKLMENAG 511 (1293)
Q Consensus 477 d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~~~~ 511 (1293)
|+|+++++|++++.|+|+||++.. +.|.++++.+.
T Consensus 670 d~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~ 705 (716)
T KOG0058|consen 670 DQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQL 705 (716)
T ss_pred cEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhc
Confidence 999999999999999999999987 79999987653
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-73 Score=703.83 Aligned_cols=496 Identities=24% Similarity=0.377 Sum_probs=444.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHH
Q 000774 11 YIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALH 89 (1293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~ 89 (1293)
+++++++++..++..++.....+...+++.|+...+..++|+|++++|..+++++++|++++|+ +|.+.|++++ ..+.
T Consensus 194 ~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l 272 (709)
T COG2274 194 TVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSIL 272 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHH
Confidence 3445556666777777777888888899999999999999999999999999999999999996 7899999876 5677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 000774 90 TLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWEN 169 (1293)
Q Consensus 90 ~~~~~~~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~ 169 (1293)
..+...+.+++.+++|+++.|.+++++++.+++++.+..++.+..++..++..+...+..+.+.|.++|+++||..+.|+
T Consensus 273 ~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~ 352 (709)
T COG2274 273 TLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEP 352 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhH
Confidence 77777777888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 170 SFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNM 247 (1293)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~ 247 (1293)
.+..+|++...+..+...+..........+..++..+ +.++++|++.++.|.+|.|.++++.++...+..|+..+.+.
T Consensus 353 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~ 432 (709)
T COG2274 353 RFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQL 432 (709)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999998888777776666666555554433 56788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCCC--CCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCc
Q 000774 248 ITQVVNANVSLKRMEEFLLAEEKILLPN--PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 325 (1293)
Q Consensus 248 ~~~~~~~~~s~~Ri~~~l~~~~~~~~~~--~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsG 325 (1293)
+..++++..+.+|+.++++.|++...+. ...+.-...|+++||+|+|+.+ ++++|+|+||+|++||++||||+||||
T Consensus 433 ~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsG 511 (709)
T COG2274 433 WTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSG 511 (709)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCC
Confidence 9999999999999999999887753322 1122334579999999999853 458999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCce------------eecCcEEEEcCCccccCccHHHHHccCCCC-CHHHHHHHHHHcCChhH
Q 000774 326 KTSLISAMLGELPPVSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHD 392 (1293)
Q Consensus 326 KSTLl~~l~g~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~-~~~~~~~~~~~~~l~~~ 392 (1293)
||||+|+|+|+|+|++|... .+|+.||||+|++.+|++||+|||.++++. +.+++.++++.++.+++
T Consensus 512 KSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~f 591 (709)
T COG2274 512 KSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEF 591 (709)
T ss_pred HHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHH
Confidence 99999999999999999432 256789999999999999999999999875 55899999999999999
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcch
Q 000774 393 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 472 (1293)
Q Consensus 393 ~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~ 472 (1293)
+..+|.||+|.+||+|.+||||||||++|||||+++|+|||||||||+||+++++.+.+++.+ ..+|+|+|+||||++.
T Consensus 592 I~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~-~~~~~T~I~IaHRl~t 670 (709)
T COG2274 592 IENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ-ILQGRTVIIIAHRLST 670 (709)
T ss_pred HHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHH-HhcCCeEEEEEccchH
Confidence 999999999999999999999999999999999999999999999999999999999987654 5678999999999999
Q ss_pred hhhCCeEEEEeCCeEEEecChHHHhhccHHHHHHHHH
Q 000774 473 LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 509 (1293)
Q Consensus 473 l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 509 (1293)
+++||||+||++|+|+++|+|+|+++.++.|.+++..
T Consensus 671 i~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~ 707 (709)
T COG2274 671 IRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQ 707 (709)
T ss_pred hhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhc
Confidence 9999999999999999999999999999999988764
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-71 Score=701.32 Aligned_cols=565 Identities=20% Similarity=0.257 Sum_probs=437.7
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCC-C-Cc-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 573 KVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKT-H-GP-LFYNTIYSLLSFGQVLVTLANSYWLI 649 (1293)
Q Consensus 573 ~~~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~-~-~~-~~~~~~~~~l~~~~~~~~~~~~~~~~ 649 (1293)
+.+++|.++. ++.+++.+++.++...+....|+.+...+|...... . .. ..+..++.++.++..++.+++.++..
T Consensus 11 ~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 11 RWLKQQSKPA--KRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred HHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555433 233445556666667777777877777666432111 1 11 12333444455667778888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 650 ISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 729 (1293)
Q Consensus 650 ~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1293)
..+.+...++|.+++++++++|..+|+++++|++++|+++|++.++..+...+..++..++.++..++++++++|.+.++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888888888888888888888888877665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 730 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW 809 (1293)
Q Consensus 730 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (1293)
++..+++...+...+.+..++..+......+.+.+.+.|.++|+++||+|+.++++.+++.+..+...+..........+
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFL 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444444444555555555555566678889999999999999999999999888887777766655544443333
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHhcCcccchh---hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000774 810 LAIRLEIVGGLMIWLTAT-FAVVQNGSAENQE---AF-ASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI 884 (1293)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~-~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~ 884 (1293)
......++..+..++++. ......+..+... .+ ......++.+...+..++..+......+.....+.+|+.+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 328 (588)
T PRK11174 249 SSAVLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFL 328 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333222211111 1111112222111 01 111122234455667788888888888999999999999999
Q ss_pred cCCCCCccccCCCCCCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCc
Q 000774 885 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964 (1293)
Q Consensus 885 ~~~~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~ 964 (1293)
+.+++.+.. ...+. ..+..+.|+++||+|.|.++ +++|+|+||+|+|||++||+||||||||||+++|+|++ |++
T Consensus 329 ~~~~~~~~~--~~~~~-~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 329 ETPLAHPQQ--GEKEL-ASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred cCCCcccCC--Ccccc-CCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 876542211 11000 11123469999999877544 47999999999999999999999999999999999999 999
Q ss_pred ceEEECCeecCCCChHHHhhhceEEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCC
Q 000774 965 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043 (1293)
Q Consensus 965 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~ 1043 (1293)
|+|.+||+|+++++++++|++|+||||+|++|++||+|||.++. +.++++++++++.++++++++++|+|+||.++++|
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 99999999999999999999999999999999999999999874 57899999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEee
Q 000774 1044 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1123 (1293)
Q Consensus 1044 ~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~ 1123 (1293)
.+|||||||||+||||++++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|++|++|++++
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e 563 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQ 563 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEee
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChhhhhhcCCChHHHHHHhh
Q 000774 1124 YDTPEELLSNEGSSFSKMVQST 1145 (1293)
Q Consensus 1124 ~g~~~el~~~~~~~~~~l~~~~ 1145 (1293)
.|+|+||+++ ++.|++++..+
T Consensus 564 ~G~~~eL~~~-~~~y~~l~~~q 584 (588)
T PRK11174 564 QGDYAELSQA-GGLFATLLAHR 584 (588)
T ss_pred cCCHHHHHhc-chHHHHHHHHh
Confidence 9999999975 46788777653
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-71 Score=690.78 Aligned_cols=547 Identities=31% Similarity=0.432 Sum_probs=437.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 587 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 666 (1293)
Q Consensus 587 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 666 (1293)
.+...+++.++...+....+.++....+...........+...+.++.++..++.++..++..+.+.+...++|.+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~ 94 (567)
T COG1132 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEK 94 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566667777777777766554431111112233344445556677777778888888899999999999999
Q ss_pred HHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 667 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 746 (1293)
Q Consensus 667 ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 746 (1293)
+++.|+.+|+++++|++++|+++|++.++..+......+...++.+++.+++++..+|.+.++++...+++......+.+
T Consensus 95 l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~ 174 (567)
T COG1132 95 LLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLAR 174 (567)
T ss_pred HHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988887555555677788888888888887766655544444444444443
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 747 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTA 826 (1293)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1293)
..++..+......+.+.+.+.|.++|++++|+|+.++...+++.+..+...+.................++..+...+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (567)
T COG1132 175 KSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVL 254 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666778899999999999999999999987777666666655555433333333333223333222222222
Q ss_pred HHHH--HhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCCCCC
Q 000774 827 TFAV--VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 904 (1293)
Q Consensus 827 ~~~~--~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~~~~ 904 (1293)
.+.. +..+..+ .+.+..++.+...+..++..+......++....+.+|+.++++.+++... ...+ ...
T Consensus 255 ~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~ 324 (567)
T COG1132 255 ALGGFLVLSGSLT-----VGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKD 324 (567)
T ss_pred HHHHHHHHcCCCC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCC
Confidence 1111 2233333 55667777888888889999999999999999999999999987554211 1111 123
Q ss_pred CCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhh
Q 000774 905 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984 (1293)
Q Consensus 905 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 984 (1293)
..+.|+++||+|+|+++ +++|+|+||+++|||++||||||||||||++++|+|+|+|++|+|.+||+|+++++..++|+
T Consensus 325 ~~~~I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~ 403 (567)
T COG1132 325 TIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRK 403 (567)
T ss_pred CCCeEEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHH
Confidence 44679999999999853 37999999999999999999999999999999999999999999999999999999999999
Q ss_pred hceEEccccccccccHhhhcCCCCC-CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000774 985 ILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1063 (1293)
Q Consensus 985 ~i~~v~Q~~~lf~~ti~~nl~~~~~-~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 1063 (1293)
+|++|||+|.||++||++||.++.+ .++++++++++.++++++++++|+|+||.++++|.+|||||||||+||||++++
T Consensus 404 ~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~ 483 (567)
T COG1132 404 RIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483 (567)
T ss_pred hccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998865 689999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChHHHHHH
Q 000774 1064 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1143 (1293)
Q Consensus 1064 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~l~~ 1143 (1293)
|+|||||||||+||++|++.|++.+++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||+++ ++.|+++++
T Consensus 484 ~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~ 562 (567)
T COG1132 484 PPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQ 562 (567)
T ss_pred CCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHH
Confidence 9999999999999999999999999988888999999999999999999999999999999999999987 789999987
Q ss_pred hh
Q 000774 1144 ST 1145 (1293)
Q Consensus 1144 ~~ 1145 (1293)
.+
T Consensus 563 ~~ 564 (567)
T COG1132 563 AQ 564 (567)
T ss_pred Hh
Confidence 64
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-70 Score=699.00 Aligned_cols=544 Identities=24% Similarity=0.298 Sum_probs=440.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 586 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF--YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAM 663 (1293)
Q Consensus 586 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 663 (1293)
+.+...+++.++..++....|.++...+|........... ....++++.++..++.+++.++....+.+...+++..+
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 215 (686)
T TIGR03797 136 RDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAV 215 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777778888888888777655322211111 23344455666778889999999999999999999999
Q ss_pred HHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 664 LHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLY 743 (1293)
Q Consensus 664 ~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 743 (1293)
+++++++|+.||+++++|++++|++ |++.+++.+...+...+......+..++++++++|.+.++++.++++.+.+...
T Consensus 216 ~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~ 294 (686)
T TIGR03797 216 WDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLV 294 (686)
T ss_pred HHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997 789998887776666666666666777778888887777666555554445555
Q ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 744 YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW 823 (1293)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1293)
+.+..++..+......+...+.+.|.++|+.++|+++.++++.+++.+..+...+..........+......++..+...
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 374 (686)
T TIGR03797 295 LGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSA 374 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444455555566788999999999999999999999988888888877776666655555555444443332222
Q ss_pred HHHHHH--HHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCC
Q 000774 824 LTATFA--VVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 901 (1293)
Q Consensus 824 ~~~~~~--~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~ 901 (1293)
++.++. .+..+..+ .+.+..+..+...+..++..+...+..++....+.+|+.++++.++|.+.. ...
T Consensus 375 ~il~~g~~lv~~g~lt-----iG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~~-- 444 (686)
T TIGR03797 375 ALFAAAISLLGGAGLS-----LGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA---KTD-- 444 (686)
T ss_pred HHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC---cCC--
Confidence 222221 12344444 444445556666777888889999999999999999999999876553211 111
Q ss_pred CCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH
Q 000774 902 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 981 (1293)
Q Consensus 902 ~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 981 (1293)
..+..+.|+++||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|.+||+|++++++.+
T Consensus 445 ~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~ 524 (686)
T TIGR03797 445 PGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQA 524 (686)
T ss_pred CCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHH
Confidence 11234579999999999755567999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhceEEccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 000774 982 LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 1061 (1293)
Q Consensus 982 ~r~~i~~v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 1061 (1293)
+|++||||||+|.+|++||+|||.++.+.++++++++++.++++++++++|.|+||.++++|.+||||||||++|||||+
T Consensus 525 lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll 604 (686)
T TIGR03797 525 VRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV 604 (686)
T ss_pred HHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999987668899999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChHHHH
Q 000774 1062 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1141 (1293)
Q Consensus 1062 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~l 1141 (1293)
++|+|||||||||+||+++++.+.+.|++. ++|+|+||||++++..||+|++|++|++++.|+|+||+++ ++.|+++
T Consensus 605 ~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l 681 (686)
T TIGR03797 605 RKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQL 681 (686)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHH
Confidence 999999999999999999999999999985 6899999999999999999999999999999999999975 5678877
Q ss_pred HH
Q 000774 1142 VQ 1143 (1293)
Q Consensus 1142 ~~ 1143 (1293)
+.
T Consensus 682 ~~ 683 (686)
T TIGR03797 682 AR 683 (686)
T ss_pred HH
Confidence 65
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-70 Score=695.53 Aligned_cols=543 Identities=24% Similarity=0.344 Sum_probs=438.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 586 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF--YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAM 663 (1293)
Q Consensus 586 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 663 (1293)
+.+...+++.++...+....|.+....+|..........+ ...++.++.++..++.+++.++......+...++|.++
T Consensus 161 ~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l 240 (711)
T TIGR00958 161 PWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDL 240 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777788888888888777654322111111 23334445566777788888899999999999999999
Q ss_pred HHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 664 LHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLY 743 (1293)
Q Consensus 664 ~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 743 (1293)
+++++++|+.||+++++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.+.++++..+++.+.+...
T Consensus 241 ~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~ 320 (711)
T TIGR00958 241 FRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKV 320 (711)
T ss_pred HHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888888888888888888889988777665555555555556
Q ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 000774 744 YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAI---RLEIVGGL 820 (1293)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 820 (1293)
+.+..++..+......+...+.+.|.++|+++||+|+.++++.+++.+..++..+.............. ....+..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (711)
T TIGR00958 321 FGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQV 400 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666556555555666677889999999999999999999998888888777766554433322222222 22222222
Q ss_pred HHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCC
Q 000774 821 MIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 900 (1293)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~ 900 (1293)
+++..+.+ .+..+..+ .+.+..++.+...+..++..+......++....+.+|+.++++.+++.+.. .. .
T Consensus 401 ~il~~g~~-lv~~g~it-----~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~---~~-~ 470 (711)
T TIGR00958 401 LVLYYGGQ-LVLTGKVS-----SGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT---GT-L 470 (711)
T ss_pred HHHHHHHH-HHHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC---CC-C
Confidence 22222222 23344444 455666677778888899999999999999999999999999866543211 11 1
Q ss_pred CCCCCCccEEEEEEEEEecCC-CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCCh
Q 000774 901 PGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 979 (1293)
Q Consensus 901 ~~~~~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~ 979 (1293)
..++..+.|+++||+|+|++. .+++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+|.+||+|+++++.
T Consensus 471 ~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~ 550 (711)
T TIGR00958 471 APLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDH 550 (711)
T ss_pred CCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCH
Confidence 112345679999999999753 2479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhceEEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000774 980 MDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1058 (1293)
Q Consensus 980 ~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 1058 (1293)
+.+|++|+||||+|.+|++||||||.+.. +.++++++++++.++++++++++|.|+||.+++.|.+|||||||||+|||
T Consensus 551 ~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalAR 630 (711)
T TIGR00958 551 HYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIAR 630 (711)
T ss_pred HHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHH
Confidence 99999999999999999999999998664 46789999999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChH
Q 000774 1059 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138 (1293)
Q Consensus 1059 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 1138 (1293)
|++++|+|||||||||+||+++++.+++ ....+++|+|+||||++++..||+|++|++|+|++.|+|+||+++ ++.|
T Consensus 631 ALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~-~~~y 707 (711)
T TIGR00958 631 ALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED-QGCY 707 (711)
T ss_pred HHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC-CCch
Confidence 9999999999999999999999999999 333478999999999999999999999999999999999999976 4567
Q ss_pred HHH
Q 000774 1139 SKM 1141 (1293)
Q Consensus 1139 ~~l 1141 (1293)
+++
T Consensus 708 ~~l 710 (711)
T TIGR00958 708 KHL 710 (711)
T ss_pred Hhc
Confidence 654
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-70 Score=686.59 Aligned_cols=492 Identities=21% Similarity=0.281 Sum_probs=405.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000774 14 AFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLW 92 (1293)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~ 92 (1293)
+++++++.++..++.....+...+.+.++...+|..+|+|++++|..++++.++|++++++++|++.+++++ ..+..++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~ 145 (588)
T PRK11174 66 FILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMA 145 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 334445556666777777777888999999999999999999999999999999999999999999999876 4566777
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHH
Q 000774 93 SAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQ 172 (1293)
Q Consensus 93 ~~~~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~ 172 (1293)
..++.++++++++++..|+++++.++++++++.+..++.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.
T Consensus 146 ~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~ 225 (588)
T PRK11174 146 LAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAET 225 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHH
Confidence 77777777777788888888888777777777777778888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHH---------HHHHHHHHHHHHHHH
Q 000774 173 SKVQNVRNDELSWFRKAQFLAACNSFILNSIPVL--VTVVSFGMFTLLGGDLTPAR---------AFTSLSLFAVLRFPL 241 (1293)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~lt~~~---------~~~~l~~~~~l~~pl 241 (1293)
+++.+..++..+...+..........+...+..+ +.++.++++.+. |.+++|. +++++.+...+..|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl 304 (588)
T PRK11174 226 ESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPL 304 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHH
Confidence 9887776666555444444333333332222221 122233333333 5555553 344446667778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCC-CCC-CCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEE
Q 000774 242 FMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP-PLT-SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIV 319 (1293)
Q Consensus 242 ~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~-~~~-~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lv 319 (1293)
..++..+..+.++.++++||.++++.+++...... ..+ .....|+++||+|.|++ ++++|+|+||+|++|+++|||
T Consensus 305 ~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIv 382 (588)
T PRK11174 305 RDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALV 382 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEE
Confidence 99999999999999999999999987653211111 111 12235999999987753 468999999999999999999
Q ss_pred cCCCCcHHHHHHHHhcCCCCCCCCce------------eecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHH
Q 000774 320 GGTGEGKTSLISAMLGELPPVSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDV 386 (1293)
Q Consensus 320 G~~GsGKSTLl~~l~g~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~ 386 (1293)
||||||||||+++|+|++ |++|... .+|+.|+||||+|++|++||+|||.+|++ .++++++++++.
T Consensus 383 G~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~ 461 (588)
T PRK11174 383 GPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALEN 461 (588)
T ss_pred CCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHH
Confidence 999999999999999999 8888421 13457999999999999999999999964 789999999999
Q ss_pred cCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEE
Q 000774 387 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLV 466 (1293)
Q Consensus 387 ~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~v 466 (1293)
|+++++++.+|+|++|.+||+|.+|||||||||+|||||+++|+|||||||||+||+++++.+.+.+ ....+++|+|+|
T Consensus 462 a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l-~~~~~~~TvIiI 540 (588)
T PRK11174 462 AWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL-NAASRRQTTLMV 540 (588)
T ss_pred hCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHhCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999998755 445678999999
Q ss_pred ecCcchhhhCCeEEEEeCCeEEEecChHHHhhccHHHHHHHHHh
Q 000774 467 TNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 510 (1293)
Q Consensus 467 tH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 510 (1293)
|||++.++.||+|++|++|+++++|+|+|++++++.|++++..+
T Consensus 541 tHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~q 584 (588)
T PRK11174 541 THQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHR 584 (588)
T ss_pred ecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHHh
Confidence 99999999999999999999999999999999999999998764
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-69 Score=696.32 Aligned_cols=557 Identities=21% Similarity=0.294 Sum_probs=443.0
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCch-H-HHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 572 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL-F-YNTIYSLLSFGQVLVTLANSYWLI 649 (1293)
Q Consensus 572 ~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~~~~~ 649 (1293)
++.++.+++.. .+.+...+++.++..++.+..|.++..+.|.......... . +...+.++.+...++.+++.++..
T Consensus 144 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQ--KKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444432 2334455566667777778888888888776543221111 1 222334445566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 650 ISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 729 (1293)
Q Consensus 650 ~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1293)
..+.+...+++.+++++++++|+.||+++++|++++|++ |+..+.+.+.......+..+..++..++++++++|.+.++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 300 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLL 300 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998 8999988777666666666666666777777888877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 730 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW 809 (1293)
Q Consensus 730 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (1293)
++..+++++.+...+.+..++..+......+...+.+.|+++|+++||+++.++++.+++.+......+..........+
T Consensus 301 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (708)
T TIGR01193 301 SLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQG 380 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555556666666666666667778889999999999999999999998888877776665555444333333
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 000774 810 LAIRLEIV---GGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL 886 (1293)
Q Consensus 810 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~ 886 (1293)
......++ ..+++++++.+. +..+..+ .+.+..+..+...+..++..+......++....+.+|+.++++.
T Consensus 381 ~~~~~~~~~~~~~i~il~~g~~l-v~~g~ls-----~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 454 (708)
T TIGR01193 381 QQAIKAVTKLILNVVILWTGAYL-VMRGKLT-----LGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLV 454 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33222222 222222222222 2344444 44555566677778888999999999999999999999999987
Q ss_pred CCCCccccCCCCCCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcce
Q 000774 887 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966 (1293)
Q Consensus 887 ~~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~ 966 (1293)
++|.+... .....++..+.|+++||+|+|+++ +++|+|+||+|+|||++||+||||||||||+++|+|+|+|++|+
T Consensus 455 ~~e~~~~~---~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~ 530 (708)
T TIGR01193 455 DSEFINKK---KRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530 (708)
T ss_pred CCcccccc---cccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence 76543211 101112345679999999999743 47999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCChHHHhhhceEEccccccccccHhhhcCCC--CCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCC
Q 000774 967 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF--SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 1044 (1293)
Q Consensus 967 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~--~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~ 1044 (1293)
|.+||+|+++++++++|++||||||+|.+|++||+|||.++ .+.++++++++++.++++++++++|.|+||.++++|.
T Consensus 531 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~ 610 (708)
T TIGR01193 531 ILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS 610 (708)
T ss_pred EEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCC
Confidence 99999999999999999999999999999999999999976 3568899999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeee
Q 000774 1045 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1124 (1293)
Q Consensus 1045 ~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 1124 (1293)
+|||||||||+||||++++|+|||||||||+||+++++.+++.|++. +++|+|+||||++++..||+|++|++|++++.
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999985 68999999999999999999999999999999
Q ss_pred cChhhhhhcCCChHHHHHH
Q 000774 1125 DTPEELLSNEGSSFSKMVQ 1143 (1293)
Q Consensus 1125 g~~~el~~~~~~~~~~l~~ 1143 (1293)
|+|+||+++ ++.|+++++
T Consensus 690 G~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 690 GSHDELLDR-NGFYASLIH 707 (708)
T ss_pred CCHHHHHhc-CCcHHHHhh
Confidence 999999975 567877664
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-69 Score=696.66 Aligned_cols=560 Identities=23% Similarity=0.313 Sum_probs=446.1
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 572 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL--FYNTIYSLLSFGQVLVTLANSYWLI 649 (1293)
Q Consensus 572 ~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~ 649 (1293)
++.++++++.. +..+...+++.++..++....|.++...+|.......... .+...+.++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGS--RGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445444432 2333445555566667777778888777765432222221 1233344455667788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 650 ISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 729 (1293)
Q Consensus 650 ~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1293)
..+.+...+++.+++++++++|+.||+++++|++++|+++| ..+.+.+...+...+..+..++..++++++++|.+.++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 298 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988 67888887777777777888888888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 730 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW 809 (1293)
Q Consensus 730 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (1293)
.+.++++.+.+...+.+..++..+......+...+.+.|.++|+.+||+++.++.+.+++.+......+..........+
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555555555655555555555566678889999999999999999999998888887777666655554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 000774 810 LAIRLEIVGGLMIWLTATFA--VVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 887 (1293)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~ 887 (1293)
......++..+...++.++. .+..+..+ .+.+..+..+...+..++..+...+..++....+.+|+.++++.+
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt-----~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~ 453 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLT-----IGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNP 453 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44443333332222222211 22344444 445555666777788888999999999999999999999999877
Q ss_pred CCCccccCC--C-CCCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCc
Q 000774 888 SEAPLVIES--N-RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964 (1293)
Q Consensus 888 ~e~~~~~~~--~-~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~ 964 (1293)
+|.+..... . ...+.++..+.|+++||+|+|++..+++|+|+||+|+|||++||+||||||||||+++|+|+|+|++
T Consensus 454 ~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 454 VDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred CccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 654321100 0 0001022356799999999998655679999999999999999999999999999999999999999
Q ss_pred ceEEECCeecCCCChHHHhhhceEEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCC
Q 000774 965 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043 (1293)
Q Consensus 965 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~ 1043 (1293)
|+|.+||.|++++++.++|++||||||+|.+|++||||||.++. +.++++++++++.++++++++++|.|+||.++++|
T Consensus 534 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred cEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 99999999999999999999999999999999999999998764 56899999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEee
Q 000774 1044 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1123 (1293)
Q Consensus 1044 ~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~ 1123 (1293)
.+|||||||||+|||||+++|+|||||||||+||+++++.+.+.|++ .++|+|+||||++++..||||++|++|++++
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~ 691 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999987 6899999999999999999999999999999
Q ss_pred ecChhhhhhcCCChHHHHH
Q 000774 1124 YDTPEELLSNEGSSFSKMV 1142 (1293)
Q Consensus 1124 ~g~~~el~~~~~~~~~~l~ 1142 (1293)
.|+|+||+++ ++.|++++
T Consensus 692 ~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 692 RGTHEELWAV-GGAYARLI 709 (710)
T ss_pred ecCHHHHHHc-CCcHHHHh
Confidence 9999999975 56677665
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-71 Score=651.07 Aligned_cols=465 Identities=25% Similarity=0.400 Sum_probs=353.9
Q ss_pred cEEEEeeEEEcCCCCCC-CceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC----CCCcee------------
Q 000774 284 AISIRNGYFSWDSKAER-PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV----SDASAV------------ 346 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~-~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~----~g~~~~------------ 346 (1293)
.++++|++..|....+. ++++||||+|.+||++||||+|||||||++++|.|++++. +|.+..
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 68999999999754322 5999999999999999999999999999999999999886 453211
Q ss_pred ----ecCcEEEEcCCccc-cC--ccHHHHHcc----CCCCC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCC
Q 000774 347 ----IRGTVAYVPQVSWI-FN--ATVRDNILF----GSAFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 411 (1293)
Q Consensus 347 ----~~~~i~~v~Q~~~l-~~--~Tv~eni~~----g~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~L 411 (1293)
..+.|+|+||+|.= +| .||.+-|.- ....+ .++..+.++.+++.+.... ....+.|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 12369999999863 54 477766642 22221 2344556777777655443 2234699
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhhh-CCeEEEEeCCeEEE
Q 000774 412 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKE 489 (1293)
Q Consensus 412 SGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~ 489 (1293)
|||||||+.||+||+.+|++||+||||++||+.+..+|.+.+.+.. ..|.++|+||||+..+.+ ||||+||++|++++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999998665543 458999999999999875 89999999999999
Q ss_pred ecChHHHhhccHH-HHH-HHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccccccchhhhhhhc
Q 000774 490 EGTFEDLSNNGEL-FQK-LMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERET 567 (1293)
Q Consensus 490 ~g~~~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (1293)
.|+.++++++... |.. ++.. .
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~a--------------------------------~------------------------- 258 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLAA--------------------------------V------------------------- 258 (539)
T ss_pred ecCHHHHHhccCCcccHHHHhh--------------------------------C-------------------------
Confidence 9999998754210 000 0000 0
Q ss_pred CcccHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 568 GVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYW 647 (1293)
Q Consensus 568 g~~~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 647 (1293)
T Consensus 259 -------------------------------------------------------------------------------- 258 (539)
T COG1123 259 -------------------------------------------------------------------------------- 258 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 648 LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSL 727 (1293)
Q Consensus 648 ~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1293)
|.. ..
T Consensus 259 -----------------------p~~--~~-------------------------------------------------- 263 (539)
T COG1123 259 -----------------------PRL--GD-------------------------------------------------- 263 (539)
T ss_pred -----------------------CCc--cc--------------------------------------------------
Confidence 000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 728 WAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGAN 807 (1293)
Q Consensus 728 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1293)
T Consensus 264 -------------------------------------------------------------------------------- 263 (539)
T COG1123 264 -------------------------------------------------------------------------------- 263 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 000774 808 RWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 887 (1293)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~ 887 (1293)
......+
T Consensus 264 -------------------------------------------------------------------------~~~~~~~ 270 (539)
T COG1123 264 -------------------------------------------------------------------------EKIIRLP 270 (539)
T ss_pred -------------------------------------------------------------------------ccccccc
Confidence 0000000
Q ss_pred CCCccccCCCCCCCCCCCCccEEEEEEEEEecC---------CCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Q 000774 888 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 888 ~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~---------~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g 958 (1293)
... +. +....++++|+++.|.. ....+++||||+|++||++||||+||||||||.++|+|
T Consensus 271 ~~~--------~~---~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 271 RRG--------PL---RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred ccc--------cc---ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhC
Confidence 000 00 01124899999999973 12468999999999999999999999999999999999
Q ss_pred CCCCCcceEEECCee--cCCCChHHHhhhceEEccccc--ccc-ccHhhhcC-C---CCCCC----HHHHHHHHHHhhHH
Q 000774 959 IVELERGRILIDGFD--IAKFGLMDLRKILGIIPQSPV--LFS-GTVRFNLD-P---FSEHS----DADLWEALERAHLK 1025 (1293)
Q Consensus 959 ~~~p~~G~I~i~g~~--i~~~~~~~~r~~i~~v~Q~~~--lf~-~ti~~nl~-~---~~~~~----~~~~~~~l~~~~l~ 1025 (1293)
+++|++|+|.++|.| ++.-.....|+++-+|+|||+ |-. .||+++|. + ..... ++.+.+.++.+++.
T Consensus 340 L~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~ 419 (539)
T COG1123 340 LLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLP 419 (539)
T ss_pred CCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCC
Confidence 999999999999987 232234457789999999996 333 49999874 1 11111 12233334444332
Q ss_pred HHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecC
Q 000774 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHR 1103 (1293)
Q Consensus 1026 ~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~ 1103 (1293)
. ...+..++.||||||||+||||||..+|++||+|||||+||+-+...+.+.|+++.+ +.|.|+||||
T Consensus 420 ~----------~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHD 489 (539)
T COG1123 420 P----------EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHD 489 (539)
T ss_pred H----------HHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 1 146677789999999999999999999999999999999999999999999998754 6999999999
Q ss_pred cchhhc-cCEEEEEeCCeEeeecChhhhhhcCCChHHHHHH
Q 000774 1104 LNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1143 (1293)
Q Consensus 1104 ~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~l~~ 1143 (1293)
+..++. ||||+||.+|+|+|.|+.+++.+.....|.+..-
T Consensus 490 l~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 490 LAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLL 530 (539)
T ss_pred HHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHH
Confidence 999998 9999999999999999999999877666765443
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-69 Score=678.35 Aligned_cols=545 Identities=25% Similarity=0.380 Sum_probs=433.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 587 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF----YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDA 662 (1293)
Q Consensus 587 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 662 (1293)
.+...+++.++...+....|.++...+|........... +..++.++.++..++.++..++....+.+...++|.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 103 (592)
T PRK10790 24 PLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTD 103 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777788888888777654321111111 1122333444566777888888899999999999999
Q ss_pred HHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 663 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYL 742 (1293)
Q Consensus 663 ~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 742 (1293)
+++++++.|..+|++.++|++++|+++|++.++..+...+..++..+..++..++++++++|.+.++++..+++...+..
T Consensus 104 l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~ 183 (592)
T PRK10790 104 VMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMV 183 (592)
T ss_pred HHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888888888888888888888888766554433333333333
Q ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000774 743 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL-AIRLEIVGGLM 821 (1293)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 821 (1293)
.+.+..+...+......+....++.|.++|+.++|+|+.++++.+++.+..+...+..........+. .....++..++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (592)
T PRK10790 184 IYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALI 263 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444344444444456677888999999999999999999988888877766555544433322221 12222222211
Q ss_pred HHHH-HHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCC
Q 000774 822 IWLT-ATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 900 (1293)
Q Consensus 822 ~~~~-~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~ 900 (1293)
..++ ..+.....+..+ .+.+..++.+...+..++..+...+..++....+.+|+.++++.++++... ..
T Consensus 264 ~~~~~~~~~~~~~g~is-----~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~-- 333 (592)
T PRK10790 264 LCGLLMLFGFSASGTIE-----VGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN---DD-- 333 (592)
T ss_pred HHHHHHHHHHHHCCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC---Cc--
Confidence 1111 111112334333 455556667777888899999999999999999999999998765432111 11
Q ss_pred CCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChH
Q 000774 901 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 980 (1293)
Q Consensus 901 ~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~ 980 (1293)
.++..+.|+++||+|+|+++ +++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.|+++++++
T Consensus 334 -~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~ 411 (592)
T PRK10790 334 -RPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHS 411 (592)
T ss_pred -cCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHH
Confidence 11234579999999999754 4699999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhceEEccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
.+|++|+||||+|.+|++|+++||.++++.++++++++++.++++++++++|+|+||.+++.|.+||||||||++|||||
T Consensus 412 ~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaL 491 (592)
T PRK10790 412 VLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVL 491 (592)
T ss_pred HHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998877789999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChHHH
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 1140 (1293)
+++|+|||||||||+||+++++.|.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|+||+++ ++.|++
T Consensus 492 l~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~-~~~y~~ 570 (592)
T PRK10790 492 VQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QGRYWQ 570 (592)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCHHHH
Confidence 9999999999999999999999999999998788999999999999999999999999999999999999976 478888
Q ss_pred HHHh
Q 000774 1141 MVQS 1144 (1293)
Q Consensus 1141 l~~~ 1144 (1293)
+++.
T Consensus 571 l~~~ 574 (592)
T PRK10790 571 MYQL 574 (592)
T ss_pred HHHH
Confidence 8765
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-71 Score=690.22 Aligned_cols=511 Identities=23% Similarity=0.345 Sum_probs=415.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHH
Q 000774 625 FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 704 (1293)
Q Consensus 625 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~ 704 (1293)
.+.+.|..++++..+..++...++...+.|...++|.++++.+||+++.|||.+..|++..|+++|++.+++.+...+..
T Consensus 72 ~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~ 151 (1228)
T KOG0055|consen 72 KVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGN 151 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHH
Confidence 46667778888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHH
Q 000774 705 FMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 784 (1293)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~ 784 (1293)
++..+..+++.+++.++..|.+.++++++.++.......+.+........+..+.+..-+...|++.+++|+.+|+.|++
T Consensus 152 ~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~ 231 (1228)
T KOG0055|consen 152 FIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKK 231 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHH
Confidence 99999999999999999999988777666555544444444444444444444555666788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHH
Q 000774 785 MADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG----GLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLL 860 (1293)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 860 (1293)
..+++.+.+....+.............-...++. ++.+|.+..+.. .+..++...+....+ ++.-...+
T Consensus 232 e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~--~~~~~~g~v~~v~~~-----vl~g~~sL 304 (1228)
T KOG0055|consen 232 EIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLIL--NGGYNGGDVITVFFS-----VLIGGMSL 304 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCceEEEEEee-----hhhhhhhh
Confidence 9999999999888887665543332222222222 222222222222 122222111111111 11111123
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEecCCC-CCceeeeeEEecCCCEE
Q 000774 861 TAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDKV 939 (1293)
Q Consensus 861 ~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~-~~~l~~vsl~i~~Ge~v 939 (1293)
+........+.+...++.++.+.++..+......+... ......|.|+|+||+|+|+.+. .++|+|+||+|++|+.|
T Consensus 305 gqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~--~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~v 382 (1228)
T KOG0055|consen 305 GQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGR--VLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTV 382 (1228)
T ss_pred hccccchHHHhccccchHHHHHHhcCCCCCCcccccCC--cccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEE
Confidence 33344445556677888899988874433211111111 1123468899999999998653 36999999999999999
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEEccccccccccHhhhcCCCC-CCCHHHHHHH
Q 000774 940 GIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEA 1018 (1293)
Q Consensus 940 ~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~ 1018 (1293)
||||||||||||++++|.|+|+|++|+|.+||.|+++++.+++|++||+|.|+|.||++||+||+.+.. +.+++++.++
T Consensus 383 alVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a 462 (1228)
T KOG0055|consen 383 ALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEA 462 (1228)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999776 5689999999
Q ss_pred HHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Q 000774 1019 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 1098 (1293)
Q Consensus 1019 l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi 1098 (1293)
++.+++++|+..+|+|++|.++++|.+||||||||+||||||+++|+|||||||||+||+++++.++++|++..+|+|.|
T Consensus 463 ~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTi 542 (1228)
T KOG0055|consen 463 AKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTI 542 (1228)
T ss_pred HHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChHHHHHHhh
Q 000774 1099 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1145 (1293)
Q Consensus 1099 ~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~l~~~~ 1145 (1293)
+||||++++++||+|+||++|+|+|.|+|+||++.. +.|+++++.+
T Consensus 543 vVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q 588 (1228)
T KOG0055|consen 543 VVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQ 588 (1228)
T ss_pred EEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHH
Confidence 999999999999999999999999999999999876 8999999764
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-69 Score=618.94 Aligned_cols=501 Identities=21% Similarity=0.325 Sum_probs=418.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Q 000774 632 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ 711 (1293)
Q Consensus 632 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~ 711 (1293)
+++++..+..++..+..+....++-.++|.++|+++...+..-..+..+|+++||+..|++.+|+.+-..+.+++..+..
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~ 145 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVL 145 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHH
Confidence 35666777778888888899999999999999999999999999999999999999999999999999888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHH
Q 000774 712 LLSTFVLIGIVSTMSLWAI-MPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 790 (1293)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~ 790 (1293)
..+..+...+.++...+.+ ..+++..+.+...+.+..+...+.....++.+.+++.|++.|...++.|+..+.+.+.+.
T Consensus 146 ~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~ 225 (573)
T COG4987 146 IAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225 (573)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 7777776766776655433 333344445555556666666666677788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000774 791 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTA-TFAV-VQNGSAENQEAFASTMGLLLSYALNITSLLTAVL-RLA 867 (1293)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~-~~~ 867 (1293)
...+...+..........|....+.++.++++.... +.+. ...|..... ...++.++ +......+..+. ...
T Consensus 226 ~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~---~aa~~ll~--~f~~~eaf~~L~~~A~ 300 (573)
T COG4987 226 ATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQP---GAALALLV--IFAALEAFEPLAPGAF 300 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchh---HHHHHHHH--HHHHHHHHhhhcchhH
Confidence 999999999888888889998888888777666333 3333 222222211 11222222 223333444444 555
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCC
Q 000774 868 SLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 947 (1293)
Q Consensus 868 ~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~Gs 947 (1293)
........|+.|+.++.+.++|.... + ...+ .....++++||+|+|+++.+++|+|+||++++||+|||+|+|||
T Consensus 301 ~~lgq~~~Sa~Rl~~i~~q~~e~~~~-~--~~~~--~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGs 375 (573)
T COG4987 301 QHLGQVIASARRLNDILDQKPEVTFP-D--EQTA--TTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGS 375 (573)
T ss_pred HHhhHHHHHHHHHhhhccCCcccCCC-c--cccC--CccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCC
Confidence 67777888999999998766654321 0 1011 11116999999999998877899999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHH
Q 000774 948 GKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKD 1026 (1293)
Q Consensus 948 GKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~ 1026 (1293)
||||++++|.|.++|++|+|.++|.++..++.+++|+.|++++|.+++|++|+|+||...+ +.+||+++++++++++++
T Consensus 376 GKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~ 455 (573)
T COG4987 376 GKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEK 455 (573)
T ss_pred CHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHH
Confidence 9999999999999999999999999999999999999999999999999999999998654 569999999999999999
Q ss_pred HHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcch
Q 000774 1027 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 1106 (1293)
Q Consensus 1027 ~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~ 1106 (1293)
+++..|+||+|+++|.|..|||||||||+|||+|++|.+++||||||.|||+.|++.+.+.|.+..+++|+|+||||+..
T Consensus 456 l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~ 535 (573)
T COG4987 456 LLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRG 535 (573)
T ss_pred HHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCEEEEEeCCeEeeecChhhhhhcCCChHHHHHH
Q 000774 1107 IIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1143 (1293)
Q Consensus 1107 ~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~l~~ 1143 (1293)
++.||||+||++|+++++|+|.+|++ +.+.|+++++
T Consensus 536 le~~drIivl~~Gkiie~G~~~~Ll~-~~g~~~~l~q 571 (573)
T COG4987 536 LERMDRIIVLDNGKIIEEGTHAELLA-NNGRYKRLYQ 571 (573)
T ss_pred HhhcCEEEEEECCeeeecCCHHhhhc-cccHHHHHhc
Confidence 99999999999999999999999998 4578887765
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-69 Score=628.37 Aligned_cols=497 Identities=22% Similarity=0.323 Sum_probs=426.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHH
Q 000774 11 YIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALH 89 (1293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~ 89 (1293)
+.+++.++++.+++.++.....+...+.+.+++..+|..+++|+.++++.+.++.++|++.+.++..+|.++.++ .+++
T Consensus 40 ~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLP 119 (559)
T COG4988 40 LPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLP 119 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677788888888888888999999999999999999999999999999999999999999999999877 4677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 000774 90 TLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWEN 169 (1293)
Q Consensus 90 ~~~~~~~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~ 169 (1293)
.+..+.+...+.++.+++..|.++++.++.+|++.+++..++.+.++..++++.......+.+.|.++|+.|+|.|+..+
T Consensus 120 q~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~ 199 (559)
T COG4988 120 QMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTE 199 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccH
Confidence 77777777777777777888888888888888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 170 SFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVL--VTVVSFGMFTLLG-GDLTPARAFTSLSLFAVLRFPLFMLPN 246 (1293)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~-~~lt~~~~~~~l~~~~~l~~pl~~l~~ 246 (1293)
...+++.+..++..+...+..++...+.+++.+++.+ ..++.+.++.+.+ |+++....+.++.+...++.|++.++.
T Consensus 200 ~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs 279 (559)
T COG4988 200 ATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGS 279 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8888887766665555444444444444444443332 2223344455566 799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccCCCCC-CCCCCCc--EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCC
Q 000774 247 MITQVVNANVSLKRMEEFLLAEEKILLPNPP-LTSGLPA--ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTG 323 (1293)
Q Consensus 247 ~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~-~~~~~~~--i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~G 323 (1293)
.+|.-.++..+.+++..+++.|......... .....+. ++.+|++|.|++ ++++++|+||++++|+++||||+||
T Consensus 280 ~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~--g~~~l~~l~~t~~~g~~talvG~SG 357 (559)
T COG4988 280 FFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPD--GKPALSDLNLTIKAGQLTALVGASG 357 (559)
T ss_pred HHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCC--CCcccCCceeEecCCcEEEEECCCC
Confidence 9999999999999999999887764322221 1122223 445599999984 3499999999999999999999999
Q ss_pred CcHHHHHHHHhcCCCCCCCCce------------eecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCCh
Q 000774 324 EGKTSLISAMLGELPPVSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQ 390 (1293)
Q Consensus 324 sGKSTLl~~l~g~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~ 390 (1293)
||||||+++|+|+.+|++|... .++++++||+|+|++|.+|++|||.++++ .+++++.++++.+++.
T Consensus 358 aGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~ 437 (559)
T COG4988 358 AGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLL 437 (559)
T ss_pred CCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHH
Confidence 9999999999999999998432 24678999999999999999999999987 6789999999999999
Q ss_pred hHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCc
Q 000774 391 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 470 (1293)
Q Consensus 391 ~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~ 470 (1293)
++++. |+|+||.+||+|.+|||||+|||+|||||+++++++||||||+|||.++++.|.+.+.+ ..+++|+|+||||+
T Consensus 438 ~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~-l~~~ktvl~itHrl 515 (559)
T COG4988 438 EFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQE-LAKQKTVLVITHRL 515 (559)
T ss_pred HhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHH-HHhCCeEEEEEcCh
Confidence 99999 99999999999999999999999999999999999999999999999999999876554 45679999999999
Q ss_pred chhhhCCeEEEEeCCeEEEecChHHHhhccHHHHHHHHHhc
Q 000774 471 HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAG 511 (1293)
Q Consensus 471 ~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 511 (1293)
+.+..+|+|++|++|+++++|+|+++.++++.|++++..+.
T Consensus 516 ~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~ 556 (559)
T COG4988 516 EDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQE 556 (559)
T ss_pred HHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHh
Confidence 99999999999999999999999999999999999987653
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-69 Score=671.83 Aligned_cols=545 Identities=22% Similarity=0.309 Sum_probs=428.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCC---ch-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 588 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG---PL-F--YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 661 (1293)
Q Consensus 588 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~---~~-~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 661 (1293)
+.+.+++.++...+....+..+...++........ .. . ....+.++.++..++.++..++....+.+...++|.
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~ 97 (574)
T PRK11160 18 LSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATFRVLTHLRV 97 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666677776666665542211110 01 1 122233445667778888888889999999999999
Q ss_pred HHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000774 662 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLF-YAA 740 (1293)
Q Consensus 662 ~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~ 740 (1293)
+++++++++|+.+|++.++|++++|+++|++.++..+...+..++..++.++..++++++++|.+.++++..++++ ..+
T Consensus 98 ~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~ 177 (574)
T PRK11160 98 FTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLL 177 (574)
T ss_pred HHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888888888888888888888899988776554333322 223
Q ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 741 YLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL 820 (1293)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1293)
..++.+..++..+......+.+.+.+.|.++|++++|+|+.++++.+++.+..++..+..........+......++..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (574)
T PRK11160 178 PLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGL 257 (574)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555566677888999999999999999999999999888888877776666555555544444444433
Q ss_pred HHHHHHHHHHH-hcCcccchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCC
Q 000774 821 MIWLTATFAVV-QNGSAENQEAFASTMGLLLSYA-LNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNR 898 (1293)
Q Consensus 821 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~ 898 (1293)
...++..+... ..+..+ .+.+..++.|. .....++..+.......+....+.+|+.++++.+++.+.. ...
T Consensus 258 ~~~~i~~~g~~~~~g~~t-----~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~--~~~ 330 (574)
T PRK11160 258 TVVLMLWLAAGGVGGNAQ-----PGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP--TTS 330 (574)
T ss_pred HHHHHHHHHHHHhccccc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccc
Confidence 33222222211 123222 12222222222 2234456666777778888899999999999866542111 011
Q ss_pred CCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCC
Q 000774 899 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG 978 (1293)
Q Consensus 899 ~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~ 978 (1293)
+. .+..+.|+++||+|+|+++.+++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.+||+|+++++
T Consensus 331 ~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~ 408 (574)
T PRK11160 331 TA--AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYS 408 (574)
T ss_pred CC--CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC
Confidence 11 1234579999999999764447999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhceEEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 000774 979 LMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1057 (1293)
Q Consensus 979 ~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 1057 (1293)
..++|++|+||||+|.+|++|++|||.+.. +.++++++++++.+++++++++ |+|+||.++++|.+||||||||++||
T Consensus 409 ~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialA 487 (574)
T PRK11160 409 EAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIA 487 (574)
T ss_pred HHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999998754 4688999999999999999999 99999999999999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCCh
Q 000774 1058 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSS 1137 (1293)
Q Consensus 1058 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~ 1137 (1293)
||++++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|++++.|+|+||+++ ++.
T Consensus 488 Rall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~g~ 566 (574)
T PRK11160 488 RALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ-QGR 566 (574)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc-CcH
Confidence 9999999999999999999999999999999998889999999999999999999999999999999999999975 567
Q ss_pred HHHHHH
Q 000774 1138 FSKMVQ 1143 (1293)
Q Consensus 1138 ~~~l~~ 1143 (1293)
|+++++
T Consensus 567 y~~l~~ 572 (574)
T PRK11160 567 YYQLKQ 572 (574)
T ss_pred HHHHHh
Confidence 887765
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-69 Score=687.33 Aligned_cols=536 Identities=24% Similarity=0.344 Sum_probs=433.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 587 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF--YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 664 (1293)
Q Consensus 587 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 664 (1293)
.+...+++.++..++....|.++...+|........... +...+.++.++..++.+++.++....+.+...+++..++
T Consensus 148 ~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 227 (694)
T TIGR03375 148 LYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLF 227 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777788888888777754322221111 222333445567788889999999999999999999999
Q ss_pred HHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 665 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 744 (1293)
Q Consensus 665 ~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 744 (1293)
++++++|+.| +++++|++++|+ +|++.+++.+...+...+..+..++..++++++++|.+.++.+..+++++.+..++
T Consensus 228 ~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~ 305 (694)
T TIGR03375 228 ERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLL 305 (694)
T ss_pred HHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 788999999999 79999999887776666666666777777778888877666655555555555555
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 000774 745 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM--- 821 (1293)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 821 (1293)
.+..++..+......+...+.+.|+++|+++||+|+.++.+.+++.+..+...+..........+......++..+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (694)
T TIGR03375 306 QRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVA 385 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566667778889999999999999999999998888888877766665555444444433333332222
Q ss_pred HHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCC
Q 000774 822 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 901 (1293)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~ 901 (1293)
+++.+.+. +..+..+ .+.+..++.+...+..++..+...+..++....+.+|+.++++.++|.+.. .....
T Consensus 386 il~~g~~~-v~~g~ls-----~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~---~~~~~ 456 (694)
T TIGR03375 386 IVVVGVYL-ISDGELT-----MGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG---TRFLH 456 (694)
T ss_pred HHHHHHHH-HHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCCC
Confidence 22222222 2344444 455555666777788888999999999999999999999999877653211 11111
Q ss_pred CCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH
Q 000774 902 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 981 (1293)
Q Consensus 902 ~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 981 (1293)
..+..+.|+++||+|+|++..+++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|.+||.|++++++.+
T Consensus 457 ~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~ 536 (694)
T TIGR03375 457 RPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPAD 536 (694)
T ss_pred CCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHH
Confidence 11234679999999999765557999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhceEEccccccccccHhhhcCCCCC-CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 982 LRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 982 ~r~~i~~v~Q~~~lf~~ti~~nl~~~~~-~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
+|++|+||||+|.+|++||+|||.+..+ .++++++++++.++++++++++|+|+||.+++.|.+|||||||||+||||+
T Consensus 537 lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARal 616 (694)
T TIGR03375 537 LRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARAL 616 (694)
T ss_pred HHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999997754 689999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhc
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
+++|+|||||||||+||+++++.+++.|.+..+++|+|+||||++++..||+|++|++|++++.|+|+||+++
T Consensus 617 l~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 617 LRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 9999999999999999999999999999998889999999999999999999999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=673.72 Aligned_cols=543 Identities=22% Similarity=0.311 Sum_probs=439.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCch-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 591 LLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL-FY-NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 668 (1293)
Q Consensus 591 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll 668 (1293)
.+++.++...+....++++....+.......... .+ ...+.++.++..++.++..++....+.+....++..++++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~ 109 (582)
T PRK11176 30 AGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMM 109 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555566666666554332111111 11 222334556677777888888888999999999999999999
Q ss_pred cCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 669 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTA 748 (1293)
Q Consensus 669 ~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 748 (1293)
+.|..+|++.+.|++++|+++|++.+...+...+..++..++.+++.++++++++|.+.++++..+++.+++...+.+..
T Consensus 110 ~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~ 189 (582)
T PRK11176 110 GMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRF 189 (582)
T ss_pred cCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888888888888888888888888877666555555555555555555
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 749 REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATF 828 (1293)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1293)
++..+......+...+.+.|.++|++++|+|+.++.+.+++.+..+...+..........+......++..+...++.++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (582)
T PRK11176 190 RNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYA 269 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556667788899999999999999999999999999888888877776666555555555555443333222222
Q ss_pred H--HHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCCCCCCC
Q 000774 829 A--VVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSS 906 (1293)
Q Consensus 829 ~--~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~~~~~~ 906 (1293)
. .+..+..+ .+.+..++++...+..++..+...+..++....+.+|+.++.+.+++.+.. ... ..+..
T Consensus 270 g~~~~~~g~is-----~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~---~~~--~~~~~ 339 (582)
T PRK11176 270 ASFPSVMDTLT-----AGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG---KRV--IERAK 339 (582)
T ss_pred HHHHHHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC---CcC--CCCCC
Confidence 1 12334444 455555666777788889999999999999999999999998766542211 011 11234
Q ss_pred ccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhc
Q 000774 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 986 (1293)
Q Consensus 907 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 986 (1293)
+.|+++||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|++||.|+++++.+++|++|
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 419 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQV 419 (582)
T ss_pred CeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhc
Confidence 56999999999976545799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEccccccccccHhhhcCCCC--CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 987 GIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 987 ~~v~Q~~~lf~~ti~~nl~~~~--~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
+||||+|.+|++||++||.+.. ..++++++++++.++++++++++|.|+||.+++.|.+||||||||++|||||+++|
T Consensus 420 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~ 499 (582)
T PRK11176 420 ALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_pred eEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999998653 36899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChHHHHHHh
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1144 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~l~~~ 1144 (1293)
+|||||||||+||+++++.+.+.|.+..+++|+|+||||++.+..||+|++|++|++++.|+|++++++ ++.|++++..
T Consensus 500 ~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~ 578 (582)
T PRK11176 500 PILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKM 578 (582)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHHH
Confidence 999999999999999999999999998788999999999999999999999999999999999999976 4678877753
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-71 Score=691.83 Aligned_cols=485 Identities=22% Similarity=0.326 Sum_probs=352.1
Q ss_pred CcEEEEeeEEEcCCCC-CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------
Q 000774 283 PAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 346 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~-~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~--------------- 346 (1293)
+.|+++|++++|+... +.++|+||||+|++||++||+|+||||||||+++|+|+++|++|....
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 4699999999996322 347999999999999999999999999999999999999998874321
Q ss_pred ----------ec-CcEEEEcCCc--ccc-CccHHHHHccCC----CCCH----HHHHHHHHHcCChhHHhcCCCCCcccc
Q 000774 347 ----------IR-GTVAYVPQVS--WIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEI 404 (1293)
Q Consensus 347 ----------~~-~~i~~v~Q~~--~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~i 404 (1293)
.+ ..||||+|+| .++ ..||.|||.++. ..+. +++.++++..++.+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 11 3699999998 465 479999998752 1122 234455666665321 0112
Q ss_pred cCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEE
Q 000774 405 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILV 482 (1293)
Q Consensus 405 g~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l 482 (1293)
.....+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.+.+...+ |+|+|+|||+++++. .||||++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 3445689999999999999999999999999999999999999998865554333 899999999999986 48999999
Q ss_pred eCCeEEEecChHHHhhccH-HHH-HHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccccccch
Q 000774 483 HEGMVKEEGTFEDLSNNGE-LFQ-KLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLI 560 (1293)
Q Consensus 483 ~~G~i~~~g~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1293)
++|++++.|+++++..... .|. .+... .|...
T Consensus 243 ~~G~i~~~g~~~~~~~~~~~~~~~~l~~~--------------------------------~~~~~-------------- 276 (623)
T PRK10261 243 YQGEAVETGSVEQIFHAPQHPYTRALLAA--------------------------------VPQLG-------------- 276 (623)
T ss_pred eCCeecccCCHHHhhcCCCChhhhhhhhc--------------------------------cCccc--------------
Confidence 9999999999877643210 000 00000 00000
Q ss_pred hhhhhhcCcccHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHH
Q 000774 561 KQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLV 640 (1293)
Q Consensus 561 ~~~~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 640 (1293)
.+...
T Consensus 277 --------------------------------------------------~~~~~------------------------- 281 (623)
T PRK10261 277 --------------------------------------------------AMKGL------------------------- 281 (623)
T ss_pred --------------------------------------------------ccccc-------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 641 TLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIG 720 (1293)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1293)
..+ +. .
T Consensus 282 ----------------------------~~~---------~~----~--------------------------------- 287 (623)
T PRK10261 282 ----------------------------DYP---------RR----F--------------------------------- 287 (623)
T ss_pred ----------------------------cCC---------cc----c---------------------------------
Confidence 000 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 000774 721 IVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYT 800 (1293)
Q Consensus 721 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~ 800 (1293)
+.
T Consensus 288 ----------------------------------------~~-------------------------------------- 289 (623)
T PRK10261 288 ----------------------------------------PL-------------------------------------- 289 (623)
T ss_pred ----------------------------------------cc--------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 801 LVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERV 880 (1293)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl 880 (1293)
.. ...++.
T Consensus 290 -----------------------------------~~-------------------------------------~~~~~~ 297 (623)
T PRK10261 290 -----------------------------------IS-------------------------------------LEHPAK 297 (623)
T ss_pred -----------------------------------cc-------------------------------------cccccc
Confidence 00 000000
Q ss_pred hhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEecCC---------CCCceeeeeEEecCCCEEEEEcCCCCCHHH
Q 000774 881 GNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSS 951 (1293)
Q Consensus 881 ~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~---------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKST 951 (1293)
. . +.... .. .. +....++++|+++.|+.. ..++|+||||+|++||++||+|+|||||||
T Consensus 298 ~---~-~~~~~----~~-~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKST 365 (623)
T PRK10261 298 Q---E-PPIEQ----DT-VV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKST 365 (623)
T ss_pred c---C-ccccc----cc-cc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHH
Confidence 0 0 00000 00 00 011248999999999621 135899999999999999999999999999
Q ss_pred HHHHHhcCCCCCcceEEECCeecCCCChH---HHhhhceEEcccc--cccc-ccHhhhcCCC---CCC-CHHHHHHHHHH
Q 000774 952 MLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKILGIIPQSP--VLFS-GTVRFNLDPF---SEH-SDADLWEALER 1021 (1293)
Q Consensus 952 ll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~i~~v~Q~~--~lf~-~ti~~nl~~~---~~~-~~~~~~~~l~~ 1021 (1293)
|+++|+|+++|++|+|.++|.++...+.. .+|++|+||||++ .++. .|+.+|+... ... ...+. .
T Consensus 366 Llk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~-----~ 440 (623)
T PRK10261 366 TGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAA-----A 440 (623)
T ss_pred HHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHH-----H
Confidence 99999999999999999999999876643 3567899999998 4665 4999998531 111 11111 1
Q ss_pred hhHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEE
Q 000774 1022 AHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTML 1098 (1293)
Q Consensus 1022 ~~l~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi 1098 (1293)
..+.+.++.+ |++ ........+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ +.|||
T Consensus 441 ~~~~~~L~~~--gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi 518 (623)
T PRK10261 441 ARVAWLLERV--GLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYL 518 (623)
T ss_pred HHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 1233444443 453 345666788999999999999999999999999999999999999999999988653 68999
Q ss_pred EEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCCChHH
Q 000774 1099 IIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1139 (1293)
Q Consensus 1099 ~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1139 (1293)
+||||++.+.. ||||++|++|+|++.|+++++.......|.
T Consensus 519 ~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~ 560 (623)
T PRK10261 519 FISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYT 560 (623)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHH
Confidence 99999999877 999999999999999999999865444454
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-69 Score=686.15 Aligned_cols=492 Identities=21% Similarity=0.280 Sum_probs=421.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHH
Q 000774 13 YAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTL 91 (1293)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~ 91 (1293)
++++++++.++..++.....+...+++.++...++..+|+|++++|..++++.++|+++++++ |++.+++++ ..+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~ 256 (686)
T TIGR03797 178 IALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTT 256 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHH
Confidence 344444455556666766777778899999999999999999999999999999999999997 799998865 334444
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 000774 92 WSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSF 171 (1293)
Q Consensus 92 ~~~~~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~ 171 (1293)
+...+.++++++++++..+++++++++++++++++..++.++.++..++.++..+++.+.+.|.++|+++||.++.|+.+
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 336 (686)
T TIGR03797 257 LLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRA 336 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHH
Confidence 54555556677777888888888888887777778888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 172 QSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV--LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMIT 249 (1293)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~ 249 (1293)
.+++++..++..+...+......+...+...+.. .+.++++|++.+..|.+|.|.++++..++..+..|+..++..+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~ 416 (686)
T TIGR03797 337 FARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLI 416 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888777766666665555544444332 23455678888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHH
Q 000774 250 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL 329 (1293)
Q Consensus 250 ~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTL 329 (1293)
.++++..+++|+.++++.+++..............|+++||+|+|++ .++++|+|+||+|++||++||||+||||||||
T Consensus 417 ~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL 495 (686)
T TIGR03797 417 SILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRP-DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTL 495 (686)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEcCC-CCccceeeeEEEECCCCEEEEECCCCCCHHHH
Confidence 99999999999999998765432111111112246999999999974 35789999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCce------------eecCcEEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCC
Q 000774 330 ISAMLGELPPVSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLP 397 (1293)
Q Consensus 330 l~~l~g~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~ 397 (1293)
+++|+|+++|++|... .+|+.||||||+|++|++||+|||.++++.++++++++++.++++++++.+|
T Consensus 496 lklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp 575 (686)
T TIGR03797 496 LRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMP 575 (686)
T ss_pred HHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhcc
Confidence 9999999999998432 1356799999999999999999999998888899999999999999999999
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCC
Q 000774 398 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVD 477 (1293)
Q Consensus 398 ~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d 477 (1293)
+|++|.+||+|.+|||||||||+|||||+++|++||||||||+||+++++.+.+.+.+. ++|+|+||||++.++.||
T Consensus 576 ~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D 652 (686)
T TIGR03797 576 MGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNAD 652 (686)
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999876543 589999999999999999
Q ss_pred eEEEEeCCeEEEecChHHHhhccHHHHHHHHH
Q 000774 478 RIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 509 (1293)
Q Consensus 478 ~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 509 (1293)
+|++|++|++++.|+|+++++.++.|++++..
T Consensus 653 ~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~ 684 (686)
T TIGR03797 653 RIYVLDAGRVVQQGTYDELMAREGLFAQLARR 684 (686)
T ss_pred EEEEEECCEEEEECCHHHHHhCCcHHHHHHHh
Confidence 99999999999999999999999999988764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=623.56 Aligned_cols=506 Identities=25% Similarity=0.334 Sum_probs=428.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHH
Q 000774 626 YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF 705 (1293)
Q Consensus 626 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~ 705 (1293)
+...+.++.++..++.+.+.......+.++...+|..+++++.+++..+-+..++|++.+.++..++.++.++..++...
T Consensus 42 ~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~ 121 (559)
T COG4988 42 LLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQM 121 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666778888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHH
Q 000774 706 MGQVSQLLSTFVLIGIVSTMSLWA---IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 782 (1293)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~ 782 (1293)
+...+..+..++.+++.+|...++ .+|++++++.+ .....+...+..-.....+.++|.|.++|+.|+|.|+..
T Consensus 122 ~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil---vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~ 198 (559)
T COG4988 122 FLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL---VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRT 198 (559)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhccc
Confidence 999888888888888888876554 44555544433 333344444445556678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hc-CcccchhhhHHHHHHHHHHHHHHHHH
Q 000774 783 DRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVV--QN-GSAENQEAFASTMGLLLSYALNITSL 859 (1293)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~g~~l~~~~~~~~~ 859 (1293)
+...++..+...+..+.++.........+..++++..+.+.+++.+..+ .. |..+ .+.+. +++..+.-++.|
T Consensus 199 ~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~lt---l~~~l--~~LiLAPEff~P 273 (559)
T COG4988 199 EATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLT---LFAGL--FVLILAPEFFQP 273 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc---HHHHH--HHHHHhHHHHHH
Confidence 9999999998888888888888888888888999888777776666543 22 2222 22222 233345567778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEE
Q 000774 860 LTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKV 939 (1293)
Q Consensus 860 ~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v 939 (1293)
+..+...+....+...+.+.+..+.+.|.+.+...+. ....+.....++++|++++|+++. ++++|+||++++|+++
T Consensus 274 lR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~--~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~t 350 (559)
T COG4988 274 LRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEK--AEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLT 350 (559)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccc--cccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEE
Confidence 8888888888888888889999888876654322111 111122233466679999998654 7999999999999999
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEEccccccccccHhhhcCCCCC-CCHHHHHHH
Q 000774 940 GIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEA 1018 (1293)
Q Consensus 940 ~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~-~~~~~~~~~ 1018 (1293)
||||+||||||||+++|+|+++|++|+|.+||++++++++..+|+++++|||+|++|++|+||||.+++. .+|+++.++
T Consensus 351 alvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~a 430 (559)
T COG4988 351 ALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAA 430 (559)
T ss_pred EEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998765 689999999
Q ss_pred HHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Q 000774 1019 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 1098 (1293)
Q Consensus 1019 l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi 1098 (1293)
++.+++.++++. |+|+|+.++++|.+|||||+|||+|||||+++++++|+||||++||.+|++.|.+.|.+..+++|||
T Consensus 431 l~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl 509 (559)
T COG4988 431 LDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVL 509 (559)
T ss_pred HHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEE
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChHHHHHHh
Q 000774 1099 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1144 (1293)
Q Consensus 1099 ~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~l~~~ 1144 (1293)
+||||++.+.+||+|+||++|++++.|+|++|.++ .+.|++|+..
T Consensus 510 ~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~ 554 (559)
T COG4988 510 VITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQ 554 (559)
T ss_pred EEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHH
Confidence 99999999999999999999999999999999875 5678888765
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-68 Score=710.49 Aligned_cols=307 Identities=18% Similarity=0.271 Sum_probs=225.2
Q ss_pred ccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhc
Q 000774 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 986 (1293)
Q Consensus 907 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 986 (1293)
..|+++|++++|++...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+ +....|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 4599999999997533469999999999999999999999999999999999999999999999999865 456678899
Q ss_pred eEEccccccccc-cHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 987 GIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 987 ~~v~Q~~~lf~~-ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
|||||++.++.. |++|||.++. ....+++.+. ..+.++. .|++...+.....|||||||||+|||||+.
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~-----v~~lLe~--lgL~~~~dk~~~~LSGGqKqRLslA~ALi~ 2087 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKV-----ANWSIQS--LGLSLYADRLAGTYSGGNKRKLSTAIALIG 2087 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHH--cCCHHHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999998865 9999996532 1222222211 2233333 255555666677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCCChHHH
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 1140 (1293)
+|+||+|||||+|||+.+++.+++.|++.. +++|||++||++++++. ||||++|++|++++.|++++++++.+..|.-
T Consensus 2088 ~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~g~~l 2167 (2272)
T TIGR01257 2088 CPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIV 2167 (2272)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCCceEE
Confidence 999999999999999999999999999864 57999999999999987 9999999999999999999998766543321
Q ss_pred HHHhhccch-----HHHHHHhhccCcchhhhhhhhhcccccccchhhchhHHHHHHHHHHhhccccchhhhccccchhhH
Q 000774 1141 MVQSTGAAN-----AQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNI 1215 (1293)
Q Consensus 1141 l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1215 (1293)
.+....... ............+..... + .....+... +......+....
T Consensus 2168 ~i~~~~~~~~~~~~~~~v~~~i~~~fp~a~~~-e--~~~~~l~~~-----------------------i~~~~~~~if~~ 2221 (2272)
T TIGR01257 2168 TMKIKSPKDDLLPDLNPVEQFFQGNFPGSVQR-E--RHYNMLQFQ-----------------------VSSSSLARIFQL 2221 (2272)
T ss_pred EEEEcCcchhhhhHHHHHHHHHhhcCccceee-c--cccceEEEE-----------------------eCcccHHHHHHH
Confidence 000000000 000000000000000000 0 000000000 001134567788
Q ss_pred hhhchhhH-HHHHHhhccCCchhhHhhhccccc
Q 000774 1216 LKKTKDAV-VTLQGVLEGKHDKEIEESLNQHEV 1247 (1293)
Q Consensus 1216 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1247 (1293)
||+.|..+ +..|++++++||+||++..++...
T Consensus 2222 L~~~k~~l~I~dysvsqtSLE~VFl~l~~~q~~ 2254 (2272)
T TIGR01257 2222 LISHKDSLLIEEYSVTQTTLDQVFVNFAKQQTE 2254 (2272)
T ss_pred HHhcCCCCCeEEEEcCCCCHHHHHHHHhccccc
Confidence 89888777 889999999999999999876543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-68 Score=683.10 Aligned_cols=490 Identities=22% Similarity=0.304 Sum_probs=423.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHH
Q 000774 13 YAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTL 91 (1293)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~ 91 (1293)
++++++++.++..++.....+...+++.++...++..+|+|++++|..++++.++|+++++++.| +.+++++ ..+..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~ 274 (710)
T TIGR03796 196 LLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATT 274 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHH
Confidence 33444445556666677777778889999999999999999999999999999999999999988 6788765 456666
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 000774 92 WSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSF 171 (1293)
Q Consensus 92 ~~~~~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~ 171 (1293)
+...+.+++++++++...|+++++.++.+++.+.+..++.++..+..++.++..++..+.+.|.++|+++||.+++|+.+
T Consensus 275 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 354 (710)
T TIGR03796 275 ALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDF 354 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHH
Confidence 66777777777888888888888888888887778888888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 172 QSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV--LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMIT 249 (1293)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~ 249 (1293)
.+++.+...+..+...+......+...+...+.. .+.++++|++.+..|.+|+|.++++..++..+..|+..++..+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~ 434 (710)
T TIGR03796 355 FSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGG 434 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888887766666555555444444332 23456778888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccCCC------CCC--CCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcC
Q 000774 250 QVVNANVSLKRMEEFLLAEEKILLPN------PPL--TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGG 321 (1293)
Q Consensus 250 ~~~~~~~s~~Ri~~~l~~~~~~~~~~------~~~--~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~ 321 (1293)
.++++..+++|+.++++.+++..... ... ......|+++||+|+|++ .++++|+|+||+|++||++||||+
T Consensus 435 ~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~-~~~~vL~~isl~i~~Ge~vaIvG~ 513 (710)
T TIGR03796 435 TLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSP-LEPPLIENFSLTLQPGQRVALVGG 513 (710)
T ss_pred HHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCC-CCCCcccceeEEEcCCCEEEEECC
Confidence 99999999999999998765432111 001 111346999999999974 357899999999999999999999
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEcCCccccCccHHHHHccCC-CCCHHHHHHHHHHcC
Q 000774 322 TGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGS-AFEPARYEKAIDVTS 388 (1293)
Q Consensus 322 ~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~g~-~~~~~~~~~~~~~~~ 388 (1293)
||||||||+++|+|+++|++|.... +|+.||||||+|++|++||+|||.++. +.++++++++++.++
T Consensus 514 sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~ 593 (710)
T TIGR03796 514 SGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAA 593 (710)
T ss_pred CCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhC
Confidence 9999999999999999999984321 366899999999999999999999886 478899999999999
Q ss_pred ChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 000774 389 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 468 (1293)
Q Consensus 389 l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH 468 (1293)
++++++.+|+|++|.+||+|.+|||||||||+|||||+++|+|||||||||+||+++++.+.+.+.+ .++|+|+|||
T Consensus 594 l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitH 670 (710)
T TIGR03796 594 IHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAH 670 (710)
T ss_pred CHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999987754 4799999999
Q ss_pred CcchhhhCCeEEEEeCCeEEEecChHHHhhccHHHHHHH
Q 000774 469 QLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 507 (1293)
Q Consensus 469 ~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 507 (1293)
|++.+..||+|++|++|++++.|+|+++++.++.|++++
T Consensus 671 rl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 671 RLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred CHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 999999999999999999999999999999888888775
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-70 Score=674.82 Aligned_cols=449 Identities=20% Similarity=0.306 Sum_probs=340.8
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CCCCcee-------------ec
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAV-------------IR 348 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~--~~g~~~~-------------~~ 348 (1293)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|.... .+
T Consensus 5 ~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeC---CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 599999999996 35799999999999999999999999999999999999986 6774321 12
Q ss_pred CcEEEEcCCcccc-CccHHHHHccCCC------CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHH
Q 000774 349 GTVAYVPQVSWIF-NATVRDNILFGSA------FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 417 (1293)
Q Consensus 349 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~------~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkq 417 (1293)
..+|||+|++.++ ..|++||+.++.. .+. +++.++++..++.+. ......+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN-----------PATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHHHHH
Confidence 4599999999886 5699999988632 121 223334444443221 23345689999999
Q ss_pred HHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHH
Q 000774 418 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 496 (1293)
Q Consensus 418 RialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 496 (1293)
|++|||||+.+|++|||||||++||+.+..++++.+.+...+|+|+|+|||+++++.. ||+|++|++|+++..|+.+++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999998766555568999999999999875 899999999999987654332
Q ss_pred hhccHHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccccccchhhhhhhcCcccHHHHH
Q 000774 497 SNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLS 576 (1293)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 576 (1293)
.... .
T Consensus 231 ~~~~-----~---------------------------------------------------------------------- 235 (506)
T PRK13549 231 TEDD-----I---------------------------------------------------------------------- 235 (506)
T ss_pred CHHH-----H----------------------------------------------------------------------
Confidence 1000 0
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 577 RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAA 656 (1293)
Q Consensus 577 ~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 656 (1293)
..
T Consensus 236 --~~---------------------------------------------------------------------------- 237 (506)
T PRK13549 236 --IT---------------------------------------------------------------------------- 237 (506)
T ss_pred --HH----------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 657 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 736 (1293)
Q Consensus 657 ~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 736 (1293)
++
T Consensus 238 -----------------------------~~------------------------------------------------- 239 (506)
T PRK13549 238 -----------------------------MM------------------------------------------------- 239 (506)
T ss_pred -----------------------------Hh-------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 737 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 816 (1293)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1293)
+ +
T Consensus 240 -------~-----------------------------------~------------------------------------ 241 (506)
T PRK13549 240 -------V-----------------------------------G------------------------------------ 241 (506)
T ss_pred -------h-----------------------------------C------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCC
Q 000774 817 VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES 896 (1293)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~ 896 (1293)
... ... .+...
T Consensus 242 -----------------~~~--------------------------------------------~~~--~~~~~------ 252 (506)
T PRK13549 242 -----------------REL--------------------------------------------TAL--YPREP------ 252 (506)
T ss_pred -----------------cCc--------------------------------------------ccc--ccccc------
Confidence 000 000 00000
Q ss_pred CCCCCCCCCCccEEEEEEEEEecC-CCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC-CCcceEEECCeec
Q 000774 897 NRPPPGWPSSGSIKFEDVVLRYRP-ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LERGRILIDGFDI 974 (1293)
Q Consensus 897 ~~~~~~~~~~g~i~~~~v~~~y~~-~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-p~~G~I~i~g~~i 974 (1293)
+. +....|+++|++++|+. +..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 253 --~~---~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~ 327 (506)
T PRK13549 253 --HT---IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPV 327 (506)
T ss_pred --cC---CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEEC
Confidence 00 01124899999999942 12369999999999999999999999999999999999999 5999999999998
Q ss_pred CCCCh-HHHhhhceEEcccc---cccc-ccHhhhcCCCC--CCCH-HHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCC
Q 000774 975 AKFGL-MDLRKILGIIPQSP---VLFS-GTVRFNLDPFS--EHSD-ADLWEALERAHLKDAIRRNSLGLD-AQVSEAGEN 1045 (1293)
Q Consensus 975 ~~~~~-~~~r~~i~~v~Q~~---~lf~-~ti~~nl~~~~--~~~~-~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~ 1045 (1293)
...+. ...++.++|+||++ .+|. .|+.+|+.+.. .... ..+........+.+.++.+ +++ ...+....+
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~ 405 (506)
T PRK13549 328 KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRL--KVKTASPELAIAR 405 (506)
T ss_pred CCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhc--CccCCCccccccc
Confidence 65543 34566799999996 3564 59999996421 1100 0000001112344556654 443 235566788
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEee
Q 000774 1046 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1123 (1293)
Q Consensus 1046 LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 1123 (1293)
||||||||++|||||+.+|+||||||||++||+.+.+.+++.|+++. +++|||+||||++++.. |||+++|++|+++.
T Consensus 406 LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~ 485 (506)
T PRK13549 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKG 485 (506)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999864 47899999999999877 99999999999999
Q ss_pred ecChhhhh
Q 000774 1124 YDTPEELL 1131 (1293)
Q Consensus 1124 ~g~~~el~ 1131 (1293)
.|+++++.
T Consensus 486 ~~~~~~~~ 493 (506)
T PRK13549 486 DLINHNLT 493 (506)
T ss_pred EeccccCC
Confidence 99888763
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-67 Score=672.78 Aligned_cols=560 Identities=22% Similarity=0.312 Sum_probs=444.8
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCC-Cch-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 572 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GPL-FYNTIYSLLSFGQVLVTLANSYWLI 649 (1293)
Q Consensus 572 ~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~~~~~ 649 (1293)
+..++++++.. ...+...+++.++..++....|.++...+|....... ... .+...+.++.++..++.+++.++..
T Consensus 127 ~~~~~~~~~~~--~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~ 204 (694)
T TIGR01846 127 FSWFIPAIIRY--RKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFA 204 (694)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444322 2233445555566666677778888777765432221 111 1233444555667788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 650 ISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 729 (1293)
Q Consensus 650 ~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1293)
..+.+...+++.+++++++++|+.||++.++|++++|+ +|++.+++.+...+...+..+...+..++++++++|.+.++
T Consensus 205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 283 (694)
T TIGR01846 205 HLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGV 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 69999999887766666666666666677788888887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 730 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW 809 (1293)
Q Consensus 730 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (1293)
++..++++..+...+.+..++..+......+...+.+.|+++|+++||+++.++.+.+++.+..+...+..........+
T Consensus 284 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR01846 284 VIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNI 363 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555544444444444444444455667889999999999999999999999888888887777666665555555
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 000774 810 LAIRLEIVGGLMIWLTATF--AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 887 (1293)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~ 887 (1293)
......++..+...++.++ ..+..+..+ .+.+..+..+...+..++..+......++....+.+|+.++++.+
T Consensus 364 ~~~~~~~i~~~~~~~il~~g~~lv~~g~it-----~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~ 438 (694)
T TIGR01846 364 AGQAIELIQKLTFAILLWFGAHLVIGGALS-----PGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSP 438 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5444444433222222211 112344444 444555666777788889999999999999999999999999877
Q ss_pred CCCccccCCCCCCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceE
Q 000774 888 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 967 (1293)
Q Consensus 888 ~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I 967 (1293)
+|.... ...+. ....+.|+++||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|
T Consensus 439 ~e~~~~--~~~~~--~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I 514 (694)
T TIGR01846 439 TEPRSA--GLAAL--PELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV 514 (694)
T ss_pred CCccCC--CCCCC--CCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 653211 10011 12246799999999997655579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCChHHHhhhceEEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCC
Q 000774 968 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 1046 (1293)
Q Consensus 968 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~L 1046 (1293)
.+||.|+++++..++|++|+||||++.+|++|++|||.... +.++++++++++.++++++++++|.|+||.+++.|.+|
T Consensus 515 ~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~L 594 (694)
T TIGR01846 515 LVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANL 594 (694)
T ss_pred EECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCC
Confidence 99999999999999999999999999999999999998754 46789999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecC
Q 000774 1047 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1126 (1293)
Q Consensus 1047 SgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~ 1126 (1293)
|||||||++|||||+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++++..||+|++|++|++++.|+
T Consensus 595 SgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~ 674 (694)
T TIGR01846 595 SGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGR 674 (694)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999878899999999999999999999999999999999
Q ss_pred hhhhhhcCCChHHHHHHh
Q 000774 1127 PEELLSNEGSSFSKMVQS 1144 (1293)
Q Consensus 1127 ~~el~~~~~~~~~~l~~~ 1144 (1293)
|+|++++ ++.|++++..
T Consensus 675 ~~~l~~~-~~~y~~l~~~ 691 (694)
T TIGR01846 675 HEELLAL-QGLYARLWQQ 691 (694)
T ss_pred HHHHHHc-CChHHHHHHh
Confidence 9999975 4778887754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-70 Score=675.90 Aligned_cols=454 Identities=23% Similarity=0.382 Sum_probs=344.0
Q ss_pred cEEEEeeEEEcCCC-CCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CCCCcee-----------
Q 000774 284 AISIRNGYFSWDSK-AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAV----------- 346 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~-~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~-----~~g~~~~----------- 346 (1293)
.++++|++++|+.+ .++++|+|+||+|++||++||+||||||||||+++|+|+++| ++|....
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 58999999999631 135799999999999999999999999999999999999986 5774211
Q ss_pred ----ec-CcEEEEcCCcc--cc-CccHHHHHccCC----CCC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCC
Q 000774 347 ----IR-GTVAYVPQVSW--IF-NATVRDNILFGS----AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 410 (1293)
Q Consensus 347 ----~~-~~i~~v~Q~~~--l~-~~Tv~eni~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~ 410 (1293)
.+ ..|||++|++. ++ ..|+.+|+.++. ..+ .+++.++++..++.+... .......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 11 36999999985 43 469999986421 111 134455666666643111 11234468
Q ss_pred CChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEeCCeEE
Q 000774 411 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVK 488 (1293)
Q Consensus 411 LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~ 488 (1293)
|||||||||+|||||+.+|++|||||||++||+.+.+++.+.+.+...+ |+|+|+|||+++.+. .||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999866554443 899999999999986 48999999999999
Q ss_pred EecChHHHhhccHHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccccccchhhhhhhcC
Q 000774 489 EEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETG 568 (1293)
Q Consensus 489 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 568 (1293)
+.|+++++......
T Consensus 237 ~~g~~~~~~~~~~~------------------------------------------------------------------ 250 (529)
T PRK15134 237 EQNRAATLFSAPTH------------------------------------------------------------------ 250 (529)
T ss_pred EeCCHHHHhhCCCC------------------------------------------------------------------
Confidence 98877654311000
Q ss_pred cccHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 569 VVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWL 648 (1293)
Q Consensus 569 ~~~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 648 (1293)
.+.+
T Consensus 251 --------~~~~-------------------------------------------------------------------- 254 (529)
T PRK15134 251 --------PYTQ-------------------------------------------------------------------- 254 (529)
T ss_pred --------HHHH--------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 649 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 728 (1293)
Q Consensus 649 ~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1293)
.
T Consensus 255 -----------------------------------------------~-------------------------------- 255 (529)
T PRK15134 255 -----------------------------------------------K-------------------------------- 255 (529)
T ss_pred -----------------------------------------------H--------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 729 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 808 (1293)
Q Consensus 729 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 (1293)
++. . .
T Consensus 256 --------------~~~----------~---~------------------------------------------------ 260 (529)
T PRK15134 256 --------------LLN----------S---E------------------------------------------------ 260 (529)
T ss_pred --------------HHH----------h---C------------------------------------------------
Confidence 000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 000774 809 WLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 888 (1293)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~ 888 (1293)
.+. . +
T Consensus 261 ---------------------------------------------------------------------~~~----~-~- 265 (529)
T PRK15134 261 ---------------------------------------------------------------------PSG----D-P- 265 (529)
T ss_pred ---------------------------------------------------------------------ccc----c-c-
Confidence 000 0 0
Q ss_pred CCccccCCCCCCCCCCCCccEEEEEEEEEecC---------CCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcC
Q 000774 889 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 889 e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~---------~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~ 959 (1293)
... +. +....++++|++++|+. +..++|+|+||+|++||++||+||||||||||+++|+|+
T Consensus 266 ~~~-------~~---~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 335 (529)
T PRK15134 266 VPL-------PE---PASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL 335 (529)
T ss_pred ccc-------CC---CCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 000 00 00113899999999952 123699999999999999999999999999999999999
Q ss_pred CCCCcceEEECCeecCCCChHH---HhhhceEEcccc--cccc-ccHhhhcCCCC----C-CCHHHHHHHHHHhhHHHHH
Q 000774 960 VELERGRILIDGFDIAKFGLMD---LRKILGIIPQSP--VLFS-GTVRFNLDPFS----E-HSDADLWEALERAHLKDAI 1028 (1293)
Q Consensus 960 ~~p~~G~I~i~g~~i~~~~~~~---~r~~i~~v~Q~~--~lf~-~ti~~nl~~~~----~-~~~~~~~~~l~~~~l~~~i 1028 (1293)
+ |++|+|.++|.++...+... +|++++|+||++ .+|. .|+++|+.+.. . ....+. ...+.+++
T Consensus 336 ~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~l 409 (529)
T PRK15134 336 I-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQR-----EQQVIAVM 409 (529)
T ss_pred C-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHH-----HHHHHHHH
Confidence 8 58999999999987765443 467899999998 3665 49999986311 0 111111 11233445
Q ss_pred HHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcc
Q 000774 1029 RRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLN 1105 (1293)
Q Consensus 1029 ~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~ 1105 (1293)
+.+ |+. ........+||||||||++|||||+.+|++|||||||++||+.+.+.+++.|+++.+ ++|||+||||++
T Consensus 410 ~~~--~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~ 487 (529)
T PRK15134 410 EEV--GLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH 487 (529)
T ss_pred HHc--CCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 543 554 345667788999999999999999999999999999999999999999999998753 789999999999
Q ss_pred hhhc-cCEEEEEeCCeEeeecChhhhhhcC
Q 000774 1106 TIID-CDRILLLDSGRVLEYDTPEELLSNE 1134 (1293)
Q Consensus 1106 ~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1134 (1293)
.+.. ||||++|++|++++.|+++++.+..
T Consensus 488 ~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 517 (529)
T PRK15134 488 VVRALCHQVIVLRQGEVVEQGDCERVFAAP 517 (529)
T ss_pred HHHHhcCeEEEEECCEEEEEcCHHHHhcCC
Confidence 9876 9999999999999999999997543
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-67 Score=659.88 Aligned_cols=547 Identities=23% Similarity=0.355 Sum_probs=452.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 586 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF--YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAM 663 (1293)
Q Consensus 586 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 663 (1293)
+.+++.+++.++...+....++++....+........... +..++.++.++..++.+++.++....+.+....++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l 93 (571)
T TIGR02203 14 AGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRM 93 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666667777777777776665543221111111 23345566677788889999999999999999999999
Q ss_pred HHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 664 LHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLY 743 (1293)
Q Consensus 664 ~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 743 (1293)
++++++.|..+|++.+.|++++|+++|++.++..+...+..++..++.++..++++++++|.+.+++++++++.+.+...
T Consensus 94 ~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~ 173 (571)
T TIGR02203 94 FEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRR 173 (571)
T ss_pred HHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888888888899999999999998887777766666666666
Q ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 744 YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW 823 (1293)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1293)
+.+..++..+......++..+.+.|.++|+.++|+++.++++.+++.+..+...+..........+......++..+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (571)
T TIGR02203 174 VSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALA 253 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666777778889999999999999999999999988888888877776666555555555444444332222
Q ss_pred HHHHH--HHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCC
Q 000774 824 LTATF--AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 901 (1293)
Q Consensus 824 ~~~~~--~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~ 901 (1293)
++.++ ..+..+..+ .+.+..+..+...+..++..+......+.....+.+|+.++++.+++.+.. ..+.
T Consensus 254 ~~~~~g~~~~~~g~lt-----~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~- 324 (571)
T TIGR02203 254 VVLFIALFQAQAGSLT-----AGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAI- 324 (571)
T ss_pred HHHHHHHHHHHcCCCC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCC-
Confidence 22111 123344444 555666667777888899999999999999999999999998765543211 1111
Q ss_pred CCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH
Q 000774 902 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 981 (1293)
Q Consensus 902 ~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 981 (1293)
.+..+.|+++||+|+|++..+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||+|+++++.++
T Consensus 325 -~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~ 403 (571)
T TIGR02203 325 -ERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLAS 403 (571)
T ss_pred -CCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHH
Confidence 1234569999999999764457999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhceEEccccccccccHhhhcCCCC--CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 000774 982 LRKILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1059 (1293)
Q Consensus 982 ~r~~i~~v~Q~~~lf~~ti~~nl~~~~--~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 1059 (1293)
+|++|+||||+|.+|++|++|||..+. +.++++++++++.+++++++.++|+|+||.+++.|.+||||||||++||||
T Consensus 404 ~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 404 LRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARA 483 (571)
T ss_pred HHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 999999999999999999999998774 478999999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChHH
Q 000774 1060 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1139 (1293)
Q Consensus 1060 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1139 (1293)
++++|+|||||||||+||+++++.|.+.|++..+++|+|+||||.+.+..||+|++|++|++++.|+|++++++ .+.|.
T Consensus 484 ll~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~ 562 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYA 562 (571)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHHH
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999875 45666
Q ss_pred HHHH
Q 000774 1140 KMVQ 1143 (1293)
Q Consensus 1140 ~l~~ 1143 (1293)
+++.
T Consensus 563 ~~~~ 566 (571)
T TIGR02203 563 QLHN 566 (571)
T ss_pred HHHH
Confidence 5544
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-68 Score=676.18 Aligned_cols=483 Identities=21% Similarity=0.299 Sum_probs=409.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000774 21 VVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRII 99 (1293)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~~~~~~~i 99 (1293)
.++..++.....+.....+.++...+|..+|+++++.+..++++.++|++++++++|++.+++.+ ..+..++...+.++
T Consensus 211 ~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i 290 (711)
T TIGR00958 211 SIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLL 290 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455566788888999999999999999999999999999999999999999865 45666677777777
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Q 000774 100 ISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVR 179 (1293)
Q Consensus 100 ~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~~~ 179 (1293)
+++++++...+.++++.++.+++.+.+..++.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.+++.+..
T Consensus 291 ~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~ 370 (711)
T TIGR00958 291 GLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEAL 370 (711)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHH
Confidence 77788888888888888777777777888888888888999999999999999999999999999999999988888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 180 NDELSWFRKAQFLAACNSFILNSIP--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVS 257 (1293)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~s 257 (1293)
++..+...+..........+...+. ..+.++.+|++.+..|.+++|.+++++.+...+..|+..++..+..+.++..+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a 450 (711)
T TIGR00958 371 EETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGA 450 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766665554444443333333222 22344567888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccCCCCCC-CCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcC
Q 000774 258 LKRMEEFLLAEEKILLPNPPL-TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 258 ~~Ri~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~ 336 (1293)
++|+.++++.+++........ .+....|+++||+|+|++.+++++|+|+||+|++||+++||||||||||||+++|+|+
T Consensus 451 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 451 SEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 999999998765432111111 1123469999999999854457899999999999999999999999999999999999
Q ss_pred CCCCCCCcee------------ecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCCCccc
Q 000774 337 LPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTE 403 (1293)
Q Consensus 337 ~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ 403 (1293)
++|++|.... ++++|+||||+|++|++||+|||.+|.+ .++++++++++.++++++++.+|+|++|.
T Consensus 531 ~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ 610 (711)
T TIGR00958 531 YQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTE 610 (711)
T ss_pred cCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCc
Confidence 9999984321 3457999999999999999999999964 67889999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEe
Q 000774 404 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVH 483 (1293)
Q Consensus 404 ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~ 483 (1293)
+||+|.+||||||||++||||++++|+|||||||||+||+++++.+.+ . ...+++|+|+||||++.++.||+|++|+
T Consensus 611 ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~--~~~~~~TvIiItHrl~~i~~aD~IivL~ 687 (711)
T TIGR00958 611 VGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S--RSRASRTVLLIAHRLSTVERADQILVLK 687 (711)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h--hccCCCeEEEEeccHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999987 2 2346899999999999999999999999
Q ss_pred CCeEEEecChHHHhhccHHHHHH
Q 000774 484 EGMVKEEGTFEDLSNNGELFQKL 506 (1293)
Q Consensus 484 ~G~i~~~g~~~~l~~~~~~~~~~ 506 (1293)
+|+|+++|+|+||+++++.|+++
T Consensus 688 ~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 688 KGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred CCEEEEeeCHHHHHhCCCchHhc
Confidence 99999999999999988888765
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-69 Score=669.93 Aligned_cols=447 Identities=23% Similarity=0.341 Sum_probs=338.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 350 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~~~ 350 (1293)
.|+++|++++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|.... .+..
T Consensus 5 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 589999999996 357999999999999999999999999999999999999999884321 1235
Q ss_pred EEEEcCCcccc-CccHHHHHccCCC-------C---CH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHH
Q 000774 351 VAYVPQVSWIF-NATVRDNILFGSA-------F---EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 415 (1293)
Q Consensus 351 i~~v~Q~~~l~-~~Tv~eni~~g~~-------~---~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGq 415 (1293)
|+|++|++.++ ..||+||+.++.. . +. +++.+.++..++.+. ......+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-----------LDEKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHHH
Confidence 99999999886 5699999987531 0 11 223344444444322 233446899999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChH
Q 000774 416 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 494 (1293)
Q Consensus 416 kqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 494 (1293)
|||++|||||+.+|++|||||||++||+.+.+++.+.+.+...+|+|+|+|||+++++.. ||+|++|++|+++..|+++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999998766555568999999999999874 8999999999999887665
Q ss_pred HHhhccHHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccccccchhhhhhhcCcccHHH
Q 000774 495 DLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKV 574 (1293)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 574 (1293)
++.... ....
T Consensus 231 ~~~~~~-----~~~~----------------------------------------------------------------- 240 (510)
T PRK09700 231 DVSNDD-----IVRL----------------------------------------------------------------- 240 (510)
T ss_pred hCCHHH-----HHHH-----------------------------------------------------------------
Confidence 432100 0000
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 575 LSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLY 654 (1293)
Q Consensus 575 ~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 654 (1293)
T Consensus 241 -------------------------------------------------------------------------------- 240 (510)
T PRK09700 241 -------------------------------------------------------------------------------- 240 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 655 AAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLL 734 (1293)
Q Consensus 655 ~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1293)
+ + |
T Consensus 241 ------------~-------~-----~----------------------------------------------------- 243 (510)
T PRK09700 241 ------------M-------V-----G----------------------------------------------------- 243 (510)
T ss_pred ------------h-------c-----C-----------------------------------------------------
Confidence 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 735 LLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRL 814 (1293)
Q Consensus 735 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1293)
+ .
T Consensus 244 ------------------------~-~----------------------------------------------------- 245 (510)
T PRK09700 244 ------------------------R-E----------------------------------------------------- 245 (510)
T ss_pred ------------------------C-C-----------------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccc
Q 000774 815 EIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVI 894 (1293)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~ 894 (1293)
.. .+ .....+..
T Consensus 246 ---------------------~~----------------------------------------~~---~~~~~~~~---- 257 (510)
T PRK09700 246 ---------------------LQ----------------------------------------NR---FNAMKENV---- 257 (510)
T ss_pred ---------------------cc----------------------------------------cc---cccccccc----
Confidence 00 00 00000000
Q ss_pred CCCCCCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeec
Q 000774 895 ESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 974 (1293)
Q Consensus 895 ~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i 974 (1293)
. ++ +....++++|+++.|+ .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 258 --~-~~---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~ 327 (510)
T PRK09700 258 --S-NL---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDI 327 (510)
T ss_pred --c-cC---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEEC
Confidence 0 00 0112489999998763 389999999999999999999999999999999999999999999999998
Q ss_pred CCCCh-HHHhhhceEEcccc---ccccc-cHhhhcCCCCCCC----HH--HH-HHHHHHhhHHHHHHHccCCcc-hhhhc
Q 000774 975 AKFGL-MDLRKILGIIPQSP---VLFSG-TVRFNLDPFSEHS----DA--DL-WEALERAHLKDAIRRNSLGLD-AQVSE 1041 (1293)
Q Consensus 975 ~~~~~-~~~r~~i~~v~Q~~---~lf~~-ti~~nl~~~~~~~----~~--~~-~~~l~~~~l~~~i~~lp~gl~-~~~~~ 1041 (1293)
...++ ..+|+.|||+||++ .+|.. |+++|+.+..... .. .. ........+.+.++.+ |+. .....
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~ 405 (510)
T PRK09700 328 SPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL--ALKCHSVNQ 405 (510)
T ss_pred CCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhc--CCCCCCccC
Confidence 66544 34567899999984 56654 9999986421100 00 00 0000112234555554 453 34566
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCC
Q 000774 1042 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSG 1119 (1293)
Q Consensus 1042 ~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G 1119 (1293)
...+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+||||++.+.. |||+++|++|
T Consensus 406 ~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G 485 (510)
T PRK09700 406 NITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEG 485 (510)
T ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECC
Confidence 677899999999999999999999999999999999999999999999864 47899999999999876 9999999999
Q ss_pred eEeeecChhh
Q 000774 1120 RVLEYDTPEE 1129 (1293)
Q Consensus 1120 ~i~~~g~~~e 1129 (1293)
++++.+++.+
T Consensus 486 ~i~~~~~~~~ 495 (510)
T PRK09700 486 RLTQILTNRD 495 (510)
T ss_pred EEEEEecCcc
Confidence 9998876533
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-70 Score=673.80 Aligned_cols=438 Identities=27% Similarity=0.438 Sum_probs=337.6
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCCCCcee----------------
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--PPVSDASAV---------------- 346 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~--~~~~g~~~~---------------- 346 (1293)
|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+. +|++|....
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEEC---CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 47899999995 357999999999999999999999999999999999997 688874321
Q ss_pred -----------------------------ecCcEEEEcCC-cccc-CccHHHHHccCC---CCCH----HHHHHHHHHcC
Q 000774 347 -----------------------------IRGTVAYVPQV-SWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTS 388 (1293)
Q Consensus 347 -----------------------------~~~~i~~v~Q~-~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~ 388 (1293)
.+..++|++|+ +.++ ..|++||+.++. ..+. +++.++++..+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 12359999998 5666 469999998742 1221 34455666666
Q ss_pred ChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEe
Q 000774 389 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVT 467 (1293)
Q Consensus 389 l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vt 467 (1293)
+.+..+. ...+|||||||||+|||||+.+|++|||||||++||+.+.+++.+.+.+... .|+|||+||
T Consensus 158 l~~~~~~-----------~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRITH-----------IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 6544332 3468999999999999999999999999999999999999999886655433 489999999
Q ss_pred cCcchhhh-CCeEEEEeCCeEEEecChHHHhhccHHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcc
Q 000774 468 NQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEA 546 (1293)
Q Consensus 468 H~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (1293)
|+++++.. ||+|++|++|+++..|+++++... .
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~------~---------------------------------------- 260 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV------F---------------------------------------- 260 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH------H----------------------------------------
Confidence 99999864 899999999998877655432100 0
Q ss_pred ccccccccccccchhhhhhhcCcccHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHH
Q 000774 547 SDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFY 626 (1293)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 626 (1293)
..
T Consensus 261 --------------------------------~~---------------------------------------------- 262 (520)
T TIGR03269 261 --------------------------------ME---------------------------------------------- 262 (520)
T ss_pred --------------------------------Hh----------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHH
Q 000774 627 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFM 706 (1293)
Q Consensus 627 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~ 706 (1293)
T Consensus 263 -------------------------------------------------------------------------------- 262 (520)
T TIGR03269 263 -------------------------------------------------------------------------------- 262 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHH
Q 000774 707 GQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA 786 (1293)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~ 786 (1293)
..
T Consensus 263 -------------------------------------------~~----------------------------------- 264 (520)
T TIGR03269 263 -------------------------------------------GV----------------------------------- 264 (520)
T ss_pred -------------------------------------------hc-----------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 787 DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRL 866 (1293)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~ 866 (1293)
T Consensus 265 -------------------------------------------------------------------------------- 264 (520)
T TIGR03269 265 -------------------------------------------------------------------------------- 264 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEecC---CCCCceeeeeEEecCCCEEEEEc
Q 000774 867 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVG 943 (1293)
Q Consensus 867 ~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~---~~~~~l~~vsl~i~~Ge~v~ivG 943 (1293)
.+... +... +. ....++++|++++|++ +..++|+|+||+|++||++||+|
T Consensus 265 -----------~~~~~----~~~~--------~~----~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G 317 (520)
T TIGR03269 265 -----------SEVEK----ECEV--------EV----GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVG 317 (520)
T ss_pred -----------hhhcc----cccc--------CC----CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEEC
Confidence 00000 0000 00 0124899999999952 22369999999999999999999
Q ss_pred CCCCCHHHHHHHHhcCCCCCcceEEEC-Cee---cCCCCh---HHHhhhceEEccccccccc-cHhhhcCCCC--CCCHH
Q 000774 944 RTGAGKSSMLNTLFRIVELERGRILID-GFD---IAKFGL---MDLRKILGIIPQSPVLFSG-TVRFNLDPFS--EHSDA 1013 (1293)
Q Consensus 944 ~~GsGKSTll~~l~g~~~p~~G~I~i~-g~~---i~~~~~---~~~r~~i~~v~Q~~~lf~~-ti~~nl~~~~--~~~~~ 1013 (1293)
|||||||||+++|+|+++|++|+|.++ |.+ +...++ ..+|++|+|+||++.+|.. |+++|+.... .....
T Consensus 318 ~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~ 397 (520)
T TIGR03269 318 TSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDE 397 (520)
T ss_pred CCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHH
Confidence 999999999999999999999999995 643 333322 2456789999999988865 9999986311 11111
Q ss_pred HHHHHHHHhhHHHHHHHccCCcch-----hhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 000774 1014 DLWEALERAHLKDAIRRNSLGLDA-----QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1088 (1293)
Q Consensus 1014 ~~~~~l~~~~l~~~i~~lp~gl~~-----~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l 1088 (1293)
+ ....+.++++.+ |++. ..+....+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|
T Consensus 398 ~-----~~~~~~~~l~~~--~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l 470 (520)
T TIGR03269 398 L-----ARMKAVITLKMV--GFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSI 470 (520)
T ss_pred H-----HHHHHHHHHHhC--CCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 1 011233444443 3432 356667889999999999999999999999999999999999999999999
Q ss_pred HHHc--CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1089 REEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1089 ~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
+++. .+.|||+|||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 471 ~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 471 LKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8864 37899999999999877 99999999999999999988764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=676.60 Aligned_cols=489 Identities=22% Similarity=0.340 Sum_probs=416.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000774 15 FSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWS 93 (1293)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~~ 93 (1293)
++++++.++..++.....+...+++.++...++..+|+|++++|..++++.++|+++++++ |++.+.+++ ..+...+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~ 278 (708)
T TIGR01193 200 IGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFL 278 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHH
Confidence 3344455556666666667778899999999999999999999999999999999999998 899998865 34445555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHH
Q 000774 94 APFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQS 173 (1293)
Q Consensus 94 ~~~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~ 173 (1293)
..+.++++++++++..++++++.++++++++.+..++.++.++..++.++..++..+.+.|.++|+++||.+|+|+.+.+
T Consensus 279 ~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 358 (708)
T TIGR01193 279 DMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYS 358 (708)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHH
Confidence 55556666667777888888888888777777788888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 174 KVQNVRNDELSWFRKAQFLAACNSFILNSIP--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQV 251 (1293)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~ 251 (1293)
++++...+..+...+..........+...+. ..+.++++|++.+..|.+|+|.++++..+...+..|+..+...+..+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~ 438 (708)
T TIGR01193 359 KIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKL 438 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988877776665555444444433333322 23445678889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccCCC--CCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHH
Q 000774 252 VNANVSLKRMEEFLLAEEKILLPN--PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL 329 (1293)
Q Consensus 252 ~~~~~s~~Ri~~~l~~~~~~~~~~--~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTL 329 (1293)
++++.+++|+.++++.+++..... .........|+++||+|+|++ ++++|+|+||+|++||++||+|+||||||||
T Consensus 439 ~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTL 516 (708)
T TIGR01193 439 QAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTL 516 (708)
T ss_pred HHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHH
Confidence 999999999999998765432111 111122346999999999963 4689999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCce------------eecCcEEEEcCCccccCccHHHHHccCC--CCCHHHHHHHHHHcCChhHHhc
Q 000774 330 ISAMLGELPPVSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDL 395 (1293)
Q Consensus 330 l~~l~g~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~ 395 (1293)
+++|+|+++|++|... .+|+.||||||+|++|++||+|||.++. ..++++++++++.++++++++.
T Consensus 517 lklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~ 596 (708)
T TIGR01193 517 AKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIEN 596 (708)
T ss_pred HHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHh
Confidence 9999999999998432 1356799999999999999999999983 4678899999999999999999
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh
Q 000774 396 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ 475 (1293)
Q Consensus 396 l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~ 475 (1293)
+|+|++|.+||+|.+|||||||||+||||++++|++||||||||+||+++++.+.+.+.+ . +++|+|+||||++.+..
T Consensus 597 lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~-~-~~~T~IiitHr~~~~~~ 674 (708)
T TIGR01193 597 MPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-L-QDKTIIFVAHRLSVAKQ 674 (708)
T ss_pred cccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH-h-cCCEEEEEecchHHHHc
Confidence 999999999999999999999999999999999999999999999999999999987764 3 68999999999999999
Q ss_pred CCeEEEEeCCeEEEecChHHHhhccHHHHHHHH
Q 000774 476 VDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 508 (1293)
Q Consensus 476 ~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 508 (1293)
||+|++|++|++++.|+|+++++.++.|+++++
T Consensus 675 ~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 675 SDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred CCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 999999999999999999999998888988764
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-67 Score=659.49 Aligned_cols=488 Identities=22% Similarity=0.268 Sum_probs=417.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000774 20 GVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRI 98 (1293)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~~~~~~~ 98 (1293)
+.++..++.....+...+++.++...+|..+|+++.+++..++.+.++|++++++++|++.+++.+ ..+..++..++.+
T Consensus 74 ~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~ 153 (582)
T PRK11176 74 LMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASI 153 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555566778888999999999999999999999999999999999999999999854 4566677777778
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Q 000774 99 IISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNV 178 (1293)
Q Consensus 99 i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~~ 178 (1293)
+++++++++..++++++.++++++.+++..++.+++++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++++.
T Consensus 154 ~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~ 233 (582)
T PRK11176 154 IGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKV 233 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHH
Confidence 78888888888888887777777777777788888888889999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 179 RNDELSWFRKAQFLAACNSFILNSIPV--LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANV 256 (1293)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~ 256 (1293)
.++..+...+..+...+...+...+.. .+.++++|++.+..|.+++|.++++.+++..+..|+..+...+..+..+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~ 313 (582)
T PRK11176 234 SNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMA 313 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777766665555544444444332 233456677778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcC
Q 000774 257 SLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 257 s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~ 336 (1293)
+++|+.++++.+++.........+....|+++|++|+|++ .++++|+|+||+|++||++||+|+||||||||+++|+|+
T Consensus 314 ~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~-~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 314 ACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPG-KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred HHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEecCC-CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 9999999987654422111111122235999999999974 357899999999999999999999999999999999999
Q ss_pred CCCCCCCcee------------ecCcEEEEcCCccccCccHHHHHccCCC--CCHHHHHHHHHHcCChhHHhcCCCCCcc
Q 000774 337 LPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVT 402 (1293)
Q Consensus 337 ~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~--~~~~~~~~~~~~~~l~~~~~~l~~g~~t 402 (1293)
++|++|.... +++.|+||||+|++|++||+|||.+|++ .++++++++++.+++.++++.+|+|++|
T Consensus 393 ~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt 472 (582)
T PRK11176 393 YDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_pred cCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCc
Confidence 9999984321 3467999999999999999999999853 6889999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE
Q 000774 403 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 482 (1293)
Q Consensus 403 ~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l 482 (1293)
.+|++|.+||||||||++|||||+++|+|+|||||||+||+++++.+++.+.+ ..+++|+|+||||++.++.||+|++|
T Consensus 473 ~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~-~~~~~tvI~VtHr~~~~~~~D~Ii~l 551 (582)
T PRK11176 473 VIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRLSTIEKADEILVV 551 (582)
T ss_pred eeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999999886654 45689999999999999999999999
Q ss_pred eCCeEEEecChHHHhhccHHHHHHHHH
Q 000774 483 HEGMVKEEGTFEDLSNNGELFQKLMEN 509 (1293)
Q Consensus 483 ~~G~i~~~g~~~~l~~~~~~~~~~~~~ 509 (1293)
++|++++.|+|+++++.++.|++++..
T Consensus 552 ~~g~i~e~g~~~~l~~~~~~y~~l~~~ 578 (582)
T PRK11176 552 EDGEIVERGTHAELLAQNGVYAQLHKM 578 (582)
T ss_pred ECCEEEEeCCHHHHHhCCChHHHHHHH
Confidence 999999999999999999999998864
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-67 Score=601.36 Aligned_cols=542 Identities=23% Similarity=0.323 Sum_probs=408.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 589 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG------PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDA 662 (1293)
Q Consensus 589 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 662 (1293)
+..+++++.+..+.+..|..+...++........ +......|.+..++..+++.++.+.+.+...++-++...+
T Consensus 33 ~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~ 112 (591)
T KOG0057|consen 33 FPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSD 112 (591)
T ss_pred HHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445666777777776555443211111 2235567888889999999999999999999999999999
Q ss_pred HHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000774 663 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIV-STMSLWAIMPLLLLFYAAY 741 (1293)
Q Consensus 663 ~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~ 741 (1293)
.|.+++.+.+++|....+|.+.+.+..-...+...+...+..++..++.+......+.+- .+...++++.. +..|.++
T Consensus 113 vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~-v~~Y~a~ 191 (591)
T KOG0057|consen 113 VFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGT-VGAYAAF 191 (591)
T ss_pred HHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH-HHHhhee
Confidence 999999999999999999999998888888887777766666666655554444333332 22222222222 2223322
Q ss_pred HHH-HHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 742 LYY-QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL 820 (1293)
Q Consensus 742 ~~~-~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1293)
..+ .....+.++....+.....+...+++.+..+||+|+.|++..+++...+....+.......+...+.+....+..+
T Consensus 192 Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv 271 (591)
T KOG0057|consen 192 TIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSV 271 (591)
T ss_pred EEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHH
Confidence 221 2222233333344445556778899999999999999999999999999999888887776666666555554433
Q ss_pred HHHHHHHHHH--HhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCC
Q 000774 821 MIWLTATFAV--VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNR 898 (1293)
Q Consensus 821 ~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~ 898 (1293)
.......+.. ..++..+ .+.+..+.++..++..++..+...+..+.+.+.-+..+....+.... ..+.
T Consensus 272 ~~~~im~l~~~gi~~~~mt-----vgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~---i~~~-- 341 (591)
T KOG0057|consen 272 ALTFIMVLGSNGIAAGKMT-----VGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDED---IQEA-- 341 (591)
T ss_pred HHHHHHHHHhhhhhhcccc-----ccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhh---hhhc--
Confidence 3322222222 1222222 22233344445555556665555555554444433333222111110 0010
Q ss_pred CCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCC
Q 000774 899 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG 978 (1293)
Q Consensus 899 ~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~ 978 (1293)
+.+....++.|+|+||+|.|+++ +++|+++||+|++||+|||+|+|||||||++|+|+|+++ ++|+|+|||+|+++++
T Consensus 342 ~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~ 419 (591)
T KOG0057|consen 342 ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVS 419 (591)
T ss_pred cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhC
Confidence 11112234569999999999876 469999999999999999999999999999999999999 9999999999999999
Q ss_pred hHHHhhhceEEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 000774 979 LMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1057 (1293)
Q Consensus 979 ~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 1057 (1293)
++.+|+.|||||||..||++||.+||.+++ ..+++++.+++++++++|.+.++|+||+|.++++|..|||||||||+||
T Consensus 420 ~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvsla 499 (591)
T KOG0057|consen 420 LESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLA 499 (591)
T ss_pred hHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHH
Confidence 999999999999999999999999998765 4689999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCCh
Q 000774 1058 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSS 1137 (1293)
Q Consensus 1058 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~ 1137 (1293)
||++++|+|+++|||||+||.+||+.|.+.+.+...++|+|+|.||++++++||+|+++++|++.+.|+|+||++ .++.
T Consensus 500 Ra~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~ 578 (591)
T KOG0057|consen 500 RAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSEL 578 (591)
T ss_pred HHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhH
Confidence 999999999999999999999999999999999888999999999999999999999999999999999999998 6667
Q ss_pred HHHHHHh
Q 000774 1138 FSKMVQS 1144 (1293)
Q Consensus 1138 ~~~l~~~ 1144 (1293)
|..++..
T Consensus 579 ~~~~w~~ 585 (591)
T KOG0057|consen 579 YADLWTT 585 (591)
T ss_pred HHHHhcc
Confidence 7766654
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-66 Score=652.10 Aligned_cols=547 Identities=22% Similarity=0.305 Sum_probs=424.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 587 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 666 (1293)
Q Consensus 587 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 666 (1293)
.+.+++++.++..++....|+++....|..... .....+..++.++.+...+..++...+......+....++.+++++
T Consensus 20 ~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 98 (588)
T PRK13657 20 LGILLAVANVLLAAATFAEPILFGRIIDAISGK-GDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFER 98 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777888887777654321 1111122222223333333344444444555556666677799999
Q ss_pred HHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 667 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 746 (1293)
Q Consensus 667 ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 746 (1293)
+++.|..+|++.+.|++++|+++|++.+...+...+..++..++..++.++++++.+|.+.++++.++++++.+..++.+
T Consensus 99 l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~ 178 (588)
T PRK13657 99 IIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMR 178 (588)
T ss_pred HHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877767767666666667777777788887766666555555556666666
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 747 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTA 826 (1293)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1293)
..++..+......+...+.+.|.++|+++||+|+.++.+.+++.+..+...+..........+.....+++..+...++.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (588)
T PRK13657 179 KTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAIL 258 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666778888999999999999999999999888888777776666554444443333333333222222211
Q ss_pred HH--HHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCCCCC
Q 000774 827 TF--AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 904 (1293)
Q Consensus 827 ~~--~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~~~~ 904 (1293)
++ ..+..+..+ .+.+..++.+...+..++..+......+.....+.+|+.++.+.+++.+.. ..... ..+
T Consensus 259 ~~g~~~v~~g~lt-----~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~~~~~-~~~ 330 (588)
T PRK13657 259 VLGAALVQKGQLR-----VGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP--PGAID-LGR 330 (588)
T ss_pred HHHHHHHHcCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCCC-cCC
Confidence 11 123344444 444555556666777788888888888888888999998887654432111 01000 011
Q ss_pred CCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhh
Q 000774 905 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984 (1293)
Q Consensus 905 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 984 (1293)
..+.|+++||+|+|+++ +++|+|+||+++|||++||+|+||||||||+++|+|+++|++|+|.+||.|+.+++...+|+
T Consensus 331 ~~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 409 (588)
T PRK13657 331 VKGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRR 409 (588)
T ss_pred CCCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHh
Confidence 23469999999999753 46999999999999999999999999999999999999999999999999999999999999
Q ss_pred hceEEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000774 985 ILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1063 (1293)
Q Consensus 985 ~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 1063 (1293)
+|+||||+|.+|++|++|||.++. +.++++++++++.+++++++.++|.|+||.++++|.+||||||||++|||||+++
T Consensus 410 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 410 NIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred heEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998764 4678999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChHHHHHH
Q 000774 1064 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1143 (1293)
Q Consensus 1064 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~l~~ 1143 (1293)
|+|||||||||+||+++++.+++.|++..+++|+|+||||++.+..||+|++|++|++++.|+|++++++ .+.|.+++.
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~ 568 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLR 568 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHH
Confidence 9999999999999999999999999998778999999999999999999999999999999999999975 467887776
Q ss_pred h
Q 000774 1144 S 1144 (1293)
Q Consensus 1144 ~ 1144 (1293)
.
T Consensus 569 ~ 569 (588)
T PRK13657 569 A 569 (588)
T ss_pred H
Confidence 4
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-69 Score=665.22 Aligned_cols=441 Identities=21% Similarity=0.331 Sum_probs=336.9
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 350 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~~~ 350 (1293)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..
T Consensus 4 ~i~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFP---GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeC---CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 589999999996 357999999999999999999999999999999999999999984321 1245
Q ss_pred EEEEcCCcccc-CccHHHHHccCCC-------CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHH
Q 000774 351 VAYVPQVSWIF-NATVRDNILFGSA-------FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 418 (1293)
Q Consensus 351 i~~v~Q~~~l~-~~Tv~eni~~g~~-------~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqR 418 (1293)
++|++|++.++ ..||+||+.++.. .+. +++.+.++..++.+.. .....+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-----------DKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc-----------cCchhhCCHHHHHH
Confidence 99999998876 5799999988632 111 1233444444443222 23446899999999
Q ss_pred HHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHh
Q 000774 419 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 497 (1293)
Q Consensus 419 ialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 497 (1293)
++|||||+.+|++|||||||++||+.+.+++.+.+.+...+|+|+|+|||+++++.. ||+|++|++|+++..|+.+++.
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 999999999999999999999999999999988665554568899999999999864 8999999999998876543221
Q ss_pred hccHHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccccccchhhhhhhcCcccHHHHHH
Q 000774 498 NNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSR 577 (1293)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 577 (1293)
... .
T Consensus 230 ~~~-----~----------------------------------------------------------------------- 233 (501)
T PRK10762 230 EDS-----L----------------------------------------------------------------------- 233 (501)
T ss_pred HHH-----H-----------------------------------------------------------------------
Confidence 000 0
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 578 YKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 657 (1293)
Q Consensus 578 y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1293)
.. .
T Consensus 234 -~~------------------------------~---------------------------------------------- 236 (501)
T PRK10762 234 -IE------------------------------M---------------------------------------------- 236 (501)
T ss_pred -HH------------------------------H----------------------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 658 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLF 737 (1293)
Q Consensus 658 ~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 737 (1293)
.
T Consensus 237 -----------------------------~-------------------------------------------------- 237 (501)
T PRK10762 237 -----------------------------M-------------------------------------------------- 237 (501)
T ss_pred -----------------------------h--------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 738 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV 817 (1293)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1293)
+ +
T Consensus 238 ------~---------------~--------------------------------------------------------- 239 (501)
T PRK10762 238 ------V---------------G--------------------------------------------------------- 239 (501)
T ss_pred ------c---------------C---------------------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCC
Q 000774 818 GGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 897 (1293)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~ 897 (1293)
. +.. ..++..+ .
T Consensus 240 ----------------~--------------------------------------------~~~---~~~~~~~----~- 251 (501)
T PRK10762 240 ----------------R--------------------------------------------KLE---DQYPRLD----K- 251 (501)
T ss_pred ----------------C--------------------------------------------Ccc---ccccccc----c-
Confidence 0 000 0000000 0
Q ss_pred CCCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCC
Q 000774 898 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 977 (1293)
Q Consensus 898 ~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~ 977 (1293)
+ +....++++|+++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 252 -~----~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~ 319 (501)
T PRK10762 252 -A----PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTR 319 (501)
T ss_pred -C----CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCC
Confidence 0 0112489999984 379999999999999999999999999999999999999999999999998776
Q ss_pred ChH-HHhhhceEEcccc---cccc-ccHhhhcCCCCC--CCH--HHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCCC
Q 000774 978 GLM-DLRKILGIIPQSP---VLFS-GTVRFNLDPFSE--HSD--ADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFS 1047 (1293)
Q Consensus 978 ~~~-~~r~~i~~v~Q~~---~lf~-~ti~~nl~~~~~--~~~--~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~LS 1047 (1293)
++. .+|+++||+||++ .+|. .|+++|+.+... ... ...........+.++++.+ |+. ...++....||
T Consensus 320 ~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LS 397 (501)
T PRK10762 320 SPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLF--NIKTPSMEQAIGLLS 397 (501)
T ss_pred CHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhc--CCCCCCccCchhhCC
Confidence 653 3567899999997 3554 599999964210 000 0000000112244555554 442 34566778899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1048 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1048 gGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|||++||+++.+.. ||+|++|++|+++..|
T Consensus 398 gGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 398 GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999875 47899999999999877 9999999999999999
Q ss_pred Chhhh
Q 000774 1126 TPEEL 1130 (1293)
Q Consensus 1126 ~~~el 1130 (1293)
+++++
T Consensus 478 ~~~~~ 482 (501)
T PRK10762 478 TREQA 482 (501)
T ss_pred ccccC
Confidence 88765
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-69 Score=663.33 Aligned_cols=450 Identities=24% Similarity=0.400 Sum_probs=343.7
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCceee-------------cC
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RG 349 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~~-------------~~ 349 (1293)
+.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|....- +.
T Consensus 10 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 10 PLLCARSISKQYS---GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred ceEEEEeEEEEeC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 3699999999996 3579999999999999999999999999999999999999999843211 13
Q ss_pred cEEEEcCCcccc-CccHHHHHccCCCCC---HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 000774 350 TVAYVPQVSWIF-NATVRDNILFGSAFE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 425 (1293)
Q Consensus 350 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral 425 (1293)
.+||++|++.++ ..||+||+.++.... .+++.+.++..++.+.. .....+||||||||++|||||
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~aL 155 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL-----------DSSAGSLEVADRQIVEILRGL 155 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc-----------cCChhhCCHHHHHHHHHHHHH
Confidence 599999999886 569999999874321 23445556666554322 234468999999999999999
Q ss_pred hcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhccHHHH
Q 000774 426 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGELFQ 504 (1293)
Q Consensus 426 ~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 504 (1293)
+.+|++|||||||++||+.+.+++.+.+.+...+|+|+|+|||+++++. .||+|++|++|++++.|+++++.... ..+
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~-~~~ 234 (510)
T PRK15439 156 MRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD-IIQ 234 (510)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH-HHH
Confidence 9999999999999999999999999876655556899999999999986 48999999999999988876653210 000
Q ss_pred HHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccccccchhhhhhhcCcccHHHHHHHHHHhch
Q 000774 505 KLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGG 584 (1293)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~~~ 584 (1293)
.+. .
T Consensus 235 ~~~---------------~------------------------------------------------------------- 238 (510)
T PRK15439 235 AIT---------------P------------------------------------------------------------- 238 (510)
T ss_pred HHh---------------C-------------------------------------------------------------
Confidence 000 0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 585 LWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 664 (1293)
Q Consensus 585 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 664 (1293)
T Consensus 239 -------------------------------------------------------------------------------- 238 (510)
T PRK15439 239 -------------------------------------------------------------------------------- 238 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 665 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 744 (1293)
Q Consensus 665 ~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 744 (1293)
.+ ..
T Consensus 239 -----~~--------~~--------------------------------------------------------------- 242 (510)
T PRK15439 239 -----AA--------RE--------------------------------------------------------------- 242 (510)
T ss_pred -----cc--------cc---------------------------------------------------------------
Confidence 00 00
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 745 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL 824 (1293)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1293)
.. ..
T Consensus 243 ----~~---~~--------------------------------------------------------------------- 246 (510)
T PRK15439 243 ----KS---LS--------------------------------------------------------------------- 246 (510)
T ss_pred ----cc---cc---------------------------------------------------------------------
Confidence 00 00
Q ss_pred HHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCCCCC
Q 000774 825 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 904 (1293)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~~~~ 904 (1293)
..++.. ...+...+ . .+ +
T Consensus 247 ---------------------------------------------------~~~~~~--~~~~~~~~-----~-~~---~ 264 (510)
T PRK15439 247 ---------------------------------------------------ASQKLW--LELPGNRR-----Q-QA---A 264 (510)
T ss_pred ---------------------------------------------------cccccc--cccccccc-----c-cC---C
Confidence 000000 00000000 0 00 0
Q ss_pred CCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH-Hh
Q 000774 905 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LR 983 (1293)
Q Consensus 905 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r 983 (1293)
....++++|+++ .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++.. .|
T Consensus 265 ~~~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 337 (510)
T PRK15439 265 GAPVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLA 337 (510)
T ss_pred CCceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 112489999983 2699999999999999999999999999999999999999999999999998766654 35
Q ss_pred hhceEEcccc---ccccc-cHhhhcCCC--C--CC--CHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCCChhHHH
Q 000774 984 KILGIIPQSP---VLFSG-TVRFNLDPF--S--EH--SDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 984 ~~i~~v~Q~~---~lf~~-ti~~nl~~~--~--~~--~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~LSgGqkq 1052 (1293)
+.|+|+||++ .+|.. |+.+|+... . .. ...+ ....+.++++.+ |+. ...+.....|||||||
T Consensus 338 ~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kq 410 (510)
T PRK15439 338 RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAR-----ENAVLERYRRAL--NIKFNHAEQAARTLSGGNQQ 410 (510)
T ss_pred CCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHH-----HHHHHHHHHHHc--CCCCCCccCccccCCcHHHH
Confidence 6799999986 36654 999998421 0 00 1111 112244555554 454 3456677889999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1130 (1293)
||+|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+||||++++.. |||+++|++|+++..|+++++
T Consensus 411 rl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 411 KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999999865 47899999999999977 999999999999999998876
Q ss_pred h
Q 000774 1131 L 1131 (1293)
Q Consensus 1131 ~ 1131 (1293)
.
T Consensus 491 ~ 491 (510)
T PRK15439 491 N 491 (510)
T ss_pred C
Confidence 5
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-69 Score=600.31 Aligned_cols=546 Identities=22% Similarity=0.365 Sum_probs=418.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 589 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFG------QVLVTLANSYWLIISSLYAAKRLHDA 662 (1293)
Q Consensus 589 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~ 662 (1293)
+.+++++++.-.+....|.+.....+...............|.++.+. +.++.-+++++.........+.+--+
T Consensus 218 ~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~ 297 (790)
T KOG0056|consen 218 VFCLFLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETE 297 (790)
T ss_pred HHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHH
Confidence 334444445555666666655555554432111222233444444443 35667778888888899999999999
Q ss_pred HHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 663 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFV-LIGIVSTMSLWAIMPLLLLFYAAY 741 (1293)
Q Consensus 663 ~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~ 741 (1293)
+|+|+..+++.|+-.+.+|+.+.-+......+. .....+..+...+.-+.++++ +....++++.++++..+.++....
T Consensus 298 lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~T 376 (790)
T KOG0056|consen 298 LFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVT 376 (790)
T ss_pred HHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhhee
Confidence 999999999999999999998877776665554 333333333333333333322 222345555555444444433322
Q ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 742 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 821 (1293)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1293)
.....-..+.+|....+...-.+.-.+++-+.+++|-|+++++..+++.+...++++..++....-..+......+.++.
T Consensus 377 i~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lg 456 (790)
T KOG0056|consen 377 IKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLG 456 (790)
T ss_pred eeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 22211122222222222222334567899999999999999999999999999999988887765555554444333322
Q ss_pred HHHHHHHHH--HhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCC
Q 000774 822 IWLTATFAV--VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP 899 (1293)
Q Consensus 822 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~ 899 (1293)
......+.+ +..+..+ .+...++.+|.+++..+++++......+++.+.-+|++.++++.++|. .+.+..
T Consensus 457 ll~gsll~aY~Vt~q~lt-----VGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eV---vd~P~a 528 (790)
T KOG0056|consen 457 LLAGSLLCAYRVTEQTLT-----VGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEV---VDLPGA 528 (790)
T ss_pred Hhhhhheeeeeeeecccc-----ccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchh---hcCCCC
Confidence 222221111 1122222 455667889999999999999999999999999999999998655442 222222
Q ss_pred CCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCCh
Q 000774 900 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 979 (1293)
Q Consensus 900 ~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~ 979 (1293)
++.....|.|+|+||+|.|.++ +|+|+||||+++||+.+|+|||||+||||++++|+|+++.++|.|.|||+||+....
T Consensus 529 ~pl~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~ 607 (790)
T KOG0056|consen 529 PPLKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ 607 (790)
T ss_pred CCccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHH
Confidence 2222346889999999999876 479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhceEEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000774 980 MDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1058 (1293)
Q Consensus 980 ~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 1058 (1293)
+.+|++||+||||..||++||..||.+.. .+++|++.+|++.++++|.|..+|+||+|.++|+|-.||||||||+++||
T Consensus 608 ~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiAR 687 (790)
T KOG0056|consen 608 SSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIAR 687 (790)
T ss_pred HHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHH
Confidence 99999999999999999999999998654 46899999999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChH
Q 000774 1059 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138 (1293)
Q Consensus 1059 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 1138 (1293)
+++++|.|++|||+||+||..|++.|+.+|.+...++|.|+|+||++++-+||.|+|+++|+|+|.|+|+||+.+.+|.|
T Consensus 688 tiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Y 767 (790)
T KOG0056|consen 688 TILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAY 767 (790)
T ss_pred HHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred HHHHHh
Q 000774 1139 SKMVQS 1144 (1293)
Q Consensus 1139 ~~l~~~ 1144 (1293)
.+|++.
T Consensus 768 a~MWq~ 773 (790)
T KOG0056|consen 768 ADMWQA 773 (790)
T ss_pred HHHHHH
Confidence 999974
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-67 Score=653.95 Aligned_cols=488 Identities=27% Similarity=0.399 Sum_probs=412.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000774 21 VVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWS-APFRII 99 (1293)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~~~l~~~~~-~~~~~i 99 (1293)
.++..++.....+...+.+.++...+|..+|+|+++++..++++.++|++++++++|++.++..+......+. .++.++
T Consensus 62 ~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~ 141 (567)
T COG1132 62 ALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLI 141 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344555555555566677999999999999999999999999999999999999999999997755433333 456666
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Q 000774 100 ISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVR 179 (1293)
Q Consensus 100 ~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~~~ 179 (1293)
..+++++...|.++++.+++.+++..+..++.++.++..++.++..++..+.+.|.++|++++|.|+.++...+++.+..
T Consensus 142 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~ 221 (567)
T COG1132 142 GSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEAN 221 (567)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHH
Confidence 66777777777788887777777777777777777888999999999999999999999999999999998877777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 180 NDELSWFRKAQFLAACNSFILNSIP--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVS 257 (1293)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~s 257 (1293)
+...+...+..........+...+. ..+.++.++.+.+..+.+++|.+++++.++..+..|+..+...+..+..+..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 301 (567)
T COG1132 222 EELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAA 301 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666554443444343333322222 23445566777788889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 000774 258 LKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 258 ~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~ 337 (1293)
++|+.++++.++...............|+++||+|+|++ ++++|+|+||++++||++|||||||||||||+++|+|++
T Consensus 302 ~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~ 379 (567)
T COG1132 302 AERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY 379 (567)
T ss_pred HHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 999999999865432222111223346999999999974 578999999999999999999999999999999999999
Q ss_pred CCCCCCcee------------ecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCCCcccc
Q 000774 338 PPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404 (1293)
Q Consensus 338 ~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~i 404 (1293)
+|++|.... +|++|+||||+|+||++||+|||.+|++ .++++++++++.+++++++..+|+|++|.+
T Consensus 380 ~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~v 459 (567)
T COG1132 380 DPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIV 459 (567)
T ss_pred CCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccee
Confidence 999984332 3567999999999999999999999987 688999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeC
Q 000774 405 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 484 (1293)
Q Consensus 405 g~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~ 484 (1293)
||+|.+||||||||++||||+++||+|||||||||+||+++++.+.+.+. ...++||+|+|+||++.+.+||+|+||++
T Consensus 460 ge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~-~l~~~rT~iiIaHRlsti~~aD~IiVl~~ 538 (567)
T COG1132 460 GERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALK-KLLKGRTTLIIAHRLSTIKNADRIIVLDN 538 (567)
T ss_pred cCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHH-HHhcCCEEEEEeccHhHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999988765 34477999999999999999999999999
Q ss_pred CeEEEecChHHHhhccHHHHHHHHHhc
Q 000774 485 GMVKEEGTFEDLSNNGELFQKLMENAG 511 (1293)
Q Consensus 485 G~i~~~g~~~~l~~~~~~~~~~~~~~~ 511 (1293)
|+|++.|+|+||+++++.|++++..+.
T Consensus 539 G~i~e~G~h~eLl~~~g~y~~l~~~~~ 565 (567)
T COG1132 539 GRIVERGTHEELLAKGGLYARLYQAQG 565 (567)
T ss_pred CEEEEecCHHHHHHcCCHHHHHHHHhh
Confidence 999999999999999999999997653
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-68 Score=661.70 Aligned_cols=201 Identities=17% Similarity=0.334 Sum_probs=169.4
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. +++|
T Consensus 319 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~ 385 (530)
T PRK15064 319 ALEVENLTKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIG 385 (530)
T ss_pred eEEEEeeEEeeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEE
Confidence 59999999999753 6999999999999999999999999999999999999999999999872 4799
Q ss_pred EEccccc--ccc-ccHhhhcCCCC--CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 988 IIPQSPV--LFS-GTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 988 ~v~Q~~~--lf~-~ti~~nl~~~~--~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
|+||++. ++. .|+++|+..+. ...++++.+.++..++. .........+||||||||++||||++.
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS----------QDDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC----------hhHhcCcccccCHHHHHHHHHHHHHhc
Confidence 9999974 444 59999986432 11223344444443321 123455677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEe-eecChhhhhhc
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELLSN 1133 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~-~~g~~~el~~~ 1133 (1293)
+|+||||||||++||+.+.+.+++.|++. ++|||+|||+++++.. ||||++|++|+++ ..|+++++++.
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999999999999999999999885 5699999999999887 9999999999998 77999888753
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-67 Score=651.48 Aligned_cols=486 Identities=20% Similarity=0.290 Sum_probs=407.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000774 19 VGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFR 97 (1293)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~~~~~~ 97 (1293)
++.++..++.+...+...+.+.++...+|..+|+|+++++..++++.++|++++++++|++.++.++ ..+..++...+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~ 147 (574)
T PRK11160 68 GAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVV 147 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666677788999999999999999999999999999999999999999999999976 445666666777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Q 000774 98 IIISLVLLYNELGVASLLGALLLVFMFP-VQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQ 176 (1293)
Q Consensus 98 ~i~~~~~l~~~~~~~~l~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~ 176 (1293)
++++++++++..|.++++.++++++.++ ++.++.++.++..++.++..++..+.+.|.++|+++||.|+.|+.+.++++
T Consensus 148 ~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~ 227 (574)
T PRK11160 148 ILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLE 227 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHH
Confidence 7777778888888888777665555444 345666777888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000774 177 NVRNDELSWFRKAQFLAACNSFILNSIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVL-RFPLFMLPNMITQVVN 253 (1293)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l-~~pl~~l~~~~~~~~~ 253 (1293)
+..++..+...+..+.......+...+..+ +.++++|++. ..|.+++|.+++++.+.... ..|+..++..+..+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~ 306 (574)
T PRK11160 228 QTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQ 306 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988887777666666655555444433322 2334556666 47889999998887766444 4588889999999999
Q ss_pred HHHHHHHHHHHhhhhhcccCC-CCCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHH
Q 000774 254 ANVSLKRMEEFLLAEEKILLP-NPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 332 (1293)
Q Consensus 254 ~~~s~~Ri~~~l~~~~~~~~~-~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~ 332 (1293)
+..+++||.++++.+++...+ ..........|+++||+|+|++ +++++|+|+||++++||++||+||||||||||+++
T Consensus 307 ~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~-~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~l 385 (574)
T PRK11160 307 VIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPD-QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQL 385 (574)
T ss_pred HHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCC-CCCcceecceEEECCCCEEEEECCCCCCHHHHHHH
Confidence 999999999999876542211 1111122346999999999974 24679999999999999999999999999999999
Q ss_pred HhcCCCCCCCCce------------eecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCC
Q 000774 333 MLGELPPVSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGG 399 (1293)
Q Consensus 333 l~g~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g 399 (1293)
|+|+++|++|... .+|+.|+||||+|++|++||+|||.++.+ .++++++++++.++++++++. |+|
T Consensus 386 l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~G 464 (574)
T PRK11160 386 LTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKG 464 (574)
T ss_pred HhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccc
Confidence 9999999998432 13457999999999999999999999865 678899999999999999999 999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeE
Q 000774 400 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 479 (1293)
Q Consensus 400 ~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i 479 (1293)
++|.+||+|.+||||||||++|||||+++|++||||||||+||+++++.+.+.+.+ ..+++|+|+||||++.++.||+|
T Consensus 465 ldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~-~~~~~tviiitHr~~~~~~~d~i 543 (574)
T PRK11160 465 LNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE-HAQNKTVLMITHRLTGLEQFDRI 543 (574)
T ss_pred cCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH-HcCCCEEEEEecChhHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999886544 45689999999999999999999
Q ss_pred EEEeCCeEEEecChHHHhhccHHHHHHHH
Q 000774 480 ILVHEGMVKEEGTFEDLSNNGELFQKLME 508 (1293)
Q Consensus 480 ~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 508 (1293)
++|++|++++.|+|+|++++++.|+++++
T Consensus 544 ~~l~~G~i~~~g~~~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 544 CVMDNGQIIEQGTHQELLAQQGRYYQLKQ 572 (574)
T ss_pred EEEeCCeEEEeCCHHHHHhcCcHHHHHHh
Confidence 99999999999999999999999999875
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-67 Score=669.09 Aligned_cols=480 Identities=24% Similarity=0.353 Sum_probs=412.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000774 16 SIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSA 94 (1293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~~-~l~~~~~~ 94 (1293)
+++++.++..++.....+...+.+.++...++..+|+|++++|..+ .+.++|++++++ +|++.+++++. .+...+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~ 269 (694)
T TIGR03375 192 GVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALID 269 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHH
Confidence 3444455566666667777788999999999999999999999987 678999999998 89999998653 44445555
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHH
Q 000774 95 PFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSK 174 (1293)
Q Consensus 95 ~~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~ 174 (1293)
.+.++++++++++..++++++.++++++++++..++.++.++..++..+..+++.+.+.|.++|+++||.|++|+.+.++
T Consensus 270 ~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 349 (694)
T TIGR03375 270 LPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRR 349 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHH
Confidence 55565666677778888888888888888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 175 VQNVRNDELSWFRKAQFLAACNSFILNSIPV--LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVV 252 (1293)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~ 252 (1293)
+++..++..+...+..........+...+.. .+.++++|++.+..|.+|+|.+++++.++..+..|+..++..+..+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~ 429 (694)
T TIGR03375 350 WEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQ 429 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888877777766666555544444332 23456678888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccCCCC-C-CCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHH
Q 000774 253 NANVSLKRMEEFLLAEEKILLPNP-P-LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 330 (1293)
Q Consensus 253 ~~~~s~~Ri~~~l~~~~~~~~~~~-~-~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl 330 (1293)
.+..+++|+.++++.+++...... . .......|+++||+|+|++ .++++|+|+||+|++||++||||+||||||||+
T Consensus 430 ~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~-~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLl 508 (694)
T TIGR03375 430 QAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPG-QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLL 508 (694)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCC-CCccceeeeeEEECCCCEEEEECCCCCCHHHHH
Confidence 999999999999987654321111 0 1112346999999999974 356899999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCce------------eecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCC
Q 000774 331 SAMLGELPPVSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLP 397 (1293)
Q Consensus 331 ~~l~g~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~ 397 (1293)
++|+|+++|++|... .+|+.|+||||+|++|++||+|||.++++ .++++++++++.++++++++.+|
T Consensus 509 klL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp 588 (694)
T TIGR03375 509 KLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHP 588 (694)
T ss_pred HHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCc
Confidence 999999999998432 13568999999999999999999999976 78899999999999999999999
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCC
Q 000774 398 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVD 477 (1293)
Q Consensus 398 ~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d 477 (1293)
+|++|.+||+|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+. ...+++|+|+||||++.++.||
T Consensus 589 ~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~-~~~~~~T~iiItHrl~~~~~~D 667 (694)
T TIGR03375 589 DGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK-RWLAGKTLVLVTHRTSLLDLVD 667 (694)
T ss_pred ccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHhCCCEEEEEecCHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999988654 4456899999999999999999
Q ss_pred eEEEEeCCeEEEecChHHHhhc
Q 000774 478 RIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 478 ~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
+|++|++|++++.|+|+||++.
T Consensus 668 ~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 668 RIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEEEEeCCEEEeeCCHHHHHHH
Confidence 9999999999999999999754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-69 Score=661.46 Aligned_cols=445 Identities=21% Similarity=0.291 Sum_probs=335.4
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------ecC
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 349 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~~ 349 (1293)
+.|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... ++.
T Consensus 3 ~~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 79 (501)
T PRK11288 3 PYLSFDGIGKTFP---GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79 (501)
T ss_pred ceEEEeeeEEEEC---CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhC
Confidence 3689999999996 357999999999999999999999999999999999999999985321 134
Q ss_pred cEEEEcCCcccc-CccHHHHHccCCC------CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHH
Q 000774 350 TVAYVPQVSWIF-NATVRDNILFGSA------FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 418 (1293)
Q Consensus 350 ~i~~v~Q~~~l~-~~Tv~eni~~g~~------~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqR 418 (1293)
.|+|++|++.++ ..||+||+.++.. .+. +++.++++..++... ......+||||||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qr 148 (501)
T PRK11288 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIGQRQM 148 (501)
T ss_pred CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHHHHHH
Confidence 699999999887 4699999987631 111 233444555444321 233456899999999
Q ss_pred HHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHh
Q 000774 419 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 497 (1293)
Q Consensus 419 ialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 497 (1293)
++|||||+.+|++|||||||++||+.+.+++.+.+.+...+|+|+|+|||+++++.. ||+|++|++|+++..++..+..
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 228 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQV 228 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccC
Confidence 999999999999999999999999999999998766554568999999999999865 8999999999988543210000
Q ss_pred hccHHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccccccchhhhhhhcCcccHHHHHH
Q 000774 498 NNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSR 577 (1293)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 577 (1293)
. .+.
T Consensus 229 ~---------------------------------------------------------------~~~------------- 232 (501)
T PRK11288 229 D---------------------------------------------------------------RDQ------------- 232 (501)
T ss_pred C---------------------------------------------------------------HHH-------------
Confidence 0 000
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 578 YKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 657 (1293)
Q Consensus 578 y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1293)
+..
T Consensus 233 ~~~----------------------------------------------------------------------------- 235 (501)
T PRK11288 233 LVQ----------------------------------------------------------------------------- 235 (501)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 658 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLF 737 (1293)
Q Consensus 658 ~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 737 (1293)
.+
T Consensus 236 ----------------------------~~-------------------------------------------------- 237 (501)
T PRK11288 236 ----------------------------AM-------------------------------------------------- 237 (501)
T ss_pred ----------------------------Hh--------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 738 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV 817 (1293)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1293)
. .
T Consensus 238 ------~--------------~---------------------------------------------------------- 239 (501)
T PRK11288 238 ------V--------------G---------------------------------------------------------- 239 (501)
T ss_pred ------c--------------C----------------------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCC
Q 000774 818 GGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 897 (1293)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~ 897 (1293)
... .+ .....+.
T Consensus 240 ----------------~~~-----------------------------------------~~---~~~~~~~-------- 251 (501)
T PRK11288 240 ----------------REI-----------------------------------------GD---IYGYRPR-------- 251 (501)
T ss_pred ----------------CCc-----------------------------------------cc---ccccccc--------
Confidence 000 00 0000000
Q ss_pred CCCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCC
Q 000774 898 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 977 (1293)
Q Consensus 898 ~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~ 977 (1293)
+ +....++++|+++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 252 -~----~~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~ 320 (501)
T PRK11288 252 -P----LGEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIR 320 (501)
T ss_pred -C----CCCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCC
Confidence 0 01124889999742 489999999999999999999999999999999999999999999999998654
Q ss_pred Ch-HHHhhhceEEccccc---ccc-ccHhhhcCCCCCCC--HHH--HHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCCC
Q 000774 978 GL-MDLRKILGIIPQSPV---LFS-GTVRFNLDPFSEHS--DAD--LWEALERAHLKDAIRRNSLGLD-AQVSEAGENFS 1047 (1293)
Q Consensus 978 ~~-~~~r~~i~~v~Q~~~---lf~-~ti~~nl~~~~~~~--~~~--~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~LS 1047 (1293)
++ ...|+.++|+||++. +|. .|+.+|+.+..... ... .........+.++++.+ +++ ........+||
T Consensus 321 ~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LS 398 (501)
T PRK11288 321 SPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSL--NIKTPSREQLIMNLS 398 (501)
T ss_pred CHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhc--CcccCCccCccccCC
Confidence 43 345678999999973 554 69999986421100 000 00000112234455554 442 33556677899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1048 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1048 gGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
|||||||+|||||+.+|+||||||||+|||+.+.+.+++.|+++. .+.|||+||||++++.. ||++++|++|++++.|
T Consensus 399 gGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 399 GGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999998865 47899999999999977 9999999999999999
Q ss_pred Chhhhh
Q 000774 1126 TPEELL 1131 (1293)
Q Consensus 1126 ~~~el~ 1131 (1293)
+++++.
T Consensus 479 ~~~~~~ 484 (501)
T PRK11288 479 AREQAT 484 (501)
T ss_pred ccccCC
Confidence 988764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-69 Score=661.68 Aligned_cols=448 Identities=20% Similarity=0.291 Sum_probs=334.5
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CCCCcee-------------ecC
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAV-------------IRG 349 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~--~~g~~~~-------------~~~ 349 (1293)
|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|.... .+.
T Consensus 2 l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFG---GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeC---CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 78999999996 35799999999999999999999999999999999999987 6774321 124
Q ss_pred cEEEEcCCcccc-CccHHHHHccCCCC-------CH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHH
Q 000774 350 TVAYVPQVSWIF-NATVRDNILFGSAF-------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 417 (1293)
Q Consensus 350 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~-------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkq 417 (1293)
.|+||+|++.++ ..||+||+.++... +. ++..++++..++.+.. ......+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN----------VTRPVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc----------ccCchhhCCHHHHH
Confidence 599999999876 56999999876321 11 1233344444432211 01234689999999
Q ss_pred HHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHH
Q 000774 418 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 496 (1293)
Q Consensus 418 RialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 496 (1293)
|++|||||+.+|++|||||||++||+.+.+++.+.+.+...+|+|+|+|||+++++.. ||+|++|++|+++..|+.+++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999998766555568999999999999875 899999999998865532210
Q ss_pred hhccHHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccccccchhhhhhhcCcccHHHHH
Q 000774 497 SNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLS 576 (1293)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 576 (1293)
... .
T Consensus 229 ~~~---------------------------------------------------------------~------------- 232 (500)
T TIGR02633 229 SED---------------------------------------------------------------D------------- 232 (500)
T ss_pred CHH---------------------------------------------------------------H-------------
Confidence 000 0
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 577 RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAA 656 (1293)
Q Consensus 577 ~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 656 (1293)
...
T Consensus 233 -~~~---------------------------------------------------------------------------- 235 (500)
T TIGR02633 233 -IIT---------------------------------------------------------------------------- 235 (500)
T ss_pred -HHH----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 657 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 736 (1293)
Q Consensus 657 ~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 736 (1293)
++
T Consensus 236 -----------------------------~~------------------------------------------------- 237 (500)
T TIGR02633 236 -----------------------------MM------------------------------------------------- 237 (500)
T ss_pred -----------------------------HH-------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 737 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 816 (1293)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1293)
.
T Consensus 238 -------~------------------------------------------------------------------------ 238 (500)
T TIGR02633 238 -------V------------------------------------------------------------------------ 238 (500)
T ss_pred -------h------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCC
Q 000774 817 VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES 896 (1293)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~ 896 (1293)
+. +... ..+...
T Consensus 239 -----------------~~-------------------------------------------~~~~--~~~~~~------ 250 (500)
T TIGR02633 239 -----------------GR-------------------------------------------EITS--LYPHEP------ 250 (500)
T ss_pred -----------------Cc-------------------------------------------cccc--cccccc------
Confidence 00 0000 000000
Q ss_pred CCCCCCCCCCccEEEEEEEEEecCC-CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-CcceEEECCeec
Q 000774 897 NRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDI 974 (1293)
Q Consensus 897 ~~~~~~~~~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-~~G~I~i~g~~i 974 (1293)
.+ +....++++|++++|+++ ...+|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++
T Consensus 251 -~~----~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~ 325 (500)
T TIGR02633 251 -HE----IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV 325 (500)
T ss_pred -cC----CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEEC
Confidence 00 011248999999999421 23599999999999999999999999999999999999996 899999999998
Q ss_pred CCCCh-HHHhhhceEEcccc---cccc-ccHhhhcCCCCC--CCH-HHHHHHHHHhhHHHHHHHccCCcch-hhhcCCCC
Q 000774 975 AKFGL-MDLRKILGIIPQSP---VLFS-GTVRFNLDPFSE--HSD-ADLWEALERAHLKDAIRRNSLGLDA-QVSEAGEN 1045 (1293)
Q Consensus 975 ~~~~~-~~~r~~i~~v~Q~~---~lf~-~ti~~nl~~~~~--~~~-~~~~~~l~~~~l~~~i~~lp~gl~~-~~~~~~~~ 1045 (1293)
...+. ..+|++|||+||++ .+|. .|+++|+.+... ... ..+........+.++++.+ ++.. ........
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~ 403 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL--KVKTASPFLPIGR 403 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc--CccCCCccCcccc
Confidence 65443 45677899999996 3665 499999865210 000 0000011112344555554 3432 34556678
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEee
Q 000774 1046 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1123 (1293)
Q Consensus 1046 LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 1123 (1293)
||||||||++|||||+.+|++|||||||++||+.+.+.+++.|+++. ++.|||+||||++++.. |||+++|++|+++.
T Consensus 404 LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998864 47899999999999977 99999999999998
Q ss_pred ecChhhh
Q 000774 1124 YDTPEEL 1130 (1293)
Q Consensus 1124 ~g~~~el 1130 (1293)
.++.+++
T Consensus 484 ~~~~~~~ 490 (500)
T TIGR02633 484 DFVNHAL 490 (500)
T ss_pred EEccccC
Confidence 7765443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-67 Score=596.76 Aligned_cols=483 Identities=24% Similarity=0.365 Sum_probs=393.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 23 LGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISL 102 (1293)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~~~l~~~~~~~~~~i~~~ 102 (1293)
.+...++.-....+...+++.+++|..+|+|+...++.....+++||++||++.||+.+++++..+..++...+.++.+.
T Consensus 70 ~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~ 149 (573)
T COG4987 70 LRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVV 149 (573)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHH
Confidence 33333333334466789999999999999999999999999999999999999999999998876666665554444333
Q ss_pred H-HH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHH
Q 000774 103 V-LL-YNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 180 (1293)
Q Consensus 103 ~-~l-~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~~~~ 180 (1293)
+ .+ |+-.+.+.++++.+++..++++..+.+..++..++..+.+....+.+.|.+.|...++.||.++.+.+.+....+
T Consensus 150 ~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~ 229 (573)
T COG4987 150 TIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEA 229 (573)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHH
Confidence 3 22 444455556666666666667777777778888888888999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HhcCCCC-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000774 181 DELSWFRKAQFLAACNSFILNSIPVLVTV-VSFGMFT-LLGGDLT-PARAFTSLSLFAVLRFPLFMLP-NMITQVVNANV 256 (1293)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~-~~~~~lt-~~~~~~~l~~~~~l~~pl~~l~-~~~~~~~~~~~ 256 (1293)
.+.+..++.+.+..+..++..++..++++ ..++... .-.|..+ +..+...+..|..+ .++..+. ..+....+...
T Consensus 230 ~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~-eaf~~L~~~A~~~lgq~~~ 308 (573)
T COG4987 230 SWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAAL-EAFEPLAPGAFQHLGQVIA 308 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHH-HHHhhhcchhHHHhhHHHH
Confidence 88888888888888888887776554433 2222222 2334444 33333333323322 2333343 77788999999
Q ss_pred HHHHHHHHhhhhhcccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcC
Q 000774 257 SLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 257 s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~ 336 (1293)
|++|+.++.+++++...+++........++++||+|+|++ ++.++|+|+||++++||++||+|+||||||||+++|.|.
T Consensus 309 Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~-~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~ 387 (573)
T COG4987 309 SARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPG-QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA 387 (573)
T ss_pred HHHHHhhhccCCcccCCCccccCCccceeeeccceeecCC-CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc
Confidence 9999999998877654432211111227999999999985 456899999999999999999999999999999999999
Q ss_pred CCCCCCCcee------------ecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCCCccc
Q 000774 337 LPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTE 403 (1293)
Q Consensus 337 ~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ 403 (1293)
++|++|+... ++..|++++|.+++|++|+|||+.++++ .++++++++++.++|++.+...|+|++|+
T Consensus 388 ~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~ 467 (573)
T COG4987 388 WDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTW 467 (573)
T ss_pred cCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhch
Confidence 9999984321 3347999999999999999999999976 57899999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEe
Q 000774 404 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVH 483 (1293)
Q Consensus 404 ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~ 483 (1293)
+||+|.+||||||||++|||+|++|++++||||||.+||+.|++++.+.+.. ..+|||+|+||||+..++.+|||++|+
T Consensus 468 lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~-~~~~kTll~vTHrL~~le~~drIivl~ 546 (573)
T COG4987 468 LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE-HAEGKTLLMVTHRLRGLERMDRIIVLD 546 (573)
T ss_pred hccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH-HhcCCeEEEEecccccHhhcCEEEEEE
Confidence 9999999999999999999999999999999999999999999999986655 457999999999999999999999999
Q ss_pred CCeEEEecChHHHhhccHHHHHHHH
Q 000774 484 EGMVKEEGTFEDLSNNGELFQKLME 508 (1293)
Q Consensus 484 ~G~i~~~g~~~~l~~~~~~~~~~~~ 508 (1293)
+|+++++|+|++++.+++.|+++.+
T Consensus 547 ~Gkiie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 547 NGKIIEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred CCeeeecCCHHhhhccccHHHHHhc
Confidence 9999999999999999999988764
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=642.01 Aligned_cols=548 Identities=20% Similarity=0.259 Sum_probs=425.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 586 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 665 (1293)
Q Consensus 586 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 665 (1293)
+.+++.+++.++..++.+..|+.++..+|...... ....+...+.++.+...+..++...+......+...+++.++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 97 (585)
T TIGR01192 19 NRVLLIVIANITLAAITIAEPILFGRIIDAISSKS-DVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFG 97 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777778888888877776543211 11112222222233333444444555555556666677789999
Q ss_pred HHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 666 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 745 (1293)
Q Consensus 666 ~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 745 (1293)
+++++|+.||+++++|++++|+++|++.+...+...+..++..++.++..+++++.++|.+.++++.++++++.+...+.
T Consensus 98 ~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~ 177 (585)
T TIGR01192 98 RIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVM 177 (585)
T ss_pred HHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877777777777777777777888888877766655555555556666
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 000774 746 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM---I 822 (1293)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 822 (1293)
+..++..+......+...+.+.|.++|+++||+|+.++.+.+++.+..+...+..........+......++..+. +
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 257 (585)
T TIGR01192 178 QRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCI 257 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666778889999999999999999999988888877777665554443333333222222222221 1
Q ss_pred HHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCCC
Q 000774 823 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 902 (1293)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~~ 902 (1293)
++.+.+. +..+..+ .+.+..++.+...+..++..+......+.....+.+|+.++.+.+++.... ..+...
T Consensus 258 ~~~g~~~-v~~g~it-----~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~---~~~~~~ 328 (585)
T TIGR01192 258 LVIGTVL-VIKGELS-----VGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP---ADAPEL 328 (585)
T ss_pred HHHHHHH-HHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC---ccCCCC
Confidence 2222222 3344444 444555666667777788888888888888899999999988755432111 111111
Q ss_pred CCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHH
Q 000774 903 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 982 (1293)
Q Consensus 903 ~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 982 (1293)
.+..+.++++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.++++..+
T Consensus 329 ~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 329 PNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESL 407 (585)
T ss_pred CCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHH
Confidence 1123569999999999753 368999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhceEEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 000774 983 RKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 1061 (1293)
Q Consensus 983 r~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 1061 (1293)
|++++||||+|.+|++|++|||.++. +.++++++++++.+++++++.++|+|++|.+++.|.+|||||||||+|||||+
T Consensus 408 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall 487 (585)
T TIGR01192 408 RKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAIL 487 (585)
T ss_pred HhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998764 45788999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChHHHH
Q 000774 1062 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1141 (1293)
Q Consensus 1062 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~l 1141 (1293)
++|++||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|++++.|+|++++++ ++.|+++
T Consensus 488 ~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l 566 (585)
T TIGR01192 488 KNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK-DGRFYKL 566 (585)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC-CChHHHH
Confidence 999999999999999999999999999988788999999999999988999999999999999999999975 4678877
Q ss_pred HHhh
Q 000774 1142 VQST 1145 (1293)
Q Consensus 1142 ~~~~ 1145 (1293)
+...
T Consensus 567 ~~~~ 570 (585)
T TIGR01192 567 LRRS 570 (585)
T ss_pred HHhC
Confidence 7653
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-66 Score=650.34 Aligned_cols=487 Identities=20% Similarity=0.246 Sum_probs=402.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000774 20 GVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRI 98 (1293)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~~-~l~~~~~~~~~~ 98 (1293)
..++..++.+...+...+.+.++...+|..+|+|+++.|..++++.++|++++++++|++.++.++. .+..++...+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~ 153 (592)
T PRK10790 74 LQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALI 153 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666677788999999999999999999999999999999999999999999998653 455556666666
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Q 000774 99 IISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNV 178 (1293)
Q Consensus 99 i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~~ 178 (1293)
+++++++++..++++++.++++++.+.+..+..++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++.+.
T Consensus 154 ~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~ 233 (592)
T PRK10790 154 GAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEA 233 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHH
Confidence 66666777777777777766666666566666677777777778888888999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 179 RNDELSWFRKAQFLAACN-SFILNSIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 255 (1293)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~ 255 (1293)
.++..+...+........ ..+...+..+ +.++.++++ +..|.+++|.+++++.++..+..|+..++..+..+.++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~ 312 (592)
T PRK10790 234 SRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAV 312 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776555543333322221 1111111111 111122223 467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhc
Q 000774 256 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 256 ~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g 335 (1293)
.+++||.++++.+++...... .......|+++|++|+|++ ++++|+|+||+|++||++||+|+||||||||+++|+|
T Consensus 313 ~s~~ri~~~l~~~~~~~~~~~-~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~g 389 (592)
T PRK10790 313 VAGERVFELMDGPRQQYGNDD-RPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG 389 (592)
T ss_pred HHHHHHHHHhcCCCccCCCCc-cCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 999999999976543211111 1112346999999999973 4679999999999999999999999999999999999
Q ss_pred CCCCCCCCce------------eecCcEEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCCCccc
Q 000774 336 ELPPVSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 403 (1293)
Q Consensus 336 ~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ 403 (1293)
+++|++|... .+++.|+||||+|++|++||+|||.++++.++++++++++.++++++++.+|+|++|.
T Consensus 390 l~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~ 469 (592)
T PRK10790 390 YYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTP 469 (592)
T ss_pred ccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcccccccc
Confidence 9999998431 1356799999999999999999999998888999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEe
Q 000774 404 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVH 483 (1293)
Q Consensus 404 ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~ 483 (1293)
+|++|.+||||||||++|||||+++|+|+|||||||+||+++++.+.+.+.+ ..+++|+|+||||++.++.||+|++|+
T Consensus 470 i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~-~~~~~tvIivtHr~~~l~~~D~ii~l~ 548 (592)
T PRK10790 470 LGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAA-VREHTTLVVIAHRLSTIVEADTILVLH 548 (592)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999876644 456799999999999999999999999
Q ss_pred CCeEEEecChHHHhhccHHHHHHHHHhc
Q 000774 484 EGMVKEEGTFEDLSNNGELFQKLMENAG 511 (1293)
Q Consensus 484 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 511 (1293)
+|++++.|+|+++++.++.|++++..+.
T Consensus 549 ~G~i~~~G~~~~L~~~~~~y~~l~~~~~ 576 (592)
T PRK10790 549 RGQAVEQGTHQQLLAAQGRYWQMYQLQL 576 (592)
T ss_pred CCEEEEEcCHHHHHhCCCHHHHHHHHHh
Confidence 9999999999999999999999987653
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-67 Score=660.37 Aligned_cols=199 Identities=23% Similarity=0.381 Sum_probs=164.5
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.|+++||+++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.+++. .++|
T Consensus 312 ~l~~~~l~~~y~~~--~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGDR--IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 58999999999753 6999999999999999999999999999999999999999999999741 2699
Q ss_pred EEcccc--cccc-ccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 988 IIPQSP--VLFS-GTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 988 ~v~Q~~--~lf~-~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
|+||++ .++. .|+.+++.... ...+.++ .+++..+ ++. .........|||||||||+|||+|+.
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~~L~~~--~l~~~~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKL---------RDYLGGF--GFQGDKVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHH---------HHHHHHc--CCChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 999985 2433 37777653211 1112223 3344443 332 23455667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEe-eecChhhhhh
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELLS 1132 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~-~~g~~~el~~ 1132 (1293)
+|+||||||||++||+.+.+.+.+.|+++ ++|||+||||++++.. ||+|++|++|+++ ..|+++++.+
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999999999999999999985 5699999999999987 9999999999997 6799999853
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-66 Score=643.86 Aligned_cols=508 Identities=23% Similarity=0.298 Sum_probs=398.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 588 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYN-TI--YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 664 (1293)
Q Consensus 588 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 664 (1293)
+++.+++.++...+.+..|+.++..+|....... ...+. .+ +.++.++..++.++..++....+.+...++|.+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 93 (529)
T TIGR02868 15 LVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVY 93 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666667777777766654321111 11111 11 12244556677788888888889999999999999
Q ss_pred HHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000774 665 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYA-AYLY 743 (1293)
Q Consensus 665 ~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~ 743 (1293)
++++++|..+|+++++|++++|+++|++.++..+...+..++..+..++..++++++++|.+.++++..++++.. ...+
T Consensus 94 ~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~ 173 (529)
T TIGR02868 94 DRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLV 173 (529)
T ss_pred HHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888888888888888888888888888776665544333332 2233
Q ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 744 YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW 823 (1293)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1293)
+.+..++..+......+.+.+++.|.++|+++||+|+.++.+.+++.+..+...+..........+......++..+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (529)
T TIGR02868 174 SLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVL 253 (529)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433444444455667888999999999999999999999998888887777666655544444444333333333222
Q ss_pred HHHHHH--HHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCC
Q 000774 824 LTATFA--VVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 901 (1293)
Q Consensus 824 ~~~~~~--~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~ 901 (1293)
++.++. .+..+..+ .+.+..++.+...+..++..+......+.....+.+|+.++++.+++.+... ...+..
T Consensus 254 ~~~~~g~~~~~~g~~t-----~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~ 327 (529)
T TIGR02868 254 GALWAGGPAVADGTLA-----PATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV-VPAAGA 327 (529)
T ss_pred HHHHHHHHHHhCCCCC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC-CCCCcc
Confidence 222221 12344444 4455566666677778888888888899999999999999998665432111 110111
Q ss_pred CCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH
Q 000774 902 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 981 (1293)
Q Consensus 902 ~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 981 (1293)
..+..+.|+++||+|+|+++ +++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.+||+|++++ .++
T Consensus 328 ~~~~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~ 405 (529)
T TIGR02868 328 LGLGKPTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDE 405 (529)
T ss_pred cCCCCceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHH
Confidence 12234569999999999754 3699999999999999999999999999999999999999999999999999999 999
Q ss_pred HhhhceEEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 982 LRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 982 ~r~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
+|++|+||||+|.+|++||+|||.++. +.++++++++++.+++++++.++|+|+||.++++|.+||||||||++||||+
T Consensus 406 lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal 485 (529)
T TIGR02868 406 LRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL 485 (529)
T ss_pred HHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999764 5689999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCc
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 1104 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~ 1104 (1293)
+++|+|||||||||+||+++++.|++.|++..+++|+|+||||+
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999988899999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-65 Score=643.53 Aligned_cols=549 Identities=25% Similarity=0.371 Sum_probs=436.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCC-Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 587 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GPL-FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 664 (1293)
Q Consensus 587 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 664 (1293)
.+.+.+++.++...+....|+.+....|....... ... ....++.++.+...++.+++.++....+.+....+|..++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 98 (576)
T TIGR02204 19 RVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVF 98 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777777778777777665321111 111 1222333444455666778888888899999999999999
Q ss_pred HHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 665 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 744 (1293)
Q Consensus 665 ~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 744 (1293)
+++++.|..+|+..+.|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+.++++..+++.+.+...+
T Consensus 99 ~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~ 178 (576)
T TIGR02204 99 AHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLF 178 (576)
T ss_pred HHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888777787788888888888888888877666555544444445555
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 745 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL 824 (1293)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1293)
.+..++..+..........+.+.|.++|+++||+++.++.+.+++.+..+...+..........+......++..+...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (576)
T TIGR02204 179 GRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVG 258 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666667777889999999999999999999998888888777766655544444444443333322222111
Q ss_pred HHH--HHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCCC
Q 000774 825 TAT--FAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 902 (1293)
Q Consensus 825 ~~~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~~ 902 (1293)
... ...+..+..+ .+.+..+..+...+..++..+...+..+.....+.+|+.++++.+++.+...+. ....
T Consensus 259 ~~~~g~~~v~~g~lt-----~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~--~~~~ 331 (576)
T TIGR02204 259 VLWVGAHDVIAGKMS-----AGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHP--KTLP 331 (576)
T ss_pred HHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCC--ccCC
Confidence 111 1122344444 455556666777788889999999999999999999999998765542111101 1111
Q ss_pred CCCCccEEEEEEEEEecCCC-CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH
Q 000774 903 WPSSGSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 981 (1293)
Q Consensus 903 ~~~~g~i~~~~v~~~y~~~~-~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 981 (1293)
++..+.|+++||+|+|+++. +++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+|.+||.|++++++.+
T Consensus 332 ~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~ 411 (576)
T TIGR02204 332 VPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE 411 (576)
T ss_pred cCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHH
Confidence 22345699999999997532 46999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhceEEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 982 LRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 982 ~r~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
+|++|+|+||+|.+|++|++|||.++. +.++++++++++.+++.++++++|.|+++.+++.|.+||||||||++||||+
T Consensus 412 ~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal 491 (576)
T TIGR02204 412 LRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI 491 (576)
T ss_pred HHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999998754 4578999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChHHH
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 1140 (1293)
+++|++||||||||+||+++++.+++.|++..+++|+|+||||++.+..||+|++|++|++++.|+|++++++ ++.|++
T Consensus 492 ~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~ 570 (576)
T TIGR02204 492 LKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYAR 570 (576)
T ss_pred HhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHH
Confidence 9999999999999999999999999999998889999999999999999999999999999999999999874 566777
Q ss_pred HHH
Q 000774 1141 MVQ 1143 (1293)
Q Consensus 1141 l~~ 1143 (1293)
++.
T Consensus 571 l~~ 573 (576)
T TIGR02204 571 LAR 573 (576)
T ss_pred HHh
Confidence 664
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-68 Score=637.40 Aligned_cols=487 Identities=25% Similarity=0.343 Sum_probs=339.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCceeecC-cEEEEcCCcccc-
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TVAYVPQVSWIF- 361 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~~~~-~i~~v~Q~~~l~- 361 (1293)
.|.++|++++|+ ++++|+|+||++.+|+++||||+|||||||||++|+|...|++|.+....+ +|+|++|++.+.
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 589999999995 579999999999999999999999999999999999999999995444443 799999999997
Q ss_pred CccHHHHHccCCCCC---HHHHHHHHH------------------H---cCChhHHhc-CCCCCcccccCCCCCCChHHH
Q 000774 362 NATVRDNILFGSAFE---PARYEKAID------------------V---TSLQHDLDL-LPGGDVTEIGERGVNISGGQK 416 (1293)
Q Consensus 362 ~~Tv~eni~~g~~~~---~~~~~~~~~------------------~---~~l~~~~~~-l~~g~~t~ig~~g~~LSGGqk 416 (1293)
..||.+.+..+...- ..+++.+.. . ..++..+.. +.+-..+.......+||||||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r 159 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWR 159 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHH
Confidence 569999998763210 011111110 0 000111111 111111111345578999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEE-EecChH
Q 000774 417 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK-EEGTFE 494 (1293)
Q Consensus 417 qRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~ 494 (1293)
.|++|||||+.+||+|||||||||||.++..|+.+.+.+ .+| |+|+||||++||+. |++|+.++.|++. +.|+++
T Consensus 160 ~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~--~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 160 RRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR--YPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence 999999999999999999999999999999999987753 345 99999999999997 6999999999875 477777
Q ss_pred HHhhccHHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccccccchhhhhhhcCcccHHH
Q 000774 495 DLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKV 574 (1293)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 574 (1293)
.+.+....-..........
T Consensus 237 ~~~~~r~~~~~~~~~~~~~------------------------------------------------------------- 255 (530)
T COG0488 237 SYLEQKAERLRQEAAAYEK------------------------------------------------------------- 255 (530)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------------------------------------------------
Confidence 7654432211100000000
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 575 LSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLY 654 (1293)
Q Consensus 575 ~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 654 (1293)
T Consensus 256 -------------------------------------------------------------------------------- 255 (530)
T COG0488 256 -------------------------------------------------------------------------------- 255 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 655 AAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLL 734 (1293)
Q Consensus 655 ~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1293)
T Consensus 256 -------------------------------------------------------------------------------- 255 (530)
T COG0488 256 -------------------------------------------------------------------------------- 255 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 735 LLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRL 814 (1293)
Q Consensus 735 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1293)
..++ ..+..++++....-+.-
T Consensus 256 ------------~~~~------------~~~~~~~i~r~~~~~~~----------------------------------- 276 (530)
T COG0488 256 ------------QQKE------------LAKEQEWIRRGKAAASK----------------------------------- 276 (530)
T ss_pred ------------HHHH------------HHHHHHHHHHHHhccch-----------------------------------
Confidence 0000 00000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcCCCCCcc
Q 000774 815 EIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNY--IELPSEAPL 892 (1293)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~--~~~~~e~~~ 892 (1293)
....+......+++.+. ...+.....
T Consensus 277 ----------------------------------------------------~k~a~sr~k~l~k~~~~~~~~~~~~~~~ 304 (530)
T COG0488 277 ----------------------------------------------------AKKAKSRIKRLEKLEARLAEERPVEEGK 304 (530)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHHhhhhhcccccccc
Confidence 00000000111111110 000110000
Q ss_pred ccCCCCCCCC-CCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECC
Q 000774 893 VIESNRPPPG-WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 971 (1293)
Q Consensus 893 ~~~~~~~~~~-~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g 971 (1293)
...-..+++. ...+..++++|++++|+++ +++++++||.|.+|+++||+||||+|||||+|+|.|...|.+|+|.++-
T Consensus 305 ~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~ 383 (530)
T COG0488 305 PLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE 383 (530)
T ss_pred cceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC
Confidence 0000001111 1123458999999999764 4799999999999999999999999999999999999999999999872
Q ss_pred eecCCCChHHHhhhceEEccccc-ccc-ccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCCh
Q 000774 972 FDIAKFGLMDLRKILGIIPQSPV-LFS-GTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 1048 (1293)
Q Consensus 972 ~~i~~~~~~~~r~~i~~v~Q~~~-lf~-~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSg 1048 (1293)
. -+|||++|+.. ++. .|+.+++.... ...+.+++..|.+.++. -+.. ......|||
T Consensus 384 ~-----------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~---------~~~~-~~~v~~LSG 442 (530)
T COG0488 384 T-----------VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT---------GEDQ-EKPVGVLSG 442 (530)
T ss_pred c-----------eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCC---------hHHH-hCchhhcCH
Confidence 1 36999999983 443 38888886443 22355566555554432 2222 445567999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeee-cC
Q 000774 1049 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DT 1126 (1293)
Q Consensus 1049 Gqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~-g~ 1126 (1293)
|||.||.||+.++.+|++||||||||+||.++.+.+.++|.+ .++|||+||||.++++. |++++++++ ++..+ |+
T Consensus 443 GEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~--f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 443 GEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD--FEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred hHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCC
Confidence 999999999999999999999999999999999999999998 68999999999999998 999999999 77777 89
Q ss_pred hhhhhhc
Q 000774 1127 PEELLSN 1133 (1293)
Q Consensus 1127 ~~el~~~ 1133 (1293)
++++.+.
T Consensus 520 y~~y~~~ 526 (530)
T COG0488 520 YEDYLEQ 526 (530)
T ss_pred HHHHHHh
Confidence 9888754
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=641.68 Aligned_cols=506 Identities=21% Similarity=0.280 Sum_probs=403.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHH
Q 000774 628 TIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMG 707 (1293)
Q Consensus 628 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~ 707 (1293)
.++.++.++..++.++..++....+.+...++|.+++++++++|+.+|+++++|++++|+++|++.+...+...+..++.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~ 119 (569)
T PRK10789 40 GTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVD 119 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444445566677777888888899999999999999999999999999999999999999999998766666666666
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHH
Q 000774 708 QVSQLLSTFVLI-GIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA 786 (1293)
Q Consensus 708 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~ 786 (1293)
.++..+..++++ ++++|.+.++++..+++.+.+...+.+..++..+......+.+.+.+.|.++|++++|+|+.++++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~ 199 (569)
T PRK10789 120 SLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQS 199 (569)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHH
Confidence 555444444444 4677766555544444444444444444444444455566778899999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000774 787 DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL--TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVL 864 (1293)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 864 (1293)
+++.+..+...+..........+..........+..++ ......+..+..+ .+.+..++.+...+..++..+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt-----~g~l~a~~~~~~~~~~pl~~l~ 274 (569)
T PRK10789 200 ALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLT-----LGQLTSFVMYLGLMIWPMLALA 274 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777666655554443333333222222221111 1111223344444 4445555666667777888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcC
Q 000774 865 RLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGR 944 (1293)
Q Consensus 865 ~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~ 944 (1293)
.....+.....+.+|+.++.+.+++.+.. ..+. .+..+.|+++||+|+|++..+++|+|+||+++|||++||+||
T Consensus 275 ~~~~~~~~~~~a~~ri~~ll~~~~~~~~~---~~~~--~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~ 349 (569)
T PRK10789 275 WMFNIVERGSAAYSRIRAMLAEAPVVKDG---SEPV--PEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGP 349 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCC---CCCC--CCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECC
Confidence 88888999999999999998765442111 0011 112356999999999975445799999999999999999999
Q ss_pred CCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhh
Q 000774 945 TGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAH 1023 (1293)
Q Consensus 945 ~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~ 1023 (1293)
||||||||+++|+|+++|++|+|.+||.++.++++..+|++|+|+||+|.+|++|++|||.++. +.++++++++++.++
T Consensus 350 sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~ 429 (569)
T PRK10789 350 TGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLAS 429 (569)
T ss_pred CCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999998764 468899999999999
Q ss_pred HHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecC
Q 000774 1024 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 1103 (1293)
Q Consensus 1024 l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~ 1103 (1293)
+++++.++|+|++|.+++.|.+||||||||++||||++++|+||||||||++||+++++.+++.|++..+++|+|+||||
T Consensus 430 l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~ 509 (569)
T PRK10789 430 VHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHR 509 (569)
T ss_pred CHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998788999999999
Q ss_pred cchhhccCEEEEEeCCeEeeecChhhhhhcCCChHHHHHHh
Q 000774 1104 LNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1144 (1293)
Q Consensus 1104 ~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~l~~~ 1144 (1293)
++.+..||+|++|++|++++.|+|++++++ .+.|++++..
T Consensus 510 ~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~ 549 (569)
T PRK10789 510 LSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRY 549 (569)
T ss_pred hhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHH
Confidence 999999999999999999999999999975 4678887764
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=645.24 Aligned_cols=491 Identities=24% Similarity=0.323 Sum_probs=423.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000774 17 IFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAP 95 (1293)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~~~~ 95 (1293)
++++.++..++.....+...+.+.++...+|..+|+++++.+..++++.+.|++.+++++|++.++.++ ..+..++...
T Consensus 60 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~ 139 (571)
T TIGR02203 60 VIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRET 139 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666667788999999999999999999999999999999999999999999999865 4566777777
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH
Q 000774 96 FRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKV 175 (1293)
Q Consensus 96 ~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~ 175 (1293)
+.++++++++++..++++++.++++++++.+..++.++.++..++..+..++..+.+.|.++|+++||.++.++.+.+++
T Consensus 140 ~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~ 219 (571)
T TIGR02203 140 LTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRF 219 (571)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHH
Confidence 77888888888888888888888888888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 176 QNVRNDELSWFRKAQFLAACNSFILNSIPV--LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVN 253 (1293)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~ 253 (1293)
++..++..+...+..........+...+.. .+.++++|++.+..|.+|+|.+++++.++..+..|+..+...+..+.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~ 299 (571)
T TIGR02203 220 DAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQR 299 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777666655555554444443332 234556778888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHH
Q 000774 254 ANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM 333 (1293)
Q Consensus 254 ~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l 333 (1293)
++++++|+.++++.+++......+..+....|+++||+|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|
T Consensus 300 ~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL 378 (571)
T TIGR02203 300 GLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLI 378 (571)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999999986554321111111223469999999999743 56899999999999999999999999999999999
Q ss_pred hcCCCCCCCCcee------------ecCcEEEEcCCccccCccHHHHHccCC--CCCHHHHHHHHHHcCChhHHhcCCCC
Q 000774 334 LGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGG 399 (1293)
Q Consensus 334 ~g~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g 399 (1293)
+|+++|++|.... +++.|+||||+|++|++|++|||.+++ +.++++++++++.+++++++..+|+|
T Consensus 379 ~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~g 458 (571)
T TIGR02203 379 PRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLG 458 (571)
T ss_pred HhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCc
Confidence 9999999984321 345799999999999999999999986 47889999999999999999999999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeE
Q 000774 400 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 479 (1293)
Q Consensus 400 ~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i 479 (1293)
++|.+|++|.+||||||||++||||++++|+|+|||||||+||+++++.+.+.+.+ ..+++|+|+||||.+.++.||+|
T Consensus 459 ldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~-~~~~~tiIiitH~~~~~~~~D~i 537 (571)
T TIGR02203 459 LDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALER-LMQGRTTLVIAHRLSTIEKADRI 537 (571)
T ss_pred ccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH-HhCCCEEEEEehhhHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999886654 45789999999999999999999
Q ss_pred EEEeCCeEEEecChHHHhhccHHHHHHHHH
Q 000774 480 ILVHEGMVKEEGTFEDLSNNGELFQKLMEN 509 (1293)
Q Consensus 480 ~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 509 (1293)
++|++|++++.|+|+++++..+.|++++..
T Consensus 538 i~l~~g~i~~~g~~~~l~~~~~~~~~~~~~ 567 (571)
T TIGR02203 538 VVMDDGRIVERGTHNELLARNGLYAQLHNM 567 (571)
T ss_pred EEEeCCEEEeeCCHHHHHHcCCHHHHHHHH
Confidence 999999999999999999888888887653
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-65 Score=639.48 Aligned_cols=495 Identities=20% Similarity=0.296 Sum_probs=410.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000774 14 AFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLW 92 (1293)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~ 92 (1293)
+++++++.++..++.+...+...+.+.++...+|..+|+|+++++..++.+.++|++++++++|++.++..+ ..+..++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~ 118 (569)
T PRK10789 39 IGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLV 118 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333444445555666555666778899999999999999999999999999999999999999999998754 3455555
Q ss_pred HHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 000774 93 SAPFRIIISLVLL-YNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSF 171 (1293)
Q Consensus 93 ~~~~~~i~~~~~l-~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~ 171 (1293)
..++.++++++++ +...|.++++.++++++++.+..++.++.++..++.++..++..+.+.|.++|+++||.|++|+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 198 (569)
T PRK10789 119 DSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQ 198 (569)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHH
Confidence 5545544454444 356666777777777777767777778888888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 172 QSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV--LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMIT 249 (1293)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~ 249 (1293)
.+++.+..++..+...+..........+...+.. .+.++++|++.+..|.+|+|.+++++.+...+..|+..++..+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~ 278 (569)
T PRK10789 199 SALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFN 278 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887776666655554444443333332222 23345677888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHH
Q 000774 250 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL 329 (1293)
Q Consensus 250 ~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTL 329 (1293)
.+..+..+++||.++++.+++........+.....|+++|++|+|+. .++++|+|+||++++|++++|+||||||||||
T Consensus 279 ~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~-~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL 357 (569)
T PRK10789 279 IVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQ-TDHPALENVNFTLKPGQMLGICGPTGSGKSTL 357 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECCC-CCCccccCeeEEECCCCEEEEECCCCCCHHHH
Confidence 99999999999999998654321111111112346999999999974 34689999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCcee------------ecCcEEEEcCCccccCccHHHHHccCC-CCCHHHHHHHHHHcCChhHHhcC
Q 000774 330 ISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSLQHDLDLL 396 (1293)
Q Consensus 330 l~~l~g~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~g~-~~~~~~~~~~~~~~~l~~~~~~l 396 (1293)
+++|+|+++|++|.... +++.|+||+|+|++|++|++|||.++. +.++++++++++.+++.+++..+
T Consensus 358 l~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~l 437 (569)
T PRK10789 358 LSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRL 437 (569)
T ss_pred HHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 99999999999984321 245799999999999999999999985 46788999999999999999999
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhC
Q 000774 397 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV 476 (1293)
Q Consensus 397 ~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~ 476 (1293)
|+|++|.+|++|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+.+ ..+++|+|+||||++.++.|
T Consensus 438 p~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~-~~~~~tii~itH~~~~~~~~ 516 (569)
T PRK10789 438 PQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ-WGEGRTVIISAHRLSALTEA 516 (569)
T ss_pred cCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHH-HhCCCEEEEEecchhHHHcC
Confidence 99999999999999999999999999999999999999999999999999999987654 45789999999999999999
Q ss_pred CeEEEEeCCeEEEecChHHHhhccHHHHHHHHHh
Q 000774 477 DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 510 (1293)
Q Consensus 477 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 510 (1293)
|+|++|++|++++.|+|++++++.+.|++++..+
T Consensus 517 d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 517 SEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred CEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 9999999999999999999999999999988754
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=649.76 Aligned_cols=436 Identities=21% Similarity=0.332 Sum_probs=330.6
Q ss_pred EEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------ecCcEEE
Q 000774 287 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTVAY 353 (1293)
Q Consensus 287 ~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~~~i~~ 353 (1293)
++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .+..++|
T Consensus 1 ~~nl~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFP---GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeC---CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 368999996 357999999999999999999999999999999999999999984321 1246999
Q ss_pred EcCCcccc-CccHHHHHccCCC------CCHH----HHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000774 354 VPQVSWIF-NATVRDNILFGSA------FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 422 (1293)
Q Consensus 354 v~Q~~~l~-~~Tv~eni~~g~~------~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialA 422 (1293)
++|++.++ ..||+||+.++.. .+.. +..++++..++.. .......+|||||||||+||
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-----------DPRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHHHHHHH
Confidence 99999775 6799999987631 1111 2233333333321 22344578999999999999
Q ss_pred HHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhhccH
Q 000774 423 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 501 (1293)
Q Consensus 423 ral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 501 (1293)
|||+.+|++|||||||++||+.+.+++++.+.+...+|+|+|+|||+++++.. ||+|++|++|++++.|+.+++....
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~- 225 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDK- 225 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHHH-
Confidence 99999999999999999999999999998766555568999999999999864 8999999999999877654321000
Q ss_pred HHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccccccchhhhhhhcCcccHHHHHHHHHH
Q 000774 502 LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDA 581 (1293)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~ 581 (1293)
.. .
T Consensus 226 ----~~------------------------------------------------------------------------~- 228 (491)
T PRK10982 226 ----II------------------------------------------------------------------------A- 228 (491)
T ss_pred ----HH------------------------------------------------------------------------H-
Confidence 00 0
Q ss_pred hchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 582 LGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 661 (1293)
Q Consensus 582 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 661 (1293)
T Consensus 229 -------------------------------------------------------------------------------- 228 (491)
T PRK10982 229 -------------------------------------------------------------------------------- 228 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 662 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 741 (1293)
Q Consensus 662 ~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 741 (1293)
++
T Consensus 229 ------------------------~~------------------------------------------------------ 230 (491)
T PRK10982 229 ------------------------MM------------------------------------------------------ 230 (491)
T ss_pred ------------------------HH------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 742 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 821 (1293)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1293)
+
T Consensus 231 --~----------------------------------------------------------------------------- 231 (491)
T PRK10982 231 --V----------------------------------------------------------------------------- 231 (491)
T ss_pred --h-----------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCC
Q 000774 822 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 901 (1293)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~ 901 (1293)
+. . . .+ ..+... . +
T Consensus 232 ------------~~-~---------------------~------------------~~-----~~~~~~-----~--~-- 245 (491)
T PRK10982 232 ------------GR-S---------------------L------------------TQ-----RFPDKE-----N--K-- 245 (491)
T ss_pred ------------CC-C---------------------c------------------cc-----cccccc-----C--C--
Confidence 00 0 0 00 000000 0 0
Q ss_pred CCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH
Q 000774 902 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 981 (1293)
Q Consensus 902 ~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 981 (1293)
+.+..|+++|++++| +++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++...++..
T Consensus 246 --~~~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 246 --PGEVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANE 319 (491)
T ss_pred --CCCcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHH
Confidence 011248999999974 25899999999999999999999999999999999999999999999999998766543
Q ss_pred -HhhhceEEccccc---ccc-ccHhhhc-----CCCCC----CCHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCC
Q 000774 982 -LRKILGIIPQSPV---LFS-GTVRFNL-----DPFSE----HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENF 1046 (1293)
Q Consensus 982 -~r~~i~~v~Q~~~---lf~-~ti~~nl-----~~~~~----~~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~L 1046 (1293)
+++.++|+||++. +|. .|+.+|. ..+.. ....+. ...+.++++.+ ++. ........+|
T Consensus 320 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~L 392 (491)
T PRK10982 320 AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRM-----KSDTQWVIDSM--RVKTPGHRTQIGSL 392 (491)
T ss_pred HHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHH-----HHHHHHHHHhc--CccCCCcccccccC
Confidence 4667999999963 565 3776663 21111 011111 12234455554 332 2346667889
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeee
Q 000774 1047 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 1124 (1293)
Q Consensus 1047 SgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~ 1124 (1293)
|||||||++||||++.+|+||||||||+|||+.+.+.+++.|+++. +++|||+|||+++++.. |||+++|++|+++..
T Consensus 393 SgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998864 57999999999999877 999999999999988
Q ss_pred cChhhh
Q 000774 1125 DTPEEL 1130 (1293)
Q Consensus 1125 g~~~el 1130 (1293)
++++++
T Consensus 473 ~~~~~~ 478 (491)
T PRK10982 473 VDTKTT 478 (491)
T ss_pred EccccC
Confidence 776433
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=646.42 Aligned_cols=199 Identities=24% Similarity=0.300 Sum_probs=164.9
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ + .+||
T Consensus 324 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i~ 390 (556)
T PRK11819 324 VIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKLA 390 (556)
T ss_pred EEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEEE
Confidence 59999999999753 699999999999999999999999999999999999999999999954 2 1599
Q ss_pred EEcccc-cccc-ccHhhhcCCCCCC-----CHHHHHHHHHHhhHHHHHHHccCCcch-hhhcCCCCCChhHHHHHHHHHH
Q 000774 988 IIPQSP-VLFS-GTVRFNLDPFSEH-----SDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQRQLLSLSRA 1059 (1293)
Q Consensus 988 ~v~Q~~-~lf~-~ti~~nl~~~~~~-----~~~~~~~~l~~~~l~~~i~~lp~gl~~-~~~~~~~~LSgGqkqrl~lAra 1059 (1293)
|+||++ .++. .|+++|+.+.... .+.+.. ..++.+ |+.. ..+.....||||||||++||||
T Consensus 391 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 391 YVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSR---------AYVGRF--NFKGGDQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEeCchhhcCCCCCHHHHHHhhcccccccccHHHHH---------HHHHhC--CCChhHhcCchhhCCHHHHHHHHHHHH
Confidence 999997 5665 4999998643211 111112 233433 4432 3455677899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeC-CeEee-ecChhhhhh
Q 000774 1060 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDS-GRVLE-YDTPEELLS 1132 (1293)
Q Consensus 1060 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~-G~i~~-~g~~~el~~ 1132 (1293)
++.+|++|||||||++||+.+.+.+++.|++. .+|||+|||+++++.. ||+|++|++ |++.+ .|+++++++
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEF--PGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 99999999999999999999999999999985 3599999999999887 999999985 88874 588888764
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=648.24 Aligned_cols=441 Identities=24% Similarity=0.354 Sum_probs=331.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 351 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i 351 (1293)
.|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 4899999999963 46999999999999999999999999999999999999999985321 01248
Q ss_pred EEEcCCccc--c-------CccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000774 352 AYVPQVSWI--F-------NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 422 (1293)
Q Consensus 352 ~~v~Q~~~l--~-------~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialA 422 (1293)
+|++|++.+ + ..|+++|+.++.. ..+++.++++..++.+..+. ...+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLDR-----------RFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhhhC-----------CcccCCHHHHHHHHHH
Confidence 999998643 2 4699999876421 23456667777776544333 3368999999999999
Q ss_pred HHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhhccH
Q 000774 423 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 501 (1293)
Q Consensus 423 ral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 501 (1293)
|||+.+|++|||||||++||+.+.+++.+.+.+...+|+|+|+|||+++++.. ||+|++|++|+++..|+++++.+...
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 227 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQAL 227 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcchh
Confidence 99999999999999999999999999998776655568999999999999865 89999999999999887665432100
Q ss_pred HHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccccccchhhhhhhcCcccHHHHHHHHHH
Q 000774 502 LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDA 581 (1293)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~ 581 (1293)
...+...
T Consensus 228 -~~~~~~~------------------------------------------------------------------------ 234 (490)
T PRK10938 228 -VAQLAHS------------------------------------------------------------------------ 234 (490)
T ss_pred -hhhhhhh------------------------------------------------------------------------
Confidence 0000000
Q ss_pred hchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 582 LGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 661 (1293)
Q Consensus 582 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 661 (1293)
T Consensus 235 -------------------------------------------------------------------------------- 234 (490)
T PRK10938 235 -------------------------------------------------------------------------------- 234 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 662 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 741 (1293)
Q Consensus 662 ~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 741 (1293)
T Consensus 235 -------------------------------------------------------------------------------- 234 (490)
T PRK10938 235 -------------------------------------------------------------------------------- 234 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 742 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 821 (1293)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1293)
+. +.
T Consensus 235 -------~~-------------------~~-------------------------------------------------- 238 (490)
T PRK10938 235 -------EQ-------------------LE-------------------------------------------------- 238 (490)
T ss_pred -------hc-------------------cC--------------------------------------------------
Confidence 00 00
Q ss_pred HHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-CccccCCCCCC
Q 000774 822 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSE-APLVIESNRPP 900 (1293)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e-~~~~~~~~~~~ 900 (1293)
.. +.+.. .+.. .. ...
T Consensus 239 ------------------------------------------------------------~~-~~~~~~~~~~-~~-~~~ 255 (490)
T PRK10938 239 ------------------------------------------------------------GV-QLPEPDEPSA-RH-ALP 255 (490)
T ss_pred ------------------------------------------------------------cc-ccCccccccc-cc-ccC
Confidence 00 00000 0000 00 000
Q ss_pred CCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-CcceEEECCeecCC-CC
Q 000774 901 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDIAK-FG 978 (1293)
Q Consensus 901 ~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-~~G~I~i~g~~i~~-~~ 978 (1293)
.....++++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.++.. .+
T Consensus 256 ---~~~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 256 ---ANEPRIVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred ---CCCceEEEeceEEEECCe--eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCC
Confidence 011248999999999753 599999999999999999999999999999999998876 69999999987632 23
Q ss_pred hHHHhhhceEEcccccccc---ccHhhhcCC--CC------CCCHHHHHHHHHHhhHHHHHHHccCCcch-hhhcCCCCC
Q 000774 979 LMDLRKILGIIPQSPVLFS---GTVRFNLDP--FS------EHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENF 1046 (1293)
Q Consensus 979 ~~~~r~~i~~v~Q~~~lf~---~ti~~nl~~--~~------~~~~~~~~~~l~~~~l~~~i~~lp~gl~~-~~~~~~~~L 1046 (1293)
....|++|+|+||++.++. .|+++++.. .. ....+ . ...+.+.++.+ |++. .......+|
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~l~~~--~l~~~~~~~~~~~L 402 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDR-Q-----QKLAQQWLDIL--GIDKRTADAPFHSL 402 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHH-H-----HHHHHHHHHHc--CCchhhccCchhhC
Confidence 3456788999999986542 367766532 11 01111 0 11123344442 4544 455666789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-cEEEEEecCcchhhc--cCEEEEEeCCeEe
Q 000774 1047 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-S-CTMLIIAHRLNTIID--CDRILLLDSGRVL 1122 (1293)
Q Consensus 1047 SgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~-~tvi~vtH~~~~~~~--~d~i~vl~~G~i~ 1122 (1293)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ + .|||+|||+++++.. ||++++|++|+++
T Consensus 403 SgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 403 SWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIY 482 (490)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceE
Confidence 99999999999999999999999999999999999999999998753 4 479999999999964 8999999999998
Q ss_pred ee
Q 000774 1123 EY 1124 (1293)
Q Consensus 1123 ~~ 1124 (1293)
+.
T Consensus 483 ~~ 484 (490)
T PRK10938 483 RY 484 (490)
T ss_pred Ee
Confidence 75
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-65 Score=633.31 Aligned_cols=518 Identities=24% Similarity=0.297 Sum_probs=410.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCCC-cCCC-Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 588 VLILLLCYFLTETLRVSSSTWLSYWTDQSS-LKTH-GP-LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 664 (1293)
Q Consensus 588 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 664 (1293)
+.+.+++.++...+....|+.+++.+|... .... .. ..+...+.++.++..++.++..++....+.+...++|.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 84 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLL 84 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777887777776542 1111 11 12334455566677788899999999999999999999999
Q ss_pred HHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 665 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 744 (1293)
Q Consensus 665 ~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 744 (1293)
+++++.|..+|++.++|++++|+++|++.+++.+...+..++..++.++..+++++..+|.+.++++..+++...+...+
T Consensus 85 ~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~ 164 (529)
T TIGR02857 85 AAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILI 164 (529)
T ss_pred HHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888777777777777777777788888876655544433333333344
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 745 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL 824 (1293)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1293)
.+..++..+......+...+.+.|+++|+++||+|+.++++.+++.+..+...+..........+......++..+..++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (529)
T TIGR02857 165 GWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVAL 244 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555667888999999999999999999999888888777766655554444444444444433322222
Q ss_pred ---HHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCC
Q 000774 825 ---TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 901 (1293)
Q Consensus 825 ---~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~ 901 (1293)
.+.+.+. .+..+ .+.+..++.+...+..++..+......+.....+.+|+.++++.+++... . .+.
T Consensus 245 ~~~~~~~~~~-~g~~t-----~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~-~~~- 313 (529)
T TIGR02857 245 VAVYIGFRLL-AGDLD-----LATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---K-APV- 313 (529)
T ss_pred HHHHHHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---C-cCC-
Confidence 2222222 44443 34444555666677778888888889999999999999999875432211 1 111
Q ss_pred CCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH
Q 000774 902 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 981 (1293)
Q Consensus 902 ~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 981 (1293)
..+..+.|+++||+|+|+++.+++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.+||.|+++++.++
T Consensus 314 ~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~ 393 (529)
T TIGR02857 314 TAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADS 393 (529)
T ss_pred CCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHH
Confidence 11123469999999999765447999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhceEEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 982 LRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 982 ~r~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
+|++|+||||+|.+|++||+|||.+.. ..++++++++++.++++++++++|+|+||.+++.|.+||||||||++||||+
T Consensus 394 lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal 473 (529)
T TIGR02857 394 WRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAF 473 (529)
T ss_pred HHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998754 4678999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEE
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 1116 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl 1116 (1293)
+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|
T Consensus 474 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 474 LRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999999987899999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-65 Score=651.03 Aligned_cols=493 Identities=21% Similarity=0.308 Sum_probs=421.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000774 14 AFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLW 92 (1293)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~ 92 (1293)
+++++++.++..++.....+...+++.++...++..+|+|++++|..++++.++|++++++ +|++.+++++ ..+..++
T Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~ 260 (694)
T TIGR01846 182 ALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVV 260 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence 3344445555666777777778889999999999999999999999999999999999999 6999999865 3445555
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHH
Q 000774 93 SAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQ 172 (1293)
Q Consensus 93 ~~~~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~ 172 (1293)
...+.+++.+++++++.++++++.++++++++.+..++.++.++..++..+..++..+.+.|.++|+++||.+|.|+.+.
T Consensus 261 ~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~ 340 (694)
T TIGR01846 261 LDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQ 340 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHH
Confidence 45555555667777888888888887777777777788888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 173 SKVQNVRNDELSWFRKAQFLAACNSFILNSIPV--LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQ 250 (1293)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~ 250 (1293)
+++.+..++..+...+..........+...+.. .+.++++|++.+..|.+|+|.++++..+...+..|+..+...+..
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~ 420 (694)
T TIGR01846 341 NRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQD 420 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888777766666665555544444332 234566788888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccCCCC-CCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHH
Q 000774 251 VVNANVSLKRMEEFLLAEEKILLPNP-PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL 329 (1293)
Q Consensus 251 ~~~~~~s~~Ri~~~l~~~~~~~~~~~-~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTL 329 (1293)
++++..+++|+.++++.+++...... ..+.....|+++||+|+|++ +++++|+|+||+|++||++||+|+||||||||
T Consensus 421 ~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~-~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL 499 (694)
T TIGR01846 421 FQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAP-DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTL 499 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCC-CCccccccceEEECCCCEEEEECCCCCCHHHH
Confidence 99999999999999987654321111 11122346999999999974 34679999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCce------------eecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcC
Q 000774 330 ISAMLGELPPVSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLL 396 (1293)
Q Consensus 330 l~~l~g~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l 396 (1293)
+++|+|+++|++|... .+|+.|+||||++++|++||+|||.++.+ .++++++++++.+++.++++.+
T Consensus 500 ~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~l 579 (694)
T TIGR01846 500 TKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISEL 579 (694)
T ss_pred HHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhC
Confidence 9999999999998432 13557999999999999999999999864 6788999999999999999999
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhC
Q 000774 397 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV 476 (1293)
Q Consensus 397 ~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~ 476 (1293)
|+|++|.+|++|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+.+ ..+++|+|+||||++.++.|
T Consensus 580 p~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~ 658 (694)
T TIGR01846 580 PQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMRE-ICRGRTVIIIAHRLSTVRAC 658 (694)
T ss_pred cCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHH-HhCCCEEEEEeCChHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999987654 45789999999999999999
Q ss_pred CeEEEEeCCeEEEecChHHHhhccHHHHHHHHH
Q 000774 477 DRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 509 (1293)
Q Consensus 477 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 509 (1293)
|+|++|++|++++.|+|+++++.++.|++++..
T Consensus 659 d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 691 (694)
T TIGR01846 659 DRIIVLEKGQIAESGRHEELLALQGLYARLWQQ 691 (694)
T ss_pred CEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHh
Confidence 999999999999999999999999999998764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-66 Score=642.90 Aligned_cols=481 Identities=22% Similarity=0.261 Sum_probs=331.0
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-ecCcEEEEcCCcccc-
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-IRGTVAYVPQVSWIF- 361 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-~~~~i~~v~Q~~~l~- 361 (1293)
.++++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.... .+..||||+|+++++
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 5899999999962 357999999999999999999999999999999999999999995433 234699999999987
Q ss_pred CccHHHHHccCCCC------------------CH---------HHHHHHHHHcCChh-------HHhcCCCCCcccccCC
Q 000774 362 NATVRDNILFGSAF------------------EP---------ARYEKAIDVTSLQH-------DLDLLPGGDVTEIGER 407 (1293)
Q Consensus 362 ~~Tv~eni~~g~~~------------------~~---------~~~~~~~~~~~l~~-------~~~~l~~g~~t~ig~~ 407 (1293)
+.||+|||.++... .. .++.++++.++..+ .++.+ |.. .....
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~-~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RCP-PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CCC-cccCc
Confidence 56999999875210 00 12233333333221 12221 111 12455
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCe
Q 000774 408 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 486 (1293)
Q Consensus 408 g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~ 486 (1293)
..+||||||||++|||||+.+|++|||||||++||+.+.+++.+.+.+. ++|+|+|||+++++.. ||+|++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 6799999999999999999999999999999999999999998865432 3699999999999986 79999999999
Q ss_pred EE-EecChHHHhhccHHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccccccchhhhhh
Q 000774 487 VK-EEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEER 565 (1293)
Q Consensus 487 i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (1293)
++ ..|+++++.+....-...... +
T Consensus 236 i~~~~g~~~~~~~~~~~~~~~~~~-----~-------------------------------------------------- 260 (552)
T TIGR03719 236 GIPWEGNYSSWLEQKEKRLEQEEK-----E-------------------------------------------------- 260 (552)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHH-----H--------------------------------------------------
Confidence 76 678888765421100000000 0
Q ss_pred hcCcccHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 000774 566 ETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANS 645 (1293)
Q Consensus 566 ~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 645 (1293)
+...-
T Consensus 261 ---------~~~~~------------------------------------------------------------------ 265 (552)
T TIGR03719 261 ---------ESARQ------------------------------------------------------------------ 265 (552)
T ss_pred ---------HHHHH------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 646 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTM 725 (1293)
Q Consensus 646 ~~~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1293)
T Consensus 266 -------------------------------------------------------------------------------- 265 (552)
T TIGR03719 266 -------------------------------------------------------------------------------- 265 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 726 SLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 805 (1293)
Q Consensus 726 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1293)
++.++.. +++..... ......
T Consensus 266 -----------------------~~~~~~~------------~~~~~~~~----~~~~~~-------------------- 286 (552)
T TIGR03719 266 -----------------------KALKREL------------EWVRSSPK----ARQAKS-------------------- 286 (552)
T ss_pred -----------------------HHHHHHH------------HHHHhhhh----hHHHHH--------------------
Confidence 0000000 00000000 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000774 806 ANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE 885 (1293)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~ 885 (1293)
+......++..+. .
T Consensus 287 -----------------------------------------------------------------~~~~~~~~~~~~~-~ 300 (552)
T TIGR03719 287 -----------------------------------------------------------------KARLARYEELLSQ-E 300 (552)
T ss_pred -----------------------------------------------------------------HHHHHHHHhhhhh-c
Confidence 0000000000000 0
Q ss_pred CCCCCccccCCCCCCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcc
Q 000774 886 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 965 (1293)
Q Consensus 886 ~~~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G 965 (1293)
+...+.......+....+.+..++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|
T Consensus 301 -~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G 377 (552)
T TIGR03719 301 -FQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG 377 (552)
T ss_pred -ccccCCCceeecCCCCCCCCeEEEEeeEEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCe
Confidence 00000000000000000112359999999999753 699999999999999999999999999999999999999999
Q ss_pred eEEECCeecCCCChHHHhhhceEEccccc-ccc-ccHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcch-hh
Q 000774 966 RILIDGFDIAKFGLMDLRKILGIIPQSPV-LFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDA-QV 1039 (1293)
Q Consensus 966 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~-~ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~~-~~ 1039 (1293)
+|.+++ + .+|||+||++. ++. .|+++|+..... ....+ ....+.++.+ |+.. ..
T Consensus 378 ~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~ 437 (552)
T TIGR03719 378 TIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKRE-------VPSRAYVGRF--NFKGSDQ 437 (552)
T ss_pred EEEECC-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcch-------HHHHHHHHhC--CCChhHh
Confidence 999954 2 16999999973 664 499999864321 11111 0112334443 4432 34
Q ss_pred hcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeC
Q 000774 1040 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDS 1118 (1293)
Q Consensus 1040 ~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~ 1118 (1293)
......||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++ ++|||+|||+++++.. ||+|++|++
T Consensus 438 ~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~~viivsHd~~~~~~~~d~i~~l~~ 515 (552)
T TIGR03719 438 QKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF--AGCAVVISHDRWFLDRIATHILAFEG 515 (552)
T ss_pred cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5566789999999999999999999999999999999999999999999986 3589999999999987 999999996
Q ss_pred -CeEee-ecChhhhhh
Q 000774 1119 -GRVLE-YDTPEELLS 1132 (1293)
Q Consensus 1119 -G~i~~-~g~~~el~~ 1132 (1293)
|++.. .|+++++.+
T Consensus 516 ~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 516 DSHVEWFEGNYSEYEE 531 (552)
T ss_pred CCeEEEeCCCHHHHHH
Confidence 68774 477766653
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-65 Score=681.61 Aligned_cols=494 Identities=18% Similarity=0.238 Sum_probs=393.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcC--CChhHHHHHHHHHHHHHHHHH-HHHH
Q 000774 13 YAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKN--FASGKITNLMTTDAEQLQQVC-QALH 89 (1293)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~--~~~G~l~~~l~~Dv~~l~~~~-~~l~ 89 (1293)
++++++++.++..++.....+...+++.++...+|..+|+++++++..++++ .++|++++++++|++.++.++ ..+.
T Consensus 868 ~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~ 947 (1466)
T PTZ00265 868 YSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIV 947 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343444444555556666667778999999999999999999999999975 889999999999999999865 4555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHH
Q 000774 90 TLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLT-KE-----------------GLQRTDKRIGL 151 (1293)
Q Consensus 90 ~~~~~~~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~ 151 (1293)
.++..++.++++++++++..|.++++.++++ +++..++.++.+... ++ ..+..++....
T Consensus 948 ~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1024 (1466)
T PTZ00265 948 IFTHFIVLFLVSMVMSFYFCPIVAAVLTGTY---FIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFL 1024 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHH
Confidence 6666666677777777777666655543222 222333333322211 11 11224556788
Q ss_pred HHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHH
Q 000774 152 MNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV--LVTVVSFGMFTLLGGDLTPARAFT 229 (1293)
Q Consensus 152 ~~e~l~gi~~IK~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~lt~~~~~~ 229 (1293)
+.|.++|+++||+|+.|+.+.+++.+..+...+...+.....++...+..++.. .+.++++|++++..|.+++|.+++
T Consensus 1025 ~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~ 1104 (1466)
T PTZ00265 1025 IQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMK 1104 (1466)
T ss_pred HHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 999999999999999999999999988877766666555555554444444333 245567889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCC---CCC---CCCCCCcEEEEeeEEEcCCCCCCCce
Q 000774 230 SLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP---NPP---LTSGLPAISIRNGYFSWDSKAERPTL 303 (1293)
Q Consensus 230 ~l~~~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~---~~~---~~~~~~~i~~~~~~~~y~~~~~~~~l 303 (1293)
++.++.....++..+...+..+.++.++++|+.++++.+++.... ... .......|+|+||+|+|++++++++|
T Consensus 1105 ~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL 1184 (1466)
T PTZ00265 1105 SLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIY 1184 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccc
Confidence 876665555678889999999999999999999999865432111 110 01112469999999999854456899
Q ss_pred eceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC--------------------------------------------
Q 000774 304 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-------------------------------------------- 339 (1293)
Q Consensus 304 ~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~-------------------------------------------- 339 (1293)
+|+||+|++|+++|||||||||||||+++|+|+|+|
T Consensus 1185 ~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 (1466)
T PTZ00265 1185 KDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEG 1264 (1466)
T ss_pred cCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999998
Q ss_pred ----------CCCCce------------eecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcC
Q 000774 340 ----------VSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLL 396 (1293)
Q Consensus 340 ----------~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l 396 (1293)
++|.+. .+|+.||||||+|+||++||+|||.+|.+ .++++++++++.+++++++..+
T Consensus 1265 ~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~L 1344 (1466)
T PTZ00265 1265 GSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESL 1344 (1466)
T ss_pred ccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 355321 14667999999999999999999999964 6789999999999999999999
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhhh
Q 000774 397 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ 475 (1293)
Q Consensus 397 ~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~-~~~~tvi~vtH~~~~l~~ 475 (1293)
|+|++|.+||+|.+|||||||||||||||+++|+|||||||||+||+++++.|.+.+.+.. .+++|+|+||||++.++.
T Consensus 1345 P~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~ 1424 (1466)
T PTZ00265 1345 PNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR 1424 (1466)
T ss_pred ccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999988665443 368999999999999999
Q ss_pred CCeEEEEeC----CeEE-EecChHHHhh-ccHHHHHHHHH
Q 000774 476 VDRIILVHE----GMVK-EEGTFEDLSN-NGELFQKLMEN 509 (1293)
Q Consensus 476 ~d~i~~l~~----G~i~-~~g~~~~l~~-~~~~~~~~~~~ 509 (1293)
||+|++|++ |+++ ++|+|+||++ .++.|++++..
T Consensus 1425 aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~ 1464 (1466)
T PTZ00265 1425 SDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464 (1466)
T ss_pred CCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhh
Confidence 999999999 9955 8999999998 58999998864
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=635.11 Aligned_cols=481 Identities=21% Similarity=0.290 Sum_probs=401.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 000774 27 CEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRIIISLVLL 105 (1293)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~~~~~~~i~~~~~l 105 (1293)
......+...+...+++..++..+|+|++++|..++.+.++|++++++++|++.+...+ ..+..++..++.+++.++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (588)
T PRK13657 72 AGVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLA 151 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445567778888889999999999999999999999999999999999998754 34445555555555555666
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 000774 106 YNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSW 185 (1293)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~~~~~~~~~ 185 (1293)
+...++++++.++++++.+.+..++.++.++..++..+..++..+.+.|.++|+++||.|+.++.+.+++.+..++..+.
T Consensus 152 ~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~ 231 (588)
T PRK13657 152 LFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAA 231 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 66677777777777777677777788888888888888999999999999999999999999999888888877776665
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 186 FRKAQFLAACNSFILNSIP--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEE 263 (1293)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~ 263 (1293)
..+..........+...+. ..+.++++|++.+..|.+++|.+++++.++..+..|+..+...+..+..+..+++|+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~ 311 (588)
T PRK13657 232 QMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFE 311 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444443333333322222 23445667888888999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcccC-CCC-CCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 000774 264 FLLAEEKILL-PNP-PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 341 (1293)
Q Consensus 264 ~l~~~~~~~~-~~~-~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~ 341 (1293)
+++.+++... +.. ........|+++|++|+|++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++
T Consensus 312 l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~ 389 (588)
T PRK13657 312 VEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS 389 (588)
T ss_pred HhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 9876443211 111 11112236999999999973 3579999999999999999999999999999999999999999
Q ss_pred CCce------------eecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCCCcccccCCC
Q 000774 342 DASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 408 (1293)
Q Consensus 342 g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g 408 (1293)
|... .+++.|+||||+|++|++||+|||.++++ .++++++++++.+++.++++.+|+|++|.+|++|
T Consensus 390 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g 469 (588)
T PRK13657 390 GRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG 469 (588)
T ss_pred CEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCC
Confidence 8432 13467999999999999999999999964 6788899999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEE
Q 000774 409 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVK 488 (1293)
Q Consensus 409 ~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~ 488 (1293)
.+||||||||++|||||+++|+|+|||||||+||+++++.+++.+.+ ..+++|+|+||||++.++.||+|++|++|+++
T Consensus 470 ~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~ 548 (588)
T PRK13657 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDE-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVV 548 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999887654 44689999999999999999999999999999
Q ss_pred EecChHHHhhccHHHHHHHHHh
Q 000774 489 EEGTFEDLSNNGELFQKLMENA 510 (1293)
Q Consensus 489 ~~g~~~~l~~~~~~~~~~~~~~ 510 (1293)
+.|+|+++++..+.|++++..+
T Consensus 549 ~~g~~~~l~~~~~~y~~l~~~~ 570 (588)
T PRK13657 549 ESGSFDELVARGGRFAALLRAQ 570 (588)
T ss_pred EeCCHHHHHHCCChHHHHHHHh
Confidence 9999999998889999988754
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-66 Score=650.49 Aligned_cols=203 Identities=21% Similarity=0.325 Sum_probs=166.2
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.|+++||+++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.+ |.++ .||
T Consensus 319 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDGK--QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECCe--EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 48999999999753 6999999999999999999999999999999999999999999998 4322 599
Q ss_pred EEcccc-ccccc-cHhhhcCCCCC-CCHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccC
Q 000774 988 IIPQSP-VLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRR 1063 (1293)
Q Consensus 988 ~v~Q~~-~lf~~-ti~~nl~~~~~-~~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~~ 1063 (1293)
|++|++ .++.. |+.+|+..... ...... ...+.+.+..+ ++. .........|||||||||+|||||+.+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGekqRl~la~al~~~ 458 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGR-----PRHVLGYLQDF--LFHPKRAMTPVKALSGGERNRLLLARLFLKP 458 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccch-----HHHHHHHHHhc--CCCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 999986 46654 99999864221 100000 01123344443 332 234556678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEe-CCeEeee-cChhhhhh
Q 000774 1064 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD-SGRVLEY-DTPEELLS 1132 (1293)
Q Consensus 1064 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~-~G~i~~~-g~~~el~~ 1132 (1293)
|++|||||||++||+.+.+.+.+.|++. ++|||+||||++++.. ||+|++|+ +|++..+ |++++++.
T Consensus 459 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 459 SNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 9999999999999999999999999884 6799999999999977 99999998 8999876 89999864
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-64 Score=631.63 Aligned_cols=489 Identities=24% Similarity=0.350 Sum_probs=410.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000774 20 GVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRI 98 (1293)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~~~~~~~ 98 (1293)
+.++..++.....+...+++.++...+|..+|+|++++|..++++.+.|++++++++|++.+++++ ..+..++...+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~ 146 (576)
T TIGR02204 67 VALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMC 146 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666778999999999999999999999999999999999999999999999875 3455656666667
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Q 000774 99 IISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNV 178 (1293)
Q Consensus 99 i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~~ 178 (1293)
++++++++...++++++.++.+++.+.+..++.+++++..++..+..++..+.+.|.++|+++||.+++|+.+.+++++.
T Consensus 147 ~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~ 226 (576)
T TIGR02204 147 IGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGA 226 (576)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHH
Confidence 77777777777777777666666666666778888888899999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 179 RNDELSWFRKAQFLAACNSFILNSIP--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANV 256 (1293)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~ 256 (1293)
.++..+...+......+...+...+. ..+.++++|++.+..|.+++|.++++..+...+..|+..++..+..+.++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~ 306 (576)
T TIGR02204 227 VEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAG 306 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776665554444443333332222 2334456788888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccCC-CC-C-CCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHH
Q 000774 257 SLKRMEEFLLAEEKILLP-NP-P-LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM 333 (1293)
Q Consensus 257 s~~Ri~~~l~~~~~~~~~-~~-~-~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l 333 (1293)
+++|+.++++.+++.... .+ . ..+....|+++||+|+|+++.++++|+|+||+++|||+++|+|+||||||||+++|
T Consensus 307 ~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL 386 (576)
T TIGR02204 307 AAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLL 386 (576)
T ss_pred HHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 999999999865432111 11 0 11112359999999999753346899999999999999999999999999999999
Q ss_pred hcCCCCCCCCcee------------ecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCCC
Q 000774 334 LGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGD 400 (1293)
Q Consensus 334 ~g~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~ 400 (1293)
+|+++|++|.... +++.|+|+||+|++|++||+|||.++.+ .++++++++++.+++.++++.+|+|+
T Consensus 387 ~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl 466 (576)
T TIGR02204 387 LRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGY 466 (576)
T ss_pred HhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCC
Confidence 9999999984321 2457999999999999999999999865 56789999999999999999999999
Q ss_pred cccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEE
Q 000774 401 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480 (1293)
Q Consensus 401 ~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~ 480 (1293)
+|.+|++|.+||||||||++||||++++|++||||||||+||+++++.+++.+.+ ..+++|+|+||||++.++.+|+|+
T Consensus 467 ~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~-~~~~~t~IiitH~~~~~~~~d~vi 545 (576)
T TIGR02204 467 DTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALET-LMKGRTTLIIAHRLATVLKADRIV 545 (576)
T ss_pred CceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEE
Confidence 9999999999999999999999999999999999999999999999999876654 457899999999999999999999
Q ss_pred EEeCCeEEEecChHHHhhccHHHHHHHHH
Q 000774 481 LVHEGMVKEEGTFEDLSNNGELFQKLMEN 509 (1293)
Q Consensus 481 ~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 509 (1293)
++++|++++.|+|+++.+.++.|++++..
T Consensus 546 ~l~~g~~~~~g~~~~l~~~~~~~~~l~~~ 574 (576)
T TIGR02204 546 VMDQGRIVAQGTHAELIAKGGLYARLARL 574 (576)
T ss_pred EEECCEEEeeecHHHHHHcCChHHHHHhh
Confidence 99999999999999999999989887753
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=624.25 Aligned_cols=485 Identities=19% Similarity=0.269 Sum_probs=406.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000774 23 LGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRIIIS 101 (1293)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~~~~~~~i~~ 101 (1293)
+..+......+...++..+++..++..+|+|++++|..++++.++|++++++++|++.++.++ ..+..++..++.++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~ 147 (585)
T TIGR01192 68 FNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLL 147 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555668888899999999999999999999999999999999999999998765 3445555556666666
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHH
Q 000774 102 LVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRND 181 (1293)
Q Consensus 102 ~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~~~~~ 181 (1293)
+++++...|.++++.++++++++.+..++.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++.+..++
T Consensus 148 ~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~ 227 (585)
T TIGR01192 148 IPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNN 227 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHH
Confidence 66777788888888777777777777788888888888888889999999999999999999999999998888887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 182 ELSWFRKAQFLAACNSFILNSIPV--LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLK 259 (1293)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~s~~ 259 (1293)
..+...+......+...+...+.. .+.++++|++.+..|.+++|.+++++.++..+..|+..+...+..+..+..+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 307 (585)
T TIGR01192 228 LLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLE 307 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665544444444433333332222 234556788888899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccCC-CC-CCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 000774 260 RMEEFLLAEEKILLP-NP-PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 260 Ri~~~l~~~~~~~~~-~~-~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~ 337 (1293)
|+.++++.+++.... .+ ..+.....++++|++|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|++
T Consensus 308 ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 308 DFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred HHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC
Confidence 999998765432111 11 11112235999999999973 357999999999999999999999999999999999999
Q ss_pred CCCCCCcee------------ecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCCCcccc
Q 000774 338 PPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404 (1293)
Q Consensus 338 ~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~i 404 (1293)
+|++|.... +++.++||||+|++|++|++|||.++.+ .++++++++++.+++.+++..+|+|++|.+
T Consensus 386 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~ 465 (585)
T TIGR01192 386 DPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLV 465 (585)
T ss_pred CCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchh
Confidence 999984321 3457999999999999999999999854 567888999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeC
Q 000774 405 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 484 (1293)
Q Consensus 405 g~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~ 484 (1293)
|++|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+. ...+++|+|+||||++.++.||+|++|++
T Consensus 466 ~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~-~~~~~~tvI~isH~~~~~~~~d~i~~l~~ 544 (585)
T TIGR01192 466 GERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAID-ALRKNRTTFIIAHRLSTVRNADLVLFLDQ 544 (585)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH-HHhCCCEEEEEEcChHHHHcCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999987654 44568999999999999999999999999
Q ss_pred CeEEEecChHHHhhccHHHHHHHHHh
Q 000774 485 GMVKEEGTFEDLSNNGELFQKLMENA 510 (1293)
Q Consensus 485 G~i~~~g~~~~l~~~~~~~~~~~~~~ 510 (1293)
|++++.|+|+++.++++.|++++..+
T Consensus 545 G~i~~~g~~~~l~~~~~~y~~l~~~~ 570 (585)
T TIGR01192 545 GRLIEKGSFQELIQKDGRFYKLLRRS 570 (585)
T ss_pred CEEEEECCHHHHHHCCChHHHHHHhC
Confidence 99999999999999999999988754
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-64 Score=624.78 Aligned_cols=447 Identities=22% Similarity=0.273 Sum_probs=372.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000774 20 GVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRI 98 (1293)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~~-~l~~~~~~~~~~ 98 (1293)
+.++..++.+...+...+.+.++...+|..+|+|++++|..++++.++|++++++++|++.++..+. .+..++..++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556667788899999999999999999999999999999999999999999998664 455566666667
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHH
Q 000774 99 IISLVLLYNELGVASLLGALLLVFMFPVQTFII-SRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQN 177 (1293)
Q Consensus 99 i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~ 177 (1293)
+++++++++..|.++++.++.++++.++..++. +..++..++..+..++..+.+.|.++|+++||.|++|+.+.+++++
T Consensus 142 ~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 221 (529)
T TIGR02868 142 SAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEA 221 (529)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHH
Confidence 777777777777777777666555544443443 3445566777788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 178 VRNDELSWFRKAQFLAACNSFILNSIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 255 (1293)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~ 255 (1293)
..++..+...+..........+...+..+ +.++++|++.+..|.+++|.+++++.+...+..|+..++..+..+.++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (529)
T TIGR02868 222 ADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVR 301 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777666666655555444443322 3345667788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcccCCC---C-CCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHH
Q 000774 256 VSLKRMEEFLLAEEKILLPN---P-PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS 331 (1293)
Q Consensus 256 ~s~~Ri~~~l~~~~~~~~~~---~-~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~ 331 (1293)
.+++|+.++++.+++..... + ...+....|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||++
T Consensus 302 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~ 379 (529)
T TIGR02868 302 AAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPG--SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLM 379 (529)
T ss_pred HHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCC--CCceeecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999997665421111 0 01112246999999999974 357999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCceee------------cCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCC
Q 000774 332 AMLGELPPVSDASAVI------------RGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPG 398 (1293)
Q Consensus 332 ~l~g~~~~~~g~~~~~------------~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~ 398 (1293)
+|+|+++|++|. +.+ |+.|+||||+|++|++||+|||.+|.+ .++++++++++.+++++++..+|+
T Consensus 380 lL~g~~~p~~G~-I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~ 458 (529)
T TIGR02868 380 LLTGLLDPLQGE-VTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPD 458 (529)
T ss_pred HHhcCCCCCCcE-EEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcc
Confidence 999999999994 333 358999999999999999999999865 688999999999999999999999
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCc
Q 000774 399 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 470 (1293)
Q Consensus 399 g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~ 470 (1293)
|++|.+||+|.+||||||||++|||||+++|+|||||||||+||+++++.+.+.+. ...+++|+|+||||+
T Consensus 459 GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~-~~~~~~TvIiItHrl 529 (529)
T TIGR02868 459 GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLL-AALSGKTVVVITHHL 529 (529)
T ss_pred cccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999988765 455789999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-63 Score=617.63 Aligned_cols=527 Identities=18% Similarity=0.219 Sum_probs=406.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 588 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGP--LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 665 (1293)
Q Consensus 588 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 665 (1293)
++..+++.++...+.+..|+.+...+|......... ..+..++.++.++..++.+++.++....+.+...++|.++++
T Consensus 8 ~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 87 (544)
T TIGR01842 8 FIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFA 87 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777778888877776543211111 123334444555667778888899999999999999999999
Q ss_pred HHHcCCccccccccchhHHHHHhcchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 666 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAV-FVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 744 (1293)
Q Consensus 666 ~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 744 (1293)
++++.|+. ..+...+++++|++.++..+.. ....++..++.++ .++++++++|++.++++..+++.+.+..++
T Consensus 88 ~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~ 161 (544)
T TIGR01842 88 ASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLN 161 (544)
T ss_pred HHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999984 2366789999999999987765 3444444444333 335566777766554443333333333333
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 000774 745 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL---M 821 (1293)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 821 (1293)
.+..++..+......+...+.+.|.++|+++||+|+.++.+.+++.+..++..+.................++..+ +
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (544)
T TIGR01842 162 NRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSL 241 (544)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433444444555667788899999999999999999999988888877776655544433333333322222222 1
Q ss_pred HHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCC
Q 000774 822 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 901 (1293)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~ 901 (1293)
++..+.+ .+..+..+ .+.+..++.+...+..++..+......++....+.+|+.++++.+++.... .+.
T Consensus 242 ~~~~g~~-l~~~g~it-----~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~- 310 (544)
T TIGR01842 242 VLGLGAY-LAIDGEIT-----PGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPL- 310 (544)
T ss_pred HHHHHHH-HHHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CCC-
Confidence 1222222 23344444 445555666777788888999999999999999999999998765543210 111
Q ss_pred CCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH
Q 000774 902 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 981 (1293)
Q Consensus 902 ~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 981 (1293)
.+..+.++++||+|+|+++.+++|+|+||+++|||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...
T Consensus 311 -~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 311 -PEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389 (544)
T ss_pred -CCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH
Confidence 1123569999999999754457999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhceEEccccccccccHhhhcCCCCC-CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 982 LRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 982 ~r~~i~~v~Q~~~lf~~ti~~nl~~~~~-~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
+|+.++||||+|.+|++|++||+..+++ .++++++++++.++++++++++|+|++|.+++.|.+|||||||||+||||+
T Consensus 390 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARal 469 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL 469 (544)
T ss_pred HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999986544 688999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhh
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
+++|++|||||||++||+++++.+.+.|++.. +++|+|+||||++.+..||+|++|++|++++.|+|+|+++
T Consensus 470 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 470 YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred hcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999999875 5799999999999988899999999999999999999975
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-63 Score=616.85 Aligned_cols=478 Identities=22% Similarity=0.280 Sum_probs=394.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHHHH--HHH
Q 000774 13 YAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQA--LHT 90 (1293)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~~~--l~~ 90 (1293)
++++++++.++..++.....+...+.+.++...+|..+|+|++++|.. ..+...+++++|++.+++++.. +..
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~ 122 (544)
T TIGR01842 48 LTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFA 122 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 344455556666777777777788899999999999999999999873 2356788899999999986643 334
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHH
Q 000774 91 LWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENS 170 (1293)
Q Consensus 91 ~~~~~~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~ 170 (1293)
++..++.++ .+++++...|+++++.++.+++++.+..+..++.++..++.++..+++.+.+.|.++|+++||.|++|+.
T Consensus 123 ~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~ 201 (544)
T TIGR01842 123 FFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGN 201 (544)
T ss_pred HHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHH
Confidence 444444433 3455667777777776666666666666677777888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 171 FQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV--LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMI 248 (1293)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~ 248 (1293)
+.+++++..++..+...+..........+...+.. .+.++++|++.+..|.+|+|.+++++.++..+..|+..+...+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~ 281 (544)
T TIGR01842 202 LTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGW 281 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887776665555444444333333222 2345567888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHH
Q 000774 249 TQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS 328 (1293)
Q Consensus 249 ~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKST 328 (1293)
..+.++..+++|+.++++.+++.....+ .+.....++++|++|+|++ .++++|+|+||++++||+++|+|||||||||
T Consensus 282 ~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~i~~~~v~~~y~~-~~~~~l~~~~~~i~~G~~~~ivG~sGsGKST 359 (544)
T TIGR01842 282 KQFSGARQAYKRLNELLANYPSRDPAMP-LPEPEGHLSVENVTIVPPG-GKKPTLRGISFRLQAGEALAIIGPSGSGKST 359 (544)
T ss_pred HHHHHHHHHHHHHHHHHhCCccccCCCC-CCCCCCeEEEEEEEEEcCC-CCccccccceEEEcCCCEEEEECCCCCCHHH
Confidence 9999999999999999976554321111 1122346999999999974 3468999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCcee------------ecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhc
Q 000774 329 LISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDL 395 (1293)
Q Consensus 329 Ll~~l~g~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~ 395 (1293)
|+++|+|+++|++|.... +++.++||||+|++|++|++|||.++.+ .++++++++++.++++++++.
T Consensus 360 L~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~ 439 (544)
T TIGR01842 360 LARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILR 439 (544)
T ss_pred HHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHh
Confidence 999999999999984321 2457999999999999999999987654 678899999999999999999
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh
Q 000774 396 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ 475 (1293)
Q Consensus 396 l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~ 475 (1293)
+|+|++|.+|++|.+||||||||++||||++++|++||||||||+||+++++.+.+.+.+...+++|+|+||||++.++.
T Consensus 440 l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~ 519 (544)
T TIGR01842 440 LPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGC 519 (544)
T ss_pred CccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988665443468999999999999999
Q ss_pred CCeEEEEeCCeEEEecChHHHhh
Q 000774 476 VDRIILVHEGMVKEEGTFEDLSN 498 (1293)
Q Consensus 476 ~d~i~~l~~G~i~~~g~~~~l~~ 498 (1293)
||+|++|++|++++.|+|+++.+
T Consensus 520 ~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 520 VDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999998864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-65 Score=558.81 Aligned_cols=457 Identities=27% Similarity=0.438 Sum_probs=350.1
Q ss_pred CcEEEEeeEEEcCC-CCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----CCCce-----------
Q 000774 283 PAISIRNGYFSWDS-KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASA----------- 345 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~-~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~-----~g~~~----------- 345 (1293)
+.++++|++..|.. +....++++|||+|++||.+||||+||||||-..+.++|+++.. +|...
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 46899999988853 23467999999999999999999999999999999999999641 12110
Q ss_pred ----eec-CcEEEEcCCccc-cC--ccHH----HHHccCCCCC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCC
Q 000774 346 ----VIR-GTVAYVPQVSWI-FN--ATVR----DNILFGSAFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 409 (1293)
Q Consensus 346 ----~~~-~~i~~v~Q~~~l-~~--~Tv~----eni~~g~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~ 409 (1293)
.+| ++|++++|+|.- .| -||. |-|......+ .++..+.++.+++.+--.. +....+
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~r--------l~~yPH 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKR--------LDAYPH 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhh--------hhhCCc
Confidence 122 369999999953 22 2544 4444433322 3456667777777543221 223446
Q ss_pred CCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhhh-CCeEEEEeCCeE
Q 000774 410 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 487 (1293)
Q Consensus 410 ~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i 487 (1293)
+|||||||||.||.||+.+|++||-||||.+||.....+|.+.+.... ..|-.+++||||+..++. ||||+||.+|++
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEE
Confidence 999999999999999999999999999999999999999998655433 348999999999999986 799999999999
Q ss_pred EEecChHHHhhccHH-HHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccccccchhhhhhh
Q 000774 488 KEEGTFEDLSNNGEL-FQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERE 566 (1293)
Q Consensus 488 ~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (1293)
+++|+.+++...... |.++.-+
T Consensus 237 vE~~~t~~lF~~PqHpYTr~Ll~--------------------------------------------------------- 259 (534)
T COG4172 237 VETGTTETLFAAPQHPYTRKLLA--------------------------------------------------------- 259 (534)
T ss_pred eecCcHHHHhhCCCChHHHHHHh---------------------------------------------------------
Confidence 999988776543100 0000000
Q ss_pred cCcccHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 000774 567 TGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSY 646 (1293)
Q Consensus 567 ~g~~~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 646 (1293)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 647 WLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS 726 (1293)
Q Consensus 647 ~~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1293)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 727 LWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGA 806 (1293)
Q Consensus 727 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1293)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 000774 807 NRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL 886 (1293)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~ 886 (1293)
..
T Consensus 260 ------------------------------------------------------------------------------ae 261 (534)
T COG4172 260 ------------------------------------------------------------------------------AE 261 (534)
T ss_pred ------------------------------------------------------------------------------cC
Confidence 00
Q ss_pred CCCCccccCCCCCCCCCCCCccEEEEEEEEEecCC---------CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHh
Q 000774 887 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 957 (1293)
Q Consensus 887 ~~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~---------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~ 957 (1293)
|...+ ++........++.+||.+.|+-+ ...++++|||++++||.+||||.||||||||-.+|+
T Consensus 262 P~g~~-------~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~all 334 (534)
T COG4172 262 PSGDP-------PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALL 334 (534)
T ss_pred CCCCC-------CCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHH
Confidence 11000 00000112247888888888421 124899999999999999999999999999999999
Q ss_pred cCCCCCcceEEECCeecCCCChHH---HhhhceEEccccc--ccc-ccHhhhcC----CCC-CC----CHHHHHHHHHHh
Q 000774 958 RIVELERGRILIDGFDIAKFGLMD---LRKILGIIPQSPV--LFS-GTVRFNLD----PFS-EH----SDADLWEALERA 1022 (1293)
Q Consensus 958 g~~~p~~G~I~i~g~~i~~~~~~~---~r~~i~~v~Q~~~--lf~-~ti~~nl~----~~~-~~----~~~~~~~~l~~~ 1022 (1293)
|+++++ |+|.++|.++...+.+. +|+++-+|+|||+ |-. .||.+-+. ... .. .++.+.+|++.+
T Consensus 335 rL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EV 413 (534)
T COG4172 335 RLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEV 413 (534)
T ss_pred hhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHc
Confidence 999886 99999999999888766 5889999999996 332 37766442 111 12 245577777777
Q ss_pred hHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEE
Q 000774 1023 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLII 1100 (1293)
Q Consensus 1023 ~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~v 1100 (1293)
|++.-. .+..++.+|||||||++||||++-+|++++||||||+||..-...|.+.|+++- .+-+-++|
T Consensus 414 GLDp~~----------r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFI 483 (534)
T COG4172 414 GLDPAT----------RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFI 483 (534)
T ss_pred CCChhH----------hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 665422 244567899999999999999999999999999999999999999999998864 46899999
Q ss_pred ecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCCChHHH
Q 000774 1101 AHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140 (1293)
Q Consensus 1101 tH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 1140 (1293)
|||+..++. ||+|+||.+|+|||+|..+++++++...|.+
T Consensus 484 SHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 484 SHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred eccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHH
Confidence 999999988 9999999999999999999999887766664
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-63 Score=614.21 Aligned_cols=468 Identities=22% Similarity=0.283 Sum_probs=386.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHHH-HHHHH
Q 000774 13 YAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTL 91 (1293)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~~-~l~~~ 91 (1293)
+++.+++..++..++.+...+...+++.++...+|..+|+|++++|..++++.++|++++++++|++.+++++. .+..+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~ 125 (529)
T TIGR02857 46 ALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQL 125 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33344455566667777777788889999999999999999999999999999999999999999999998653 45666
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 000774 92 WSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSF 171 (1293)
Q Consensus 92 ~~~~~~~i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~ 171 (1293)
+..++.+++++++++...++++++.++.+++...+..++.++.++..++.++..++..+.+.|.++|+++||.|++|+.+
T Consensus 126 ~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~ 205 (529)
T TIGR02857 126 VLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQ 205 (529)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHH
Confidence 66666666667777777777777766666655555666777788888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 172 QSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLV--TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMIT 249 (1293)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~ 249 (1293)
.+++++..++..+...+..+.......+...+..+. .++.++++.+..|.+++|.+++++.+...+..|+..+...+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~ 285 (529)
T TIGR02857 206 AAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYH 285 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988777766655544444444333333322221 222345556668899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHH
Q 000774 250 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL 329 (1293)
Q Consensus 250 ~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTL 329 (1293)
.+.++..+++|+.++++.+++.....+........|+++||+|+|++ .++++|+|+||+|++||+++|+||||||||||
T Consensus 286 ~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~-~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL 364 (529)
T TIGR02857 286 ARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAYPG-RRAPALRPVSFTVPPGERVALVGPSGAGKSTL 364 (529)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEECCC-CCcccccceeEEECCCCEEEEECCCCCCHHHH
Confidence 99999999999999997543321111111112246999999999974 24589999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCce------------eecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcC
Q 000774 330 ISAMLGELPPVSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLL 396 (1293)
Q Consensus 330 l~~l~g~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l 396 (1293)
+++|+|+++|++|... .+++.|+||+|+|++|++||+|||.++.+ .++++++++++.+++.++++.+
T Consensus 365 ~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~l 444 (529)
T TIGR02857 365 LNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAAL 444 (529)
T ss_pred HHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhC
Confidence 9999999999998432 13457999999999999999999999864 5778999999999999999999
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhC
Q 000774 397 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV 476 (1293)
Q Consensus 397 ~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~ 476 (1293)
|+|++|.+||+|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+ ..+++|+|+||||++.++.|
T Consensus 445 p~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~ 523 (529)
T TIGR02857 445 PQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRA-LAQGRTVLLVTHRLALAERA 523 (529)
T ss_pred cccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH-hcCCCEEEEEecCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999886654 45789999999999999999
Q ss_pred CeEEEE
Q 000774 477 DRIILV 482 (1293)
Q Consensus 477 d~i~~l 482 (1293)
|+|++|
T Consensus 524 d~i~~l 529 (529)
T TIGR02857 524 DRIVVL 529 (529)
T ss_pred CEEEeC
Confidence 999975
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-63 Score=565.59 Aligned_cols=488 Identities=24% Similarity=0.323 Sum_probs=390.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000774 19 VGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFR 97 (1293)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~~~~~~ 97 (1293)
++.+...++..........+..++-......+|++.+.++.+++.+..+|++.+.+..-...+..+. ..+..+++..+.
T Consensus 82 iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~ 161 (591)
T KOG0057|consen 82 IARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFE 161 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455554444444456677777788889999999999999999999999999999999999876 345666666677
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Q 000774 98 IIISLVLLYNELGVASLLGALLLVFMFP-VQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQ 176 (1293)
Q Consensus 98 ~i~~~~~l~~~~~~~~l~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~ 176 (1293)
+.+....+++..|....+..++.+..+. +...+...-.+..++.+++.+.......|.+.+.++||.||-|+...+++.
T Consensus 162 i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~ 241 (591)
T KOG0057|consen 162 IALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYD 241 (591)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 7777778888888765444444444433 333444455567778888888999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 177 NVRNDELSWFRKAQFLAACNSFILNSIP--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNA 254 (1293)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~ 254 (1293)
..-.+.-+...+.....++..+....+. ..+.++..+..-+..+.+|.+.++...+++..+..|+..++..+..+.++
T Consensus 242 ~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~ 321 (591)
T KOG0057|consen 242 GSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQA 321 (591)
T ss_pred HHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 6655554444433333333333322221 12223334444456788999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHh
Q 000774 255 NVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML 334 (1293)
Q Consensus 255 ~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~ 334 (1293)
..-+.-+....+..........+.......|+|+||+|+|++ ++++|+++||+|++||++||||+|||||||++++|.
T Consensus 322 l~Dm~~~~~l~~~~~~i~~~~~~i~~~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Ll 399 (591)
T KOG0057|consen 322 LTDMRTLFILLEVDEDIQEAALPIELFGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLL 399 (591)
T ss_pred HHhHHHHHhhhhhhhhhhhccCCcccCCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 887776655443322221111112222345999999999974 578999999999999999999999999999999999
Q ss_pred cCCCCCCCCce------------eecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCCCc
Q 000774 335 GELPPVSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDV 401 (1293)
Q Consensus 335 g~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~ 401 (1293)
++++ ++|.+. .+|+.||||||+..||++||.+||.+|++ .+++++.++++.+++++.+..+|+||+
T Consensus 400 rF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~ 478 (591)
T KOG0057|consen 400 RFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQ 478 (591)
T ss_pred HHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccch
Confidence 9999 788432 25677999999999999999999999986 578899999999999999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEE
Q 000774 402 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIIL 481 (1293)
Q Consensus 402 t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~ 481 (1293)
|.+||+|..|||||||||+||||+++||+|++||||||+||.+|++.+++.+.+ ...+||+|+|.||++.++.+|+|++
T Consensus 479 T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~ 557 (591)
T KOG0057|consen 479 TLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIV 557 (591)
T ss_pred hhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEE
Confidence 999999999999999999999999999999999999999999999999997766 6689999999999999999999999
Q ss_pred EeCCeEEEecChHHHhhccHHHHHHHHHh
Q 000774 482 VHEGMVKEEGTFEDLSNNGELFQKLMENA 510 (1293)
Q Consensus 482 l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 510 (1293)
+++|++.+.|+|+||+...+.|.++|..+
T Consensus 558 l~nG~v~e~gth~ell~~s~~~~~~w~~~ 586 (591)
T KOG0057|consen 558 LDNGTVKEYGTHSELLAPSELYADLWTTQ 586 (591)
T ss_pred EECCeeEEeccHHHHhhhhhHHHHHhccc
Confidence 99999999999999999888899888653
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-63 Score=668.27 Aligned_cols=475 Identities=19% Similarity=0.269 Sum_probs=388.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 000774 32 FQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRIIISLVLLYNELG 110 (1293)
Q Consensus 32 ~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~~~~~~~i~~~~~l~~~~~ 110 (1293)
.+.....+.+....++..+|+++++.|..++++.++|+++||+++|++.++..+ ..+..++..++.++++++++++..+
T Consensus 1026 ~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~ 1105 (1522)
T TIGR00957 1026 SMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATP 1105 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456778888899999999999999999999999999999999999999865 4556666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 000774 111 VASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQ 190 (1293)
Q Consensus 111 ~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~~~~~~~~~~~~~~ 190 (1293)
+.+++.++++++++.+..++.+..+...+......+...+.+.|.++|+++||+|++++.+.++..+..+...+......
T Consensus 1106 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~ 1185 (1522)
T TIGR00957 1106 IAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSI 1185 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444444444455555566666666666777888999999999999999999999998888877776666544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000774 191 FLAACNSFILNSIPVLVTVVSFGMFTLL-GGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEE 269 (1293)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~ 269 (1293)
....+.......+..++ ++..+.+.+. .+.+++|.+.+++.+...+..|+..+...+..+..+.+|++||.++++.++
T Consensus 1186 ~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~ 1264 (1522)
T TIGR00957 1186 VANRWLAVRLECVGNCI-VLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEK 1264 (1522)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33444433333332222 2223333333 578999999999999999999999999999999999999999999997665
Q ss_pred cccC--CC--CCC-CCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCc
Q 000774 270 KILL--PN--PPL-TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 344 (1293)
Q Consensus 270 ~~~~--~~--~~~-~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~ 344 (1293)
+... .. ++. -+....|+|+||+|+|+++ .+++|+||||+|++||++||||+||||||||+++|.|+++|++|..
T Consensus 1265 e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I 1343 (1522)
T TIGR00957 1265 EAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEI 1343 (1522)
T ss_pred CccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeE
Confidence 4321 11 111 0223569999999999743 3579999999999999999999999999999999999999999843
Q ss_pred e------------eecCcEEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCC
Q 000774 345 A------------VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 412 (1293)
Q Consensus 345 ~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LS 412 (1293)
. .+|++|+||||+|.+|+|||||||....+.++++++++++.|++.+++..+|+|++|.+||+|.+||
T Consensus 1344 ~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LS 1423 (1522)
T TIGR00957 1344 IIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLS 1423 (1522)
T ss_pred EECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCC
Confidence 2 1466899999999999999999998434688899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEecC
Q 000774 413 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 492 (1293)
Q Consensus 413 GGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~ 492 (1293)
||||||++|||||+++|+|||||||||+||+++++.|.+.+ +...+++|+|+||||++.+..+|||+||++|+|++.|+
T Consensus 1424 gGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l-~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~ 1502 (1522)
T TIGR00957 1424 VGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTI-RTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGA 1502 (1522)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH-HHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999998887654 55567899999999999999999999999999999999
Q ss_pred hHHHhhccHHHHHHHHH
Q 000774 493 FEDLSNNGELFQKLMEN 509 (1293)
Q Consensus 493 ~~~l~~~~~~~~~~~~~ 509 (1293)
|++|+++++.|+++++.
T Consensus 1503 ~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1503 PSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred HHHHHhCCCHHHHHHHH
Confidence 99999988999998875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-63 Score=665.92 Aligned_cols=211 Identities=26% Similarity=0.402 Sum_probs=175.3
Q ss_pred cEEEEEEEEEec--CCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC---CCcceEEECCeecCCCChHHH
Q 000774 908 SIKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDL 982 (1293)
Q Consensus 908 ~i~~~~v~~~y~--~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 982 (1293)
.++++||+++|+ ++.+++|+|||+++++||++||+||||||||||+++|+|+.+ |++|+|.+||.++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 479999999995 223469999999999999999999999999999999999998 78899999999984 247
Q ss_pred hhhceEEccccccc-cccHhhhcCCCC------CCCHHH----HHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHH
Q 000774 983 RKILGIIPQSPVLF-SGTVRFNLDPFS------EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1051 (1293)
Q Consensus 983 r~~i~~v~Q~~~lf-~~ti~~nl~~~~------~~~~~~----~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqk 1051 (1293)
|+.+|||||++.++ ..||+|||.+.. ..++++ +.++++..++.+ -.|+.+++.+..||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 88999999998655 569999997421 122222 334444443322 246667766778999999
Q ss_pred HHHHHHHHhccCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchh--hccCEEEEEeCC-eEeeecC
Q 000774 1052 QLLSLSRALLRRSK-ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTI--IDCDRILLLDSG-RVLEYDT 1126 (1293)
Q Consensus 1052 qrl~lArall~~p~-iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~--~~~d~i~vl~~G-~i~~~g~ 1126 (1293)
||++|||||+.+|+ ||+|||||+|||+.+...+++.|+++. +++|||+++|+++.. ..||++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999974 579999999999973 459999999987 9999998
Q ss_pred hhh
Q 000774 1127 PEE 1129 (1293)
Q Consensus 1127 ~~e 1129 (1293)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 743
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-63 Score=619.17 Aligned_cols=200 Identities=19% Similarity=0.285 Sum_probs=161.6
Q ss_pred ccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhc
Q 000774 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 986 (1293)
Q Consensus 907 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 986 (1293)
..++++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 359999999999643 3589999999999999999999999999999999999999999999875 2469
Q ss_pred eEEccccccccccHhhhcC-----CCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 000774 987 GIIPQSPVLFSGTVRFNLD-----PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 1061 (1293)
Q Consensus 987 ~~v~Q~~~lf~~ti~~nl~-----~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 1061 (1293)
||+||++. ...++.+|.. .+....++++.++++..++.+ ......+..|||||||||+||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~----------~~~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCCh----------HHhcCCccccCHHHHHHHHHHHHHh
Confidence 99999873 2223444321 111223444555555444321 1234556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEe-eecChhhhh
Q 000774 1062 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELL 1131 (1293)
Q Consensus 1062 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~-~~g~~~el~ 1131 (1293)
.+|++|||||||++||+.+.+.+.+.|.+. ++|||+||||++++.. |||+++|++|+++ ..|+++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999999999999999999999874 4699999999999987 9999999999998 568887764
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-61 Score=598.09 Aligned_cols=522 Identities=16% Similarity=0.124 Sum_probs=388.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 586 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 665 (1293)
Q Consensus 586 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 665 (1293)
+.+++.+++.++...+....+.++..+.+....... .....+.++.++..++.++..++....+.+...++|.++++
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~ 94 (555)
T TIGR01194 18 AITAFSIALGLAGGLAIIALLASINNAIHEENFLGQ---GSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCE 94 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555666666677777776653211111 11222444555667788888899999999999999999999
Q ss_pred HHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 666 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 745 (1293)
Q Consensus 666 ~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 745 (1293)
++++.|+.+|+++++|++++|+++|++.++..+.. +..++..++.++..++++++++|.+.++++.++++.+.+..++.
T Consensus 95 ~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~ 173 (555)
T TIGR01194 95 KILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAF 173 (555)
T ss_pred HHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998754 55666666677777778888888877765554444444444343
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 746 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD--RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW 823 (1293)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1293)
+..++..+......+.+.+.+.|.+.|++++|+|+.++ ...+.+.+..+...+.................++..+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (555)
T TIGR01194 174 MGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIG 253 (555)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444556778899999999999999999843 3445555555544444332222211111111221111111
Q ss_pred HHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc---cCCCCC-
Q 000774 824 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLV---IESNRP- 899 (1293)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~---~~~~~~- 899 (1293)
+..++... .+..+ .+.+..++.+...+..++..+......++....+.+|+.++.+.+.+++.. .+....
T Consensus 254 ~~~~~~~~-~~~~t-----~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~ 327 (555)
T TIGR01194 254 CALFAAAM-FASID-----AAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVL 327 (555)
T ss_pred HHHHHHHH-hcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 11111111 12232 445556666777788899999999999999999999999997642221110 000000
Q ss_pred -CCCCCCCccEEEEEEEEEecCC---CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecC
Q 000774 900 -PPGWPSSGSIKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 975 (1293)
Q Consensus 900 -~~~~~~~g~i~~~~v~~~y~~~---~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~ 975 (1293)
.+.....+.|+++||+|+|+++ .+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.|+.
T Consensus 328 ~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~ 407 (555)
T TIGR01194 328 LLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVS 407 (555)
T ss_pred ccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 0001123569999999999753 236999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHhhhceEEccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 000774 976 KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1055 (1293)
Q Consensus 976 ~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 1055 (1293)
+++..++|++++||||++.+|++|+++|+. .+.++++++++++.++++++++.+|.|++|. .+|||||||||+
T Consensus 408 ~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRla 480 (555)
T TIGR01194 408 ADSRDDYRDLFSAIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLA 480 (555)
T ss_pred CCCHHHHHhhCcEEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHH
Confidence 999999999999999999999999999963 3457888999999999999999999999984 679999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-H-cCCcEEEEEecCcchhhccCEEEEEeCCeEeee
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-E-FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1124 (1293)
Q Consensus 1056 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~-~-~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 1124 (1293)
||||++++|+||||||||++||+++++.+++.+.+ . .+++|+|+||||++++..||+|++|++|++++.
T Consensus 481 laRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 481 LICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999887643 3 358999999999999989999999999999875
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=654.77 Aligned_cols=486 Identities=19% Similarity=0.236 Sum_probs=366.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 000774 24 GVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRIIISL 102 (1293)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~~~~~~~i~~~ 102 (1293)
..++.....+...+.+.+....++..+|+++++.|..++++.++|+++||+++|++.++..+ ..+..++...+.++.++
T Consensus 966 ~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~ 1045 (1622)
T PLN03130 966 QVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTF 1045 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444556788888899999999999999999999999999999999999999865 34455555555555555
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHH
Q 000774 103 VLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 182 (1293)
Q Consensus 103 ~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~~~~~~ 182 (1293)
+++....++..++.+.++++++.+..++.+..++..+......+...+.+.|.++|+++||+|++++.+.+...+..+..
T Consensus 1046 i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~ 1125 (1622)
T PLN03130 1046 VLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNN 1125 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 54444443332222222222233333444444555555556667788899999999999999999998887766655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 183 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGG-DLT-----PARAFTSLSLFAVLRFPLFMLPNMITQVVNANV 256 (1293)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~lt-----~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~ 256 (1293)
.+..........+......++..+++ +..+.+.+..+ ... ++.+-.++++...+..++..+...+..+..+.+
T Consensus 1126 ~~~~~~~~~~~~wl~~~l~~~~~~~i-~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~ 1204 (1622)
T PLN03130 1126 IRFTLVNMSSNRWLAIRLETLGGLMI-WLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLN 1204 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44332222222222222222222221 12222323322 111 233333344455555677777778888899999
Q ss_pred HHHHHHHHhhhhhcccC---CC-CCC-CCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHH
Q 000774 257 SLKRMEEFLLAEEKILL---PN-PPL-TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS 331 (1293)
Q Consensus 257 s~~Ri~~~l~~~~~~~~---~~-~~~-~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~ 331 (1293)
|++|+.++++.+++... .. ++. -+..+.|+|+||+|+|++ +.+++|+|+||+|++||++||||+||||||||++
T Consensus 1205 sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~-~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~ 1283 (1622)
T PLN03130 1205 AVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRP-ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLN 1283 (1622)
T ss_pred HHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCC-CCCceecceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999987654321 11 111 122346999999999964 3457999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCce------------eecCcEEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCC
Q 000774 332 AMLGELPPVSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGG 399 (1293)
Q Consensus 332 ~l~g~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g 399 (1293)
+|.|+++|++|... .+|++|+||||+|.||+|||||||..+.+.++++++++++.|+++++++.+|+|
T Consensus 1284 lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~G 1363 (1622)
T PLN03130 1284 ALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLG 1363 (1622)
T ss_pred HHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccc
Confidence 99999999998432 146789999999999999999999998888899999999999999999999999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeE
Q 000774 400 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 479 (1293)
Q Consensus 400 ~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i 479 (1293)
++|.+||+|.+||||||||++|||||+++|+|||||||||+||+++++.|.+.+ +...+++|+|+||||++.+..||||
T Consensus 1364 Ldt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I-~~~~~~~TvI~IAHRL~tI~~~DrI 1442 (1622)
T PLN03130 1364 LDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTI-REEFKSCTMLIIAHRLNTIIDCDRI 1442 (1622)
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH-HHHCCCCEEEEEeCChHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999999987655 4456789999999999999999999
Q ss_pred EEEeCCeEEEecChHHHhhc-cHHHHHHHHHhch
Q 000774 480 ILVHEGMVKEEGTFEDLSNN-GELFQKLMENAGK 512 (1293)
Q Consensus 480 ~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~ 512 (1293)
+||++|+|++.|+|++|+++ ++.|++++...+.
T Consensus 1443 lVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1443 LVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGA 1476 (1622)
T ss_pred EEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcCh
Confidence 99999999999999999987 6899999887654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-61 Score=652.52 Aligned_cols=479 Identities=17% Similarity=0.230 Sum_probs=365.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 000774 31 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNEL 109 (1293)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~~-~l~~~~~~~~~~i~~~~~l~~~~ 109 (1293)
..+...+.+.+....++..+|+++++.|..++++.++|+++||+++|++.++..+. .+..++..++.++.+++++....
T Consensus 970 ~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~ 1049 (1495)
T PLN03232 970 NSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVS 1049 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567888888999999999999999999999999999999999999998653 44445555555555555444443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 000774 110 GVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKA 189 (1293)
Q Consensus 110 ~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~~~~~~~~~~~~~ 189 (1293)
++..++.+.++++++.+..+..+..+...+......+...+.+.|.++|+++||+|++++.+.++..+..+...+.....
T Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (1495)
T PLN03232 1050 TISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLAN 1129 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222222222222223333444555666667788889999999999999999999988887766665554443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 190 QFLAACNSFILNSIPVLVTVVSFGMFTLL-GGDL----T-PARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEE 263 (1293)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~l----t-~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~ 263 (1293)
.....+.......+..+ +++..+.+.+. .+.+ . ++.+..++.+...+..|+..+...+..+..+..|++||.+
T Consensus 1130 ~~~~~wl~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e 1208 (1495)
T PLN03232 1130 TSSNRWLTIRLETLGGV-MIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGN 1208 (1495)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222111 11122223332 2322 1 2223335556666777899999999999999999999999
Q ss_pred HhhhhhcccC--CC--CCC-CCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 000774 264 FLLAEEKILL--PN--PPL-TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 264 ~l~~~~~~~~--~~--~~~-~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~ 338 (1293)
+++.+++... .. ++. .+....|+++||+|+|++ +.+++|+|+||+|++||++||||+||||||||+++|.|+++
T Consensus 1209 ~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~-~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~ 1287 (1495)
T PLN03232 1209 YIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRP-GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE 1287 (1495)
T ss_pred HhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECC-CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 9986654321 11 111 122346999999999964 34689999999999999999999999999999999999999
Q ss_pred CCCCCce------------eecCcEEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCCCcccccC
Q 000774 339 PVSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 406 (1293)
Q Consensus 339 ~~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~ 406 (1293)
|++|... .+|++|+||||+|.+|++||||||.++.+.++++++++++.+++.++++.+|+|++|.+||
T Consensus 1288 p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e 1367 (1495)
T PLN03232 1288 LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSE 1367 (1495)
T ss_pred CCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecC
Confidence 9998432 1466899999999999999999999988888999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCe
Q 000774 407 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGM 486 (1293)
Q Consensus 407 ~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~ 486 (1293)
+|.+||||||||++|||||+++|+|||||||||+||+++++.|.+.+ +...+++|+|+||||++.+..||+|++|++|+
T Consensus 1368 ~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L-~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1446 (1495)
T PLN03232 1368 GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTI-REEFKSCTMLVIAHRLNTIIDCDKILVLSSGQ 1446 (1495)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH-HHHcCCCEEEEEeCCHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999987655 44567899999999999999999999999999
Q ss_pred EEEecChHHHhhcc-HHHHHHHHHhch
Q 000774 487 VKEEGTFEDLSNNG-ELFQKLMENAGK 512 (1293)
Q Consensus 487 i~~~g~~~~l~~~~-~~~~~~~~~~~~ 512 (1293)
|++.|+|+||++++ +.|+++++.++.
T Consensus 1447 ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1447 VLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred EEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 99999999999886 589999876553
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-63 Score=545.34 Aligned_cols=488 Identities=25% Similarity=0.380 Sum_probs=389.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000774 646 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTF-VLIGIVST 724 (1293)
Q Consensus 646 ~~~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 724 (1293)
.++...+..+.+.+-.+.|.|+.++++.|+-+..+|.+..-+......++..+...+...+..++-+.... ++....+|
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 34556667777788888999999999999998877765544444444444433344444444444333332 33334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 725 MSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNM 804 (1293)
Q Consensus 725 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1293)
+...+.+..++++.++.......+...++....+.+..++.-.+++-+.+++|.|+.|+++..++.+..+.+.+......
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 66655555555554444433333444555555666677788889999999999999999999999999999998888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000774 805 GANRWLAIRLEIVGGLMIWLTATF--AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGN 882 (1293)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~ 882 (1293)
.+-.|+.+....+........... .-+..+..+ .+.+...-.+..++..+++.+......+.+.....++..+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~T-----vgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfd 238 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLT-----VGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFD 238 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCC-----chhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHH
Confidence 776776665544433222221111 112333333 4455566677888888888888888899999999999988
Q ss_pred hhcCCCCCccccCCCCCCCCCC-CCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC
Q 000774 883 YIELPSEAPLVIESNRPPPGWP-SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 883 ~~~~~~e~~~~~~~~~~~~~~~-~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
+.+.+.+... ....++.|| ..|.+.|+||+|.|.+. .++|+++||++++|+++||||++|+||||++++|.|+|+
T Consensus 239 Ll~~~~~v~d---~pda~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD 314 (497)
T COG5265 239 LLDVEAEVSD---APDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD 314 (497)
T ss_pred hhccchhhcc---CCCCccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC
Confidence 8876654321 222233442 35679999999999876 479999999999999999999999999999999999999
Q ss_pred CCcceEEECCeecCCCChHHHhhhceEEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhh
Q 000774 962 LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVS 1040 (1293)
Q Consensus 962 p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~ 1040 (1293)
+++|.|.+||+|+.....+.+|+.||+||||..||+.|+..|+.+.+ ..+++|++.+++.++++++++.+|+|+++.++
T Consensus 315 ~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vg 394 (497)
T COG5265 315 VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG 394 (497)
T ss_pred CcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccc
Confidence 99999999999999999999999999999999999999999998765 46899999999999999999999999999999
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCe
Q 000774 1041 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGR 1120 (1293)
Q Consensus 1041 ~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~ 1120 (1293)
|+|-.||||||||+++||++|++|+||+|||+||+||..||+.|+..|++...++|.++|+||++++.+||.|+||++|+
T Consensus 395 erglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~ 474 (497)
T COG5265 395 ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGR 474 (497)
T ss_pred hheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecChhhhhhcCCChHHHHHH
Q 000774 1121 VLEYDTPEELLSNEGSSFSKMVQ 1143 (1293)
Q Consensus 1121 i~~~g~~~el~~~~~~~~~~l~~ 1143 (1293)
|+|.|+|+||+.+ +|.|..|+.
T Consensus 475 i~erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 475 IVERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred EEecCcHHHHHHc-CChHHHHhc
Confidence 9999999999986 788998874
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-64 Score=557.82 Aligned_cols=471 Identities=20% Similarity=0.311 Sum_probs=373.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHhHH
Q 000774 35 VMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVL-LYNELGVA 112 (1293)
Q Consensus 35 ~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~~-~l~~~~~~~~~~i~~~~~-l~~~~~~~ 112 (1293)
..++....-.++-..+|+|+.+++..++-++++|+++..++...+.+. +.. .+..+....+-+.++++. .+...+|.
T Consensus 283 Wi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wF 361 (790)
T KOG0056|consen 283 WIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWF 361 (790)
T ss_pred EEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHH
Confidence 334555555678888999999999999999999999998887766665 222 122333333334344432 23344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH--
Q 000774 113 SLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQ-- 190 (1293)
Q Consensus 113 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~~~~~~~~~~~~~~-- 190 (1293)
.++.++.+.++..+...+...-.++++++..+-.+....-.+.+-+.+++|.|+.|+...+++.+...++.+..+|..
T Consensus 362 gLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~s 441 (790)
T KOG0056|consen 362 GLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLAS 441 (790)
T ss_pred HHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444444333333344455666666666666667779999999999999998877777666555555444432
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000774 191 --FLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAE 268 (1293)
Q Consensus 191 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~ 268 (1293)
+++.....++.. .++..-.+.+|.+..+.+++|..+.+..++..+.+|++.++..+..++++.+-++++.++++++
T Consensus 442 LnfLN~~Qn~Ii~l--gll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee 519 (790)
T KOG0056|consen 442 LNFLNIVQNGIIGL--GLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEE 519 (790)
T ss_pred HHHHHHHhhhhhhh--HHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcC
Confidence 222222222211 1122223455667788999999999999999999999999999999999999999999999887
Q ss_pred hccc-CCC-CCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCce-
Q 000774 269 EKIL-LPN-PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA- 345 (1293)
Q Consensus 269 ~~~~-~~~-~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~- 345 (1293)
++.. .|+ ++.....+.|+|+||+|.|++ ++|+|+||||+++||+.+|+|||||+||||++++|.++++..+|...
T Consensus 520 ~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~i 597 (790)
T KOG0056|consen 520 PEVVDLPGAPPLKVTQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITI 597 (790)
T ss_pred chhhcCCCCCCccccCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEE
Confidence 7642 122 233334567999999999974 68999999999999999999999999999999999999999998432
Q ss_pred -----------eecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCCh
Q 000774 346 -----------VIRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 413 (1293)
Q Consensus 346 -----------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 413 (1293)
.+|+.||+||||..|||+||..||.++++ ..++++.++.+++++++.+-.+|+||.|.+||+|-.|||
T Consensus 598 DgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSG 677 (790)
T KOG0056|consen 598 DGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSG 677 (790)
T ss_pred cCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCC
Confidence 14668999999999999999999999986 567889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEecCh
Q 000774 414 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 493 (1293)
Q Consensus 414 GqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~ 493 (1293)
|+|||||+||+++++|.+++|||+||+||..+++.|. .++.+...++|.|+|+||++++-+||.|+++++|+|++.|+|
T Consensus 678 GEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQ-aaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~H 756 (790)
T KOG0056|consen 678 GEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQ-AALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRH 756 (790)
T ss_pred cchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHH-HHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcH
Confidence 9999999999999999999999999999999999995 567778899999999999999999999999999999999999
Q ss_pred HHHhhc-cHHHHHHHHHhc
Q 000774 494 EDLSNN-GELFQKLMENAG 511 (1293)
Q Consensus 494 ~~l~~~-~~~~~~~~~~~~ 511 (1293)
+||.++ +|.|++||+.+.
T Consensus 757 eeLl~rdgG~Ya~MWq~qq 775 (790)
T KOG0056|consen 757 EELLKRDGGAYADMWQAQQ 775 (790)
T ss_pred HHHHhccCCcHHHHHHHHH
Confidence 999988 889999997654
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-60 Score=646.21 Aligned_cols=472 Identities=19% Similarity=0.204 Sum_probs=373.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000774 38 VGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRIIISLVLLYNELGVASLLG 116 (1293)
Q Consensus 38 ~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~~~~~~~i~~~~~l~~~~~~~~l~~ 116 (1293)
.+.+....++..+|+++++.|..++++.++|+++||+++|++.++..+ ..+..++..++.++++++++++..++..++.
T Consensus 1025 ~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~ 1104 (1560)
T PTZ00243 1025 AMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVAL 1104 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445678899999999999999999999999999999999999865 3455566666666666666665555443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 117 ALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACN 196 (1293)
Q Consensus 117 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1293)
+.++++++.+..++.+..+...+......+...+.+.|.++|+++||+|++++.+.+++.+..+...+..........+.
T Consensus 1105 i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~ 1184 (1560)
T PTZ00243 1105 VPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWL 1184 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332333344445555566666666777888999999999999999999999999888777776665544433333333
Q ss_pred HHHHHHHHHHH--HHHHHHHH--HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 000774 197 SFILNSIPVLV--TVVSFGMF--TLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL 272 (1293)
Q Consensus 197 ~~~~~~~~~~v--~~~~~~~~--~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~ 272 (1293)
.....++..++ .++.++++ ....+.+++|.+..++.+...+..|+..+...+..+..+..|++||.++++..+++.
T Consensus 1185 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~ 1264 (1560)
T PTZ00243 1185 GVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHED 1264 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 33333222211 11122222 223345788988888888888999999999999999999999999999986322110
Q ss_pred -C--------------------------C-CCC----CCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEc
Q 000774 273 -L--------------------------P-NPP----LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVG 320 (1293)
Q Consensus 273 -~--------------------------~-~~~----~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG 320 (1293)
. + .++ ..+....|+|+||+|+|++ +.+++|+||||+|++||++||||
T Consensus 1265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~-~~~~vL~~vsf~I~~GekVaIVG 1343 (1560)
T PTZ00243 1265 MPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYRE-GLPLVLRGVSFRIAPREKVGIVG 1343 (1560)
T ss_pred cccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCC-CCCceeecceEEECCCCEEEEEC
Confidence 0 0 000 0111246999999999974 34569999999999999999999
Q ss_pred CCCCcHHHHHHHHhcCCCCCCCCce------------eecCcEEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcC
Q 000774 321 GTGEGKTSLISAMLGELPPVSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS 388 (1293)
Q Consensus 321 ~~GsGKSTLl~~l~g~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~ 388 (1293)
+||||||||+++|+|+++|++|.+. .+|+.|+||||+|.||++||+|||..+...++++++++++.|+
T Consensus 1344 rTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~ 1423 (1560)
T PTZ00243 1344 RTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVG 1423 (1560)
T ss_pred CCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCC
Confidence 9999999999999999999998432 1466899999999999999999998776788999999999999
Q ss_pred ChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcC-CCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 000774 389 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN-SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVT 467 (1293)
Q Consensus 389 l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~-~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vt 467 (1293)
+.+++..+|+|++|.+||+|.+|||||||||+|||||+++ |+|||||||||+||+++++.|.+.+ +...+++|+|+||
T Consensus 1424 l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L-~~~~~~~TvI~IA 1502 (1560)
T PTZ00243 1424 LRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATV-MSAFSAYTVITIA 1502 (1560)
T ss_pred ChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHH-HHHCCCCEEEEEe
Confidence 9999999999999999999999999999999999999995 8999999999999999999997655 4456789999999
Q ss_pred cCcchhhhCCeEEEEeCCeEEEecChHHHhhc-cHHHHHHHHHhc
Q 000774 468 NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKLMENAG 511 (1293)
Q Consensus 468 H~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 511 (1293)
||++.+..||+|++|++|+|++.|+|++|+++ ++.|++++...+
T Consensus 1503 HRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1503 HRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred ccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999999999999999999999999999975 788999987654
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-60 Score=536.26 Aligned_cols=478 Identities=23% Similarity=0.348 Sum_probs=392.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHHH--HHHH
Q 000774 13 YAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ--ALHT 90 (1293)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~~--~l~~ 90 (1293)
+.++....+++..++.....+...|++.++...|...+|....+.+.... ..|+=.+ .-+|.++++.|.. .+..
T Consensus 65 Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~---~~g~~~Q-~LrDL~qvR~Fltg~g~~A 140 (580)
T COG4618 65 LTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRR---GSGDGLQ-PLRDLDQVRQFLTGTGLTA 140 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhc---CCCcccc-chhhHHHHHHHHcCCCcch
Confidence 33444456667777788888888999999999999999999876554432 2332222 3479999998863 2334
Q ss_pred HHHHHHHH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcch
Q 000774 91 LWSAPFRI--IISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWE 168 (1293)
Q Consensus 91 ~~~~~~~~--i~~~~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e 168 (1293)
++..|+.. +..++++..++|+.++++.++++++..+.- +..++..++..+...+++.......++.++|+++|+.
T Consensus 141 ~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~---~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~ 217 (580)
T COG4618 141 FFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNE---RATRKPLKEASEASIRANQLADATLRNAEVIEAMGML 217 (580)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhccc
Confidence 44444332 233455666677777776666655554443 4445567778888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 169 NSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN 246 (1293)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~ 246 (1293)
+...++|.+.....+....+..-.......+.-.+-++ ..++..|+|+++.|++|+|.+++...+......|+.....
T Consensus 218 ~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~ 297 (580)
T COG4618 218 GNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIA 297 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHH
Confidence 99999999998888887666555444444444433333 3456678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcH
Q 000774 247 MITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGK 326 (1293)
Q Consensus 247 ~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGK 326 (1293)
.|.++..++.|++|+.+++...+..... -+.+.+...+.++++++.-| +.++++++|+||++++||.+||||||||||
T Consensus 298 ~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~-m~LP~P~g~L~Ve~l~~~PP-g~~~pil~~isF~l~~G~~lgIIGPSgSGK 375 (580)
T COG4618 298 NWKQFVAARQSYKRLNELLAELPAAAER-MPLPAPQGALSVERLTAAPP-GQKKPILKGISFALQAGEALGIIGPSGSGK 375 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccCC-CCCCCCCceeeEeeeeecCC-CCCCcceecceeEecCCceEEEECCCCccH
Confidence 9999999999999999999875543222 12334456799999999765 457899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCcee------------ecCcEEEEcCCccccCccHHHHHc-cCCCCCHHHHHHHHHHcCChhHH
Q 000774 327 TSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDL 393 (1293)
Q Consensus 327 STLl~~l~g~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~-~g~~~~~~~~~~~~~~~~l~~~~ 393 (1293)
|||.++|.|.++|.+|.+.. +.++|||+||+..||+|||.|||. |+.+.|++++.++.+.++.++.+
T Consensus 376 STLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelI 455 (580)
T COG4618 376 STLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELI 455 (580)
T ss_pred HHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHH
Confidence 99999999999999984321 335799999999999999999996 77788899999999999999999
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q 000774 394 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL 473 (1293)
Q Consensus 394 ~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l 473 (1293)
-.+|+||+|.||++|.+|||||||||+||||||.||.+++||||-|+||.+.+..+.+.+.....+|.|+|+||||++.+
T Consensus 456 l~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L 535 (580)
T COG4618 456 LRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSAL 535 (580)
T ss_pred HhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887788899999999999999
Q ss_pred hhCCeEEEEeCCeEEEecChHHHhhc
Q 000774 474 SQVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 474 ~~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
..+|+|.+|++|++...|+.+|.+.+
T Consensus 536 ~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 536 ASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred hhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999888754
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-61 Score=595.35 Aligned_cols=191 Identities=21% Similarity=0.294 Sum_probs=160.6
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 4899999999964 25999999999999999999999999999999999999999999985 1599
Q ss_pred EEccccccc-cccHhhhcCCCCC-CC-HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 988 IIPQSPVLF-SGTVRFNLDPFSE-HS-DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 988 ~v~Q~~~lf-~~ti~~nl~~~~~-~~-~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
|+||++.++ +.|+++|+..... .. +.... +.++. .+++...+....+||||||||++|||||+.+|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~---------~~L~~--l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKS---------EIIKP--LQLERLLDKNVKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHH---------HHHHH--CCCHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999998755 5599999864311 11 11222 33333 24555556677889999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecC
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1126 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 1126 (1293)
+||||||||++||+.+...+.+.|+++.. ++|+|+||||++++.. ||||++|++ ++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999998753 7899999999999877 999999965 8877776
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-58 Score=624.65 Aligned_cols=475 Identities=16% Similarity=0.216 Sum_probs=372.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000774 34 NVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRIIISLVLLYNELGVA 112 (1293)
Q Consensus 34 ~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~~~~~~~i~~~~~l~~~~~~~ 112 (1293)
...+.+.+....++..+|+++++.|..++++.++|+++||+++|++.++..+ ..+..++...+.++++++++++..++.
T Consensus 948 ~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l 1027 (1490)
T TIGR01271 948 PLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYI 1027 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788889999999999999999999999999999999999999865 445566666666666666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 113 SLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFL 192 (1293)
Q Consensus 113 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 192 (1293)
.++.+.++++++.+..++.+..+...+......+...+.+.|.++|+.+||+|++++.+.+++.+..+...+........
T Consensus 1028 ~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1107 (1490)
T TIGR01271 1028 FIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLST 1107 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444444444555555556666666777788899999999999999999999999999888776544332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 000774 193 AACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL 272 (1293)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~ 272 (1293)
..+......++..++.+. .+.+.+.....++|.+..++.++..+..++..+...+..+..+..|++||.++++.+++..
T Consensus 1108 ~~wl~~~~~~i~~~~~~~-~~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~ 1186 (1490)
T TIGR01271 1108 LRWFQMRIDIIFVFFFIA-VTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEP 1186 (1490)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 222222222211111111 0111111122445555555666667777888888899999999999999999997655421
Q ss_pred CC-C---------------CCCC---CCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHH
Q 000774 273 LP-N---------------PPLT---SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM 333 (1293)
Q Consensus 273 ~~-~---------------~~~~---~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l 333 (1293)
.+ . +..+ +..+.|+|+||+|+|++ +.+++|+|+||+|++||++||||+||||||||+++|
T Consensus 1187 ~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~-~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL 1265 (1490)
T TIGR01271 1187 RPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTE-AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265 (1490)
T ss_pred cccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCC-CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 10 0 0000 12346999999999975 357899999999999999999999999999999999
Q ss_pred hcCCCCCCCCce------------eecCcEEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCCCc
Q 000774 334 LGELPPVSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDV 401 (1293)
Q Consensus 334 ~g~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~ 401 (1293)
+|+++ .+|... .+|++|+||||+|.+|+||||+||......++++++++++.+++.+++..+|+|++
T Consensus 1266 ~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLd 1344 (1490)
T TIGR01271 1266 LRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLD 1344 (1490)
T ss_pred hhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccc
Confidence 99997 667421 14668999999999999999999987667789999999999999999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEE
Q 000774 402 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIIL 481 (1293)
Q Consensus 402 t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~ 481 (1293)
|.+|++|.+||||||||++|||||+++|+|||||||||+||+++++.|.+.+ +...+++|+|+||||++.+..+|+|++
T Consensus 1345 t~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L-~~~~~~~TvI~IaHRl~ti~~~DrIlv 1423 (1490)
T TIGR01271 1345 FVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL-KQSFSNCTVILSEHRVEALLECQQFLV 1423 (1490)
T ss_pred cccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHH-HHHcCCCEEEEEecCHHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999998765 445678999999999999999999999
Q ss_pred EeCCeEEEecChHHHhhccHHHHHHHHHhch
Q 000774 482 VHEGMVKEEGTFEDLSNNGELFQKLMENAGK 512 (1293)
Q Consensus 482 l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 512 (1293)
|++|+|++.|+|++|++.++.|++++.....
T Consensus 1424 L~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1424 IEGSSVKQYDSIQKLLNETSLFKQAMSAADR 1454 (1490)
T ss_pred EECCEEEEeCCHHHHHcCCcHHHHHHHHhCh
Confidence 9999999999999999888899999876543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-59 Score=623.23 Aligned_cols=211 Identities=25% Similarity=0.325 Sum_probs=170.4
Q ss_pred cEEEEEEEEEecC-----------CCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC--CcceEEECCeec
Q 000774 908 SIKFEDVVLRYRP-----------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDI 974 (1293)
Q Consensus 908 ~i~~~~v~~~y~~-----------~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p--~~G~I~i~g~~i 974 (1293)
.+.++||++..+. +...+|+|||++++|||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999998742 123699999999999999999999999999999999999874 689999999876
Q ss_pred CCCChHHHhhhceEEccccccccc-cHhhhcCCCC------CCCHH----HHHHHHHHhhHHHHHHHccCCcchhhhcC-
Q 000774 975 AKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFS------EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEA- 1042 (1293)
Q Consensus 975 ~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~nl~~~~------~~~~~----~~~~~l~~~~l~~~i~~lp~gl~~~~~~~- 1042 (1293)
. ....|+.+|||+|++.++.. ||+|||.+.. ..+++ .+.+.++..++.+. .++.++..
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 24567789999999988765 9999996421 11222 23444444444332 23333322
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcch-h-hccCEEEEEeC-
Q 000774 1043 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILLLDS- 1118 (1293)
Q Consensus 1043 ~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~-~-~~~d~i~vl~~- 1118 (1293)
...|||||||||+|||+|+.+|+||+|||||+|||+.+...+.+.|++.. .++|||+++|+++. + +.||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 25799999999999999999999999999999999999999999999875 47999999999984 4 45999999996
Q ss_pred CeEeeecChh
Q 000774 1119 GRVLEYDTPE 1128 (1293)
Q Consensus 1119 G~i~~~g~~~ 1128 (1293)
|+++..|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=574.70 Aligned_cols=458 Identities=15% Similarity=0.162 Sum_probs=362.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 23 LGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISL 102 (1293)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~~~l~~~~~~~~~~i~~~ 102 (1293)
+..++.+...+...+.+.++...+|..+|+|+++++..++++.++|++++++++|++.++.++..+..++...+.+++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~ 144 (555)
T TIGR01194 65 LALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCI 144 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666677889999999999999999999999999999999999999999999987755666666666677777
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH--HHHHHHHHHHH
Q 000774 103 VLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWEN--SFQSKVQNVRN 180 (1293)
Q Consensus 103 ~~l~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~--~~~~~~~~~~~ 180 (1293)
+++++..|.++++.++++++.+.+..+..++.++..++..+..++..+.+.|.++|++++|+|+.++ ...+++.+..+
T Consensus 145 ~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~ 224 (555)
T TIGR01194 145 AYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESAN 224 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHH
Confidence 7777888888887776666666666666677777788888888999999999999999999999854 44555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 181 DELSWFRKAQFLAACNSFILNSIPVLVT--VVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSL 258 (1293)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~s~ 258 (1293)
+..+...+..........+...+..++. +++++.+ .+.+++|.+++++.+...+..|+..+...+..+.++.+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~ 301 (555)
T TIGR01194 225 NIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIAC 301 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444433333222222222222111111 1112222 2689999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcc--cC--CC-C-----CCCCCCCcEEEEeeEEEcCCCC--CCCceeceeEEecCCcEEEEEcCCCCcH
Q 000774 259 KRMEEFLLAEEKI--LL--PN-P-----PLTSGLPAISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGK 326 (1293)
Q Consensus 259 ~Ri~~~l~~~~~~--~~--~~-~-----~~~~~~~~i~~~~~~~~y~~~~--~~~~l~~isl~i~~G~~~~lvG~~GsGK 326 (1293)
+||.++++.++++ .. +. . +.......|+++||+|+|+++. .+++|+|+||++++||+++|+|||||||
T Consensus 302 ~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGK 381 (555)
T TIGR01194 302 QRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGK 381 (555)
T ss_pred HHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCH
Confidence 9999998642211 00 10 0 0011124699999999997431 2469999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCcee------------ecCcEEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHh
Q 000774 327 TSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLD 394 (1293)
Q Consensus 327 STLl~~l~g~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~ 394 (1293)
|||+++|+|+++|++|.... ++..++||+|++++|++|+++|+ ....++++++++++.+++.++++
T Consensus 382 STl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~ 459 (555)
T TIGR01194 382 STLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVK 459 (555)
T ss_pred HHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhc
Confidence 99999999999999984321 34569999999999999999995 23456778889999999999999
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhh-hcCCcEEEEEecCcchh
Q 000774 395 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFL 473 (1293)
Q Consensus 395 ~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~-~~~~~tvi~vtH~~~~l 473 (1293)
.+|+|++|. .+||||||||++||||++++|+++|||||||+||+++++.+.+.+++. ..+++|+|+||||++.+
T Consensus 460 ~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~ 534 (555)
T TIGR01194 460 IEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF 534 (555)
T ss_pred ccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH
Confidence 999999984 789999999999999999999999999999999999999998776543 34689999999999999
Q ss_pred hhCCeEEEEeCCeEEEe
Q 000774 474 SQVDRIILVHEGMVKEE 490 (1293)
Q Consensus 474 ~~~d~i~~l~~G~i~~~ 490 (1293)
+.||+|++|++|++++.
T Consensus 535 ~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 535 ELADQIIKLAAGCIVKD 551 (555)
T ss_pred HhCCEEEEEECCEEEEe
Confidence 99999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-60 Score=552.45 Aligned_cols=443 Identities=25% Similarity=0.363 Sum_probs=339.1
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCceeec--------------
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------- 348 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~~~-------------- 348 (1293)
+.++++|++++|+ +.++|+||||++++||++||+|.||||||||+|+|+|.++|++|. +.+.
T Consensus 7 ~ll~~~~i~K~Fg---gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~-I~~~G~~~~~~sp~~A~~ 82 (500)
T COG1129 7 PLLELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE-ILIDGKPVAFSSPRDALA 82 (500)
T ss_pred ceeeeecceEEcC---CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCce-EEECCEEccCCCHHHHHh
Confidence 4689999999997 468999999999999999999999999999999999999999994 3332
Q ss_pred CcEEEEcCCcccc-CccHHHHHccCCCC-------CHHHHH----HHHHHcCChhHHhcCCCCCcccccCCCCCCChHHH
Q 000774 349 GTVAYVPQVSWIF-NATVRDNILFGSAF-------EPARYE----KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 416 (1293)
Q Consensus 349 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~~-------~~~~~~----~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqk 416 (1293)
..|+.|+|+..|+ +.||.|||.+|+.. +..++. ++++..++. . + ......+||+|||
T Consensus 83 ~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~-------~--~--~~~~v~~Lsiaqr 151 (500)
T COG1129 83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD-------I--D--PDTLVGDLSIAQR 151 (500)
T ss_pred CCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC-------C--C--hhhhhhhCCHHHH
Confidence 2499999999986 88999999998643 223332 223333322 0 0 2344578999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecCh-H
Q 000774 417 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF-E 494 (1293)
Q Consensus 417 qRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~-~ 494 (1293)
|-|+|||||..+++|+|||||||+|+....+.+++.+.+...+|.++|+||||++++.. ||||.||.||+.+..++. .
T Consensus 152 Q~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~ 231 (500)
T COG1129 152 QMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAA 231 (500)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccccc
Confidence 99999999999999999999999999999999999777777789999999999999865 899999999998865431 1
Q ss_pred HHhhccHHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccccccchhhhhhhcCcccHHH
Q 000774 495 DLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKV 574 (1293)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 574 (1293)
++..
T Consensus 232 ~~~~---------------------------------------------------------------------------- 235 (500)
T COG1129 232 ETSE---------------------------------------------------------------------------- 235 (500)
T ss_pred CCCH----------------------------------------------------------------------------
Confidence 1000
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 575 LSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLY 654 (1293)
Q Consensus 575 ~~~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 654 (1293)
T Consensus 236 -------------------------------------------------------------------------------- 235 (500)
T COG1129 236 -------------------------------------------------------------------------------- 235 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 655 AAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLL 734 (1293)
Q Consensus 655 ~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1293)
+.+ +..+.
T Consensus 236 -------------------------------------~~l-------v~~Mv---------------------------- 243 (500)
T COG1129 236 -------------------------------------DEL-------VRLMV---------------------------- 243 (500)
T ss_pred -------------------------------------HHH-------HHHhh----------------------------
Confidence 000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 735 LLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRL 814 (1293)
Q Consensus 735 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1293)
T Consensus 244 -------------------------------------------------------------------------------- 243 (500)
T COG1129 244 -------------------------------------------------------------------------------- 243 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccc
Q 000774 815 EIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVI 894 (1293)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~ 894 (1293)
+ + .+.+. .|. +.
T Consensus 244 -------------------G------------------------------r-------------~~~~~--~~~--~~-- 255 (500)
T COG1129 244 -------------------G------------------------------R-------------ELEDL--FPE--PP-- 255 (500)
T ss_pred -------------------C------------------------------c-------------chhhh--ccc--cc--
Confidence 0 0 00000 000 00
Q ss_pred CCCCCCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeec
Q 000774 895 ESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 974 (1293)
Q Consensus 895 ~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i 974 (1293)
.. .+....++++|++.. ..++|+||++.+||++||.|--|||+|-++++|+|..++.+|+|.+||+++
T Consensus 256 -~~-----~~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v 323 (500)
T COG1129 256 -EE-----GIGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPV 323 (500)
T ss_pred -cc-----CCCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEc
Confidence 00 001123678887643 258999999999999999999999999999999999999999999999999
Q ss_pred CCCChH-HHhhhceEEcccc---ccc-cccHhhhcCCC--CCCCHH-HHHHHHHHhhHHHHHHHccCCcchhhhcCCCCC
Q 000774 975 AKFGLM-DLRKILGIIPQSP---VLF-SGTVRFNLDPF--SEHSDA-DLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 1046 (1293)
Q Consensus 975 ~~~~~~-~~r~~i~~v~Q~~---~lf-~~ti~~nl~~~--~~~~~~-~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~L 1046 (1293)
..-++. ..+..|+|||.|- -+| ..+|++|+... ...... -+....++....+++.++...... ......+|
T Consensus 324 ~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s-~~~~v~~L 402 (500)
T COG1129 324 RIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS-PEQPIGTL 402 (500)
T ss_pred cCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC-ccchhhcC
Confidence 877766 5666799999987 355 55999998642 111101 233444555566777765433222 22445679
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeee
Q 000774 1047 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 1124 (1293)
Q Consensus 1047 SgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~ 1124 (1293)
|||++||+.|||+|..+|+||||||||.|+|..++.+|++.|+++. +|.+||+||.++.++.. ||||+||.+|+++..
T Consensus 403 SGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred CchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999976 57999999999999875 999999999999986
Q ss_pred cChhh
Q 000774 1125 DTPEE 1129 (1293)
Q Consensus 1125 g~~~e 1129 (1293)
-+.++
T Consensus 483 ~~~~~ 487 (500)
T COG1129 483 LDREE 487 (500)
T ss_pred ecccc
Confidence 44443
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-57 Score=565.02 Aligned_cols=469 Identities=16% Similarity=0.134 Sum_probs=343.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 637 QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTF 716 (1293)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~ 716 (1293)
..++.++..++....+.+...++|.++++++++.|+.+|+++++|++++|+++|++.+...+. .+..++..++.+++.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~ 139 (547)
T PRK10522 61 LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSA 139 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 345667888888899999999999999999999999999999999999999999999987654 3555666777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHH---HHHHHHHHHHH
Q 000774 717 VLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY---DRMADINGKSM 793 (1293)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~---~~~~~~~~~~~ 793 (1293)
+++++++|.+.+++++.+++.+.+..++.+..++..+......+.+.+.+.|.++|+++++ ++.+ +++.+++.+..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 8888888887776665555544444444444444444445667788899999999999995 4432 34555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 794 DKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENS 873 (1293)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 873 (1293)
+...+.................++... +++.+.+.. +..+.. ..+.++.+..+...+..++..+......+...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~ 292 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLG---AIGLVFYMA-NSLGWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSA 292 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHhhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544433322221111111111111111 111111111 100000 01122222333334556788888888888999
Q ss_pred HHHHHHHhhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHH
Q 000774 874 LNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 953 (1293)
Q Consensus 874 ~~a~~Rl~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll 953 (1293)
..+.+|+.++.+.+.+.... ...+ .+..+.++++||+|+|+++ +++|+|+||+|+|||++||+||||||||||+
T Consensus 293 ~~a~~ri~~l~~~~~~~~~~--~~~~---~~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~ 366 (547)
T PRK10522 293 QVAFNKLNKLALAPYKAEFP--RPQA---FPDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLA 366 (547)
T ss_pred HHHHHHHHHHhccccccccc--cccc---cCcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHH
Confidence 99999999987544332110 1111 1112469999999999743 3699999999999999999999999999999
Q ss_pred HHHhcCCCCCcceEEECCeecCCCChHHHhhhceEEccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccC
Q 000774 954 NTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSL 1033 (1293)
Q Consensus 954 ~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~ 1033 (1293)
++|+|+++|++|+|.+||.|+++.+...+|++|+||||++.+|++|+++| ....++++++++++.+++.+.+.. |.
T Consensus 367 ~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~ 442 (547)
T PRK10522 367 MLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-ED 442 (547)
T ss_pred HHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cc
Confidence 99999999999999999999999999999999999999999999999998 223456666666666655544432 22
Q ss_pred CcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhccC
Q 000774 1034 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCD 1111 (1293)
Q Consensus 1034 gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d 1111 (1293)
+. ..|.+||||||||++||||++++|+|||||||||+||+++++.+.+.+.+.. .++|+|+||||++.+..||
T Consensus 443 ~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d 517 (547)
T PRK10522 443 GR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHAD 517 (547)
T ss_pred cC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCC
Confidence 21 1367899999999999999999999999999999999999999999987654 4799999999999999999
Q ss_pred EEEEEeCCeEeee-cChh
Q 000774 1112 RILLLDSGRVLEY-DTPE 1128 (1293)
Q Consensus 1112 ~i~vl~~G~i~~~-g~~~ 1128 (1293)
+|++|++|++++. |++.
T Consensus 518 ~i~~l~~G~i~e~~~~~~ 535 (547)
T PRK10522 518 RLLEMRNGQLSELTGEER 535 (547)
T ss_pred EEEEEECCEEEEecCCch
Confidence 9999999999987 4433
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-57 Score=511.81 Aligned_cols=523 Identities=19% Similarity=0.228 Sum_probs=378.1
Q ss_pred HHHHHHHHHhhhhhhhhhhccCCCcCCCCc-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 000774 594 CYFLTETLRVSSSTWLSYWTDQSSLKTHGP-LF-YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAP 671 (1293)
Q Consensus 594 ~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p 671 (1293)
+..+...+.+..|.|+-..-|........+ +. ...+...+.+.+.++..+++.++...+.+....+...+|...+++|
T Consensus 31 fS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~ 110 (580)
T COG4618 31 FSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAP 110 (580)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhH
Confidence 334445555556666654445443322222 22 3334445566788889999999999999999999999999988776
Q ss_pred ccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 672 MVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREV 751 (1293)
Q Consensus 672 ~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 751 (1293)
..--......+. -+|+++++.++...-...+...-..-..+.+++.+.|++.++.+...++++.+..+-....++-
T Consensus 111 l~~~~~g~~~Q~----LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p 186 (580)
T COG4618 111 LLRRGSGDGLQP----LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKP 186 (580)
T ss_pred HhhcCCCccccc----hhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 653322222222 2577777776654333333333334455666777777776665555444444433333333333
Q ss_pred HHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 000774 752 KRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV----GGLMIWLTAT 827 (1293)
Q Consensus 752 ~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 827 (1293)
-+...+.....+.+...+.++.++|++.+......+++.+....+........-.+..++.....+ -..+..+.++
T Consensus 187 ~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~ 266 (580)
T COG4618 187 LKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAW 266 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccee
Confidence 333333444556677889999999999988777766666554444433322222222222111111 1112222222
Q ss_pred HHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCCCCCCCCCCCCc
Q 000774 828 FAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG 907 (1293)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~~~~~~g 907 (1293)
+. ..+..+....+++. ..+.....++...+..|..+.....+..|+.+.+...++....... ...+|
T Consensus 267 Lv--i~ge~t~G~mIA~S-----Il~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~L------P~P~g 333 (580)
T COG4618 267 LV--IKGEITPGMMIAGS-----ILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPL------PAPQG 333 (580)
T ss_pred eE--EcCcCCcchhhHHH-----HHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCC------CCCCc
Confidence 22 23333322111111 1122344577777888888888899999999998754443221111 12357
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.+.++++++.=++..+++|+|+||++.+||-+|||||||||||||.|+|.|.++|.+|.|++||.|+.+++++++-++||
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiG 413 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIG 413 (580)
T ss_pred eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccC
Confidence 79999999976666678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000774 988 IIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1066 (1293)
Q Consensus 988 ~v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 1066 (1293)
|+||+-.||+|||.|||.-+. +.+++.+.+|++.++.||.|.++|+||||.+++.|..||||||||++|||||..+|.+
T Consensus 414 YLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~l 493 (580)
T COG4618 414 YLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFL 493 (580)
T ss_pred cCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcE
Confidence 999999999999999997555 6677889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhc
Q 000774 1067 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1067 LlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
++||||-|+||.+-|+.+.++|.+.. +|+|+|+||||.+.+..+|+|++|++|++..+|+.+|.+++
T Consensus 494 vVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 494 VVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred EEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999998865 58999999999999999999999999999999999999864
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-58 Score=507.75 Aligned_cols=468 Identities=22% Similarity=0.341 Sum_probs=373.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-hHHHHH
Q 000774 38 VGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNEL-GVASLL 115 (1293)
Q Consensus 38 ~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~~-~l~~~~~~~~~~i~~~~~l~~~~-~~~~l~ 115 (1293)
.+......+-...|.++.+|+..++.+..+|.+..-+.....-++.+.. .+..+....+-+.+.++++++.. ||.+++
T Consensus 9 v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~ 88 (497)
T COG5265 9 VGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALT 88 (497)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHH
Confidence 3344445666778999999999999999999887777666666666543 34444555566666666555544 445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 116 GALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAAC 195 (1293)
Q Consensus 116 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1293)
.++.+.++..+.......-....++..+.-.+......+.+-+.+++|.|+-|+.+..++.+..+.+.+...+...-..+
T Consensus 89 t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~ 168 (497)
T COG5265 89 TLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLV 168 (497)
T ss_pred HHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHH
Confidence 55544444433333322233445566666667777888999999999999999999999888777776665554332222
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Q 000774 196 NSFILNSIP--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILL 273 (1293)
Q Consensus 196 ~~~~~~~~~--~~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~ 273 (1293)
..+....+. ........+...+..|.+|+|.++....+...+..|+..++..+..+.+++.-.++..+++..+.+...
T Consensus 169 Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d 248 (497)
T COG5265 169 LNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSD 248 (497)
T ss_pred HHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhcc
Confidence 222221111 122333445556678999999999999999999999999999999999999999999999887655422
Q ss_pred C-C-CCCC-CCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----
Q 000774 274 P-N-PPLT-SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---- 346 (1293)
Q Consensus 274 ~-~-~~~~-~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~---- 346 (1293)
. + ++.. .....+.|+||+|.|.+ .+++|+++||++++|+++|+||++|+||||++++|.++|++.+|....
T Consensus 249 ~pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qd 326 (497)
T COG5265 249 APDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQD 326 (497)
T ss_pred CCCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchh
Confidence 1 1 1122 22346999999999974 689999999999999999999999999999999999999999995432
Q ss_pred --------ecCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHH
Q 000774 347 --------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 417 (1293)
Q Consensus 347 --------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkq 417 (1293)
+|+.||.|||+..||++|+..||.+|++ .+++++.++++.++++++++.+|+|++|.+||+|-.||||+||
T Consensus 327 ir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekq 406 (497)
T COG5265 327 IRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQ 406 (497)
T ss_pred HHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHH
Confidence 3456999999999999999999999986 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHh
Q 000774 418 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 497 (1293)
Q Consensus 418 RialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 497 (1293)
||||||+++++|+||+|||+||+||.+|++.|... ++...+|+|.++|+||++++-.||.|+||++|+|++.|+|++|+
T Consensus 407 rvaiar~ilk~p~il~~deatsaldt~te~~iq~~-l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll 485 (497)
T COG5265 407 RVAIARTILKNPPILILDEATSALDTHTEQAIQAA-LREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELL 485 (497)
T ss_pred HHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHH-HHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHH
Confidence 99999999999999999999999999999999765 45567899999999999999999999999999999999999999
Q ss_pred hccHHHHHHHH
Q 000774 498 NNGELFQKLME 508 (1293)
Q Consensus 498 ~~~~~~~~~~~ 508 (1293)
..+|.|++||.
T Consensus 486 ~~~g~ya~mw~ 496 (497)
T COG5265 486 AAGGLYAEMWR 496 (497)
T ss_pred HcCChHHHHhc
Confidence 99999999984
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-55 Score=545.33 Aligned_cols=452 Identities=19% Similarity=0.248 Sum_probs=342.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 28 EAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYN 107 (1293)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~~~l~~~~~~~~~~i~~~~~l~~ 107 (1293)
.....+...+++.++...+|..+|+|++++|..++++.++|++++++++|++.+..++..+..++..++.++++++++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~ 144 (547)
T PRK10522 65 TLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAW 144 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556677888999999999999999999999999999999999999999998665667777778888888888888
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcch---HHHHHHHHHHHHHHHH
Q 000774 108 ELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWE---NSFQSKVQNVRNDELS 184 (1293)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e---~~~~~~~~~~~~~~~~ 184 (1293)
..|.++++.++++++.+++..++.++.++..++..+..++..+.+.|.++|+++++ ++.+ +.+.+++++..++..+
T Consensus 145 ~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~ 223 (547)
T PRK10522 145 LSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRH 223 (547)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHh
Confidence 88888888888777777777888888888888889999999999999999999996 3333 3455666665554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 185 WFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGG---DLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRM 261 (1293)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~s~~Ri 261 (1293)
...+..........+..... .+.++.+.+.++ ..+.+.+..+..+...+..|+..+...+..+..+..+++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri 299 (547)
T PRK10522 224 HIIRADTFHLSAVNWSNIMM----LGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKL 299 (547)
T ss_pred hhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332222222211111 111221222211 12233333333333345679999999999999999999999
Q ss_pred HHHhhhhhcccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 000774 262 EEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 341 (1293)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~ 341 (1293)
.++++.+++...+.+...+....|+++|++|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++
T Consensus 300 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~ 377 (547)
T PRK10522 300 NKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQS 377 (547)
T ss_pred HHHhccccccccccccccCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 99876543221111111111246999999999973 3579999999999999999999999999999999999999999
Q ss_pred CCce------------eecCcEEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCC
Q 000774 342 DASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 409 (1293)
Q Consensus 342 g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~ 409 (1293)
|... .+++.|+||+|++++|++|+++| +...++++++++++.+++..++.. +++. .+|.
T Consensus 378 G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~ 448 (547)
T PRK10522 378 GEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNL 448 (547)
T ss_pred eEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCC
Confidence 8432 13567999999999999999999 444566777778888877665543 3221 1478
Q ss_pred CCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEeCCeEE
Q 000774 410 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVK 488 (1293)
Q Consensus 410 ~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~ 488 (1293)
+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+... +++|+|+||||++.+..||+|++|++|+++
T Consensus 449 ~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 528 (547)
T PRK10522 449 KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLS 528 (547)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999887654432 489999999999999999999999999999
Q ss_pred Ee-cChHH
Q 000774 489 EE-GTFED 495 (1293)
Q Consensus 489 ~~-g~~~~ 495 (1293)
+. |++.+
T Consensus 529 e~~~~~~~ 536 (547)
T PRK10522 529 ELTGEERD 536 (547)
T ss_pred EecCCchh
Confidence 85 44433
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-57 Score=515.08 Aligned_cols=448 Identities=24% Similarity=0.390 Sum_probs=341.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCceeec--------------
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------- 348 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~~~-------------- 348 (1293)
+.++++++++.|+ +-.+++||||+|++||++||+|+||+|||||+++|.|+|+|++|. +.+.
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~Ge-I~v~G~~v~~~sP~dA~~ 78 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE-IRVDGKEVRIKSPRDAIR 78 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcce-EEECCEEeccCCHHHHHH
Confidence 4689999999997 467999999999999999999999999999999999999999994 3332
Q ss_pred CcEEEEcCCcccc-CccHHHHHccCCCC------CH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHH
Q 000774 349 GTVAYVPQVSWIF-NATVRDNILFGSAF------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 417 (1293)
Q Consensus 349 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~~------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkq 417 (1293)
..||+|+|++.|+ +.||.|||.+|.+. +. +++.+..+..++.-+ ..+....||-|+||
T Consensus 79 ~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd-----------p~~~V~dLsVG~qQ 147 (501)
T COG3845 79 LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-----------PDAKVADLSVGEQQ 147 (501)
T ss_pred cCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC-----------ccceeecCCcchhH
Confidence 3599999999997 67999999999753 22 233333444443322 23455789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHH
Q 000774 418 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 496 (1293)
Q Consensus 418 RialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 496 (1293)
||.|-+|||++|++|||||||+.|-|...+.+++.+.+....|+|||+|||++.++.. |||+.||.+|+++..-++.
T Consensus 148 RVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~~-- 225 (501)
T COG3845 148 RVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPV-- 225 (501)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecCC--
Confidence 9999999999999999999999999999999999887778889999999999999876 8999999999976432100
Q ss_pred hhccHHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccccccchhhhhhhcCcccHHHHH
Q 000774 497 SNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLS 576 (1293)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 576 (1293)
. . .. .++
T Consensus 226 ~------------------------------------~---------------------~t---~~e------------- 232 (501)
T COG3845 226 A------------------------------------E---------------------TT---EEE------------- 232 (501)
T ss_pred C------------------------------------C---------------------CC---HHH-------------
Confidence 0 0 00 000
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 577 RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAA 656 (1293)
Q Consensus 577 ~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 656 (1293)
T Consensus 233 -------------------------------------------------------------------------------- 232 (501)
T COG3845 233 -------------------------------------------------------------------------------- 232 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 657 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 736 (1293)
Q Consensus 657 ~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 736 (1293)
T Consensus 233 -------------------------------------------------------------------------------- 232 (501)
T COG3845 233 -------------------------------------------------------------------------------- 232 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 737 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 816 (1293)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1293)
+.++
T Consensus 233 --------------la~l-------------------------------------------------------------- 236 (501)
T COG3845 233 --------------LAEL-------------------------------------------------------------- 236 (501)
T ss_pred --------------HHHH--------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccCC
Q 000774 817 VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES 896 (1293)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~e~~~~~~~ 896 (1293)
++ + .-+..+.+
T Consensus 237 -------------Mv--G-----------------------------------------------~~v~~~~~------- 247 (501)
T COG3845 237 -------------MV--G-----------------------------------------------REVVLRVV------- 247 (501)
T ss_pred -------------hc--C-----------------------------------------------Cccccccc-------
Confidence 00 0 00000000
Q ss_pred CCCCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeec-C
Q 000774 897 NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI-A 975 (1293)
Q Consensus 897 ~~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i-~ 975 (1293)
..+..|...-++++|++..-+.+ .+.+++|||+|.+||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|.|+ .
T Consensus 248 --~~~~~pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~ 324 (501)
T COG3845 248 --KPPSTPGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG 324 (501)
T ss_pred --cCCCCCCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccc
Confidence 00011223358999999875432 3689999999999999999999999999999999999999999999999997 7
Q ss_pred CCChHHHhhh-ceEEccccc----cccccHhhhcCCCCCC-----CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCC
Q 000774 976 KFGLMDLRKI-LGIIPQSPV----LFSGTVRFNLDPFSEH-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1045 (1293)
Q Consensus 976 ~~~~~~~r~~-i~~v~Q~~~----lf~~ti~~nl~~~~~~-----~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~ 1045 (1293)
..++...|+. ++|||.|.. ..+.|+.||+.+.... +..-+..-.-.....+.++++.-.- .-......+
T Consensus 325 ~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~-~~~~~~a~~ 403 (501)
T COG3845 325 RLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA-PSPDAPARS 403 (501)
T ss_pred cCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC-CCCCcchhh
Confidence 7788887775 999999983 4466999998532111 1000111111122334555532210 112234567
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEee
Q 000774 1046 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1123 (1293)
Q Consensus 1046 LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 1123 (1293)
||||++||+-+||-|.++|++||..+||.|||..+.+.|.+.|.+.. .|+.|++||-+++++.. ||||.||.+|+++.
T Consensus 404 LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 404 LSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred cCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 99999999999999999999999999999999999999999998876 47899999999999877 99999999999998
Q ss_pred ecChhh
Q 000774 1124 YDTPEE 1129 (1293)
Q Consensus 1124 ~g~~~e 1129 (1293)
...+++
T Consensus 484 ~~~~~~ 489 (501)
T COG3845 484 IVPPEE 489 (501)
T ss_pred cccccc
Confidence 877765
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-55 Score=559.36 Aligned_cols=472 Identities=21% Similarity=0.278 Sum_probs=388.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000774 35 VMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRIIISLVLLYNELGVAS 113 (1293)
Q Consensus 35 ~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~~~~~~~i~~~~~l~~~~~~~~ 113 (1293)
....+.+.-..|-..+++++++-|..+|+..++|.|+||++.|++.++..+ ..+..++...+.++..++++-+..++..
T Consensus 882 ~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fl 961 (1381)
T KOG0054|consen 882 FAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFL 961 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 334556677778888899999999999999999999999999999999855 3455555666666666667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 114 LLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLA 193 (1293)
Q Consensus 114 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (1293)
++.+.+.++++.+..++.+..+...+-....++-..+.++|.+.|+.+|++|+.++.|.++..+..+...+........+
T Consensus 962 i~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~ 1041 (1381)
T KOG0054|consen 962 IAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISAN 1041 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 77777777777777777777777777777778888999999999999999999999999999888887666544433334
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 000774 194 ACNSFILNSIPVLVTVVSF-GMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL 272 (1293)
Q Consensus 194 ~~~~~~~~~~~~~v~~~~~-~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~ 272 (1293)
.+..+-+.++..++++.+. .+.+...+.+++|.+-..+++.-.+..-+..+......+-+..+|.+||.++.+.|++.+
T Consensus 1042 RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p 1121 (1381)
T KOG0054|consen 1042 RWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAP 1121 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCC
Confidence 4444444554443333222 222222233778999888888888888888889999999999999999999998765521
Q ss_pred C---CC--CCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCce--
Q 000774 273 L---PN--PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA-- 345 (1293)
Q Consensus 273 ~---~~--~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~-- 345 (1293)
. .. ++.=|..+.|+|+|++.+|.+ +.++||+||||+|++||+|||||++|||||||+++|-++.+|.+|.+.
T Consensus 1122 ~~~~~~~pp~~WP~~G~I~f~~~~~RYrp-~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~ID 1200 (1381)
T KOG0054|consen 1122 LEIEESRPPPSWPSKGEIEFEDLSLRYRP-NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILID 1200 (1381)
T ss_pred CCCcCCCCCCCCCCCCeEEEEEeEEEeCC-CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEc
Confidence 1 11 111123457999999999975 457899999999999999999999999999999999999999988432
Q ss_pred ----------eecCcEEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHH
Q 000774 346 ----------VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 415 (1293)
Q Consensus 346 ----------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGq 415 (1293)
.+|++++.+||||.||+||||.|+-=-.++++++++++++.|+|.+.+..+|+|+++.+.|+|.|+|-||
T Consensus 1201 gvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQ 1280 (1381)
T KOG0054|consen 1201 GVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQ 1280 (1381)
T ss_pred CeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHH
Confidence 2577899999999999999999997555688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHH
Q 000774 416 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 495 (1293)
Q Consensus 416 kqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~ 495 (1293)
||-++|||||+++++||+|||+|+++|++|...| +..++..-+++|||.|+||++++.++|||+|||+|+++|.|+|++
T Consensus 1281 RQLlCLARALLr~skILvLDEATAsVD~~TD~lI-Q~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1281 RQLLCLARALLRKSKILVLDEATASVDPETDALI-QKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAE 1359 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEecccccCChHHHHHH-HHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHH
Confidence 9999999999999999999999999999987666 456677778999999999999999999999999999999999999
Q ss_pred Hhhc-cHHHHHHHH
Q 000774 496 LSNN-GELFQKLME 508 (1293)
Q Consensus 496 l~~~-~~~~~~~~~ 508 (1293)
|+++ ++.|+.+..
T Consensus 1360 Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1360 LLSDKDSLFSSLLK 1373 (1381)
T ss_pred HHhCCcchHHHHHH
Confidence 9987 556655544
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-53 Score=536.28 Aligned_cols=510 Identities=15% Similarity=0.147 Sum_probs=386.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccCCCcCCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 587 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL-----FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 661 (1293)
Q Consensus 587 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 661 (1293)
.+++.+++.++...+.+..|.+.+..++.......... .+..++.++.+...+..++..++......+...++|+
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677778888888888877765432111111 1222233334445555566666666677777778888
Q ss_pred HHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000774 662 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI-VSTMSLWAIMPLLLLFYAA 740 (1293)
Q Consensus 662 ~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~ 740 (1293)
.++++....++.||+. ++|++++|+++|++.+.+.+...+..++..++.++..++.++. .+|.+.++++..+++.+.+
T Consensus 177 ~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i 255 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVV 255 (659)
T ss_pred HHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 8888877788888886 7899999999999999999988888888888887776666664 7777766666666666666
Q ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000774 741 YLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGG- 819 (1293)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 819 (1293)
.+++.+...+..+......+.+.+...|.++|+++|++|+.++...+++.+..+...+..........+......++..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 335 (659)
T TIGR00954 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKY 335 (659)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6777777777777788888899999999999999999999999988888888877777766666666666555554432
Q ss_pred ---HHHHHHHHH-HHHhc----CcccchhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 000774 820 ---LMIWLTATF-AVVQN----GSAENQEAFASTMGLLLS---YALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 888 (1293)
Q Consensus 820 ---~~~~~~~~~-~~~~~----~~~~~~~~~~~~~g~~l~---~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~~~ 888 (1293)
.+.++++.. .+... +..+. ...++.++. +...+..++..+......++....+.+|+.++++.++
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~g~~t~----g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 336 TWSAVGLVAVSIPIFDKTHPAFLEMSE----EELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222212 22211 22221 122332333 3456677888888889999999999999999987533
Q ss_pred CCc-------cccC--CC----C-----C--CCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCC
Q 000774 889 EAP-------LVIE--SN----R-----P--PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 948 (1293)
Q Consensus 889 e~~-------~~~~--~~----~-----~--~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsG 948 (1293)
+.. ...+ .. . + .......+.|+++||+++|+++ +++|+|+||+|++||++||+||||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsG 490 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCG 490 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCC
Confidence 210 0000 00 0 0 0000123569999999999643 36999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEEccccccccccHhhhcCCC--------CCCCHHHHHHHHH
Q 000774 949 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF--------SEHSDADLWEALE 1020 (1293)
Q Consensus 949 KSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~--------~~~~~~~~~~~l~ 1020 (1293)
||||+++|+|+++|++|+|.+++ |++++||||+|.+|++|++||+.+. ...++++++++++
T Consensus 491 KSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~ 559 (659)
T TIGR00954 491 KSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILD 559 (659)
T ss_pred HHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHH
Confidence 99999999999999999998863 5689999999999999999999753 2245778999999
Q ss_pred HhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Q 000774 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 1100 (1293)
Q Consensus 1021 ~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~v 1100 (1293)
.+++.+++++ |.|+|+..+ .+.+||||||||++||||++++|++|||||||++||+++++.+++.+++ .++|+|+|
T Consensus 560 ~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~--~~~tvI~i 635 (659)
T TIGR00954 560 NVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSV 635 (659)
T ss_pred HcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH--cCCEEEEE
Confidence 9999999988 899999876 5678999999999999999999999999999999999999999999987 48999999
Q ss_pred ecCcchhhccCEEEEEe
Q 000774 1101 AHRLNTIIDCDRILLLD 1117 (1293)
Q Consensus 1101 tH~~~~~~~~d~i~vl~ 1117 (1293)
|||++++..||++++|+
T Consensus 636 sH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 636 SHRKSLWKYHEYLLYMD 652 (659)
T ss_pred eCchHHHHhCCEEEEEe
Confidence 99999998899999997
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-53 Score=531.63 Aligned_cols=457 Identities=17% Similarity=0.150 Sum_probs=356.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000774 20 GVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRI 98 (1293)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~-~~l~~~~~~~~~~ 98 (1293)
..++..++.+...+...++..++...++...|++....+..++++ ++|++.+++++|++.+.+.+ ..+..++..++.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~i 226 (659)
T TIGR00954 148 ASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDV 226 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444333334445555566666666666655555556654 68999999999999999855 4566677777777
Q ss_pred HHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHH
Q 000774 99 IISLVLLYN-ELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQN 177 (1293)
Q Consensus 99 i~~~~~l~~-~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~~~~~~~~ 177 (1293)
+++++.++. ..+.++++.++.+++.+.+..++.+++.+..++.++..++..+...|.++|+++||.|+.|+...+++++
T Consensus 227 i~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~ 306 (659)
T TIGR00954 227 ILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMS 306 (659)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHH
Confidence 777776775 5555667777777777788888999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh-----cCCCCHHHHHH-HHH---HHHHHHHHHHHH
Q 000774 178 VRNDELSWFRKAQFLAACNSFILNSIPV----LVTVVSFGMFTLL-----GGDLTPARAFT-SLS---LFAVLRFPLFML 244 (1293)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~-----~~~lt~~~~~~-~l~---~~~~l~~pl~~l 244 (1293)
..++..+...+.....+....+..++.. .+.++..|...+. .|.+|.|..++ ++. ++..+..|+..+
T Consensus 307 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l 386 (659)
T TIGR00954 307 SFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRL 386 (659)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777766666655555444332 2222222332222 26788887665 333 356668899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccC--------CC-----------------CCCCCCCCcEEEEeeEEEcCCCCC
Q 000774 245 PNMITQVVNANVSLKRMEEFLLAEEKILL--------PN-----------------PPLTSGLPAISIRNGYFSWDSKAE 299 (1293)
Q Consensus 245 ~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~--------~~-----------------~~~~~~~~~i~~~~~~~~y~~~~~ 299 (1293)
...+..++++.++.+||.++++.+++... +. .........|+++|++|.|++ +
T Consensus 387 ~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~ 464 (659)
T TIGR00954 387 MLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--G 464 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--C
Confidence 99999999999999999999976443210 00 000112235999999999963 3
Q ss_pred CCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-ecCcEEEEcCCccccCccHHHHHccCC-----
Q 000774 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-IRGTVAYVPQVSWIFNATVRDNILFGS----- 373 (1293)
Q Consensus 300 ~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-~~~~i~~v~Q~~~l~~~Tv~eni~~g~----- 373 (1293)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..++||||+|++|++|++|||.++.
T Consensus 465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 544 (659)
T TIGR00954 465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDM 544 (659)
T ss_pred CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhh
Confidence 57999999999999999999999999999999999999999884322 245799999999999999999999873
Q ss_pred ---CCCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHH
Q 000774 374 ---AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 450 (1293)
Q Consensus 374 ---~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~ 450 (1293)
..++++++++++.+++.+.++. |.|++|..+ .+.+||||||||++|||||+++|+++|||||||+||+++++++.
T Consensus 545 ~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~ 622 (659)
T TIGR00954 545 KRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMY 622 (659)
T ss_pred hccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 2345678889999999988877 889999876 56799999999999999999999999999999999999999998
Q ss_pred HHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeC
Q 000774 451 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 484 (1293)
Q Consensus 451 ~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~ 484 (1293)
+.+.+ .|+|+|+||||++.++.||++++|+.
T Consensus 623 ~~l~~---~~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 623 RLCRE---FGITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHH---cCCEEEEEeCchHHHHhCCEEEEEeC
Confidence 76543 37999999999999999999999973
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-53 Score=479.86 Aligned_cols=200 Identities=22% Similarity=0.310 Sum_probs=164.4
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.+.+.||+|+|+++. .++++++|-|.+++++|+|||||+|||||+|+++|.+.|+.|.|.-.-. .+++
T Consensus 389 vi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred eEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 489999999998664 6899999999999999999999999999999999999999999976522 2355
Q ss_pred EEccccc---cccccHhhhcCC-CC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 988 IIPQSPV---LFSGTVRFNLDP-FS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 988 ~v~Q~~~---lf~~ti~~nl~~-~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
+..|+.. .++.+.-++..+ +. ....++++..+.++|+....+..| ..+||+|||.||++||++++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHHHhc
Confidence 5566542 334466666542 33 245577888888888764433333 35799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeee-cChhhhh
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DTPEELL 1131 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~-g~~~el~ 1131 (1293)
+|.+|||||||+|||.++...+.++|.+ +.++||+||||...+.+ +++|++.++|.+... |+.....
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe--~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINE--FPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhc--cCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 9999999999999999999999999988 67899999999999988 999999999988765 6665544
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-50 Score=454.25 Aligned_cols=200 Identities=19% Similarity=0.305 Sum_probs=166.3
Q ss_pred ccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhc
Q 000774 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 986 (1293)
Q Consensus 907 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 986 (1293)
..+++.+|+|.|.++.++.+.++++.+..-+++++||+||+||||+++++.|...|..|.+.+. -|.+|
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~-----------~r~ri 429 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH-----------PRLRI 429 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeec-----------cccee
Confidence 3589999999998775579999999999999999999999999999999999999999998876 36789
Q ss_pred eEEccccccc-cccHhh--hc-CCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 987 GIIPQSPVLF-SGTVRF--NL-DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 987 ~~v~Q~~~lf-~~ti~~--nl-~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
+|..|...=| +..+.. -+ ..++..+++++++.+...|+..-+..- ....||||||-||++|.....
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~----------si~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQ----------SIASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhc----------cccccCCcchhHHHHHHHhcC
Confidence 9999987533 333221 11 123334788899888886665433221 135699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeee-cChhh
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DTPEE 1129 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~-g~~~e 1129 (1293)
+|++|+|||||++||.++...+-++|+. .++.||+||||.+++.. |+.+|+.++|+|... |+.++
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~--F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~ 566 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKN--FNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDK 566 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHh--cCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHH
Confidence 9999999999999999999999999998 56779999999999988 999999999999764 44433
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-49 Score=441.84 Aligned_cols=239 Identities=36% Similarity=0.691 Sum_probs=223.5
Q ss_pred ccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhc
Q 000774 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 986 (1293)
Q Consensus 907 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 986 (1293)
|.|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.+||.++..++...+|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 3589999999996544579999999999999999999999999999999999998 789999999999999999999999
Q ss_pred eEEccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000774 987 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1066 (1293)
Q Consensus 987 ~~v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 1066 (1293)
+|+||+|.+|++|+++|++++...++++++++++.+++.+++.++|.++++.+++.|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987766678899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChHHHHHHhhc
Q 000774 1067 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1146 (1293)
Q Consensus 1067 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~l~~~~~ 1146 (1293)
|||||||++||+.+.+.+++.|++...++|||+||||++++..||||++|++|++++.|+|+++++. .+.|++++...+
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhhcc
Confidence 9999999999999999999999988778999999999999988999999999999999999999984 467788877654
Q ss_pred c
Q 000774 1147 A 1147 (1293)
Q Consensus 1147 ~ 1147 (1293)
.
T Consensus 239 ~ 239 (275)
T cd03289 239 R 239 (275)
T ss_pred h
Confidence 3
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-49 Score=404.15 Aligned_cols=219 Identities=28% Similarity=0.481 Sum_probs=187.9
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecC-CCChHHHhhhc
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA-KFGLMDLRKIL 986 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~-~~~~~~~r~~i 986 (1293)
.|+++||+++|+.. .+|+|||++|.+||+++|+||||||||||+++|.|+-+|++|+|.+||.++. ..+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 38999999999864 6999999999999999999999999999999999999999999999998764 33678899999
Q ss_pred eEEccccccccc-cHhhhcCCCC----CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 000774 987 GIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 1061 (1293)
Q Consensus 987 ~~v~Q~~~lf~~-ti~~nl~~~~----~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 1061 (1293)
|+|+|+..||.. |+.||+.... ..+.++.++ .+.+++++ .|+....+..+.+||||||||+||||||.
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~-----~A~~lL~~--VGL~~ka~~yP~qLSGGQqQRVAIARALa 152 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEARE-----KALELLEK--VGLADKADAYPAQLSGGQQQRVAIARALA 152 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHH-----HHHHHHHH--cCchhhhhhCccccCcHHHHHHHHHHHHc
Confidence 999999999987 9999996432 222222211 12233333 25555555566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCC
Q 000774 1062 RRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1135 (1293)
Q Consensus 1062 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1135 (1293)
.+|+++|+|||||+|||+...++.+.++++.. |.|+|+|||++.++.+ ||||+.|++|+|++.|+|+++..++.
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 99999999999999999999999999999774 7899999999999988 99999999999999999999987653
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-47 Score=396.30 Aligned_cols=222 Identities=31% Similarity=0.522 Sum_probs=192.2
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+|+|||++|++. .+++|+||+|++||.+.++|||||||||++|+|.|+++|++|+|+++|.+++++++..+|++|||
T Consensus 2 I~~~nvsk~y~~~--~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGNK--KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCCc--eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 7999999999854 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eccccccccc-cHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcc--hhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 989 IPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD--AQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~--~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
|-|...||.. ||.+|+...+ .++.+++.+ ...+.+... ||+ ....+.++.|||||+||+.+||||..
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~-----r~~ELl~lv--gL~p~~~~~RyP~eLSGGQQQRVGv~RALAa 152 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKK-----RADELLDLV--GLDPSEYADRYPHELSGGQQQRVGVARALAA 152 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHH-----HHHHHHHHh--CCCHHHHhhcCchhcCcchhhHHHHHHHHhc
Confidence 9999999976 9999997543 233333322 122333322 333 24555667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCCChHH
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1139 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1139 (1293)
+|+|||+|||+++|||-++..+++-+.++.+ ++|+|+||||++++.. +|||.+|++|+++.+++|++++.++...|-
T Consensus 153 dP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV 232 (309)
T COG1125 153 DPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFV 232 (309)
T ss_pred CCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHH
Confidence 9999999999999999999999999988654 7999999999999766 999999999999999999999987755444
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-47 Score=409.62 Aligned_cols=216 Identities=31% Similarity=0.453 Sum_probs=186.9
Q ss_pred EEEEEEEEEecCC---CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChH---HH
Q 000774 909 IKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DL 982 (1293)
Q Consensus 909 i~~~~v~~~y~~~---~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~ 982 (1293)
|++++|++.|+.. ...+|+||||+|++||++||+|+||||||||++++.++-+|++|+|.+||.|+..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999752 24699999999999999999999999999999999999999999999999998877754 56
Q ss_pred hhhceEEcccccccc-ccHhhhcCCCC---CCCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 000774 983 RKILGIIPQSPVLFS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1054 (1293)
Q Consensus 983 r~~i~~v~Q~~~lf~-~ti~~nl~~~~---~~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 1054 (1293)
|++||+++|++.|++ .||.+|+.+-- ..+. +++.+.|+.+| +..+.+..+.+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVg-----------L~dk~~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVG-----------LSDKADRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcC-----------ChhhhccCchhcCcchhhHH
Confidence 778999999999997 59999997421 2222 23444444444 44445555678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1055 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1055 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
+|||||..+|+|||+|||||+|||+|.+.|.+.|++..+ |-||++|||.|+.+++ ||||.||++|+++|.|+..|+.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999998653 7899999999999998 9999999999999999999998
Q ss_pred hcCC
Q 000774 1132 SNEG 1135 (1293)
Q Consensus 1132 ~~~~ 1135 (1293)
.++.
T Consensus 231 ~~Pk 234 (339)
T COG1135 231 ANPK 234 (339)
T ss_pred cCcc
Confidence 7654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=383.95 Aligned_cols=203 Identities=32% Similarity=0.500 Sum_probs=180.4
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 350 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~~~ 350 (1293)
.|+++|++++|+ +..+|+|||++|++||+++|+|||||||||||++|.|+.+|++|.... +|.+
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 589999999996 468999999999999999999999999999999999999999984321 3457
Q ss_pred EEEEcCCcccc-CccHHHHHccCC----CCC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000774 351 VAYVPQVSWIF-NATVRDNILFGS----AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 421 (1293)
Q Consensus 351 i~~v~Q~~~l~-~~Tv~eni~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRial 421 (1293)
+|+|+|+..|| ..||.|||.++. ..+ +++..+.++..++.+..+..|. +|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHH
Confidence 99999999998 789999999873 122 2334556888999988888884 899999999999
Q ss_pred HHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhhcc
Q 000774 422 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 500 (1293)
Q Consensus 422 Aral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 500 (1293)
||||+.+|+++++|||||+|||+....+.+-+......|.|.|+|||.+.|.+. ||||+.|++|+|+++|+++++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999998777777889999999999999987 6999999999999999999998764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=421.37 Aligned_cols=226 Identities=23% Similarity=0.366 Sum_probs=197.4
Q ss_pred CCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC-----CCcceEEECCeecC-
Q 000774 902 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIA- 975 (1293)
Q Consensus 902 ~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~- 975 (1293)
.||..+.|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.
T Consensus 74 ~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 74 DFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 478888999999999997544579999999999999999999999999999999999997 57999999999997
Q ss_pred -CCChHHHhhhceEEccccccccccHhhhcCCCC---CCCHHHH-----HHHHHHhhHHHHHHHccCCcchhhhcCCCCC
Q 000774 976 -KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDADL-----WEALERAHLKDAIRRNSLGLDAQVSEAGENF 1046 (1293)
Q Consensus 976 -~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~~~~~~-----~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~L 1046 (1293)
..+...+|+.++||||+|.+|++|+++|+.+.. ..++++. .++++.+++ +.++++.+++.+.+|
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~L 226 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNAL 226 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccC
Confidence 344567889999999999999999999998432 2333333 333444433 345667788999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1047 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1047 SgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
|||||||++||||++++|+||||||||++||+.+.+.+++.|++..+++|+|+|||+++++.. ||||++|++|++++.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999998888999999999999988 9999999999999999
Q ss_pred ChhhhhhcC
Q 000774 1126 TPEELLSNE 1134 (1293)
Q Consensus 1126 ~~~el~~~~ 1134 (1293)
+++++.+.+
T Consensus 307 ~~~~l~~~~ 315 (329)
T PRK14257 307 ETKTIFIHP 315 (329)
T ss_pred CHHHHhcCC
Confidence 999998644
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=374.22 Aligned_cols=218 Identities=27% Similarity=0.452 Sum_probs=196.9
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCc-----ceEEECCeecCC--CChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-----GRILIDGFDIAK--FGLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~-----G~I~i~g~~i~~--~~~~ 980 (1293)
.++++|+++.|+.. .+|+|||++|++++++|++|||||||||+|+++.++.+..+ |+|.++|.+|.+ +++-
T Consensus 7 ~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 7 AIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred eeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 48999999999854 69999999999999999999999999999999999998875 999999999976 4688
Q ss_pred HHhhhceEEccccccccccHhhhcCCCCC-------CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1053 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~-------~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 1053 (1293)
.+|++||+|+|.|.-|..||.||+.+... .-++.+.++|+.+.+++.+.. .+.+.+..|||||+||
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQR 157 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQR 157 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHHH
Confidence 99999999999999999999999975421 124557888999999987653 3455677899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1054 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1054 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
|||||||.-+|+|||||||||+|||.+...|++.|.++.++-|||+|||.|.-+.+ +|++..|..|+++|+|..+++..
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 99999999999999999999999999999999999999889999999999999877 89999999999999999999986
Q ss_pred cC
Q 000774 1133 NE 1134 (1293)
Q Consensus 1133 ~~ 1134 (1293)
++
T Consensus 238 ~P 239 (253)
T COG1117 238 NP 239 (253)
T ss_pred Cc
Confidence 54
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=400.29 Aligned_cols=238 Identities=50% Similarity=0.820 Sum_probs=216.3
Q ss_pred CCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhh
Q 000774 905 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984 (1293)
Q Consensus 905 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 984 (1293)
..+.|+++|++++|++...++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 35679999999999753346999999999999999999999999999999999999999999999999998888888899
Q ss_pred hceEEccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 985 ILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 985 ~i~~v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
.|+|+||++.+|++|+++|+.+......+.+.++++..++.+++..+|.|+++.+++.+.+||||||||++|||||+++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999764333455677888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChHHHHH
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1142 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~l~ 1142 (1293)
++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||||++|++|++++.|+++++.+..++.|..++
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 999999999999999999999999987678999999999999988999999999999999999999876555555444
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=391.44 Aligned_cols=211 Identities=34% Similarity=0.541 Sum_probs=187.2
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|++++|++. ++|+|+||+|++||+++|+||||||||||+|+|+|+++|.+|+|.+||.++.+++..++.+++||
T Consensus 3 L~~~~ls~~y~~~--~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 3 LEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eEEEEEEEEECCe--eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 7999999999854 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eccccc-cccccHhhhcCC--------CCCCCH---HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 000774 989 IPQSPV-LFSGTVRFNLDP--------FSEHSD---ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 1056 (1293)
Q Consensus 989 v~Q~~~-lf~~ti~~nl~~--------~~~~~~---~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 1056 (1293)
|||.+. -|..||+|-+.. +...++ +.+.++++..++.++..+ ....||||||||+.|
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv~i 149 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRVLI 149 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHHHH
Confidence 999975 455599986532 222222 246777888777766544 346799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1057 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1057 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
||||.++|+||+|||||++||....-.+++.++++. ++.|+|+|.||++.+.+ ||++++|++|+++..|+|+|.+.
T Consensus 150 ArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 150 ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 999999999999999999999999999999999976 36999999999998766 99999999999999999999985
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=374.03 Aligned_cols=215 Identities=30% Similarity=0.504 Sum_probs=187.8
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChH---HHhh
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRK 984 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~ 984 (1293)
.|++++|+++|+++ .+++||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+.+++.. .+|+
T Consensus 8 ~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 8 LIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred eEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 59999999999765 699999999999999999999999999999999999999999999999999988865 4688
Q ss_pred hceEEccccccccc-cHhhhcCCC-C---CCCHHHHHH----HHHHhhHHHHHHHccCCcchh-hhcCCCCCChhHHHHH
Q 000774 985 ILGIIPQSPVLFSG-TVRFNLDPF-S---EHSDADLWE----ALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQRQLL 1054 (1293)
Q Consensus 985 ~i~~v~Q~~~lf~~-ti~~nl~~~-~---~~~~~~~~~----~l~~~~l~~~i~~lp~gl~~~-~~~~~~~LSgGqkqrl 1054 (1293)
++|+++|+..||+. ||+||+.+. . ...+..+++ .++.+| |... ....+..||||+++|+
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VG-----------L~~~~~~~~PsELSGGM~KRv 154 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVG-----------LRGAAADLYPSELSGGMRKRV 154 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcC-----------CChhhhhhCchhhcchHHHHH
Confidence 99999999999976 999999742 2 334444433 233344 4333 3445678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1055 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1055 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
+||||+.-+|+||++||||+||||-+...+.+.|+++.+ +.|+++||||++++.. ||||+++.+|+|+..|+++|+.
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999998764 7899999999999887 9999999999999999999999
Q ss_pred hcCC
Q 000774 1132 SNEG 1135 (1293)
Q Consensus 1132 ~~~~ 1135 (1293)
+..+
T Consensus 235 ~sd~ 238 (263)
T COG1127 235 ASDD 238 (263)
T ss_pred hCCC
Confidence 7544
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-44 Score=396.47 Aligned_cols=232 Identities=37% Similarity=0.603 Sum_probs=208.8
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++|++++|+....++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 47899999996433469999999999999999999999999999999999999999999999999988777788889999
Q ss_pred EccccccccccHhhhcCCCCC-CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000774 989 IPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1067 (1293)
Q Consensus 989 v~Q~~~lf~~ti~~nl~~~~~-~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 1067 (1293)
+||++.+|+.|+++|+.+... ....++.+.++..++.+++..+|.++++..+..+.+||||||||++|||||+.+|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 999999998899999976432 3345566777778889999999999999888999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhcCCChHHHH
Q 000774 1068 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1141 (1293)
Q Consensus 1068 lLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~l 1141 (1293)
||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++++++++ .+.|..+
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 233 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYL 233 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHH
Confidence 999999999999999999999998778999999999999977999999999999999999999865 3445443
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=389.29 Aligned_cols=219 Identities=68% Similarity=1.064 Sum_probs=204.9
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++|++++|++...++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 58999999999754346999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000774 988 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1067 (1293)
Q Consensus 988 ~v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 1067 (1293)
|+||++.+|+.|+++|+.++.....+++.++++..++.+++.++|.|+++..++.+.+||||||||++|||||+.+|++|
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999876555667788889999999999999999999998899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecC
Q 000774 1068 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1126 (1293)
Q Consensus 1068 lLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~ 1126 (1293)
||||||++||+.+++.+.+.|++..++.|+|++||+++.+..||++++|++|++++.|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999877799999999999998899999999999998876
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=383.59 Aligned_cols=199 Identities=22% Similarity=0.324 Sum_probs=154.7
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.+-+.||+|.|++. .|.+++++|-|.--.+|+||||||.|||||+++|.|-++|+.|+.+-+ .|-+||
T Consensus 586 vLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIG 653 (807)
T ss_pred eeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeee
Confidence 37899999999765 479999999999999999999999999999999999999999987644 355799
Q ss_pred EEccccc--cc-cccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhh-cCCCCCChhHHHHHHHHHHhccC
Q 000774 988 IIPQSPV--LF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS-EAGENFSVGQRQLLSLSRALLRR 1063 (1293)
Q Consensus 988 ~v~Q~~~--lf-~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~-~~~~~LSgGqkqrl~lArall~~ 1063 (1293)
+.-|+.. |- ..|-.|.|.-.-...-++.++.|...|+. ++.. -....||||||-|++||-.-++.
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~-----------sHAHTikikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLA-----------SHAHTIKIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhh-----------hccceEeeeecCCcchHHHHHHHHhcCC
Confidence 9999863 22 23666665311122234555566554443 3222 13457999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccC-EEEEEeCCeEeee-cChhhhh
Q 000774 1064 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD-RILLLDSGRVLEY-DTPEELL 1131 (1293)
Q Consensus 1064 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d-~i~vl~~G~i~~~-g~~~el~ 1131 (1293)
|+||||||||++||.++...+-++|.+ .++.||+||||-..+...| ..||+++-.|-+. |..+++.
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIne--y~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYk 790 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINE--YNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYK 790 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHh--ccCcEEEEecccceeeecCceEEEEccCChhhccccHHHHH
Confidence 999999999999999999999999998 5678999999999887632 4566766555543 6666654
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=381.22 Aligned_cols=208 Identities=29% Similarity=0.448 Sum_probs=181.3
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.|+++|++++|+.. ++|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.+.|.+++.... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 48999999999865 59999999999999999999999999999999999999999999999988765332 56899
Q ss_pred EEccccc---cccccHhhhcCCCC-----------CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 000774 988 IIPQSPV---LFSGTVRFNLDPFS-----------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1053 (1293)
Q Consensus 988 ~v~Q~~~---lf~~ti~~nl~~~~-----------~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 1053 (1293)
||||... -|..||+|-+.... ..+.+.+.++|+++++.++..+ ....|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-----------~i~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-----------QIGELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-----------cccccCcHHHHH
Confidence 9999763 46779999764321 1124678889999888776543 345799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1054 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1054 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
+.|||||+.+|++|+|||||+|+|+.++..+.+.|+++.+ |+||++||||++.+.. ||+|+.|++ ++...|++++..
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhcc
Confidence 9999999999999999999999999999999999999875 7999999999999877 999999955 899999999998
Q ss_pred h
Q 000774 1132 S 1132 (1293)
Q Consensus 1132 ~ 1132 (1293)
+
T Consensus 227 ~ 227 (254)
T COG1121 227 T 227 (254)
T ss_pred C
Confidence 5
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=429.38 Aligned_cols=199 Identities=28% Similarity=0.385 Sum_probs=164.6
Q ss_pred CCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC--CcceEEECCeecCCCChHHHhhhceEEcccccccc-
Q 000774 921 ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS- 997 (1293)
Q Consensus 921 ~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 997 (1293)
+.+..|+||+=-++||-.+||+|+||||||||+++|+|-..- .+|+|+++|.+..+ +..++.+|||.|++.-..
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 345799999999999999999999999999999999987543 37999999998754 678999999999996554
Q ss_pred ccHhhhcCCC------CCCCHHH----HHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC-CE
Q 000774 998 GTVRFNLDPF------SEHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS-KI 1066 (1293)
Q Consensus 998 ~ti~~nl~~~------~~~~~~~----~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p-~i 1066 (1293)
-||||-|.+- .+.++++ +.++++..++.++- |..|+..|..||..||+||.||--|+.|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 4999988532 1223322 44455555444432 45578888999999999999999999999 88
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcch--hhccCEEEEEe-CCeEeeecChhh
Q 000774 1067 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILLLD-SGRVLEYDTPEE 1129 (1293)
Q Consensus 1067 LlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~--~~~~d~i~vl~-~G~i~~~g~~~e 1129 (1293)
|+|||||||||.++...|.+.++++. .|+||+.+=|.++. .+..|+++.|+ .|+.+..|+..+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 89999999999999999999999976 58999999999986 46699999998 789999988654
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=398.40 Aligned_cols=217 Identities=26% Similarity=0.417 Sum_probs=192.3
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.|+++||+++|++. .+++|+||+|+.||.++|+|||||||||||++|+|+.+|++|+|.|||.++++++|.+ +.||
T Consensus 3 ~i~l~~v~K~yg~~--~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 48999999999864 2999999999999999999999999999999999999999999999999999998865 7899
Q ss_pred EEccccccccc-cHhhhcCCCCCC-------CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1059 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~~~-------~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 1059 (1293)
+|+|+..||.. ||++|+.+.-+. .+.++.++++..++.+++++.| .+||||||||+|||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence 99999999977 999999764321 2455777777777766666654 6799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCCC
Q 000774 1060 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1136 (1293)
Q Consensus 1060 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1136 (1293)
|+++|+++|||||.|+||+..+..+...|+++.+ +.|+|.||||..++.. +|||.||++|+|.+.|+|.|+..++.+
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999999999999988654 6899999999999877 999999999999999999999977654
Q ss_pred hHH
Q 000774 1137 SFS 1139 (1293)
Q Consensus 1137 ~~~ 1139 (1293)
.|-
T Consensus 228 ~fV 230 (338)
T COG3839 228 LFV 230 (338)
T ss_pred hhh
Confidence 443
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=387.58 Aligned_cols=225 Identities=38% Similarity=0.648 Sum_probs=205.3
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++|++++|++...++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999997543369999999999999999999999999999999999999999999999999887777788889999
Q ss_pred EccccccccccHhhhcCCCCC-CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000774 989 IPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1067 (1293)
Q Consensus 989 v~Q~~~lf~~ti~~nl~~~~~-~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 1067 (1293)
+||++.+|..|+++|+.+... ....++.+.++..++.++++.+|.++++..+..+.+||||||||++|||||+.+|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998999999986533 2445566777778889999999999998888889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhc
Q 000774 1068 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1068 lLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
||||||++||+.+.+.+.+.|++..++.|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 999999999999999999999998778999999999999988999999999999999999998754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=386.18 Aligned_cols=225 Identities=43% Similarity=0.700 Sum_probs=206.5
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++|++++|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 2 ~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 58999999999642 35999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEccccccccccHhhhcCCCCC-CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000774 988 IIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1066 (1293)
Q Consensus 988 ~v~Q~~~lf~~ti~~nl~~~~~-~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 1066 (1293)
|+||++.+|..|+++|+.++.. ....++.++++..++.++++++|.|+++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999998899999976533 345667778888899999999999999999888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhc
Q 000774 1067 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1067 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+..||++++|++|++++.|+++++.++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 9999999999999999999999998678999999999999878999999999999999998888754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=368.06 Aligned_cols=223 Identities=30% Similarity=0.462 Sum_probs=185.2
Q ss_pred cEEEEEEEEEecCCC--CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCCh-HHHhh
Q 000774 908 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRK 984 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~ 984 (1293)
.++++|+++.|+.+. .++|+||||+|.+||++||+|+||||||||.++|+|+.+|++|+|.++|.++....+ ...++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 389999999997642 149999999999999999999999999999999999999999999999987765432 35677
Q ss_pred hceEEcccccc-cc--ccHhhhcC-CCCC----CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 000774 985 ILGIIPQSPVL-FS--GTVRFNLD-PFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 1056 (1293)
Q Consensus 985 ~i~~v~Q~~~l-f~--~ti~~nl~-~~~~----~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 1056 (1293)
.|.+|+|||.- ++ .||++-|. +... ....+++++++.+++.+ ....+.+..|||||+||+||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~----------~~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPP----------SFLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCH----------HHHhcCchhcChhHHHHHHH
Confidence 79999999962 32 27777663 2221 12345777777777643 22344556899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1057 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1057 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
||||.-+|++||||||||+||+-....|++.|.+..+ +-|.|+||||+..+.. ||||+||++|+++|.+..+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999999998765 4699999999999998 999999999999999999999876
Q ss_pred CCChHHH
Q 000774 1134 EGSSFSK 1140 (1293)
Q Consensus 1134 ~~~~~~~ 1140 (1293)
....|.+
T Consensus 233 ~~h~ytr 239 (252)
T COG1124 233 PSHPYTR 239 (252)
T ss_pred CccHHHH
Confidence 4444543
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=402.12 Aligned_cols=219 Identities=27% Similarity=0.437 Sum_probs=185.9
Q ss_pred EEEEEEEEEecCC--CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH---Hh
Q 000774 909 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 983 (1293)
Q Consensus 909 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 983 (1293)
|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++... .|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 236999999999999999999999999999999999999999999999999998877654 47
Q ss_pred hhceEEcccccccc-ccHhhhcCCCC---CCCHH----HHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 000774 984 KILGIIPQSPVLFS-GTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1055 (1293)
Q Consensus 984 ~~i~~v~Q~~~lf~-~ti~~nl~~~~---~~~~~----~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 1055 (1293)
++|||+||++.+|. .|+++|+.+.. ..+.. ++.++++.+ |+....+..+.+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~v-----------gL~~~~~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALV-----------GLGDKHDSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHHH
Confidence 78999999999996 59999996421 12222 233334443 4444445566789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1056 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
|||||+.+|++||||||||+||+.+.+.+++.|+++.+ +.|||+|||+++.+.. ||||++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999999754 7899999999999977 99999999999999999999986
Q ss_pred cCCChH
Q 000774 1133 NEGSSF 1138 (1293)
Q Consensus 1133 ~~~~~~ 1138 (1293)
.+...+
T Consensus 231 ~p~~~~ 236 (343)
T TIGR02314 231 HPKTPL 236 (343)
T ss_pred CCCcHH
Confidence 544333
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=352.62 Aligned_cols=206 Identities=28% Similarity=0.429 Sum_probs=184.6
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH---Hhhh
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRKI 985 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r~~ 985 (1293)
|+|+||+++|+.. +++|+||||+|++||.+-|+||||||||||+|+|++..+|++|+|.++|.|+.++..++ +|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7999999999876 67999999999999999999999999999999999999999999999999998877554 7999
Q ss_pred ceEEccccccccc-cHhhhcCCCC-------CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 000774 986 LGIIPQSPVLFSG-TVRFNLDPFS-------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1057 (1293)
Q Consensus 986 i~~v~Q~~~lf~~-ti~~nl~~~~-------~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 1057 (1293)
||+|+||.-|... ||.||+.+-- ....+++.++|+.+|+.+-...+| .+||||||||++||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHHH
Confidence 9999999988765 9999986421 112456788888888888777776 47999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecC
Q 000774 1058 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1126 (1293)
Q Consensus 1058 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 1126 (1293)
||++.+|++||-||||-+|||++...|++.+.+.. .|.||++.|||.+.+.. --|++.+++|+++....
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999865 48999999999999988 68999999999987654
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=377.70 Aligned_cols=206 Identities=27% Similarity=0.434 Sum_probs=179.1
Q ss_pred cEEEEeeEEEcCCCC--CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------
Q 000774 284 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 346 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~--~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~--------------- 346 (1293)
.|++++|++.|+... ...+|+||||+|++||+.||+|+||||||||++++.++..|++|....
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 389999999997521 246899999999999999999999999999999999999999995432
Q ss_pred ecCcEEEEcCCcccc-CccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHH
Q 000774 347 IRGTVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 418 (1293)
Q Consensus 347 ~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqR 418 (1293)
.|++||+++|++.|+ +.||++||+|.-. .+ .+++.+.++.++|.+..+..| .+||||||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQR 149 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQR 149 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhH
Confidence 356799999999998 5899999998632 22 245667788888888777776 5999999999
Q ss_pred HHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHH
Q 000774 419 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 496 (1293)
Q Consensus 419 ialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 496 (1293)
|+|||||+.+|+||+.|||||+|||++.+.|.+.+.+.. .-|-|+++|||.|+.++. |||+.+|++|+++++|+..++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999999999998665543 348999999999999986 899999999999999999999
Q ss_pred hhcc
Q 000774 497 SNNG 500 (1293)
Q Consensus 497 ~~~~ 500 (1293)
..++
T Consensus 230 F~~P 233 (339)
T COG1135 230 FANP 233 (339)
T ss_pred hcCc
Confidence 8764
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=396.89 Aligned_cols=217 Identities=28% Similarity=0.436 Sum_probs=192.0
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++||+++|++ ..+++|+||+|++||.++++|||||||||+|++|+|+..|++|+|.++|+|+..++++ ++.||
T Consensus 5 ~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig 80 (352)
T COG3842 5 ALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIG 80 (352)
T ss_pred eEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccc
Confidence 4999999999984 3799999999999999999999999999999999999999999999999999998875 57899
Q ss_pred EEccccccccc-cHhhhcCCCCC----CCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFSE----HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1058 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~~----~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 1058 (1293)
+|+|+..||.. ||++|+.|.-. ..+ +++.++++.+++.++..+.| .+||||||||+||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHH
Confidence 99999999987 99999976432 222 35677777777777665544 679999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCC
Q 000774 1059 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1135 (1293)
Q Consensus 1059 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1135 (1293)
||..+|++||||||.|+||.+-+..++.-|++..+ |.|.|+||||-++... +|||+||++|+|...|+|+|+..++.
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~ 229 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPA 229 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcc
Confidence 99999999999999999999999999998888653 7999999999999766 99999999999999999999997765
Q ss_pred ChHH
Q 000774 1136 SSFS 1139 (1293)
Q Consensus 1136 ~~~~ 1139 (1293)
..|-
T Consensus 230 ~~fV 233 (352)
T COG3842 230 TRFV 233 (352)
T ss_pred hHHH
Confidence 4443
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-43 Score=379.66 Aligned_cols=214 Identities=29% Similarity=0.496 Sum_probs=190.5
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecC-CCChHHHhhhc
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA-KFGLMDLRKIL 986 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~-~~~~~~~r~~i 986 (1293)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.++|.++. ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 38999999999876 57999999999999999999999999999999999999999999999999988 47788999999
Q ss_pred eEEcccc--ccccccHhhhcCCCCC---CCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 000774 987 GIIPQSP--VLFSGTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1057 (1293)
Q Consensus 987 ~~v~Q~~--~lf~~ti~~nl~~~~~---~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 1057 (1293)
|||+|+| .+|..||.+.+.+... ... +++.++++.+++.++.+ ....+||||||||++||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-----------r~p~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-----------RPPFNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-----------CCccccCCcceeeHHhh
Confidence 9999999 6899999999876542 233 33556666666655533 44568999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1058 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1058 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
.+|..+|++|||||||++||+...+.+.+.++++.. ++|+|++|||++.+.. |||+++|++|+++.+|+|+++.++
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999999864 4799999999999988 999999999999999999998864
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=381.93 Aligned_cols=224 Identities=43% Similarity=0.717 Sum_probs=205.1
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|++++|++. ..+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999643 359999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EccccccccccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000774 989 IPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1067 (1293)
Q Consensus 989 v~Q~~~lf~~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 1067 (1293)
+||++.+|+.|+++|+.+.. ...+.++.+.++.+++.+.+..+|.++++.+...+.+||||||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997543 23455677778888899999999999999999889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhc
Q 000774 1068 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1068 lLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
||||||++||+.+.+.+.+.|.+..++.|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~ 225 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK 225 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999987668899999999999988999999999999999999988753
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=401.00 Aligned_cols=265 Identities=20% Similarity=0.285 Sum_probs=209.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcEEEEeeEEEcCCCCC
Q 000774 220 GDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAE 299 (1293)
Q Consensus 220 ~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~ 299 (1293)
+.+++..+|+.++++..+..|+..++..... ..|+..++..++..........+....|+++|++++|+. ..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~-~~ 94 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMN-RT 94 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccCCCCcCceEEEEeeEEEecC-CC
Confidence 4567888888888888777776665544322 568888876543211000111123357999999999963 34
Q ss_pred CCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCCce--------------eecCcEEEEcCCccc
Q 000774 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASA--------------VIRGTVAYVPQVSWI 360 (1293)
Q Consensus 300 ~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~-----~~~g~~~--------------~~~~~i~~v~Q~~~l 360 (1293)
+++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|... .+++.++||||+|++
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 679999999999999999999999999999999999986 4577421 235679999999999
Q ss_pred cCccHHHHHccCCC---CCHH-----HHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEE
Q 000774 361 FNATVRDNILFGSA---FEPA-----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 432 (1293)
Q Consensus 361 ~~~Tv~eni~~g~~---~~~~-----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~il 432 (1293)
|++||+|||.|+.. .+++ .+.++++.+++.+++ .+.+++++.+||||||||++|||||+++|+||
T Consensus 175 ~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSgGqkqRl~LARAl~~~p~Il 247 (329)
T PRK14257 175 FEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSGGQQQRLCIARAIALEPEVL 247 (329)
T ss_pred CCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999998642 2222 245567777764433 35688999999999999999999999999999
Q ss_pred EEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhhcc
Q 000774 433 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 500 (1293)
Q Consensus 433 lLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 500 (1293)
||||||++||+.+.+++.+. ++...+++|+|+|||+++++.. ||||++|++|++++.|+++++.+..
T Consensus 248 LLDEPts~LD~~~~~~i~~~-i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 248 LMDEPTSALDPIATAKIEEL-ILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred EEeCCcccCCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 99999999999999998764 4555567999999999999887 9999999999999999999987653
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=387.79 Aligned_cols=225 Identities=22% Similarity=0.366 Sum_probs=201.0
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 351 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i 351 (1293)
.|+++|++++|+. +++++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|.... +++.|
T Consensus 2 ~i~~~nls~~~~~-~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTE-GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCC-CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 4899999999963 24679999999999999999999999999999999999997 6673211 23469
Q ss_pred EEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCE
Q 000774 352 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 431 (1293)
Q Consensus 352 ~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~i 431 (1293)
+|+||++.+|++||++|+......++++++++++.+++.+.++.+|+++++.++++|.+||||||||++|||||+++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999964334567788899999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHhhccHHHHHHHHHhc
Q 000774 432 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAG 511 (1293)
Q Consensus 432 llLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 511 (1293)
+||||||++||+.+.+.+.+.+.. ..+++|+|+||||++++..||||++|++|++++.|+++++.++.+.|++++...+
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~-~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQ-AFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHH-hcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhcc
Confidence 999999999999999988876554 4468999999999999989999999999999999999999998888888877654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=378.45 Aligned_cols=218 Identities=37% Similarity=0.596 Sum_probs=197.4
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++|+++.|+....++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++...++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 48999999999653246999999999999999999999999999999999999999999999999988777777788999
Q ss_pred EEccccccccccHhhhcCCCCC-CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000774 988 IIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1066 (1293)
Q Consensus 988 ~v~Q~~~lf~~ti~~nl~~~~~-~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 1066 (1293)
|+||++.+|..|+.+|+.+... ....++.+.++..++.+.+..+|.++++.+.+...+||||||||++||||++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988899999975432 244567778888899999999999999988888889999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeec
Q 000774 1067 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1067 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g 1125 (1293)
|||||||++||+.+.+.+++.|++...++|||++||+++.+..||++++|++|++++.|
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999976668999999999988669999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=360.31 Aligned_cols=212 Identities=28% Similarity=0.414 Sum_probs=183.6
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCC---hHHHhh
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRK 984 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~---~~~~r~ 984 (1293)
.|+++||+++|+++ ..+|+||||+|++||.|||+||||||||||+++|.|+.+|++|+|.++|.++...+ .+++|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 38999999999744 47999999999999999999999999999999999999999999999999988877 556688
Q ss_pred hceEEccccccccc-cHhhhcCCC------------CCCCHHH---HHHHHHHhhHHHHHHHccCCcchhhhcCCCCCCh
Q 000774 985 ILGIIPQSPVLFSG-TVRFNLDPF------------SEHSDAD---LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 1048 (1293)
Q Consensus 985 ~i~~v~Q~~~lf~~-ti~~nl~~~------------~~~~~~~---~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSg 1048 (1293)
+|||++|++.|-+. |+.+|+..+ +-.+.++ ..++|+++++ ......+.++|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi-----------~~~A~qra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGI-----------LDKAYQRASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCc-----------HHHHHHHhccCCc
Confidence 89999999999866 999997421 2233333 3444444444 3444456678999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1049 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1049 Gqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
||+||++|||||+.+|+|+|-|||+++|||.+.+.+++.|++.. .|.|+|+.-|+++.+.+ ||||+-|++|+|+.+|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999999865 47999999999999877 9999999999999999
Q ss_pred Chhhhh
Q 000774 1126 TPEELL 1131 (1293)
Q Consensus 1126 ~~~el~ 1131 (1293)
+++|+-
T Consensus 231 ~~~el~ 236 (258)
T COG3638 231 PASELT 236 (258)
T ss_pred Chhhhh
Confidence 999964
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=357.00 Aligned_cols=223 Identities=28% Similarity=0.451 Sum_probs=191.6
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHH-hhhc
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 986 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 986 (1293)
.+..+|+.++|+.. +++++|||+|++||+||++|||||||||.+.++.|+.+|++|+|.+||.|++.++.... |..|
T Consensus 4 ~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 4 TLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 48899999999765 79999999999999999999999999999999999999999999999999999998764 4459
Q ss_pred eEEccccccccc-cHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000774 987 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1065 (1293)
Q Consensus 987 ~~v~Q~~~lf~~-ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 1065 (1293)
||+||++.+|.+ ||++||...-+..+.+.+...++..+.+.++.+ .+.......+.+||||||+|+.|||||..+|+
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 999999999977 999999643332222223233344455555553 56666777889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcch-hhccCEEEEEeCCeEeeecChhhhhhcC
Q 000774 1066 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-IIDCDRILLLDSGRVLEYDTPEELLSNE 1134 (1293)
Q Consensus 1066 iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~-~~~~d~i~vl~~G~i~~~g~~~el~~~~ 1134 (1293)
.++||||++|+||-+...|++.++.+. +|-.|+++-|+..+ +.-|||.+++.+|+|...|+|+|+.+++
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 999999999999999999999998876 47889999999766 5559999999999999999999999754
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=381.64 Aligned_cols=225 Identities=41% Similarity=0.660 Sum_probs=203.0
Q ss_pred EEEEEEEEEecCC-CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 909 IKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 909 i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
++++|++++|++. ..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+....++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999642 236999999999999999999999999999999999999999999999999988777777788899
Q ss_pred EEccccccccccHhhhcCCCCC-CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000774 988 IIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1066 (1293)
Q Consensus 988 ~v~Q~~~lf~~ti~~nl~~~~~-~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 1066 (1293)
|+||++.+|+.|+++|+.+... ...+++.+.++..++.+++..+|.++++.......+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999998899999975432 234556667777788899999999999888888899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhc
Q 000774 1067 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1067 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999987667899999999999888999999999999999999888753
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=366.15 Aligned_cols=203 Identities=30% Similarity=0.423 Sum_probs=170.9
Q ss_pred EEEEEEEEEecCCC--CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH---H-
Q 000774 909 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L- 982 (1293)
Q Consensus 909 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~- 982 (1293)
++++||++.|..+. ..+|+++||+|++||.++|+||||||||||+++|.|+.+|++|.|.++|.|+..++... +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67899999996432 36899999999999999999999999999999999999999999999999999888543 3
Q ss_pred hhhceEEccccccccc-cHhhhcCC---CCCCCH----HHHHHHHHHhhHHHHHHHccCCcchhhh-cCCCCCChhHHHH
Q 000774 983 RKILGIIPQSPVLFSG-TVRFNLDP---FSEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVS-EAGENFSVGQRQL 1053 (1293)
Q Consensus 983 r~~i~~v~Q~~~lf~~-ti~~nl~~---~~~~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~-~~~~~LSgGqkqr 1053 (1293)
|++||||+|+..|.+. |++||+.. +..... +...+.++.. |+..... ..+.+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~l-----------gl~~~~~~~~p~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVL-----------GLEDRLLKKKPSELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhc-----------CChhhhccCCchhcCHHHHHH
Confidence 4569999999999876 99999863 222221 1222223332 4443333 5567899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhccCEEEEEeCCeEe
Q 000774 1054 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVL 1122 (1293)
Q Consensus 1054 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~ 1122 (1293)
+||||||+.+|+|++.||||.+||.++.+.+++.+++..+ ++|+|+||||......|||++.|.+|++.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 9999999999999999999999999999999999999753 68999999999999999999999999953
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=368.99 Aligned_cols=197 Identities=26% Similarity=0.366 Sum_probs=168.8
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.+++++|+++|+. ..+|+|+||+|++||.|+|+||||||||||+|+|+|+.+|++|+|.++|.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 3899999999986 3799999999999999999999999999999999999999999999999988443 35799
Q ss_pred EEccccccccc-cHhhhcCCCCCC-------CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1059 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~~~-------~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 1059 (1293)
||+|++.||.- ||++|+.+.-+. ..+.+.+.++.+|+.++- +..+.+||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~-----------~~~P~qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFE-----------DKYPHQLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchh-----------hcCccccChHHHHHHHHHHH
Confidence 99999999986 999999753221 123355555555555544 44557899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEEEeC--CeEe
Q 000774 1060 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVL 1122 (1293)
Q Consensus 1060 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~--G~i~ 1122 (1293)
|+.+|+||+||||+++||+.|+..+++.|.++. .++||++||||.+++-. +|||+||.+ |+|.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999999999998854 35999999999999766 999999998 5553
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-43 Score=353.29 Aligned_cols=216 Identities=26% Similarity=0.456 Sum_probs=187.5
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
+++.+++++|++. ..+++||||+++.||++||+|||||||||++++|.+++.|++|.|.+||.|..+ .|...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcce
Confidence 6889999999863 348999999999999999999999999999999999999999999999999987 56789999999
Q ss_pred Eccccccccc-cHhhhcCCCCCC---CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 989 IPQSPVLFSG-TVRFNLDPFSEH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~~~---~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
++-+..++.. |+||||.+|+.. .+.++. +.+.+...+ .++....+.+..+||-|+|||++|||||+++|
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~k-----ari~~l~k~--l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIK-----ARIAELSKR--LQLLEYLDRRVGEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHH-----HHHHHHHHH--hChHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Confidence 9988788865 999999876532 222221 223333333 35566666677789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
++++|||||||||..+.+.+++.+++... +++||+.||.|++++. ||||+++++|+++..|+++++.++
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999999999765 8999999999999997 999999999999999999999764
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=372.06 Aligned_cols=207 Identities=61% Similarity=0.992 Sum_probs=183.1
Q ss_pred CCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHH
Q 000774 903 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 982 (1293)
Q Consensus 903 ~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 982 (1293)
||..+.++++|++++|+....++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+....
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 56677899999999997533369999999999999999999999999999999999999999999999999988887788
Q ss_pred hhhceEEccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 983 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 983 r~~i~~v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
|+.|+|+||++.+|++|+++|+.++....++++.++++ +++.+..|||||+||++||||++.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 88999999999999999999997654333333333222 234567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecCh
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1127 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~ 1127 (1293)
+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999997678999999999999877999999999999988864
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=380.99 Aligned_cols=216 Identities=29% Similarity=0.457 Sum_probs=181.9
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCCh---HHHhhh
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLRKI 985 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~---~~~r~~ 985 (1293)
|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++ ..+|+.
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 4689999999643 69999999999999999999999999999999999999999999999999887664 456788
Q ss_pred ceEEccccccccc-cHhhhcCCCC----CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 986 LGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 986 i~~v~Q~~~lf~~-ti~~nl~~~~----~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
|+|+||++.+|.. |+++|+.+.. ..+..+..+ .+.+.++.+ |+.........+||||||||++|||||
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~al 151 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIRE-----IVLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARAL 151 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999999876 9999986431 112222111 122333332 444445556678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||||++|++|++++.|+++++...
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 999999999999999999999999999998753 7899999999999876 999999999999999999998753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=377.78 Aligned_cols=183 Identities=24% Similarity=0.359 Sum_probs=140.2
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++..+++++|++- .|+==.=+|..||++|++||||-||||++++|+|.++|++|. ..+ -+|+|
T Consensus 343 v~y~~~~k~~g~F---~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSy 405 (591)
T COG1245 343 VEYPDLKKTYGDF---KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSY 405 (591)
T ss_pred eecchheeecCce---EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEee
Confidence 4555566666421 222223345678999999999999999999999999999998 222 25888
Q ss_pred Eccccc-cccccHhhhcCCCCC--CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000774 989 IPQSPV-LFSGTVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1065 (1293)
Q Consensus 989 v~Q~~~-lf~~ti~~nl~~~~~--~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 1065 (1293)
=||--. -|++||++-|.-... ..+. .....+. .|..++.........|||||.|||++|-||.++++
T Consensus 406 KPQyI~~~~~gtV~~~l~~~~~~~~~~s---------~~~~ei~-~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reAD 475 (591)
T COG1245 406 KPQYISPDYDGTVEDLLRSAIRSAFGSS---------YFKTEIV-KPLNLEDLLERPVDELSGGELQRVAIAAALSREAD 475 (591)
T ss_pred cceeecCCCCCcHHHHHHHhhhhhcccc---------hhHHhhc-CccchHHHHhcccccCCchhHHHHHHHHHhccccC
Confidence 888653 478899986632110 1111 1111111 26777888888888999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEEEeC
Q 000774 1066 ILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS 1118 (1293)
Q Consensus 1066 iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~ 1118 (1293)
+.|||||++.||.+.+-.+-++|++.. .++|.++|-||+..+.. +||++|++.
T Consensus 476 lYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 476 LYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred EEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 999999999999999999999999865 46899999999999988 999999963
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=391.52 Aligned_cols=220 Identities=20% Similarity=0.375 Sum_probs=186.3
Q ss_pred ccEEEEEEEEEecCC---CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCC------
Q 000774 907 GSIKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF------ 977 (1293)
Q Consensus 907 g~i~~~~v~~~y~~~---~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~------ 977 (1293)
..|+++|++|+|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 358999999999642 13599999999999999999999999999999999999999999999999998653
Q ss_pred ----------ChHHHhhhceEEcccc--ccccccHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcc-hhhhc
Q 000774 978 ----------GLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLD-AQVSE 1041 (1293)
Q Consensus 978 ----------~~~~~r~~i~~v~Q~~--~lf~~ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~ 1041 (1293)
....+|++||||||+| .+|+.|+++|+.+... .+.++. .+ ...++++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~---~~--~~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEA---KK--LAKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHH---HH--HHHHHHHHc--CCChhHhcC
Confidence 3456788999999998 6888899999965321 122222 11 233455554 564 45677
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCC
Q 000774 1042 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSG 1119 (1293)
Q Consensus 1042 ~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G 1119 (1293)
.+.+||||||||++|||||+.+|+||||||||++||+.+++.+.+.|++.. +++|||+||||++++.. ||||++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 888999999999999999999999999999999999999999999998864 47899999999998755 9999999999
Q ss_pred eEeeecChhhhhhc
Q 000774 1120 RVLEYDTPEELLSN 1133 (1293)
Q Consensus 1120 ~i~~~g~~~el~~~ 1133 (1293)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998753
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=393.54 Aligned_cols=216 Identities=28% Similarity=0.445 Sum_probs=183.9
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++||+++|++. .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++||
T Consensus 7 ~i~i~~l~k~~~~~--~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig 83 (306)
T PRK13537 7 PIDFRNVEKRYGDK--LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVG 83 (306)
T ss_pred eEEEEeEEEEECCe--EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEE
Confidence 59999999999753 6999999999999999999999999999999999999999999999999997644 45788999
Q ss_pred EEcccccccc-ccHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000774 988 IIPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1063 (1293)
Q Consensus 988 ~v~Q~~~lf~-~ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 1063 (1293)
|+||++.+|. .|++||+.++.. ....+..+ .+.+.++. .++.........+||||||||++|||||+.+
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARA-----LVPPLLEF--AKLENKADAKVGELSGGMKRRLTLARALVND 156 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCCchHhcCchhhCCHHHHHHHHHHHHHhCC
Confidence 9999999886 599999975332 12222111 12233333 2444445556678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1064 SKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1064 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
|++|||||||+|||+.+++.+++.|+++.. ++|||++||++++++. ||||++|++|++++.|+++++.+.
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999754 7899999999999977 999999999999999999999754
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=370.63 Aligned_cols=215 Identities=27% Similarity=0.427 Sum_probs=184.1
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCe---ecCCCChHHHhhh
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF---DIAKFGLMDLRKI 985 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~---~i~~~~~~~~r~~ 985 (1293)
|+++|+++.|+.. ++++|||++|+.||.+|+.||||||||||+++|+|+..|++|+|.++|. |.++.+ .-.++
T Consensus 3 i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~R~ 78 (345)
T COG1118 3 IRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRDRK 78 (345)
T ss_pred eeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhhcc
Confidence 7889999999754 6999999999999999999999999999999999999999999999999 666533 34467
Q ss_pred ceEEccccccccc-cHhhhcCCCCCC---------CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 000774 986 LGIIPQSPVLFSG-TVRFNLDPFSEH---------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1055 (1293)
Q Consensus 986 i~~v~Q~~~lf~~-ti~~nl~~~~~~---------~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 1055 (1293)
||+|+|+..+|.. ||.+|+.|..+. .+.++.+.|+.+++..+-+ ..+.+||||||||+|
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-----------ryP~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-----------RYPAQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-----------cCchhcChHHHHHHH
Confidence 9999999999976 999999875421 1233444555555544433 445789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1056 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
|||||..+|++||||||.++||..-++.+.+.|++... +.|+++||||.+++.. ||||++|++|+|...|+|+|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 99999999999999999999999999999999998653 7999999999999876 99999999999999999999987
Q ss_pred cCCChH
Q 000774 1133 NEGSSF 1138 (1293)
Q Consensus 1133 ~~~~~~ 1138 (1293)
.+.+.|
T Consensus 228 ~P~s~f 233 (345)
T COG1118 228 HPASRF 233 (345)
T ss_pred CCCccc
Confidence 665544
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=378.64 Aligned_cols=209 Identities=32% Similarity=0.512 Sum_probs=177.6
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCC-----CCCcceEEECCeecCCCC--hHH
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV-----ELERGRILIDGFDIAKFG--LMD 981 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~-----~p~~G~I~i~g~~i~~~~--~~~ 981 (1293)
|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|.++...+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 4789999999753 6999999999999999999999999999999999999 999999999999987766 556
Q ss_pred HhhhceEEccccccccccHhhhcCCCCC---C-C----HHHHHHHHHHhhHHHHHHHccCCcchhhhcC--CCCCChhHH
Q 000774 982 LRKILGIIPQSPVLFSGTVRFNLDPFSE---H-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEA--GENFSVGQR 1051 (1293)
Q Consensus 982 ~r~~i~~v~Q~~~lf~~ti~~nl~~~~~---~-~----~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~--~~~LSgGqk 1051 (1293)
+|++++|+||++.+|..|+++|+.+... . . ++++.++++.. |++...... +.+||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~~LSgG~~ 147 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKA-----------ALWDEVKDRLHALGLSGGQQ 147 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHc-----------CCChHHhccCCcccCCHHHH
Confidence 7888999999999887799999964211 1 1 11233333333 343333333 478999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhh
Q 000774 1052 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130 (1293)
Q Consensus 1052 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1130 (1293)
||++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 9999999999999999999999999999999999999997655899999999999876 999999999999999988764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=338.97 Aligned_cols=209 Identities=29% Similarity=0.424 Sum_probs=186.5
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
+.+++|.++|+.. =-.++++|++||++||+||||||||||+++|+|+..|.+|+|.|+|+|....+|. ++-+++
T Consensus 2 l~L~~V~~~y~~~----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCcc----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 5688999999643 2357899999999999999999999999999999999999999999999887764 456999
Q ss_pred Eccccccccc-cHhhhcCCCC----CC---CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 989 IPQSPVLFSG-TVRFNLDPFS----EH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~----~~---~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
++|+..||.. ||++|+.+.- +. ..+.+..++.++|+.++..++| .+||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHH
Confidence 9999999987 9999996432 22 3456888999999999999988 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcC
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1134 (1293)
+++-+||+||||+|+|||.-+.++...+.+.. ++.|+++|||.++.+.. +||++++++|||.+.|..+++.+..
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 99999999999999999999999999998865 46899999999999887 9999999999999999999998643
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=396.62 Aligned_cols=214 Identities=21% Similarity=0.376 Sum_probs=183.5
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...++. ++.|||
T Consensus 4 l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 80 (356)
T PRK11650 4 LKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAM 80 (356)
T ss_pred EEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 8999999999422 3699999999999999999999999999999999999999999999999999887764 478999
Q ss_pred Eccccccccc-cHhhhcCCCCC---CCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 989 IPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~~---~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
|||++.+|.. ||++|+.+... .+. +++.++++..++ +...+..+.+||||||||++|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILEL-----------EPLLDRKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCC-----------hhHhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999965 99999975321 122 223444444444 4444555678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCCC
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1136 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1136 (1293)
+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++.+++..
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 999999999999999999999999999998654 7899999999998866 999999999999999999999876543
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=352.20 Aligned_cols=463 Identities=18% Similarity=0.233 Sum_probs=321.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccchhHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHH
Q 000774 635 FGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLS 714 (1293)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~G~il~rls~Di~~id~~~~~~~~~~~~~~~~~~~ 714 (1293)
..-.+.+.+........+.....++|.++.++++..|+.-+++.+.++++.++++|+..|. +-...+..+.+..+..++
T Consensus 59 llf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~ 137 (546)
T COG4615 59 LLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLG 137 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHH
Confidence 3334455566667777888889999999999999999999999999999999999999997 333345556666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHccHHHHHHhcHHH--HHHHHHHHH
Q 000774 715 TFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD--RMADINGKS 792 (1293)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~--~~~~~~~~~ 792 (1293)
+....++.+|.++.+.+..+++.++...+.+....+.-+...+....+.++++..+.|.+..+..+... .+.+.+...
T Consensus 138 s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~ 217 (546)
T COG4615 138 SAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPD 217 (546)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcc
Confidence 777788888876655444444433333332222222223333445667889999999999988764432 222222211
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 793 MD----KNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLAS 868 (1293)
Q Consensus 793 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 868 (1293)
.. ..............|..+.+-.+.++.+|+..... ...+ .....+....+.+-.++.+++....
T Consensus 218 a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~----w~st------~~a~tivlvlLflr~pL~s~vgilP 287 (546)
T COG4615 218 AQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLG----WAST------NVAATIVLVLLFLRTPLLSAVGILP 287 (546)
T ss_pred hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cchh------hHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 11 11112222223334444443333333332222111 1111 0111122223344556777777778
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCC
Q 000774 869 LAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 948 (1293)
Q Consensus 869 ~~~~~~~a~~Rl~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsG 948 (1293)
.+..+.++.+++.++-..|..... ....+.+.| ..|+++||.|.|.+.. --+..||++|++||.|-|+|.||||
T Consensus 288 ~l~~AqvA~~kiakle~~~~~a~~--~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsG 361 (546)
T COG4615 288 TLLTAQVAFNKIAKLELAPYKADF--PRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSG 361 (546)
T ss_pred HHHHHHHHHHHHHHhhcCCccccC--CCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCc
Confidence 888888999999887653322111 111222334 3599999999997653 3588999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEEccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHH
Q 000774 949 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 1028 (1293)
Q Consensus 949 KSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i 1028 (1293)
|||++++|+|+|+|++|+|++||.+++..++++.|+.++-|+-|.+||+.++- +-+..+.+.+..-+++..+....
T Consensus 362 KST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~----~e~~as~q~i~~~LqrLel~~kt 437 (546)
T COG4615 362 KSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG----PEGKASPQLIEKWLQRLELAHKT 437 (546)
T ss_pred HHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC----CccCCChHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999987552 22224556666656554443322
Q ss_pred HHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcch
Q 000774 1029 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNT 1106 (1293)
Q Consensus 1029 ~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~ 1106 (1293)
.-....+ ....||-|||.||++--|++.+-+|+++||=-+.-||.-++.+++.+--.. .|+||+.||||-..
T Consensus 438 sl~d~~f------s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~Y 511 (546)
T COG4615 438 SLNDGRF------SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHY 511 (546)
T ss_pred cccCCcc------cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchh
Confidence 2111111 123699999999999999999999999999999999999999988875533 58999999999999
Q ss_pred hhccCEEEEEeCCeEeee
Q 000774 1107 IIDCDRILLLDSGRVLEY 1124 (1293)
Q Consensus 1107 ~~~~d~i~vl~~G~i~~~ 1124 (1293)
...|||++-|++|+++|.
T Consensus 512 F~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 512 FIHADRLLEMRNGQLSEL 529 (546)
T ss_pred hhhHHHHHHHhcCceeec
Confidence 999999999999999886
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=375.34 Aligned_cols=217 Identities=28% Similarity=0.462 Sum_probs=185.1
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++..+|+.++
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFGK--EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 38999999999643 6999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000774 988 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKI 1066 (1293)
Q Consensus 988 ~v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~~p~i 1066 (1293)
|+||++.+|..|+++|+.+........ ...+.++++.+ |++ .........||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~------~~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 152 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEK------NVDVEYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEV 152 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcH------HHHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999889999987432111110 01122333332 443 234566778999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcC
Q 000774 1067 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134 (1293)
Q Consensus 1067 LlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1134 (1293)
|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (241)
T PRK14250 153 LLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNP 223 (241)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCC
Confidence 999999999999999999999998653 7899999999999876 9999999999999999999987543
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=394.85 Aligned_cols=216 Identities=25% Similarity=0.414 Sum_probs=185.1
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++ .+++||
T Consensus 6 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGSN--TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDIC 81 (351)
T ss_pred EEEEEeEEEEECCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 59999999999753 68999999999999999999999999999999999999999999999999987664 357899
Q ss_pred EEccccccccc-cHhhhcCCCCC---CCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1059 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~~---~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 1059 (1293)
||||++.+|.. |+++|+.+... ... +++.++++..++ ....+..+..||||||||++||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl-----------~~~~~r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDL-----------AGFEDRYVDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999976 99999975321 222 233444444444 334455567899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCCC
Q 000774 1060 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1136 (1293)
Q Consensus 1060 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1136 (1293)
|+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+||||++++.. ||||++|++|++++.|+|+++.+++..
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~ 230 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPAS 230 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 9999999999999999999999999999998754 7899999999999866 999999999999999999999876544
Q ss_pred hH
Q 000774 1137 SF 1138 (1293)
Q Consensus 1137 ~~ 1138 (1293)
.|
T Consensus 231 ~~ 232 (351)
T PRK11432 231 RF 232 (351)
T ss_pred hH
Confidence 33
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=357.85 Aligned_cols=203 Identities=27% Similarity=0.426 Sum_probs=176.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCce------------eecCcE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGTV 351 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~------------~~~~~i 351 (1293)
.|+++|||++|. ++.+++|+||+|++||+++++|||||||||+|++|.++++|++|... .+|.+|
T Consensus 1 MI~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 1 MIEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred CceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence 379999999996 57899999999999999999999999999999999999999999432 256689
Q ss_pred EEEcCCcccc-CccHHHHHccCCC---CCH----HHHHHHHHHcCChh--HHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000774 352 AYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQH--DLDLLPGGDVTEIGERGVNISGGQKQRVSM 421 (1293)
Q Consensus 352 ~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~--~~~~l~~g~~t~ig~~g~~LSGGqkqRial 421 (1293)
|||-|..-|| +.||.|||.+-.. .+. ++.++.++..+|.. +.+..| .+|||||+|||.+
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv 146 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGV 146 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHH
Confidence 9999999998 7899999986532 333 45566777888863 566666 5899999999999
Q ss_pred HHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEeCCeEEEecChHHHhhc
Q 000774 422 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 422 Aral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
||||+.+|+|+++||||++|||.++..+-+.+.+..+ -|+|+|+||||+++. +.+|||.+|++|+++..++|++++.+
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 9999999999999999999999999999887766433 389999999999875 56899999999999999999999987
Q ss_pred c
Q 000774 500 G 500 (1293)
Q Consensus 500 ~ 500 (1293)
.
T Consensus 227 P 227 (309)
T COG1125 227 P 227 (309)
T ss_pred c
Confidence 4
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=386.86 Aligned_cols=213 Identities=32% Similarity=0.571 Sum_probs=185.5
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++||+++|+.+ ..+|+||||+|++||++|++||||||||||+++|+|+++|++|+|.++|.+...- ....|++||
T Consensus 4 ~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 37899999999831 2699999999999999999999999999999999999999999999999998765 778999999
Q ss_pred EEccccccccc-cHhhhcCCCCCC-------CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1059 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~~~-------~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 1059 (1293)
|+||+|.++.. |++|||.++... .++.+.+.++..++. .........||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLE-----------DKANKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCc-----------hhhCcchhhcCHHHHHHHHHHHH
Confidence 99999998876 999999864321 123455555554443 22244567899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-cEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1060 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-S-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1060 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~-~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
|+.+|++|||||||+||||.+...+++.|+++.. + +||+++||.+++++. ||||++|++|+++..|+++++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999999875 4 699999999999988 999999999999999999998754
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=360.70 Aligned_cols=187 Identities=29% Similarity=0.439 Sum_probs=165.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCceeec--------CcEEEEc
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--------GTVAYVP 355 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~~~--------~~i~~v~ 355 (1293)
.+++++++++|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|. +.+. ..++||+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~-V~~~g~~v~~p~~~~~~vF 78 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE-VLLDGRPVTGPGPDIGYVF 78 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCcccCCCCCCEEEEe
Confidence 5889999999973 68999999999999999999999999999999999999999994 3332 3699999
Q ss_pred CCccccC-ccHHHHHccCCCC-------CHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhc
Q 000774 356 QVSWIFN-ATVRDNILFGSAF-------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 427 (1293)
Q Consensus 356 Q~~~l~~-~Tv~eni~~g~~~-------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~ 427 (1293)
|++.||. .||+||+.|+... ..++..+.++.++|..+-+.+|+ +|||||||||||||||+.
T Consensus 79 Q~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 79 QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALAT 147 (248)
T ss_pred ccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHHHhc
Confidence 9999975 8999999998543 12467788999999999988884 899999999999999999
Q ss_pred CCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEeCC
Q 000774 428 NSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEG 485 (1293)
Q Consensus 428 ~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G 485 (1293)
+|++|+||||+++||+.|+..+.+.+.+.+. .++|+++||||.++.- -+|||++|.++
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999999999999999988877654 4799999999998864 58999999984
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=393.50 Aligned_cols=220 Identities=28% Similarity=0.463 Sum_probs=185.7
Q ss_pred EEEEEEEEEecC--CCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH---Hh
Q 000774 909 IKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 983 (1293)
Q Consensus 909 i~~~~v~~~y~~--~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 983 (1293)
|+++||+++|+. ...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 1246999999999999999999999999999999999999999999999999998877654 47
Q ss_pred hhceEEcccccccc-ccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 000774 984 KILGIIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1059 (1293)
Q Consensus 984 ~~i~~v~Q~~~lf~-~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 1059 (1293)
++|||+||++.+|. .|+++|+.+.. ..+..+.. ..+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIK-----ARVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 78999999999886 59999996421 12222111 1223344443 55555666678899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCC
Q 000774 1060 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1135 (1293)
Q Consensus 1060 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1135 (1293)
|+.+|+||||||||++||+.+.+.+++.|+++.+ ++|+|++||+++.+.. ||||++|++|++++.|+++++.....
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 233 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPK 233 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 9999999999999999999999999999998753 7899999999999877 99999999999999999999986543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=351.71 Aligned_cols=212 Identities=30% Similarity=0.492 Sum_probs=179.7
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------
Q 000774 282 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 346 (1293)
Q Consensus 282 ~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~--------------- 346 (1293)
.+.|++++++++|+ ++.+++||||+|++||+++|+||||||||||+++|.|+++|++|.+..
T Consensus 6 ~~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 35799999999996 578999999999999999999999999999999999999999995432
Q ss_pred ecCcEEEEcCCcccc-CccHHHHHccCC----CCCHHHH----HHHHHHcCChhH-HhcCCCCCcccccCCCCCCChHHH
Q 000774 347 IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEPARY----EKAIDVTSLQHD-LDLLPGGDVTEIGERGVNISGGQK 416 (1293)
Q Consensus 347 ~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~~~~----~~~~~~~~l~~~-~~~l~~g~~t~ig~~g~~LSGGqk 416 (1293)
+++++|+++|+..|| +.||+||+.|.- ..+++.+ ..-++.++|... .+.+| .+||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHH
Confidence 356799999999999 679999999852 2333333 334778899887 77777 48999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc--CCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecCh
Q 000774 417 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 493 (1293)
Q Consensus 417 qRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 493 (1293)
+|+|||||+..||+++++||||+||||.+...+-+ +++... -|.|+|+||||++.+.. |||++++.+|+|+.+|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~-LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVIDE-LIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHH-HHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 99999999999999999999999999999887765 444332 28999999999999875 699999999999999999
Q ss_pred HHHhhc-cHHHHHHHH
Q 000774 494 EDLSNN-GELFQKLME 508 (1293)
Q Consensus 494 ~~l~~~-~~~~~~~~~ 508 (1293)
+++.+. .+..++++.
T Consensus 231 ~el~~sd~P~v~qf~~ 246 (263)
T COG1127 231 EELLASDDPWVRQFFN 246 (263)
T ss_pred HHHHhCCCHHHHHHhc
Confidence 999876 455555543
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=351.99 Aligned_cols=220 Identities=27% Similarity=0.435 Sum_probs=189.8
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHH-hhhc
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 986 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 986 (1293)
.++++|++..|++. ++|++|||++++||+++|+||||+|||||+++|+|+.+|.+|+|.++|.|++..+++.. |..|
T Consensus 3 mL~v~~l~~~YG~~--~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccce--eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 37999999999864 79999999999999999999999999999999999999999999999999999998875 5569
Q ss_pred eEEccccccccc-cHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000774 987 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1065 (1293)
Q Consensus 987 ~~v~Q~~~lf~~-ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 1065 (1293)
+||||...+|.. ||.|||.......+. +......+++..+-+| .|....+..+.+|||||||.|+|||||+.+|+
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~---~~~~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRD---KEAQERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccc---cccccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 999999999976 999999753211111 0001111334445566 46677778889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1066 ILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1066 iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
+|+|||||.||-|.-.+.|.+.|+++.+ +.||++|-++...+.. +||.+||++|+|+..|+.+||.++
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999999874 4699999999999766 999999999999999999999865
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=362.77 Aligned_cols=204 Identities=31% Similarity=0.517 Sum_probs=174.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCceee---------cCcEEE
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------RGTVAY 353 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~~---------~~~i~~ 353 (1293)
..|+++|++|+|++ . ++|+||||+|++|++++|+||||||||||+|+|+|+++|.+|.+... +.+|||
T Consensus 3 ~~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 46999999999963 2 69999999999999999999999999999999999999999954432 146999
Q ss_pred EcCCc---cccCccHHHHHccCCCC-----------CHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000774 354 VPQVS---WIFNATVRDNILFGSAF-----------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 419 (1293)
Q Consensus 354 v~Q~~---~l~~~Tv~eni~~g~~~-----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRi 419 (1293)
|||.. |-|..||+|-+.+|... +.+++.++++.+++.+..+. ...+|||||+|||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-----------~i~~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-----------QIGELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-----------cccccCcHHHHHH
Confidence 99964 55889999999998421 23778889999998866553 2357999999999
Q ss_pred HHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhh
Q 000774 420 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 498 (1293)
Q Consensus 420 alAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 498 (1293)
.|||||+++|++|+|||||+++|+.++..+++.+.+...+|+||++||||++.+. .+|+|+.| |+++.+.|++++..+
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 9999999999999999999999999999999866666666999999999999886 58999999 567889999999876
Q ss_pred ccH
Q 000774 499 NGE 501 (1293)
Q Consensus 499 ~~~ 501 (1293)
...
T Consensus 228 ~~~ 230 (254)
T COG1121 228 EEN 230 (254)
T ss_pred HHH
Confidence 543
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=393.03 Aligned_cols=220 Identities=24% Similarity=0.409 Sum_probs=187.4
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...++. ++.||
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGAF--TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCCe--EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 38999999999753 589999999999999999999999999999999999999999999999999877653 67899
Q ss_pred EEccccccccc-cHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1063 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 1063 (1293)
||||++.+|.. |+++|+.+... .+..+. ...+.+.++.+ |++...+..+.+||||||||++|||||+.+
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~-----~~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~~ 152 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEV-----AERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALATS 152 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999975 99999975311 111111 12233444443 555666677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCCChH
Q 000774 1064 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1138 (1293)
Q Consensus 1064 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 1138 (1293)
|++|||||||++||+.+++.+.+.|++..+ +.|+|+|||+++++.. ||||++|++|++++.|+|+++.+++...|
T Consensus 153 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 153 PGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 999999999999999999999999998654 7899999999999866 99999999999999999999987654333
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=375.50 Aligned_cols=216 Identities=24% Similarity=0.421 Sum_probs=185.0
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC---CCcceEEECCeecCCCChHHHhhh
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLRKI 985 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~r~~ 985 (1293)
++++|+++.|++ +++|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+....|+.
T Consensus 3 ~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 3 AKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred eeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 789999999974 369999999999999999999999999999999999985 689999999999988777788889
Q ss_pred ceEEccccccccccHhhhcCCCCC---C------CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 000774 986 LGIIPQSPVLFSGTVRFNLDPFSE---H------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 1056 (1293)
Q Consensus 986 i~~v~Q~~~lf~~ti~~nl~~~~~---~------~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 1056 (1293)
++|+||++.+|..|+++|+.+... . .++++.++++.+++.+++ .....+.+.+||||||||++|
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-------KDKLKQNALALSGGQQQRLCI 153 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh-------hHHhcCCcccCCHHHHHHHHH
Confidence 999999999998999999964321 0 011233344444433222 123455678899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1057 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1057 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
||||+.+|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999987778999999999999876 999999999999999999998754
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=370.91 Aligned_cols=216 Identities=34% Similarity=0.548 Sum_probs=192.9
Q ss_pred CccEEEEEEEEEecCC-CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhh
Q 000774 906 SGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984 (1293)
Q Consensus 906 ~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 984 (1293)
.+.++++|++++|++. ..++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+....++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4569999999999743 236999999999999999999999999999999999999999999999999988777777788
Q ss_pred hceEEccccccccccHhhhcCCCCC-CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000774 985 ILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1063 (1293)
Q Consensus 985 ~i~~v~Q~~~lf~~ti~~nl~~~~~-~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 1063 (1293)
.++|+||++.+|..|+++|+.+... ....++.+..+..++.++++.+|.|+++.......+||||||||++|||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 9999999999998999999975322 223344555566678899999988999888888999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeE
Q 000774 1064 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 1121 (1293)
Q Consensus 1064 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i 1121 (1293)
|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999997777999999999999978999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=382.64 Aligned_cols=217 Identities=29% Similarity=0.487 Sum_probs=182.4
Q ss_pred EEEEEEEEEecCCC---CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCC--hHHHh
Q 000774 909 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLR 983 (1293)
Q Consensus 909 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~--~~~~r 983 (1293)
|+++||+++|++.. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ....|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999996421 36999999999999999999999999999999999999999999999999997643 35678
Q ss_pred hhceEEcccc--ccccccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcc--hhhhcCCCCCChhHHHHHHH
Q 000774 984 KILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD--AQVSEAGENFSVGQRQLLSL 1056 (1293)
Q Consensus 984 ~~i~~v~Q~~--~lf~~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~--~~~~~~~~~LSgGqkqrl~l 1056 (1293)
++||||||+| .+|..|+++|+.+.. ..++++..+. +.+.++.+ |+. +..+..+..||||||||++|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHHc--CCCchhhccCCcccCCHHHHHHHHH
Confidence 8999999998 577889999997432 1222222211 12233332 343 44566778899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1057 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1057 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
||||+.+|++|||||||++||+.+.+.+++.|+++.+ +.|||+|||+++++.. ||||++|++|++++.|+++++.+
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999998753 7899999999999865 99999999999999999999875
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=382.68 Aligned_cols=215 Identities=28% Similarity=0.426 Sum_probs=184.3
Q ss_pred cEEEEEEEEEecCC-CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhc
Q 000774 908 SIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 986 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 986 (1293)
.++++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999642 23599999999999999999999999999999999999999999999999999887888888999
Q ss_pred eEEccccc--cccccHhhhcCCCC---CCCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 000774 987 GIIPQSPV--LFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1057 (1293)
Q Consensus 987 ~~v~Q~~~--lf~~ti~~nl~~~~---~~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 1057 (1293)
||+||+|. ++..|+++|+.+.. ..+. +.+.++++.++ ++...+....+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVG-----------MQDFKEREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCC-----------CHhHhhCCcccCCHHHHHHHHHH
Confidence 99999983 55679999997531 1222 22344444444 44444555678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhc
Q 000774 1058 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1058 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+..||||++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 7899999999999877999999999999999999998753
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=375.08 Aligned_cols=220 Identities=28% Similarity=0.469 Sum_probs=184.3
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHH-hhhce
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 987 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 987 (1293)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGGL--VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECCE--EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 4689999999743 69999999999999999999999999999999999999999999999999988776554 56799
Q ss_pred EEccccccccc-cHhhhcCCCCCCC-HHHH-------HHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFSEHS-DADL-------WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1058 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~~~~-~~~~-------~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 1058 (1293)
|+||++.+|.. |+++|+.+..... ...+ ........+.++++.+ |++...+....+||||||||++|||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHHH
Confidence 99999999876 9999986432110 0000 0001112244555554 5666667778899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1059 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1059 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
||+.+|++|||||||++||+.+.+.+++.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 9999999999999999999999999999999875 57899999999999877 99999999999999999998864
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=381.42 Aligned_cols=212 Identities=26% Similarity=0.389 Sum_probs=181.5
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++|++++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.||
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 38999999999633 36999999999999999999999999999999999999999999999999998877788888999
Q ss_pred EEcccc--ccccccHhhhcCCCCC---CCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000774 988 IIPQSP--VLFSGTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1058 (1293)
Q Consensus 988 ~v~Q~~--~lf~~ti~~nl~~~~~---~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 1058 (1293)
|+||+| .++..|+++|+.+... ... +++.++++.+++ ..........||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-----------~~~~~~~~~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM-----------WDFRDKPPYHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-----------HHHhcCChhhCCHHHHHHHHHHH
Confidence 999998 5777899999975321 111 223334444443 33344455689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1059 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1059 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
||+.+|++|||||||++||+.+...+.+.|+++. .++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999999875 47899999999999865 9999999999999999987653
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=371.18 Aligned_cols=202 Identities=29% Similarity=0.427 Sum_probs=170.2
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChH---HHhhh
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 985 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~ 985 (1293)
++++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964323699999999999999999999999999999999999999999999999998766543 36788
Q ss_pred ceEEccccccccc-cHhhhcCCCC---CCC----HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 000774 986 LGIIPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1057 (1293)
Q Consensus 986 i~~v~Q~~~lf~~-ti~~nl~~~~---~~~----~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 1057 (1293)
++|+||++.+|.. |+++|+.+.. ... ++++.++++..+ ++........+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVG-----------LEGKAHALPMQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHHHHH
Confidence 9999999998864 9999986421 111 123344444444 33444455568999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeE
Q 000774 1058 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 1121 (1293)
Q Consensus 1058 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 1121 (1293)
|||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 37899999999999876 999999999975
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=389.95 Aligned_cols=216 Identities=27% Similarity=0.460 Sum_probs=183.9
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.|+++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+.||
T Consensus 41 ~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 49999999999753 6999999999999999999999999999999999999999999999999987643 46788999
Q ss_pred EEcccccccc-ccHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000774 988 IIPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1063 (1293)
Q Consensus 988 ~v~Q~~~lf~-~ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 1063 (1293)
|+||++.++. .|+++|+.++.. ....+..+. +.++++. .++.........+||||||||++|||||+.+
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~--~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEF--ARLESKADARVSDLSGGMKRRLTLARALIND 190 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--cCCchhhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999875 599999974321 122211111 2233333 3455555666678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1064 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1064 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
|++|||||||+|||+.+++.+++.|+++. .++|||++||+++++.. ||||++|++|+++..|+++++.+.
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999875 47999999999999977 999999999999999999999754
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=372.24 Aligned_cols=214 Identities=26% Similarity=0.418 Sum_probs=180.3
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 3 l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGDF--VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECCE--EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 7899999999753 69999999999999999999999999999999999999999999999999876543 3568999
Q ss_pred Ecccccccc-ccHhhhcCCCCCC-------CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 989 IPQSPVLFS-GTVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 989 v~Q~~~lf~-~ti~~nl~~~~~~-------~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
+||+|.+|. .|+++|+.+.... ...+.. ..+.+.++.+ |++........+||||||||++|||||
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 999999886 5999999753211 111111 1123344443 455555666778999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 999999999999999999999999999998753 6899999999998766 999999999999999999998753
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=374.79 Aligned_cols=220 Identities=29% Similarity=0.440 Sum_probs=180.7
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCC---hHHHhhh
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRKI 985 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~---~~~~r~~ 985 (1293)
++++|++++|+++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999752 36999999999999999999999999999999999999999999999999998766 4557788
Q ss_pred ceEEcccccccc-ccHhhhcCCCCCCCHH---HHH---HHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000774 986 LGIIPQSPVLFS-GTVRFNLDPFSEHSDA---DLW---EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1058 (1293)
Q Consensus 986 i~~v~Q~~~lf~-~ti~~nl~~~~~~~~~---~~~---~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 1058 (1293)
++|+||++.+|. .|+++|+.+....... .+. .......+.+.++.+ ++....+..+.+||||||||++|||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIAR 157 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHHH
Confidence 999999998886 5999998632110000 000 000011123344442 4555556677899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1059 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1059 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
||+.+|+||||||||++||+.+.+.+.+.|+++. .++|||++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 9999999999999999999999999999999875 37899999999999985 9999999999999999998874
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=370.07 Aligned_cols=214 Identities=26% Similarity=0.435 Sum_probs=178.9
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++||++.|++...++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 478999999975223699999999999999999999999999999999999999999999999998764 3566788999
Q ss_pred Ecccccccc-ccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 989 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 989 v~Q~~~lf~-~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
+||++.+|. .|+++|+.+.. .....+.. ..+.++++.+ ++.........+||||||||++|||||+.+|
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIK-----EEVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGGP 152 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcCC
Confidence 999999884 69999986421 11111111 1123333332 4444445556789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhh
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1130 (1293)
++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999998777999999999999876 999999999999999998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-42 Score=348.85 Aligned_cols=207 Identities=26% Similarity=0.392 Sum_probs=177.3
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-------------------
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA------------------- 343 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~------------------- 343 (1293)
+.++++|+++.|+ ++.+|+|||++|++++++|++|||||||||||+++.+..+...|.
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 4689999999996 478999999999999999999999999999999999998876531
Q ss_pred ceeecCcEEEEcCCccccCccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHH
Q 000774 344 SAVIRGTVAYVPQVSWIFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 416 (1293)
Q Consensus 344 ~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqk 416 (1293)
...+|++||+|+|.|.-|..||+|||.+|.. .. ++.++++++.++|-+.... .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 1225678999999999999999999999842 11 2456777777777655442 24567788999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHH
Q 000774 417 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 495 (1293)
Q Consensus 417 qRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 495 (1293)
||++|||||.-+|+|||||||||+|||.+..+|.+ ++...+++-|+|+|||.+....+ +|++..+..|++++.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEe-Li~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEE-LITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHH-HHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 99999999999999999999999999999999976 55556678999999999998876 59999999999999999999
Q ss_pred Hhhcc
Q 000774 496 LSNNG 500 (1293)
Q Consensus 496 l~~~~ 500 (1293)
+..+.
T Consensus 235 iF~~P 239 (253)
T COG1117 235 IFTNP 239 (253)
T ss_pred hhcCc
Confidence 88764
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=389.57 Aligned_cols=217 Identities=23% Similarity=0.383 Sum_probs=183.2
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++ .+++|+|
T Consensus 3 L~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~ 78 (353)
T PRK10851 3 IEIANIKKSFGRT--QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGF 78 (353)
T ss_pred EEEEEEEEEeCCe--EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEE
Confidence 7899999999753 69999999999999999999999999999999999999999999999999977654 4568999
Q ss_pred Eccccccccc-cHhhhcCCCCC-------CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 989 IPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~~-------~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
|||++.+|.. |+++|+.+... .+..+.. ..+.+.++.+ +++...+..+.+||||||||++|||||
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIK-----AKVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999975 99999975321 1111111 1122333332 444445566678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCCC
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1136 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1136 (1293)
+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+||||++++.. ||||++|++|++++.|+++++..++..
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~~ 230 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPAT 230 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 999999999999999999999999999998754 6899999999999877 999999999999999999999875443
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=369.75 Aligned_cols=216 Identities=29% Similarity=0.455 Sum_probs=180.3
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHH-hhhce
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 987 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 987 (1293)
|+++||+++|++. ++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 4789999999753 69999999999999999999999999999999999999999999999999987776654 56799
Q ss_pred EEccccccccc-cHhhhcCCCCCCC-HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFSEHS-DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1065 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~~~~-~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 1065 (1293)
|+||++.+|.. |+++|+.+..... ..+.. ..+.+.++.++ +++...+....+||||||||++|||||+.+|+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRK-----ARLERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHH-----HHHHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999876 9999996432211 11111 11222233321 23444556677899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1066 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1066 iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
+|||||||++||+.+++.+++.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 999999999999999999999999875 47899999999999876 99999999999999999888753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=391.94 Aligned_cols=205 Identities=29% Similarity=0.438 Sum_probs=177.2
Q ss_pred CceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHH----hhhceEEccccccccc-
Q 000774 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG- 998 (1293)
Q Consensus 924 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~- 998 (1293)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++..+ |+.|+||||++.+|+.
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 69999999999999999999999999999999999999999999999999999888877 7789999999999975
Q ss_pred cHhhhcCCCC---CCCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeC
Q 000774 999 TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1071 (1293)
Q Consensus 999 ti~~nl~~~~---~~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDE 1071 (1293)
||++|+.+.. .... +++.++++.+ |++...++.+.+||||||||++|||||+.+|+||||||
T Consensus 87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v-----------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 87 TILQNTSLGPELLGWPEQERKEKALELLKLV-----------GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999996421 1122 2233334433 45555666677899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCCChHH
Q 000774 1072 ATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1139 (1293)
Q Consensus 1072 pTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1139 (1293)
||++||+.+.+.+++.+.++. .++|+|+|||+++++.. ||||++|++|++++.|++++++++....|.
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 999999999999999998864 37999999999998766 999999999999999999999876544443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=372.52 Aligned_cols=216 Identities=29% Similarity=0.493 Sum_probs=182.1
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCC-----cceEEECCeecCCC--ChHH
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKF--GLMD 981 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~-----~G~I~i~g~~i~~~--~~~~ 981 (1293)
++++||+++|++. ++++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999753 5999999999999999999999999999999999999998 99999999998753 3456
Q ss_pred HhhhceEEccccccccccHhhhcCCCC---C-CCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 000774 982 LRKILGIIPQSPVLFSGTVRFNLDPFS---E-HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1053 (1293)
Q Consensus 982 ~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~-~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 1053 (1293)
.|+.++|+||++.+|..|+++|+.+.. . ... +.+.++++..++.+.+ ....+....+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV-------KDRLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch-------hhHhhCCcccCCHHHHHH
Confidence 788899999999998899999986421 1 111 1223333333332111 034556678899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1054 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1054 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999999876 99999999999999999999875
Q ss_pred c
Q 000774 1133 N 1133 (1293)
Q Consensus 1133 ~ 1133 (1293)
.
T Consensus 233 ~ 233 (247)
T TIGR00972 233 N 233 (247)
T ss_pred C
Confidence 4
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=390.07 Aligned_cols=221 Identities=24% Similarity=0.419 Sum_probs=186.5
Q ss_pred ccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCc--ceEEECCeecCCCChHHHhh
Q 000774 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER--GRILIDGFDIAKFGLMDLRK 984 (1293)
Q Consensus 907 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~--G~I~i~g~~i~~~~~~~~r~ 984 (1293)
+.++++||+++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...++ .++
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r 79 (362)
T TIGR03258 4 GGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKR 79 (362)
T ss_pred eEEEEEEEEEEECCe--EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHC
Confidence 569999999999753 69999999999999999999999999999999999999999 999999999987665 356
Q ss_pred hceEEccccccccc-cHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 985 ILGIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 985 ~i~~v~Q~~~lf~~-ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
.||||+|++.+|.. |+++|+.+.. .....+..+ .+.+.++. .|++...+....+||||||||++|||||
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~--~gL~~~~~~~~~~LSgGq~QRvaLARAL 152 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKL--VGLGDAAAHLPAQLSGGMQQRIAIARAI 152 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHh--cCCCchhhCChhhCCHHHHHHHHHHHHH
Confidence 89999999999976 9999997421 122222111 12233333 2455556666788999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC---CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCCC
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK---SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1136 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~---~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1136 (1293)
+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+||||++++.. ||||++|++|++++.|+++++.+++..
T Consensus 153 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~~ 232 (362)
T TIGR03258 153 AIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPAD 232 (362)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcCc
Confidence 999999999999999999999999999988654 6899999999999866 999999999999999999999876543
Q ss_pred hH
Q 000774 1137 SF 1138 (1293)
Q Consensus 1137 ~~ 1138 (1293)
.|
T Consensus 233 ~~ 234 (362)
T TIGR03258 233 GF 234 (362)
T ss_pred HH
Confidence 33
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=379.39 Aligned_cols=214 Identities=27% Similarity=0.439 Sum_probs=184.2
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++||+++|+...+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.||
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 38999999999643346999999999999999999999999999999999999999999999999998887777888999
Q ss_pred EEcccc--ccccccHhhhcCCCC---CCCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000774 988 IIPQSP--VLFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1058 (1293)
Q Consensus 988 ~v~Q~~--~lf~~ti~~nl~~~~---~~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 1058 (1293)
|+||++ .+++.|+.+|+.+.. .... +++.++++..+ ++.........||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVG-----------MEDFLNREPHRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcC-----------ChhhhhCCcccCCHHHHHHHHHHH
Confidence 999998 455679999997531 1122 22333444434 444445556789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhh
Q 000774 1059 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1059 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+..||||++|++|++++.|+++++.+
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999998764 789999999999988899999999999999999999875
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=392.50 Aligned_cols=212 Identities=26% Similarity=0.433 Sum_probs=185.3
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.+.+...++++||
T Consensus 3 ~L~~~nls~~y~~~--~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGDT--TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECCE--EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 38999999999753 6999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEcccccc-ccccHhhhcCCCCC-----C---C---HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 000774 988 IIPQSPVL-FSGTVRFNLDPFSE-----H---S---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1055 (1293)
Q Consensus 988 ~v~Q~~~l-f~~ti~~nl~~~~~-----~---~---~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 1055 (1293)
|+||++.+ |+.|+++|+.+... . . ++.+.++++.+++.+ ..+....+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~-----------~~~~~~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ-----------FADRPVTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHH
Confidence 99999987 46799999864311 1 1 223445555544433 334456789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1056 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
|||||+++|+||||||||++||+.++..+++.|+++. .++|||++||+++.+.. |||+++|++|++++.|++++++.
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 9999999999999999999999999999999999875 47899999999999966 99999999999999999999875
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=368.28 Aligned_cols=206 Identities=26% Similarity=0.449 Sum_probs=171.8
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCCe--eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 4689999999753 69999999999999999999999999999999999999999999999999876543 4678999
Q ss_pred Ecccccccc-ccHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 989 IPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 989 v~Q~~~lf~-~ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
+||++.+|. .|+++|+.+... ....+.. ..+.+.++.+ |++........+||||||||++|||||+.+|
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~p 149 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIR-----ARVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALAREP 149 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 599999964211 1111111 1123334432 4555556666789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
++|||||||++||+.+.+.+++.|+++.+ ++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 150 ~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 150 SLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998653 7899999999999876 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=380.37 Aligned_cols=217 Identities=23% Similarity=0.396 Sum_probs=181.7
Q ss_pred EEEEEEEEEecCCC---CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCC----CChHH
Q 000774 909 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----FGLMD 981 (1293)
Q Consensus 909 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~----~~~~~ 981 (1293)
|+++||+++|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 259999999999999999999999999999999999999999999999999863 33556
Q ss_pred HhhhceEEcccc--ccccccHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 000774 982 LRKILGIIPQSP--VLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 1055 (1293)
Q Consensus 982 ~r~~i~~v~Q~~--~lf~~ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~ 1055 (1293)
+|+.+|||+|+| .+|..|+.+|+.+... ...++..+ .+.+.++.+ |+. ........+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 788999999998 6888899999975321 12222111 122333332 443 2345667889999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1056 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|||++||+++.+.. ||||++|++|++++.|+++++..
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999999999998865 47899999999999865 99999999999999999999874
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=372.71 Aligned_cols=217 Identities=27% Similarity=0.457 Sum_probs=184.5
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++||+++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+....++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999752 369999999999999999999999999999999999999999999999999988777778889999
Q ss_pred Ecccccccc-ccHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcch--hhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 989 IPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDA--QVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 989 v~Q~~~lf~-~ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~~--~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
+||++.+|. .|+++|+.+... ....+ ....+.+.++.+ |+.. ...+.+.+||||||||++|||||++
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~-----~~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEK-----IRERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALAA 152 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHhc
Confidence 999999886 599999964311 11111 112234455553 4443 4566778899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 153 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999998753 7899999999998766 999999999999999999988654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=374.20 Aligned_cols=217 Identities=24% Similarity=0.396 Sum_probs=182.8
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC-----CCcceEEECCeecCC--CChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 980 (1293)
.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECCe--eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 49999999999743 69999999999999999999999999999999999975 689999999999864 3445
Q ss_pred HHhhhceEEccccccccccHhhhcCCCC---CC-C----HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~-~----~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
.+|+.++|+||++.+|..|+++|+.+.. .. . ++++.++++.+++.+.+ ....++.+.+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHHH
Confidence 6788999999999999889999996421 11 1 12334444444433221 22345667789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998667899999999999866 9999999999999999999987
Q ss_pred hc
Q 000774 1132 SN 1133 (1293)
Q Consensus 1132 ~~ 1133 (1293)
+.
T Consensus 237 ~~ 238 (253)
T PRK14242 237 TR 238 (253)
T ss_pred cC
Confidence 54
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=373.33 Aligned_cols=219 Identities=25% Similarity=0.405 Sum_probs=183.8
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-----CcceEEECCeecCC--CChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~~~ 980 (1293)
.++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCCc--eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 58999999999753 699999999999999999999999999999999999997 48999999998853 2345
Q ss_pred HHhhhceEEccccccccccHhhhcCCCCC----CC----HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~----~~----~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
..|+.|+|+||++.+|..|+++|+.+... .. ++.+.++++.+++.+.+ ....+..+.+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV-------KDKLNTNALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-------HHHHhCCcccCCHHHHH
Confidence 67888999999999988899999964311 11 12234444444432211 22345567789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++|||||+.+|++|||||||++||+.+.+.+++.|+++.+++|+|++||+++++.. ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998667999999999999866 9999999999999999999997
Q ss_pred hcCC
Q 000774 1132 SNEG 1135 (1293)
Q Consensus 1132 ~~~~ 1135 (1293)
+...
T Consensus 238 ~~~~ 241 (254)
T PRK14273 238 FNPK 241 (254)
T ss_pred hCCC
Confidence 6543
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=379.64 Aligned_cols=218 Identities=22% Similarity=0.407 Sum_probs=184.1
Q ss_pred EEEEEEEEEecCCC---CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCC----ChHH
Q 000774 909 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 981 (1293)
Q Consensus 909 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~----~~~~ 981 (1293)
++++||+++|++.. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996422 3699999999999999999999999999999999999999999999999998653 3456
Q ss_pred HhhhceEEcccc--ccccccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 000774 982 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 1055 (1293)
Q Consensus 982 ~r~~i~~v~Q~~--~lf~~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~ 1055 (1293)
+|++||||||+| .+|..|+.+|+.+.. ..+..+..+ .+.+.++. .|++ ...+..+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~--~gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKN-----YAHRLLMD--LGFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHH--cCCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 578889999997532 112222221 12344444 3676 3456678899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1056 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 37999999999999865 99999999999999999999875
Q ss_pred c
Q 000774 1133 N 1133 (1293)
Q Consensus 1133 ~ 1133 (1293)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 3
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=390.04 Aligned_cols=216 Identities=24% Similarity=0.405 Sum_probs=184.9
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.||
T Consensus 14 ~L~l~~l~~~~~~~--~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 89 (375)
T PRK09452 14 LVELRGISKSFDGK--EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVN 89 (375)
T ss_pred eEEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999753 689999999999999999999999999999999999999999999999999876654 56899
Q ss_pred EEccccccccc-cHhhhcCCCCC---CCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1059 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~~---~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 1059 (1293)
||||++.+|.. ||++|+.+... ... +++.++++..++ +......+.+||||||||++||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~p~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQL-----------EEFAQRKPHQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHHHHHHHH
Confidence 99999999976 99999975321 122 223344444444 444455557899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCCC
Q 000774 1060 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1136 (1293)
Q Consensus 1060 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1136 (1293)
|+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+||||++++.. ||||++|++|++++.|+++++.+++..
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~ 238 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKN 238 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999998754 7899999999999766 999999999999999999999876543
Q ss_pred hH
Q 000774 1137 SF 1138 (1293)
Q Consensus 1137 ~~ 1138 (1293)
.|
T Consensus 239 ~~ 240 (375)
T PRK09452 239 LF 240 (375)
T ss_pred HH
Confidence 33
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=372.77 Aligned_cols=220 Identities=28% Similarity=0.411 Sum_probs=179.8
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCCh---HHHhhh
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLRKI 985 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~---~~~r~~ 985 (1293)
++++||+++|+.+ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999722 369999999999999999999999999999999999999999999999999877654 346788
Q ss_pred ceEEcccccccc-ccHhhhcCCCCCCCH---HHHH---HHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000774 986 LGIIPQSPVLFS-GTVRFNLDPFSEHSD---ADLW---EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1058 (1293)
Q Consensus 986 i~~v~Q~~~lf~-~ti~~nl~~~~~~~~---~~~~---~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 1058 (1293)
++|+||++.+|. .|+++|+.+...... ..+. .......+.+.++.+ |++...+..+.+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIAR 158 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHH
Confidence 999999998886 599999964211000 0000 000111223344443 4555556677889999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1059 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1059 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 99999999999999999999999999999998743 7899999999999866 9999999999999999998863
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=383.59 Aligned_cols=215 Identities=24% Similarity=0.409 Sum_probs=185.8
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+++||
T Consensus 3 l~~~~l~~~~~~~--~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGTQ--NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECCE--EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 7899999999743 69999999999999999999999999999999999999999999999999876 44577889999
Q ss_pred Eccccccccc-cHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 989 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
+||++.+|.. |++||+.++.. ...++..+ .+.+.++.+ |++...+.....||||||||++|||||+++|
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999876 99999964321 11111111 123344443 5666667777899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
++|||||||+|||+.+.+.+++.|+++.+++|||++||+++++.. ||||++|++|++++.|+++++.+.
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999999999999999998778999999999999987 999999999999999999999754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=362.70 Aligned_cols=202 Identities=29% Similarity=0.487 Sum_probs=175.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCceeec-------------Cc
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------GT 350 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~~~-------------~~ 350 (1293)
.++++|++|+|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|.+|. +.+. +.
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~-V~l~g~~i~~~~~kelAk~ 77 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE-VLLDGKDIASLSPKELAKK 77 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCE-EEECCCchhhcCHHHHhhh
Confidence 478999999996 578999999999999999999999999999999999999999984 3332 36
Q ss_pred EEEEcCCccc-cCccHHHHHccCCC-----------CCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHH
Q 000774 351 VAYVPQVSWI-FNATVRDNILFGSA-----------FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 418 (1293)
Q Consensus 351 i~~v~Q~~~l-~~~Tv~eni~~g~~-----------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqR 418 (1293)
+|||||.+.. +..||+|-+.+|+. .|.+.+.++++.+++.+..+.. ..+||||||||
T Consensus 78 ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQr 146 (258)
T COG1120 78 LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQR 146 (258)
T ss_pred EEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHH
Confidence 9999999765 68899999999852 1233567788888888766542 35899999999
Q ss_pred HHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchh-hhCCeEEEEeCCeEEEecChHHH
Q 000774 419 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDL 496 (1293)
Q Consensus 419 ialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~-~~~~tvi~vtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l 496 (1293)
+.|||||+++|+|++||||||+||....-.+++.+.+.. .+|+|+|+|.||++.. ..||++++|++|+++.+|++++.
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence 999999999999999999999999999999998776654 4589999999999875 56999999999999999999998
Q ss_pred hhcc
Q 000774 497 SNNG 500 (1293)
Q Consensus 497 ~~~~ 500 (1293)
++.+
T Consensus 227 lT~e 230 (258)
T COG1120 227 LTEE 230 (258)
T ss_pred cCHH
Confidence 8754
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=373.00 Aligned_cols=219 Identities=25% Similarity=0.397 Sum_probs=184.8
Q ss_pred ccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC-----CCcceEEECCeecCC--CCh
Q 000774 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGL 979 (1293)
Q Consensus 907 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~ 979 (1293)
+.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 12 ~~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 12 SKIQVRNLNFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred ceEEEEEEEEEeCCe--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 459999999999753 69999999999999999999999999999999999986 589999999999853 345
Q ss_pred HHHhhhceEEccccccccccHhhhcCCCC----CCCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHH
Q 000774 980 MDLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1051 (1293)
Q Consensus 980 ~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~----~~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqk 1051 (1293)
..+|++|+|+||++.+|..|+++|+.+.. ..+. +++.++++.+++.+ ++....++...+||||||
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~ 162 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN-------EVKDKLHQSGYSLSGGQQ 162 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCh-------hhHHHHhcCCCCCCHHHH
Confidence 67788999999999999899999996421 1122 22334444433321 122345667788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhh
Q 000774 1052 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130 (1293)
Q Consensus 1052 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1130 (1293)
||++|||||+.+|+||||||||++||+.+++.+.+.|++...++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 163 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 163 QRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998667899999999999876 999999999999999999998
Q ss_pred hhcC
Q 000774 1131 LSNE 1134 (1293)
Q Consensus 1131 ~~~~ 1134 (1293)
....
T Consensus 243 ~~~~ 246 (260)
T PRK10744 243 FTKP 246 (260)
T ss_pred HhCC
Confidence 7543
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=370.38 Aligned_cols=217 Identities=28% Similarity=0.458 Sum_probs=181.8
Q ss_pred EEEEEEEEEecCCC--CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH---Hh
Q 000774 909 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 983 (1293)
Q Consensus 909 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 983 (1293)
|+++|++++|++.. .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 26999999999999999999999999999999999999999999999999988765543 47
Q ss_pred hhceEEcccccccc-ccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 000774 984 KILGIIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1059 (1293)
Q Consensus 984 ~~i~~v~Q~~~lf~-~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 1059 (1293)
+.++|+||++.+|. .|+++|+.+.. .....+. ...+.+.++.+ +++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI-----EERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 78999999999997 59999986421 1111111 11233444443 45555556667899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1060 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1060 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999998753 7899999999999876 99999999999999999988864
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=391.93 Aligned_cols=216 Identities=21% Similarity=0.337 Sum_probs=182.1
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .+++|||
T Consensus 4 l~i~~l~~~~~~~--~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~~ 79 (369)
T PRK11000 4 VTLRNVTKAYGDV--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVGM 79 (369)
T ss_pred EEEEEEEEEeCCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEEE
Confidence 8999999999753 69999999999999999999999999999999999999999999999999987665 3567999
Q ss_pred Eccccccccc-cHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 989 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
+||++.+|.. |+++|+.+... ....+.. ..+.+.++.+ |++...+....+||||||||++|||||+.+|
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~-----~~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~~P 152 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEIN-----QRVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999975 99999975321 1211111 1122333332 4444455566789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCC
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1135 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1135 (1293)
++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++...+.
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~ 226 (369)
T PRK11000 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (369)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999998653 7899999999999876 99999999999999999999986543
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=372.71 Aligned_cols=218 Identities=28% Similarity=0.438 Sum_probs=183.7
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-----CcceEEECCeecCCCChHHH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLMDL 982 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~~~~~~ 982 (1293)
.++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+...+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 38999999999753 699999999999999999999999999999999999984 69999999999988787788
Q ss_pred hhhceEEccccccc-cccHhhhcCCCCC---C--C----HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 983 RKILGIIPQSPVLF-SGTVRFNLDPFSE---H--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 983 r~~i~~v~Q~~~lf-~~ti~~nl~~~~~---~--~----~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
|+.|||+||++.+| ..|+++|+.+... . . ++++.++++..++.+. ++...+....+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDE-------VKDRLDAPAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcc-------hhhhhcCCcccCCHHHHH
Confidence 88999999999766 5699999964211 0 1 1223334444333221 122345566789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999997668999999999999865 9999999999999999999987
Q ss_pred hcC
Q 000774 1132 SNE 1134 (1293)
Q Consensus 1132 ~~~ 1134 (1293)
+..
T Consensus 234 ~~~ 236 (250)
T PRK14247 234 TNP 236 (250)
T ss_pred cCC
Confidence 543
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=379.59 Aligned_cols=217 Identities=28% Similarity=0.403 Sum_probs=181.5
Q ss_pred EEEEEEEEEecCCC---CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCC----CChHH
Q 000774 909 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----FGLMD 981 (1293)
Q Consensus 909 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~----~~~~~ 981 (1293)
++++|++++|++.. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 369999999999999999999999999999999999999999999999999853 34556
Q ss_pred HhhhceEEcccc--ccccccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 000774 982 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 1055 (1293)
Q Consensus 982 ~r~~i~~v~Q~~--~lf~~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~ 1055 (1293)
.|+.||||||+| .+|+.|+++|+.+.. ..+.++..+ .+.+.++.+ |++ ......+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQ-----KAREMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 788899999998 578889999996421 112222211 122333432 454 3345667889999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1056 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
|||||+.+|++|||||||++||+.+...+.+.|+++.. +.|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999999866 99999999999999999999874
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=373.19 Aligned_cols=219 Identities=23% Similarity=0.432 Sum_probs=184.3
Q ss_pred ccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC-----CCcceEEECCeecCC--CCh
Q 000774 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGL 979 (1293)
Q Consensus 907 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~ 979 (1293)
..|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .++
T Consensus 12 ~~l~i~nl~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEECCE--EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 459999999999753 69999999999999999999999999999999999987 689999999999853 456
Q ss_pred HHHhhhceEEccccccccccHhhhcCCCCC---CC---HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 000774 980 MDLRKILGIIPQSPVLFSGTVRFNLDPFSE---HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1053 (1293)
Q Consensus 980 ~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~---~~---~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 1053 (1293)
..+|+.++|+||++.+|..|+++|+.+... .. ++++.++++.+++.. +++...+....+||||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHHH
Confidence 677889999999999998899999975321 11 122333344333221 23344566678899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeC-----------CeE
Q 000774 1054 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDS-----------GRV 1121 (1293)
Q Consensus 1054 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~-----------G~i 1121 (1293)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++ |++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~ 242 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL 242 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence 99999999999999999999999999999999999988667899999999999876 999999996 678
Q ss_pred eeecChhhhhhcC
Q 000774 1122 LEYDTPEELLSNE 1134 (1293)
Q Consensus 1122 ~~~g~~~el~~~~ 1134 (1293)
++.|+++++....
T Consensus 243 ~~~~~~~~~~~~~ 255 (269)
T PRK14259 243 VEFNETKKIFNSP 255 (269)
T ss_pred EEeCCHHHHHhCc
Confidence 9999999997543
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=382.68 Aligned_cols=216 Identities=29% Similarity=0.443 Sum_probs=182.3
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ....|+++|
T Consensus 4 ~i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCCe--EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 48999999999753 699999999999999999999999999999999999999999999999998653 356788999
Q ss_pred EEcccccccc-ccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000774 988 IIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1063 (1293)
Q Consensus 988 ~v~Q~~~lf~-~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 1063 (1293)
|+||++.++. .|+++|+.++. ..+..+..+. +.+.++. .++.........+||||||||++|||||+.+
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~--~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEF--ARLESKADVRVALLSGGMKRRLTLARALIND 153 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--CCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 9999999885 59999986321 1222222211 2233333 2454555566678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1064 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1064 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
|++|||||||+|||+.+.+.+++.|+++. .++|||++||+++++.. ||||++|++|++++.|+++++...
T Consensus 154 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999875 47899999999999976 999999999999999999998754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=366.38 Aligned_cols=208 Identities=28% Similarity=0.465 Sum_probs=176.2
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++|++++|++. ++|+|+||++.+||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++|
T Consensus 1 i~~~~~~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECCE--EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEEE
Confidence 4789999999753 69999999999999999999999999999999999999999999999998865 33566788999
Q ss_pred Eccccccccc-cHhhhcCCCC---CCC----HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 989 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~---~~~----~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
+||++.++.. |+++|+.+.. ... ++++.++++.. |++........+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFV-----------GLLEAADRLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCHHHhhCChhhCCHHHHHHHHHHHHH
Confidence 9999998875 9999986421 111 11233333333 344444555678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhh
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1130 (1293)
+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. |||+++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999998653 6899999999999876 999999999999999988775
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=373.31 Aligned_cols=219 Identities=26% Similarity=0.427 Sum_probs=184.2
Q ss_pred CccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-----CcceEEECCeecCC--CC
Q 000774 906 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FG 978 (1293)
Q Consensus 906 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~ 978 (1293)
.+.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGEK--QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECCE--EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 3469999999999753 699999999999999999999999999999999999975 89999999999864 34
Q ss_pred hHHHhhhceEEccccccccccHhhhcCCCC---CC--C----HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChh
Q 000774 979 LMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 1049 (1293)
Q Consensus 979 ~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~--~----~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgG 1049 (1293)
...+|+.++|+||++.+|..|+.+|+.+.. .. . ++++.++++..++.+.+ ....+..+.+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-------KDRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHH
Confidence 556788999999999999889999996421 11 1 12234444444432221 12345567789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChh
Q 000774 1050 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1128 (1293)
Q Consensus 1050 qkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~ 1128 (1293)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++..++|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999987667899999999999876 9999999999999999999
Q ss_pred hhhhc
Q 000774 1129 ELLSN 1133 (1293)
Q Consensus 1129 el~~~ 1133 (1293)
++...
T Consensus 248 ~~~~~ 252 (267)
T PRK14235 248 KMFTN 252 (267)
T ss_pred HHHhC
Confidence 98754
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=369.07 Aligned_cols=215 Identities=29% Similarity=0.467 Sum_probs=182.5
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHH-hhhce
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 987 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 987 (1293)
++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCCE--EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 4789999999743 69999999999999999999999999999999999999999999999999887766553 46799
Q ss_pred EEccccccccc-cHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1063 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 1063 (1293)
|+||++.+|.. |+++|+.+... ....+. ...+.++++.+ |++........+||||||||++|||||+.+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKER-----EEKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999986 99999864211 111111 11233445543 566666777789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1064 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1064 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 99999999999999999999999998865 47899999999998776 99999999999999999988764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=378.97 Aligned_cols=218 Identities=22% Similarity=0.349 Sum_probs=180.4
Q ss_pred EEEEEEEEEecCCC---CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCC---------
Q 000774 909 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--------- 976 (1293)
Q Consensus 909 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~--------- 976 (1293)
|+++||+++|++.. .++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999996432 259999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CChHHHhhhceEEcccc--ccccccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcc
Q 000774 977 ---------------FGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD 1036 (1293)
Q Consensus 977 ---------------~~~~~~r~~i~~v~Q~~--~lf~~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~ 1036 (1293)
.+...+|+.||||||+| .+|..|+++|+.+.. ....+++.+ .+.+.++. .|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~--~gL~ 155 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKK-----RAAKYIEL--VGLD 155 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHH--cCCC
Confidence 13456788999999986 578789999997532 122222211 12233333 2443
Q ss_pred -hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEE
Q 000774 1037 -AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRI 1113 (1293)
Q Consensus 1037 -~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i 1113 (1293)
...+....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+|||+++.+.. ||||
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence 34556678899999999999999999999999999999999999999999998865 47899999999998765 9999
Q ss_pred EEEeCCeEeeecChhhhhhc
Q 000774 1114 LLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1114 ~vl~~G~i~~~g~~~el~~~ 1133 (1293)
++|++|++++.|+++++.+.
T Consensus 236 ~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 236 IFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 99999999999999998753
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=372.55 Aligned_cols=217 Identities=28% Similarity=0.421 Sum_probs=182.1
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-----CcceEEECCeecC--CCChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA--KFGLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~--~~~~~ 980 (1293)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCCe--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 38999999999753 699999999999999999999999999999999999997 4999999999986 44556
Q ss_pred HHhhhceEEccccccccc-cHhhhcCCCC---CC--CH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhH
Q 000774 981 DLRKILGIIPQSPVLFSG-TVRFNLDPFS---EH--SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1050 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~-ti~~nl~~~~---~~--~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGq 1050 (1293)
.+|++++|+||++.+|.. |+.+|+.+.. .. .. +.+.++++..++.+. +.........+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE-------VKDRLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccc-------hhhhhccChhhCCHHH
Confidence 678899999999999976 9999996421 11 11 123333333332211 1233455677899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhh
Q 000774 1051 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1129 (1293)
Q Consensus 1051 kqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 1129 (1293)
|||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999997667999999999999876 99999999999999999999
Q ss_pred hhhc
Q 000774 1130 LLSN 1133 (1293)
Q Consensus 1130 l~~~ 1133 (1293)
+.+.
T Consensus 235 ~~~~ 238 (253)
T PRK14267 235 VFEN 238 (253)
T ss_pred HHhC
Confidence 8754
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=367.96 Aligned_cols=215 Identities=28% Similarity=0.443 Sum_probs=183.0
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .++.++|
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGAR--RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred EEEEeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 7899999999643 699999999999999999999999999999999999999999999999998776543 4468999
Q ss_pred Eccccccc-cccHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 989 IPQSPVLF-SGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 989 v~Q~~~lf-~~ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
+||++.++ ..|+++|+..... ....+.. ..+.++++.+ |++...+....+||||||||++|||||+++|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999875 5699999964321 1111111 1234455543 6666667777899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhc
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9999999999999999999999999875 37899999999999978999999999999999999988754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=365.98 Aligned_cols=206 Identities=28% Similarity=0.407 Sum_probs=172.4
Q ss_pred EEEEEEEEEecCCC--CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH----H
Q 000774 909 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD----L 982 (1293)
Q Consensus 909 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~----~ 982 (1293)
|+++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++.. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997521 36999999999999999999999999999999999999999999999999988766432 3
Q ss_pred hhhceEEccccccccc-cHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000774 983 RKILGIIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1058 (1293)
Q Consensus 983 r~~i~~v~Q~~~lf~~-ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 1058 (1293)
++.++|+||++.+|.. |+++|+.+... ....+. ...+.+.++.+ |++...+..+.+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5679999999999876 99999864221 111111 11233444443 5666666677889999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhccCEEEEEeCCeE
Q 000774 1059 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRV 1121 (1293)
Q Consensus 1059 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i 1121 (1293)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++.+..||++++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998754 7899999999999878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=352.70 Aligned_cols=220 Identities=28% Similarity=0.449 Sum_probs=191.1
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHH-hhhce
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 987 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 987 (1293)
+++++++++|++- .+++||||++++||++||+|||||||||++|+|+|+|+|++|+|.++|.||..++++.. |..|+
T Consensus 5 L~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 6899999999864 69999999999999999999999999999999999999999999999999999998886 44599
Q ss_pred EEccccccccc-cHhhhcCCCCC------------CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFSE------------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1054 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~~------------~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 1054 (1293)
--+|.+.+|++ ||.||+..... ....+..++.++ +.+.++. .||+...++...+||+|||+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~--A~~~Le~--vgL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARER--ARELLEF--VGLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHH--HHHHHHH--cCCchhhcchhhcCChhHhHHH
Confidence 99999999976 99999853210 011112222222 3455555 4788888889999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1055 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1055 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
.|||||+.+|++|+||||.+||.+.....+.+.|+++.+ +.|+++|-|||+.+.. ||||+||+.|+++++|+|+|..
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 999999999999999999999999999999999999875 4899999999999988 9999999999999999999998
Q ss_pred hcC
Q 000774 1132 SNE 1134 (1293)
Q Consensus 1132 ~~~ 1134 (1293)
+++
T Consensus 239 ~dp 241 (250)
T COG0411 239 NNP 241 (250)
T ss_pred cCH
Confidence 653
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=361.91 Aligned_cols=198 Identities=27% Similarity=0.454 Sum_probs=167.7
Q ss_pred EEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEE
Q 000774 910 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 989 (1293)
Q Consensus 910 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 989 (1293)
+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 368999999752 369999999999999999999999999999999999999999999999998853 4567789999
Q ss_pred cccc--ccccccHhhhcCCCCCC---CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 990 PQSP--VLFSGTVRFNLDPFSEH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 990 ~Q~~--~lf~~ti~~nl~~~~~~---~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
||++ .+|..|+++|+.+.... .++++.++++..++. .........||||||||++|||||+.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLY-----------ALKERHPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCc-----------hhcCCCchhCCHHHHHHHHHHHHHHhCC
Confidence 9998 36678999999753211 123445555554443 3344455689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEe
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVL 1122 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~ 1122 (1293)
++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999874 57899999999999876 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=376.30 Aligned_cols=217 Identities=29% Similarity=0.513 Sum_probs=182.3
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecC--CCChHHHhhh
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 985 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~ 985 (1293)
.|+++|++++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 38999999999632 36999999999999999999999999999999999999999999999999984 3345667889
Q ss_pred ceEEcccc--ccccccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 986 LGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 986 i~~v~Q~~--~lf~~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
+||+||++ .+|+.|+++|+.+.. ..+..+..+. +.+.++. .|+....+..+.+||||||||++|||||
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~--~gL~~~~~~~~~~LS~G~~qrl~laraL 156 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKR--TGIEHLKDKPTHCLSFGQKKRVAIAGVL 156 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHH--CCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 99999998 567889999996421 1122221111 1222333 2444555667789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 157 ~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999998754 7899999999999875 99999999999999999999875
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=366.96 Aligned_cols=240 Identities=34% Similarity=0.621 Sum_probs=202.3
Q ss_pred HHHHHhhhhhcccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 000774 260 RMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 339 (1293)
Q Consensus 260 Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~ 339 (1293)
.+.+++..+++. ....+.....+.|+++|+++.. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p 89 (282)
T cd03291 16 GFGELLEKAKQE-NNDRKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP 89 (282)
T ss_pred HHHHHHhccccc-ccccccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 455666654432 1222233345579999999952 4699999999999999999999999999999999999999
Q ss_pred CCCCceeecCcEEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000774 340 VSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 419 (1293)
Q Consensus 340 ~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRi 419 (1293)
++| .+.+.+.|+|++|++.+++.||+||+.++......++...++.+++.+.++.++.+.++.+++.+..||||||||+
T Consensus 90 ~~G-~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv 168 (282)
T cd03291 90 SEG-KIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARI 168 (282)
T ss_pred CCc-EEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHH
Confidence 998 6677888999999999998899999998754444455667777888888888998888889999999999999999
Q ss_pred HHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHhhc
Q 000774 420 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 420 alAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
+|||||+.+|++|||||||++||+.+.+.+.+.+++...+++|+|++||+++.+..||++++|++|+++..|+++++.+.
T Consensus 169 ~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 169 SLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999998887665544567999999999999988999999999999999999998765
Q ss_pred cHHHHHH
Q 000774 500 GELFQKL 506 (1293)
Q Consensus 500 ~~~~~~~ 506 (1293)
...+...
T Consensus 249 ~~~~~~~ 255 (282)
T cd03291 249 RPDFSSK 255 (282)
T ss_pred chHHHHH
Confidence 4444433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=361.51 Aligned_cols=202 Identities=27% Similarity=0.428 Sum_probs=173.1
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 478999999964 3699999999999999999999999999999999999999999999999988654 456788999
Q ss_pred Ecccccccc-ccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 989 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 989 v~Q~~~lf~-~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
+||++.+|. .|+++|+.++. ...++++.++++..++.+ ........||||||||++||||++.+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKD-----------SAKKKVKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-----------HHhhhHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998885 69999986431 123344555555555443 334445679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999865 47899999999999876 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=368.30 Aligned_cols=220 Identities=21% Similarity=0.367 Sum_probs=184.9
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHH-hhhce
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 987 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 987 (1293)
|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 3 i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDGF--KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 7899999999753 69999999999999999999999999999999999999999999999999887776544 45699
Q ss_pred EEccccccccc-cHhhhcCCCCCCCHH---H---HHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFSEHSDA---D---LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~~~~~~---~---~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
|+||++.+|.+ |+++|+.+....... . .........+.+.++.+ |++.........||||||||++||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999986 999999753211000 0 00001112234455543 566666677788999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
+.+|++|||||||++||+.+.+.+++.|+++..++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 9999999999999999999999999999998777999999999999976 99999999999999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=366.47 Aligned_cols=212 Identities=25% Similarity=0.392 Sum_probs=177.1
Q ss_pred cEEEEEEEEEecCCC--CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH---H
Q 000774 908 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 982 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 982 (1293)
.++++||+++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999996432 36999999999999999999999999999999999999999999999999998877654 3
Q ss_pred h-hhceEEccccccccc-cHhhhcCCC---CCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 000774 983 R-KILGIIPQSPVLFSG-TVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1057 (1293)
Q Consensus 983 r-~~i~~v~Q~~~lf~~-ti~~nl~~~---~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 1057 (1293)
| +.++|+||++.+|.. |+++|+.+. ......+.. ..+.+.++.+ |++........+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-----SRALEMLAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 579999999998875 999998641 111111111 1123344442 555555666788999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhccCEEEEEeCCeEeeecC
Q 000774 1058 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1126 (1293)
Q Consensus 1058 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~ 1126 (1293)
||++.+|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+..+|++++|++|++++.|.
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999874 4789999999999998889999999999998765
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=374.17 Aligned_cols=217 Identities=20% Similarity=0.326 Sum_probs=182.1
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChH---HHhh
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRK 984 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~ 984 (1293)
.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. ..++
T Consensus 7 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGNR--CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 48999999999643 699999999999999999999999999999999999999999999999998776543 3467
Q ss_pred hceEEccccccccc-cHhhhcCCC----CCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 000774 985 ILGIIPQSPVLFSG-TVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1059 (1293)
Q Consensus 985 ~i~~v~Q~~~lf~~-ti~~nl~~~----~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 1059 (1293)
.++|+||++.+|.. |+.+|+.+. ......+.. ..+.+.++. .|+.........+||||||||++||||
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~--~gl~~~~~~~~~~LSgGq~qrv~lara 157 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH-----STVMMKLEA--VGLRGAAKLMPSELSGGMARRAALARA 157 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHH--cCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999976 999998631 111111111 112233333 245445556677899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1060 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1060 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 158 IALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999998753 6899999999999877 999999999999999999998764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=363.93 Aligned_cols=209 Identities=31% Similarity=0.521 Sum_probs=174.7
Q ss_pred EEEEEEEEEecCCC--CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhc
Q 000774 909 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 986 (1293)
Q Consensus 909 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 986 (1293)
++++||+++|++.. +++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+..+|+.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999997531 159999999999999999999999999999999999999999999999999875 455678899
Q ss_pred eEEccccccccc-cHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 987 GIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 987 ~~v~Q~~~lf~~-ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
+|+||++.+|.. |+++|+.+.. .....+.. ..+.+.++.+ |++........+||||||||++||||++.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELT-----ARLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 999999999885 9999986321 11111111 1123334432 45555566677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999875 47899999999999876 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=373.48 Aligned_cols=212 Identities=25% Similarity=0.451 Sum_probs=182.0
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|++++|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999643 259999999999999999999999999999999999999999999999999987777778889999
Q ss_pred Eccccc--cccccHhhhcCCCC---CCCHH----HHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 000774 989 IPQSPV--LFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1059 (1293)
Q Consensus 989 v~Q~~~--lf~~ti~~nl~~~~---~~~~~----~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 1059 (1293)
+||++. +|+.|+++|+.+.. ..+.+ .+.++++.. |+.......+..||||||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHML-----------GLEELRDRVPHHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHC-----------CChhHhcCCcccCCHHHHHHHHHHHH
Confidence 999983 67789999996421 12222 223333333 34444455567899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1060 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1060 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++++.. ||||++|++|++++.|+++++.+
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 9999999999999999999999999999998753 7899999999999865 99999999999999999999975
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=387.91 Aligned_cols=223 Identities=30% Similarity=0.428 Sum_probs=182.7
Q ss_pred EEEEEEEEEecCCC----------------------CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcce
Q 000774 909 IKFEDVVLRYRPEL----------------------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966 (1293)
Q Consensus 909 i~~~~v~~~y~~~~----------------------~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~ 966 (1293)
|+++||++.|++.. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+
T Consensus 5 i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~ 84 (400)
T PRK10070 5 LEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQ 84 (400)
T ss_pred EEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCE
Confidence 67777777776531 13799999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCChHHH----hhhceEEccccccccc-cHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchh
Q 000774 967 ILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQ 1038 (1293)
Q Consensus 967 I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~-ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~ 1038 (1293)
|.++|.++...+...+ |++++|+||++.+|.. |+++|+.+.. .....+.. ..+.+.++. .|++..
T Consensus 85 I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~-----~~~~e~L~~--~gL~~~ 157 (400)
T PRK10070 85 VLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERR-----EKALDALRQ--VGLENY 157 (400)
T ss_pred EEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCCChh
Confidence 9999999988776554 3579999999999965 9999997421 11111111 112233333 245455
Q ss_pred hhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEE
Q 000774 1039 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILL 1115 (1293)
Q Consensus 1039 ~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~v 1115 (1293)
......+||||||||++|||||+.+|+||||||||++||+.+++.+++.|+++. .++|+|+|||+++++.. ||+|++
T Consensus 158 ~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~v 237 (400)
T PRK10070 158 AHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAI 237 (400)
T ss_pred hhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEE
Confidence 556667899999999999999999999999999999999999999999999864 37899999999999866 999999
Q ss_pred EeCCeEeeecChhhhhhcCCChH
Q 000774 1116 LDSGRVLEYDTPEELLSNEGSSF 1138 (1293)
Q Consensus 1116 l~~G~i~~~g~~~el~~~~~~~~ 1138 (1293)
|++|++++.|+++++...+...|
T Consensus 238 L~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 238 MQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred EECCEEEecCCHHHHHhCcccHH
Confidence 99999999999999986554434
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=362.43 Aligned_cols=202 Identities=27% Similarity=0.446 Sum_probs=172.8
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++|++++|++. ++++|+||++++| ++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 4789999999653 6999999999999 99999999999999999999999999999999999987765 667889999
Q ss_pred Eccccccccc-cHhhhcCCCC---CCC----HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 989 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~---~~~----~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
+||++.+|.. |+++|+.+.. ... ++++.++++..++. ........+||||||||++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-----------DRAKKKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-----------HHHhCchhhCCHHHHHHHHHHHHH
Confidence 9999998876 9999986421 111 12233344444433 333445578999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
+.+|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. |||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998767999999999999876 9999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=375.77 Aligned_cols=217 Identities=29% Similarity=0.397 Sum_probs=179.1
Q ss_pred EEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHH----hhh
Q 000774 910 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKI 985 (1293)
Q Consensus 910 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~----r~~ 985 (1293)
.++|+++.|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQT--VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCCc--eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 567888888754 69999999999999999999999999999999999999999999999999987665443 357
Q ss_pred ceEEcccccccc-ccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 000774 986 LGIIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 1061 (1293)
Q Consensus 986 i~~v~Q~~~lf~-~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 1061 (1293)
++|+||++.+|. .|+++|+.+.. .....+.. ..+.+.++.+ |++........+||||||||++|||||+
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAERE-----ERAAEALELV--GLEGWEHKYPDELSGGMQQRVGLARALA 176 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 999999999885 59999986421 11111111 1122333332 4444455556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCC
Q 000774 1062 RRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1135 (1293)
Q Consensus 1062 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1135 (1293)
++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+...
T Consensus 177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 253 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPA 253 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcC
Confidence 99999999999999999999999999998743 7899999999999866 99999999999999999999986543
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=370.18 Aligned_cols=218 Identities=24% Similarity=0.394 Sum_probs=182.1
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC--C---CcceEEECCeecCC--CChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAK--FGLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~--p---~~G~I~i~g~~i~~--~~~~ 980 (1293)
.|+++|+++.|++. ++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|.++|.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQH--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECCe--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 48999999999753 69999999999999999999999999999999999997 3 59999999999863 3445
Q ss_pred HHhhhceEEccccccccccHhhhcCCCCC----CCHHH----HHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~----~~~~~----~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
.+|+.++|+||++.+|..|+++|+.+... ..+++ +.++++..++.+. +.......+.+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDE-------VKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhhhhhCCcccCCHHHHH
Confidence 67889999999999998899999964321 11111 2222333332221 123345667789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++|||||+.+|+||||||||++||+.+...+.+.|++...++|+|+|||+++.+.. |||+++|++|++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999998667999999999999876 9999999999999999999987
Q ss_pred hcC
Q 000774 1132 SNE 1134 (1293)
Q Consensus 1132 ~~~ 1134 (1293)
++.
T Consensus 243 ~~~ 245 (259)
T PRK14274 243 SNP 245 (259)
T ss_pred hCC
Confidence 643
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=360.25 Aligned_cols=204 Identities=29% Similarity=0.522 Sum_probs=179.9
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCce-------------eecCc
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA-------------VIRGT 350 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~-------------~~~~~ 350 (1293)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|.+. .++++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 58999999999753 6899999999999999999999999999999999999999998531 13567
Q ss_pred EEEEcCCc--cccCccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000774 351 VAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 421 (1293)
Q Consensus 351 i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRial 421 (1293)
||||+|+| ++|..||.|.++||.. .+. +++.++++.+++.+..+..| .+|||||||||||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 99999999 6789999999999943 232 45677888999988866655 5899999999999
Q ss_pred HHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhhc
Q 000774 422 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 422 Aral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
|.+|+.+|++||||||||+||+...+.+.+.+.+...+ |+|+|++|||++.+.. |||+++|++|+++.+|+++++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999877665555 6899999999999876 999999999999999999888765
Q ss_pred c
Q 000774 500 G 500 (1293)
Q Consensus 500 ~ 500 (1293)
.
T Consensus 230 ~ 230 (235)
T COG1122 230 A 230 (235)
T ss_pred h
Confidence 3
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=367.32 Aligned_cols=215 Identities=26% Similarity=0.437 Sum_probs=184.1
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH-Hhhhce
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 987 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~ 987 (1293)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++.. .|+.++
T Consensus 4 l~~~~l~~~~~~~--~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 4 LTAKNLAKAYKGR--RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred EEEeCcEEEeCCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 8899999999753 6999999999999999999999999999999999999999999999999998777644 467899
Q ss_pred EEccccccccc-cHhhhcCCCCCC----CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFSEH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~~~----~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
|+||++.+|.. |+++|+...... +.++ ....+.++++.+ |++.........||||||||++||||++.
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ-----REDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHH-----HHHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 99999998875 999999753211 1111 112334555554 56566667778899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999998865 47899999999988866 99999999999999999999864
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=371.15 Aligned_cols=218 Identities=28% Similarity=0.418 Sum_probs=181.8
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-----CcceEEECCeecCCCC--hH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFG--LM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~~--~~ 980 (1293)
.|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 12 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 49999999999743 699999999999999999999999999999999999985 7999999999986432 34
Q ss_pred HHhhhceEEccccccccccHhhhcCCCC---CCCHH----HHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1053 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~~~~----~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 1053 (1293)
.+|+.++|+||++.+|..|+++|+.+.. ....+ .+.++++.+++.+ .+..........||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD-------ETSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc-------chhhhhcCChhhCCHHHHHH
Confidence 5678899999999999899999996421 11221 1233333333211 11233455677899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1054 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1054 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987667999999999999876 99999999999999999999975
Q ss_pred cC
Q 000774 1133 NE 1134 (1293)
Q Consensus 1133 ~~ 1134 (1293)
..
T Consensus 243 ~~ 244 (258)
T PRK14268 243 NP 244 (258)
T ss_pred CC
Confidence 43
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=373.01 Aligned_cols=212 Identities=25% Similarity=0.382 Sum_probs=181.8
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 11 ~l~i~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPGR--TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECCE--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 48999999999643 6999999999999999999999999999999999999999999999999998878788888999
Q ss_pred EEccccccccc-cHhhhcCCCCC--------C---CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFSE--------H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1055 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~~--------~---~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 1055 (1293)
|+||++.++.. |+.+|+.+... . .++++.++++.++ ++........+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVG-----------LKPLAHRLVDSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcC-----------CHHHhcCCcccCCHHHHHHHH
Confidence 99999877655 99999964211 0 1122333444433 333444455689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1056 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 99999999999999999999999999999999998742 7899999999999866 99999999999999999988864
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=366.53 Aligned_cols=216 Identities=27% Similarity=0.461 Sum_probs=182.5
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCC--------hH
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--------LM 980 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~--------~~ 980 (1293)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..
T Consensus 4 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 4 IEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred EEEeceEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 8999999999743 6999999999999999999999999999999999999999999999999986532 24
Q ss_pred HHhhhceEEcccccccc-ccHhhhcCCC----CCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 000774 981 DLRKILGIIPQSPVLFS-GTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1055 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~-~ti~~nl~~~----~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 1055 (1293)
.+|+.++|+||++.+|. .|+++|+.+. .....++.. ..+.+.++.+ |++...+..+.+||||||||++
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEAT-----ARARELLAKV--GLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCcchhhCChhhCChHHHHHHH
Confidence 56788999999999886 5999998642 111111111 1123444443 5555566677899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1056 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
|||||+.+|++|||||||++||+.+++.+.+.|+++.. ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999998754 7899999999999876 999999999999999999998754
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=381.18 Aligned_cols=226 Identities=23% Similarity=0.388 Sum_probs=186.1
Q ss_pred cEEEEEEEEEecCC-----------CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCC
Q 000774 908 SIKFEDVVLRYRPE-----------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 976 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~-----------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~ 976 (1293)
.++++|++++|+.. ..++++||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 48999999999631 2358999999999999999999999999999999999999999999999999988
Q ss_pred CChHH---HhhhceEEcccc--cccc-ccHhhhcCC----CC-CCCHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCC
Q 000774 977 FGLMD---LRKILGIIPQSP--VLFS-GTVRFNLDP----FS-EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGE 1044 (1293)
Q Consensus 977 ~~~~~---~r~~i~~v~Q~~--~lf~-~ti~~nl~~----~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~ 1044 (1293)
.+... +|++|+||||+| .++. .|+.+|+.. +. ..+.++..+. +.+.++.+ |++ ......+.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~-----~~~~l~~v--gl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDR-----VKAMMLKV--GLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHc--CCChHHhcCCcc
Confidence 77544 567899999998 4674 599999852 11 1232222211 12333332 332 23466678
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeE
Q 000774 1045 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRV 1121 (1293)
Q Consensus 1045 ~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 1121 (1293)
+||||||||++|||||+.+|++||+||||++||+.+...+.+.|+++.+ +.|+|+||||++.+.. ||||++|.+|+|
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999998753 7899999999999987 999999999999
Q ss_pred eeecChhhhhhcCCChHHH
Q 000774 1122 LEYDTPEELLSNEGSSFSK 1140 (1293)
Q Consensus 1122 ~~~g~~~el~~~~~~~~~~ 1140 (1293)
++.|+++++.++....|.+
T Consensus 241 ve~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 241 VELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EEEcCHHHHHcCCCCHHHH
Confidence 9999999998765445554
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=372.08 Aligned_cols=216 Identities=28% Similarity=0.519 Sum_probs=182.0
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCC-hHHHhhhce
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG-LMDLRKILG 987 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~-~~~~r~~i~ 987 (1293)
++++|++++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999643 35999999999999999999999999999999999999999999999999997765 356788899
Q ss_pred EEccccc--cccccHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 988 IIPQSPV--LFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 988 ~v~Q~~~--lf~~ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
|+||+|. +++.|+++|+.+... .+..+..+ .+.+.++. .|++...+..+..||||||||++|||||+.
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~--~gl~~~~~~~~~~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRK-----RVDRALAE--IGLEKYRHRSPKTLSGGQGQCVALAGILTM 153 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHH--CCCHHHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 9999985 566799999975321 11111111 12233333 255555666678899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhh
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
+|+||||||||++||+.+...+++.|+++. .++|+|++||+++.+..||||++|++|++++.|+++++..
T Consensus 154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999998865 4789999999999997799999999999999999999864
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=357.22 Aligned_cols=199 Identities=28% Similarity=0.423 Sum_probs=180.0
Q ss_pred EEEEEEEEEecCCC---CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhh
Q 000774 909 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 985 (1293)
Q Consensus 909 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 985 (1293)
++++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 47899999997542 3699999999999999999999999999999999999999999999998 6
Q ss_pred ceEEccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000774 986 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1065 (1293)
Q Consensus 986 i~~v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 1065 (1293)
|+|+||+|.+|+.|+++|+.+.....+++..++++.+++.+++..+|.|+++.+...+.+||||||||++|||||+.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998654445556777888888999999999999999998999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH-HHHHHc-CCcEEEEEecCcchhhccCEEEEEeCCe
Q 000774 1066 ILVLDEATAAVDVRTDALIQK-TIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGR 1120 (1293)
Q Consensus 1066 iLlLDEpTs~lD~~t~~~i~~-~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~ 1120 (1293)
++||||||++||+++.+.+.+ .+++.. .++|||++||+++.+..||++++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999998887 466554 3689999999999988899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=349.88 Aligned_cols=178 Identities=33% Similarity=0.574 Sum_probs=164.2
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++|++++|+...+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 478999999975433699999999999999999999999999999999999999999999999988665 5667888999
Q ss_pred EccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000774 989 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 1068 (1293)
Q Consensus 989 v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLl 1068 (1293)
+||++.+|+.|+++|+ ..+||||||||++||||++.+|++||
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999886 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeec
Q 000774 1069 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1069 LDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g 1125 (1293)
|||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999886789999999999999889999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=372.16 Aligned_cols=218 Identities=27% Similarity=0.462 Sum_probs=184.1
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 48999999999643346999999999999999999999999999999999999999999999999998777778888999
Q ss_pred EEcccc--ccccccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 988 IIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 988 ~v~Q~~--~lf~~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
|+||++ .++..|+++|+.+.. ....++..+ .+.+.++.+ |++...+....+||||||||++|||||+.
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLAL 159 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 999998 345679999996421 122222111 123333332 45555566678899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhh
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.|+++++.+
T Consensus 160 ~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 160 NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999998753 489999999999987799999999999999999988864
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=365.97 Aligned_cols=216 Identities=26% Similarity=0.438 Sum_probs=183.3
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCC--hHHHhhhc
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLRKIL 986 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~--~~~~r~~i 986 (1293)
++++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~~--~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 7899999999743 6999999999999999999999999999999999999999999999999987643 34667889
Q ss_pred eEEcccccccc-ccHhhhcCCCC----CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 000774 987 GIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 1061 (1293)
Q Consensus 987 ~~v~Q~~~lf~-~ti~~nl~~~~----~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 1061 (1293)
+|+||++.+|. .|+++|+.+.. .....+.. ..+.+.++.+ |++...+.....||||||||++||||++
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAE-----KQARELLAKV--GLAERAHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHHh
Confidence 99999998886 59999996421 11111111 1233444443 5666667777889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1062 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1062 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 9999999999999999999999999999865 47999999999999876 999999999999999999998753
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=373.76 Aligned_cols=214 Identities=27% Similarity=0.447 Sum_probs=183.6
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCc---ceEEECCeecCCCChHHHhh
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER---GRILIDGFDIAKFGLMDLRK 984 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~---G~I~i~g~~i~~~~~~~~r~ 984 (1293)
.|+++|++++|++...++++|+||+|++||++||+||||||||||+++|+|+++|++ |+|.++|.++...+...+++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 589999999996533369999999999999999999999999999999999999998 89999999998777777888
Q ss_pred hceEEccccc--cccccHhhhcCCCC---CCCHHH----HHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 000774 985 ILGIIPQSPV--LFSGTVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1055 (1293)
Q Consensus 985 ~i~~v~Q~~~--lf~~ti~~nl~~~~---~~~~~~----~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 1055 (1293)
+|||+||++. ++..|+.+|+.+.. ..+.++ +.++++.+ |++...+....+||||||||++
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LS~G~~qrv~ 153 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADV-----------GMLDYIDSEPANLSGGQKQRVA 153 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC-----------CChhHhcCCcccCCHHHHHHHH
Confidence 9999999983 55779999997421 122222 33333333 4444555566789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhh
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1056 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.. ++|||++||+++.+..|||+++|++|++++.|+++++..
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998753 789999999999997799999999999999999999875
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=368.68 Aligned_cols=217 Identities=29% Similarity=0.495 Sum_probs=182.0
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCC----------
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---------- 978 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~---------- 978 (1293)
|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCCe--eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 4789999999743 6999999999999999999999999999999999999999999999999986543
Q ss_pred ---hHHHhhhceEEcccccccc-ccHhhhcCCCC----CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhH
Q 000774 979 ---LMDLRKILGIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1050 (1293)
Q Consensus 979 ---~~~~r~~i~~v~Q~~~lf~-~ti~~nl~~~~----~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGq 1050 (1293)
...+|+.++|+||++.+|. .|+.+|+.... .....+.. ..+.+.++.+ |++...+..+..|||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~ 151 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE-----KRAMELLDMV--GLADKADHMPAQLSGGQ 151 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhHhhcChhhcCHHH
Confidence 2356788999999999885 69999996421 11111111 1233444443 55555666678899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecCh
Q 000774 1051 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1127 (1293)
Q Consensus 1051 kqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1127 (1293)
|||++|||||+.+|++|||||||++||+.++..+.+.|++..+ +.|+|+|||+++.+.. |||+++|++|++++.|++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T TIGR03005 152 QQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKP 231 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998653 7899999999999865 999999999999999999
Q ss_pred hhhhhcC
Q 000774 1128 EELLSNE 1134 (1293)
Q Consensus 1128 ~el~~~~ 1134 (1293)
+++.+..
T Consensus 232 ~~~~~~~ 238 (252)
T TIGR03005 232 DEIFRQP 238 (252)
T ss_pred HHHhcCC
Confidence 9987543
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=362.20 Aligned_cols=207 Identities=27% Similarity=0.413 Sum_probs=172.8
Q ss_pred EEEEEEEEEecCCC--CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH---Hh
Q 000774 909 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 983 (1293)
Q Consensus 909 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 983 (1293)
++++||+++|++.. .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 35999999999999999999999999999999999999999999999999998776544 33
Q ss_pred -hhceEEcccccccc-ccHhhhcCCC---CCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000774 984 -KILGIIPQSPVLFS-GTVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1058 (1293)
Q Consensus 984 -~~i~~v~Q~~~lf~-~ti~~nl~~~---~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 1058 (1293)
+.++|+||++.+|. .|+++|+.+. ......+.. ..+.++++.+ |++.........||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-----ERAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 67999999999886 4999998642 111111111 1123444442 5555566667889999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhccCEEEEEeCCeEe
Q 000774 1059 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVL 1122 (1293)
Q Consensus 1059 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~ 1122 (1293)
||+.+|+||||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+..||+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999875 378999999999999889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=384.94 Aligned_cols=220 Identities=22% Similarity=0.395 Sum_probs=184.7
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...++ .++.||
T Consensus 19 ~l~l~~v~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 94 (377)
T PRK11607 19 LLEIRNLTKSFDGQ--HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPIN 94 (377)
T ss_pred eEEEEeEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 59999999999753 69999999999999999999999999999999999999999999999999987664 467899
Q ss_pred EEccccccccc-cHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1063 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 1063 (1293)
||||++.+|.. |+.||+.+.. .....+..+ .+.+.++.+ ++.........+||||||||++|||||+.+
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLAKR 167 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 9999997532 112222111 122333332 444455566678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCCChH
Q 000774 1064 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1138 (1293)
Q Consensus 1064 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 1138 (1293)
|++|||||||++||+.+++.+.+.|+++. .+.|+|+||||++++.. ||||++|++|++++.|+++|+..++...|
T Consensus 168 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~ 245 (377)
T PRK11607 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRY 245 (377)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHH
Confidence 99999999999999999999998887764 36899999999999766 99999999999999999999987654433
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=368.19 Aligned_cols=218 Identities=26% Similarity=0.397 Sum_probs=182.0
Q ss_pred ccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCC---------
Q 000774 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF--------- 977 (1293)
Q Consensus 907 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~--------- 977 (1293)
+.++++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 459999999999753 699999999999999999999999999999999999999999999999988542
Q ss_pred ----ChHHHhhhceEEccccccccc-cHhhhcCCCC----CCCHHHHHHHHHHhhHHHHHHHccCCcchhh-hcCCCCCC
Q 000774 978 ----GLMDLRKILGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQV-SEAGENFS 1047 (1293)
Q Consensus 978 ----~~~~~r~~i~~v~Q~~~lf~~-ti~~nl~~~~----~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~-~~~~~~LS 1047 (1293)
....+++.++|+||++.+|.. |+++|+.+.. .....+. ...+.++++.+ |+.... +.....||
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~~LS 154 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEA-----RERAVKYLAKV--GIDERAQGKYPVHLS 154 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHc--CCChhhhhCCcccCC
Confidence 124567889999999999975 9999986321 1111111 11123344443 444433 55677899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1048 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1048 gGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 234 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 234 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999875 47999999999999987 9999999999999999
Q ss_pred Chhhhhhc
Q 000774 1126 TPEELLSN 1133 (1293)
Q Consensus 1126 ~~~el~~~ 1133 (1293)
+++++.+.
T Consensus 235 ~~~~~~~~ 242 (257)
T PRK10619 235 APEQLFGN 242 (257)
T ss_pred CHHHhhhC
Confidence 99998754
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=374.31 Aligned_cols=217 Identities=26% Similarity=0.446 Sum_probs=181.6
Q ss_pred EEEEEEEEEecCCC---CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCC----ChHH
Q 000774 909 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 981 (1293)
Q Consensus 909 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~----~~~~ 981 (1293)
|+++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 3599999999999999999999999999999999999999999999999998643 2455
Q ss_pred HhhhceEEcccc--ccccccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 000774 982 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 1055 (1293)
Q Consensus 982 ~r~~i~~v~Q~~--~lf~~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~ 1055 (1293)
.++.|+|+||+| .+|..|+++|+.+.. ....++.. ..+.++++.+ |++ ........+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK-----EKALKWLKKV--GLSEDLISKSPFELSGGQMRRVA 155 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCChhHhhCCcccCCHHHHHHHH
Confidence 677899999998 577789999996321 11222211 1123444443 564 3456677889999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1056 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
|||||+.+|++|||||||++||+.+.+.+.+.|+++. .+.|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999875 47899999999999876 99999999999999999999874
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=364.72 Aligned_cols=217 Identities=28% Similarity=0.411 Sum_probs=180.4
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH-Hhhhc
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKIL 986 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i 986 (1293)
.++++|++++|++. ++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGKI--QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCCc--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 38999999999643 6999999999999999999999999999999999999999999999999998877654 57789
Q ss_pred eEEccccccccc-cHhhhcCCCCC-CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 987 GIIPQSPVLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 987 ~~v~Q~~~lf~~-ti~~nl~~~~~-~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
+|+||++.+|.. |+++|+..... ....+..+. +.+.++.++ +++.........||||||||++||||++.+|
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER-----IKWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHH-----HHHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 999999999975 99999964211 111111111 122222221 1223334456789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++++.. |||+++|++|++++.|+++++..
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999999865 47999999999998766 99999999999999999999864
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=367.12 Aligned_cols=218 Identities=29% Similarity=0.444 Sum_probs=182.1
Q ss_pred ccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-----CcceEEECCeecCC--CCh
Q 000774 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGL 979 (1293)
Q Consensus 907 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~~ 979 (1293)
+.|+++||+++|++. ++++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 358999999999753 699999999999999999999999999999999999863 69999999999864 345
Q ss_pred HHHhhhceEEccccccccccHhhhcCCCC---CC-C----HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHH
Q 000774 980 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1051 (1293)
Q Consensus 980 ~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~-~----~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqk 1051 (1293)
..+|+.++|+||++.+|..|+++|+.+.. .. . ++.+.++++.+++.+ ++....+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD-------EVKDRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhHHHHhcCCCCCCHHHH
Confidence 56788999999999998899999996421 11 1 122233333333221 122344566788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhh
Q 000774 1052 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130 (1293)
Q Consensus 1052 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1130 (1293)
||++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667899999999998876 999999999999999999998
Q ss_pred hhc
Q 000774 1131 LSN 1133 (1293)
Q Consensus 1131 ~~~ 1133 (1293)
...
T Consensus 233 ~~~ 235 (250)
T PRK14240 233 FTN 235 (250)
T ss_pred HhC
Confidence 754
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=360.34 Aligned_cols=206 Identities=21% Similarity=0.372 Sum_probs=172.3
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 4789999999753 699999999999999999999999999999999999999999999999998765542 467999
Q ss_pred Ecccccccc-ccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 989 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 989 v~Q~~~lf~-~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
+||++.+|. .|+++|+.+.. ....++..+ .+.+.++.+ |++........+||||||||++|||||+.+|
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~p 149 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVREP 149 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999885 59999986431 111111111 122333332 4555556667789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 150 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 150 KVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999998753 7899999999999877 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=368.30 Aligned_cols=218 Identities=28% Similarity=0.416 Sum_probs=181.4
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcC---CCC--CcceEEECCeecCCC--ChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VEL--ERGRILIDGFDIAKF--GLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~---~~p--~~G~I~i~g~~i~~~--~~~ 980 (1293)
.++++|+++.|++. ++|+|+||+|++||++||+||||||||||+++|+|+ ++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGDF--HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECCE--eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 48999999999753 699999999999999999999999999999999997 454 589999999998753 345
Q ss_pred HHhhhceEEccccccccccHhhhcCCCC---CC-CH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~-~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
.+|+.++|+||++.+|..|+++|+.+.. .. .. +.+.++++.+++.+ .+.+...+.+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWD-------EVKDKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCc-------chhhhhhCCcccCCHHHHH
Confidence 6788899999999999889999986421 11 11 12233333333221 1223455667889999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999998678999999999999866 9999999999999999999998
Q ss_pred hcC
Q 000774 1132 SNE 1134 (1293)
Q Consensus 1132 ~~~ 1134 (1293)
+..
T Consensus 234 ~~~ 236 (250)
T PRK14245 234 TNP 236 (250)
T ss_pred cCC
Confidence 643
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=373.49 Aligned_cols=217 Identities=22% Similarity=0.370 Sum_probs=182.0
Q ss_pred EEEEEEEEEecCCC---CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCC----ChHH
Q 000774 909 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 981 (1293)
Q Consensus 909 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~----~~~~ 981 (1293)
++++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 3599999999999999999999999999999999999999999999999998753 3456
Q ss_pred HhhhceEEcccc--ccccccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 000774 982 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 1055 (1293)
Q Consensus 982 ~r~~i~~v~Q~~--~lf~~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~ 1055 (1293)
+|+.|+|+||++ .+|+.|+++|+.+.. ..+.++..+ .+.++++. .|++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEA-----LAREKLAL--VGISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCCChhhhhCCcccCCHHHHHHHH
Confidence 788899999998 577889999996421 112222211 12333443 2554 2456677889999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1056 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998754 7899999999999876 99999999999999999999865
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=363.76 Aligned_cols=208 Identities=24% Similarity=0.349 Sum_probs=172.0
Q ss_pred EEEEEEEEEecCCC--CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhc
Q 000774 909 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 986 (1293)
Q Consensus 909 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 986 (1293)
++++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999997411 369999999999999999999999999999999999999999999999998863 36789
Q ss_pred eEEcccccccc-ccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 987 GIIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 987 ~~v~Q~~~lf~-~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
+|+||++.+|. .|+++|+.+.. .....+. ...+.+.++.+ |++........+||||||||++|||||+.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEA-----RERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999887 59999986421 1111111 11123334432 44445555667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEEEe--CCeEeeecChh
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD--SGRVLEYDTPE 1128 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~--~G~i~~~g~~~ 1128 (1293)
+|++|||||||++||+.+.+.+++.|++.. .++|+|+|||+++++.. ||++++|+ +|++++.++.+
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999999999999999999864 37899999999998866 99999999 79999988754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=370.00 Aligned_cols=217 Identities=25% Similarity=0.462 Sum_probs=180.9
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC-----CCcceEEECCeecCCC--ChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~~--~~~ 980 (1293)
.++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++... +..
T Consensus 21 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGEK--RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCCc--eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 48999999999743 69999999999999999999999999999999999865 7899999999998643 344
Q ss_pred HHhhhceEEccccccccccHhhhcCCCC---CC-CH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~-~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
.++++++|+||++.+|..|+++|+.+.. .. .. +.+.++++..++.+ .+....+..+.+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD-------EVKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCc-------chHHHHhcCcccCCHHHHH
Confidence 5678899999999999889999986421 11 11 11223333322211 1123445667889999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998667899999999998876 9999999999999999999987
Q ss_pred hc
Q 000774 1132 SN 1133 (1293)
Q Consensus 1132 ~~ 1133 (1293)
+.
T Consensus 252 ~~ 253 (268)
T PRK14248 252 TS 253 (268)
T ss_pred hC
Confidence 54
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=368.63 Aligned_cols=218 Identities=27% Similarity=0.457 Sum_probs=180.6
Q ss_pred EEEEEEEEEecCC-------CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH
Q 000774 909 IKFEDVVLRYRPE-------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 981 (1293)
Q Consensus 909 i~~~~v~~~y~~~-------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 981 (1293)
|+++||++.|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 246999999999999999999999999999999999999999999999999998766543
Q ss_pred ---HhhhceEEccccc--ccc-ccHhhhcCCC----CCCCHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCCChhH
Q 000774 982 ---LRKILGIIPQSPV--LFS-GTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 1050 (1293)
Q Consensus 982 ---~r~~i~~v~Q~~~--lf~-~ti~~nl~~~----~~~~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~LSgGq 1050 (1293)
+|+.|+|+||++. ++. .|+++|+.+. ......+ ....+.+.++.+ |++ ...+..+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESE-----QKARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 5778999999983 443 5999998421 1111111 111233444443 453 34556678899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecCh
Q 000774 1051 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1127 (1293)
Q Consensus 1051 kqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1127 (1293)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++.+.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999998753 7899999999999976 999999999999999999
Q ss_pred hhhhhc
Q 000774 1128 EELLSN 1133 (1293)
Q Consensus 1128 ~el~~~ 1133 (1293)
+++...
T Consensus 236 ~~~~~~ 241 (265)
T TIGR02769 236 AQLLSF 241 (265)
T ss_pred HHHcCC
Confidence 999864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=359.94 Aligned_cols=204 Identities=27% Similarity=0.469 Sum_probs=170.3
Q ss_pred EEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEE
Q 000774 910 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 989 (1293)
Q Consensus 910 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 989 (1293)
+++|++++|++...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...++++|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999975223699999999999999999999999999999999999999999999999999877777888899999
Q ss_pred ccccc--cccccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 990 PQSPV--LFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 990 ~Q~~~--lf~~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
||++. ++..|+++|+.+.. .....+..+ .+.++++.+ |++.........||||||||++|||||+.+|
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~p 153 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP 153 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99984 56779999986421 111111111 122333332 4444555667789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecCcchhhc-cCEEEEEeCCe
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGR 1120 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~ 1120 (1293)
++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 154 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 154 DILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999998754 7899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=365.04 Aligned_cols=212 Identities=27% Similarity=0.432 Sum_probs=178.3
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH-Hhhhce
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 987 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~ 987 (1293)
|+++||++.|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 4789999999753 6999999999999999999999999999999999999999999999999998777654 366799
Q ss_pred EEccccccccc-cHhhhcCCCCC-C--CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFSE-H--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1063 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~~-~--~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 1063 (1293)
|+||++.+|.. |+++|+.+... . ...+. ..+.++.+ .+++........+||||||||++|||||+++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~--------~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKI--------PDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVTR 149 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHH--------HHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 99999864211 1 11111 11222221 1233445566778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1064 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1064 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++|||||||++||+.+.+.+++.|.+..+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++.
T Consensus 150 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 150 PKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 999999999999999999999999998754 6899999999999986 9999999999999999998873
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=378.76 Aligned_cols=207 Identities=26% Similarity=0.449 Sum_probs=174.5
Q ss_pred EecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEEccccccc
Q 000774 917 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 996 (1293)
Q Consensus 917 ~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 996 (1293)
+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+..+|+++||+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 5654 369999999999999999999999999999999999999999999999999876 4456788999999999998
Q ss_pred cc-cHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCC
Q 000774 997 SG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 1072 (1293)
Q Consensus 997 ~~-ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEp 1072 (1293)
.. |+++|+.++.. ....+.. ..+.+.++.+ |+.........+||||||||++|||||+++|++||||||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 151 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAE-----ERAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEP 151 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 76 99999964321 1111111 1123344443 444455566778999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1073 TAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1073 Ts~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
|+|||+.+.+.+++.|+++. .++|||++||+++++.. ||+|++|++|++++.|+++++.++
T Consensus 152 t~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 152 TTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999999999875 47899999999999977 999999999999999999998754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=367.64 Aligned_cols=218 Identities=24% Similarity=0.397 Sum_probs=181.2
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCC--CC---CcceEEECCeecCCC--ChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--EL---ERGRILIDGFDIAKF--GLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p---~~G~I~i~g~~i~~~--~~~ 980 (1293)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|++ .| ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECCe--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 38999999999743 6999999999999999999999999999999999995 46 499999999998643 344
Q ss_pred HHhhhceEEccccccccccHhhhcCCCC---CC-CH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~-~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
.+|+.++|+||++.+|+.|+++|+.+.. .. .+ +++.++++.+++.+ ++.+..+....+|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD-------EVKDRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCch-------hHHHHHhcCcccCCHHHHH
Confidence 6788899999999999899999986321 11 11 12223333333221 1223456677889999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999998866 9999999999999999999987
Q ss_pred hcC
Q 000774 1132 SNE 1134 (1293)
Q Consensus 1132 ~~~ 1134 (1293)
+.+
T Consensus 236 ~~~ 238 (252)
T PRK14239 236 MNP 238 (252)
T ss_pred hCC
Confidence 643
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=366.06 Aligned_cols=211 Identities=28% Similarity=0.428 Sum_probs=181.4
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++|+++.|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGGR--TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 7899999999753 69999999999999999999999999999999999999999999999999988777777889999
Q ss_pred Ecccccc-ccccHhhhcCCCCCC---C----HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 989 IPQSPVL-FSGTVRFNLDPFSEH---S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 989 v~Q~~~l-f~~ti~~nl~~~~~~---~----~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
+||++.+ +..|+++|+.+.... . ++.+.++++.. |++...+....+||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQV-----------DLAHLAGRDYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHc-----------CCHhHhcCCcccCCHHHHHHHHHHHHH
Confidence 9999987 566999998643211 1 11223333333 444445556778999999999999999
Q ss_pred c------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1061 L------RRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1061 l------~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
+ .+|++|||||||++||+.+.+.+.+.|+++. .++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9 5999999999999999999999999999875 47899999999999876 9999999999999999999886
Q ss_pred h
Q 000774 1132 S 1132 (1293)
Q Consensus 1132 ~ 1132 (1293)
.
T Consensus 230 ~ 230 (258)
T PRK13548 230 T 230 (258)
T ss_pred C
Confidence 4
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=361.14 Aligned_cols=221 Identities=30% Similarity=0.491 Sum_probs=192.5
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 352 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i~ 352 (1293)
|+++|++++|+. .++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.... .++.++
T Consensus 1 i~~~~l~~~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKP-DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCC-CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 478999999963 2467999999999999999999999999999999999999999984321 134599
Q ss_pred EEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCE
Q 000774 353 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 431 (1293)
Q Consensus 353 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~i 431 (1293)
|++|++++|+.||.||+.++.. ....++.+.++..++.+.++.+|.+..+.++..+.+|||||||||+|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999999988643 334455666777888888888988888888889999999999999999999999999
Q ss_pred EEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHhhccHHHHHHH
Q 000774 432 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 507 (1293)
Q Consensus 432 llLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 507 (1293)
+||||||++||+.+.+.+.+.+.+. .+|+|+|++||+++++..||++++|++|++++.|+++++.+..+.|+.+.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 9999999999999999998866554 35899999999999998899999999999999999999988777776644
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=368.13 Aligned_cols=211 Identities=26% Similarity=0.447 Sum_probs=182.1
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|++++|++. ++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGTK--RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECCE--EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 7899999999753 69999999999999999999999999999999999999999999999999887777778888999
Q ss_pred Eccccccccc-cHhhhcCCCCC--------CC---HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 000774 989 IPQSPVLFSG-TVRFNLDPFSE--------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 1056 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~~--------~~---~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 1056 (1293)
+||++.++.+ |+.+|+.+... .. ++.+.++++.. |++.........||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT-----------RINHLADRRLTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHc-----------CCHHHHcCCcccCCHHHHHHHHH
Confidence 9999988876 99999875311 01 11223333333 44444556677899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1057 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1057 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
|||++.+|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999999865 47899999999999876 99999999999999999988863
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=363.64 Aligned_cols=211 Identities=25% Similarity=0.406 Sum_probs=173.3
Q ss_pred EEEEEEEEEecCCC--CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCCh---HHHh
Q 000774 909 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLR 983 (1293)
Q Consensus 909 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~---~~~r 983 (1293)
|+++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 259999999999999999999999999999999999999999999999999987663 4677
Q ss_pred hhceEEcccc--ccc-cccHhhhcCCC----CCCCHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 000774 984 KILGIIPQSP--VLF-SGTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 1055 (1293)
Q Consensus 984 ~~i~~v~Q~~--~lf-~~ti~~nl~~~----~~~~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~ 1055 (1293)
+.++|+||++ .++ ..|+++|+.+. ....+++..+ . ...+.++.+ ++. ...+....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~---~-~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARK---E-AVLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHH---H-HHHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 8899999999 344 45999998531 1111111111 0 012334443 453 4556777889999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1056 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
|||||+.+|++|||||||++||+.+++.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998754 7899999999999885 9999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=364.72 Aligned_cols=215 Identities=25% Similarity=0.366 Sum_probs=181.2
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCC------CChHHH
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK------FGLMDL 982 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~------~~~~~~ 982 (1293)
++++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+....
T Consensus 3 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECCe--eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 7899999999753 69999999999999999999999999999999999999999999999998731 223456
Q ss_pred hhhceEEccccccccc-cHhhhcCCCC----CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 000774 983 RKILGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1057 (1293)
Q Consensus 983 r~~i~~v~Q~~~lf~~-ti~~nl~~~~----~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 1057 (1293)
|++|+|+||++.+|.. |+++|+.... .....+.. ..+.++++.+ |++...+....+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHH
Confidence 7889999999999875 9999985311 11111111 1234444443 566666677789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1058 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1058 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
||++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 999999999999999999999999999999998753 7999999999999876 99999999999999999988754
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=376.72 Aligned_cols=227 Identities=26% Similarity=0.387 Sum_probs=184.7
Q ss_pred cEEEEEEEEEecCC--------CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCCh
Q 000774 908 SIKFEDVVLRYRPE--------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 979 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~--------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~ 979 (1293)
.|+++|++++|+.. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 38999999999631 2368999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhhhceEEccccc--cccc-cHhhhcCC----CCCCCHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCCCh
Q 000774 980 M---DLRKILGIIPQSPV--LFSG-TVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSV 1048 (1293)
Q Consensus 980 ~---~~r~~i~~v~Q~~~--lf~~-ti~~nl~~----~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~LSg 1048 (1293)
. .+|++|+||||+|. ++.. |+.+|+.. .......+. ...+.++++.+ |++ ......+..|||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAER-----REKALAMMAKV--GLRPEHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHH-----HHHHHHHHHHC--CCChHHhcCCCccCCH
Confidence 4 45778999999993 5543 88888741 111121111 11223344432 333 234556778999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1049 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1049 Gqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
|||||++|||||+.+|++||+||||++||+.+.+.+.+.|+++.+ +.|+|+||||++.+.. ||||++|++|+|++.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999998653 7899999999999976 9999999999999999
Q ss_pred ChhhhhhcCCChHHHH
Q 000774 1126 TPEELLSNEGSSFSKM 1141 (1293)
Q Consensus 1126 ~~~el~~~~~~~~~~l 1141 (1293)
+++++.++....|.+.
T Consensus 238 ~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 238 TKEQIFNNPRHPYTQA 253 (327)
T ss_pred CHHHHhcCCCCHHHHH
Confidence 9999987655556543
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=369.51 Aligned_cols=212 Identities=23% Similarity=0.382 Sum_probs=182.9
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.|+++||+++|++. .+|+|+||++.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 7 RLRGEQLTLGYGKY--TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred EEEEEEEEEEECCE--EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 59999999999753 6999999999999999999999999999999999999999999999999998888788888999
Q ss_pred EEcccccccc-ccHhhhcCCCC--C------CCH---HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 000774 988 IIPQSPVLFS-GTVRFNLDPFS--E------HSD---ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1055 (1293)
Q Consensus 988 ~v~Q~~~lf~-~ti~~nl~~~~--~------~~~---~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 1055 (1293)
|+||++.+|. .|+++|+.+.. . ..+ +.+.++++.. |++......+.+||||||||++
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qrv~ 153 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQAT-----------GITHLADQSVDTLSGGQRQRAW 153 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc-----------CCHHHhcCCcccCChHHHHHHH
Confidence 9999998875 59999986431 1 011 1233333333 4444455667889999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1056 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 154 laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999999999999999998753 7899999999998876 99999999999999999998864
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=368.43 Aligned_cols=219 Identities=24% Similarity=0.447 Sum_probs=182.9
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 38999999999754335999999999999999999999999999999999999999999999999998877778889999
Q ss_pred EEccccc-cc-cccHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 988 IIPQSPV-LF-SGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 988 ~v~Q~~~-lf-~~ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
|+||++. +| ..|+++|+.+... ...++..+ .+.+.++. .|+.......+.+||||||||++||||++.
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR-----RVSEALKQ--VDMLERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHH--cCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 9999984 44 5589999864311 11111111 12222332 234444455677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhc
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||||++|++|++++.|+++++...
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999998753 6899999999999878999999999999999999998753
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=367.31 Aligned_cols=218 Identities=28% Similarity=0.417 Sum_probs=180.7
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC-----CCcceEEECCeecCC--CChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 980 (1293)
.|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGNY--EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 38999999999753 69999999999999999999999999999999999997 479999999999854 2344
Q ss_pred HHhhhceEEccccccccccHhhhcCCCCC---CC-H----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---HS-D----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~---~~-~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
.+|+.++|+||++.+|+.|+++|+.+... .. . +++.++++..++.+ ......+..+.+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK-------ETKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc-------chHHHhccChhhCCHHHHH
Confidence 56788999999999998899999964211 11 1 12222333322211 0112345567789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998667999999999999876 9999999999999999999987
Q ss_pred hcC
Q 000774 1132 SNE 1134 (1293)
Q Consensus 1132 ~~~ 1134 (1293)
...
T Consensus 235 ~~~ 237 (251)
T PRK14251 235 IAP 237 (251)
T ss_pred hCC
Confidence 543
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=364.71 Aligned_cols=203 Identities=29% Similarity=0.408 Sum_probs=174.2
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.|+++|++++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++. .+++.++
T Consensus 12 ~l~i~~l~~~~~~~--~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 49999999999753 6999999999999999999999999999999999999999999999998763 4577899
Q ss_pred EEcccccccc-ccHhhhcCCCCC-CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000774 988 IIPQSPVLFS-GTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1065 (1293)
Q Consensus 988 ~v~Q~~~lf~-~ti~~nl~~~~~-~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 1065 (1293)
|+||++.+|. .|+++|+.+... ..++++.++++.. |++......+.+||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV-----------GLADRANEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999887 599999975321 1123344444443 44444555667899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChh
Q 000774 1066 ILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1128 (1293)
Q Consensus 1066 iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~ 1128 (1293)
+|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999998864 37899999999999866 9999999999999988765
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=367.90 Aligned_cols=217 Identities=24% Similarity=0.431 Sum_probs=183.3
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC-----CCcceEEECCeecCC--CChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 980 (1293)
.|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 20 ~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 20 ALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred EEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 5999999999964 369999999999999999999999999999999999997 589999999999864 2345
Q ss_pred HHhhhceEEccccccccccHhhhcCCCC---CC-CH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~-~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
.+|+.|+|+||++.+|..|+++|+.+.. .. .+ +++.++++..++.+. ++...+..+.+|||||||
T Consensus 98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~G~~q 170 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQ-------VKDDLHKSALTLSGGQQQ 170 (267)
T ss_pred HHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCch-------hhhhhcCCcccCCHHHHH
Confidence 6788899999999999889999996421 11 11 223333444333222 123456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++|||||+++|++|||||||++||+.+...+.+.|+++.++.|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999998667999999999999866 9999999999999999999997
Q ss_pred hc
Q 000774 1132 SN 1133 (1293)
Q Consensus 1132 ~~ 1133 (1293)
+.
T Consensus 251 ~~ 252 (267)
T PRK14237 251 TN 252 (267)
T ss_pred cC
Confidence 54
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=364.35 Aligned_cols=211 Identities=24% Similarity=0.362 Sum_probs=187.9
Q ss_pred CccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhh
Q 000774 906 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 985 (1293)
Q Consensus 906 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 985 (1293)
.+.|+++|+++. . .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| .
T Consensus 37 ~~~l~i~nls~~--~--~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLV--G--APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEe--c--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 345999999985 2 3699999999999999999999999999999999999999999999997 3
Q ss_pred ceEEccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000774 986 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1065 (1293)
Q Consensus 986 i~~v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 1065 (1293)
|+|+||++.+|+.|+++|+.+.....+.++.++++.+++.+.+..+|.++++.+.+.+.+||||||||++|||||+.+|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997643333445566777778888888899888888888889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH-HHHcCCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhc
Q 000774 1066 ILVLDEATAAVDVRTDALIQKTI-REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1066 iLlLDEpTs~lD~~t~~~i~~~l-~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
+|||||||++||+.+.+.+.+.+ +....++|||++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999998754 555567999999999999878999999999999999999998753
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=365.36 Aligned_cols=219 Identities=21% Similarity=0.380 Sum_probs=182.1
Q ss_pred ccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC--C---CcceEEECCeecCCC--Ch
Q 000774 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAKF--GL 979 (1293)
Q Consensus 907 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~--p---~~G~I~i~g~~i~~~--~~ 979 (1293)
+.|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|.++... ..
T Consensus 3 ~~l~~~nl~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGKN--HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCCe--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 469999999999743 69999999999999999999999999999999999986 4 689999999998643 34
Q ss_pred HHHhhhceEEcccccccc-ccHhhhcCCCC---C-CCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhH
Q 000774 980 MDLRKILGIIPQSPVLFS-GTVRFNLDPFS---E-HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1050 (1293)
Q Consensus 980 ~~~r~~i~~v~Q~~~lf~-~ti~~nl~~~~---~-~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGq 1050 (1293)
..+|+.++|+||++.+|. .|+++|+.... . ... +.+.++++..++.+.+ .......+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-------KDRLKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcCcCCHHH
Confidence 567888999999999887 59999996421 1 111 1233333333332211 123445677899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhh
Q 000774 1051 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1129 (1293)
Q Consensus 1051 kqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 1129 (1293)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|||++||+++.+.. |||+++|++|++++.|++++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998777899999999999866 99999999999999999999
Q ss_pred hhhcC
Q 000774 1130 LLSNE 1134 (1293)
Q Consensus 1130 l~~~~ 1134 (1293)
+....
T Consensus 234 ~~~~~ 238 (252)
T PRK14256 234 IFTTP 238 (252)
T ss_pred HHhCC
Confidence 87543
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=366.11 Aligned_cols=218 Identities=21% Similarity=0.400 Sum_probs=183.8
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC-----CCcceEEECCeecCC--CChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 980 (1293)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .++.
T Consensus 10 ~l~i~~v~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 48999999999753 69999999999999999999999999999999999986 479999999998853 3456
Q ss_pred HHhhhceEEccccccccccHhhhcCCCCC---CC---HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1054 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~---~~---~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 1054 (1293)
.+|++++|+||++.+|+.|+.+|+.+... .. ++++.++++.+++.+.+. ......+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHHH
Confidence 67888999999999998899999964321 11 123334445544433322 234556778999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEe---------CCeEeee
Q 000774 1055 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD---------SGRVLEY 1124 (1293)
Q Consensus 1055 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~---------~G~i~~~ 1124 (1293)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|||++||+++.+.. ||||++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999998777899999999999877 99999998 8999999
Q ss_pred cChhhhhhcC
Q 000774 1125 DTPEELLSNE 1134 (1293)
Q Consensus 1125 g~~~el~~~~ 1134 (1293)
|+++|+.+.+
T Consensus 241 ~~~~~~~~~~ 250 (264)
T PRK14243 241 DRTEKIFNSP 250 (264)
T ss_pred CCHHHHHhCC
Confidence 9999997643
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=370.65 Aligned_cols=215 Identities=27% Similarity=0.408 Sum_probs=183.6
Q ss_pred cEEEEEEEEEecCC-CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhc
Q 000774 908 SIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 986 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 986 (1293)
.++++||+++|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 38999999999742 23599999999999999999999999999999999999999999999999999877777788899
Q ss_pred eEEccccc--cccccHhhhcCCCC---CCCHHH----HHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 000774 987 GIIPQSPV--LFSGTVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1057 (1293)
Q Consensus 987 ~~v~Q~~~--lf~~ti~~nl~~~~---~~~~~~----~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 1057 (1293)
||+||++. ++..|+.+|+.+.. ...+++ +.++++.+ |+..........||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAV-----------NMLDFKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHC-----------CCHhHhhCCcccCCHHHHHHHHHH
Confidence 99999983 56779999996421 122222 23333333 343344455678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhhhc
Q 000774 1058 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1058 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++++.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998754 7899999999999878999999999999999999998753
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=354.09 Aligned_cols=203 Identities=31% Similarity=0.455 Sum_probs=176.4
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 350 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~~~ 350 (1293)
.|.++|+++.|+ ..++++|||++|+.||.+|+.|||||||||||++|+|+..|+.|.+.. ..++
T Consensus 2 ~i~i~~~~~~~~---~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhcc---cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 478899999996 467999999999999999999999999999999999999999984322 1236
Q ss_pred EEEEcCCcccc-CccHHHHHccCCCC---------CHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000774 351 VAYVPQVSWIF-NATVRDNILFGSAF---------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420 (1293)
Q Consensus 351 i~~v~Q~~~l~-~~Tv~eni~~g~~~---------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRia 420 (1293)
||+|+|+..+| ..||++||+||... ...++.+.++.++|...-+..| .+||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHH
Confidence 99999999997 79999999999521 1345667788888888777777 489999999999
Q ss_pred HHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhh
Q 000774 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 498 (1293)
Q Consensus 421 lAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 498 (1293)
|||||..+|++|+||||+++||++.++.+-..+.+...+ |.|+++||||.++.. .||||++|++|+|...|+++|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999999888777665444 899999999998864 689999999999999999999876
Q ss_pred cc
Q 000774 499 NG 500 (1293)
Q Consensus 499 ~~ 500 (1293)
..
T Consensus 228 ~P 229 (345)
T COG1118 228 HP 229 (345)
T ss_pred CC
Confidence 64
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=376.58 Aligned_cols=225 Identities=20% Similarity=0.379 Sum_probs=182.0
Q ss_pred EEEEEEEEEecCCC--CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC----CCcceEEECCeecCCCChHHH
Q 000774 909 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----LERGRILIDGFDIAKFGLMDL 982 (1293)
Q Consensus 909 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~----p~~G~I~i~g~~i~~~~~~~~ 982 (1293)
++++|+++.|+... ..+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++..++...+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 79999999997532 259999999999999999999999999999999999998 489999999999988887665
Q ss_pred hh----hceEEccccc--ccc-ccHhhhcC----CCCCCCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCC
Q 000774 983 RK----ILGIIPQSPV--LFS-GTVRFNLD----PFSEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 1047 (1293)
Q Consensus 983 r~----~i~~v~Q~~~--lf~-~ti~~nl~----~~~~~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LS 1047 (1293)
++ .|+||||+|. ++. .|+.+++. ....... +.+.++++.+++.+. ....+..+.+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhCC
Confidence 43 6999999994 443 36665542 2111111 223333444333211 123456778899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeee
Q 000774 1048 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 1124 (1293)
Q Consensus 1048 gGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~ 1124 (1293)
||||||++|||||+.+|+|||+||||++||+.+...+.+.|+++.+ +.|+|+||||++.+.. ||||++|.+|+|++.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 7899999999999865 999999999999999
Q ss_pred cChhhhhhcCCChHHHH
Q 000774 1125 DTPEELLSNEGSSFSKM 1141 (1293)
Q Consensus 1125 g~~~el~~~~~~~~~~l 1141 (1293)
|+++++.++....|.+.
T Consensus 236 g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQA 252 (326)
T ss_pred CCHHHHhhCCCChHHHH
Confidence 99999987655555543
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=367.68 Aligned_cols=219 Identities=25% Similarity=0.404 Sum_probs=183.2
Q ss_pred ccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC-----CCcceEEECCeecCC--CCh
Q 000774 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGL 979 (1293)
Q Consensus 907 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~ 979 (1293)
..++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 23 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 23 VVFDTQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred eEEEEeeeEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 359999999999753 69999999999999999999999999999999999997 699999999999853 345
Q ss_pred HHHhhhceEEccccccccccHhhhcCCCC---CCCHH-H----HHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHH
Q 000774 980 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDA-D----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1051 (1293)
Q Consensus 980 ~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~~~~-~----~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqk 1051 (1293)
..+++.++|+||++.+|..|+++|+.+.. ...++ . +.++++..++. .++....+..+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHH
Confidence 56788899999999999889999996421 11111 1 12222222111 1333445667788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhh
Q 000774 1052 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130 (1293)
Q Consensus 1052 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1130 (1293)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++++.. |||+++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999876 999999999999999999998
Q ss_pred hhcC
Q 000774 1131 LSNE 1134 (1293)
Q Consensus 1131 ~~~~ 1134 (1293)
.+..
T Consensus 254 ~~~~ 257 (271)
T PRK14238 254 FSNP 257 (271)
T ss_pred HcCC
Confidence 7543
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=370.86 Aligned_cols=215 Identities=25% Similarity=0.412 Sum_probs=182.0
Q ss_pred cEEEEEEEEEecCC----CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCC-hHHH
Q 000774 908 SIKFEDVVLRYRPE----LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG-LMDL 982 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~----~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~-~~~~ 982 (1293)
.++++|++++|++. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999642 236999999999999999999999999999999999999999999999999987543 3567
Q ss_pred hhhceEEccccc--cccccHhhhcCCCCC---CCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 000774 983 RKILGIIPQSPV--LFSGTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1053 (1293)
Q Consensus 983 r~~i~~v~Q~~~--lf~~ti~~nl~~~~~---~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 1053 (1293)
|+++||+||+|. +|..|+.+|+.+... ... +++.++++.++ +.........+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVG-----------MYEYRRHAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCC-----------CHhHhhCCcccCCHHHHHH
Confidence 889999999984 666689999865321 121 22333444444 4444455567899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhccCEEEEEeCCeEeeecChhhhh
Q 000774 1054 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1054 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||++||+++.+..|||+++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999875 378999999999998789999999999999999999997
Q ss_pred hc
Q 000774 1132 SN 1133 (1293)
Q Consensus 1132 ~~ 1133 (1293)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 53
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=360.20 Aligned_cols=200 Identities=26% Similarity=0.400 Sum_probs=168.8
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChH---HHhhh
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 985 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~ 985 (1293)
++++|++++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999532 3699999999999999999999999999999999999999999999999999876543 46778
Q ss_pred ceEEcccccccc-ccHhhhcCCCC---CCC----HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 000774 986 LGIIPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1057 (1293)
Q Consensus 986 i~~v~Q~~~lf~-~ti~~nl~~~~---~~~----~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 1057 (1293)
++|+||++.+|. .|+++|+.+.. ... ++++.++++..++ .........+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGL-----------EHKADAFPEQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHHHHHH
Confidence 999999999886 59999986421 111 1233344444433 3333444568999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCe
Q 000774 1058 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGR 1120 (1293)
Q Consensus 1058 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~ 1120 (1293)
|||+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++++.. ||++++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999865 47999999999999987 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=372.68 Aligned_cols=219 Identities=21% Similarity=0.385 Sum_probs=181.1
Q ss_pred ccEEEEEEEEEecCCC---CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCC----C-C
Q 000774 907 GSIKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----F-G 978 (1293)
Q Consensus 907 g~i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~----~-~ 978 (1293)
+.|+++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999997532 259999999999999999999999999999999999999999999999999752 1 3
Q ss_pred hHHHhhhceEEcccc--ccccccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCCChhHHH
Q 000774 979 LMDLRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 979 ~~~~r~~i~~v~Q~~--~lf~~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~LSgGqkq 1052 (1293)
...+|+.|+|+||++ .+|..|+++|+.+.. ....++..+ .+.+.++.+ ++. ...+....+|||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~ll~~~--~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYK-----KVPELLKLV--QLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhcCChhhCCHHHHH
Confidence 456788899999998 467779999996421 112222111 122333332 442 3455667889999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1129 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 1129 (1293)
|++|||||+.+|++|||||||++||+.+.+.+++.|+++.+ ++|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998753 7899999999999866 99999999999999999999
Q ss_pred hhh
Q 000774 1130 LLS 1132 (1293)
Q Consensus 1130 l~~ 1132 (1293)
+..
T Consensus 238 ~~~ 240 (289)
T PRK13645 238 IFS 240 (289)
T ss_pred Hhc
Confidence 864
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=340.01 Aligned_cols=436 Identities=20% Similarity=0.242 Sum_probs=317.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000774 37 RVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLG 116 (1293)
Q Consensus 37 ~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~G~l~~~l~~Dv~~l~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~~~l~~ 116 (1293)
..+...-.++|.++.+|++.-|...+++.+++.++..++.|+..+...+..++.+....+.++++.+.+.+..+.+.++.
T Consensus 74 ~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~ 153 (546)
T COG4615 74 TLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLT 153 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45666667888888999999999999999999999999999999997667788888888888888889999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 117 ALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENS--FQSKVQNVRNDELSWFRKAQFLAA 194 (1293)
Q Consensus 117 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1293)
++.+++.+....+...+.-+...+..+..|+..+..+.+++|.|.++.+.--.. +.+.+.... ++.+. ...+...
T Consensus 154 vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a-~~~r~--~~~~~n~ 230 (546)
T COG4615 154 VVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDA-QEYRH--HIIRANT 230 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcch-HHHHh--hhhhhhH
Confidence 777777777778888888888888889999999999999999999998862211 111111111 11111 1111111
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 000774 195 CNSFILNSIP---VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKI 271 (1293)
Q Consensus 195 ~~~~~~~~~~---~~v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~ 271 (1293)
+.....+... ..++.+.|..... -+.-+...+.++...+-.+..|+.++...++.+..|.+|++||.++-..|+..
T Consensus 231 f~~la~~~~ni~l~~lIGlvf~lal~-~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a 309 (546)
T COG4615 231 FHLLAVNWSNIMLLGLIGLVFWLALS-LGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKA 309 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccc
Confidence 1111111111 1111122222211 12223334444555555667899999999999999999999999986655443
Q ss_pred cCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCceee----
Q 000774 272 LLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---- 347 (1293)
Q Consensus 272 ~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~~---- 347 (1293)
..+.+...++...|+++||.|+|++. ..-+..||++|++||++-|+|.|||||||++++|+|++.|++|+ +.+
T Consensus 310 ~~~~~q~~p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~-I~ldg~p 386 (546)
T COG4615 310 DFPRPQAFPDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE-ILLDGKP 386 (546)
T ss_pred cCCCCCcCCcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCc-eeECCcc
Confidence 33333233445679999999999753 36788999999999999999999999999999999999999994 333
Q ss_pred ---------cCcEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHH
Q 000774 348 ---------RGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 417 (1293)
Q Consensus 348 ---------~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkq 417 (1293)
|+-++-|+-|-|||+.++. +.. .+++.+.+-++.-.+.+.... .+|..+. ..||-|||.
T Consensus 387 V~~e~ledYR~LfSavFsDyhLF~~ll~-----~e~~as~q~i~~~LqrLel~~ktsl-~d~~fs~-----~kLStGQkK 455 (546)
T COG4615 387 VSAEQLEDYRKLFSAVFSDYHLFDQLLG-----PEGKASPQLIEKWLQRLELAHKTSL-NDGRFSN-----LKLSTGQKK 455 (546)
T ss_pred CCCCCHHHHHHHHHHHhhhHhhhHhhhC-----CccCCChHHHHHHHHHHHHhhhhcc-cCCcccc-----cccccchHH
Confidence 3335666677777765431 111 344555554444444443332 2222222 479999999
Q ss_pred HHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhh-hcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEe
Q 000774 418 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 490 (1293)
Q Consensus 418 RialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~-~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~ 490 (1293)
|+|+--|++.+-||++|||=-+--||.-+++.++.++-. ...|||++.||||-+....|||++.+++|++++.
T Consensus 456 RlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 456 RLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999999999999999999999887754 4569999999999999999999999999999874
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=363.76 Aligned_cols=218 Identities=26% Similarity=0.418 Sum_probs=183.3
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCC-----cceEEECCeecCCC--ChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKF--GLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~-----~G~I~i~g~~i~~~--~~~ 980 (1293)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~~--~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHKH--QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECCe--eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 48999999999743 6999999999999999999999999999999999999997 69999999998643 345
Q ss_pred HHhhhceEEccccccccccHhhhcCCCCC---C-CH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~---~-~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
.+|+.++|+||++.+|..|+++|+.+... . .. +.+.++++..++.+. +....+..+.+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE-------VKDNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchh-------hhhHhhCCcccCCHHHHH
Confidence 67889999999999998899999974311 1 11 112223333333222 233456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999877 8999999999999999999987
Q ss_pred hcC
Q 000774 1132 SNE 1134 (1293)
Q Consensus 1132 ~~~ 1134 (1293)
...
T Consensus 235 ~~~ 237 (251)
T PRK14249 235 SRP 237 (251)
T ss_pred hCC
Confidence 543
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=365.26 Aligned_cols=217 Identities=26% Similarity=0.435 Sum_probs=181.7
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-----CcceEEECCeecCCC--ChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 980 (1293)
.|+++|+++.|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGEK--KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCCc--eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 38999999999743 699999999999999999999999999999999999984 899999999998653 234
Q ss_pred HHhhhceEEccccccccccHhhhcCCCC----CCCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~----~~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
.+++.++|+||++.+|..|+++|+.+.. ...+ +++.++++..++.+.+ +...+....+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHHH
Confidence 5678899999999999899999996421 1111 1233333333332211 23356677889999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999997667999999999998766 9999999999999999999987
Q ss_pred hc
Q 000774 1132 SN 1133 (1293)
Q Consensus 1132 ~~ 1133 (1293)
+.
T Consensus 234 ~~ 235 (250)
T PRK14262 234 ER 235 (250)
T ss_pred hC
Confidence 54
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=344.10 Aligned_cols=172 Identities=38% Similarity=0.671 Sum_probs=160.9
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|++++|++...++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 47899999997533469999999999999999999999999999999999999999999999999988888888899999
Q ss_pred EccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000774 989 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 1068 (1293)
Q Consensus 989 v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLl 1068 (1293)
++|++.+|..|+++|+ ||||||||++|||||+.+|++||
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999887 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecCcchhhccCEEEEEeCCeE
Q 000774 1069 LDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIIDCDRILLLDSGRV 1121 (1293)
Q Consensus 1069 LDEpTs~lD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~~d~i~vl~~G~i 1121 (1293)
|||||++||+.+++.+.+.|++..+ ++|+|++||+++.+..||++++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999999998753 7899999999999877999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=364.01 Aligned_cols=217 Identities=24% Similarity=0.391 Sum_probs=182.5
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-----CcceEEECCeecCCC--ChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 980 (1293)
.++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGEK--QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECCe--eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 48999999999743 699999999999999999999999999999999999886 799999999998653 334
Q ss_pred HHhhhceEEccccccccccHhhhcCCCCC---C-CH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~---~-~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
..|+.++|+||++.+|..|+++|+.+... . .. +++.++++.+++.+ ++....+.....|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD-------EVKDDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHHHH
Confidence 66888999999999998999999974321 1 11 12233344433321 1223345667889999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++||||++.+|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. |||+++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999997767999999999999876 9999999999999999999987
Q ss_pred hc
Q 000774 1132 SN 1133 (1293)
Q Consensus 1132 ~~ 1133 (1293)
..
T Consensus 235 ~~ 236 (251)
T PRK14270 235 LE 236 (251)
T ss_pred cC
Confidence 54
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=367.33 Aligned_cols=217 Identities=25% Similarity=0.443 Sum_probs=180.3
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC-----CCcceEEECCeecCCCC--hHH
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKFG--LMD 981 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~~~--~~~ 981 (1293)
-+++|++++|++ +++|+|+||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999964 369999999999999999999999999999999999986 47999999999886543 235
Q ss_pred HhhhceEEccccccccccHhhhcCCCC---CC--C----HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 982 LRKILGIIPQSPVLFSGTVRFNLDPFS---EH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 982 ~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~--~----~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
+|+.++|+||++.+|..|+++|+.+.. .. . ++++.++++..++.+. +.+.++..+.+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-------LGDRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhcChhhCCHHHHH
Confidence 688899999999999889999986421 11 1 1122333333332211 122445667789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++++.. ||||++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988678999999999999876 9999999999999999999997
Q ss_pred hcC
Q 000774 1132 SNE 1134 (1293)
Q Consensus 1132 ~~~ 1134 (1293)
+..
T Consensus 237 ~~~ 239 (251)
T PRK14244 237 KNP 239 (251)
T ss_pred cCC
Confidence 654
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=368.91 Aligned_cols=216 Identities=25% Similarity=0.434 Sum_probs=178.4
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecC--CCChHHHhhhc
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKIL 986 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~i 986 (1293)
++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.|
T Consensus 2 l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQDE--PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCCc--ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 7899999999743 6999999999999999999999999999999999999999999999999985 23345677889
Q ss_pred eEEccccc--cccccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 000774 987 GIIPQSPV--LFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 1061 (1293)
Q Consensus 987 ~~v~Q~~~--lf~~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 1061 (1293)
+|+||++. ++..|+.+|+.+.. .....+..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITR-----RVDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHHH
Confidence 99999985 56678999986421 112222111 122233332 3333445566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1062 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1062 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
.+|++|||||||++||+.+...+.+.|+++. .++|||+|||+++.+.. ||++++|++|++++.|+++++...
T Consensus 153 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999865 47899999999999866 999999999999999999998753
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=358.96 Aligned_cols=201 Identities=31% Similarity=0.476 Sum_probs=164.4
Q ss_pred EEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEE
Q 000774 910 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 989 (1293)
Q Consensus 910 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 989 (1293)
+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|+.++|+
T Consensus 1 ~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECCE--EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 368999999653 6999999999999999999999999999999999999999999999998764 467789999
Q ss_pred cccccc---ccccHhhhcCCCCCC-------CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 000774 990 PQSPVL---FSGTVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1059 (1293)
Q Consensus 990 ~Q~~~l---f~~ti~~nl~~~~~~-------~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 1059 (1293)
||++.+ +..|+++|+.+.... ..++. ...+.+.++.+ |++........+||||||||++||||
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~a 146 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKAD-----KAKVDEALERV--GLSELADRQIGELSGGQQQRVLLARA 146 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHH-----HHHHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHHH
Confidence 999976 557999998642211 00110 11122333332 44444455667899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1060 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1060 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
|+.+|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++++.. ||+|++|++| +++.|
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999999865 57899999999999876 9999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=358.25 Aligned_cols=205 Identities=23% Similarity=0.365 Sum_probs=169.6
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChH---HHhhh
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 985 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~ 985 (1293)
++++|++++|++. +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...++. ..|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999643 3699999999999999999999999999999999999999999999999998776543 46778
Q ss_pred ceEEccccccccc-cHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 000774 986 LGIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 1061 (1293)
Q Consensus 986 i~~v~Q~~~lf~~-ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 1061 (1293)
++|+||++.+|.. |+++|+.+.. ....++..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 152 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK-----RVPAALELV--GLSHKHRALPAELSGGEQQRVAIARAIV 152 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHHH
Confidence 9999999999875 9999986421 111111111 122233332 4444445556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeE
Q 000774 1062 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 1121 (1293)
Q Consensus 1062 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 1121 (1293)
.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999874 47999999999999986 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=367.52 Aligned_cols=203 Identities=31% Similarity=0.453 Sum_probs=177.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 353 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------~~~~i~~ 353 (1293)
.|+++|++++|++ .. +++|+||+|++||+++|+|||||||||||++|+|+.+|++|.... ..+.||+
T Consensus 3 ~i~l~~v~K~yg~--~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGS--FE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCC--ce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 5899999999973 12 999999999999999999999999999999999999999994322 1246999
Q ss_pred EcCCcccc-CccHHHHHccCCCC-------CHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 000774 354 VPQVSWIF-NATVRDNILFGSAF-------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 425 (1293)
Q Consensus 354 v~Q~~~l~-~~Tv~eni~~g~~~-------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral 425 (1293)
|+|+..|| ..||+|||.|+... .++++.++++..++.+.++..| .+|||||||||||||||
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHHH
Confidence 99999997 67999999998532 1467888899999999988887 48999999999999999
Q ss_pred hcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhcc
Q 000774 426 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 500 (1293)
Q Consensus 426 ~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 500 (1293)
.++|++++||||+|+||++.+..+-..+.+..+ -|.|+|.||||..++. -+|||.+|++|+|.+.|++.|+.++.
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 999999999999999999999888777666433 3789999999988776 58999999999999999999998664
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=371.89 Aligned_cols=203 Identities=33% Similarity=0.498 Sum_probs=179.3
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCceee-----------cCcE
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-----------RGTV 351 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~~-----------~~~i 351 (1293)
+.++++|++++|+ +..+++|+||+|++||+++|+|||||||||||++|+|+..|++|. +.+ ++.|
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~-I~l~G~~i~~lpp~kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGE-ILLDGEDITDVPPEKRPI 79 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCCCChhhccc
Confidence 4699999999996 478999999999999999999999999999999999999999983 333 3469
Q ss_pred EEEcCCcccc-CccHHHHHccCCC----CC-H---HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000774 352 AYVPQVSWIF-NATVRDNILFGSA----FE-P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 422 (1293)
Q Consensus 352 ~~v~Q~~~l~-~~Tv~eni~~g~~----~~-~---~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialA 422 (1293)
|+|+|+.-|| +.||+|||.||.. .. + +++.++++..++.+..+..| .+|||||+||||||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 9999999998 7899999999954 12 2 47788899999988777766 58999999999999
Q ss_pred HHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchh-hhCCeEEEEeCCeEEEecChHHHhhcc
Q 000774 423 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNNG 500 (1293)
Q Consensus 423 ral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~-~~~~tvi~vtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 500 (1293)
|||..+|++||||||+|+||.+-++++...+.+.. ..|.|.|+||||.++. ..+|||++|++|+|...|+++|+....
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999987776643 3489999999998764 568999999999999999999998764
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=363.02 Aligned_cols=217 Identities=26% Similarity=0.400 Sum_probs=182.5
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-----CcceEEECCeecC-CCChHH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA-KFGLMD 981 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~-~~~~~~ 981 (1293)
.++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++. ..++..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 3899999999974 3699999999999999999999999999999999999986 5999999999985 345667
Q ss_pred HhhhceEEccccccccccHhhhcCCCC---CCC-H----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 000774 982 LRKILGIIPQSPVLFSGTVRFNLDPFS---EHS-D----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1053 (1293)
Q Consensus 982 ~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~~-~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 1053 (1293)
+|+.++|+||++.+|..|+++|+.+.. ... + +++.++++..++.+ .+....+....+||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD-------EVKDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCch-------hhhHHhhcCcccCCHHHHHH
Confidence 788999999999999899999996421 111 1 11222333333221 12234556677899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1054 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1054 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+++|||++||+++.+.. |||+++|++|++++.|+++++..
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999998777999999999999877 99999999999999999998864
Q ss_pred c
Q 000774 1133 N 1133 (1293)
Q Consensus 1133 ~ 1133 (1293)
.
T Consensus 234 ~ 234 (249)
T PRK14253 234 N 234 (249)
T ss_pred C
Confidence 3
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=366.63 Aligned_cols=218 Identities=26% Similarity=0.411 Sum_probs=183.3
Q ss_pred ccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-----CcceEEECCeecCC--CCh
Q 000774 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGL 979 (1293)
Q Consensus 907 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~~ 979 (1293)
+.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 24 ~~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 24 TALEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred cEEEEEEEEEEECCe--eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 359999999999653 699999999999999999999999999999999999984 89999999999864 344
Q ss_pred HHHhhhceEEccccccccccHhhhcCCCC---CC-CH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHH
Q 000774 980 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1051 (1293)
Q Consensus 980 ~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~-~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqk 1051 (1293)
..+|+.++|+||++.+|..|+++|+.+.. .. .. +.+.++++.+++.+.+ .+..+..+.+||||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-------KDRLHENAFGLSGGQQ 174 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-------HHHhhCCcccCCHHHH
Confidence 56788999999999999889999996421 11 11 1233333433332211 2345566788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhh
Q 000774 1052 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130 (1293)
Q Consensus 1052 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1130 (1293)
||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++++.. ||||++|++|++++.|+++++
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999999998777999999999999876 999999999999999999998
Q ss_pred hhc
Q 000774 1131 LSN 1133 (1293)
Q Consensus 1131 ~~~ 1133 (1293)
.+.
T Consensus 255 ~~~ 257 (272)
T PRK14236 255 FTS 257 (272)
T ss_pred hcC
Confidence 754
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=346.02 Aligned_cols=193 Identities=28% Similarity=0.443 Sum_probs=161.0
Q ss_pred EEEEeeEEEcCCCC-CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------------e
Q 000774 285 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 347 (1293)
Q Consensus 285 i~~~~~~~~y~~~~-~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------------~ 347 (1293)
++++|+++.|..+. ..++|+++||+|++||+++|+|||||||||||++|.|+..|++|.... .
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67899999996432 247999999999999999999999999999999999999998884222 2
Q ss_pred cCcEEEEcCCcccc-CccHHHHHccC----CCC---CHHHHHHHHHHcCChhHHh-cCCCCCcccccCCCCCCChHHHHH
Q 000774 348 RGTVAYVPQVSWIF-NATVRDNILFG----SAF---EPARYEKAIDVTSLQHDLD-LLPGGDVTEIGERGVNISGGQKQR 418 (1293)
Q Consensus 348 ~~~i~~v~Q~~~l~-~~Tv~eni~~g----~~~---~~~~~~~~~~~~~l~~~~~-~l~~g~~t~ig~~g~~LSGGqkqR 418 (1293)
+..||||+|+..|. +.||.|||.+. ... ..++....++..++.+... ..| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 34699999999885 78999999853 111 1234555666667765554 444 5899999999
Q ss_pred HHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEeCCeEE
Q 000774 419 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVK 488 (1293)
Q Consensus 419 ialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~ 488 (1293)
|||||||+.+|++++.||||.+||.++.+.+++.+..... .|+|+|+||||......|||++.|.+|++.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 9999999999999999999999999999999987666544 489999999999999999999999999844
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=363.50 Aligned_cols=218 Identities=24% Similarity=0.407 Sum_probs=182.6
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-----CcceEEECCeecCCC--ChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 980 (1293)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 6 ~i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECCe--eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 48999999999643 699999999999999999999999999999999999763 489999999998765 345
Q ss_pred HHhhhceEEccccccccccHhhhcCCCCCC----CH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFSEH----SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~~----~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
..|+.++|+||++.+|+.|+++|+.+.... .. +.+.++++.+++.+ ++.+..+..+.+|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHHH
Confidence 677889999999999988999999753211 11 12223333332211 2234456677889999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999988767999999999999976 9999999999999999999987
Q ss_pred hcC
Q 000774 1132 SNE 1134 (1293)
Q Consensus 1132 ~~~ 1134 (1293)
...
T Consensus 237 ~~~ 239 (253)
T PRK14261 237 ENP 239 (253)
T ss_pred hCC
Confidence 543
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=359.04 Aligned_cols=210 Identities=22% Similarity=0.338 Sum_probs=172.6
Q ss_pred cEEEEEEEEEecCCC--CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH---H
Q 000774 908 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 982 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 982 (1293)
.|+++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 489999999997532 25999999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hhhceEEccccccccc-cHhhhcCCC---CCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 000774 983 -RKILGIIPQSPVLFSG-TVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1057 (1293)
Q Consensus 983 -r~~i~~v~Q~~~lf~~-ti~~nl~~~---~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 1057 (1293)
++.++|+||++.+|.. |+.+|+.+. ......+. ...+.++++.+ +++.........||||||||++||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS-----RNGAKALLEQL--GLGKRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHH
Confidence 3579999999998875 999998632 11111111 11123333332 344444455678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhccCEEEEEeCCeEeee
Q 000774 1058 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1124 (1293)
Q Consensus 1058 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 1124 (1293)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+..||++++|++|++++.
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999998642 7899999999999877999999999999764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=364.88 Aligned_cols=221 Identities=24% Similarity=0.357 Sum_probs=184.2
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHH-hhhc
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 986 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 986 (1293)
.++++|++++|++. ++|+++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... +..+
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGGL--LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECCE--EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 48999999999643 69999999999999999999999999999999999999999999999999988776554 4459
Q ss_pred eEEccccccccc-cHhhhcCCCCC----------CCH-HHHH--HHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 987 GIIPQSPVLFSG-TVRFNLDPFSE----------HSD-ADLW--EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 987 ~~v~Q~~~lf~~-ti~~nl~~~~~----------~~~-~~~~--~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
+|+||++.+|.. |+++|+.+... ..+ .... +......+.++++.+ |++...+....+|||||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHHH
Confidence 999999999976 99999874210 000 0000 000111233445543 6666677788899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1129 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 1129 (1293)
|++|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|||++||+++.+.. ||++++|++|++++.|++++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 99999999999999999999999999999999999998653 6899999999999876 99999999999999999998
Q ss_pred hhh
Q 000774 1130 LLS 1132 (1293)
Q Consensus 1130 l~~ 1132 (1293)
+.+
T Consensus 241 ~~~ 243 (255)
T PRK11300 241 IRN 243 (255)
T ss_pred Hhh
Confidence 864
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=379.75 Aligned_cols=209 Identities=24% Similarity=0.370 Sum_probs=172.3
Q ss_pred CceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCe----ecCCCChHHHh----hhceEEcccccc
Q 000774 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF----DIAKFGLMDLR----KILGIIPQSPVL 995 (1293)
Q Consensus 924 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~----~i~~~~~~~~r----~~i~~v~Q~~~l 995 (1293)
.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++...+...++ ++|+|+||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5899999999999999999999999999999999999999999999996 56666655443 479999999999
Q ss_pred cc-ccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeC
Q 000774 996 FS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1071 (1293)
Q Consensus 996 f~-~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDE 1071 (1293)
|+ .|+++|+.+.. .....+. ...+.+.++.+ |++...+....+||||||||++|||||+.+|+||||||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~-----~~~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDE 190 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAER-----RKRVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDE 190 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 97 59999996421 1111111 11122333332 44444555667899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCCChHH
Q 000774 1072 ATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1139 (1293)
Q Consensus 1072 pTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1139 (1293)
||++||+.+++.+++.|.++.+ ++|+|+||||++++.. ||||++|++|++++.|++++++.++...|.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 191 PFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 9999999999999999998753 7999999999999866 999999999999999999999876544444
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=355.63 Aligned_cols=210 Identities=22% Similarity=0.334 Sum_probs=184.3
Q ss_pred EEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCCh----HHHhhh
Q 000774 910 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDLRKI 985 (1293)
Q Consensus 910 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~r~~ 985 (1293)
.+.|+.++|+++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 468999999755 469999999999999999999999999999999999999999999999998866542 235677
Q ss_pred ceEEccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000774 986 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1065 (1293)
Q Consensus 986 i~~v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 1065 (1293)
++|+||++.+|+.|+++|+.......+++..++++..++.+.+..+|.++++..+....+||||||||++||||++.+|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999889999997654444556677888888888888889999988888889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH--HHHHHc-CCcEEEEEecCcchhhccCEEEEEeCCe
Q 000774 1066 ILVLDEATAAVDVRTDALIQK--TIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGR 1120 (1293)
Q Consensus 1066 iLlLDEpTs~lD~~t~~~i~~--~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~ 1120 (1293)
+|||||||++||+.+.+.+.+ .++... .+.|+|++||+++.+..||++++|++|.
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999888 454443 3689999999999987899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=357.96 Aligned_cols=210 Identities=24% Similarity=0.337 Sum_probs=178.7
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.|+++|+++.|++. ++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++..+++.++
T Consensus 7 ~i~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGDA--KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCCc--eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 48999999999743 6999999999999999999999999999999999999999999999999998888877888999
Q ss_pred EEccccccccccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccC
Q 000774 988 IIPQSPVLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRR 1063 (1293)
Q Consensus 988 ~v~Q~~~lf~~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~~ 1063 (1293)
|+||++.+|+.|+++|+.+.. ..... ...+.+.++.+ |+. +.....+.+||||||||++|||||+.+
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~-------~~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPD-------PAIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChH-------HHHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999889999986421 11110 01123344443 443 345667788999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhccCEEEEEe-CCeEeeecChh
Q 000774 1064 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLD-SGRVLEYDTPE 1128 (1293)
Q Consensus 1064 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~-~G~i~~~g~~~ 1128 (1293)
|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|+ ++..+++|+|+
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999998753 789999999999998899999995 66677778775
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=366.66 Aligned_cols=218 Identities=26% Similarity=0.440 Sum_probs=181.5
Q ss_pred ccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC-----CCcceEEECCeecCC--CCh
Q 000774 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGL 979 (1293)
Q Consensus 907 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~ 979 (1293)
..|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .++
T Consensus 38 ~~l~i~~l~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGDE--QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECCE--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 358999999999753 69999999999999999999999999999999999997 689999999999864 345
Q ss_pred HHHhhhceEEccccccccccHhhhcCCCC---CCC---HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 000774 980 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EHS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1053 (1293)
Q Consensus 980 ~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~~---~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 1053 (1293)
..++++++|+||++.+|..|+++|+.+.. ... ++++.++++..++... +....+..+.+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDE-------VKDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCch-------hHHHHhCCcccCCHHHHHH
Confidence 56788999999999999889999986421 111 2223334443333211 1223456678899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEE-EEeCCeEeeecChhhhh
Q 000774 1054 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRIL-LLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1054 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~-vl~~G~i~~~g~~~el~ 1131 (1293)
++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|++++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998767899999999999877 99976 56999999999999987
Q ss_pred hc
Q 000774 1132 SN 1133 (1293)
Q Consensus 1132 ~~ 1133 (1293)
++
T Consensus 269 ~~ 270 (285)
T PRK14254 269 EN 270 (285)
T ss_pred hC
Confidence 54
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=354.67 Aligned_cols=200 Identities=26% Similarity=0.405 Sum_probs=168.8
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 4789999999643 2 39999999999999999999999999999999999999999999999876654 3578999
Q ss_pred Eccccccccc-cHhhhcCCCCC--C-----CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 989 IPQSPVLFSG-TVRFNLDPFSE--H-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~~--~-----~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
+||++.+|.. |+++|+.+... . .++++.++++..++. ........+||||||||++|||||
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA-----------GLEKRLPGELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH-----------HHHhCCcccCCHHHHHHHHHHHHH
Confidence 9999999975 99999964321 1 122344444444443 334445568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. |||+++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999875 37899999999999977 9999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=364.45 Aligned_cols=219 Identities=26% Similarity=0.414 Sum_probs=181.9
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|+++.|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGGR--LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 7899999999753 69999999999999999999999999999999999999999999999999988887778888999
Q ss_pred Eccccccc-cccHhhhcCCCCCCCHHHHH---HHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 989 IPQSPVLF-SGTVRFNLDPFSEHSDADLW---EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 989 v~Q~~~lf-~~ti~~nl~~~~~~~~~~~~---~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
+||++.++ ..|+++|+.+...... ... .......+.+.++.+ ++.......+..||||||||++||||++.+|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHR-SLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhh-hhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999654 5699999965311000 000 000011233344443 3444455667789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
++|||||||++||+.+.+.+.+.|++..+ +.|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999998753 6899999999999965 99999999999999999988753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=356.75 Aligned_cols=204 Identities=25% Similarity=0.472 Sum_probs=171.8
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|+++.|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ..++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECCE--EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 4789999999643 69999999999999999999999999999999999999999999999988743 45778999
Q ss_pred Eccccccccc-cHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 989 IPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
+||++.+|.. |+++|+.+.. .....+. ...+.++++.+ |++........+||||||||++|||||+.+|
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 147 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHDP 147 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHH-----HHHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998875 9999986421 1111111 11234445543 5555566677889999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 ~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 148 ELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999865 46899999999999876 9999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=362.01 Aligned_cols=219 Identities=24% Similarity=0.402 Sum_probs=181.8
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCee-----cCCCChHHH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD-----IAKFGLMDL 982 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~-----i~~~~~~~~ 982 (1293)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ +...+....
T Consensus 6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGPR--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCCc--eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 48999999999753 69999999999999999999999999999999999999999999999998 776665543
Q ss_pred ----hhhceEEccccc--ccc-ccHhhhcCC----CCCCCHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCCChhH
Q 000774 983 ----RKILGIIPQSPV--LFS-GTVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 1050 (1293)
Q Consensus 983 ----r~~i~~v~Q~~~--lf~-~ti~~nl~~----~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~LSgGq 1050 (1293)
++.++|+||++. ++. .|+.+|+.. +......+.. ..+.++++.+ +++ +..+..+.+|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERV--EIDAARIDDLPTTFSGGM 156 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHc--CCChhHHhCCCccCCHHH
Confidence 457999999984 343 478888742 1111111111 1245566665 343 45677888999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecCh
Q 000774 1051 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1127 (1293)
Q Consensus 1051 kqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1127 (1293)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988653 7899999999999986 999999999999999999
Q ss_pred hhhhhcCC
Q 000774 1128 EELLSNEG 1135 (1293)
Q Consensus 1128 ~el~~~~~ 1135 (1293)
+++.....
T Consensus 237 ~~~~~~~~ 244 (258)
T PRK11701 237 DQVLDDPQ 244 (258)
T ss_pred HHHhcCCC
Confidence 99875443
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=364.29 Aligned_cols=218 Identities=26% Similarity=0.397 Sum_probs=182.9
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-----CcceEEECCeecCC--CChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~~~ 980 (1293)
.++++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 7 AIKVKDLSFYYNTS--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred eEEEEEEEEEECCe--EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 48999999999753 699999999999999999999999999999999999986 48999999999854 3445
Q ss_pred HHhhhceEEccccccccccHhhhcCCCC----CCCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~----~~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
.+++.++|+||++.+|+.|+++|+.+.. ...+ +.+.++++.+++.+.+ ....+..+..|||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 157 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-------KDKLNKSALGLSGGQQQ 157 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHHHH
Confidence 6788899999999999899999986421 1111 2233444444443222 22345567789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEe-----CCeEeeecC
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD-----SGRVLEYDT 1126 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~-----~G~i~~~g~ 1126 (1293)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++++.. ||++++|+ +|++++.|+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCC
Confidence 999999999999999999999999999999999999997667999999999999877 99999998 599999999
Q ss_pred hhhhhhcC
Q 000774 1127 PEELLSNE 1134 (1293)
Q Consensus 1127 ~~el~~~~ 1134 (1293)
++++.+..
T Consensus 238 ~~~~~~~~ 245 (259)
T PRK14260 238 TTQIFSNP 245 (259)
T ss_pred HHHHhcCC
Confidence 99987543
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=364.48 Aligned_cols=217 Identities=26% Similarity=0.453 Sum_probs=180.4
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-----CcceEEECCeecCC--CChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~~~ 980 (1293)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 38999999999753 699999999999999999999999999999999999975 69999999999853 3455
Q ss_pred HHhhhceEEccccccccc-cHhhhcCCCC---C-CCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHH
Q 000774 981 DLRKILGIIPQSPVLFSG-TVRFNLDPFS---E-HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1051 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~-ti~~nl~~~~---~-~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqk 1051 (1293)
.+|+.++|+||++.+|.. |+++|+.+.. . ... +.+.++++..++.+. +.........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNE-------VKDRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhhHhhCCcccCCHHHH
Confidence 678889999999998874 9999986321 1 111 122233333332211 12345566788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEe------CCeEeee
Q 000774 1052 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD------SGRVLEY 1124 (1293)
Q Consensus 1052 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~------~G~i~~~ 1124 (1293)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++++.. ||||++|+ +|++++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999988667999999999999866 99999997 7999999
Q ss_pred cChhhhhhc
Q 000774 1125 DTPEELLSN 1133 (1293)
Q Consensus 1125 g~~~el~~~ 1133 (1293)
|+++++...
T Consensus 235 ~~~~~~~~~ 243 (258)
T PRK14241 235 DDTEKIFSN 243 (258)
T ss_pred CCHHHHHhC
Confidence 999998754
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=355.76 Aligned_cols=207 Identities=27% Similarity=0.398 Sum_probs=171.5
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH---Hhhh
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRKI 985 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r~~ 985 (1293)
|+++|++++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|+.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999432 36999999999999999999999999999999999999999999999999998766443 6788
Q ss_pred ceEEccccccc-cccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 000774 986 LGIIPQSPVLF-SGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 1061 (1293)
Q Consensus 986 i~~v~Q~~~lf-~~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 1061 (1293)
++|+||++.+| ..|+++|+.+.. ....++..+. +.++++.+ +++........+||||||||++||||++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR-----VSAALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAVV 153 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHHH
Confidence 99999999875 569999996421 1222222111 12233332 3444445566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEee
Q 000774 1062 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1123 (1293)
Q Consensus 1062 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 1123 (1293)
.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++++.. ||+|++|++|+++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 9999999999999999999999999999874 46899999999999987 99999999999864
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=350.35 Aligned_cols=222 Identities=30% Similarity=0.419 Sum_probs=191.6
Q ss_pred cEEEEEEEEEecCCC----------------------CCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcc
Q 000774 908 SIKFEDVVLRYRPEL----------------------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 965 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~----------------------~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G 965 (1293)
.|+++||++-|+.+. ...++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 489999999886531 1358899999999999999999999999999999999999999
Q ss_pred eEEECCeecCCCChHHHh----hhceEEccccccccc-cHhhhcCCCCCC---C----HHHHHHHHHHhhHHHHHHHccC
Q 000774 966 RILIDGFDIAKFGLMDLR----KILGIIPQSPVLFSG-TVRFNLDPFSEH---S----DADLWEALERAHLKDAIRRNSL 1033 (1293)
Q Consensus 966 ~I~i~g~~i~~~~~~~~r----~~i~~v~Q~~~lf~~-ti~~nl~~~~~~---~----~~~~~~~l~~~~l~~~i~~lp~ 1033 (1293)
+|.++|.|+.+++..++| +++++|+|+..||.. ||.+|..+.-+. . ++...++++.+|+.+|-.+.
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~y-- 161 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKY-- 161 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcC--
Confidence 999999999999988764 469999999999987 999998765332 1 23355566666666655544
Q ss_pred CcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-c
Q 000774 1034 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-C 1110 (1293)
Q Consensus 1034 gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~ 1110 (1293)
+.+||||+|||+.|||||..+|+|||+|||+|+|||--+..+++-|.++-+ ++||++||||+++..+ -
T Consensus 162 ---------p~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 162 ---------PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ---------cccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 468999999999999999999999999999999999999999999887643 6999999999999876 9
Q ss_pred CEEEEEeCCeEeeecChhhhhhcCCChHHH
Q 000774 1111 DRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140 (1293)
Q Consensus 1111 d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 1140 (1293)
|||.+|++|+|+..|+|+|++.++...|-.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence 999999999999999999999877666643
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=355.30 Aligned_cols=446 Identities=17% Similarity=0.187 Sum_probs=331.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCCh-----hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 000774 31 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFAS-----GKITNLMTTDAEQLQQV-CQALHTLWSAPFRIIISLVL 104 (1293)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~~i~~k~l~l~~~~~~~~~~-----G~l~~~l~~Dv~~l~~~-~~~l~~~~~~~~~~i~~~~~ 104 (1293)
..+...++..+.|.-|...+.++.+.....++..... -..=+|+..|+..+.+. +.....++.+++.++....+
T Consensus 106 ~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~i 185 (604)
T COG4178 106 QTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGI 185 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888999999999999999887555433322 23447999998888763 33445555555555544445
Q ss_pred HHHHHh---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 000774 105 LYNELG---------------VASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWEN 169 (1293)
Q Consensus 105 l~~~~~---------------~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IK~~~~e~ 169 (1293)
+|...| .+.+++++-.++...+..++++...+..-+..+..+.....+....++...|-.|+.|+
T Consensus 186 Lw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~ 265 (604)
T COG4178 186 LWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEK 265 (604)
T ss_pred HHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcH
Confidence 553222 23333333333333445567777777777777888888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000774 170 SFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNM 247 (1293)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~lt~~~~~~~l~~~~~l~~pl~~l~~~ 247 (1293)
...+++++....-.+..++......-...+......+ +.-...++-.+..|.++.|.++.....|..+...+..+...
T Consensus 266 ~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~ 345 (604)
T COG4178 266 VERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDN 345 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777766655554433322222122221111111 11222334446789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc---c-cCCCCCC------CCCCCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEE
Q 000774 248 ITQVVNANVSLKRMEEFLLAEEK---I-LLPNPPL------TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVA 317 (1293)
Q Consensus 248 ~~~~~~~~~s~~Ri~~~l~~~~~---~-~~~~~~~------~~~~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~ 317 (1293)
+..+..-++++.|+.+|-..-+. + ..+.... ......|+++|++..-|. +++.++++||++++||.+.
T Consensus 346 ~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~--~~~ll~~l~~~v~~G~~ll 423 (604)
T COG4178 346 YDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPD--GQTLLSELNFEVRPGERLL 423 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCC--CCeeeccceeeeCCCCEEE
Confidence 99999999999999998754321 1 0011100 001457999999999874 4689999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCCCceeecC-cEEEEcCCccccCccHHHHHccCCC---CCHHHHHHHHHHcCChhHH
Q 000774 318 IVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TVAYVPQVSWIFNATVRDNILFGSA---FEPARYEKAIDVTSLQHDL 393 (1293)
Q Consensus 318 lvG~~GsGKSTLl~~l~g~~~~~~g~~~~~~~-~i~~v~Q~~~l~~~Tv~eni~~g~~---~~~~~~~~~~~~~~l~~~~ 393 (1293)
|.|+||||||||+++|+|++|--+|....-.+ .+-|+||.|++..||.||-|++.+. .+++++.+++..|+|.+.+
T Consensus 424 I~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~ 503 (604)
T COG4178 424 ITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLA 503 (604)
T ss_pred EECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHH
Confidence 99999999999999999999887875444333 4899999999999999999999753 5789999999999999999
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q 000774 394 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL 473 (1293)
Q Consensus 394 ~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l 473 (1293)
+.+.+-+ .-...|||||||||++||.|+++|++++|||+||+||++++..+++. ++...++.|+|-|.||....
T Consensus 504 ~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~-l~~~lp~~tvISV~Hr~tl~ 577 (604)
T COG4178 504 ERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQL-LKEELPDATVISVGHRPTLW 577 (604)
T ss_pred HHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHH-HHhhCCCCEEEEeccchhhH
Confidence 8876532 23458999999999999999999999999999999999999999875 55566899999999998888
Q ss_pred hhCCeEEEEeC
Q 000774 474 SQVDRIILVHE 484 (1293)
Q Consensus 474 ~~~d~i~~l~~ 484 (1293)
...++.+.+.+
T Consensus 578 ~~h~~~l~l~~ 588 (604)
T COG4178 578 NFHSRQLELLD 588 (604)
T ss_pred HHHhhheeecc
Confidence 77777766653
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=356.43 Aligned_cols=208 Identities=26% Similarity=0.377 Sum_probs=176.4
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++||+++|++. ..|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 7899999999642 239999999999999999999999999999999999999999999999876544 3567999
Q ss_pred Eccccccccc-cHhhhcCCCC-CC---C---HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 989 IPQSPVLFSG-TVRFNLDPFS-EH---S---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~-~~---~---~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
+||++.+|.+ |+++|+.+.. .. . ++++.++++..++ +.........||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGI-----------EDLLARLPGQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCc-----------HHHHhCCcccCCHHHHHHHHHHHHH
Confidence 9999999975 9999996421 11 1 2234444444444 4444555568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998653 7899999999999876 999999999999999999998753
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=363.20 Aligned_cols=220 Identities=26% Similarity=0.399 Sum_probs=183.4
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-----CcceEEECCeecCCCC-hHH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFG-LMD 981 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~~-~~~ 981 (1293)
.++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+ ...
T Consensus 21 ~l~i~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAGK--TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECCE--EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 48999999999753 699999999999999999999999999999999999986 6999999999987653 346
Q ss_pred HhhhceEEccccccccccHhhhcCCCC----CCCHHHHHHHHHHhhHHHHHHHc--cCCcchhhhcCCCCCChhHHHHHH
Q 000774 982 LRKILGIIPQSPVLFSGTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRN--SLGLDAQVSEAGENFSVGQRQLLS 1055 (1293)
Q Consensus 982 ~r~~i~~v~Q~~~lf~~ti~~nl~~~~----~~~~~~~~~~l~~~~l~~~i~~l--p~gl~~~~~~~~~~LSgGqkqrl~ 1055 (1293)
+|++++|+||++.+|..|+++|+.+.. ..++.+..+. +.+.++.+ ...+.+.....+.+||||||||++
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGV-----AQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 788999999999999899999996421 1122222211 12222222 111223455677889999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcC
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134 (1293)
Q Consensus 1056 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1134 (1293)
|||||+.+|+||||||||++||+.+.+.+.+.|+++.+++|||+|||+++.+.. |||+++|++|++++.|+++++.+..
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 253 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP 253 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999999987667999999999999876 9999999999999999999997643
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=323.00 Aligned_cols=199 Identities=28% Similarity=0.477 Sum_probs=172.4
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCceeec-----------CcEEE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-----------GTVAY 353 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~~~-----------~~i~~ 353 (1293)
|.+++|.|+|+.. ==..+++|++||++||+||||||||||+++++|+..|.+|. +.+. +.|++
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~-i~i~g~d~t~~~P~~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE-ILINGVDHTASPPAERPVSM 75 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCce-EEEcCeecCcCCcccCChhh
Confidence 5678999999631 13578999999999999999999999999999999999984 3332 35999
Q ss_pred EcCCcccc-CccHHHHHccCCC-------CCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 000774 354 VPQVSWIF-NATVRDNILFGSA-------FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 425 (1293)
Q Consensus 354 v~Q~~~l~-~~Tv~eni~~g~~-------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral 425 (1293)
++|++.|| ..||.+||-+|.. .+.++++.++..+++..+.+.+|. +||||||||+||||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHH
Confidence 99999999 6899999999942 234678889999999999999995 8999999999999999
Q ss_pred hcCCCEEEEeCcccCcCHHHHHHHHHHHHhh-hcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhhcc
Q 000774 426 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 500 (1293)
Q Consensus 426 ~~~~~illLDEpts~LD~~~~~~i~~~l~~~-~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 500 (1293)
+++-+|++||||+|+|||.-+......+... ..++.|+++|||+++.+.. +|+++++++|+|.++|+.+++....
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 9999999999999999999998887644432 3457899999999998875 7999999999999999999887654
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=366.46 Aligned_cols=216 Identities=26% Similarity=0.450 Sum_probs=179.7
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCC--CChHHHhhhc
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--FGLMDLRKIL 986 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~--~~~~~~r~~i 986 (1293)
++++||+++|++. .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 7899999999643 359999999999999999999999999999999999999999999999999852 2344678899
Q ss_pred eEEcccc--ccccccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 000774 987 GIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 1061 (1293)
Q Consensus 987 ~~v~Q~~--~lf~~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 1061 (1293)
+|+||++ .+|..|+++|+.+.. .....+..+ .+.+.++.+ |++......+.+||||||||++|||||+
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK-----RVKEALKAV--GMEGFENKPPHHLSGGQKKRVAIAGILA 153 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 9999998 467789999996321 112211111 122333332 4444445566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1062 RRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1062 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
.+|++|||||||++||+.+...+.+.|+++.+ ++|||++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999998754 7899999999999876 99999999999999999999875
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=373.23 Aligned_cols=226 Identities=25% Similarity=0.411 Sum_probs=184.0
Q ss_pred cEEEEEEEEEecC--CCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCC---cceEEECCeecCCCChHHH
Q 000774 908 SIKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKFGLMDL 982 (1293)
Q Consensus 908 ~i~~~~v~~~y~~--~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~ 982 (1293)
.++++|++++|+. +..++|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++..++...+
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 4899999999953 2235999999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----hhceEEcccc--cccc-ccHhhhcC----CCCCCCHHH----HHHHHHHhhHHHHHHHccCCcchhhhcCCCCCC
Q 000774 983 R----KILGIIPQSP--VLFS-GTVRFNLD----PFSEHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 1047 (1293)
Q Consensus 983 r----~~i~~v~Q~~--~lf~-~ti~~nl~----~~~~~~~~~----~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LS 1047 (1293)
+ +.|+||||+| .++. .|+.+|+. .....+..+ +.+.++.+++ +.+ ...++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~-~~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEA-RKRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CCh-HHHhcCCcccCC
Confidence 3 4799999999 4554 37777663 221222222 2222222222 221 123466778999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeee
Q 000774 1048 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 1124 (1293)
Q Consensus 1048 gGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~ 1124 (1293)
||||||++|||||+.+|++||+||||++||+.+...+.+.|+++.+ +.|+|+||||++.+.. ||||+||.+|+|++.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998754 7899999999999876 999999999999999
Q ss_pred cChhhhhhcCCChHHHH
Q 000774 1125 DTPEELLSNEGSSFSKM 1141 (1293)
Q Consensus 1125 g~~~el~~~~~~~~~~l 1141 (1293)
|+++++.+.....|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 99999997665556543
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=363.88 Aligned_cols=218 Identities=23% Similarity=0.410 Sum_probs=183.0
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-----CcceEEECCeecCC--CChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~~~ 980 (1293)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 20 ~l~~~nl~~~~~~~--~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 20 VFEVEGVKVFYGGF--LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred eEEEeeEEEEeCCe--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 59999999999753 699999999999999999999999999999999999864 59999999999854 2344
Q ss_pred HHhhhceEEccccccccccHhhhcCCCCC---C---CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1054 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~---~---~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 1054 (1293)
.+|+.|+|+||++.+|..|+.+|+..... . .++.+.++++.+++.+.+ .......+..||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-------KDKLKEKGTALSGGQQQRL 170 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-------HHHhcCCcccCCHHHHHHH
Confidence 66889999999999998899999964321 1 122233444444443222 2234556778999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEe---------CCeEeee
Q 000774 1055 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD---------SGRVLEY 1124 (1293)
Q Consensus 1055 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~---------~G~i~~~ 1124 (1293)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|||++||+++.+.. |||+++|+ +|++++.
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~ 250 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF 250 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999998777999999999999876 99999997 8999999
Q ss_pred cChhhhhhcC
Q 000774 1125 DTPEELLSNE 1134 (1293)
Q Consensus 1125 g~~~el~~~~ 1134 (1293)
|+++++....
T Consensus 251 g~~~~~~~~~ 260 (274)
T PRK14265 251 SPTEQMFGSP 260 (274)
T ss_pred CCHHHHHhCC
Confidence 9999987543
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=436.47 Aligned_cols=224 Identities=25% Similarity=0.386 Sum_probs=192.3
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.|+++|++++|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....|+.+|
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG 1006 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLG 1006 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEE
Confidence 599999999996333469999999999999999999999999999999999999999999999999965 4566788999
Q ss_pred EEccccccccc-cHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1063 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 1063 (1293)
||||++.+|+. |++|||.++.. ...++.. ..+.+.++.+ |++...+....+|||||||||+|||||+.+
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~-----~~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi~~ 1079 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQ-----LEMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999999975 99999975321 1221111 1233444443 566666777889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCCChHH
Q 000774 1064 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1139 (1293)
Q Consensus 1064 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1139 (1293)
|+||||||||+|||+.+++.+++.|++..+++|||++||++++++. ||||++|++|++++.|++++|+++.+..|+
T Consensus 1080 PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~gy~ 1156 (2272)
T TIGR01257 1080 AKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFY 1156 (2272)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCCcEE
Confidence 9999999999999999999999999998778999999999999987 999999999999999999999987765554
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=355.33 Aligned_cols=204 Identities=26% Similarity=0.441 Sum_probs=171.3
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCC--CChHHHhhhc
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--FGLMDLRKIL 986 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~--~~~~~~r~~i 986 (1293)
++++||+++|++. ++|+++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+....++.+
T Consensus 1 l~~~~l~~~~~~~--~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECCe--EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 4689999999753 69999999999999999999999999999999999999999999999999853 3445678899
Q ss_pred eEEcccccccc-ccHhhhcCCCC----CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 000774 987 GIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 1061 (1293)
Q Consensus 987 ~~v~Q~~~lf~-~ti~~nl~~~~----~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 1061 (1293)
+|+||++.+|. .|+++|+.+.. ....++.. ..+.+.++.+ |++........+||||||||++||||++
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE-----ERALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALA 151 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence 99999999886 59999986431 11111111 1123344443 5555566677889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecCcchhhc-cCEEEEEeCCeE
Q 000774 1062 RRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRV 1121 (1293)
Q Consensus 1062 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 1121 (1293)
.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998754 7899999999999976 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=363.43 Aligned_cols=220 Identities=22% Similarity=0.355 Sum_probs=184.6
Q ss_pred CCccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-----CcceEEECCeecC----
Q 000774 905 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA---- 975 (1293)
Q Consensus 905 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~---- 975 (1293)
..+.|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 13 ~~~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 13 TQQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CCceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 34569999999999753 699999999999999999999999999999999999985 7999999998774
Q ss_pred CCChHHHhhhceEEccccccccccHhhhcCCCC---CCC-----HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCC
Q 000774 976 KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EHS-----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 1047 (1293)
Q Consensus 976 ~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~~-----~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LS 1047 (1293)
......+++.++|+||++.+|.+|+++|+.+.. ... ++++.++++.+++.+ ++.+..+.....||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCC
Confidence 233456788899999999999889999996421 111 223344444443322 22344566678899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecC
Q 000774 1048 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1126 (1293)
Q Consensus 1048 gGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 1126 (1293)
||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++..++|+|+|||+++++.. |||+++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999998767899999999999876 99999999999999999
Q ss_pred hhhhhhc
Q 000774 1127 PEELLSN 1133 (1293)
Q Consensus 1127 ~~el~~~ 1133 (1293)
++++...
T Consensus 244 ~~~~~~~ 250 (265)
T PRK14252 244 TDTIFIK 250 (265)
T ss_pred HHHHHhC
Confidence 9998754
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=360.93 Aligned_cols=218 Identities=23% Similarity=0.409 Sum_probs=184.3
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC-----CCcceEEECCeecCCC--ChHH
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GLMD 981 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~~--~~~~ 981 (1293)
++++||++.|++. ++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++... +...
T Consensus 4 l~~~~v~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 4 IEVENLNTYFDDA--HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEeEEEEeCCe--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 7899999999743 69999999999999999999999999999999999875 4899999999998653 3556
Q ss_pred HhhhceEEccccccccccHhhhcCCCC---CC-CH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 000774 982 LRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1053 (1293)
Q Consensus 982 ~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~-~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 1053 (1293)
+|++++|+||++.+|..|+++|+.+.. .. ++ +.+.++++.+++.+.+. ...+..+..||||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQQR 154 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHHHH
Confidence 788999999999999889999996421 11 11 22344455555543332 23456677899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1054 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1054 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
++|||||+++|+||||||||++||+.+.+.+.+.|++...++|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFI 234 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999998778999999999999877 99999999999999999999975
Q ss_pred cCC
Q 000774 1133 NEG 1135 (1293)
Q Consensus 1133 ~~~ 1135 (1293)
...
T Consensus 235 ~~~ 237 (250)
T PRK14266 235 NPK 237 (250)
T ss_pred CCC
Confidence 543
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=366.31 Aligned_cols=218 Identities=25% Similarity=0.356 Sum_probs=181.1
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC-----CCcceEEECCeecCCC--ChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~~--~~~ 980 (1293)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++... +..
T Consensus 39 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 39 HVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred EEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 58999999999653 59999999999999999999999999999999999865 4999999999988643 234
Q ss_pred HHhhhceEEccccccccccHhhhcCCCC---CC-CH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~-~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
.+|++++|+||++.+|..|+++|+.+.. .. .. +.+.++++..++.+ ++.......+..|||||||
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-------EVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred HhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCcc-------chhhHhhCChhhCCHHHHH
Confidence 5688899999999999889999997421 11 11 12223333333211 1223345567789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++|||||+.+|++|||||||++||+++.+.+.+.|+++..++|||++||+++.+.. |||+++|++|++++.|+++++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999876 9999999999999999999987
Q ss_pred hcC
Q 000774 1132 SNE 1134 (1293)
Q Consensus 1132 ~~~ 1134 (1293)
++.
T Consensus 270 ~~~ 272 (286)
T PRK14275 270 TNP 272 (286)
T ss_pred hCC
Confidence 643
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=348.85 Aligned_cols=201 Identities=55% Similarity=0.964 Sum_probs=180.2
Q ss_pred EEEEeeEEEcCCCCC--CCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCceeecCcEEEEcCCccccC
Q 000774 285 ISIRNGYFSWDSKAE--RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 362 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~--~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~~~~~i~~v~Q~~~l~~ 362 (1293)
++++|++++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++| .+.+.+.|+|++|+|.+|+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G-~i~~~g~i~~~~q~~~l~~ 79 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG-SVSVPGSIAYVSQEPWIQN 79 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCC-eEEEcCEEEEEecCchhcc
Confidence 478999999964211 4799999999999999999999999999999999999999999 5667789999999999999
Q ss_pred ccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcC
Q 000774 363 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442 (1293)
Q Consensus 363 ~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD 442 (1293)
.|++||+.++...+.++..++.+.+++.+.++.+|.|+++.++..+.+||||||||++|||||+.+|+++||||||++||
T Consensus 80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 99999999876555566777888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-hhcCCcEEEEEecCcchhhhCCeEEEEeCCe
Q 000774 443 AHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQVDRIILVHEGM 486 (1293)
Q Consensus 443 ~~~~~~i~~~l~~-~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~ 486 (1293)
+.+.+++++.++. ...+++|+|++||+++.+..||++++|++|+
T Consensus 160 ~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 160 AHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999886554 3345799999999999998899999999984
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=364.00 Aligned_cols=217 Identities=23% Similarity=0.355 Sum_probs=178.1
Q ss_pred cEEEEEEEEEecCC-------CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChH
Q 000774 908 SIKFEDVVLRYRPE-------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~-------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~ 980 (1293)
.|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999621 23699999999999999999999999999999999999999999999999998765555
Q ss_pred HHhhhceEEccccc--cccc-cHhhhcCCC----CCCCH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChh
Q 000774 981 DLRKILGIIPQSPV--LFSG-TVRFNLDPF----SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 1049 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~--lf~~-ti~~nl~~~----~~~~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgG 1049 (1293)
..++.++|+||++. ++.. |+.+|+... ..... +++.++++.+++. .........+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL----------PDHASYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC----------hHHHhcCchhcCHH
Confidence 55678999999985 4443 888887521 11111 2233334443331 12233445689999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecC
Q 000774 1050 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1126 (1293)
Q Consensus 1050 qkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 1126 (1293)
||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+.. ||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999998753 7899999999999987 99999999999999999
Q ss_pred hhhhhhcC
Q 000774 1127 PEELLSNE 1134 (1293)
Q Consensus 1127 ~~el~~~~ 1134 (1293)
++++.+..
T Consensus 234 ~~~~~~~~ 241 (267)
T PRK15112 234 TADVLASP 241 (267)
T ss_pred HHHHhcCC
Confidence 99998643
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=403.41 Aligned_cols=102 Identities=27% Similarity=0.450 Sum_probs=92.0
Q ss_pred Ccch-hhhcCCCCCChhHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhh
Q 000774 1034 GLDA-QVSEAGENFSVGQRQLLSLSRALLRRS---KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTII 1108 (1293)
Q Consensus 1034 gl~~-~~~~~~~~LSgGqkqrl~lArall~~p---~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~ 1108 (1293)
|++. ..++...+||||||||+.|||+|+++| +++||||||+|||+.+.+.+.+.|+++. .+.|||+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5543 356777899999999999999999999 9999999999999999999999999875 4789999999999998
Q ss_pred ccCEEEEE------eCCeEeeecChhhhhhcCC
Q 000774 1109 DCDRILLL------DSGRVLEYDTPEELLSNEG 1135 (1293)
Q Consensus 1109 ~~d~i~vl------~~G~i~~~g~~~el~~~~~ 1135 (1293)
.||+|++| ++|+|++.|+++++.+...
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 89999999 7999999999999986543
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=357.21 Aligned_cols=214 Identities=25% Similarity=0.446 Sum_probs=180.6
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|++++|++. ++|+|+||++.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 4789999999753 69999999999999999999999999999999999999999999999999876543 4678999
Q ss_pred Eccccccccc-cHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 989 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
+||++.+|.+ |+++|+.+... ...... ...+.+.++.+ ++....+....+|||||+||++||||++++|
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~p 149 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKI-----KARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVEP 149 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHH-----HHHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999976 99999964221 111111 11234455554 3344455566789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
+++||||||++||+.+++.+++.|++... ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 150 ~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 150 QVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999998654 6899999999999876 999999999999999999999753
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=360.09 Aligned_cols=217 Identities=26% Similarity=0.419 Sum_probs=180.0
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCC-----cceEEECCeecCC--CChHH
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAK--FGLMD 981 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~-----~G~I~i~g~~i~~--~~~~~ 981 (1293)
++++||+++|++. ++++|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++.. .+...
T Consensus 5 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 5 LSAQDVNIYYGDK--QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEeeeEEEECCE--EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 7899999999743 6999999999999999999999999999999999999875 8999999999864 33456
Q ss_pred HhhhceEEccccccccc-cHhhhcCCCC---CC-CHHHHHHH----HHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 982 LRKILGIIPQSPVLFSG-TVRFNLDPFS---EH-SDADLWEA----LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 982 ~r~~i~~v~Q~~~lf~~-ti~~nl~~~~---~~-~~~~~~~~----l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
+|+.++|+||++.+|.. |+.+|+.... .. .+++..+. ++..++.+ ++.........+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 155 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD-------EVKDRLKTPATGLSGGQQQ 155 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcch-------hhhhhhcCCcccCCHHHHH
Confidence 78889999999998875 9999996321 11 12222221 22222111 1222334566789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|++++++
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999886 9999999999999999999997
Q ss_pred hcC
Q 000774 1132 SNE 1134 (1293)
Q Consensus 1132 ~~~ 1134 (1293)
...
T Consensus 236 ~~~ 238 (252)
T PRK14272 236 TNP 238 (252)
T ss_pred hCc
Confidence 654
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=360.96 Aligned_cols=218 Identities=23% Similarity=0.336 Sum_probs=184.2
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-----CcceEEECCeecCCC--ChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 980 (1293)
.+.++++++.|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++... ...
T Consensus 8 ~~~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGNF--MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 38999999999753 699999999999999999999999999999999999987 799999999998643 334
Q ss_pred HHhhhceEEccccccccccHhhhcCCCCC---C---CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1054 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~---~---~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 1054 (1293)
.+|+.++|+||++.+|..|+.+|+.+... . ..+++.++++.+++.+.+. ...++...+|||||+||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-------DKLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHHHH
Confidence 56788999999999998899999974321 1 1234455555555433222 233456678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEe--------CCeEeeec
Q 000774 1055 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD--------SGRVLEYD 1125 (1293)
Q Consensus 1055 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~--------~G~i~~~g 1125 (1293)
+|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++++.. ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999998667899999999999876 99999996 89999999
Q ss_pred ChhhhhhcC
Q 000774 1126 TPEELLSNE 1134 (1293)
Q Consensus 1126 ~~~el~~~~ 1134 (1293)
+++++.+..
T Consensus 239 ~~~~~~~~~ 247 (261)
T PRK14263 239 PTAQIFQNP 247 (261)
T ss_pred CHHHHHhCC
Confidence 999997643
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=358.78 Aligned_cols=214 Identities=26% Similarity=0.408 Sum_probs=178.8
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++|++++|++. ++++|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 4689999999753 69999999999999999999999999999999999999999999999999876554 3678999
Q ss_pred Eccccccccc-cHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 989 IPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
+||++.+|.+ |+++|+.+.. ........ ..+.+.++. .|++.........||||||||++||||++.+|
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~-----~~~~~~l~~--~~l~~~~~~~~~~lS~G~~qrl~laral~~~p 149 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIK-----ERVAEALDL--VQLEGYANRKPSQLSGGQQQRVAIARALVNEP 149 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999965 9999986321 11111110 112223333 24445555566789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
++|||||||++||+.+.+.+++.|+++.+ ++|+|++||+++++.. |||+++|++|++++.|+++++.+.
T Consensus 150 ~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 150 KVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999999999998753 7899999999999876 999999999999999999888753
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=325.53 Aligned_cols=195 Identities=25% Similarity=0.453 Sum_probs=173.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------ec
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 348 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------~~ 348 (1293)
.|+|+||+++|+. ++++|+||||+|++||++-|+||||||||||+|+|.+...|+.|.... +|
T Consensus 1 mI~f~~V~k~Y~~--g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 1 MIRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred CeeehhhhhhcCC--CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence 3899999999984 478999999999999999999999999999999999999999984321 46
Q ss_pred CcEEEEcCCcccc-CccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000774 349 GTVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420 (1293)
Q Consensus 349 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRia 420 (1293)
++||+|+||.-|. +.||+||++|... .. .+++.+++++++|.+....+|. +|||||+||++
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRva 147 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVA 147 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHH
Confidence 6899999999875 7899999998632 12 3567789999999999999994 89999999999
Q ss_pred HHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhC-CeEEEEeCCeEEEec
Q 000774 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 491 (1293)
Q Consensus 421 lAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~-d~i~~l~~G~i~~~g 491 (1293)
||||+..+|++||-||||-+|||.....|++.+.+..+.|.||++.||+.+.++.+ -|++.+++|+++...
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999999999999986666677899999999999999986 899999999998643
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=372.72 Aligned_cols=224 Identities=21% Similarity=0.359 Sum_probs=181.2
Q ss_pred EEEEEEEEEecC--CCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC----CCcceEEECCeecCCCChHHH
Q 000774 909 IKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----LERGRILIDGFDIAKFGLMDL 982 (1293)
Q Consensus 909 i~~~~v~~~y~~--~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~----p~~G~I~i~g~~i~~~~~~~~ 982 (1293)
|+++|++++|+. +...+|+||||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.++.+.+...+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 899999999953 12359999999999999999999999999999999999996 589999999999988877655
Q ss_pred h----hhceEEccccc--ccc-ccHhhhcCCC------CC-C--C----HHHHHHHHHHhhHHHHHHHccCCcchhhhcC
Q 000774 983 R----KILGIIPQSPV--LFS-GTVRFNLDPF------SE-H--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEA 1042 (1293)
Q Consensus 983 r----~~i~~v~Q~~~--lf~-~ti~~nl~~~------~~-~--~----~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~ 1042 (1293)
+ +.|+||||++. ++. .||.+|+... .. . . ++++.+.++.+++.+. .......
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~~~~~ 155 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH--------KDAMRSF 155 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh--------HHHHhCC
Confidence 3 46999999996 333 3888887420 00 0 0 1123333333333210 1234556
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCC
Q 000774 1043 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSG 1119 (1293)
Q Consensus 1043 ~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G 1119 (1293)
+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++.+ +.|+|+||||++.+.. ||||++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 678999999999999999999999999999999999999999999998754 7899999999999976 9999999999
Q ss_pred eEeeecChhhhhhcCCChHHH
Q 000774 1120 RVLEYDTPEELLSNEGSSFSK 1140 (1293)
Q Consensus 1120 ~i~~~g~~~el~~~~~~~~~~ 1140 (1293)
+|++.|+++++.+.....|.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHH
Confidence 999999999998765545554
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=361.50 Aligned_cols=220 Identities=25% Similarity=0.348 Sum_probs=182.1
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCC--------cceEEECCeecCCCChH
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE--------RGRILIDGFDIAKFGLM 980 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~--------~G~I~i~g~~i~~~~~~ 980 (1293)
|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++...+..
T Consensus 2 l~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 7899999999653 6999999999999999999999999999999999999998 99999999999887777
Q ss_pred HHhhhceEEccccc-cccccHhhhcCCCCC-C-CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 000774 981 DLRKILGIIPQSPV-LFSGTVRFNLDPFSE-H-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1057 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~-lf~~ti~~nl~~~~~-~-~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 1057 (1293)
.+++.++|+||++. +|..|+++|+.+... . .............+.+.++. .|+++..+....+||||||||++||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~l~~~~~~~~~~LSgG~~qrv~la 157 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALAL--AGATALVGRDVTTLSGGELARVQFA 157 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHH--cCcHhhhcCCcccCCHHHHHHHHHH
Confidence 78888999999986 567799999964211 0 00000000001112333333 2555666677789999999999999
Q ss_pred HHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1058 RALL---------RRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1058 rall---------~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
|||+ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++.+.. ||++++|++|++++.|
T Consensus 158 ral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g 237 (272)
T PRK13547 158 RVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHG 237 (272)
T ss_pred HHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEec
Confidence 9999 59999999999999999999999999998653 6899999999999875 9999999999999999
Q ss_pred Chhhhhh
Q 000774 1126 TPEELLS 1132 (1293)
Q Consensus 1126 ~~~el~~ 1132 (1293)
+++++.+
T Consensus 238 ~~~~~~~ 244 (272)
T PRK13547 238 APADVLT 244 (272)
T ss_pred CHHHHcC
Confidence 9988864
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=359.91 Aligned_cols=215 Identities=22% Similarity=0.289 Sum_probs=175.5
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCC--CCCcceEEECCeecCCCChHHH-hhh
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDL-RKI 985 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p~~G~I~i~g~~i~~~~~~~~-r~~ 985 (1293)
|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|.++...+.... +..
T Consensus 1 l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVEDK--EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECCE--EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 4789999999743 6999999999999999999999999999999999994 7999999999999988776554 445
Q ss_pred ceEEccccccccc-cHhhhcCCCCC----------CCHHHHHHHHHHhhHHHHHHHccCCcch-hhhcCCC-CCChhHHH
Q 000774 986 LGIIPQSPVLFSG-TVRFNLDPFSE----------HSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGE-NFSVGQRQ 1052 (1293)
Q Consensus 986 i~~v~Q~~~lf~~-ti~~nl~~~~~----------~~~~~~~~~l~~~~l~~~i~~lp~gl~~-~~~~~~~-~LSgGqkq 1052 (1293)
++|+||++.+|.+ |+++|+..... ....+.. ..+.+.++.+ |++. ..+.... .|||||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALL--GMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHc--CCchhhcccccccCcCHHHHH
Confidence 9999999998876 89998853210 0101110 1223344432 4432 2334444 59999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc--cCEEEEEeCCeEeeecChhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEE 1129 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~--~d~i~vl~~G~i~~~g~~~e 1129 (1293)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+|||+++.+.. ||++++|++|++++.|++++
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999875 36899999999999876 79999999999999999987
Q ss_pred hhh
Q 000774 1130 LLS 1132 (1293)
Q Consensus 1130 l~~ 1132 (1293)
+..
T Consensus 232 ~~~ 234 (243)
T TIGR01978 232 AKE 234 (243)
T ss_pred hcc
Confidence 653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=354.51 Aligned_cols=220 Identities=31% Similarity=0.536 Sum_probs=189.3
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 352 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i~ 352 (1293)
++++|+++.|+...++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.... .+..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997433467999999999999999999999999999999999999999984321 123599
Q ss_pred EEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCE
Q 000774 353 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 431 (1293)
Q Consensus 353 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~i 431 (1293)
|++|++.+++.||+||+.++.. ...++....++.+++.+.++.+|.+..+.++....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988899999998643 234455666777788888888998888888888899999999999999999999999
Q ss_pred EEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHhhccHHHHH
Q 000774 432 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 505 (1293)
Q Consensus 432 llLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 505 (1293)
+||||||++||+.+.+++.+.+.... +|+|+|++||+++++..||++++|++|++++.|+.+++......++.
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 233 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAK 233 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHH
Confidence 99999999999999999988665544 78999999999999988999999999999999999888765444433
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=356.39 Aligned_cols=225 Identities=23% Similarity=0.358 Sum_probs=195.7
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecC
Q 000774 282 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRG 349 (1293)
Q Consensus 282 ~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~ 349 (1293)
.+.|+++|++++|+. ..+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.... .+.
T Consensus 17 ~~~i~~~~l~~~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYEN-NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCC-CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 356999999999963 2357999999999999999999999999999999999999999984321 234
Q ss_pred cEEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCC
Q 000774 350 TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 429 (1293)
Q Consensus 350 ~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~ 429 (1293)
.|+|++|++++|+.|++||+........+++..+++..++.+.++.+|.++++.+++.+.+||||||||++|||||+.+|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 69999999999999999999765433455667778888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHhhc-cHHHHHHHH
Q 000774 430 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKLME 508 (1293)
Q Consensus 430 ~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 508 (1293)
+++||||||++||+.+.+.+++.+.. ..++.|+|++||+++.+..||||++|++|++++.|+++++... .+.+++++.
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~-~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 254 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMT-AFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVR 254 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHH-hcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHh
Confidence 99999999999999999988875544 4568999999999999988999999999999999999998765 345665553
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=360.67 Aligned_cols=219 Identities=21% Similarity=0.353 Sum_probs=178.5
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCC---cceEEECCeecCCC-----Ch
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKF-----GL 979 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~---~G~I~i~g~~i~~~-----~~ 979 (1293)
.++++||+++|++. ++|+|+||++.+||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQH--QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCCe--EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 38999999999743 6999999999999999999999999999999999999986 49999999988653 23
Q ss_pred HHHhhhceEEccccccccc-cHhhhcCCCCC-CCHH-----HHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 980 MDLRKILGIIPQSPVLFSG-TVRFNLDPFSE-HSDA-----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 980 ~~~r~~i~~v~Q~~~lf~~-ti~~nl~~~~~-~~~~-----~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
..+++.++|+||++.+|.. |+++|+.+... ..+. ..........+.+.++.+ |++...+....+|||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~q 159 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQQ 159 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHHH
Confidence 4567889999999998874 99999964211 0000 000000011233444443 4444556667789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1129 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 1129 (1293)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred HHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998753 7899999999998765 99999999999999999998
Q ss_pred h
Q 000774 1130 L 1130 (1293)
Q Consensus 1130 l 1130 (1293)
+
T Consensus 240 ~ 240 (262)
T PRK09984 240 F 240 (262)
T ss_pred h
Confidence 6
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=360.72 Aligned_cols=218 Identities=27% Similarity=0.420 Sum_probs=182.4
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCC-----cceEEECCeecCC--CChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAK--FGLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~-----~G~I~i~g~~i~~--~~~~ 980 (1293)
.|+++|++++|++. .+|+|+||++++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 7 ~l~~~nl~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 7 AIKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred eEEEeeEEEEeCCe--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 59999999999643 5999999999999999999999999999999999999985 8999999999753 3445
Q ss_pred HHhhhceEEccccccccccHhhhcCCCC---CC-CH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~-~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
.+|+.++|+||++.+|..|++||+.+.. .. .+ +.+.++++..++.+++ +...++.+.+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q 157 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI-------KHKIHKSALDLSGGQQQ 157 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHHHH
Confidence 6788899999999999899999996421 11 11 2233344444432222 22345667789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEEEeC-----CeEeee
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS-----GRVLEY 1124 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~-----G~i~~~ 1124 (1293)
|++|||||+++|++|||||||++||+++.+.+.+.|+++. .++|+|+|||+++++.. ||||++|++ |++++.
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999999999999999999999999999999999854 47999999999999876 999999999 999999
Q ss_pred cChhhhhhcC
Q 000774 1125 DTPEELLSNE 1134 (1293)
Q Consensus 1125 g~~~el~~~~ 1134 (1293)
|+++++...+
T Consensus 238 ~~~~~~~~~~ 247 (261)
T PRK14258 238 GLTKKIFNSP 247 (261)
T ss_pred CCHHHHHhCC
Confidence 9999997643
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=352.86 Aligned_cols=220 Identities=31% Similarity=0.566 Sum_probs=191.0
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 352 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i~ 352 (1293)
++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 468999999963 357999999999999999999999999999999999999999984321 123599
Q ss_pred EEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCE
Q 000774 353 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 431 (1293)
Q Consensus 353 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~i 431 (1293)
|++|++++|+.|++||+.++.. .....+...++.+++.+.+..++.++++.++....+||||||||++|||||+.+|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998743 334456667778888888899999999989889999999999999999999999999
Q ss_pred EEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHhhccHHHHHHH
Q 000774 432 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 507 (1293)
Q Consensus 432 llLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 507 (1293)
+||||||++||+.+.+.+.+.+..... |+|+|++||+++.+..||++++|++|++++.|+.+++......++..+
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~ 233 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMW 233 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHH
Confidence 999999999999999999886655443 899999999999998899999999999999999988877655555443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=374.96 Aligned_cols=211 Identities=24% Similarity=0.408 Sum_probs=178.4
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCC----ChHHHhh
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMDLRK 984 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~----~~~~~r~ 984 (1293)
|++ |++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +....++
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 999999642 23 89999999999999999999999999999999999999999999998642 2334677
Q ss_pred hceEEccccccccc-cHhhhcCCCCC-CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 985 ILGIIPQSPVLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 985 ~i~~v~Q~~~lf~~-ti~~nl~~~~~-~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
+++|+||++.+|.. |+++|+.+... ..++++.+.++.. |++...+....+||||||||++|||||+.
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALL-----------GIEPLLDRYPGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHc-----------CCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 89999999999975 99999975321 1223344444443 44444555667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCC
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1135 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1135 (1293)
+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|++++.|+++++..++.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 9999999999999999999999999998753 6899999999999877 99999999999999999999987543
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=371.56 Aligned_cols=204 Identities=26% Similarity=0.400 Sum_probs=172.4
Q ss_pred EEEEeeEEEcCCCC-CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------ec
Q 000774 285 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 348 (1293)
Q Consensus 285 i~~~~~~~~y~~~~-~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------~~ 348 (1293)
|+++|++++|+.++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 357999999999999999999999999999999999999999984321 24
Q ss_pred CcEEEEcCCcccc-CccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000774 349 GTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420 (1293)
Q Consensus 349 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRia 420 (1293)
+.|||+||++.+| ..||+||+.++.. .+. ++..+.++..++.+..+..| .+|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 5799999999988 5899999987531 222 34556677777766554433 589999999999
Q ss_pred HHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhh
Q 000774 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 498 (1293)
Q Consensus 421 lAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 498 (1293)
|||||+.+|++||||||||+||+.+.+.+++.+.+...+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 999999999999999999999999999999866654443 8999999999999865 89999999999999999999876
Q ss_pred c
Q 000774 499 N 499 (1293)
Q Consensus 499 ~ 499 (1293)
+
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 5
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=353.24 Aligned_cols=217 Identities=33% Similarity=0.544 Sum_probs=188.8
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 352 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i~ 352 (1293)
|+++|++++|+. .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .++.++
T Consensus 1 i~~~~l~~~~~~-~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPG-DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCC-CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999963 2247999999999999999999999999999999999999999984321 134599
Q ss_pred EEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCE
Q 000774 353 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 431 (1293)
Q Consensus 353 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~i 431 (1293)
|++|++.+|..|++||+.++.. ....++.+.++.+++.+.++.++.+..+..+....+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999998999999998743 344556667778888899999988888888888999999999999999999999999
Q ss_pred EEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHhhccHHH
Q 000774 432 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELF 503 (1293)
Q Consensus 432 llLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 503 (1293)
+||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+..||++++|++|++++.|+.+++.+....|
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 230 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERL-MKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVY 230 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcch
Confidence 9999999999999999998766544 4689999999999999889999999999999999998887665443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=358.86 Aligned_cols=206 Identities=23% Similarity=0.340 Sum_probs=172.1
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999965 3699999999999999999999999999999999999999999999999998642 246899
Q ss_pred Ecccccccc-ccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 989 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 989 v~Q~~~lf~-~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
+||++.+|. .|+++|+.+.. .....+. ...+.+.++.+ |++......+.+||||||||++|||||+.+|
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQR-----LEIAHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHH-----HHHHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999887 49999986421 1111111 11233444443 4444555667789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEEEe--CCeEeeecChh
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD--SGRVLEYDTPE 1128 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~--~G~i~~~g~~~ 1128 (1293)
++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.+
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999999863 37999999999999876 99999998 59999988754
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=349.93 Aligned_cols=201 Identities=23% Similarity=0.367 Sum_probs=169.9
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++||+++|+. .++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..++.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999962 568999999999999999999999999999999999999999999999987543 35778999
Q ss_pred Eccccccccc-cHhhhcCCC-CC-C-----CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 989 IPQSPVLFSG-TVRFNLDPF-SE-H-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~-~~-~-----~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
+||++.+|.. |+++|+.+. .. . .+.++.++++..++. ........+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA-----------DYLDRLPEQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH-----------HHhhCCcccCCHHHHHHHHHHHHH
Confidence 9999999875 999998631 11 1 122344444444443 334445568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecC
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1126 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 1126 (1293)
+.+|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998753 7899999999999876 99999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=365.47 Aligned_cols=219 Identities=27% Similarity=0.466 Sum_probs=182.9
Q ss_pred CccEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC-----CCcceEEECCeecCCC--C
Q 000774 906 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--G 978 (1293)
Q Consensus 906 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~~--~ 978 (1293)
+..|+++|++++|++. ++|+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 43 ~~~l~i~nl~~~~~~~--~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGDD--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 3458999999999753 69999999999999999999999999999999999986 6899999999998643 3
Q ss_pred hHHHhhhceEEccccccccccHhhhcCCCCCC--------------------CHHHHHHHHHHhhHHHHHHHccCCcchh
Q 000774 979 LMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH--------------------SDADLWEALERAHLKDAIRRNSLGLDAQ 1038 (1293)
Q Consensus 979 ~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~~--------------------~~~~~~~~l~~~~l~~~i~~lp~gl~~~ 1038 (1293)
...+|+.|+|+||++.+|..|+++|+.+.... .++.+.++++.+++ +.++.+.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL-------WDEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC-------chhhhHH
Confidence 45678899999999999988999999742100 01122333333322 1233445
Q ss_pred hhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEE-EEE
Q 000774 1039 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRI-LLL 1116 (1293)
Q Consensus 1039 ~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i-~vl 1116 (1293)
.+..+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.++.|+|+|||+++.+.. ||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 56777899999999999999999999999999999999999999999999998777899999999999876 9997 567
Q ss_pred eCCeEeeecChhhhhhc
Q 000774 1117 DSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1117 ~~G~i~~~g~~~el~~~ 1133 (1293)
++|++++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999998754
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=335.12 Aligned_cols=202 Identities=26% Similarity=0.441 Sum_probs=172.0
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------e
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 347 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------~ 347 (1293)
..|+++|++..||+ ++.+|+||||+|++||+++|+|+|||||||||++|.|+.+|++|.... +
T Consensus 2 ~~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 2 MMIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred ceEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHH
Confidence 36899999999973 678999999999999999999999999999999999999999984321 3
Q ss_pred cCcEEEEcCCcccc-CccHHHHHccCCC------------CCHH---HHHHHHHHcCChhHHhcCCCCCcccccCCCCCC
Q 000774 348 RGTVAYVPQVSWIF-NATVRDNILFGSA------------FEPA---RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 411 (1293)
Q Consensus 348 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~~------------~~~~---~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~L 411 (1293)
|.+|||++|++.|. ..||.+|++.|.- ++.+ ...++++..++.+..- .+..+|
T Consensus 80 r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~L 148 (258)
T COG3638 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTL 148 (258)
T ss_pred HHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccC
Confidence 45799999999985 7899999988742 2222 2344566666654432 244689
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhh-hcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEE
Q 000774 412 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKE 489 (1293)
Q Consensus 412 SGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~-~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~ 489 (1293)
||||+|||+|||||+++|+++|-|||+|+|||.+.+.+++.+.+. ...|.|+|+.-|+++... +||||+-|++|+|++
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE
Confidence 999999999999999999999999999999999999999987764 456899999999999976 589999999999999
Q ss_pred ecChHHHh
Q 000774 490 EGTFEDLS 497 (1293)
Q Consensus 490 ~g~~~~l~ 497 (1293)
.|+.+++.
T Consensus 229 Dg~~~el~ 236 (258)
T COG3638 229 DGPASELT 236 (258)
T ss_pred eCChhhhh
Confidence 99999864
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=358.38 Aligned_cols=218 Identities=23% Similarity=0.372 Sum_probs=180.9
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC--C---CcceEEECCeecCC--CChH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAK--FGLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~--p---~~G~I~i~g~~i~~--~~~~ 980 (1293)
.|+++||+++|+. +++|+|+||+|.+||++||+||||||||||+++|+|+++ | ++|+|.++|.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 3899999999974 369999999999999999999999999999999999975 5 59999999999864 2344
Q ss_pred HHhhhceEEccccccccccHhhhcCCCC---CC-CH----HHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 981 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 981 ~~r~~i~~v~Q~~~lf~~ti~~nl~~~~---~~-~~----~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
.+++.++|+||++.+|..|+++|+.+.. .. .+ +++.++++.+++.+ ++.........+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD-------EVKDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc-------chhhHHhcCcccCCHHHHH
Confidence 5678899999999999889999986321 11 11 12222333333211 2233455667889999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|++.+..
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988667899999999999876 9999999999999999999987
Q ss_pred hcC
Q 000774 1132 SNE 1134 (1293)
Q Consensus 1132 ~~~ 1134 (1293)
...
T Consensus 236 ~~~ 238 (252)
T PRK14255 236 LNP 238 (252)
T ss_pred cCC
Confidence 543
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=357.20 Aligned_cols=219 Identities=26% Similarity=0.452 Sum_probs=181.1
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECC------eecCCCChHH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG------FDIAKFGLMD 981 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g------~~i~~~~~~~ 981 (1293)
.+.++|++++|++. ++|+|+||++.+||++||+||||||||||+++|+|+++|++|+|.++| .++...+...
T Consensus 10 ~i~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYINDK--AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCCc--eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 48999999999753 699999999999999999999999999999999999999997666665 6666666777
Q ss_pred HhhhceEEccccccccc-cHhhhcCCCC---CC-CHHHH----HHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 000774 982 LRKILGIIPQSPVLFSG-TVRFNLDPFS---EH-SDADL----WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052 (1293)
Q Consensus 982 ~r~~i~~v~Q~~~lf~~-ti~~nl~~~~---~~-~~~~~----~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkq 1052 (1293)
+|+.++|+||++.+|.+ |+++|+.+.. .. .+++. .++++..++.+.+ ....+..+..|||||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 160 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQQ 160 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHHH
Confidence 88899999999999875 9999997421 11 12222 2223332221111 12345567789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1053 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|++||||++.+|++|||||||++||+.+++.+.+.|.++..++|+|+|||+++++.. ||++++|++|++++.|+++++.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999988667999999999999965 9999999999999999999998
Q ss_pred hcCC
Q 000774 1132 SNEG 1135 (1293)
Q Consensus 1132 ~~~~ 1135 (1293)
+...
T Consensus 241 ~~~~ 244 (257)
T PRK14246 241 TSPK 244 (257)
T ss_pred hCCC
Confidence 6543
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=351.14 Aligned_cols=213 Identities=29% Similarity=0.510 Sum_probs=187.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 351 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i 351 (1293)
.|+++|++++|+. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .+..+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 4889999999962 357999999999999999999999999999999999999999984321 13459
Q ss_pred EEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCC
Q 000774 352 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 430 (1293)
Q Consensus 352 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~ 430 (1293)
+|++|++.+|..|++||+.++.. ....++.++++.+++.+.++.+|.++.+.++....+||||||||++|||||+.+|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998899999998753 33456677788889999999999888888888899999999999999999999999
Q ss_pred EEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHhhc
Q 000774 431 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 431 illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
++||||||++||+.+.+++.+.+... .+++|+|+|||+++.+..||++++|++|++++.|+.+++..+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999998866544 468999999999999988999999999999999988877543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=353.30 Aligned_cols=213 Identities=27% Similarity=0.451 Sum_probs=177.7
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++|++++|++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 468999999964 38999999999999999999999999999999999999999999999999876554 3678999
Q ss_pred Ecccccccc-ccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 989 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 989 v~Q~~~lf~-~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
+||++.+|. .|+++|+.+.. ..+..+.. ..+.+.++. .|+.........+||||||||++||||++++|
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 148 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIE-----RKVLEIAEM--LGIDHLLNRKPETLSGGEQQRVAIARALVVNP 148 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHH--cCChhHHhcCcccCCHHHHHHHHHHHHHHcCC
Confidence 999999885 59999996321 11111111 112223333 24444455566789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhc
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1133 (1293)
++|+|||||++||+.+.+.+++.|++... ++|+|++||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 149 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 149 KILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999999999999998653 7999999999999876 999999999999999999988754
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=332.81 Aligned_cols=206 Identities=28% Similarity=0.402 Sum_probs=172.5
Q ss_pred CcEEEEeeEEEcCCCC-CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------ec
Q 000774 283 PAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IR 348 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~-~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~ 348 (1293)
..++++|+++.|+.+. ..++|+||||+|.+||++||||+||||||||+++|+|+.+|++|.+.. ..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 3589999999997421 115999999999999999999999999999999999999999984322 13
Q ss_pred CcEEEEcCCccc---cCccHHHHHccCC-----CCCHHHHHHHHHHcCChh-HHhcCCCCCcccccCCCCCCChHHHHHH
Q 000774 349 GTVAYVPQVSWI---FNATVRDNILFGS-----AFEPARYEKAIDVTSLQH-DLDLLPGGDVTEIGERGVNISGGQKQRV 419 (1293)
Q Consensus 349 ~~i~~v~Q~~~l---~~~Tv~eni~~g~-----~~~~~~~~~~~~~~~l~~-~~~~l~~g~~t~ig~~g~~LSGGqkqRi 419 (1293)
+.|-+|+|||.- ..-||++-|.-+. +....++.++++.+++.. +++..| .+|||||||||
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRi 150 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRI 150 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHH
Confidence 469999999974 3568888876331 112355788888898865 455666 48999999999
Q ss_pred HHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHh
Q 000774 420 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 497 (1293)
Q Consensus 420 alAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 497 (1293)
||||||..+|++||||||||+||+.....|++.+.+.. ..+-|.|+||||+..+.+ ||||+||++|++++.++.+++.
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 99999999999999999999999999999998666543 346799999999999986 8999999999999999999988
Q ss_pred hc
Q 000774 498 NN 499 (1293)
Q Consensus 498 ~~ 499 (1293)
+.
T Consensus 231 ~~ 232 (252)
T COG1124 231 SH 232 (252)
T ss_pred cC
Confidence 76
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=335.41 Aligned_cols=171 Identities=50% Similarity=0.798 Sum_probs=159.8
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 46899999997542369999999999999999999999999999999999999999999999999988777788889999
Q ss_pred EccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000774 989 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 1068 (1293)
Q Consensus 989 v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLl 1068 (1293)
+||++.+|+.|+.||+ ||||||||++||||++.+|++||
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988998876 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCCe
Q 000774 1069 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGR 1120 (1293)
Q Consensus 1069 LDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~ 1120 (1293)
|||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998876799999999999997899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=348.16 Aligned_cols=207 Identities=27% Similarity=0.418 Sum_probs=184.8
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 351 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i 351 (1293)
.++++|++++|+. .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .+..+
T Consensus 2 ~l~~~~l~~~~~~-~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRP-NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCC-CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 3789999999973 2357999999999999999999999999999999999999999984321 23469
Q ss_pred EEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCE
Q 000774 352 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 431 (1293)
Q Consensus 352 ~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~i 431 (1293)
+|++|++.+++.|++||+.+......+++.++++..++.+.+..+|.|+.+..+..+.+||||||||++|||||+.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999998999999987655566777888888999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEecC
Q 000774 432 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 492 (1293)
Q Consensus 432 llLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~ 492 (1293)
+||||||++||+.+++++.+.+.+. .+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREA-FKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999998866543 45789999999999998899999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=363.32 Aligned_cols=211 Identities=23% Similarity=0.403 Sum_probs=172.5
Q ss_pred CCCcEEEEeeEEEcCCCC--CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------
Q 000774 281 GLPAISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 346 (1293)
Q Consensus 281 ~~~~i~~~~~~~~y~~~~--~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------ 346 (1293)
+.+.|+++|++|+|+... ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|.+..
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 345799999999997421 247999999999999999999999999999999999999999884211
Q ss_pred ----------------ecCcEEEEcCCc--cccCccHHHHHccCCC---CCHH----HHHHHHHHcCChhHHhcCCCCCc
Q 000774 347 ----------------IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDV 401 (1293)
Q Consensus 347 ----------------~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~ 401 (1293)
.++.|+||+|+| ++|+.||+|||.++.. .+.+ ++.+.++..++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------- 167 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD---------- 167 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------
Confidence 134699999998 6888899999998732 2222 2233334443321
Q ss_pred ccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEE
Q 000774 402 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRII 480 (1293)
Q Consensus 402 t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~ 480 (1293)
...+..+.+||||||||++|||||+.+|++|||||||++||+.+++++.+.+.....+|+|+|+|||+++++. .||+|+
T Consensus 168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 1245567899999999999999999999999999999999999999999876555456899999999999875 699999
Q ss_pred EEeCCeEEEecChHHHhhccH
Q 000774 481 LVHEGMVKEEGTFEDLSNNGE 501 (1293)
Q Consensus 481 ~l~~G~i~~~g~~~~l~~~~~ 501 (1293)
+|++|++++.|+++++.....
T Consensus 248 vl~~G~i~~~g~~~~~~~~~~ 268 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTDQH 268 (320)
T ss_pred EEECCEEEEeCCHHHHhcCHH
Confidence 999999999999999876543
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=348.96 Aligned_cols=204 Identities=25% Similarity=0.402 Sum_probs=173.0
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGKQ--TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECCE--EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 4689999999753 6999999999999999999999999999999999999999999999999875321 357999
Q ss_pred Ecccccccc-ccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 989 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 989 v~Q~~~lf~-~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
+||++.+|. .|+++|+.+.. ...+.++.++++..++ +........+||||||||++||||++.+|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDL-----------TNTGKKKAKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCC-----------cHHHhhhHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 59999986321 2223344444444443 33344455789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhh
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1129 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 1129 (1293)
++|||||||++||+.+.+.+++.|++.. .++|+|++||+++.+.. ||||++|++|++++.|++++
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999875 47899999999999866 99999999999999998764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=352.90 Aligned_cols=201 Identities=28% Similarity=0.436 Sum_probs=166.5
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------ecC
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 349 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------~~~ 349 (1293)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+.
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 46899999996 357999999999999999999999999999999999999999884211 234
Q ss_pred cEEEEcCCccccC-ccHHHHHccCCC----CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000774 350 TVAYVPQVSWIFN-ATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420 (1293)
Q Consensus 350 ~i~~v~Q~~~l~~-~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRia 420 (1293)
.|+|++|++.+|. .||+||+.++.. .+. +++.++++..++.+..+ ....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-----------LYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHH
Confidence 6999999998885 599999987521 122 23444566666544332 334589999999999
Q ss_pred HHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhh
Q 000774 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 498 (1293)
Q Consensus 421 lAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 498 (1293)
|||||+.+|+++||||||++||+.+.+.+++.+.+... .|+|+|+|||+++++.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999987655444 38999999999998865 89999999999999999988765
Q ss_pred c
Q 000774 499 N 499 (1293)
Q Consensus 499 ~ 499 (1293)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 4
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=335.88 Aligned_cols=172 Identities=32% Similarity=0.518 Sum_probs=158.3
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCC--hHHHhhhc
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLRKIL 986 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~--~~~~r~~i 986 (1293)
|+++|++++|++. ++++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ....++.+
T Consensus 1 i~~~~l~~~~~~~--~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECCe--EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 4689999999653 6999999999999999999999999999999999999999999999999998765 56678899
Q ss_pred eEEccccccccc-cHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000774 987 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1065 (1293)
Q Consensus 987 ~~v~Q~~~lf~~-ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 1065 (1293)
+|+||++.+|.. |+++|+... ||||||||++|||||+++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998865 999998642 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCe
Q 000774 1066 ILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGR 1120 (1293)
Q Consensus 1066 iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~ 1120 (1293)
++||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999998754 5899999999999986 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=354.72 Aligned_cols=218 Identities=23% Similarity=0.384 Sum_probs=180.1
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCee-----cCCCChHHH
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD-----IAKFGLMDL 982 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~-----i~~~~~~~~ 982 (1293)
.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ +...+....
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGGG--KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCCc--eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 38999999999753 58999999999999999999999999999999999999999999999987 666665432
Q ss_pred ----hhhceEEccccc--cc-cccHhhhcCC----CCCCCHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCCCCChhH
Q 000774 983 ----RKILGIIPQSPV--LF-SGTVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 1050 (1293)
Q Consensus 983 ----r~~i~~v~Q~~~--lf-~~ti~~nl~~----~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~~LSgGq 1050 (1293)
++.++|+||++. ++ ..|+.+|+.. .......+ ....+.++++.+ |++ +..+..+..|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~l~~l--~l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGN-----IRAAAHDWLEEV--EIDPTRIDDLPRAFSGGM 153 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHH-----HHHHHHHHHHHc--CCChhhhhcCchhcCHHH
Confidence 457999999985 22 3477777632 11100111 112345666665 443 46677788999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecCh
Q 000774 1051 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1127 (1293)
Q Consensus 1051 kqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1127 (1293)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988643 7899999999999986 999999999999999999
Q ss_pred hhhhhcC
Q 000774 1128 EELLSNE 1134 (1293)
Q Consensus 1128 ~el~~~~ 1134 (1293)
+++....
T Consensus 234 ~~~~~~~ 240 (253)
T TIGR02323 234 DQVLDDP 240 (253)
T ss_pred HHHhcCC
Confidence 9987543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=355.42 Aligned_cols=227 Identities=24% Similarity=0.370 Sum_probs=185.2
Q ss_pred EEEEEEEEEecC-------CCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChH-
Q 000774 909 IKFEDVVLRYRP-------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM- 980 (1293)
Q Consensus 909 i~~~~v~~~y~~-------~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~- 980 (1293)
|+++||+++|+. ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 899999999973 124699999999999999999999999999999999999999999999999998876653
Q ss_pred --HHhhhceEEccccc--ccc-ccHhhhcCCCC-CCCHHHHHHHHHHhhHHHHHHHccCCcch-hhhcCCCCCChhHHHH
Q 000774 981 --DLRKILGIIPQSPV--LFS-GTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQRQL 1053 (1293)
Q Consensus 981 --~~r~~i~~v~Q~~~--lf~-~ti~~nl~~~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~-~~~~~~~~LSgGqkqr 1053 (1293)
.+|+.++|+||++. ++. .|+.+|+.+.. ...+ +........+.+.++.+ |+++ ..+..+..||||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge~qr 159 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLS--LDKAERLARASEMLRAV--DLDDSVLDKRPPQLSGGQLQR 159 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHc--CCChhHhhCCCccCChHHHHH
Confidence 46788999999983 443 58999874210 0000 00111122345555553 6653 4567788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhh
Q 000774 1054 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130 (1293)
Q Consensus 1054 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1130 (1293)
++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 160 l~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 239 (268)
T PRK10419 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDK 239 (268)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhc
Confidence 9999999999999999999999999999999999998753 7899999999999986 999999999999999999998
Q ss_pred hhcCCChHHH
Q 000774 1131 LSNEGSSFSK 1140 (1293)
Q Consensus 1131 ~~~~~~~~~~ 1140 (1293)
.. .+..|..
T Consensus 240 ~~-~~~~~~~ 248 (268)
T PRK10419 240 LT-FSSPAGR 248 (268)
T ss_pred cC-CCCHHHH
Confidence 75 3444443
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=370.68 Aligned_cols=212 Identities=24% Similarity=0.375 Sum_probs=177.4
Q ss_pred EEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCC----hHHHhhhceE
Q 000774 913 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG----LMDLRKILGI 988 (1293)
Q Consensus 913 ~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~----~~~~r~~i~~ 988 (1293)
|++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....|+.++|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999653 35 999999999999999999999999999999999999999999999986532 2346778999
Q ss_pred Eccccccccc-cHhhhcCCCCC-CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000774 989 IPQSPVLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1066 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~~-~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 1066 (1293)
+||++.+|.. |+++|+.+... ....+. ...+.+.++.+ |++...+..+.+||||||||++|||||+.+|++
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~-----~~~~~~~l~~~--gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~l 152 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSER-----RISFERVIELL--GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRL 152 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHH-----HHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999975 99999975321 111110 11233444443 555666677788999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcCC
Q 000774 1067 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1135 (1293)
Q Consensus 1067 LlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1135 (1293)
|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|++++.|+++++.....
T Consensus 153 llLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 224 (354)
T TIGR02142 153 LLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224 (354)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcC
Confidence 999999999999999999999998753 6899999999999876 99999999999999999999986544
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=353.94 Aligned_cols=214 Identities=25% Similarity=0.394 Sum_probs=174.9
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC----CcceEEECCeecCCCChHHHh
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL----ERGRILIDGFDIAKFGLMDLR 983 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p----~~G~I~i~g~~i~~~~~~~~r 983 (1293)
.++++|++++| + .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++... ...+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 48999999999 3 2699999999999999999999999999999999999999 999999999998632 2234
Q ss_pred hhceEEccccc-ccc--ccHhhhcCC----CC-CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 000774 984 KILGIIPQSPV-LFS--GTVRFNLDP----FS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1055 (1293)
Q Consensus 984 ~~i~~v~Q~~~-lf~--~ti~~nl~~----~~-~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 1055 (1293)
+.++|+||++. .|. .|+.+|+.. .. ...++++.+.++..++.+ .++.++..+.+||||||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLEN--------AARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCC--------hhhhhhcCCcccCHHHHHHHH
Confidence 67999999985 343 377776532 11 112233444444433321 112456677889999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1056 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999998653 6899999999999866 99999999999999999999976
Q ss_pred cC
Q 000774 1133 NE 1134 (1293)
Q Consensus 1133 ~~ 1134 (1293)
..
T Consensus 231 ~~ 232 (254)
T PRK10418 231 AP 232 (254)
T ss_pred CC
Confidence 54
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=322.37 Aligned_cols=212 Identities=27% Similarity=0.441 Sum_probs=184.5
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+.+|++++-.++ .+|++|||+++|||++||+||||||||||+|.|+|.+.|++|++.++|.++..+++.++-++-++
T Consensus 2 i~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 7889999987654 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ecccccc-ccccHhhhcCCCC-------CCCHHH--HHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000774 989 IPQSPVL-FSGTVRFNLDPFS-------EHSDAD--LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1058 (1293)
Q Consensus 989 v~Q~~~l-f~~ti~~nl~~~~-------~~~~~~--~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 1058 (1293)
+||+..+ |.-|++|-+.+.. +..+++ ..+++.++++..+-.+ .-..||||||||+.|||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----------~y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-----------DYRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-----------chhhcCchHHHHHHHHH
Confidence 9999975 7789999775322 111233 5667777777665443 23469999999999999
Q ss_pred Hhcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhh
Q 000774 1059 ALLR------RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130 (1293)
Q Consensus 1059 all~------~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1130 (1293)
.|.. ++++|+||||||+||+.....+.+..+++. .++.|+.|-||++.... ||||++|.+||++..|+|++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 9985 346999999999999999999999999976 47899999999999766 999999999999999999999
Q ss_pred hhc
Q 000774 1131 LSN 1133 (1293)
Q Consensus 1131 ~~~ 1133 (1293)
+..
T Consensus 229 lt~ 231 (259)
T COG4559 229 LTD 231 (259)
T ss_pred cCH
Confidence 853
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=348.02 Aligned_cols=206 Identities=25% Similarity=0.396 Sum_probs=172.2
Q ss_pred EEEEEEEEEecCC--CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChH---HHh
Q 000774 909 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLR 983 (1293)
Q Consensus 909 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r 983 (1293)
++++|+++.|++. ..++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++...++. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999642 14699999999999999999999999999999999999999999999999998776643 357
Q ss_pred hhceEEcccccccc-ccHhhhcCCCC----CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000774 984 KILGIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1058 (1293)
Q Consensus 984 ~~i~~v~Q~~~lf~-~ti~~nl~~~~----~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 1058 (1293)
+.++|+||++.+|. .|+.+|+.+.. ....++..+ .+.+.++.+ |++......+.+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE-----RARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 88999999999987 59999986422 112211111 123344443 4555556666789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhccCEEEEEeCCeE
Q 000774 1059 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRV 1121 (1293)
Q Consensus 1059 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i 1121 (1293)
||+.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++....||+|++|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999998753 7999999999997666999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=333.58 Aligned_cols=170 Identities=31% Similarity=0.575 Sum_probs=156.4
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|++++|++. ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+|+.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4689999999753 6999999999999999999999999999999999999999999999999987655 567788999
Q ss_pred Eccccccccc-cHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000774 989 IPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1067 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 1067 (1293)
+||++.+|.+ |+++|+. ||||||||++|||||+.+|++|
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999988876 9998862 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeE
Q 000774 1068 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 1121 (1293)
Q Consensus 1068 lLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 1121 (1293)
||||||++||+.+.+.+.+.|++.. ++.|+|++||+.+++.. ||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999875 46899999999999885 999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=366.93 Aligned_cols=203 Identities=28% Similarity=0.420 Sum_probs=173.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 353 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------~~~~i~~ 353 (1293)
.|+++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|.... .++.|||
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4899999999942 367999999999999999999999999999999999999999984321 1246999
Q ss_pred EcCCcccc-CccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 000774 354 VPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 425 (1293)
Q Consensus 354 v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral 425 (1293)
|+|++.+| +.||+|||.|+.. .+ .+++.++++..++.+..+..| .+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 99999998 5799999998742 12 234566777788876665555 58999999999999999
Q ss_pred hcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhc
Q 000774 426 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 426 ~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
+.+|++||||||||+||+.+++++.+.+.+...+ |.|+|+|||+++.+. .||+|++|++|++++.|+++++.++
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999999999998876654443 899999999998875 5899999999999999999998765
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=403.44 Aligned_cols=210 Identities=24% Similarity=0.324 Sum_probs=149.2
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHH---------HHhcCCCCCcc--------eEEEC
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN---------TLFRIVELERG--------RILID 970 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~---------~l~g~~~p~~G--------~I~i~ 970 (1293)
.++++|++. ..|+|+||+|++||++||.|+||||||||++ .|.|...|..+ -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 378888752 3699999999999999999999999999999 55665333111 23455
Q ss_pred CeecCCCCh----H------HHh---------hhce-----EEccc------------------c---------------
Q 000774 971 GFDIAKFGL----M------DLR---------KILG-----IIPQS------------------P--------------- 993 (1293)
Q Consensus 971 g~~i~~~~~----~------~~r---------~~i~-----~v~Q~------------------~--------------- 993 (1293)
-.++..-+. . .+| ++.| +.++. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 444432111 1 333 1222 22332 0
Q ss_pred -----ccccc-cHhhhcCCCCC-C-----CHHHHHHHHHHhhHHHHHHHccCCcchh-hhcCCCCCChhHHHHHHHHHHh
Q 000774 994 -----VLFSG-TVRFNLDPFSE-H-----SDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 994 -----~lf~~-ti~~nl~~~~~-~-----~~~~~~~~l~~~~l~~~i~~lp~gl~~~-~~~~~~~LSgGqkqrl~lAral 1060 (1293)
..+.+ ||.|+|.+... . ...++.+. + +.++. .|++.. .++...+||||||||++|||||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~-----l-~~L~~--vGL~~l~l~q~~~tLSGGE~QRV~LAraL 824 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEK-----I-HALCS--LGLDYLPLGRPLSSLSGGEIQRLKLAYEL 824 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHH-----H-HHHHH--cCCcchhhcCccccCCHHHHHHHHHHHHH
Confidence 12333 66666653210 0 01111111 1 23333 366654 6778889999999999999999
Q ss_pred c---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhccCEEEEEe------CCeEeeecChhhh
Q 000774 1061 L---RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLD------SGRVLEYDTPEEL 1130 (1293)
Q Consensus 1061 l---~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~------~G~i~~~g~~~el 1130 (1293)
+ .+|++|||||||++||+.+.+.+.+.|+++. .+.|||+|||+++.+..||+|++|. +|++++.|+|+++
T Consensus 825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 8 6999999999999999999999999999875 4789999999999996799999996 7999999999999
Q ss_pred hh
Q 000774 1131 LS 1132 (1293)
Q Consensus 1131 ~~ 1132 (1293)
..
T Consensus 905 ~~ 906 (1809)
T PRK00635 905 IH 906 (1809)
T ss_pred Hh
Confidence 75
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=342.63 Aligned_cols=206 Identities=34% Similarity=0.574 Sum_probs=179.9
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 351 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i 351 (1293)
.++++|+++.|+. .++++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|.... .+..+
T Consensus 2 ~l~~~~l~~~~~~-~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPN-QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCC-CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 4789999999963 2357999999999999999999999999999999999999999884321 12369
Q ss_pred EEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCC
Q 000774 352 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 430 (1293)
Q Consensus 352 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~ 430 (1293)
+|++|++.++..|+.||+.++.. ....++.+.++..++.+.++..|.+++|.+.....+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988899999987643 34456677888889999899999999999888889999999999999999999999
Q ss_pred EEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEec
Q 000774 431 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 491 (1293)
Q Consensus 431 illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g 491 (1293)
++||||||++||+.+.+.+++.+.+.. +++|+|++||+++++..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999988665543 348999999999998889999999999988654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=344.40 Aligned_cols=201 Identities=24% Similarity=0.380 Sum_probs=168.0
Q ss_pred EEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCC----ChHHHhhhceE
Q 000774 913 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMDLRKILGI 988 (1293)
Q Consensus 913 ~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~----~~~~~r~~i~~ 988 (1293)
||+++|++. .+ |+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++... +....++.++|
T Consensus 5 ~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 899999763 34 99999999 99999999999999999999999999999999999988642 23346778999
Q ss_pred Ecccccccc-ccHhhhcCCCCC-CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000774 989 IPQSPVLFS-GTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1066 (1293)
Q Consensus 989 v~Q~~~lf~-~ti~~nl~~~~~-~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 1066 (1293)
+||++.+|. .|+++|+.+... .... .....+.++++.+ |++......+.+||||||||++||||++.+|++
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~-----~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 152 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKRNR-----EDRISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAAQPEL 152 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCCHH-----HHHHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 499999864321 1111 1112234455553 566666777789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1067 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1067 LlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++++.. ||++++|++|++++.|
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 153 LLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999998753 7899999999999876 9999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=348.23 Aligned_cols=212 Identities=25% Similarity=0.386 Sum_probs=171.1
Q ss_pred EEEEEEEEEecCC--CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC---CCcceEEECCeecCCCChHHHh
Q 000774 909 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLR 983 (1293)
Q Consensus 909 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~r 983 (1293)
+.++||+++|++. .+++++|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++. ....|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999764 2579999999999999999999999999999999999999 99999999999875 34578
Q ss_pred hhceEEccccccccc-cHhhhcCCCCCC-CHHHHHHHHHHhhHHH-HHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 984 KILGIIPQSPVLFSG-TVRFNLDPFSEH-SDADLWEALERAHLKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 984 ~~i~~v~Q~~~lf~~-ti~~nl~~~~~~-~~~~~~~~l~~~~l~~-~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
+.++|+||++.+|.+ |+++|+.+.... ......+........+ .++. .++..........||||||||++|||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRD--LALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHh--hcchhhhcccccCcCHHHHHHHHHHHHH
Confidence 889999999999987 999999742110 0000001111111122 2332 2444445566778999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCc-chhhc-cCEEEEEeCCeEeeec
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRL-NTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~-~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
+.+|++|||||||++||+.+...+.+.|++.. .+.|+|++||++ +.+.. ||++++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999865 468999999998 46655 9999999999998865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=350.16 Aligned_cols=200 Identities=29% Similarity=0.450 Sum_probs=171.8
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECCc--eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 38999999999753 699999999999999999999999999999999999999999999986 24699
Q ss_pred EEcccccccc---ccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 988 IIPQSPVLFS---GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 988 ~v~Q~~~lf~---~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
|+||++.++. .|+++|+.......++++.++++..++.+.+ ......||||||||++|||||+.+|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLI-----------DAPMQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHH-----------hCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998764 3788887543333455566666666655443 3345689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
++|||||||++||+.+.+.+++.|+++.+ ++|+|+|||+++.+.. ||+|++|++ ++++.|+++++..
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999999999999999999988653 7899999999999866 999999965 7999999999864
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=364.62 Aligned_cols=203 Identities=26% Similarity=0.384 Sum_probs=172.2
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------ecCcEE
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 352 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------~~~~i~ 352 (1293)
..|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .++.||
T Consensus 5 ~~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEEC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 4699999999996 357999999999999999999999999999999999999999984321 134699
Q ss_pred EEcCCcccc-CccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000774 353 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 424 (1293)
Q Consensus 353 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAra 424 (1293)
||+|++.+| ..||+|||.|+.. .+ .+++.++++..++.+..+.. ..+|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 999999998 5799999998732 12 23455667777776554433 35899999999999999
Q ss_pred hhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhc
Q 000774 425 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 425 l~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
|+.+|++||||||||+||+.+++++.+.+.+... .|.|+|+|||+++++. .||+|++|++|+++..|+++++..+
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999886655433 3899999999999875 5899999999999999999998765
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=355.99 Aligned_cols=206 Identities=27% Similarity=0.401 Sum_probs=173.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 351 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i 351 (1293)
.++++|++++|+....+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.... .++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 589999999997432356999999999999999999999999999999999999999984311 23469
Q ss_pred EEEcCCcc--ccCccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000774 352 AYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 422 (1293)
Q Consensus 352 ~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialA 422 (1293)
||++|+|. ++..||+|||.++.. .+. +++.++++..++.+..+..+ .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999984 467899999998732 222 34566777777766555433 58999999999999
Q ss_pred HHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHhhcc
Q 000774 423 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 500 (1293)
Q Consensus 423 ral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 500 (1293)
|||+.+|++|||||||++||+.+.+.+.+.+.....+ |+|+|+|||+++.+..||+|++|++|+++..|+++++....
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 9999999999999999999999999998866554443 89999999999998889999999999999999998887654
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=337.95 Aligned_cols=185 Identities=25% Similarity=0.379 Sum_probs=162.8
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcC--CCCCcceEEECCeecCCCChHHH-hhh
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDL-RKI 985 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~-r~~ 985 (1293)
++++|++++|++. ++++|+||++++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++...+.... |.+
T Consensus 1 l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGGK--EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCCE--EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 4689999999743 699999999999999999999999999999999999 58999999999999988776554 456
Q ss_pred ceEEccccccccc-cHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 986 LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 986 i~~v~Q~~~lf~~-ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
++|+||++.+|.+ |+++++ . ....+||||||||++||||++.+|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------~-----------~~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------R-----------YVNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------h-----------hccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999998875 565544 0 012469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecCcchhh--ccCEEEEEeCCeEeeecChhhhh
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTII--DCDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~--~~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
++|||||||++||+.+.+.+++.|++..+ ++|+|++||+++.+. .||++++|++|++++.| +.|+.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999999998754 789999999999988 59999999999999999 55554
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=344.02 Aligned_cols=228 Identities=25% Similarity=0.445 Sum_probs=185.1
Q ss_pred EEEEEEEEEecCC--CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC-C----CcceEEECCeecCCCChHH
Q 000774 909 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-L----ERGRILIDGFDIAKFGLMD 981 (1293)
Q Consensus 909 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-p----~~G~I~i~g~~i~~~~~~~ 981 (1293)
++++|++..|... ...+++||||+|++||++||||.|||||||+.++|+|+++ | .+|+|.++|.|+.+++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 6889999999643 2368999999999999999999999999999999999998 4 5799999999999999875
Q ss_pred Hhh----hceEEccccc-cccc--cHhhhcC----CCCCC-C----HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCC
Q 000774 982 LRK----ILGIIPQSPV-LFSG--TVRFNLD----PFSEH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1045 (1293)
Q Consensus 982 ~r~----~i~~v~Q~~~-lf~~--ti~~nl~----~~~~~-~----~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~ 1045 (1293)
+|+ .|++|||+|. -++- ||.+.+. ..... + .++..+.++.+++.+ .+..+..-+.+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~--------~~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPD--------PERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCC--------HHHHHhhCCcc
Confidence 433 5999999994 2332 5554432 11111 1 123444444444422 22345666789
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEe
Q 000774 1046 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVL 1122 (1293)
Q Consensus 1046 LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~ 1122 (1293)
||||||||+.||-||+.+|++||.||||++||..+.+.|.+.|+++.+ +.|+|+||||+..+.. ||||+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999998764 7999999999999877 9999999999999
Q ss_pred eecChhhhhhcCCChHHHHHHh
Q 000774 1123 EYDTPEELLSNEGSSFSKMVQS 1144 (1293)
Q Consensus 1123 ~~g~~~el~~~~~~~~~~l~~~ 1144 (1293)
|.|+.+++..++...|.+..-+
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll~ 255 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLLN 255 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHHH
Confidence 9999999998877777755443
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=346.35 Aligned_cols=468 Identities=19% Similarity=0.199 Sum_probs=309.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc-----hhHHHHHhcchhhHHHHHHH
Q 000774 626 YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPL-----GRIINRFAKDLGDIDRNVAV 700 (1293)
Q Consensus 626 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~ff~~~~~-----G~il~rls~Di~~id~~~~~ 700 (1293)
...+|..++.+.+++.....++......+.-.-+-+.++++.+.....|+..... -..=+|+..|+...-.....
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~ 167 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLD 167 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHH
Confidence 3445666677777777778888888888888888888999988877444333221 23456888888887766555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Q 000774 701 FVNMFMGQVSQLLSTFVLIGIV---------------STMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQ 765 (1293)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1293)
....++.++.++++...+..-. ..++.++++..++....+...+.+....+........+.+...
T Consensus 168 l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~ 247 (604)
T COG4178 168 LSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYS 247 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHH
Confidence 5555666555554444333311 1222222222222222222233333233333333334455556
Q ss_pred HHHHHccHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhh
Q 000774 766 FGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR---WLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAF 842 (1293)
Q Consensus 766 ~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (1293)
+...-++...|-.|+.|+......++..+...+.......... |.+.....++.++-++. ....+..+..+
T Consensus 248 Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li-~ap~~f~g~i~----- 321 (604)
T COG4178 248 LVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILI-AAPRYFSGQIT----- 321 (604)
T ss_pred HHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHh-ccHhhhcCcCh-----
Confidence 6667778888888988876666555555444433222222222 22222222222111111 11113334433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------CCCCccccCCCCCCCCCCCCccEEEEEEEE
Q 000774 843 ASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL------PSEAPLVIESNRPPPGWPSSGSIKFEDVVL 916 (1293)
Q Consensus 843 ~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Rl~~~~~~------~~e~~~~~~~~~~~~~~~~~g~i~~~~v~~ 916 (1293)
.+.+.........+...+.++...+..+........|+.++.+. +.+.+.... .........+..|+++|++.
T Consensus 322 ~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l 400 (604)
T COG4178 322 FGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSL 400 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeE
Confidence 22233333344455667778888888888888889998888642 111111000 00000000145699999999
Q ss_pred EecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEEccccccc
Q 000774 917 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 996 (1293)
Q Consensus 917 ~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 996 (1293)
.-++.. ..+++.||+|++||.+-|.||||||||||+|+|+|+++--+|+|..-. -..+-|+||.|.+-
T Consensus 401 ~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p 468 (604)
T COG4178 401 RTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLP 468 (604)
T ss_pred ECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCC
Confidence 987654 689999999999999999999999999999999999999999986541 13578999999999
Q ss_pred cccHhhhcCC-CC--CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCC
Q 000774 997 SGTVRFNLDP-FS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 1073 (1293)
Q Consensus 997 ~~ti~~nl~~-~~--~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpT 1073 (1293)
.||+||-|.+ .. ..+|+++.++|.+|++.++++++. +.+. -...||+||||||++||.|+++|++++|||+|
T Consensus 469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~-~~~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEAT 543 (604)
T COG4178 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLD-EEDR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543 (604)
T ss_pred CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHh-ccCc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecch
Confidence 9999998863 22 268999999999999999999963 2222 33469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEe
Q 000774 1074 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD 1117 (1293)
Q Consensus 1074 s~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~ 1117 (1293)
|+||++++..+++.+++..++.|+|-|+||.....-.++.+-+.
T Consensus 544 sALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 544 SALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999999999989999999999987766666655554
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=356.44 Aligned_cols=206 Identities=29% Similarity=0.461 Sum_probs=170.6
Q ss_pred cEEEEeeEEEcCCCC--CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------
Q 000774 284 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 346 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~--~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~--------------- 346 (1293)
.|+++|++|+|+... +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|....
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999996421 236999999999999999999999999999999999999999985321
Q ss_pred ---------------------ecCcEEEEcCCc--cccCccHHHHHccCCC---CCH----HHHHHHHHHcCCh-hHHhc
Q 000774 347 ---------------------IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQ-HDLDL 395 (1293)
Q Consensus 347 ---------------------~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~-~~~~~ 395 (1293)
+++.||||+|+| .+|..||+|||.|+.. .+. +++.++++.+++. +..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~- 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ- 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-
Confidence 134599999986 5788899999998732 222 3445666666664 2222
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-
Q 000774 396 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS- 474 (1293)
Q Consensus 396 l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~- 474 (1293)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.+......|+|+|+|||+++++.
T Consensus 161 ----------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 161 ----------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 344689999999999999999999999999999999999999998866554456899999999999875
Q ss_pred hCCeEEEEeCCeEEEecChHHHhhcc
Q 000774 475 QVDRIILVHEGMVKEEGTFEDLSNNG 500 (1293)
Q Consensus 475 ~~d~i~~l~~G~i~~~g~~~~l~~~~ 500 (1293)
.||||++|++|++++.|+++++.+..
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSDN 256 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcCH
Confidence 58999999999999999999987654
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=338.50 Aligned_cols=189 Identities=26% Similarity=0.373 Sum_probs=161.2
Q ss_pred EEEEEEEEEecCC--CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCC---CCcceEEECCeecCCCChHHHh
Q 000774 909 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLR 983 (1293)
Q Consensus 909 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~r 983 (1293)
+.++||+|.|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+ ...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 7899999999742 4579999999999999999999999999999999999999 89999999999987654 3567
Q ss_pred hhceEEccccccccc-cHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 984 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 984 ~~i~~v~Q~~~lf~~-ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
+.++|+||++.+|.. |+++|+.+.... . ..+....||||||||++|||||+.
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~------------~---------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRC------------K---------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhh------------c---------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 789999999988865 999998642100 0 223446799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEe-cCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIA-HRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vt-H~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
+|++|||||||++||+++++.+++.|++..+ ++|+|+++ |+.+.+.. ||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999998754 46766655 55567655 9999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=351.92 Aligned_cols=209 Identities=28% Similarity=0.408 Sum_probs=170.7
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 38999999999633 369999999999999999999999999999999999999999999999998742 11234699
Q ss_pred EEcccccc---ccccHhhhcCCCC--------CCC---HHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 000774 988 IIPQSPVL---FSGTVRFNLDPFS--------EHS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1053 (1293)
Q Consensus 988 ~v~Q~~~l---f~~ti~~nl~~~~--------~~~---~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 1053 (1293)
|+||++.+ +..++++|+.... ... ++.+.++++.. |+.........+||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARV-----------DMVEFRHRQIGELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHc-----------CChhHhcCCcccCCHHHHHH
Confidence 99999865 3447888875310 000 11233333433 33334445567899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1054 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1054 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999999875 47899999999998866 9999777 89999999999986
Q ss_pred h
Q 000774 1132 S 1132 (1293)
Q Consensus 1132 ~ 1132 (1293)
+
T Consensus 230 ~ 230 (272)
T PRK15056 230 T 230 (272)
T ss_pred C
Confidence 3
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=331.71 Aligned_cols=177 Identities=33% Similarity=0.533 Sum_probs=157.4
Q ss_pred EEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEE
Q 000774 910 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 989 (1293)
Q Consensus 910 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 989 (1293)
+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++..+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999975 3699999999999999999999999999999999999999999999999999888888888889999
Q ss_pred ccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000774 990 PQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 1069 (1293)
Q Consensus 990 ~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlL 1069 (1293)
|| +++..++.+++ ...+.+||||||||++||||++.+|++|||
T Consensus 79 ~q--------------------------~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLA-----------DRPFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 33444444332 334568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1070 DEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1070 DEpTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999998754 6899999999999865 9999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=363.60 Aligned_cols=204 Identities=28% Similarity=0.415 Sum_probs=173.1
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------ecCcEE
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 352 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------~~~~i~ 352 (1293)
..|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|.... .++.||
T Consensus 3 ~~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig 79 (353)
T TIGR03265 3 PYLSIDNIRKRFG---AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYG 79 (353)
T ss_pred cEEEEEEEEEEeC---CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 3589999999996 356999999999999999999999999999999999999999984322 134699
Q ss_pred EEcCCcccc-CccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000774 353 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 424 (1293)
Q Consensus 353 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAra 424 (1293)
||+|++.+| ..||+|||.|+.. .+ .+++.++++..++.+..+.. ..+|||||||||+||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~-----------~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKY-----------PGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 999999998 5799999998732 12 23456667777766554433 46899999999999999
Q ss_pred hhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhcc
Q 000774 425 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 500 (1293)
Q Consensus 425 l~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 500 (1293)
|+.+|+++|||||||+||+.+++++.+.+.+...+ |.|+|+|||+++++. .||+|++|++|++++.|+++++.++.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999998877654443 899999999999875 58999999999999999999987653
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=355.27 Aligned_cols=207 Identities=28% Similarity=0.449 Sum_probs=170.0
Q ss_pred cEEEEeeEEEcCCCC--CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCce--------------ee
Q 000774 284 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA--------------VI 347 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~--~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~--------------~~ 347 (1293)
.|+++|++|+|+... ++++|+||||+|++||++||+|+||||||||+++|+|+++|++|... ..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 388999999996321 25799999999999999999999999999999999999999988431 12
Q ss_pred cCcEEEEcCCc--cccCccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHH
Q 000774 348 RGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 418 (1293)
Q Consensus 348 ~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqR 418 (1293)
+..||||||+| .+|+.||+|||.++.. .+. +++.++++.+++.. .+........||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHH
Confidence 34699999998 5678999999998631 222 23455666666641 011234457899999999
Q ss_pred HHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHH
Q 000774 419 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 496 (1293)
Q Consensus 419 ialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 496 (1293)
++|||||+.+|++|||||||++||+.+.+++++.+..... .|+|+|+|||+++++. .||||++|++|++++.|+++++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999986655444 3899999999999985 5999999999999999999988
Q ss_pred hhc
Q 000774 497 SNN 499 (1293)
Q Consensus 497 ~~~ 499 (1293)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13637 233 FKE 235 (287)
T ss_pred HhC
Confidence 654
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=335.85 Aligned_cols=182 Identities=29% Similarity=0.470 Sum_probs=160.5
Q ss_pred cEEEEEEEEEecCC----CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCC--CCCcceEEECCeecCCCChHH
Q 000774 908 SIKFEDVVLRYRPE----LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMD 981 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~----~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p~~G~I~i~g~~i~~~~~~~ 981 (1293)
.++++||+++|+.. ..++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 38999999999752 246999999999999999999999999999999999999 9999999999998864 35
Q ss_pred HhhhceEEccccccccc-cHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 000774 982 LRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 982 ~r~~i~~v~Q~~~lf~~-ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
.++.++|+||++.+|.. |+++|+.+.. . + ..||||||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~--~-------------------~~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------K--L-------------------RGLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------H--h-------------------ccCCHHHHHHHHHHHHH
Confidence 67889999999988865 9999875210 0 0 06999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcc-hhhc-cCEEEEEeCCeEeeec
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN-TIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1061 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~-~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++ .+.. ||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999875 4789999999997 5654 9999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=353.39 Aligned_cols=206 Identities=25% Similarity=0.433 Sum_probs=169.6
Q ss_pred EEEEeeEEEcCCCC--CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------------
Q 000774 285 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 346 (1293)
Q Consensus 285 i~~~~~~~~y~~~~--~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------- 346 (1293)
|+++|++|+|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997321 136999999999999999999999999999999999999999984211
Q ss_pred ecCcEEEEcCCc--cccCccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHH
Q 000774 347 IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 417 (1293)
Q Consensus 347 ~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkq 417 (1293)
.+..||||+|+| .+|..||.||+.|+.. .+. +++.++++..++.+.+ ......+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHHH
Confidence 234699999998 6888899999998732 122 2345556666664211 12345689999999
Q ss_pred HHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHH
Q 000774 418 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 496 (1293)
Q Consensus 418 RialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 496 (1293)
|++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|+|||+++++. .||||++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999998866544446899999999999885 5999999999999999999998
Q ss_pred hhcc
Q 000774 497 SNNG 500 (1293)
Q Consensus 497 ~~~~ 500 (1293)
..+.
T Consensus 232 ~~~~ 235 (288)
T PRK13643 232 FQEV 235 (288)
T ss_pred HcCH
Confidence 7643
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=361.72 Aligned_cols=204 Identities=28% Similarity=0.423 Sum_probs=169.8
Q ss_pred EEEEeeEEEcCCCC-CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------ec
Q 000774 285 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 348 (1293)
Q Consensus 285 i~~~~~~~~y~~~~-~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------~~ 348 (1293)
|+++|++|+|+.+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 367999999999999999999999999999999999999999984321 13
Q ss_pred CcEEEEcCCcccc-CccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000774 349 GTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420 (1293)
Q Consensus 349 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRia 420 (1293)
..|||++|++.+| +.||+||+.++.. .+. +++.+.++..++.+..+ ....+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-----------RYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 5699999999987 5799999987521 222 23445566666654433 334689999999999
Q ss_pred HHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhh
Q 000774 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 498 (1293)
Q Consensus 421 lAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 498 (1293)
|||||+.+|++|||||||++||+.+.+.+++.+.+... .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999987665443 38999999999999875 89999999999999999999876
Q ss_pred c
Q 000774 499 N 499 (1293)
Q Consensus 499 ~ 499 (1293)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=308.24 Aligned_cols=194 Identities=26% Similarity=0.388 Sum_probs=167.7
Q ss_pred CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEEccccccccccHh
Q 000774 922 LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVR 1001 (1293)
Q Consensus 922 ~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 1001 (1293)
..++|+++||++.+||.++|.||||||||||+|.++-+..|++|++++.|.|++.+++..+|++|+||-|.|.||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCC-CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 000774 1002 FNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1080 (1293)
Q Consensus 1002 ~nl~~~~~~-~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t 1080 (1293)
+|+.+-... .+.. .+..+.+++.++. -.++.+.+...+||||||||++|+|-|.--|+||+||||||+||+.+
T Consensus 95 DNlifP~~~r~rr~-----dr~aa~~llar~~-l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~n 168 (223)
T COG4619 95 DNLIFPWQIRNRRP-----DRAAALDLLARFA-LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168 (223)
T ss_pred hccccchHHhccCC-----ChHHHHHHHHHcC-CchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhh
Confidence 999642111 0000 1122334444432 23466777888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc--CCcEEEEEecCcch-hhccCEEEEEeCCeE
Q 000774 1081 DALIQKTIREEF--KSCTMLIIAHRLNT-IIDCDRILLLDSGRV 1121 (1293)
Q Consensus 1081 ~~~i~~~l~~~~--~~~tvi~vtH~~~~-~~~~d~i~vl~~G~i 1121 (1293)
++.|.+.|.++. ++..+++||||-+. +..+|+++-+..|++
T Consensus 169 kr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 169 KRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred HHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 999999999987 35899999999998 666999999999876
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=361.93 Aligned_cols=203 Identities=29% Similarity=0.422 Sum_probs=173.3
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------ecCcEE
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 352 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------~~~~i~ 352 (1293)
+.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .++.||
T Consensus 13 ~~L~l~~l~~~~~---~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 13 PLVELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred ceEEEEEEEEEEC---CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 4699999999996 357999999999999999999999999999999999999999884321 124599
Q ss_pred EEcCCcccc-CccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000774 353 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 424 (1293)
Q Consensus 353 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAra 424 (1293)
||+|++.+| ..||+|||.|+.. .+ .+++.++++..++.+..+..| .+|||||||||+||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 999999998 6699999998742 12 234566677777776666555 5899999999999999
Q ss_pred hhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhc
Q 000774 425 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 425 l~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
|+.+|++|||||||++||+.+++++.+.+.+... .|.|+|+|||+++++. .+|+|++|++|++++.|+++++..+
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999887665443 3899999999999865 5899999999999999999998765
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=344.04 Aligned_cols=202 Identities=31% Similarity=0.457 Sum_probs=166.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 353 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------~~~~i~~ 353 (1293)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .++.++|
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGF 78 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEE
Confidence 4789999999963 57999999999999999999999999999999999999999884321 1246999
Q ss_pred EcCCcccc-CccHHHHHccCCCC-------CH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000774 354 VPQVSWIF-NATVRDNILFGSAF-------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 421 (1293)
Q Consensus 354 v~Q~~~l~-~~Tv~eni~~g~~~-------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRial 421 (1293)
++|++.++ ..||+||+.++... +. +++.+.++..++.+..+ ....+||||||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-----------RYPAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHH
Confidence 99999887 57999999876321 11 22344555555543333 3346899999999999
Q ss_pred HHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhhc
Q 000774 422 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 422 Aral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
||||+.+|+++||||||++||+.+.+.+.+.+.+...+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 99999999999999999999999999998866554443 7899999999998764 899999999999999999887643
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=331.89 Aligned_cols=172 Identities=29% Similarity=0.473 Sum_probs=155.5
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCCh-HHHhhhc
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRKIL 986 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~~i 986 (1293)
.++++|++++| +++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ ...|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 38999999998 7999999999999999999999999999999999999999999999999988764 3467789
Q ss_pred eEEcccc---ccc-cccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 987 GIIPQSP---VLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 987 ~~v~Q~~---~lf-~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
+|+||++ .++ ..|+++|+.+... ||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 344 4699999864200 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeE
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 1121 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 1121 (1293)
+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++++.. ||++++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999875 47899999999999877 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=356.63 Aligned_cols=203 Identities=26% Similarity=0.414 Sum_probs=168.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-----------ecCcE
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTV 351 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-----------~~~~i 351 (1293)
..|+++|++++|+ ++.+|+||||+|++||++||+||||||||||+++|+|+++|++|.... .+..|
T Consensus 6 ~~i~i~~l~k~~~---~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEEC---CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 4699999999996 357999999999999999999999999999999999999999984321 23569
Q ss_pred EEEcCCcccc-CccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000774 352 AYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 423 (1293)
Q Consensus 352 ~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAr 423 (1293)
|||||++.++ ..|++||+.+... .+. ++..++++.+++.+..+ ....+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-----------AKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-----------CchhhCCHHHHHHHHHHH
Confidence 9999999887 5799999975211 121 23344555555543322 233589999999999999
Q ss_pred HhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhhc
Q 000774 424 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 424 al~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
||+.+|+++||||||++||+.+++++++.+.+...+|+|+|++||++++++. ||||++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999998765554568999999999999975 899999999999999999988644
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=351.49 Aligned_cols=201 Identities=29% Similarity=0.452 Sum_probs=170.0
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 351 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i 351 (1293)
.|+++|++|+|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.... .++.|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 5899999999962 357999999999999999999999999999999999999999984321 13469
Q ss_pred EEEcCCc--cccCccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000774 352 AYVPQVS--WIFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 422 (1293)
Q Consensus 352 ~~v~Q~~--~l~~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialA 422 (1293)
||++|+| .++..||.||+.|+.. .+ .+++.++++.+++.+..+..| .+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 5678899999998632 22 234566777777766555444 48999999999999
Q ss_pred HHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHh
Q 000774 423 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 497 (1293)
Q Consensus 423 ral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 497 (1293)
|||+.+|++|||||||++||+.+..++++.+.+...+|+|+|++||+++++. .||||++|++|++++.|+++++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999998876655455899999999999985 59999999999999999987643
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=385.57 Aligned_cols=97 Identities=25% Similarity=0.439 Sum_probs=88.3
Q ss_pred Ccch-hhhcCCCCCChhHHHHHHHHHHhcc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhh
Q 000774 1034 GLDA-QVSEAGENFSVGQRQLLSLSRALLR---RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTII 1108 (1293)
Q Consensus 1034 gl~~-~~~~~~~~LSgGqkqrl~lArall~---~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~ 1108 (1293)
|++. .+++...+|||||+||++|||+|++ +|+++||||||++||+.+.+.+++.|+++. .+.|||+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5554 3577788999999999999999997 599999999999999999999999999875 4789999999999998
Q ss_pred ccCEEEEE------eCCeEeeecChhhh
Q 000774 1109 DCDRILLL------DSGRVLEYDTPEEL 1130 (1293)
Q Consensus 1109 ~~d~i~vl------~~G~i~~~g~~~el 1130 (1293)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89999999 79999999999886
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=352.04 Aligned_cols=207 Identities=29% Similarity=0.513 Sum_probs=170.0
Q ss_pred EEEEeeEEEcCCCC--CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------------
Q 000774 285 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 346 (1293)
Q Consensus 285 i~~~~~~~~y~~~~--~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------- 346 (1293)
++++|++|+|+... .+++|+||||+|++||+++|+|+||||||||+++|+|+++|++|....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996321 257999999999999999999999999999999999999999884311
Q ss_pred ecCcEEEEcCCc--cccCccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHH
Q 000774 347 IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 417 (1293)
Q Consensus 347 ~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkq 417 (1293)
.+..||||+|+| .+|+.||+|||.|+.. .+. +++.++++.+++...+ ......+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 123599999997 5788899999988631 222 2345566666664322 12344689999999
Q ss_pred HHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHH
Q 000774 418 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 495 (1293)
Q Consensus 418 RialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 495 (1293)
|++|||||+.+|++|||||||++||+.+..++.+.+..... .|.|+|+|||+++.+. .||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999986655434 3899999999999986 589999999999999999998
Q ss_pred HhhccH
Q 000774 496 LSNNGE 501 (1293)
Q Consensus 496 l~~~~~ 501 (1293)
+.+...
T Consensus 233 ~~~~~~ 238 (290)
T PRK13634 233 IFADPD 238 (290)
T ss_pred HhcCHH
Confidence 876543
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=342.17 Aligned_cols=191 Identities=25% Similarity=0.445 Sum_probs=159.0
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------ecC
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 349 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------~~~ 349 (1293)
++++|++++|++ ..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .++
T Consensus 2 l~~~~l~~~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPG-GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecC-CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 789999999963 2257999999999999999999999999999999999999999884211 134
Q ss_pred cEEEEcCCcccc-CccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000774 350 TVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 421 (1293)
Q Consensus 350 ~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRial 421 (1293)
.++|++|++.++ ..||+||+.++.. .. .+++.++++..++.+..+..+ .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 699999999887 4799999987521 11 234566677777765444333 5899999999999
Q ss_pred HHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeE
Q 000774 422 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 487 (1293)
Q Consensus 422 Aral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i 487 (1293)
||||+.+|+++||||||++||+.+.+++.+.+.+...+|+|+|+|||+++++.. ||++++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999998665544458999999999999875 899999999974
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=345.02 Aligned_cols=200 Identities=23% Similarity=0.376 Sum_probs=164.1
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------ecCcE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 351 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~~~i 351 (1293)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFG---GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEEC---CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 46899999996 357999999999999999999999999999999999999999984311 12359
Q ss_pred EEEcCCccccC-ccHHHHHccCCCC-------------CH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCCh
Q 000774 352 AYVPQVSWIFN-ATVRDNILFGSAF-------------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 413 (1293)
Q Consensus 352 ~~v~Q~~~l~~-~Tv~eni~~g~~~-------------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 413 (1293)
+|++|++.+|. .||+||+.++... .. +++.+.++..++.+ ..+....+|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-----------LADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-----------hhhCChhhCCH
Confidence 99999999875 5999999875321 01 12233333333322 23455678999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecC
Q 000774 414 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGT 492 (1293)
Q Consensus 414 GqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~ 492 (1293)
|||||++|||||+.+|+++||||||++||+.+.+++++.+.+...+|+|+|+|||+++++.. ||+|++|++|++++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999998766544468999999999999865 89999999999999999
Q ss_pred hHHHhh
Q 000774 493 FEDLSN 498 (1293)
Q Consensus 493 ~~~l~~ 498 (1293)
++++.+
T Consensus 227 ~~~~~~ 232 (236)
T cd03219 227 PDEVRN 232 (236)
T ss_pred HHHhcc
Confidence 888754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=339.66 Aligned_cols=193 Identities=28% Similarity=0.425 Sum_probs=159.8
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 354 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------~~~~i~~v 354 (1293)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..++|+
T Consensus 1 l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeC---CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 46899999996 357999999999999999999999999999999999999999984321 12469999
Q ss_pred cCCcccc-CccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhh
Q 000774 355 PQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 426 (1293)
Q Consensus 355 ~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~ 426 (1293)
||++.++ ..|++||+.++.. .+. +++.++++..++.+..+. ...+||||||||++|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNR-----------YPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHHHHHHHHh
Confidence 9999887 5799999987532 111 234555666666544433 33589999999999999999
Q ss_pred cCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEeCCeEEEec
Q 000774 427 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 491 (1293)
Q Consensus 427 ~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 491 (1293)
.+|+++||||||++||+.+.+++++.+.+... .|+|+|++||+++++.. ||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999986655444 48999999999998765 8999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=378.90 Aligned_cols=215 Identities=25% Similarity=0.405 Sum_probs=182.3
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHh-hhc
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR-KIL 986 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r-~~i 986 (1293)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++...+ +.+
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSGV--EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 49999999999753 699999999999999999999999999999999999999999999999999877766654 469
Q ss_pred eEEccccccccc-cHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000774 987 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1065 (1293)
Q Consensus 987 ~~v~Q~~~lf~~-ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 1065 (1293)
||+||++.+|.. |+++|+.+...... +.. ..+.+.++.+ |++........+||||||||++|||||+.+|+
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~ 160 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQ-ASM-----QKMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRDSR 160 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccch-HHH-----HHHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 999999988875 99999975422111 111 1123334432 44444556677899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1066 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1066 iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
+|||||||++||+.+.+.+.+.|+++. +++|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 161 ILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999864 47899999999999876 99999999999999999998864
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=339.34 Aligned_cols=197 Identities=24% Similarity=0.382 Sum_probs=160.7
Q ss_pred EEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCCh----HHHhhhc
Q 000774 911 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDLRKIL 986 (1293)
Q Consensus 911 ~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~r~~i 986 (1293)
++||++.|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.+
T Consensus 1 i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGDK--IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECCE--EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 46899999753 69999999999999999999999999999999999999999999999999765432 2356789
Q ss_pred eEEcccccccc-ccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 987 GIIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 987 ~~v~Q~~~lf~-~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
+|++|++.+|. .|+++|+.+.. .....+.. ..+.+.++.+ |++...+....+||||||||++|||||+.
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKR-----EKKKEALEKV--GLNLKLKQKIYELSGGEQQRVALARAILK 151 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CchhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999987 59999986421 11111111 1122333332 34444555667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecCcchhhccCEEEEE
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIIDCDRILLL 1116 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~~d~i~vl 1116 (1293)
+|++|||||||++||+.+.+.+.+.|++..+ +.|+|++||+++.+..||+|++|
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999998754 78999999999987779999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=346.37 Aligned_cols=217 Identities=19% Similarity=0.298 Sum_probs=175.3
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcC--CCCCcceEEECCeecCCCChHHHhh-
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDLRK- 984 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~r~- 984 (1293)
.++++|+++.|++. ++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++...++...++
T Consensus 7 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNEN--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCCE--EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 38999999999743 699999999999999999999999999999999998 6899999999999998877665554
Q ss_pred hceEEccccccccc-cHhhhcCCCCC----C---CHHHHHHHHHHhhHHHHHHHccCCcc-hhhhcCCC-CCChhHHHHH
Q 000774 985 ILGIIPQSPVLFSG-TVRFNLDPFSE----H---SDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGE-NFSVGQRQLL 1054 (1293)
Q Consensus 985 ~i~~v~Q~~~lf~~-ti~~nl~~~~~----~---~~~~~~~~l~~~~l~~~i~~lp~gl~-~~~~~~~~-~LSgGqkqrl 1054 (1293)
.++|+||++.+|.+ |+.+|+..... . .+.+..+.. ..+.+.++.+ |+. +..+.... .||||||||+
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qrv 160 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKLV--GMDPSFLSRNVNEGFSGGEKKRN 160 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHHc--CCchhhhccccccCCCHHHHHHH
Confidence 48999999998876 88888753210 0 000000000 1122333332 343 23444444 5999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc--cCEEEEEeCCeEeeecChhhh
Q 000774 1055 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEEL 1130 (1293)
Q Consensus 1055 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~--~d~i~vl~~G~i~~~g~~~el 1130 (1293)
+|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|||++||+++.+.. ||++++|++|++++.|+++++
T Consensus 161 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 161 EILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 99999999999999999999999999999999999875 47999999999999875 899999999999999998843
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=345.79 Aligned_cols=194 Identities=27% Similarity=0.393 Sum_probs=159.1
Q ss_pred CceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEEc-ccccccc-ccHh
Q 000774 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP-QSPVLFS-GTVR 1001 (1293)
Q Consensus 924 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~lf~-~ti~ 1001 (1293)
++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ....+++++|+| |++.+|. .|++
T Consensus 35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcHH
Confidence 699999999999999999999999999999999999999999999999987542 345677899998 5666764 5999
Q ss_pred hhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 000774 1002 FNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1078 (1293)
Q Consensus 1002 ~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~ 1078 (1293)
+|+.+.. ....++..+. +.+.++.+ |++.........||||||||++|||||+.+|++|||||||++||+
T Consensus 114 e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 186 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKR-----LDELSELL--DLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 9985321 1222222211 22333332 444445556678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeec
Q 000774 1079 RTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1125 (1293)
Q Consensus 1079 ~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1125 (1293)
.+.+.+.+.|+++.+ ++|+|++||+++++.. ||++++|++|++++.|
T Consensus 187 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 187 VAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999998753 6899999999999876 9999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=326.94 Aligned_cols=213 Identities=23% Similarity=0.478 Sum_probs=186.3
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
+++++|+++|++. .+++|+||.+++|++.|++|||||||||++++|+|+++|++|+|.++|.+++. ..+++|||
T Consensus 3 L~ie~vtK~Fg~k--~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIGy 76 (300)
T COG4152 3 LEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIGY 76 (300)
T ss_pred eEEecchhccCce--eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhccc
Confidence 7999999999865 69999999999999999999999999999999999999999999999998754 46789999
Q ss_pred Eccccccccc-cHhhhcCCCCC---CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 989 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~~---~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
+|.+.-|+.. ||.|.|.+++. ....++. ..+..|++++. +-....+....||-|++|++.+--+++++|
T Consensus 77 LPEERGLy~k~tv~dql~yla~LkGm~~~e~~-----~~~~~wLer~~--i~~~~~~kIk~LSKGnqQKIQfisaviHeP 149 (300)
T COG4152 77 LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ-----KKLQAWLERLE--IVGKKTKKIKELSKGNQQKIQFISAVIHEP 149 (300)
T ss_pred ChhhhccCccCcHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHhcc--ccccccchHHHhhhhhhHHHHHHHHHhcCC
Confidence 9999999965 99999876643 2333333 23556777753 333344566789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcC
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1134 (1293)
+++|||||+|||||.+.+.+.+.+.++. +|.|||+.||+|+-++. ||+++.|++|+.|-+|+.+++.+..
T Consensus 150 eLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 150 ELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred CEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 9999999999999999999999999876 58999999999999988 9999999999999999999998643
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=341.56 Aligned_cols=198 Identities=27% Similarity=0.410 Sum_probs=164.1
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCCcee-------------
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-----PPVSDASAV------------- 346 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~-----~~~~g~~~~------------- 346 (1293)
|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|....
T Consensus 1 i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 47899999996 357999999999999999999999999999999999999 898884211
Q ss_pred -ecCcEEEEcCCccccCccHHHHHccCCC---C-C----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHH
Q 000774 347 -IRGTVAYVPQVSWIFNATVRDNILFGSA---F-E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 417 (1293)
Q Consensus 347 -~~~~i~~v~Q~~~l~~~Tv~eni~~g~~---~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkq 417 (1293)
.++.++|++|++.+|..||+||+.++.. . . .++..++++..++.+..+..++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 1346999999998888899999987531 1 1 2344556666666554433211 4689999999
Q ss_pred HHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHH
Q 000774 418 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 495 (1293)
Q Consensus 418 RialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 495 (1293)
|++|||||+.+|+++||||||++||+.+.+++++.+.+...+ +|+|++||+++++. .||++++|++|++++.|++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999866554444 89999999999876 589999999999999988765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=351.05 Aligned_cols=208 Identities=24% Similarity=0.431 Sum_probs=169.0
Q ss_pred cEEEEeeEEEcCCCC--CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------
Q 000774 284 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 346 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~--~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~--------------- 346 (1293)
.++++|++|+|+.+. ++++|+||||+|++||+++|+|+||||||||+++|+|+++|++|....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 488999999996322 247999999999999999999999999999999999999999984211
Q ss_pred -ecCcEEEEcCCc--cccCccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHH
Q 000774 347 -IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 416 (1293)
Q Consensus 347 -~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqk 416 (1293)
.+..||||+|+| .+|..||.|||.++.. .+. +++.++++.+++... ..+....+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHH
Confidence 234699999997 5788899999998631 222 223344445554311 12345578999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChH
Q 000774 417 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 494 (1293)
Q Consensus 417 qRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 494 (1293)
||++|||||+.+|+++||||||++||+.+.+++.+.+..... .|+|+|+|||+++++. .||||++|++|++++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999886655433 4899999999999885 58999999999999999999
Q ss_pred HHhhccH
Q 000774 495 DLSNNGE 501 (1293)
Q Consensus 495 ~l~~~~~ 501 (1293)
++.+...
T Consensus 232 ~~~~~~~ 238 (286)
T PRK13646 232 ELFKDKK 238 (286)
T ss_pred HHHhCHH
Confidence 8876543
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=359.27 Aligned_cols=202 Identities=31% Similarity=0.447 Sum_probs=170.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 353 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------~~~~i~~ 353 (1293)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .++.|+|
T Consensus 2 ~L~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFG---RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 488999999996 357999999999999999999999999999999999999999984321 1246999
Q ss_pred EcCCcccc-CccHHHHHccCCC-------CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000774 354 VPQVSWIF-NATVRDNILFGSA-------FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 421 (1293)
Q Consensus 354 v~Q~~~l~-~~Tv~eni~~g~~-------~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRial 421 (1293)
|+|++.+| ..||+|||.|+.. .+ .++..+.++..++.+..+.. ..+||||||||++|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----------PAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHHH
Confidence 99999998 5799999998732 12 13455566666665544433 35899999999999
Q ss_pred HHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhhc
Q 000774 422 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 422 Aral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
||||+.+|++|||||||++||+.+++.+.+.+.+...+ |.|+|+|||+++++.. ||+|++|++|++++.|+++++..+
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999998866554444 7899999999998764 899999999999999999998765
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=335.96 Aligned_cols=190 Identities=30% Similarity=0.478 Sum_probs=159.8
Q ss_pred EEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------ecCcEEEEcC
Q 000774 286 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------IRGTVAYVPQ 356 (1293)
Q Consensus 286 ~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~---------~~~~i~~v~Q 356 (1293)
+++|++++|++ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .++.|+|++|
T Consensus 1 ~~~~l~~~~~~--~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q 78 (205)
T cd03226 1 RIENISFSYKK--GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQ 78 (205)
T ss_pred CcccEEEEeCC--cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEec
Confidence 36899999963 167999999999999999999999999999999999999999984321 1346999999
Q ss_pred Cc--cccCccHHHHHccCCC---CCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCE
Q 000774 357 VS--WIFNATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 431 (1293)
Q Consensus 357 ~~--~l~~~Tv~eni~~g~~---~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~i 431 (1293)
++ .++..|++||+.++.. ...++..++++..++.+..+..+ .+||||||||++|||||+.+|++
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCCCE
Confidence 97 3568899999987632 12345677788888766544433 48999999999999999999999
Q ss_pred EEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEE
Q 000774 432 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK 488 (1293)
Q Consensus 432 llLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~ 488 (1293)
+||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999988665544568999999999999875 8999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=333.40 Aligned_cols=181 Identities=25% Similarity=0.389 Sum_probs=158.9
Q ss_pred cEEEEEEEEEecCC--CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCC--CCCcceEEECCeecCCCChHHHh
Q 000774 908 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDLR 983 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p~~G~I~i~g~~i~~~~~~~~r 983 (1293)
.|+++|+++.|++. .+++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 48999999999641 136999999999999999999999999999999999986 489999999999875 4567
Q ss_pred hhceEEccccccccc-cHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 984 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 984 ~~i~~v~Q~~~lf~~-ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
++++|+||++.+|.. |+++|+.+. .. ++ +||||||||++||||++.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~---------~~-----~~-------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS---------AL-----LR-------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH---------HH-----Hh-------------------cCCHHHhHHHHHHHHHhc
Confidence 889999999988875 999998631 00 00 699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcch-h-hccCEEEEEeC-CeEeeec
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILLLDS-GRVLEYD 1125 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~-~-~~~d~i~vl~~-G~i~~~g 1125 (1293)
+|++|||||||++||+++.+.+++.|+++. .++|+|++||+++. + ..||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999865 37899999999984 4 45999999998 9998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=360.37 Aligned_cols=203 Identities=27% Similarity=0.413 Sum_probs=173.0
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCC--CCcee----------ecCc
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--DASAV----------IRGT 350 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~--g~~~~----------~~~~ 350 (1293)
..|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |.... .++.
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYG---ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEEC---CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 4589999999996 3579999999999999999999999999999999999999999 84321 1346
Q ss_pred EEEEcCCcccc-CccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000774 351 VAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 422 (1293)
Q Consensus 351 i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialA 422 (1293)
||||+|++.+| ..||+|||.|+.. .+ .+++.++++..++.+..+..| .+|||||||||+||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHHHH
Confidence 99999999998 5699999998632 12 134566677777766655544 58999999999999
Q ss_pred HHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC--CcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhc
Q 000774 423 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 423 ral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~--~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
|||+.+|++|||||||++||+..++++.+.+.+...+ |.|+|+|||+++++. .||+|++|++|+++..|+++++.++
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999877654444 789999999999875 5899999999999999999998765
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=323.22 Aligned_cols=163 Identities=33% Similarity=0.432 Sum_probs=148.7
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4689999999643 36999999999999999999999999999999999999999999999873 57999
Q ss_pred EccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000774 989 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 1068 (1293)
Q Consensus 989 v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLl 1068 (1293)
+||++.+++.|+++|+.+. ....||||||||++||||++++|++||
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998888999998641 235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCcchhhccCEEEEEeCC
Q 000774 1069 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 1119 (1293)
Q Consensus 1069 LDEpTs~lD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G 1119 (1293)
|||||++||+++.+.+.+.|++. ++|+|++||+++....||++++|++|
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 99999999999999999999985 68999999999877679999999865
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=361.99 Aligned_cols=202 Identities=29% Similarity=0.396 Sum_probs=170.3
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 353 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------~~~~i~~ 353 (1293)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..|||
T Consensus 3 ~l~i~~l~~~~~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 489999999996 357999999999999999999999999999999999999999984321 1245999
Q ss_pred EcCCcccc-CccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 000774 354 VPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 425 (1293)
Q Consensus 354 v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral 425 (1293)
|+|++.+| ..||+|||.|+.. .+ .+++.++++..++.+..+.. ..+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~-----------~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCC-----------hhhCCHHHHHHHHHHHHH
Confidence 99999988 5699999998632 12 13455667777776544433 358999999999999999
Q ss_pred hcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhc
Q 000774 426 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 426 ~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
+.+|++|||||||++||+.+++.+.+.+.+... .|.|+|+|||+++++. .||+|++|++|++++.|+++++...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999886655444 3899999999999876 5899999999999999999988654
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=347.44 Aligned_cols=207 Identities=31% Similarity=0.464 Sum_probs=174.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 351 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i 351 (1293)
.++++|++++|+. ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..|
T Consensus 5 ~l~~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 5899999999963 2457999999999999999999999999999999999999999984321 13469
Q ss_pred EEEcCCc--cccCccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000774 352 AYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 422 (1293)
Q Consensus 352 ~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialA 422 (1293)
+|++|++ .+++.||.|||.++.. .+. +++.++++..++.+.++..+ ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 3567899999987521 122 34566777777776655544 48999999999999
Q ss_pred HHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHhhccH
Q 000774 423 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 501 (1293)
Q Consensus 423 ral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 501 (1293)
|||+.+|++|||||||++||+.+.+++++.+.+...+ |+|+|++||+++.+..||+|++|++|++++.|+.+++.....
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGH 232 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCHH
Confidence 9999999999999999999999999999866554444 899999999999998899999999999999999998876544
Q ss_pred H
Q 000774 502 L 502 (1293)
Q Consensus 502 ~ 502 (1293)
.
T Consensus 233 ~ 233 (279)
T PRK13635 233 M 233 (279)
T ss_pred H
Confidence 3
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=320.57 Aligned_cols=159 Identities=30% Similarity=0.538 Sum_probs=147.7
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChH-HHhhhce
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKILG 987 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~-~~r~~i~ 987 (1293)
|+++|++++|++. ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ..+++++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 4789999999753 699999999999999999999999999999999999999999999999999877654 4567899
Q ss_pred EEccccccccccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000774 988 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1067 (1293)
Q Consensus 988 ~v~Q~~~lf~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 1067 (1293)
|+|| ||||||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEee
Q 000774 1068 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1123 (1293)
Q Consensus 1068 lLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 1123 (1293)
||||||++||+++.+.+.+.|+++. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999875 47899999999998876 99999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=340.09 Aligned_cols=203 Identities=25% Similarity=0.398 Sum_probs=169.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 351 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i 351 (1293)
.++++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..+
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSF---GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 489999999996 357999999999999999999999999999999999999999984321 13469
Q ss_pred EEEcCCccccCccHHHHHccCCCC---CHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcC
Q 000774 352 AYVPQVSWIFNATVRDNILFGSAF---EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 428 (1293)
Q Consensus 352 ~~v~Q~~~l~~~Tv~eni~~g~~~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~ 428 (1293)
+|++|++.+|..|++||+.++... ..++..+.++..++.... ......+||||||||++|||||+.+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999988999999876321 123455566666664211 1234568999999999999999999
Q ss_pred CCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhhc
Q 000774 429 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 429 ~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
|+++||||||++||+.+.+++.+.+..... .|+|+|++||+++++.. ||+|++|++|++++.|+++++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999999999999999999886655444 38999999999999875 899999999999999999988754
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=343.27 Aligned_cols=209 Identities=23% Similarity=0.379 Sum_probs=174.4
Q ss_pred EEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEE
Q 000774 910 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 989 (1293)
Q Consensus 910 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 989 (1293)
+++||++. .+|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.++|.++...++..+++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 46677774 27999999999999999999999999999999999985 599999999999888888888889999
Q ss_pred ccccccc-cccHhhhcCCCCCC--CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc----
Q 000774 990 PQSPVLF-SGTVRFNLDPFSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR---- 1062 (1293)
Q Consensus 990 ~Q~~~lf-~~ti~~nl~~~~~~--~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~---- 1062 (1293)
||++.++ ..|+++|+.+.... ...+. ...+.+.++.+ |++.........||||||||++|||||+.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAV-----ASALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHH-----HHHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 9998654 56999999754221 11111 11233444443 45555566778899999999999999997
Q ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1063 ---RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1063 ---~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 148 ~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999999875 47899999999998766 99999999999999999988864
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=339.12 Aligned_cols=198 Identities=24% Similarity=0.383 Sum_probs=164.9
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-----------ecCcEEE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 353 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-----------~~~~i~~ 353 (1293)
|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .+..++|
T Consensus 1 i~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEEC---CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 47899999996 357999999999999999999999999999999999999999984321 1246999
Q ss_pred EcCCccccC-ccHHHHHccCC---CCC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 000774 354 VPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 425 (1293)
Q Consensus 354 v~Q~~~l~~-~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral 425 (1293)
++|++.++. .|++||+.++. ..+ .++..+.++..++.+..+.. ..+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999998874 69999997642 111 23455667777766544432 358999999999999999
Q ss_pred hcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHH
Q 000774 426 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 496 (1293)
Q Consensus 426 ~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 496 (1293)
+.+|+++||||||++||+.+.+.+.+.+.+...+ |+|+|++||+++++.. ||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999998876655444 7899999999999875 899999999999999887764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=345.08 Aligned_cols=218 Identities=17% Similarity=0.293 Sum_probs=169.0
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCC--CCCcceEEECCeecCCCChHHHh-hh
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDLR-KI 985 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p~~G~I~i~g~~i~~~~~~~~r-~~ 985 (1293)
|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|.++...++...+ +.
T Consensus 2 i~~~nl~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVEDK--AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 7899999999753 6999999999999999999999999999999999994 69999999999999877766654 56
Q ss_pred ceEEccccccccc-cHhhhcCCC-CC---CCHHHHHHHHH-HhhHHHHHHHccCCcc-hhhhcCC-CCCChhHHHHHHHH
Q 000774 986 LGIIPQSPVLFSG-TVRFNLDPF-SE---HSDADLWEALE-RAHLKDAIRRNSLGLD-AQVSEAG-ENFSVGQRQLLSLS 1057 (1293)
Q Consensus 986 i~~v~Q~~~lf~~-ti~~nl~~~-~~---~~~~~~~~~l~-~~~l~~~i~~lp~gl~-~~~~~~~-~~LSgGqkqrl~lA 1057 (1293)
++|+||++.++.. |..+++... .. ....+..+..+ ...+.+.++.+ ++. ....... ..||||||||++||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL--KMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc--CCChhhcccCCCCCCCHHHHHHHHHH
Confidence 9999999987754 544443211 00 00000000000 01122333332 221 1122333 36999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecCcchhhc--cCEEEEEeCCeEeeecChhhh
Q 000774 1058 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEEL 1130 (1293)
Q Consensus 1058 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~--~d~i~vl~~G~i~~~g~~~el 1130 (1293)
||++++|+||||||||++||+++.+.+.+.|+++.+ ++|||++||+++.+.. ||+|++|++|++++.|+++..
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999988754 6899999999999876 899999999999999998755
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=360.78 Aligned_cols=203 Identities=30% Similarity=0.463 Sum_probs=173.0
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 351 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i 351 (1293)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .++.|
T Consensus 3 ~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 589999999996 367999999999999999999999999999999999999999984321 23469
Q ss_pred EEEcCCccc-cCccHHHHHccCCC-----C------CHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000774 352 AYVPQVSWI-FNATVRDNILFGSA-----F------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 419 (1293)
Q Consensus 352 ~~v~Q~~~l-~~~Tv~eni~~g~~-----~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRi 419 (1293)
|||+|++.+ ++.|++||+.++.. . +.+++.++++..++.+..+. ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 68999999988641 1 12345667777777655433 3468999999999
Q ss_pred HHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhh
Q 000774 420 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 498 (1293)
Q Consensus 420 alAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 498 (1293)
+|||||+++|++|||||||++||+.+...+.+.+.+...+|+|+|++||+++.+. .|||+++|++|++++.|+++++++
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 9999999999999999999999999999998866555446899999999999985 589999999999999999999876
Q ss_pred cc
Q 000774 499 NG 500 (1293)
Q Consensus 499 ~~ 500 (1293)
..
T Consensus 229 ~~ 230 (402)
T PRK09536 229 AD 230 (402)
T ss_pred cH
Confidence 53
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=335.52 Aligned_cols=199 Identities=48% Similarity=0.801 Sum_probs=173.7
Q ss_pred EEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------------ecC
Q 000774 286 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------IRG 349 (1293)
Q Consensus 286 ~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------------~~~ 349 (1293)
.+.|++|+|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+.
T Consensus 2 ~~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGS--GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 56889999974 367999999999999999999999999999999999999999884211 124
Q ss_pred cEEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCC
Q 000774 350 TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 429 (1293)
Q Consensus 350 ~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~ 429 (1293)
.++|++|++.+++.|++||+.++...+.++..++++.+++.+.++.+|.++++.++....+||||||||++|||||+.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 69999999999999999999987555555667788888888888888999999888899999999999999999999999
Q ss_pred CEEEEeCcccCcCHHHHHHHHHH-HHhh-hcCCcEEEEEecCcchhhhCCeEEEEeCCe
Q 000774 430 DVFIFDDPLSALDAHVGRQVFDR-CIRG-ELSGKTRVLVTNQLHFLSQVDRIILVHEGM 486 (1293)
Q Consensus 430 ~illLDEpts~LD~~~~~~i~~~-l~~~-~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~ 486 (1293)
+++||||||++||+.+.+.+.+. +++. ...|+|+|++||+++.+..||++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988872 4443 334799999999999998899999999874
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=340.52 Aligned_cols=199 Identities=23% Similarity=0.376 Sum_probs=163.4
Q ss_pred CcEEEEeeEEEcCCCC-CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------
Q 000774 283 PAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 346 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~-~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~--------------- 346 (1293)
+.++++|++|+|+.+. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 3589999999996322 257999999999999999999999999999999999999999884321
Q ss_pred e-cCcEEEEcCCccccC-ccHHHHHccCC---CCC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHH
Q 000774 347 I-RGTVAYVPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 417 (1293)
Q Consensus 347 ~-~~~i~~v~Q~~~l~~-~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkq 417 (1293)
. +..|+|++|++.+|. .|++||+.++. ..+ .+++.++++..++.+.. .....+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~q 152 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA-----------NHRPSELSGGERQ 152 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHH
Confidence 0 146999999998875 59999998631 112 13345566666654433 2344689999999
Q ss_pred HHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEeCCeEEEecC
Q 000774 418 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 492 (1293)
Q Consensus 418 RialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~ 492 (1293)
|++|||||+.+|++|||||||++||+.+.+++.+.+.+... +|+|+|+|||+++++..+|++++|++|++++.|+
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999886655433 5899999999999999889999999999998765
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=379.25 Aligned_cols=215 Identities=22% Similarity=0.367 Sum_probs=181.5
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC--CcceEEECCeecCCCChHH-Hhh
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMD-LRK 984 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p--~~G~I~i~g~~i~~~~~~~-~r~ 984 (1293)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+
T Consensus 5 ~l~~~nl~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGGV--KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCCe--EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 38999999999743 699999999999999999999999999999999999996 8999999999998766554 456
Q ss_pred hceEEccccccccc-cHhhhcCCCCC------CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 000774 985 ILGIIPQSPVLFSG-TVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1057 (1293)
Q Consensus 985 ~i~~v~Q~~~lf~~-ti~~nl~~~~~------~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 1057 (1293)
.+||+||++.+|.. |+++|+.+... ...++.. ..+.++++.+ |++...+....+||||||||++||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY-----LRAQKLLAQL--KLDINPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHHHHH
Confidence 79999999988865 99999975321 1111111 1233445543 454445666778999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1058 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1058 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
|||+.+|+||||||||++||+.+...+.+.|+++. +++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 99999999999999999999999999999998864 47899999999999876 9999999999999999988874
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=341.73 Aligned_cols=198 Identities=28% Similarity=0.376 Sum_probs=166.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------ecCcEEEEc
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVP 355 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------~~~~i~~v~ 355 (1293)
+.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..++|++
T Consensus 11 ~~l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYG---ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 4699999999996 357999999999999999999999999999999999999999985321 234699999
Q ss_pred CCccccC-ccHHHHHccCCCC-CHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEE
Q 000774 356 QVSWIFN-ATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 433 (1293)
Q Consensus 356 Q~~~l~~-~Tv~eni~~g~~~-~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~ill 433 (1293)
|++.++. .||+||+.++... ..++..+.++..++.+..+ ....+||||||||++|||||+.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998875 7999999876321 2345566677777654433 3446899999999999999999999999
Q ss_pred EeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChH
Q 000774 434 FDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 494 (1293)
Q Consensus 434 LDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 494 (1293)
|||||++||+.+.+.+.+.+.+... .++|+|+|||+++++. .||+|++|++|++++.|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999886655433 4799999999999986 58999999999999988754
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=343.18 Aligned_cols=200 Identities=29% Similarity=0.433 Sum_probs=164.9
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------ecC
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 349 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------~~~ 349 (1293)
|+++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .+.
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 367999999999999999999999999999999999999999884321 134
Q ss_pred cEEEEcCCcccc-CccHHHHHccCCCC------------C---HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCCh
Q 000774 350 TVAYVPQVSWIF-NATVRDNILFGSAF------------E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 413 (1293)
Q Consensus 350 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~------------~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 413 (1293)
.++|++|++.+| ..||+||+.++... . .+++.++++..++.+.. .....+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 599999999887 57999999875310 1 12344455555554333 334568999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEeCCeEEEec
Q 000774 414 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 491 (1293)
Q Consensus 414 GqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g 491 (1293)
|||||++|||||+.+|+++||||||++||+.+.+++.+.+.+... .|+|+|+|||+++++. .||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999886655433 3799999999999985 58999999999999999
Q ss_pred ChHHHh
Q 000774 492 TFEDLS 497 (1293)
Q Consensus 492 ~~~~l~ 497 (1293)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 988863
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=331.65 Aligned_cols=194 Identities=24% Similarity=0.334 Sum_probs=164.5
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ..+|++++|
T Consensus 1 l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDGR--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCCc--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 4689999999753 6999999999999999999999999999999999999999999999999986543 467889999
Q ss_pred Ecccccccc-ccHhhhcCCCCC-CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000774 989 IPQSPVLFS-GTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1066 (1293)
Q Consensus 989 v~Q~~~lf~-~ti~~nl~~~~~-~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 1066 (1293)
+||++.++. .|+++|+.++.. ..++++.++++..++.++ ......+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-----------EDRPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998874 699999975432 234455556666555432 2334567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEE
Q 000774 1067 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLL 1116 (1293)
Q Consensus 1067 LlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl 1116 (1293)
|||||||++||+.+.+.+.+.|++.. +++|+|++||+...+.. ||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998864 47999999999887655 9999877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=377.40 Aligned_cols=215 Identities=24% Similarity=0.363 Sum_probs=180.2
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHH-hhhc
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 986 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 986 (1293)
.|+++|++++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 4 ~i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPGV--KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCCe--EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 38999999999753 69999999999999999999999999999999999999999999999999876555443 5679
Q ss_pred eEEccccccccc-cHhhhcCCCCC-------CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000774 987 GIIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1058 (1293)
Q Consensus 987 ~~v~Q~~~lf~~-ti~~nl~~~~~-------~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 1058 (1293)
+|+||++.+|.. |+++|+.+... ....+.. ..+.+.++.+ |+.........+||||||||++|||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMY-----AEADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHH
Confidence 999999988865 99999975321 1111111 1233444443 4444455666789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1059 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1059 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
||+.+|++|||||||++||+.+.+.+++.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999999998864 46899999999999876 9999999999999999988764
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=358.50 Aligned_cols=190 Identities=24% Similarity=0.373 Sum_probs=162.0
Q ss_pred CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------e----cCcEEEEcCCccccC
Q 000774 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------I----RGTVAYVPQVSWIFN 362 (1293)
Q Consensus 299 ~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~----~~~i~~v~Q~~~l~~ 362 (1293)
++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... + +..|+||+|++++|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 467999999999999999999999999999999999999999984321 1 457999999999985
Q ss_pred -ccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEE
Q 000774 363 -ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 434 (1293)
Q Consensus 363 -~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~illL 434 (1293)
.||+|||.++.. .+ .++..++++.+++....+.. ..+|||||||||+|||||+.+|+++||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~-----------p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY-----------PDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 699999998632 12 23455667777776554444 458999999999999999999999999
Q ss_pred eCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhc
Q 000774 435 DDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 435 DEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
||||++|||.+++++.+.+.+... .++|+|+|||+++++. .||+|++|++|++++.|+++++..+
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999999987766543 4899999999999865 5899999999999999999998875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=338.92 Aligned_cols=192 Identities=28% Similarity=0.426 Sum_probs=157.4
Q ss_pred EEEEeeEEEcCCCC-CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------------e
Q 000774 285 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 347 (1293)
Q Consensus 285 i~~~~~~~~y~~~~-~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------------~ 347 (1293)
|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996311 157999999999999999999999999999999999999999884321 1
Q ss_pred cCcEEEEcCCccccC-ccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000774 348 RGTVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 419 (1293)
Q Consensus 348 ~~~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRi 419 (1293)
+..++|++|++.+|. .||+||+.++.. .+ .+++.++++..++.+..+ ....+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-----------HYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------cChhhcCHHHHHHH
Confidence 246999999998885 599999987532 11 134455566666544333 34468999999999
Q ss_pred HHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEeCCeE
Q 000774 420 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMV 487 (1293)
Q Consensus 420 alAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i 487 (1293)
+|||||+.+|++|||||||++||+.+.+++.+.+.+... .|+|+|+|||+++++..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999886655444 48999999999999888899999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=340.55 Aligned_cols=203 Identities=28% Similarity=0.440 Sum_probs=166.8
Q ss_pred EEEEeeEEEcCCCC-CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------ec
Q 000774 285 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 348 (1293)
Q Consensus 285 i~~~~~~~~y~~~~-~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------~~ 348 (1293)
|+++|++++|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996321 127999999999999999999999999999999999999999884311 13
Q ss_pred CcEEEEcCCccccC-ccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000774 349 GTVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420 (1293)
Q Consensus 349 ~~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRia 420 (1293)
..|+|+||++.+|. .|++||+.++.. .+ .++..+.++..++.+..+. ...+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADA-----------YPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 46999999999885 799999986421 22 1234455566665544333 34689999999999
Q ss_pred HHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhh
Q 000774 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 498 (1293)
Q Consensus 421 lAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 498 (1293)
|||||+.+|+++||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999998876654443 8999999999999865 89999999999999999887754
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=341.84 Aligned_cols=194 Identities=26% Similarity=0.403 Sum_probs=161.6
Q ss_pred eeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceEEcccccccc-ccHhhhc
Q 000774 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRFNL 1004 (1293)
Q Consensus 926 l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~nl 1004 (1293)
|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+||++.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876443 2489999999887 5999998
Q ss_pred CCC-----CCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 000774 1005 DPF-----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 1079 (1293)
Q Consensus 1005 ~~~-----~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~lD~~ 1079 (1293)
.+. ....+.+.. ..+.+.++.+ |++.........||||||||++|||||+.+|++|||||||++||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERR-----AIVEEHIALV--GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHhcccCCCHHHHH-----HHHHHHHHHc--CCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 642 112222111 1123344442 4555555667789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1080 TDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1080 t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|++.+++
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 9999999999864 36899999999999876 9999999999999999877664
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=339.69 Aligned_cols=201 Identities=25% Similarity=0.360 Sum_probs=163.2
Q ss_pred ceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC----CcceEEECCeecCCCChHHHhhhceEEccccc-cc-c-
Q 000774 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL----ERGRILIDGFDIAKFGLMDLRKILGIIPQSPV-LF-S- 997 (1293)
Q Consensus 925 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p----~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf-~- 997 (1293)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ...++.++|+||++. .| .
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999998653 223467999999995 34 3
Q ss_pred ccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcc---hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeC
Q 000774 998 GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD---AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1071 (1293)
Q Consensus 998 ~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~---~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDE 1071 (1293)
.|+.+|+.... .....+. ...+.+.++.+ +++ +.....+..||||||||++||||++++|+||||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQA-----RALILEALEAV--GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHH-----HHHHHHHHHHc--CCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 48888864211 0111110 01123333332 333 44566778899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhhcC
Q 000774 1072 ATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134 (1293)
Q Consensus 1072 pTs~lD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1134 (1293)
||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 217 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNP 217 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999998753 6899999999999976 9999999999999999999997543
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=379.00 Aligned_cols=216 Identities=22% Similarity=0.344 Sum_probs=181.9
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHH-hhhc
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 986 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 986 (1293)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++... ++.+
T Consensus 5 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGPV--HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 38999999999753 69999999999999999999999999999999999999999999999999987776543 4579
Q ss_pred eEEccccccccc-cHhhhcCCCCC----C------CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 000774 987 GIIPQSPVLFSG-TVRFNLDPFSE----H------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1055 (1293)
Q Consensus 987 ~~v~Q~~~lf~~-ti~~nl~~~~~----~------~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 1055 (1293)
+|+||++.+|.. |+++|+.+... . ...+.. ..+.+.++.+ |+....+....+||||||||++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMR-----VRAAMMLLRV--GLKVDLDEKVANLSISHKQMLE 155 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHHH
Confidence 999999988865 99999864211 0 111111 1233444443 4544456667789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1056 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 9999999999999999999999999999999999865 47899999999999976 99999999999999999988753
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=337.72 Aligned_cols=198 Identities=29% Similarity=0.415 Sum_probs=162.5
Q ss_pred EEEEeeEEEcCCCC-CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------ecCcEEEEcC
Q 000774 285 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVPQ 356 (1293)
Q Consensus 285 i~~~~~~~~y~~~~-~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------~~~~i~~v~Q 356 (1293)
|+++|++++|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999996311 157999999999999999999999999999999999999999984321 2346999999
Q ss_pred CccccC-ccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcC
Q 000774 357 VSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 428 (1293)
Q Consensus 357 ~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~ 428 (1293)
++.+|. .|++||+.++.. .. .+++.+.++..++.+..+.. ..+||||||||++|||||+.+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAY-----------PHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHHHHHHcC
Confidence 998875 799999986521 11 23455566666665544433 358999999999999999999
Q ss_pred CCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEe--CCeEEEecCh
Q 000774 429 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVH--EGMVKEEGTF 493 (1293)
Q Consensus 429 ~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~--~G~i~~~g~~ 493 (1293)
|+++||||||++||+.+.+.+++.+.+... .++|+|+|||+++++. .||++++|+ +|+++++++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999986655433 4899999999999876 589999999 7999987753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=341.72 Aligned_cols=200 Identities=28% Similarity=0.451 Sum_probs=164.4
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------ecC
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 349 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------~~~ 349 (1293)
++++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .+.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999963 257999999999999999999999999999999999999999884311 134
Q ss_pred cEEEEcCCcccc-CccHHHHHccCCC------------CC---HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCCh
Q 000774 350 TVAYVPQVSWIF-NATVRDNILFGSA------------FE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 413 (1293)
Q Consensus 350 ~i~~v~Q~~~l~-~~Tv~eni~~g~~------------~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 413 (1293)
.++|+||++.+| ..||+||+.++.. .. .+++.+.++..++.+. ....+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 599999999887 4799999986421 01 1233344555554332 2345579999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEeCCeEEEec
Q 000774 414 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 491 (1293)
Q Consensus 414 GqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g 491 (1293)
|||||++|||||+.+|++|||||||++||+.+.+.+++.+..... .|+|+|++||+++.+. .||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999886655443 4899999999999988 58999999999999999
Q ss_pred ChHHHh
Q 000774 492 TFEDLS 497 (1293)
Q Consensus 492 ~~~~l~ 497 (1293)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 988863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=346.40 Aligned_cols=202 Identities=32% Similarity=0.451 Sum_probs=169.0
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------ecCcE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 351 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~~~i 351 (1293)
++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999952 356999999999999999999999999999999999999999884311 13459
Q ss_pred EEEcCCcc--ccCccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000774 352 AYVPQVSW--IFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 422 (1293)
Q Consensus 352 ~~v~Q~~~--l~~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialA 422 (1293)
+|++|+|. +++.|+.|||.++.. .+ .+++.++++..++.+..+. ....||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHH
Confidence 99999985 467899999987632 12 1334455666666544333 3468999999999999
Q ss_pred HHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHhhc
Q 000774 423 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 423 ral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
|||+.+|+++||||||++||+.+.+.+++.+.+...+|.|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999998765544468999999999999988999999999999999999887654
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=336.58 Aligned_cols=205 Identities=26% Similarity=0.440 Sum_probs=173.8
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecC
Q 000774 282 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRG 349 (1293)
Q Consensus 282 ~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~ 349 (1293)
.+.++++|++++|+...++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+.
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 35699999999997432357999999999999999999999999999999999999999984321 134
Q ss_pred cEEEEcCCccccCccHHHHHccCCC-CCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcC
Q 000774 350 TVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 428 (1293)
Q Consensus 350 ~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~ 428 (1293)
.++|++|++.+|..||+||+.++.. ....++.+..+...+.+.++.++.|..+.++....+||||||||++|||||+.+
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 6999999999998999999987643 222333344455667788888887777778888999999999999999999999
Q ss_pred CCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeE
Q 000774 429 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 487 (1293)
Q Consensus 429 ~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i 487 (1293)
|+++||||||++||+.+.+++.+.+... .+++|+|++||+++++..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDW-PERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999998866543 346899999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=352.41 Aligned_cols=202 Identities=25% Similarity=0.398 Sum_probs=167.3
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-----------ecCcE
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTV 351 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-----------~~~~i 351 (1293)
..|+++|++++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|.... .+..|
T Consensus 3 ~~i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeC---CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 3589999999996 357999999999999999999999999999999999999999984321 13569
Q ss_pred EEEcCCcccc-CccHHHHHccC-C--CCCHH----HHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000774 352 AYVPQVSWIF-NATVRDNILFG-S--AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 423 (1293)
Q Consensus 352 ~~v~Q~~~l~-~~Tv~eni~~g-~--~~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAr 423 (1293)
||+||++.++ ..|++||+.+. . ..+.. +..+.++..++.+.. .....+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCchhhCCHHHHHHHHHHH
Confidence 9999999887 57999999742 1 12222 233445555544322 2334689999999999999
Q ss_pred HhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhh
Q 000774 424 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 498 (1293)
Q Consensus 424 al~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 498 (1293)
||+.+|+++||||||++||+.+.+++++.+.+...+|+|+|++||+++++.. ||+|++|++|+++..|+++++..
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999998766554568999999999999864 89999999999999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=333.02 Aligned_cols=193 Identities=23% Similarity=0.378 Sum_probs=163.1
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 354 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------~~~~i~~v 354 (1293)
|+++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.... .+..++|+
T Consensus 1 l~~~~l~~~~~---~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEEC---CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 47899999995 357999999999999999999999999999999999999999984321 13469999
Q ss_pred cCCcccc-CccHHHHHccCC---CCCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCC
Q 000774 355 PQVSWIF-NATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 430 (1293)
Q Consensus 355 ~Q~~~l~-~~Tv~eni~~g~---~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~ 430 (1293)
+|++.++ +.|++||+.++. ..+.++..++++..++.+..+. ...+||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999887 689999997652 1234566677777777654433 346899999999999999999999
Q ss_pred EEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEec
Q 000774 431 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 491 (1293)
Q Consensus 431 illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 491 (1293)
++||||||++||+.+.+++.+.+.+...+++|+|++||+++++.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999988665544468999999999999865 8999999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=347.18 Aligned_cols=205 Identities=25% Similarity=0.426 Sum_probs=171.3
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee--------------ecC
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRG 349 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~--------------~~~ 349 (1293)
.|+++|++|+|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.... +++
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 6999999999962 357999999999999999999999999999999999999999884211 234
Q ss_pred cEEEEcCCc--cccCccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000774 350 TVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420 (1293)
Q Consensus 350 ~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRia 420 (1293)
.|||++|++ .+++.|++||+.++.. ... +++.++++..++.+.. .....+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 699999998 4678999999987521 121 3345566777765433 2345799999999999
Q ss_pred HHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhh
Q 000774 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 498 (1293)
Q Consensus 421 lAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 498 (1293)
|||||+.+|++|||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+. .|||+++|++|++++.|+++++.+
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999998866554443 899999999999987 599999999999999999999876
Q ss_pred ccH
Q 000774 499 NGE 501 (1293)
Q Consensus 499 ~~~ 501 (1293)
...
T Consensus 232 ~~~ 234 (283)
T PRK13636 232 EKE 234 (283)
T ss_pred CHH
Confidence 543
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=355.32 Aligned_cols=203 Identities=25% Similarity=0.415 Sum_probs=168.4
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-----------ecCcE
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTV 351 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-----------~~~~i 351 (1293)
..|+++|++++|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|.... .+..|
T Consensus 40 ~~i~i~nl~k~y~---~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 40 VAIDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred eeEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 4699999999996 357999999999999999999999999999999999999999984321 23469
Q ss_pred EEEcCCcccc-CccHHHHHccC-C--CCCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000774 352 AYVPQVSWIF-NATVRDNILFG-S--AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 423 (1293)
Q Consensus 352 ~~v~Q~~~l~-~~Tv~eni~~g-~--~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAr 423 (1293)
||+||++.++ ..|+.||+.+. . ..+. ++..+.++.+++.+.. .....+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-----------~~~~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DARVSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------CCChhhCCHHHHHHHHHHH
Confidence 9999999886 78999999752 1 1121 2233444444443322 2334689999999999999
Q ss_pred HhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhhc
Q 000774 424 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 424 al~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
||+.+|+++||||||++|||.+++++++.+.+...+|+|+|++||+++.++. ||+|++|++|+++..|+++++.+.
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999998776655568999999999999975 899999999999999999998653
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=360.13 Aligned_cols=226 Identities=26% Similarity=0.451 Sum_probs=186.2
Q ss_pred cEEEEEEEEEecCCCC--CceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCC----cceEEECCeecCCCChHH
Q 000774 908 SIKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE----RGRILIDGFDIAKFGLMD 981 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~--~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~----~G~I~i~g~~i~~~~~~~ 981 (1293)
.++++|+++.|..... ++++||||+|.+||++||||.|||||||+.++|.|++++. +|+|.++|.|+-.++...
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999964332 4899999999999999999999999999999999999988 899999999998888766
Q ss_pred Hh----hhceEEccccc-cccc--cHhhhcC----CCCCC----CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCC
Q 000774 982 LR----KILGIIPQSPV-LFSG--TVRFNLD----PFSEH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 1046 (1293)
Q Consensus 982 ~r----~~i~~v~Q~~~-lf~~--ti~~nl~----~~~~~----~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~L 1046 (1293)
.| ++|+|+||+|. .++. ||.+.+. ..... ..++..+.++.+++.+ .-.. +..++.|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~-------~~~~--~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPD-------PERR--DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCC-------hhhh--ccCCccc
Confidence 54 35999999994 5553 6665543 11111 1222333344443322 1111 4467899
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEEEeCCeEee
Q 000774 1047 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1123 (1293)
Q Consensus 1047 SgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 1123 (1293)
|||||||+.||+||+.+|++||+||||++||+.+...|.+.|+++. .+.++|+||||+..+.. ||||+||.+|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999976 47999999999999988 99999999999999
Q ss_pred ecChhhhhhcCCChHHHHH
Q 000774 1124 YDTPEELLSNEGSSFSKMV 1142 (1293)
Q Consensus 1124 ~g~~~el~~~~~~~~~~l~ 1142 (1293)
.|+++++++++...|.+..
T Consensus 236 ~G~~~~i~~~p~hpYT~~L 254 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGL 254 (539)
T ss_pred ecCHHHHHhccCCcccHHH
Confidence 9999999988877787655
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=330.20 Aligned_cols=190 Identities=24% Similarity=0.412 Sum_probs=161.3
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 350 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~ 350 (1293)
..++++|++++|+. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.... .+..
T Consensus 5 ~~l~~~~l~~~~~~-~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAP-DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCC-CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 45999999999963 2357999999999999999999999999999999999999999984321 2356
Q ss_pred EEEEcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCC
Q 000774 351 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 430 (1293)
Q Consensus 351 i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~ 430 (1293)
|+|++|++.+|+.|++||+.+....+.+++.+.++ ++.....|||||+||++|||||+.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999899999998654443333333222 234567999999999999999999999
Q ss_pred EEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEecC
Q 000774 431 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 492 (1293)
Q Consensus 431 illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~ 492 (1293)
++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+..+|++++|++|++++.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREE-FTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999998866544 46899999999999988899999999999998775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=305.45 Aligned_cols=220 Identities=27% Similarity=0.427 Sum_probs=183.3
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCC----------C
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----------F 977 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~----------~ 977 (1293)
.++++|+.++|+.. .+|++||++.++|+.+.|+|.|||||||+++||.=+-.|+.|.|.++|..+.- .
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 48999999999865 69999999999999999999999999999999999999999999999987742 1
Q ss_pred C---hHHHhhhceEEccccccccc-cHhhhcCCCC----CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChh
Q 000774 978 G---LMDLRKILGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 1049 (1293)
Q Consensus 978 ~---~~~~r~~i~~v~Q~~~lf~~-ti~~nl~~~~----~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgG 1049 (1293)
+ ...+|.+.|+|+|+..|++. |+.||..-.+ ..+..+.. ++ +..++.+ .|+......-+..||||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~---e~--Ae~~L~k--VGi~ek~~~YP~~LSGG 156 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAI---ER--AEKYLAK--VGIAEKADAYPAHLSGG 156 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHH---HH--HHHHHHH--hCchhhhhcCccccCch
Confidence 2 33468889999999999976 9999984221 11222211 11 1223333 24555555556789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecCh
Q 000774 1050 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1127 (1293)
Q Consensus 1050 qkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1127 (1293)
|+||++|||||..+|+++++|||||+|||+-.-++.+.++++. .|+|+++|||.|.+..+ +.+|+.+.+|.|-|+|+|
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence 9999999999999999999999999999999999999999876 48999999999999988 899999999999999999
Q ss_pred hhhhhcCCC
Q 000774 1128 EELLSNEGS 1136 (1293)
Q Consensus 1128 ~el~~~~~~ 1136 (1293)
+++..++.+
T Consensus 237 ~qvf~nP~S 245 (256)
T COG4598 237 EQVFGNPQS 245 (256)
T ss_pred HHHhcCCCC
Confidence 999976543
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-37 Score=358.01 Aligned_cols=204 Identities=25% Similarity=0.402 Sum_probs=171.4
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------ecCcE
Q 000774 282 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTV 351 (1293)
Q Consensus 282 ~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------~~~~i 351 (1293)
...|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|.... .++.|
T Consensus 17 ~~~l~l~~v~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNLTKSFD---GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred CceEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 34699999999996 357999999999999999999999999999999999999999984321 13469
Q ss_pred EEEcCCcccc-CccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000774 352 AYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 423 (1293)
Q Consensus 352 ~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAr 423 (1293)
|||+|++.+| ..||.|||.|+.. .+. +++.+.++..++.+..+..| .+|||||||||+|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 9999999998 5699999998732 122 34455666666665444433 589999999999999
Q ss_pred HhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhc
Q 000774 424 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 424 al~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
||+.+|++|||||||++||+.+++++.+.+.+..+ .|.|+|+|||+++++. .||+|++|++|++++.|+++++..+
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999876655433 4899999999999865 5899999999999999999998765
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=334.72 Aligned_cols=190 Identities=31% Similarity=0.528 Sum_probs=157.0
Q ss_pred EEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------ecCcEEEEcCCc
Q 000774 286 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVPQVS 358 (1293)
Q Consensus 286 ~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------~~~~i~~v~Q~~ 358 (1293)
+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..++|++|++
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 77 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRR 77 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccc
Confidence 36899999962 57999999999999999999999999999999999999999984322 134699999998
Q ss_pred cc---cCccHHHHHccCCCC-----------CHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000774 359 WI---FNATVRDNILFGSAF-----------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 424 (1293)
Q Consensus 359 ~l---~~~Tv~eni~~g~~~-----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAra 424 (1293)
.+ ++.||+||+.++... ..+++.++++..++.+..+. ...+||||||||++||||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~a 146 (213)
T cd03235 78 SIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRVLLARA 146 (213)
T ss_pred ccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHHH
Confidence 76 568999999875321 12345566777777654443 335899999999999999
Q ss_pred hhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEe
Q 000774 425 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEE 490 (1293)
Q Consensus 425 l~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~ 490 (1293)
|+.+|+++||||||++||+.+.+++.+.+.+...+|+|+|+|||+++++.. ||+|++|++| +++.
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 999999999999999999999999998766544468999999999999865 8999999886 4544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=338.37 Aligned_cols=200 Identities=24% Similarity=0.393 Sum_probs=163.9
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------ecCcE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 351 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~~~i 351 (1293)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .+..+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYG---KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeC---CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 47899999996 357999999999999999999999999999999999999999984321 12359
Q ss_pred EEEcCCccccC-ccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000774 352 AYVPQVSWIFN-ATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 423 (1293)
Q Consensus 352 ~~v~Q~~~l~~-~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAr 423 (1293)
+|++|++.+|. .|++||+.++.. ... +++.+.++..++.+ .......+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-----------LRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHHHH
Confidence 99999998886 599999987531 111 12233444444432 234455789999999999999
Q ss_pred HhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhh
Q 000774 424 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 498 (1293)
Q Consensus 424 al~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 498 (1293)
||+.+|++|||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999988665544468999999999987764 89999999999999999988754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=346.08 Aligned_cols=205 Identities=24% Similarity=0.425 Sum_probs=168.0
Q ss_pred cEEEEeeEEEcCCCC--CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------
Q 000774 284 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 346 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~--~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~--------------- 346 (1293)
.|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|....
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999996321 257999999999999999999999999999999999999999984211
Q ss_pred -ecCcEEEEcCCc--cccCccHHHHHccCCC---CCH----HHHHHHHHHcCCh-hHHhcCCCCCcccccCCCCCCChHH
Q 000774 347 -IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQ-HDLDLLPGGDVTEIGERGVNISGGQ 415 (1293)
Q Consensus 347 -~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~-~~~~~l~~g~~t~ig~~g~~LSGGq 415 (1293)
.+..|+|++|+| .+|..|+.|||.++.. ... +++.+.++.+++. +.. .....+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-----------SKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-----------hCCcccCCHHH
Confidence 123599999998 4678899999987521 222 2344555666654 222 33456899999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChH
Q 000774 416 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 494 (1293)
Q Consensus 416 kqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 494 (1293)
|||++|||||+.+|++|||||||++||+.+.+++.+.+.....+|.|+|++||+++++. .||++++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998866554446899999999999986 58999999999999999999
Q ss_pred HHhhc
Q 000774 495 DLSNN 499 (1293)
Q Consensus 495 ~l~~~ 499 (1293)
++.+.
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 88654
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=330.76 Aligned_cols=194 Identities=25% Similarity=0.343 Sum_probs=163.3
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...+++++|
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDER--ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECCE--EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 7899999999753 6999999999999999999999999999999999999999999999999987643 456778999
Q ss_pred Ecccccccc-ccHhhhcCCCCC----CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000774 989 IPQSPVLFS-GTVRFNLDPFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1063 (1293)
Q Consensus 989 v~Q~~~lf~-~ti~~nl~~~~~----~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 1063 (1293)
++|++.++. .|++||+.+... ..++++.++++..++. ...+.....||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-----------GFEDVPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCH-----------HHhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 999998886 499999964321 1223444455554443 333445678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhcc-CEEEEE
Q 000774 1064 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDC-DRILLL 1116 (1293)
Q Consensus 1064 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~-d~i~vl 1116 (1293)
|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++++..| +|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999864 478999999999999774 677665
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=341.93 Aligned_cols=206 Identities=24% Similarity=0.370 Sum_probs=168.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----CCCcee-----------
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASAV----------- 346 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~-----~g~~~~----------- 346 (1293)
..++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|....
T Consensus 6 ~~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeC---CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 3699999999996 357999999999999999999999999999999999999874 663211
Q ss_pred ---ecCcEEEEcCCccccCccHHHHHccCCC----CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHH
Q 000774 347 ---IRGTVAYVPQVSWIFNATVRDNILFGSA----FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 415 (1293)
Q Consensus 347 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGq 415 (1293)
.+..|+|++|++.+|..||+|||.++.. .+ .+++.++++.+++.+.+. + .......+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~----~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---D----KLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---H----HHhCCcccCCHHH
Confidence 2346999999999988999999987632 11 123444555555532221 1 1234567999999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChH
Q 000774 416 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 494 (1293)
Q Consensus 416 kqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 494 (1293)
|||++|||||+.+|++|||||||++||+.+.+++++.+.+. .+++|+|++||+++++.. ||||++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998865554 457899999999999864 8999999999999999999
Q ss_pred HHhhc
Q 000774 495 DLSNN 499 (1293)
Q Consensus 495 ~l~~~ 499 (1293)
++.++
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 88654
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=334.19 Aligned_cols=193 Identities=31% Similarity=0.462 Sum_probs=159.4
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 354 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------~~~~i~~v 354 (1293)
|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 478999999963 57999999999999999999999999999999999999999884321 12359999
Q ss_pred cCCcccc-CccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhh
Q 000774 355 PQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 426 (1293)
Q Consensus 355 ~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~ 426 (1293)
+|++.++ ..|++||+.++.. ... +++.+.++..++.+..+ ....+||||||||++|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-----------RKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 9999887 5799999987521 122 23344556666554433 334689999999999999999
Q ss_pred cCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEeCCeEEEec
Q 000774 427 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 491 (1293)
Q Consensus 427 ~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 491 (1293)
.+|+++||||||++||+.+.+++.+.+.+... .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999986655443 48999999999998875 8999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=335.87 Aligned_cols=200 Identities=29% Similarity=0.504 Sum_probs=162.0
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------ecCcE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 351 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~~~i 351 (1293)
|+++|++++|+ ++++|+|+||++++||++||+||||||||||+++|+|+++|++|.... .+..+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecC---CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 47899999996 357999999999999999999999999999999999999999884321 13459
Q ss_pred EEEcCCccccC-ccHHHHHccCCCCC--H---HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 000774 352 AYVPQVSWIFN-ATVRDNILFGSAFE--P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 425 (1293)
Q Consensus 352 ~~v~Q~~~l~~-~Tv~eni~~g~~~~--~---~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral 425 (1293)
+|++|++.+|. .|++||+.++.... . ++..+.++.. ..++ ........+||||||||++|||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l~----~~~~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRLK----ERRKQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhhh----hhhhCchhhCCHHHHHHHHHHHHH
Confidence 99999998876 59999998763221 1 1122222222 1111 123455678999999999999999
Q ss_pred hcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHh
Q 000774 426 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 497 (1293)
Q Consensus 426 ~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 497 (1293)
+.+|+++||||||++||+.+.+.+++.+.+...+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999998665544468999999999998765 8999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=341.64 Aligned_cols=206 Identities=23% Similarity=0.365 Sum_probs=169.0
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCCcee-----------
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV----------- 346 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~-----~~~g~~~~----------- 346 (1293)
+.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|....
T Consensus 5 ~~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEEC---CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 4699999999996 3579999999999999999999999999999999999864 46773211
Q ss_pred ---ecCcEEEEcCCccccCccHHHHHccCCC---C-C----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHH
Q 000774 347 ---IRGTVAYVPQVSWIFNATVRDNILFGSA---F-E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 415 (1293)
Q Consensus 347 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~---~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGq 415 (1293)
.+..|+|++|++.+|..||+||+.++.. . . .+++.++++.+++.+.+. +.++....+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 1346999999999988899999987521 1 1 234455566666644322 12345567999999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChH
Q 000774 416 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 494 (1293)
Q Consensus 416 kqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 494 (1293)
|||++|||||+.+|++|||||||++||+.+.+++.+.+.+. .+++|+|++||+++++. .||+|++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL-KARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998866544 45789999999999986 48999999999999999998
Q ss_pred HHhhc
Q 000774 495 DLSNN 499 (1293)
Q Consensus 495 ~l~~~ 499 (1293)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 88654
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=344.34 Aligned_cols=207 Identities=28% Similarity=0.419 Sum_probs=173.8
Q ss_pred cEEEEeeEEEcCCCC---CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------e
Q 000774 284 AISIRNGYFSWDSKA---ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------I 347 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~---~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~ 347 (1293)
.++++|++++|+... ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.... .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 589999999997421 357999999999999999999999999999999999999999884211 2
Q ss_pred cCcEEEEcCCcc--ccCccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHH
Q 000774 348 RGTVAYVPQVSW--IFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 418 (1293)
Q Consensus 348 ~~~i~~v~Q~~~--l~~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqR 418 (1293)
++.+||++|+|. ++..|+.+|+.|+.. .+ .+++.++++.+++.+..+..+ .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 346999999984 567799999988631 12 234566777778776655444 5899999999
Q ss_pred HHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHh
Q 000774 419 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 497 (1293)
Q Consensus 419 ialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 497 (1293)
++|||||+.+|+++||||||++||+.+.+.+.+.+.+... .|.|+|+|||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999886655433 489999999999999889999999999999999999987
Q ss_pred hccH
Q 000774 498 NNGE 501 (1293)
Q Consensus 498 ~~~~ 501 (1293)
....
T Consensus 233 ~~~~ 236 (280)
T PRK13633 233 KEVE 236 (280)
T ss_pred cChH
Confidence 6543
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=337.58 Aligned_cols=201 Identities=20% Similarity=0.370 Sum_probs=166.0
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----e-------cCcEEE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----I-------RGTVAY 353 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----~-------~~~i~~ 353 (1293)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... + +..++|
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYG---ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 78999999996 357999999999999999999999999999999999999999984321 1 135999
Q ss_pred EcCCccc-cCccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 000774 354 VPQVSWI-FNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 425 (1293)
Q Consensus 354 v~Q~~~l-~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral 425 (1293)
++|++.+ +..|++||+.++.. ... ++..+.++..++.+ ..+....+||||||||++|||||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-----------RADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHH
Confidence 9999987 57899999986521 121 12333444444432 23455678999999999999999
Q ss_pred hcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHhhc
Q 000774 426 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 426 ~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
+.+|+++||||||++||+.+.+++.+.+.+... +|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999986655442 58999999999999988999999999999999999887654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=343.90 Aligned_cols=207 Identities=23% Similarity=0.344 Sum_probs=172.3
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 351 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i 351 (1293)
.|+++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.... .+..|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 589999999997432346999999999999999999999999999999999999999984321 23469
Q ss_pred EEEcCCcc--ccCccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000774 352 AYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 422 (1293)
Q Consensus 352 ~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialA 422 (1293)
+|++|++. ++..||.|||.++.. ... +++..+++.+++.+..+. ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 99999984 568899999987521 222 234566677777654433 3468999999999999
Q ss_pred HHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHhhccH
Q 000774 423 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 501 (1293)
Q Consensus 423 ral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 501 (1293)
|||+.+|+++||||||++||+.+.+.+.+.+.+...+ |.|+|++||+++++..||+|++|++|++++.|+++++....+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 9999999999999999999999999999866554443 899999999999998899999999999999999999876543
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=343.90 Aligned_cols=206 Identities=24% Similarity=0.394 Sum_probs=171.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCC--Ccee-------------e
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD--ASAV-------------I 347 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g--~~~~-------------~ 347 (1293)
..|+++|++|+|+. ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++| +.+. .
T Consensus 4 ~~l~i~~l~~~~~~-~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPD-SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCC-CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 36899999999963 235799999999999999999999999999999999999999873 2222 1
Q ss_pred cCcEEEEcCCcc--ccCccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHH
Q 000774 348 RGTVAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 418 (1293)
Q Consensus 348 ~~~i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqR 418 (1293)
+..|||++|++. +++.||.|||.++.. .+. +++.++++.+++.+..+..+ .+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHH
Confidence 346999999984 568899999987622 222 23556677777765554443 5899999999
Q ss_pred HHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHh
Q 000774 419 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 497 (1293)
Q Consensus 419 ialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 497 (1293)
++|||||+.+|+++||||||++||+.+.+++.+.+..... .|+|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999886655443 389999999999999889999999999999999999886
Q ss_pred hcc
Q 000774 498 NNG 500 (1293)
Q Consensus 498 ~~~ 500 (1293)
...
T Consensus 232 ~~~ 234 (282)
T PRK13640 232 SKV 234 (282)
T ss_pred cCH
Confidence 643
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=383.61 Aligned_cols=94 Identities=14% Similarity=0.243 Sum_probs=84.9
Q ss_pred hhcCCCCCChhHHHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhccCEEEE
Q 000774 1039 VSEAGENFSVGQRQLLSLSRALLRR--SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILL 1115 (1293)
Q Consensus 1039 ~~~~~~~LSgGqkqrl~lArall~~--p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~v 1115 (1293)
+++...+|||||-||+-||+.|-.+ -=++||||||.||-+.....+.+.|+++. .|.|||+|-||.++++.||+|+-
T Consensus 1381 L~R~~~TLSGGE~QRirLa~~lgs~L~gvlYVLDEPSiGLHp~D~~~Li~~L~~Lrd~GNTvivVEHd~~~i~~AD~iid 1460 (1809)
T PRK00635 1381 LGQEQDTLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDRSGSLAEHADHLIH 1460 (1809)
T ss_pred ccCCCCCCcchHHHHHHHHHHhcCCCceeEEEeCCCCcCCChhHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 3466778999999999999999876 35788999999999999999999999987 48999999999999999999999
Q ss_pred E------eCCeEeeecChhhhhh
Q 000774 1116 L------DSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1116 l------~~G~i~~~g~~~el~~ 1132 (1293)
| ..|+|+.+|+++++..
T Consensus 1461 iGPgAG~~GG~iv~~G~~~~l~~ 1483 (1809)
T PRK00635 1461 LGPGSGPQGGYLLSTSALKQSQP 1483 (1809)
T ss_pred eCCCccCCCCEEEecCCHHHHhh
Confidence 8 4699999999999974
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=300.51 Aligned_cols=209 Identities=27% Similarity=0.366 Sum_probs=172.2
Q ss_pred cEEEEEEEEEecCC--CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHH---H
Q 000774 908 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 982 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 982 (1293)
.|++++++++.+.. .-.+|++|+|.|++||.+|||||||||||||+-+++|+-+|++|+|.+.|+++.+++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 48889998887542 236899999999999999999999999999999999999999999999999999888554 3
Q ss_pred h-hhceEEcccccccc-ccHhhhcCCC----CCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 000774 983 R-KILGIIPQSPVLFS-GTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 1056 (1293)
Q Consensus 983 r-~~i~~v~Q~~~lf~-~ti~~nl~~~----~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 1056 (1293)
| +++|+|+|...|.. .|-.||...- ++...+. .....+++++ .|+...+...+.+|||||+||++|
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~------~~~A~~lL~~--vGLg~Rl~HyP~qLSGGEQQRVAi 157 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADS------RAGAKALLEA--VGLGKRLTHYPAQLSGGEQQRVAL 157 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccH------HHHHHHHHHH--hCcccccccCccccCchHHHHHHH
Confidence 3 46999999998875 5999998531 1111111 1112233333 244455555667899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhccCEEEEEeCCeEeee
Q 000774 1057 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1124 (1293)
Q Consensus 1057 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 1124 (1293)
|||+...|+||+-||||-+||.+|-+.|.+.+..+. .+.|.++||||.....+|||++-|.+|++++.
T Consensus 158 ARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 158 ARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999998765 47899999999999999999999999999753
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=328.29 Aligned_cols=195 Identities=23% Similarity=0.315 Sum_probs=162.1
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....|++++|
T Consensus 2 l~~~~l~~~~~~~--~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHDQ--PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCCe--eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 7899999999753 69999999999999999999999999999999999999999999999998865 34567889999
Q ss_pred Ecccccccc-ccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000774 989 IPQSPVLFS-GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1067 (1293)
Q Consensus 989 v~Q~~~lf~-~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 1067 (1293)
+||++.++. .|+++|+.+.......+ ..+.+.++.+ ++....+....+||||||||++||||++++|++|
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~l 149 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGA-------VGITELCRLF--SLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLW 149 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcch-------HHHHHHHHHc--CCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 999998874 69999987431111110 1233444443 2333344455679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhccCEEEE
Q 000774 1068 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILL 1115 (1293)
Q Consensus 1068 lLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~v 1115 (1293)
||||||++||+.+.+.+.+.|++.. .++|+|++||+.+.+..||.-.+
T Consensus 150 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999864 47899999999999999997654
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=338.59 Aligned_cols=205 Identities=28% Similarity=0.400 Sum_probs=167.8
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----CCCcee------------
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASAV------------ 346 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~-----~g~~~~------------ 346 (1293)
.++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|....
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~ 77 (247)
T TIGR00972 1 AIEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77 (247)
T ss_pred CEEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccch
Confidence 3789999999963 46999999999999999999999999999999999999987 774211
Q ss_pred --ecCcEEEEcCCccccCccHHHHHccCCC----CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHH
Q 000774 347 --IRGTVAYVPQVSWIFNATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 416 (1293)
Q Consensus 347 --~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqk 416 (1293)
.+..|+|+||++.+|..|++||+.++.. .+. +++.++++..++...+. ........+||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 150 (247)
T TIGR00972 78 VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQ 150 (247)
T ss_pred HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHH
Confidence 1346999999999988999999987521 111 23455566666653221 123345579999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHH
Q 000774 417 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 495 (1293)
Q Consensus 417 qRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 495 (1293)
||++|||||+.+|+++||||||++||+.+.+.+++.+.+. .+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 151 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (247)
T TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQ 229 (247)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999998765543 34589999999999886 489999999999999999988
Q ss_pred Hhhc
Q 000774 496 LSNN 499 (1293)
Q Consensus 496 l~~~ 499 (1293)
+.+.
T Consensus 230 ~~~~ 233 (247)
T TIGR00972 230 IFTN 233 (247)
T ss_pred HHhC
Confidence 7643
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=339.78 Aligned_cols=205 Identities=21% Similarity=0.333 Sum_probs=169.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCCCCcee------------ec
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP---PVSDASAV------------IR 348 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~---~~~g~~~~------------~~ 348 (1293)
.|+++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|.... .+
T Consensus 2 ~~~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYG---KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEEC---CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 478999999996 3579999999999999999999999999999999999984 57774221 23
Q ss_pred CcEEEEcCCccccCccHHHHHccCCCC---------CHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000774 349 GTVAYVPQVSWIFNATVRDNILFGSAF---------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 419 (1293)
Q Consensus 349 ~~i~~v~Q~~~l~~~Tv~eni~~g~~~---------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRi 419 (1293)
..|+|+||++.+|..|++||+.++... ..+++.+.++.+++...+.. .....+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 469999999999989999999875211 11234556677776544332 23445679999999999
Q ss_pred HHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhh
Q 000774 420 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 498 (1293)
Q Consensus 420 alAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 498 (1293)
+|||||+.+|+++||||||++||+.+..++.+.+.+. .+++|+|+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999998866554 45899999999999886 589999999999999999998764
Q ss_pred c
Q 000774 499 N 499 (1293)
Q Consensus 499 ~ 499 (1293)
.
T Consensus 231 ~ 231 (246)
T PRK14269 231 N 231 (246)
T ss_pred C
Confidence 3
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=344.20 Aligned_cols=203 Identities=29% Similarity=0.507 Sum_probs=173.9
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-----------ecCcEE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 352 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-----------~~~~i~ 352 (1293)
.++++|+++.|+. ++.+|+||||+|++|+++|++||||||||||+++|+|++.|++|.... .+++||
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 4788999999962 468999999999999999999999999999999999999999984322 234699
Q ss_pred EEcCCcccc-CccHHHHHccCC-----C--CCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000774 353 YVPQVSWIF-NATVRDNILFGS-----A--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 424 (1293)
Q Consensus 353 ~v~Q~~~l~-~~Tv~eni~~g~-----~--~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAra 424 (1293)
|+||+|.++ ..|++||+.|.. + .+.+++.+.++..++.+.. .....+||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 999999886 689999998742 1 1245677888888877622 22346899999999999999
Q ss_pred hhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCC-cEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhhc
Q 000774 425 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG-KTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 425 l~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~-~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
|+.+|++|||||||+||||.++..+++.+.....+| +||+++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 999999999999999999999999998777666666 799999999999986 899999999999999998886543
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=333.66 Aligned_cols=199 Identities=27% Similarity=0.503 Sum_probs=164.4
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-----------ecCcEEE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 353 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-----------~~~~i~~ 353 (1293)
|+++|+++.|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4789999999631 267999999999999999999999999999999999999999984321 1345999
Q ss_pred EcCCcccc-CccHHHHHccCC---CCCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 000774 354 VPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 425 (1293)
Q Consensus 354 v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral 425 (1293)
++|++.++ ..|++||+.++. .... +++.++++..++.+..+ ....+||||||||++|||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-----------KRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------ChhhhCCHHHHHHHHHHHHH
Confidence 99999887 689999998642 1121 33455666666654332 23468999999999999999
Q ss_pred hcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHH
Q 000774 426 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 496 (1293)
Q Consensus 426 ~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 496 (1293)
+.+|+++||||||++||+.+.+++.+.+.+. .+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEV-RKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999998865543 446899999999999865 899999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=372.54 Aligned_cols=210 Identities=20% Similarity=0.245 Sum_probs=178.1
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+....++.++|
T Consensus 4 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 8999999999753 59999999999999999999999999999999999999999999999988876676777788999
Q ss_pred Ecccccc--c-------cccHhhhcCCCCCCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 000774 989 IPQSPVL--F-------SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1059 (1293)
Q Consensus 989 v~Q~~~l--f-------~~ti~~nl~~~~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 1059 (1293)
+||++.+ + ..|+++|+.... ..++++.++++.. |++...+....+||||||||++||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~la~a 149 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQF-----------GITALLDRRFKYLSTGETRKTLLCQA 149 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHc-----------CCHhhhhCCcccCCHHHHHHHHHHHH
Confidence 9998753 2 348888875321 1122333444443 44444455667899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhhh
Q 000774 1060 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1060 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1132 (1293)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++.+.. ||+|++|++|+++..|+++++.+
T Consensus 150 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 150 LMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999998654 6899999999999877 99999999999999999998864
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=334.17 Aligned_cols=193 Identities=24% Similarity=0.419 Sum_probs=157.8
Q ss_pred EEEEeeEEEcCCCC-CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------ec
Q 000774 285 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 348 (1293)
Q Consensus 285 i~~~~~~~~y~~~~-~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------~~ 348 (1293)
++++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .+
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996321 247999999999999999999999999999999999999999984321 01
Q ss_pred -CcEEEEcCCcccc-CccHHHHHccCC---CCC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000774 349 -GTVAYVPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 419 (1293)
Q Consensus 349 -~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRi 419 (1293)
..|+|++|++.+| ..|++||+.++. ..+ .+++.+.++..++.+..+ ....+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-----------HRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHH
Confidence 4699999999887 579999998642 122 123445555555543333 33468999999999
Q ss_pred HHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEeCCeEE
Q 000774 420 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVK 488 (1293)
Q Consensus 420 alAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~ 488 (1293)
+|||||+.+|++|||||||++||+.+.+.+.+.+.+... .++|+|++||+++++..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999999886655433 479999999999999889999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=343.06 Aligned_cols=203 Identities=23% Similarity=0.358 Sum_probs=167.4
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------e
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 347 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------~ 347 (1293)
..|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .
T Consensus 6 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 3699999999996 357999999999999999999999999999999999999999884211 1
Q ss_pred cCcEEEEcCCccccC-ccHHHHHccCC----CCCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHH
Q 000774 348 RGTVAYVPQVSWIFN-ATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 418 (1293)
Q Consensus 348 ~~~i~~v~Q~~~l~~-~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqR 418 (1293)
+..++|++|++.+|. .|+.||+.++. ..+. +++.+.++..++.+..+ ....+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-----------LMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHH
Confidence 346999999999885 59999997641 1122 23334455555543332 2346899999999
Q ss_pred HHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHH
Q 000774 419 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 496 (1293)
Q Consensus 419 ialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 496 (1293)
++|||||+.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|+|||+++++.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999998866554333 7999999999998875 899999999999999999998
Q ss_pred hhc
Q 000774 497 SNN 499 (1293)
Q Consensus 497 ~~~ 499 (1293)
.+.
T Consensus 232 ~~~ 234 (269)
T PRK11831 232 QAN 234 (269)
T ss_pred hcC
Confidence 764
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=344.21 Aligned_cols=200 Identities=28% Similarity=0.402 Sum_probs=165.9
Q ss_pred EEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------------ecC
Q 000774 286 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------IRG 349 (1293)
Q Consensus 286 ~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------------~~~ 349 (1293)
.++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+.
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4567777775 357999999999999999999999999999999999999999884321 024
Q ss_pred cEEEEcCCcccc-CccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000774 350 TVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 421 (1293)
Q Consensus 350 ~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRial 421 (1293)
.++|++|++.+| +.|+.||+.++.. .. .+++.+.++..++.+.++..+ .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 699999999887 6799999987421 11 234556677777765555444 4899999999999
Q ss_pred HHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhc
Q 000774 422 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 422 Aral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
||||+.+|++|||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999886655433 4899999999999876 4899999999999999999988654
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=340.94 Aligned_cols=206 Identities=30% Similarity=0.442 Sum_probs=170.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 350 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~ 350 (1293)
..++++|++++|+. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... +++.
T Consensus 6 ~~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 46999999999963 2467999999999999999999999999999999999999999884211 2446
Q ss_pred EEEEcCCcc--ccCccHHHHHccCCC---CCHH----HHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000774 351 VAYVPQVSW--IFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 421 (1293)
Q Consensus 351 i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRial 421 (1293)
|+|++|++. ++..||+||+.++.. .+.+ ++.+.++..++.+.++. ...+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK-----------EPQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------CcccCCHHHHHHHHH
Confidence 999999984 457899999987521 2222 24455666666554443 346899999999999
Q ss_pred HHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHhhcc
Q 000774 422 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 500 (1293)
Q Consensus 422 Aral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 500 (1293)
||||+.+|++|||||||++||+.+.+.+++.+.+...+ ++|+|++||+++.+..||++++|++|++++.|+.+++....
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999999866554444 58999999999998889999999999999999988876543
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=332.96 Aligned_cols=196 Identities=23% Similarity=0.397 Sum_probs=160.8
Q ss_pred EEEEeeEEEcCCCCC-CCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-----------ecCcEE
Q 000774 285 ISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 352 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~-~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-----------~~~~i~ 352 (1293)
|+++|++++|+.... +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.... .++.++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 789999999963211 27999999999999999999999999999999999999999984321 134699
Q ss_pred EEcCCccccC-ccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000774 353 YVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 424 (1293)
Q Consensus 353 ~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAra 424 (1293)
|++|++.+|. .||+||+.+... .+ .+++.++++..++.+..+ ....+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHHH
Confidence 9999998886 599999976421 11 133455566666544333 3456899999999999999
Q ss_pred hhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEec
Q 000774 425 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 491 (1293)
Q Consensus 425 l~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 491 (1293)
|+.+|+++||||||++||+.+.+++.+.+.+...+|+|+|+|||+++++.. +|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999998766554568999999999998764 8999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=373.65 Aligned_cols=212 Identities=22% Similarity=0.358 Sum_probs=177.7
Q ss_pred EEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChH-HHhhhceEE
Q 000774 911 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKILGII 989 (1293)
Q Consensus 911 ~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~-~~r~~i~~v 989 (1293)
++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+.++|+
T Consensus 1 ~~nl~~~~~~~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPGV--KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCCE--EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 36899999653 699999999999999999999999999999999999999999999999998765543 356789999
Q ss_pred ccccccccc-cHhhhcCCCCC------CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 990 PQSPVLFSG-TVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 990 ~Q~~~lf~~-ti~~nl~~~~~------~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
||++.++.. |+++|+.+... ....+.. ..+.+.++.+ |++........+||||||||++|||||+.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMY-----RDTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 999987754 99999874211 1111111 1233445553 55555566678899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 999999999999999999999999998864 47899999999999876 9999999999999999988864
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=341.46 Aligned_cols=202 Identities=31% Similarity=0.448 Sum_probs=166.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-----------------
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 346 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------------- 346 (1293)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|....
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFH---GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEEC---CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 489999999996 357999999999999999999999999999999999999999884311
Q ss_pred ---ecCcEEEEcCCcccc-CccHHHHHccCC----CCCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChH
Q 000774 347 ---IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 414 (1293)
Q Consensus 347 ---~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 414 (1293)
.+..++|++|++.++ ..|++||+.++. .... +++.+.++..++... ......+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChH
Confidence 134699999999887 579999997641 1121 223344444444322 23455799999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecCh
Q 000774 415 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 493 (1293)
Q Consensus 415 qkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 493 (1293)
||||++|||||+.+|++|||||||++||+.+.+++.+.+.....+|+|+|++||+++++.. ||+|++|++|++++.|++
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999988665544458999999999999865 899999999999999999
Q ss_pred HHHhhc
Q 000774 494 EDLSNN 499 (1293)
Q Consensus 494 ~~l~~~ 499 (1293)
+++.+.
T Consensus 229 ~~~~~~ 234 (250)
T PRK11264 229 KALFAD 234 (250)
T ss_pred HHHhcC
Confidence 887643
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=336.13 Aligned_cols=201 Identities=29% Similarity=0.447 Sum_probs=166.1
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee--------------ecCc
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGT 350 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~--------------~~~~ 350 (1293)
++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.... .+..
T Consensus 2 l~~~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEEC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 78999999996 357999999999999999999999999999999999999999984211 1336
Q ss_pred EEEEcCCcccc-CccHHHHHccCC----CCCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000774 351 VAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 421 (1293)
Q Consensus 351 i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRial 421 (1293)
++|++|++.++ ..||+||+.++. ..+. +++.++++..++.... ......||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERA-----------HHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHH-----------hcChhhcCHHHHHHHHH
Confidence 99999999887 579999998752 1111 2234445555544333 33446899999999999
Q ss_pred HHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhhc
Q 000774 422 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 422 Aral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
||||+.+|+++||||||++||+.+.+++.+.+.+...+++|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999988665544458999999999999865 899999999999999999887654
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=333.09 Aligned_cols=197 Identities=25% Similarity=0.383 Sum_probs=162.4
Q ss_pred CcEEEEeeEEEcCCCCC-CCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----e----------
Q 000774 283 PAISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----I---------- 347 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~-~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----~---------- 347 (1293)
+.|+++|++++|+++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... +
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 36899999999974211 35999999999999999999999999999999999999999984321 0
Q ss_pred --cCcEEEEcCCccccC-ccHHHHHccCC---CCC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHH
Q 000774 348 --RGTVAYVPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 417 (1293)
Q Consensus 348 --~~~i~~v~Q~~~l~~-~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkq 417 (1293)
+..++|++|++.++. .|+.||+.++. ..+ .+++.+.++..++.+..+..+ .+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~q 153 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQ 153 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHH
Confidence 146999999998875 69999997642 111 234556677777765544433 589999999
Q ss_pred HHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEeCCeEEEe
Q 000774 418 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 490 (1293)
Q Consensus 418 RialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~ 490 (1293)
|++|||||+.+|+++||||||++||+.+.+++++.+.+... .|+|+|++||+++++..||++++|++|++++.
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999886655433 37899999999999988999999999998753
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=329.60 Aligned_cols=195 Identities=24% Similarity=0.344 Sum_probs=163.3
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhce
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.++++|++++|++. ++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 48999999999753 699999999999999999999999999999999999999999999999988642 3456799
Q ss_pred EEccccccccc-cHhhhcCCCC---CC-CHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFS---EH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~---~~-~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
|+||++.++.. |+++|+.... .. .++.+.+.++.. ++....+.....||||||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIV-----------GLAGYEDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHc-----------CChhhccCChhhCCHHHHHHHHHHHHHhc
Confidence 99999998876 9999985421 11 112223333332 33333455567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeC
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDS 1118 (1293)
Q Consensus 1063 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~ 1118 (1293)
+|++|||||||++||+++.+.+.+.|++.. .++|+|++||+++.+.. ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998754 46899999999999977 999999864
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=339.73 Aligned_cols=204 Identities=28% Similarity=0.439 Sum_probs=168.4
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------------
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 346 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------- 346 (1293)
..++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|....
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 3589999999996 357999999999999999999999999999999999999999883211
Q ss_pred ---------ecCcEEEEcCCccccC-ccHHHHHccCC----CCCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCC
Q 000774 347 ---------IRGTVAYVPQVSWIFN-ATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 408 (1293)
Q Consensus 347 ---------~~~~i~~v~Q~~~l~~-~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g 408 (1293)
.+..++|+||++.++. .|++||+.++. .... ++..+.++..++.+.. .+...
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 1346999999999885 69999997642 1121 2344455555554332 12345
Q ss_pred CCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeE
Q 000774 409 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 487 (1293)
Q Consensus 409 ~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i 487 (1293)
.+||||||||++|||||+++|+++||||||++||+.+.+++.+.+.+...+|+|+|+|||+++++.. ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 6899999999999999999999999999999999999999998665544468999999999999985 899999999999
Q ss_pred EEecChHHHhhc
Q 000774 488 KEEGTFEDLSNN 499 (1293)
Q Consensus 488 ~~~g~~~~l~~~ 499 (1293)
++.|+++++...
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999887643
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=337.99 Aligned_cols=204 Identities=26% Similarity=0.422 Sum_probs=165.7
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 352 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i~ 352 (1293)
++++|++++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGG--GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCC--cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 468999999963 157999999999999999999999999999999999999999884321 134699
Q ss_pred EEcCCcccc-CccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000774 353 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 424 (1293)
Q Consensus 353 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAra 424 (1293)
|++|++.+| ..||+||+.++.. .+ .+++.+.++..++... ......+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA---------EFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------HHHhcChhhCCHHHHHHHHHHHH
Confidence 999999887 5799999987521 12 1234445555555420 01234557899999999999999
Q ss_pred hhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhc
Q 000774 425 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 425 l~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
|+.+|+++||||||++||+.+.+++.+.+.+... .|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999887665444 3899999999999876 4899999999999999998887543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=343.24 Aligned_cols=207 Identities=24% Similarity=0.408 Sum_probs=167.5
Q ss_pred cEEEEeeEEEcCCCC--CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------
Q 000774 284 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 346 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~--~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~--------------- 346 (1293)
.|+++|++++|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999996321 147999999999999999999999999999999999999999884311
Q ss_pred -ecCcEEEEcCCc--cccCccHHHHHccCCC---CCHH----HHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHH
Q 000774 347 -IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 416 (1293)
Q Consensus 347 -~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqk 416 (1293)
.+..|+|++|++ .+|+.|++||+.++.. .+.+ +..++++..++... .......+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHH
Confidence 124599999997 5778899999987521 2222 22334444454321 12344578999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHH
Q 000774 417 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 495 (1293)
Q Consensus 417 qRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 495 (1293)
||++|||||+.+|++|||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999998876654445899999999999886 489999999999999999998
Q ss_pred Hhhcc
Q 000774 496 LSNNG 500 (1293)
Q Consensus 496 l~~~~ 500 (1293)
+.+..
T Consensus 232 ~~~~~ 236 (280)
T PRK13649 232 IFQDV 236 (280)
T ss_pred HhcCH
Confidence 86643
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=330.40 Aligned_cols=193 Identities=24% Similarity=0.412 Sum_probs=158.9
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee--------ecCcEEEEcC
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------IRGTVAYVPQ 356 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~--------~~~~i~~v~Q 356 (1293)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .+..++|++|
T Consensus 1 l~~~~l~~~~~---~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 47899999996 357999999999999999999999999999999999999999984321 1346999999
Q ss_pred CccccC-ccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcC
Q 000774 357 VSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 428 (1293)
Q Consensus 357 ~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~ 428 (1293)
++.++. .|++||+.++.. .. .+++.+.++..++.... .....+||||||||++|||||+.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHHHhcC
Confidence 998875 699999976421 11 12344455555554333 234468999999999999999999
Q ss_pred CCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEec
Q 000774 429 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 491 (1293)
Q Consensus 429 ~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 491 (1293)
|+++||||||++||+.+.+++.+.+.+...+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999998765544468999999999999865 8999999999998654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=371.97 Aligned_cols=211 Identities=26% Similarity=0.368 Sum_probs=176.3
Q ss_pred cEEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCCh-HHHhhhc
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRKIL 986 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~~i 986 (1293)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++|
T Consensus 4 ~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPGV--KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECCE--EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 38999999999753 69999999999999999999999999999999999999999999999999875544 3457789
Q ss_pred eEEccccccccc-cHhhhcCCCCC------CCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 000774 987 GIIPQSPVLFSG-TVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1059 (1293)
Q Consensus 987 ~~v~Q~~~lf~~-ti~~nl~~~~~------~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 1059 (1293)
+|+||++.+|.. |+++|+.+... ....+.. ..+.++++.+ |++........+||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHHH
Confidence 999999988875 99999975311 1111111 1233455554 44444455667899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecCh
Q 000774 1060 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1127 (1293)
Q Consensus 1060 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1127 (1293)
|+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||||++|++|++++.++.
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999865 47899999999999877 999999999999877654
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=333.76 Aligned_cols=203 Identities=26% Similarity=0.376 Sum_probs=164.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------ecC
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 349 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~~ 349 (1293)
..++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+.
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 80 (237)
T PRK11614 4 VMLSFDKVSAHYG---KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80 (237)
T ss_pred cEEEEEeEEEeeC---CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHh
Confidence 3589999999996 367999999999999999999999999999999999999999884211 134
Q ss_pred cEEEEcCCccccC-ccHHHHHccCCC-CCHHH----HHHHHHHc-CChhHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000774 350 TVAYVPQVSWIFN-ATVRDNILFGSA-FEPAR----YEKAIDVT-SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 422 (1293)
Q Consensus 350 ~i~~v~Q~~~l~~-~Tv~eni~~g~~-~~~~~----~~~~~~~~-~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialA 422 (1293)
.++|++|++.+|. .||+||+.++.. ....+ ..++++.. ++.+ .......+||||||||++||
T Consensus 81 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la 149 (237)
T PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIG 149 (237)
T ss_pred CEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHH
Confidence 5999999998886 699999987532 11111 12222222 1111 12334578999999999999
Q ss_pred HHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhc
Q 000774 423 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 423 ral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
|||+.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++. .||++++|++|++++.|+++++...
T Consensus 150 ~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 9999999999999999999999999998876654456899999999999765 5899999999999999999998653
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=337.92 Aligned_cols=206 Identities=27% Similarity=0.378 Sum_probs=169.6
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCCcee-----------
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV----------- 346 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~-----~~~g~~~~----------- 346 (1293)
..++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|....
T Consensus 12 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 12 SKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred ceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 46999999999962 579999999999999999999999999999999999986 46773211
Q ss_pred ---ecCcEEEEcCCccccCccHHHHHccCCC----CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHH
Q 000774 347 ---IRGTVAYVPQVSWIFNATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 415 (1293)
Q Consensus 347 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGq 415 (1293)
.++.|+|++|++.+|..|++||+.++.. .+. +++.++++..++...+. ..++....+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHHH
Confidence 2346999999999888999999987532 222 33455666666543222 12445667999999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChH
Q 000774 416 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 494 (1293)
Q Consensus 416 kqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 494 (1293)
|||++|||||+.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+. .||++++|++|++++.|+.+
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998866544 45789999999999986 48999999999999999999
Q ss_pred HHhhc
Q 000774 495 DLSNN 499 (1293)
Q Consensus 495 ~l~~~ 499 (1293)
++.+.
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 88654
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=331.63 Aligned_cols=189 Identities=25% Similarity=0.452 Sum_probs=157.8
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------ecC
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 349 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------~~~ 349 (1293)
++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+.
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 357999999999999999999999999999999999999999884311 234
Q ss_pred cEEEEcCCcccc-CccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000774 350 TVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 421 (1293)
Q Consensus 350 ~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRial 421 (1293)
.++|++|++.+| ..|++||+.++.. .. .+++.+.++..++.+..+.. ..+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF-----------PEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHHH
Confidence 699999999987 5799999987521 11 23455666666665544433 35899999999999
Q ss_pred HHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCe
Q 000774 422 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 486 (1293)
Q Consensus 422 Aral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~ 486 (1293)
||||+.+|+++||||||++||+.+..++.+.+.....+|+|+|+|||+++++.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999998766544468999999999999875 89999999984
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=334.68 Aligned_cols=201 Identities=27% Similarity=0.434 Sum_probs=165.0
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-----------------
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 346 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------------- 346 (1293)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|....
T Consensus 2 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYG---AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEEC---CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 478999999996 357999999999999999999999999999999999999999884321
Q ss_pred -ecCcEEEEcCCccccC-ccHHHHHccCC----CCCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHH
Q 000774 347 -IRGTVAYVPQVSWIFN-ATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 416 (1293)
Q Consensus 347 -~~~~i~~v~Q~~~l~~-~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqk 416 (1293)
.+..|+|+||++.+|. .|+.||+.++. .... +++.+.++..++....+ ....+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-----------RFPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHH
Confidence 1346999999999875 69999997421 1111 22344455555543333 34468999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHH
Q 000774 417 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 495 (1293)
Q Consensus 417 qRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 495 (1293)
||++|||||+.+|+++||||||++||+.+.+++.+.+.+...+|+|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999988665544458999999999999865 89999999999999999887
Q ss_pred Hhh
Q 000774 496 LSN 498 (1293)
Q Consensus 496 l~~ 498 (1293)
+..
T Consensus 228 ~~~ 230 (242)
T PRK11124 228 FTQ 230 (242)
T ss_pred hcC
Confidence 653
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=337.56 Aligned_cols=201 Identities=26% Similarity=0.432 Sum_probs=167.9
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 351 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i 351 (1293)
.++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.... .++.+
T Consensus 2 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYG---TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEEC---CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 478999999996 357999999999999999999999999999999999999999984321 12359
Q ss_pred EEEcCCccccC-ccHHHHHccCCC-----C---C---HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000774 352 AYVPQVSWIFN-ATVRDNILFGSA-----F---E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 419 (1293)
Q Consensus 352 ~~v~Q~~~l~~-~Tv~eni~~g~~-----~---~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRi 419 (1293)
+|++|++.++. .|+.||+.++.. . . .+++.++++..++.+..+ .....||||||||+
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 147 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRA 147 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHH
Confidence 99999998875 499999987521 0 1 224455666666654433 33468999999999
Q ss_pred HHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhh
Q 000774 420 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 498 (1293)
Q Consensus 420 alAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 498 (1293)
+||||++.+|++|||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+. .||++++|++|+++..|+++++..
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999998866554445899999999999986 489999999999999999988765
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=340.14 Aligned_cols=202 Identities=23% Similarity=0.374 Sum_probs=166.8
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee--------------ecCc
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGT 350 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~--------------~~~~ 350 (1293)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..
T Consensus 2 l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 78999999996 357999999999999999999999999999999999999999984311 1246
Q ss_pred EEEEcCCcc--ccCccHHHHHccCC---CCCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000774 351 VAYVPQVSW--IFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 421 (1293)
Q Consensus 351 i~~v~Q~~~--l~~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRial 421 (1293)
|+|++|++. ++..|+.+|+.++. ..+. +++.++++..++.+..+ ....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHH
Confidence 999999985 46779999998741 1222 22344555666544332 2346899999999999
Q ss_pred HHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhcc
Q 000774 422 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 500 (1293)
Q Consensus 422 Aral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 500 (1293)
||||+.+|+++||||||++||+.+.+++.+.+.+...+|+|+|+|||+++.+. .||++++|++|++++.|+++++....
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACT 227 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCh
Confidence 99999999999999999999999999998866654446899999999999986 48999999999999999998876543
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=313.78 Aligned_cols=212 Identities=26% Similarity=0.448 Sum_probs=173.8
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------ecC
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 349 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~~ 349 (1293)
+.++++|++..|+ ...+|++|||++++||+++|+|+||+|||||+++|+|+.+|.+|.+.. .+.
T Consensus 2 ~mL~v~~l~~~YG---~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 2 PMLEVENLSAGYG---KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78 (237)
T ss_pred CceeEEeEeeccc---ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhC
Confidence 3589999999996 368999999999999999999999999999999999999999884322 234
Q ss_pred cEEEEcCCcccc-CccHHHHHccCCCCCHH-HHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhc
Q 000774 350 TVAYVPQVSWIF-NATVRDNILFGSAFEPA-RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 427 (1293)
Q Consensus 350 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~-~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~ 427 (1293)
.|+||||.-.+| +.||.||+.+|...... +.. ...+++..+.+|.- .......+.+|||||+|-+||||||..
T Consensus 79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~----~~~~e~v~~lFP~L-ker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ----ERDLEEVYELFPRL-KERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred CeEeCcccccchhhCcHHHHHhhhhhcccccccc----cccHHHHHHHChhH-HHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 599999999998 78999999987432211 110 11133444555542 224567788999999999999999999
Q ss_pred CCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEeCCeEEEecChHHHhhccHH
Q 000774 428 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNNGEL 502 (1293)
Q Consensus 428 ~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 502 (1293)
+|++|+|||||.+|-|...+.|++.+.+..++ |-||++|.++..+. +.+||.++|++|+|+.+|+.++|.++...
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v 230 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDV 230 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHH
Confidence 99999999999999999999999877665544 66999999998875 56899999999999999999999887543
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=339.81 Aligned_cols=204 Identities=28% Similarity=0.441 Sum_probs=170.0
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 351 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i 351 (1293)
.++++|++++|+. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.... .+..+
T Consensus 3 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 4889999999963 346999999999999999999999999999999999999999984321 12359
Q ss_pred EEEcCCcc--ccCccHHHHHccCC---CCCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000774 352 AYVPQVSW--IFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 422 (1293)
Q Consensus 352 ~~v~Q~~~--l~~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialA 422 (1293)
+|++|++. +++.||.||+.++. ..+. +++.+.++..++.+..+.. ...||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRV-----------PHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHHHHHH
Confidence 99999973 67889999998753 1232 2345566666776554443 358999999999999
Q ss_pred HHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhcc
Q 000774 423 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 500 (1293)
Q Consensus 423 ral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 500 (1293)
|||+.+|+++||||||++||+.+.+.+.+.+.....+ |.|+|++||+++++. .||||++|++|++++.|+++++.+..
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCH
Confidence 9999999999999999999999999998866554443 899999999999985 68999999999999999999987654
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=335.09 Aligned_cols=202 Identities=21% Similarity=0.373 Sum_probs=165.3
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 350 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~~~ 350 (1293)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .+..
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYK---GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 488999999996 357999999999999999999999999999999999999999984321 1346
Q ss_pred EEEEcCCccccC-ccHHHHHccCCC----CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000774 351 VAYVPQVSWIFN-ATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 421 (1293)
Q Consensus 351 i~~v~Q~~~l~~-~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRial 421 (1293)
++|++|++.++. .|+.||+.++.. .+. .++.+.++..++.+ .......+||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-----------LRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-----------HhhcchhhCCHHHHHHHHH
Confidence 999999998875 699999987531 111 12333334333322 2344567899999999999
Q ss_pred HHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhc
Q 000774 422 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 422 Aral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
||||+.+|++|||||||++||+.+.+++.+.+.....+|+|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999999998765544446899999999998775 5899999999999999999887653
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=342.68 Aligned_cols=208 Identities=23% Similarity=0.379 Sum_probs=166.3
Q ss_pred CcEEEEeeEEEcCCCC--CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee--------------
Q 000774 283 PAISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------- 346 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~--~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------- 346 (1293)
..|+++|++++|+.+. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|....
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 3589999999996421 136999999999999999999999999999999999999999884311
Q ss_pred ---ecCcEEEEcCCcc--ccCccHHHHHccCCC---CCHH----HHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChH
Q 000774 347 ---IRGTVAYVPQVSW--IFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 414 (1293)
Q Consensus 347 ---~~~~i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 414 (1293)
.++.|+|++|++. ++..|++||+.++.. ...+ ++.+.++..++.. + ..+....+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------~---~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE-------D---YVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-------h---HhcCChhhCCHH
Confidence 1346999999984 567899999987532 1221 2223344444321 1 123455789999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecC
Q 000774 415 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGT 492 (1293)
Q Consensus 415 qkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~ 492 (1293)
||||++|||||+.+|++|||||||++||+.+.+.+++.+.+... .|+|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999886655433 4899999999999876 589999999999999999
Q ss_pred hHHHhhcc
Q 000774 493 FEDLSNNG 500 (1293)
Q Consensus 493 ~~~l~~~~ 500 (1293)
++++.+..
T Consensus 235 ~~~~~~~~ 242 (289)
T PRK13645 235 PFEIFSNQ 242 (289)
T ss_pred HHHHhcCH
Confidence 98886543
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=353.73 Aligned_cols=205 Identities=26% Similarity=0.400 Sum_probs=169.3
Q ss_pred cEEEEeeEEEcCCCC---------------------CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCC
Q 000774 284 AISIRNGYFSWDSKA---------------------ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 342 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~---------------------~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g 342 (1293)
.|+++|+++.|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 477777777775421 12379999999999999999999999999999999999999998
Q ss_pred Ccee----------------ecCcEEEEcCCcccc-CccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCC
Q 000774 343 ASAV----------------IRGTVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPG 398 (1293)
Q Consensus 343 ~~~~----------------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~ 398 (1293)
.... .+..++|++|++.+| ..||+||+.++.. .+ .+++.+.++.+++.+..+..|
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~- 162 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP- 162 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-
Confidence 4321 024699999999988 5799999987631 12 234556677777766555444
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hC
Q 000774 399 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QV 476 (1293)
Q Consensus 399 g~~t~ig~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~ 476 (1293)
.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.+.+... .++|+|+|||+++++. .|
T Consensus 163 ----------~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~ 232 (400)
T PRK10070 163 ----------DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIG 232 (400)
T ss_pred ----------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhC
Confidence 58999999999999999999999999999999999999999887665433 4899999999999876 58
Q ss_pred CeEEEEeCCeEEEecChHHHhhc
Q 000774 477 DRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 477 d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
|+|++|++|++++.|+++++...
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999998765
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=308.15 Aligned_cols=203 Identities=24% Similarity=0.392 Sum_probs=170.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-----------ecCcEE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 352 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-----------~~~~i~ 352 (1293)
.+++.+++++|++ ...+++||||++++||++||.|||||||||+|++|++++.|++|.... .+++||
T Consensus 1 Ml~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 1 MLEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred CeeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcc
Confidence 3688999999974 345899999999999999999999999999999999999999994322 456899
Q ss_pred EEcCCcccc-CccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000774 353 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 424 (1293)
Q Consensus 353 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAra 424 (1293)
+++-+.-++ ..|++|||.|... .. +.+..+..+..++.+.++ .+..++|-|+||||+||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHH
Confidence 999777776 7899999986421 11 234444455555554443 3556899999999999999
Q ss_pred hhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhc
Q 000774 425 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 425 l~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
|.+||++++|||||||||..+.+.+.+.+......|+++|+.||.++.++ .||+++++++|+++..|+.+++...
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999999998877766677999999999999998 5999999999999999999988654
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=339.03 Aligned_cols=206 Identities=26% Similarity=0.378 Sum_probs=169.0
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 350 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~ 350 (1293)
+.++++|++++|++ ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .++.
T Consensus 6 ~~l~i~~l~~~~~~-~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 6 SIIVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred ceEEEEEEEEEcCC-CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 36999999999963 2356999999999999999999999999999999999999999984221 1345
Q ss_pred EEEEcCCcc--ccCccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000774 351 VAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 421 (1293)
Q Consensus 351 i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRial 421 (1293)
++|++|++. ++..|+.+|+.++.. ... +++.++++..++.+..+ ....+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAI 153 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHH
Confidence 999999985 457799999987632 122 23344555555544332 3446899999999999
Q ss_pred HHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEeCCeEEEecChHHHhhcc
Q 000774 422 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 500 (1293)
Q Consensus 422 Aral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 500 (1293)
|||++.+|+++||||||++||+.+.+.+++.+.+... .|+|+|+|||+++.+..||+|++|++|++++.|+++++....
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999999886655433 379999999999998889999999999999999999886653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=338.62 Aligned_cols=203 Identities=27% Similarity=0.402 Sum_probs=169.1
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 350 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~ 350 (1293)
..++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.... .++.
T Consensus 10 ~~l~i~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 10 TTFALRNVSFRVP---GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred ceEEEeeEEEEEC---CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 4699999999996 357999999999999999999999999999999999999999984321 1235
Q ss_pred EEEEcCCcccc-CccHHHHHccCCC--------C---CHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHH
Q 000774 351 VAYVPQVSWIF-NATVRDNILFGSA--------F---EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 418 (1293)
Q Consensus 351 i~~v~Q~~~l~-~~Tv~eni~~g~~--------~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqR 418 (1293)
++|++|++.++ ..|+.||+.++.. . ..+++.+.++.+++.+.++..+ .+||||||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qr 155 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQR 155 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHH
Confidence 99999998765 5699999987521 0 1234566677777765544433 5899999999
Q ss_pred HHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHH
Q 000774 419 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 496 (1293)
Q Consensus 419 ialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 496 (1293)
++|||||+.+|++|||||||++||+.+.+.+.+.+..... .|+|+|++||+++++. .||+|++|++|++++.|+.+++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9999999999999999999999999999999886655433 3899999999999986 5899999999999999999887
Q ss_pred hhc
Q 000774 497 SNN 499 (1293)
Q Consensus 497 ~~~ 499 (1293)
...
T Consensus 236 ~~~ 238 (265)
T PRK10575 236 MRG 238 (265)
T ss_pred cCH
Confidence 653
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=340.66 Aligned_cols=202 Identities=25% Similarity=0.441 Sum_probs=168.1
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee--------------ecCc
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGT 350 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~--------------~~~~ 350 (1293)
++++|++++|+. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... ++..
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999962 357999999999999999999999999999999999999999884311 1346
Q ss_pred EEEEcCCc--cccCccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000774 351 VAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 421 (1293)
Q Consensus 351 i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRial 421 (1293)
|+|++|++ .++..||.||+.++.. ... ++..++++.+++.+..+ ....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHHHHHHHH
Confidence 99999997 4678899999987531 121 23455666666653332 2346899999999999
Q ss_pred HHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhc
Q 000774 422 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 422 Aral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
||||+.+|+++||||||++||+.+..++.+.+.+...+|+|+|++||+++++. .||+|++|++|++++.|+++++...
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999876654445899999999999987 5899999999999999999988654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=370.92 Aligned_cols=214 Identities=23% Similarity=0.400 Sum_probs=177.3
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC--CcceEEECCeecCCCChHH-Hhhh
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMD-LRKI 985 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p--~~G~I~i~g~~i~~~~~~~-~r~~ 985 (1293)
++++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+.
T Consensus 2 l~i~~l~~~~~~~--~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGGV--KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCCe--EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 7899999999643 699999999999999999999999999999999999987 7999999999998776554 3567
Q ss_pred ceEEccccccccc-cHhhhcCCCCC-------CCHHHHHHHHHHhhHHHHHHHccCCcchhh-hcCCCCCChhHHHHHHH
Q 000774 986 LGIIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQV-SEAGENFSVGQRQLLSL 1056 (1293)
Q Consensus 986 i~~v~Q~~~lf~~-ti~~nl~~~~~-------~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~-~~~~~~LSgGqkqrl~l 1056 (1293)
|||+||++.+|.. |+++|+.+... ...++.. ..+.+.++.+ |++... .....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~i 152 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEI 152 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHH
Confidence 9999999988865 99999864321 1111111 1233445543 343322 33456899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhc-cCEEEEEeCCeEeeecChhhhh
Q 000774 1057 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131 (1293)
Q Consensus 1057 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1131 (1293)
||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 999999999999999999999999999999998864 46899999999999977 9999999999999999887653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=346.85 Aligned_cols=207 Identities=22% Similarity=0.334 Sum_probs=169.0
Q ss_pred CcEEEEeeEEEcCCCC----------CCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------
Q 000774 283 PAISIRNGYFSWDSKA----------ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------ 346 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~----------~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------ 346 (1293)
+.|+++|++++|+.+. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 4699999999996321 246999999999999999999999999999999999999999884321
Q ss_pred ---------ecCcEEEEcCCc--ccc-CccHHHHHccCC-----CCCH----HHHHHHHHHcCChhHHhcCCCCCccccc
Q 000774 347 ---------IRGTVAYVPQVS--WIF-NATVRDNILFGS-----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIG 405 (1293)
Q Consensus 347 ---------~~~~i~~v~Q~~--~l~-~~Tv~eni~~g~-----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig 405 (1293)
.++.|+||+|+| .++ ..||.|||.++. ..+. +++.+.++..++... ...
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------LIN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------Hhc
Confidence 245799999998 465 689999996531 1232 233445666665321 123
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEe
Q 000774 406 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVH 483 (1293)
Q Consensus 406 ~~g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~ 483 (1293)
....+|||||||||+|||||+.+|++||+||||++||+.+...+.+.+.+... .|.|+|+||||++.+.. ||+|++|+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 34568999999999999999999999999999999999999999986655443 38999999999999975 89999999
Q ss_pred CCeEEEecChHHHhhc
Q 000774 484 EGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 484 ~G~i~~~g~~~~l~~~ 499 (1293)
+|+|++.|+.+++.++
T Consensus 237 ~G~ive~g~~~~i~~~ 252 (331)
T PRK15079 237 LGHAVELGTYDEVYHN 252 (331)
T ss_pred CCEEEEEcCHHHHHcC
Confidence 9999999999998865
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=339.69 Aligned_cols=207 Identities=19% Similarity=0.297 Sum_probs=167.0
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCCcee----------
Q 000774 282 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV---------- 346 (1293)
Q Consensus 282 ~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~-----~~~g~~~~---------- 346 (1293)
.+.++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|....
T Consensus 19 ~~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 19 EHILEVKDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred CceEEEEEEEEEeC---CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 34699999999996 3579999999999999999999999999999999999864 67774211
Q ss_pred ----ecCcEEEEcCCccccCccHHHHHccCCCC----C----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChH
Q 000774 347 ----IRGTVAYVPQVSWIFNATVRDNILFGSAF----E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 414 (1293)
Q Consensus 347 ----~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~----~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 414 (1293)
.+..++|++|++.+|..|++||+.++... . ++...++++..++...+. ...+....+||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 168 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGG 168 (268)
T ss_pred cHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHH
Confidence 23469999999999988999999865211 1 122334444554432111 1234566799999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecCh
Q 000774 415 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTF 493 (1293)
Q Consensus 415 qkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~ 493 (1293)
||||++|||||+.+|++|||||||++||+.+.+++.+.+.+. .+++|+|++||+++++. .||+|++|++|++++.|++
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 247 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL-KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQT 247 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999998765543 45689999999999876 5899999999999999999
Q ss_pred HHHhhc
Q 000774 494 EDLSNN 499 (1293)
Q Consensus 494 ~~l~~~ 499 (1293)
+++..+
T Consensus 248 ~~~~~~ 253 (268)
T PRK14248 248 EQIFTS 253 (268)
T ss_pred HHHHhC
Confidence 887654
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=312.75 Aligned_cols=203 Identities=24% Similarity=0.406 Sum_probs=166.8
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 350 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~~~ 350 (1293)
.+..+|+.++|. ++++++|+||++++||++++.||||+||||.+.++.|+.+|++|.... -|-.
T Consensus 4 ~L~a~~l~K~y~---kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYK---KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhC---CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 578899999996 578999999999999999999999999999999999999999994321 1235
Q ss_pred EEEEcCCcccc-CccHHHHHccCCCC---CHH------HHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000774 351 VAYVPQVSWIF-NATVRDNILFGSAF---EPA------RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420 (1293)
Q Consensus 351 i~~v~Q~~~l~-~~Tv~eni~~g~~~---~~~------~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRia 420 (1293)
|||+||++.+| ..||+|||..--+. +.+ +.++.++..++.+.. ...+.+||||||+|+.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr-----------~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR-----------DSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHh-----------cCcccccccchHHHHH
Confidence 99999999999 67999999754221 111 122334444433332 3456799999999999
Q ss_pred HHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCc-chhhhCCeEEEEeCCeEEEecChHHHhhc
Q 000774 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 421 lAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~-~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
|||||..+|++++||||++++||.+...|-+.+.....+|-.|+++-|.. ++++-|||.|++.+|++..+|+++++.++
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 99999999999999999999999999999654444455688899999985 56889999999999999999999999877
Q ss_pred c
Q 000774 500 G 500 (1293)
Q Consensus 500 ~ 500 (1293)
+
T Consensus 230 ~ 230 (243)
T COG1137 230 E 230 (243)
T ss_pred h
Confidence 4
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=330.57 Aligned_cols=199 Identities=25% Similarity=0.369 Sum_probs=163.1
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 350 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~ 350 (1293)
+.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..
T Consensus 6 ~~i~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 6 PLLQLQNVGYLAG---DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred ceEEEeccEEeeC---CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 3699999999996 357999999999999999999999999999999999999999984321 1346
Q ss_pred EEEEcCCccccCccHHHHHccCCC-----CCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 000774 351 VAYVPQVSWIFNATVRDNILFGSA-----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 425 (1293)
Q Consensus 351 i~~v~Q~~~l~~~Tv~eni~~g~~-----~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral 425 (1293)
++|++|++.+|+.|++||+.++.. .+.++..+.++..++.+ +.......+||||||||++|||||
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHH
Confidence 999999999998899999986421 11233445555555532 123445679999999999999999
Q ss_pred hcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEe-CCeEEEecChH
Q 000774 426 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVH-EGMVKEEGTFE 494 (1293)
Q Consensus 426 ~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~-~G~i~~~g~~~ 494 (1293)
+.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||++++++.||++++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999876655433 4889999999999998899999995 67777788775
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=328.43 Aligned_cols=191 Identities=21% Similarity=0.377 Sum_probs=158.4
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-----------ecCcEEE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 353 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-----------~~~~i~~ 353 (1293)
|+++|++|.|+. +++|+|+||++++| +++|+||||||||||+++|+|+++|++|.... .++.++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 478999999963 57999999999999 99999999999999999999999999984321 1346999
Q ss_pred EcCCccccC-ccHHHHHccCC---CCC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 000774 354 VPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 425 (1293)
Q Consensus 354 v~Q~~~l~~-~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral 425 (1293)
++|++.+|. .||+||+.+.. ..+ .+++.++++..++.+..+. ...+||||||||++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHHHHHHH
Confidence 999999885 59999997631 111 2345566677776554332 3358999999999999999
Q ss_pred hcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEec
Q 000774 426 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 491 (1293)
Q Consensus 426 ~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 491 (1293)
+.+|+++||||||++||+.+.+++.+.+.+. .+++|+|+|||+++++.. +||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSEL-GEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999998866544 346999999999999864 8999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=327.21 Aligned_cols=191 Identities=26% Similarity=0.458 Sum_probs=158.6
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 354 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------~~~~i~~v 354 (1293)
|+++|++++|++ +. .|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..++|+
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 478999999963 22 3999999999999999999999999999999999999984321 12359999
Q ss_pred cCCccccC-ccHHHHHccCCC--C-----CHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhh
Q 000774 355 PQVSWIFN-ATVRDNILFGSA--F-----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 426 (1293)
Q Consensus 355 ~Q~~~l~~-~Tv~eni~~g~~--~-----~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~ 426 (1293)
+|++.+|. .|++||+.++.. . +++++.++++..++.+..+..+ .+||||||||++|||||+
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 99999885 599999987532 1 1234566777777765555443 489999999999999999
Q ss_pred cCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEeCCeEEEec
Q 000774 427 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 491 (1293)
Q Consensus 427 ~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 491 (1293)
.+|+++||||||++||+.+.+.+.+.+.+... .++|+|++||+++++.. ||++++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999886655433 48999999999999865 8999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=333.85 Aligned_cols=200 Identities=21% Similarity=0.357 Sum_probs=164.9
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 350 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~~~ 350 (1293)
.|+++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.... .+..
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 4889999999962 57999999999999999999999999999999999999999984221 1235
Q ss_pred EEEEcCCccccC-ccHHHHHccCCCC---------------CHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChH
Q 000774 351 VAYVPQVSWIFN-ATVRDNILFGSAF---------------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 414 (1293)
Q Consensus 351 i~~v~Q~~~l~~-~Tv~eni~~g~~~---------------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 414 (1293)
++|++|++.+|. .||+||+.++... ..+++.+.++..++.+ .......+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHH
Confidence 999999999886 5999999875321 0122333444444332 234455789999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecCh
Q 000774 415 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 493 (1293)
Q Consensus 415 qkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 493 (1293)
||||++|||||+.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++++.. ||+|++|++|++++.|++
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL-AGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCH
Confidence 999999999999999999999999999999999998865543 447899999999999875 899999999999999999
Q ss_pred HHHhh
Q 000774 494 EDLSN 498 (1293)
Q Consensus 494 ~~l~~ 498 (1293)
+++..
T Consensus 227 ~~~~~ 231 (242)
T TIGR03411 227 DQVQA 231 (242)
T ss_pred HHHhc
Confidence 88764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=333.26 Aligned_cols=199 Identities=27% Similarity=0.477 Sum_probs=162.3
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------ecCcE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 351 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~~~i 351 (1293)
|+++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.... .+..+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYG---QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeC---CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 47899999996 357999999999999999999999999999999999999999984321 12359
Q ss_pred EEEcCCccccC-ccHHHHHccCCC-C--C-HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhh
Q 000774 352 AYVPQVSWIFN-ATVRDNILFGSA-F--E-PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 426 (1293)
Q Consensus 352 ~~v~Q~~~l~~-~Tv~eni~~g~~-~--~-~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~ 426 (1293)
+|++|++.+|. .|+.||+.++.. . . .+...++++..+. ..........+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999999885 599999987532 1 1 1122333333221 111234456789999999999999999
Q ss_pred cCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHH
Q 000774 427 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 496 (1293)
Q Consensus 427 ~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 496 (1293)
.+|+++||||||++||+.+.+++.+.+.+... .++|+|++||+++++.. ||+|+++++|++++.|+++++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999886665444 37999999999999885 899999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=336.52 Aligned_cols=201 Identities=26% Similarity=0.392 Sum_probs=166.5
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------------
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------------ 346 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------------ 346 (1293)
|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|....
T Consensus 1 i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeC---CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 47899999996 357999999999999999999999999999999999999999884211
Q ss_pred -------ecCcEEEEcCCcccc-CccHHHHHccCC----CCCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCC
Q 000774 347 -------IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 410 (1293)
Q Consensus 347 -------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~ 410 (1293)
.+..++|++|++.++ ..|+.||+.++. .... +++.+.++..++.+..+ ....+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-----------HMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-----------cChhh
Confidence 134699999999887 589999998742 1111 23445555555544333 34468
Q ss_pred CChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEeCCeEE
Q 000774 411 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVK 488 (1293)
Q Consensus 411 LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~ 488 (1293)
||||||||++|||||+.+|+++||||||++||+.+.+++.+.+.+...+ |+|+|+|||+++.+. .||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999998866554443 899999999999985 58999999999999
Q ss_pred EecChHHHhhc
Q 000774 489 EEGTFEDLSNN 499 (1293)
Q Consensus 489 ~~g~~~~l~~~ 499 (1293)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999888654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=337.89 Aligned_cols=206 Identities=25% Similarity=0.382 Sum_probs=168.2
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CCCCcee-----------
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAV----------- 346 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~-----~~g~~~~----------- 346 (1293)
+.|+++|+++.|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|....
T Consensus 11 ~~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 4699999999996 35799999999999999999999999999999999999975 6773211
Q ss_pred ---ecCcEEEEcCCccccCccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHH
Q 000774 347 ---IRGTVAYVPQVSWIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 416 (1293)
Q Consensus 347 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqk 416 (1293)
.+..++|++|++.+|..|++||+.++.. .+. ++..++++.+++...+. ........+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHH
Confidence 2346999999999888999999987521 222 22344555555532211 123455679999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHH
Q 000774 417 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 495 (1293)
Q Consensus 417 qRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 495 (1293)
||++|||||+.+|+++||||||++||+.+.+++.+.+... .+++|+|+|||+++++.. ||+|++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL-KKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999998765544 457999999999999864 89999999999999999998
Q ss_pred Hhhc
Q 000774 496 LSNN 499 (1293)
Q Consensus 496 l~~~ 499 (1293)
+..+
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 8654
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=330.09 Aligned_cols=190 Identities=26% Similarity=0.420 Sum_probs=157.5
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee---------------ecC
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 349 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------~~~ 349 (1293)
++++|++++|+. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .+.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPN--GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 468999999963 257999999999999999999999999999999999999999884311 124
Q ss_pred cEEEEcCCccccC-ccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000774 350 TVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 421 (1293)
Q Consensus 350 ~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRial 421 (1293)
.++|++|++.+|. .|++||+.++.. .+ .+++.++++..++.+..+.. ..+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-----------PAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHH
Confidence 5999999998875 699999987521 11 12445566666665544433 35899999999999
Q ss_pred HHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeE
Q 000774 422 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 487 (1293)
Q Consensus 422 Aral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i 487 (1293)
||||+.+|+++||||||++||+.+.+++.+.+.+...+|+|+|+|||+++.+.. ||++++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999988766544568999999999999875 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=334.50 Aligned_cols=201 Identities=29% Similarity=0.432 Sum_probs=167.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 351 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i 351 (1293)
.|+++|+++.|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.... .+..+
T Consensus 2 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLG---GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 478999999996 357999999999999999999999999999999999999999984321 12459
Q ss_pred EEEcCCccc-cCccHHHHHccCCC-C------CHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000774 352 AYVPQVSWI-FNATVRDNILFGSA-F------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 423 (1293)
Q Consensus 352 ~~v~Q~~~l-~~~Tv~eni~~g~~-~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAr 423 (1293)
+|++|++.+ +..||+||+.++.. . ..++..++++..++.+..+ ....+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHH
Confidence 999999987 67899999987532 1 1223455666666654333 234689999999999999
Q ss_pred Hhh------cCCCEEEEeCcccCcCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHH
Q 000774 424 AVY------SNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 495 (1293)
Q Consensus 424 al~------~~~~illLDEpts~LD~~~~~~i~~~l~~~~-~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 495 (1293)
||+ .+|+++||||||++||+.+.+.+.+.+.+.. .+|+|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 5999999999999999999999988665544 45899999999999987 589999999999999999988
Q ss_pred Hhh
Q 000774 496 LSN 498 (1293)
Q Consensus 496 l~~ 498 (1293)
+.+
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 765
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=335.53 Aligned_cols=202 Identities=21% Similarity=0.361 Sum_probs=165.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 350 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~~~ 350 (1293)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .+..
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 589999999996 357999999999999999999999999999999999999999984221 1234
Q ss_pred EEEEcCCccccC-ccHHHHHccCCCC----------------C---H---HHHHHHHHHcCChhHHhcCCCCCcccccCC
Q 000774 351 VAYVPQVSWIFN-ATVRDNILFGSAF----------------E---P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGER 407 (1293)
Q Consensus 351 i~~v~Q~~~l~~-~Tv~eni~~g~~~----------------~---~---~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~ 407 (1293)
++|++|++.++. .|++||+.++... . . +++.+.++..++. ...+..
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-----------EHANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-----------hhhhCC
Confidence 899999999885 6999999875210 0 0 1122223333332 234456
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhh-CCeEEEEeCC
Q 000774 408 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEG 485 (1293)
Q Consensus 408 g~~LSGGqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G 485 (1293)
..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.+.+...+ |+|+|++||+++.+.. ||++++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 6799999999999999999999999999999999999999998866654444 7899999999999865 8999999999
Q ss_pred eEEEecChHHHhhc
Q 000774 486 MVKEEGTFEDLSNN 499 (1293)
Q Consensus 486 ~i~~~g~~~~l~~~ 499 (1293)
++++.|+++++.+.
T Consensus 231 ~i~~~~~~~~~~~~ 244 (255)
T PRK11300 231 TPLANGTPEEIRNN 244 (255)
T ss_pred eEEecCCHHHHhhC
Confidence 99999999887643
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=349.42 Aligned_cols=189 Identities=30% Similarity=0.424 Sum_probs=160.2
Q ss_pred CCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCceee--------------------cCcEEEEcCCcc
Q 000774 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------------RGTVAYVPQVSW 359 (1293)
Q Consensus 300 ~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~~--------------------~~~i~~v~Q~~~ 359 (1293)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|....- +..|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 568999999999999999999999999999999999999998843110 136999999999
Q ss_pred ccC-ccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCE
Q 000774 360 IFN-ATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 431 (1293)
Q Consensus 360 l~~-~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~i 431 (1293)
+|. .||+||+.++.. .+. ++..++++..++.+..+..+ .+||||||||++|||||+.+|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 985 899999998632 121 34456677777765544433 58999999999999999999999
Q ss_pred EEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHHHhhc
Q 000774 432 FIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 432 llLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
|||||||++||+.+++.+.+.+.+... .++|+|+|||+++++. .+|||++|++|++++.|+++++..+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999999987766544 3899999999999975 5899999999999999999999765
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=337.46 Aligned_cols=206 Identities=26% Similarity=0.390 Sum_probs=167.2
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC--C---CCCCce------------
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP--P---VSDASA------------ 345 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~--~---~~g~~~------------ 345 (1293)
+.|+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|...
T Consensus 11 ~~l~i~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 11 EVYQINGMNLWYG---QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred ceEEEeeEEEEEC---CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 4699999999996 3579999999999999999999999999999999999987 3 466321
Q ss_pred --eecCcEEEEcCCccccCccHHHHHccCCC----CCHH----HHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHH
Q 000774 346 --VIRGTVAYVPQVSWIFNATVRDNILFGSA----FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 415 (1293)
Q Consensus 346 --~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGq 415 (1293)
..++.|+|++|++.+|..|++||+.++.. .+.+ +..++++..++.+.+. +.+...+.+|||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq 160 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQ 160 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHH
Confidence 11346999999999988899999987532 1111 2334455555543321 12345667999999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChH
Q 000774 416 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 494 (1293)
Q Consensus 416 kqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 494 (1293)
|||++|||||+.+|+++||||||++||+.+...+.+.+.. ..+++|+|+|||+++.+. .||++++|++|++++.|+++
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK-LKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH-HhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999876554 345789999999999986 48999999999999999999
Q ss_pred HHhhc
Q 000774 495 DLSNN 499 (1293)
Q Consensus 495 ~l~~~ 499 (1293)
++..+
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 88654
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=324.67 Aligned_cols=193 Identities=25% Similarity=0.321 Sum_probs=162.3
Q ss_pred EEEEEEEEEecCCCCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCCCcceEEECCeecCCCChHHHhhhceE
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
++++|+++.|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .. .|+.++|
T Consensus 3 l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACHY 77 (207)
T ss_pred EEEEeEEEEECCe--EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcEE
Confidence 7899999999753 69999999999999999999999999999999999999999999999998752 22 7888999
Q ss_pred Eccccccc-cccHhhhcCCCC---CCCHHHHHHHHHHhhHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000774 989 IPQSPVLF-SGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064 (1293)
Q Consensus 989 v~Q~~~lf-~~ti~~nl~~~~---~~~~~~~~~~l~~~~l~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 1064 (1293)
++|++.++ ..|+++|+.+.. ...++++.++++..++.+ .......+||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-----------LAHLPFGYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-----------HHcCChhhcCHHHHHHHHHHHHHhcCC
Confidence 99988776 469999986422 122334555555555433 233344679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCcchhhccCEEEEEeC
Q 000774 1065 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDS 1118 (1293)
Q Consensus 1065 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~ 1118 (1293)
++|||||||++||+.+.+.+++.|++.. +++|+|++||+++++.. |+++-++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999998854 47899999999999987 99987744
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=328.80 Aligned_cols=189 Identities=33% Similarity=0.548 Sum_probs=154.8
Q ss_pred EEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee------------ecCcEEE
Q 000774 286 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 353 (1293)
Q Consensus 286 ~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i~~ 353 (1293)
+++|++++|++ .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .+..|+|
T Consensus 1 ~~~~l~~~~~~-~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPD-GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCC-CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 36899999963 1257999999999999999999999999999999999999999984321 1246999
Q ss_pred EcCCcc--ccCccHHHHHccCCC---CCH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000774 354 VPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 424 (1293)
Q Consensus 354 v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAra 424 (1293)
++|++. +++.|++||+.++.. .+. ++..+.++..++.+..+ .....||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHH
Confidence 999984 568899999987521 121 23444566666554433 3346899999999999999
Q ss_pred hhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCe
Q 000774 425 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 486 (1293)
Q Consensus 425 l~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~ 486 (1293)
|+.+|+++||||||++||+.+.+++.+.+.+...+|+|+|++||+++++.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999998766554458999999999999986 89999999884
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=327.82 Aligned_cols=200 Identities=25% Similarity=0.426 Sum_probs=167.7
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 354 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~----------~~~~i~~v 354 (1293)
++++|++++|+. .+ .|+||+|++||+++|+||||||||||+++|+|+++|++|.... .+..++|+
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 789999999962 22 3999999999999999999999999999999999999984321 12359999
Q ss_pred cCCccccC-ccHHHHHccCCC--C--C---HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhh
Q 000774 355 PQVSWIFN-ATVRDNILFGSA--F--E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 426 (1293)
Q Consensus 355 ~Q~~~l~~-~Tv~eni~~g~~--~--~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~ 426 (1293)
+|++.++. .|+.||+.++.. . . .+++.++++..++.+.++..+ ..||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 99998885 599999987521 1 1 234566777777776655544 489999999999999999
Q ss_pred cCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhhcc
Q 000774 427 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 500 (1293)
Q Consensus 427 ~~~~illLDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 500 (1293)
.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+++++....
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 99999999999999999999999886655443 38899999999999875 8999999999999999999887654
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=336.88 Aligned_cols=207 Identities=23% Similarity=0.343 Sum_probs=167.8
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCCcee----------
Q 000774 282 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV---------- 346 (1293)
Q Consensus 282 ~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~-----~~~g~~~~---------- 346 (1293)
...|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|....
T Consensus 11 ~~~l~i~nl~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 11 NIIISLQNVTISYG---TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CceEEEEeEEEEEC---CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 34699999999996 3579999999999999999999999999999999999987 57773211
Q ss_pred ----ecCcEEEEcCCccccCccHHHHHccCCCC---C---HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHH
Q 000774 347 ----IRGTVAYVPQVSWIFNATVRDNILFGSAF---E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 416 (1293)
Q Consensus 347 ----~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~---~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqk 416 (1293)
.+..|+|++|++.+|..||+||+.++... . +++..++++.+++...+. ........+||||||
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 160 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQ 160 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHH
Confidence 12469999999999878999999876421 1 123444555555432221 223455678999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeC-----------
Q 000774 417 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHE----------- 484 (1293)
Q Consensus 417 qRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~----------- 484 (1293)
||++|||||+.+|++|||||||++||+.+.+++.+.+.+. .+++|+|++||+++++. .||++++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL-KKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 9999999999999999999999999999999998865443 45789999999999886 5899999996
Q ss_pred CeEEEecChHHHhhc
Q 000774 485 GMVKEEGTFEDLSNN 499 (1293)
Q Consensus 485 G~i~~~g~~~~l~~~ 499 (1293)
|++++.|+.+++.+.
T Consensus 240 g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 240 GYLVEFNETKKIFNS 254 (269)
T ss_pred ceEEEeCCHHHHHhC
Confidence 678999999988654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=370.64 Aligned_cols=220 Identities=25% Similarity=0.420 Sum_probs=177.6
Q ss_pred cEEEEEEEEEecCC--CCCceeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhcCCCC-----CcceEEECCeecCCCChH
Q 000774 908 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLM 980 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~~~~ 980 (1293)
.++++|++++|++. ..++|+|+||+|.+||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 38999999999631 23699999999999999999999999999999999999997 799999999999776654
Q ss_pred H---Hh-hhceEEccccc--ccc-ccHhhhcCCC----CCCCHHHHHHHHHHhhHHHHHHHccCCcch---hhhcCCCCC
Q 000774 981 D---LR-KILGIIPQSPV--LFS-GTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDA---QVSEAGENF 1046 (1293)
Q Consensus 981 ~---~r-~~i~~v~Q~~~--lf~-~ti~~nl~~~----~~~~~~~~~~~l~~~~l~~~i~~lp~gl~~---~~~~~~~~L 1046 (1293)
. .| ++|||+||++. ++. .|+++|+... ......+.. ..+.+.++.+ |++. .......+|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAAR-----GEILNCLDRV--GIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChHHHHhhCCccc
Confidence 3 33 57999999985 444 4888887421 111111111 1122333332 3322 245567889
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCcchhhc-cCEEEEEeCCeEee
Q 000774 1047 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1123 (1293)
Q Consensus 1047 SgGqkqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 1123 (1293)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+||||++.+.. ||||++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999864 37899999999999876 99999999999999
Q ss_pred ecChhhhhhcC
Q 000774 1124 YDTPEELLSNE 1134 (1293)
Q Consensus 1124 ~g~~~el~~~~ 1134 (1293)
.|+++++....
T Consensus 238 ~g~~~~~~~~~ 248 (529)
T PRK15134 238 QNRAATLFSAP 248 (529)
T ss_pred eCCHHHHhhCC
Confidence 99999987543
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=335.31 Aligned_cols=205 Identities=27% Similarity=0.380 Sum_probs=167.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----CCCce-------------
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASA------------- 345 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~-----~g~~~------------- 345 (1293)
.|+++|++|+|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|...
T Consensus 4 ~l~~~~l~~~~~---~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEEC---CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 589999999996 357999999999999999999999999999999999999987 36321
Q ss_pred -eecCcEEEEcCCccccCccHHHHHccCCCC---C-H----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHH
Q 000774 346 -VIRGTVAYVPQVSWIFNATVRDNILFGSAF---E-P----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 416 (1293)
Q Consensus 346 -~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~---~-~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqk 416 (1293)
..++.++|++|++.+|..|++||+.++... . . +.+.++++..++.+.+. +..+..+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 124569999999999888999999876321 1 1 22333344444433222 224566789999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHH
Q 000774 417 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 495 (1293)
Q Consensus 417 qRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 495 (1293)
||++|||||+.+|+++||||||++||+.+.+++.+.+... .+++|+|+|||+++.+.. ||++++|++|++++.|++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999998755443 468999999999999876 79999999999999999988
Q ss_pred Hhhc
Q 000774 496 LSNN 499 (1293)
Q Consensus 496 l~~~ 499 (1293)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 7654
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=336.93 Aligned_cols=207 Identities=25% Similarity=0.392 Sum_probs=169.6
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CCCCcee----------
Q 000774 282 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAV---------- 346 (1293)
Q Consensus 282 ~~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~-----~~g~~~~---------- 346 (1293)
.+.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|....
T Consensus 17 ~~~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEEC---CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 34799999999996 35799999999999999999999999999999999999975 7773211
Q ss_pred ----ecCcEEEEcCCccccCccHHHHHccCCC---C--C----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCCh
Q 000774 347 ----IRGTVAYVPQVSWIFNATVRDNILFGSA---F--E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 413 (1293)
Q Consensus 347 ----~~~~i~~v~Q~~~l~~~Tv~eni~~g~~---~--~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 413 (1293)
.+..++|++|++.+|..||.||+.++.. . . .+++.++++..++.+.+. +..+..+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 2346999999999988899999987521 1 1 123455666666644322 123455679999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecC
Q 000774 414 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGT 492 (1293)
Q Consensus 414 GqkqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~ 492 (1293)
|||||++|||||+.+|++|||||||++||+.+.+++.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-hcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999998765443 457899999999999864 79999999999999999
Q ss_pred hHHHhhc
Q 000774 493 FEDLSNN 499 (1293)
Q Consensus 493 ~~~l~~~ 499 (1293)
++++...
T Consensus 246 ~~~~~~~ 252 (267)
T PRK14235 246 TEKMFTN 252 (267)
T ss_pred HHHHHhC
Confidence 9887643
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=335.69 Aligned_cols=205 Identities=21% Similarity=0.368 Sum_probs=165.9
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC--CC---CCCCce-------------
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--PP---VSDASA------------- 345 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~--~~---~~g~~~------------- 345 (1293)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+. +| ++|...
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYN---KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 589999999996 357999999999999999999999999999999999985 36 366321
Q ss_pred -eecCcEEEEcCCccccCccHHHHHccCC---CC-CH----HHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHH
Q 000774 346 -VIRGTVAYVPQVSWIFNATVRDNILFGS---AF-EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 416 (1293)
Q Consensus 346 -~~~~~i~~v~Q~~~l~~~Tv~eni~~g~---~~-~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqk 416 (1293)
..+..++|++|++.+|+.|++||+.++. .. .. +++.++++.+++...+. +..+....+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 1234699999999999899999998652 11 11 22333455555433221 123456679999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChHH
Q 000774 417 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 495 (1293)
Q Consensus 417 qRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 495 (1293)
||++|||||+.+|++|||||||++||+.+.+++.+.+... .+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL-KDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH-hhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999998765443 45689999999999876 589999999999999999998
Q ss_pred Hhhc
Q 000774 496 LSNN 499 (1293)
Q Consensus 496 l~~~ 499 (1293)
+.+.
T Consensus 234 ~~~~ 237 (252)
T PRK14239 234 MFMN 237 (252)
T ss_pred HHhC
Confidence 8654
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=335.22 Aligned_cols=206 Identities=24% Similarity=0.351 Sum_probs=167.7
Q ss_pred CcEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcC---CCC--CCCCce------------
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE---LPP--VSDASA------------ 345 (1293)
Q Consensus 283 ~~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~---~~~--~~g~~~------------ 345 (1293)
+.++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+ ++| ++|...
T Consensus 2 ~~l~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14245 2 VKIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78 (250)
T ss_pred cEEEEEEEEEEEC---CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccccc
Confidence 3689999999996 35799999999999999999999999999999999997 454 366321
Q ss_pred --eecCcEEEEcCCccccCccHHHHHccCCC---C-C----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHH
Q 000774 346 --VIRGTVAYVPQVSWIFNATVRDNILFGSA---F-E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 415 (1293)
Q Consensus 346 --~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~---~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGq 415 (1293)
..++.|+|+||++.+|..|+.||+.++.. . . +++..++++.+++.+.+. +..+..+.+|||||
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14245 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQ 151 (250)
T ss_pred HHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHH
Confidence 11346999999999988899999987521 1 1 123445566666543332 12345667999999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEeCCeEEEecChH
Q 000774 416 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 494 (1293)
Q Consensus 416 kqRialAral~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 494 (1293)
|||++|||||+.+|+++||||||++||+.+.+++.+.+.+. .+++|+|+|||+++.+. .||++++|++|++++.|+++
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~ 230 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTK 230 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999998866554 46799999999999985 58999999999999999999
Q ss_pred HHhhc
Q 000774 495 DLSNN 499 (1293)
Q Consensus 495 ~l~~~ 499 (1293)
++.++
T Consensus 231 ~~~~~ 235 (250)
T PRK14245 231 KIFTN 235 (250)
T ss_pred HHhcC
Confidence 98654
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=344.48 Aligned_cols=201 Identities=23% Similarity=0.414 Sum_probs=168.1
Q ss_pred cEEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-----------ecCcEE
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 352 (1293)
Q Consensus 284 ~i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-----------~~~~i~ 352 (1293)
.++++|++++|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|.... .++.+|
T Consensus 2 ~l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceE
Confidence 378999999996 357999999999999999999999999999999999999999984321 234699
Q ss_pred EEcCCccccC-ccHHHHHccCCC---CC----HHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000774 353 YVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 424 (1293)
Q Consensus 353 ~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAra 424 (1293)
|+||++.++. .|+.||+.+... .. .++..++++..++.+.. ......||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHH
Confidence 9999999874 599999975321 12 23445556666655443 23456899999999999999
Q ss_pred hhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEeCCeEEEecChHHHhhc
Q 000774 425 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 425 l~~~~~illLDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 499 (1293)
|+++|+++||||||++||+.+.+++++.+... .+++|+|++||+++.+.. ||||++|++|+++..|+.+++...
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-GKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999866544 457999999999998875 899999999999999999988653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=316.34 Aligned_cols=167 Identities=28% Similarity=0.582 Sum_probs=148.6
Q ss_pred EEEEeeEEEcCCCCCCCceeceeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCCCCcee-----------ecCcEEE
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 353 (1293)
Q Consensus 285 i~~~~~~~~y~~~~~~~~l~~isl~i~~G~~~~lvG~~GsGKSTLl~~l~g~~~~~~g~~~~-----------~~~~i~~ 353 (1293)
|+++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.... .+..++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4789999999642 247999999999999999999999999999999999999999984321 1345999
Q ss_pred EcCCccccCccHHHHHccCCCCCHHHHHHHHHHcCChhHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhhcCCCEEE
Q 000774 354 VPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 433 (1293)
Q Consensus 354 v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGqkqRialAral~~~~~ill 433 (1293)
++|++++|+.|++||+ ..+||||||||++||||++.+|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999989999997 35899999999999999999999999
Q ss_pred EeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEeCCeEEEec
Q 000774 434 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 491 (1293)
Q Consensus 434 LDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g 491 (1293)
|||||++||+.+.+.+++.+.+. .+++|+|++||++++++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999998866544 4589999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1293 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 4e-60 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-12 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 6e-42 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-04 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 7e-42 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-04 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-41 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 7e-41 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 5e-05 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 7e-41 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 6e-05 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-41 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-06 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-40 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-06 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 9e-40 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-04 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-39 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 5e-06 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 4e-39 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 3e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 9e-39 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-38 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-06 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 3e-38 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 6e-06 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 4e-38 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 6e-06 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 6e-38 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 6e-37 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 4e-05 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-33 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-33 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 6e-33 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-32 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-32 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 8e-30 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-32 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 8e-30 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 9e-32 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-31 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-29 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 6e-31 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 5e-30 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 6e-30 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 6e-30 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 6e-30 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 9e-30 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-29 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-29 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 9e-29 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 9e-29 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-27 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-22 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-21 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-21 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 6e-20 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-13 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-08 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 8e-13 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-05 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-12 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-12 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-12 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 6e-12 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-11 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-11 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-11 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 9e-11 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-04 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-10 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-10 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 6e-04 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-10 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 5e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 6e-10 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 3e-09 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 3e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 4e-09 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 4e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-09 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-05 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-08 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-08 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 5e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 8e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 4e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 5e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 5e-07 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 9e-07 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-06 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-06 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 8e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 7e-04 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 2e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-05 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 2e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 3e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 3e-04 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 8e-04 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 8e-04 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 8e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1293 | |||
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-162 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 9e-32 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-135 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-69 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-44 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-126 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 3e-34 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-126 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-36 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-123 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 7e-37 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-86 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-49 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-85 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 6e-54 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 3e-85 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-54 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 4e-76 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-44 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 2e-74 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 9e-55 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 7e-74 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 3e-36 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 6e-73 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 9e-39 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 4e-70 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-34 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-68 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-36 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 5e-68 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-36 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-56 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-34 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 6e-32 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-21 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 9e-30 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 3e-29 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-29 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 8e-23 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 8e-29 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 9e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 3e-28 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 5e-18 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-27 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-18 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-26 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-19 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-24 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-22 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 5e-23 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-22 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-20 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 7e-19 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-15 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-22 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-22 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-19 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 8e-18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-22 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-21 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-21 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 9e-19 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-16 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 3e-18 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 3e-18 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-11 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 3e-16 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 6e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-10 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 3e-15 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 6e-09 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-14 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-14 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 9e-08 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 5e-14 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 3e-12 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 7e-14 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 1e-13 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-13 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-11 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-13 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-10 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 5e-13 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 8e-13 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 7e-13 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-07 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 1e-12 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-12 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 6e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 3e-12 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 6e-11 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 4e-11 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 4e-04 |
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 489 bits (1260), Expect = e-162
Identities = 95/348 (27%), Positives = 182/348 (52%), Gaps = 9/348 (2%)
Query: 893 VIESN--RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKS 950
+IE++ + WPS G + +D+ +Y +L +SF+I P +VG++GRTG+GKS
Sbjct: 2 LIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKS 61
Query: 951 SMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH 1010
++L+ R++ E G I IDG L RK G+IPQ +FSGT R NLDP + H
Sbjct: 62 TLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH 120
Query: 1011 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 1070
SD ++W+ + L+ I + LD + + G S G +QL+ L+R++L ++KIL+LD
Sbjct: 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 1071 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1130
E +A +D T +I++T+++ F CT+++ R+ +++CD+ L+++ +V +YD+ EL
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240
Query: 1131 LSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQ 1190
F + N ++ A ++++ E + Q+ WL
Sbjct: 241 YHYPADRFVAGFIGSPKMNFLPVKVT---ATAIDQVQVELPMPNRQQVWLPVESRDVQVG 297
Query: 1191 YALAVSLTSSH---NDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHD 1235
+++ + H +D+ + +E + ++++ + + + +
Sbjct: 298 ANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQN 345
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 9e-32
Identities = 62/296 (20%), Positives = 119/296 (40%), Gaps = 23/296 (7%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 343
+++++ + L NI+ I G V ++G TG GK++L+SA L + +
Sbjct: 19 QMTVKDLTAKYTEGGN-AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR----LLNT 73
Query: 344 SAVI---------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS 388
I R +PQ +IF+ T R N+ +A K D
Sbjct: 74 EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVG 133
Query: 389 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 448
L+ ++ PG + + G +S G KQ + +AR+V S + + + D+P + LD +
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 449 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT-FEDLSNNGELFQKLM 507
+ R ++ + T +L ++ + + D+ +++ E V++ + E + F
Sbjct: 194 I-RRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 508 ENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQE 563
+ KM + + P N LP E S + S+ I+ E
Sbjct: 253 IGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVE-SRDVQVGANMSLGIRPE 307
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 447 bits (1151), Expect = e-135
Identities = 240/1200 (20%), Positives = 469/1200 (39%), Gaps = 117/1200 (9%)
Query: 18 FVGVVLGVLCEAQYFQNVM------RVGFRLRSTLVAAVFRKSLRITHEARKNFASGKIT 71
+ G+ GVL Y Q R ++R A+ + + + G++
Sbjct: 114 YTGIGAGVLI-VAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG-WFDVHD---VGELN 168
Query: 72 NLMTTDAEQLQQ--------VCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFM 123
+T D ++ + QA+ T + II + +L + L + +L
Sbjct: 169 TRLTDDVSKINEGIGDKIGMFFQAMATFFGG---FIIGFTRGW-KLTLVILAISPVLGLS 224
Query: 124 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDEL 183
+ T + L K + E+LAA+ V + + + N +
Sbjct: 225 A---GIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAK 281
Query: 184 SWFRKAQFLAACNSFILNSIPVLVTVVSF--GMFTLLGGDLTPARAFTSLSLFAVLRFPL 241
K A + + ++F G ++ + + + T + F +
Sbjct: 282 RLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSV 341
Query: 242 FMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP------AISIRNGYFSWD 295
I NA + + + + + I + SG + +N +FS+
Sbjct: 342 GQASPNIEAFANARGAAYEVFKIIDNKPSI---DSFSKSGHKPDNIQGNLEFKNIHFSYP 398
Query: 296 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAV---- 346
S+ E L +NL + G VA+VG +G GK++ + M P+ D +
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN 458
Query: 347 ---IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV--TSLQHD-LDLLPGGD 400
+R + V Q +F T+ +NI +G E ++ + +D + LP
Sbjct: 459 VRYLREIIGVVSQEPVLFATTIAENIRYGR--EDVTMDEIEKAVKEANAYDFIMKLPHQF 516
Query: 401 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 460
T +GERG +SGGQKQR+++ARA+ N + + D+ SALD V + G
Sbjct: 517 DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA-LDKAREG 575
Query: 461 KTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELF------QKLMENAG 511
+T +++ H LS V D I G++ E+G ++L ++ Q
Sbjct: 576 RTTIVIA---HRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIE 632
Query: 512 KMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVS 571
E + K++ + +D + ++ + +++ ++ K + + + S
Sbjct: 633 LGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPAS 692
Query: 572 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLS------YWTDQSSLKTHGPLF 625
F + K ++ + C + L+ + S S +
Sbjct: 693 FWRI--LKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNL 750
Query: 626 YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT--NPLGRI 683
++ ++ +L + + + KRL + S+LR + +F N G +
Sbjct: 751 FSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGAL 810
Query: 684 INRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW-------AIMPLLLL 736
R A D V + + Q ++ I+S + W AI+P++ +
Sbjct: 811 TTRLANDA----AQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAI 866
Query: 737 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKN 796
+ S +K + S A EA+ T+ + + + +S+
Sbjct: 867 AGVVEMKMLSGQ-ALKDKKELEGSGKIAT--EAIENFRTVVSLTREQKFETMYAQSLQIP 923
Query: 797 IRYTLVNMGANRWLAIRLEIVGGLMIWLTA-TFAV----VQNGSAENQEAFASTMGLLLS 851
R + I +M + A F V + ++
Sbjct: 924 YRNAMK---KAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFG 980
Query: 852 YALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSS--GSI 909
A+ + + + A + + + IE E I+S P+ G++
Sbjct: 981 -AMAVGQVSS----FAPDYAKATVSASHIIRIIEKTPE----IDSYSTQGLKPNMLEGNV 1031
Query: 910 KFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 967
+F VV Y RP +P VL GLS + + +VG +G GKS+++ L R + G +
Sbjct: 1032 QFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 968 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHL 1024
+DG +I + + LR LGI+ Q P+LF ++ N+ D S ++ A + A++
Sbjct: 1091 FLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANI 1150
Query: 1025 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1084
I + +V + G S GQ+Q ++++RAL+R+ IL+LDEAT+A+D ++ ++
Sbjct: 1151 HQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210
Query: 1085 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1144
Q+ + + + T ++IAHRL+TI + D I+++ +G+V E+ T ++LL+ +G + MV
Sbjct: 1211 QEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKG-IYFSMVSV 1269
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 255 bits (654), Expect = 1e-69
Identities = 143/716 (19%), Positives = 299/716 (41%), Gaps = 70/716 (9%)
Query: 538 VDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDAL--------------- 582
++ + + + + K+++ + VS + RY L
Sbjct: 1 MELEEDLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIH 60
Query: 583 GGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTI------YSLLSFG 636
G +++L+ V + + S ++ + + Y+ + G
Sbjct: 61 GVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAG 120
Query: 637 QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDR 696
++V + +++ ++ H+I+ + +F + +G + R D+ I+
Sbjct: 121 VLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINE 180
Query: 697 NVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW-------AIMPLLLLFYAAYLYYQSTAR 749
+ + MF Q ++TF I+ W AI P+L L + S+
Sbjct: 181 GIGDKIGMFF----QAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSF- 235
Query: 750 EVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW 809
K L + ++ A+ E L + T+ A+ + + ++++ R +
Sbjct: 236 TDKELHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEAKRL---GIKKAIT 290
Query: 810 LAIRLEIVGGLMIWLTATFAV--------VQNGSAENQEAFASTMGLLLSYALNITSLLT 861
I + G + + A++A+ V + + +L+ A ++
Sbjct: 291 ANISM---GAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIG-AFSVGQASP 346
Query: 862 AVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRY--R 919
+ A N+ A V I+ +S P G+++F+++ Y R
Sbjct: 347 NIEAFA----NARGAAYEVFKIIDNKPSIDSFSKSGHKPDN--IQGNLEFKNIHFSYPSR 400
Query: 920 PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 979
E+ +L GL+ + V +VG +G GKS+ + + R+ + G + IDG DI +
Sbjct: 401 KEVQ-ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINV 459
Query: 980 MDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQ 1038
LR+I+G++ Q PVLF+ T+ N+ E + ++ +A++ A+ D I + D
Sbjct: 460 RYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTL 519
Query: 1039 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 1098
V E G S GQ+Q ++++RAL+R KIL+LDEAT+A+D ++A++Q + + + T +
Sbjct: 520 VGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTI 579
Query: 1099 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVL 1158
+IAHRL+T+ + D I D G ++E +EL+ +G + K+V Q + +
Sbjct: 580 VIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKG-IYFKLVM------TQTAGNEIE 632
Query: 1159 GGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNN 1214
G K ++E +D + S + + + S+ H+ ++L ++ +
Sbjct: 633 LGNEACKSKDEIDNLDMSSK---DSGSSLIRRRSTRKSICGPHDQDRKLSTKEALD 685
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 3e-44
Identities = 110/549 (20%), Positives = 218/549 (39%), Gaps = 64/549 (11%)
Query: 17 IFVGVVLGVLCEAQYFQNVM--RVGFRLRSTLVAAVFRKSLR--ITHEARKNFASGKITN 72
+F+ + + + Q + G L L VF+ LR ++ +G +T
Sbjct: 754 LFLILGIISFI-TFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTT 812
Query: 73 LMTTDAEQLQ--------QVCQALHTLWSAPFRIIISLVLLYN-ELGVASLLGALLLVFM 123
+ DA Q++ + Q + L + IIISL+ Y +L + L ++
Sbjct: 813 RLANDAAQVKGATGSRLAVIFQNIANLGTG---IIISLI--YGWQLTLLLLAIVPIIAIA 867
Query: 124 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSK-VQNVRNDE 182
V+ ++S K+ L+ + K + E + V E F++ Q+++
Sbjct: 868 GVVEMKMLSGQALKDKKELEGSGK---IATEAIENFRTVVSLTREQKFETMYAQSLQIPY 924
Query: 183 LSWFRKAQFLAACNSFILNSIPVLVTVVSF--GMFTLLGGDLTPARAFTSLSLFAVLRFP 240
+ +KA SF ++ +F G + + +T S
Sbjct: 925 RNAMKKAHVFGITFSFT-QAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMA 983
Query: 241 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP------AISIRNGYFSW 294
+ + + A VS + + +I + T GL + F++
Sbjct: 984 VGQVSSFAPDYAKATVSASHIIRIIEKTPEI---DSYSTQGLKPNMLEGNVQFSGVVFNY 1040
Query: 295 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAV 346
++ P L ++L++ G +A+VG +G GK++++ + P++ + +
Sbjct: 1041 PTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQL 1100
Query: 347 ----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL---LPGG 399
+R + V Q +F+ ++ +NI +G YE+ + + LP
Sbjct: 1101 NVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDK 1160
Query: 400 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRG 456
T +G++G +SGGQKQR+++ARA+ + + D+ SALD + V D+
Sbjct: 1161 YNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE- 1219
Query: 457 ELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN-AGK 512
G+T +++ H LS + D I+++ G VKE GT + L ++ ++ AG
Sbjct: 1220 ---GRTCIVIA---HRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGA 1273
Query: 513 MEEYVEEKE 521
YV
Sbjct: 1274 KRSYVHHHH 1282
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 390 bits (1005), Expect = e-126
Identities = 82/277 (29%), Positives = 140/277 (50%), Gaps = 4/277 (1%)
Query: 254 ANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNG--YFSWDSKAERPTLLNINLDIP 311
V ++ + F L + S + FS S P L +IN I
Sbjct: 3 TEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIE 62
Query: 312 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILF 371
G L+A+ G TG GKTSL+ ++GEL P G +++ Q SWI T+++NI+
Sbjct: 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSE-GKIKHSGRISFCSQNSWIMPGTIKENII- 120
Query: 372 GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 431
G +++ RY I L+ D+ D +GE G+ +SGGQ+ R+S+ARAVY ++D+
Sbjct: 121 GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180
Query: 432 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 491
++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+++HEG G
Sbjct: 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG 240
Query: 492 TFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDN 528
TF +L N F + +++ E+ + +
Sbjct: 241 TFSELQNLRPDFSSKLMGCDSFDQFSAERRNSILTET 277
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 3e-34
Identities = 58/278 (20%), Positives = 114/278 (41%), Gaps = 24/278 (8%)
Query: 876 AVERVGNYIELPSEAPL--VIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTI 933
+E V + E ++N S+ F + L PVL ++F I
Sbjct: 6 VMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG----TPVLKDINFKI 61
Query: 934 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP 993
+ + G TGAGK+S+L + +E G+I G I+ Q+
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-RIS------------FCSQNS 108
Query: 994 VLFSGTVRFN-LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052
+ GT++ N + + + ++ L++ I + + + + E G S GQR
Sbjct: 109 WIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA 166
Query: 1053 LLSLSRALLRRSKILVLDEATAAVDVRT-DALIQKTIREEFKSCTMLIIAHRLNTIIDCD 1111
+SL+RA+ + + + +LD +DV T + + + + + T +++ ++ + D
Sbjct: 167 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKAD 226
Query: 1112 RILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 1149
+IL+L G Y T EL + FS + + +
Sbjct: 227 KILILHEGSSYFYGTFSELQNL-RPDFSSKLMGCDSFD 263
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 387 bits (997), Expect = e-126
Identities = 112/234 (47%), Positives = 159/234 (67%), Gaps = 4/234 (1%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 343
+I++RN F+W +++ PTL I IP G+LVA+VG G GK+SL+SA+L E+ V
Sbjct: 3 SITVRNATFTWA-RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE-G 60
Query: 344 SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 403
I+G+VAYVPQ +WI N ++R+NILFG E Y I +L DL++LP GD TE
Sbjct: 61 HVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE 120
Query: 404 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGK 461
IGE+GVN+SGGQKQRVS+ARAVYSN+D+++FDDPLSA+DAHVG+ +F+ I +G L K
Sbjct: 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNK 180
Query: 462 TRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEE 515
TR+LVT+ + +L QVD II++ G + E G++++L F + +
Sbjct: 181 TRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASHHH 234
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 2e-36
Identities = 59/250 (23%), Positives = 118/250 (47%), Gaps = 21/250 (8%)
Query: 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
SI + + PP L+G++F+IP V +VG+ G GKSS+L+ L ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 967 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN-LDPFSEHSDADL-WEALERAHL 1024
+ I G +A +PQ + + ++R N L F + ++ L
Sbjct: 62 VAIKG-SVA------------YVPQQAWIQNDSLRENIL--FGCQLEEPYYRSVIQACAL 106
Query: 1025 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DAL 1083
+ G ++ E G N S GQ+Q +SL+RA+ + I + D+ +AVD +
Sbjct: 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 166
Query: 1084 IQKTI--REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1141
+ I + K+ T +++ H ++ + D I+++ G++ E + +ELL+ +F++
Sbjct: 167 FENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEF 225
Query: 1142 VQSTGAANAQ 1151
+++ + +
Sbjct: 226 LRTYASHHHH 235
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 380 bits (979), Expect = e-123
Identities = 79/230 (34%), Positives = 131/230 (56%), Gaps = 4/230 (1%)
Query: 278 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 337
LT+ + + N W+ + P L +IN I G L+A+ G TG GKTSL+ ++GEL
Sbjct: 2 LTTT--EVVMENVTAFWE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58
Query: 338 PPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLP 397
P G +++ Q SWI T+++NI+FG +++ RY I L+ D+
Sbjct: 59 EPSE-GKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFA 117
Query: 398 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 457
D +GE G+ +SGGQ+ R+S+ARAVY ++D+++ D P LD +++F+ C+
Sbjct: 118 EKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 177
Query: 458 LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 507
++ KTR+LVT+++ L + D+I+++HEG GTF +L N F +
Sbjct: 178 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 7e-37
Identities = 55/241 (22%), Positives = 107/241 (44%), Gaps = 18/241 (7%)
Query: 905 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
++ + E+V + PVL ++F I + + G TGAGK+S+L + +E
Sbjct: 3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 965 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN-LDPFSEHSDADL-WEALERA 1022
G+I G I+ Q + GT++ N + F D ++
Sbjct: 63 GKIKHSG-RIS------------FCSQFSWIMPGTIKENII--FGVSYDEYRYRSVIKAC 107
Query: 1023 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-D 1081
L++ I + + + + E G S GQR +SL+RA+ + + + +LD +DV T
Sbjct: 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167
Query: 1082 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1141
+ + + + + T +++ ++ + D+IL+L G Y T EL + + SK+
Sbjct: 168 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
Query: 1142 V 1142
+
Sbjct: 228 M 228
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 292 bits (751), Expect = 1e-86
Identities = 125/570 (21%), Positives = 244/570 (42%), Gaps = 36/570 (6%)
Query: 586 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTL--- 642
+ + ++ + + + + Y D + ++ G L
Sbjct: 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIV 73
Query: 643 ------ANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDR 696
Y +S + + + + F+ N +G++I+R D+
Sbjct: 74 RPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKD 133
Query: 697 NVAVFVNMFMGQVSQLLSTFVLIGIVS-TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLD 755
+ + ++ ++ + ++L A+ Y + R++ R
Sbjct: 134 FILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY-VFFGRLRKLTRER 192
Query: 756 SITRSPVYAQFGEALNGLSTIRAY----KAYDRMADINGKSMDKNIRYTLVNMGANRWLA 811
S + V E + G+S ++++ N + + +++T N + +
Sbjct: 193 SQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAIN 252
Query: 812 IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 871
+I ++I + A A+ +GS T+G L ++ + L + RL +
Sbjct: 253 TVTDIGPIIVIGVGAYLAI--SGS--------ITVGTLAAFVGYLELLFGPLRRLVASFT 302
Query: 872 NSLNAV---ERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG 928
+ +RV +L E + P G I + V +Y P+L
Sbjct: 303 TLTQSFASMDRV---FQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKD 359
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988
++ +I + V VG +G GKS+++N + R ++ G+ILIDG +I F LR +G+
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 419
Query: 989 IPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1045
+ Q +LFS TV+ N+ P +D ++ EA + A+ D I G D +V E G
Sbjct: 420 VQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477
Query: 1046 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1105
S GQ+Q LS++R L IL+LDEAT+A+D+ ++++IQ+ + K T LI+AHRL+
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537
Query: 1106 TIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
TI D+I+++++G ++E T EL++ +G
Sbjct: 538 TITHADKIVVIENGHIVETGTHRELIAKQG 567
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 2e-49
Identities = 121/549 (22%), Positives = 222/549 (40%), Gaps = 72/549 (13%)
Query: 3 QDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVM------RVGFRLRSTLVAAVFRKSLR 56
A I + + + V ++ + + ++ + +R L + S R
Sbjct: 51 TTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSAR 110
Query: 57 ITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRIIISLVLLYNELGVASLL 115
+ G++ + + D EQ + L +W III+L +++ +
Sbjct: 111 FYANNQ----VGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMF----FLDVK 162
Query: 116 GALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMN----EILAAMDAVKCYAWENSF 171
L +F+FP + ++ + + + + E + + VK +A E++
Sbjct: 163 LTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNE 222
Query: 172 QSKVQNVRNDELSWFRKAQFLAA----CNSFILNSIPVLVTVVSFGMFTLLGGDLTPARA 227
+ L+ K A + + + P++V G + + G +T
Sbjct: 223 AKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIG--VGAYLAISGSITVGTL 280
Query: 228 FTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP---- 283
+ +L PL L T + + S+ R+ + + +E + N +
Sbjct: 281 AAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI--DEDYDIKNGVGAQPIEIKQG 338
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---- 339
I I + F ++ E P L +INL I G VA VG +G GK++LI+ L P
Sbjct: 339 RIDIDHVSFQYN-DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLIN-----LIPRFYD 392
Query: 340 VSDASAVI-------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 386
V+ +I R + V Q + +F+ TV++NIL G A E+ ++
Sbjct: 393 VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR--PTATDEEVVEA 450
Query: 387 TSLQHDLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 443
+ + D LP G TE+GERGV +SGGQKQR+S+AR +N + I D+ SALD
Sbjct: 451 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 510
Query: 444 HVGRQV---FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLS 497
+ D + +T ++V H LS + D+I+++ G + E GT +L
Sbjct: 511 ESESIIQEALDVLSK----DRTTLIVA---HRLSTITHADKIVVIENGHIVETGTHRELI 563
Query: 498 NNGELFQKL 506
++ L
Sbjct: 564 AKQGAYEHL 572
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 289 bits (743), Expect = 2e-85
Identities = 138/597 (23%), Positives = 255/597 (42%), Gaps = 50/597 (8%)
Query: 561 KQEERETGVVSFKVLSRY-KDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLK 619
E+ +FK L Y + GL V I L+ +T +S L D+
Sbjct: 2 SLHSDESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMIS---LLKPLLDEGFGN 58
Query: 620 THGPLFYNTIYSL--LSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT 677
+ + L F + L A+SY L S ++ + + + P+ FF
Sbjct: 59 AESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ 118
Query: 678 NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS----LWAIMPL 733
G +++R D ++ + V + S L+ ++ S L I+
Sbjct: 119 ESTGGLLSRI---TYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVA 175
Query: 734 LLLFYAAYLYYQSTAREVKRLDSITR------SPVYAQFGEALNGLSTIRAY----KAYD 783
++ +A KR I+R V + + L G + +Y
Sbjct: 176 PVVAFAISFV-------SKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERK 228
Query: 784 RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 843
R ++ + ++ A+ + + + +++L A+ ++
Sbjct: 229 RFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFL-ASVDSIRA---------E 278
Query: 844 STMGLLLSYALNITSLLTAVLRLASLAEN---SLNAVERVGNYIELPSEAPLVIESNRPP 900
T G + L+ + L S+ + A + + ++L +E
Sbjct: 279 LTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD---NGKYEA 335
Query: 901 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 960
+G + +DV Y+ + P L +SF+IP V +VGR+G+GKS++ N R
Sbjct: 336 E--RVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393
Query: 961 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN--LDPFSEHSDADLWEA 1018
+++ G I +DG D+ + L +LR+ ++ Q+ LF+ T+ N E++ + +A
Sbjct: 394 DVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQA 453
Query: 1019 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1078
+AH + I GLD + E G + S GQRQ ++++RALLR + +L+LDEAT+A+D
Sbjct: 454 ARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDT 513
Query: 1079 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
++ IQ + E K+ T+L+IAHRL+TI D IL++D G ++E +LL+ +G
Sbjct: 514 ESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDG 570
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 6e-54
Identities = 113/539 (20%), Positives = 216/539 (40%), Gaps = 62/539 (11%)
Query: 6 PAWIGYIYAFSIFVGVVLGVLCEAQYFQNVM--RVGFRLRSTLVAAVFRKSLRITHEARK 63
++ + + + V G+ + + + V + + +F + +
Sbjct: 61 SNFLRILPFMILGLMFVRGL---SGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFD 117
Query: 64 NFASGKITNLMTTDAEQLQQ-VCQALHTLWSAPFRIIISL-VLLYNELGVASLLGALLLV 121
++G + + +T D+EQ+ +AL ++ II L ++ +N S +L+L+
Sbjct: 118 QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWN-----SWQLSLVLI 172
Query: 122 FMFPVQTFIIS----RMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQN 177
+ PV F IS R +K+++ ++L V Y + + +
Sbjct: 173 VVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDK 232
Query: 178 VRNDELSWFRKAQFLAACNSFILNSIP--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFA 235
V N K + ++ I L V+ + +LTP S
Sbjct: 233 VSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMF 292
Query: 236 VLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWD 295
L PL L ++ ++ + + + + E + + +++ F++
Sbjct: 293 GLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQ 352
Query: 296 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP---------------PV 340
K E+P L +++ IP G VA+VG +G GK+++ + L V
Sbjct: 353 GK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIAN--L--FTRFYDVDSGSICLDGHDV 407
Query: 341 SDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE-----KAIDVTSLQHD-L 393
D +R A V Q +FN T+ +NI + + E R + + + +
Sbjct: 408 RDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHA----MEFI 463
Query: 394 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---F 450
+ +P G T IGE G ++SGGQ+QRV++ARA+ ++ V I D+ SALD R +
Sbjct: 464 ENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL 523
Query: 451 DRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKL 506
D + KT +++ H LS + D I++V EG + E G DL + +L
Sbjct: 524 DELQK----NKTVLVIA---HRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 289 bits (741), Expect = 3e-85
Identities = 134/597 (22%), Positives = 257/597 (43%), Gaps = 50/597 (8%)
Query: 561 KQEERETGVVSFKVLSRY-KDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLK 619
++ + +F+ L GL V I L+ ++T +S L D K
Sbjct: 2 HNDKDLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLS---LLKPLLDDGFGK 58
Query: 620 THGPLFYNTIYSL--LSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT 677
T + + L + + + +SY + S + + ++ P+ FF
Sbjct: 59 TDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK 118
Query: 678 NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS----LWAIMPL 733
G +++R D ++ + + V + S L ++ S + ++
Sbjct: 119 QSTGTLLSRI---TYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLA 175
Query: 734 LLLFYAAYLYYQSTAREVKRLDSITR------SPVYAQFGEALNGLSTIRAY----KAYD 783
++ A + KR SI++ V + L G + +
Sbjct: 176 PIVSIAIRVVS-------KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETK 228
Query: 784 RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 843
R ++ K + ++ + ++ + + + +++ A+F V + +
Sbjct: 229 RFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYA-ASFPSVMD---------S 278
Query: 844 STMGLLLSYALNITSLLTAVLRLASLAEN---SLNAVERVGNYIELPSEAPLVIESNRPP 900
T G + ++ +L+ + L ++ + A + + ++ E E R
Sbjct: 279 LTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE---KDEGKRVI 335
Query: 901 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 960
++G ++F +V Y P L ++ IP V +VGR+G+GKS++ + + R
Sbjct: 336 D--RATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393
Query: 961 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN--LDPFSEHSDADLWEA 1018
+++ G IL+DG D+ ++ L LR + ++ Q+ LF+ TV N E+S + EA
Sbjct: 394 DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA 453
Query: 1019 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1078
A+ D I + GLD + E G S GQRQ ++++RALLR S IL+LDEAT+A+D
Sbjct: 454 ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 1079 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
++ IQ + E K+ T L+IAHRL+TI D I++++ G ++E T ELL+ G
Sbjct: 514 ESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG 570
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 1e-54
Identities = 119/535 (22%), Positives = 223/535 (41%), Gaps = 54/535 (10%)
Query: 6 PAWIGYIYAFSIFVGVVLGVLCEAQYFQN--VMRVGFRLRSTLVAAVFRKSLRITHEARK 63
+ + ++ I + ++ G+ Y + + V ++ T+ +F + +
Sbjct: 61 RSVLLWMPLVVIGLMILRGI---TSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFD 117
Query: 64 NFASGKITNLMTTDAEQLQQ-VCQALHTLWSAPFRIIISL-VLLYNELGVASLLGALLLV 121
++G + + +T D+EQ+ AL T+ II ++ Y S +++LV
Sbjct: 118 KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY-----SWQLSIILV 172
Query: 122 FMFPVQTFIIS----RMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQN 177
+ P+ + I R + ++K + ++L V + + +
Sbjct: 173 VLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK 232
Query: 178 VRNDELSWFRKAQFLAACNSFILNSIP--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFA 235
V N K ++ + I+ I L V+ F + LT S
Sbjct: 233 VSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMI 292
Query: 236 VLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWD 295
L PL L N+ Q + + + L +E++ + + RN F++
Sbjct: 293 ALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYP 352
Query: 296 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP---------------PV 340
+ E P L NINL IP G VA+VG +G GK+++ S L + +
Sbjct: 353 GR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS--L--ITRFYDIDEGHILMDGHDL 407
Query: 341 SDAS-AVIRGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLP 397
+ + A +R VA V Q +FN TV +NI + + + E+A + ++ +
Sbjct: 408 REYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMD 467
Query: 398 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCI 454
G T IGE GV +SGGQ+QR+++ARA+ +S + I D+ SALD R + D
Sbjct: 468 NGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527
Query: 455 RGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKL 506
+ +T +++ H LS + D I++V +G++ E GT +L ++ +L
Sbjct: 528 K----NRTSLVIA---HRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 575
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 258 bits (661), Expect = 2e-74
Identities = 129/527 (24%), Positives = 233/527 (44%), Gaps = 55/527 (10%)
Query: 632 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDL 691
+++ + + + + +S L + +L + + +I R D+
Sbjct: 71 IVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDV 130
Query: 692 GDIDRNVAVFVNMFMGQVSQLLSTFVLIG-------IVSTMSL--WAIMPLL-----LLF 737
+ V M + V + + + +G I +S ++P + L
Sbjct: 131 ----TQLQNLVMMLLRIV--VRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLT 184
Query: 738 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNI 797
++ ++ + R E L G +R +A+ R N N
Sbjct: 185 KKGNPLFRKIQESTDEVNRVVR--------ENLLG---VRVVRAFRREEYENENFRKANE 233
Query: 798 RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGL-----LLSY 852
+ A + L + + I AV+ G + M + +Y
Sbjct: 234 SLRRSIISAFSLIVFALPLF--IFIVNMGMIAVLWFGG---VLVRNNQMEIGSIMAYTNY 288
Query: 853 ALNIT---SLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSI 909
+ I ++ +L A S +RV E+ +E P + E++ GS+
Sbjct: 289 LMQIMFSLMMIGNILNFIVRASASA---KRVL---EVLNEKPAIEEADNALALPNVEGSV 342
Query: 910 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 969
FE+V RY PVL G++F++ P V ++G TG+GKS+++N + R+++ ERGR+ +
Sbjct: 343 SFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402
Query: 970 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKD 1026
D D+ L DLR + +PQ VLFSGT++ NL + +D ++ EA + A + D
Sbjct: 403 DELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHD 460
Query: 1027 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1086
I G D++V G NFS GQ+Q LS++RAL+++ K+L+LD+ T++VD T+ I
Sbjct: 461 FIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD 520
Query: 1087 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1133
++ K CT II ++ T + D+IL+L G+V + T +ELL +
Sbjct: 521 GLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 200 bits (512), Expect = 9e-55
Identities = 121/532 (22%), Positives = 229/532 (43%), Gaps = 54/532 (10%)
Query: 9 IGYIYAFSI------FVGVVLGVLCEAQYF--QNVMRVGFRLRSTLVAAVFRKSLRITHE 60
+ I +G V G+ C F G LR +FRK L +
Sbjct: 59 FSLVLKTGILMLIVALIGAVGGIGC--TVFASYASQNFGADLRR----DLFRKVLSFSIS 112
Query: 61 ARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGALL 119
F + + +T D QLQ + L + AP + +V+ + S + L
Sbjct: 113 NVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFL 172
Query: 120 LVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVR 179
+ + + ++ + L ++ + TD+ ++ E L + V+ + E +
Sbjct: 173 IPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKA- 231
Query: 180 NDEL-SWFRKAQFLAACNS----FILNSIPVLVTVVSFGMFTLLGGDLTPAR--AFTS-- 230
N+ L A L FI+N ++ V+ FG + + A+T+
Sbjct: 232 NESLRRSIISAFSLIVFALPLFIFIVNM--GMIAVLWFGGVLVRNNQMEIGSIMAYTNYL 289
Query: 231 -LSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGL--PAISI 287
+F+++ M+ N++ +V A+ S KR+ E L + I + L ++S
Sbjct: 290 MQIMFSLM-----MIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSF 344
Query: 288 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS-------AMLGEL--- 337
N F + + P L +N + GSLVA++G TG GK++L++ G +
Sbjct: 345 ENVEFRY-FENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVD 403
Query: 338 -PPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSL-QHD-- 392
V +RG ++ VPQ + +F+ T+++N+ +G E A ++ ++ + Q
Sbjct: 404 ELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR--EDATDDEIVEAAKIAQIHDF 461
Query: 393 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 452
+ LP G + + G N SGGQKQR+S+ARA+ V I DD S++D +++
Sbjct: 462 IISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRIL-D 520
Query: 453 CIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQ 504
++ G T ++T ++ D+I+++HEG V GT ++L + + ++
Sbjct: 521 GLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYR 572
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 7e-74
Identities = 149/591 (25%), Positives = 258/591 (43%), Gaps = 65/591 (10%)
Query: 572 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYS 631
L + + ++++ + ++ L V S + D + L +
Sbjct: 29 LGYLRPHT------FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLI 82
Query: 632 LLSF--GQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAK 689
L + L+ ++ S RL + + R P+ FF P G II+R
Sbjct: 83 LGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRV-- 140
Query: 690 DLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTM-------SLWAIMPLLLLFYAAYL 742
+ D+D N+ + + Q L G V M SL + + L +
Sbjct: 141 -INDVD-NINNVLGNSIIQF--FSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQI 196
Query: 743 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAY----KAYDRMADINGK---SMDK 795
T + + E ++GL+ I+ + K ++ +N K
Sbjct: 197 VSSQTRKYFYEN-QRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTK 255
Query: 796 NIRYT-----LVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLL- 849
++ L+NM N A+ + GG + T+G +
Sbjct: 256 AQIFSGVLPPLMNMVNNLGFAL-ISGFGGWL---------ALKDII--------TVGTIA 297
Query: 850 --LSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG 907
+ Y+ T L + ++ + +L + ER+ ++L E + + G
Sbjct: 298 TFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD---DPDAVELR-EVRG 353
Query: 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 967
I+F++V Y + PVL ++F I P KV +VG TG+GK++++N L R +++RG+I
Sbjct: 354 EIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412
Query: 968 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHL 1024
L+DG DI K LR +GI+ Q +LFS TV+ NL +P +D ++ EA + H
Sbjct: 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP--GATDEEIKEAAKLTHS 470
Query: 1025 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1084
I+ G + +++ GE+ S GQRQLL+++RA L KIL+LDEAT+ VD +T+ I
Sbjct: 471 DHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530
Query: 1085 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
Q + + + T +IIAHRLNTI + D I++L G ++E +EL+ G
Sbjct: 531 QAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRG 581
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 3e-36
Identities = 109/535 (20%), Positives = 222/535 (41%), Gaps = 78/535 (14%)
Query: 9 IGYIYAFSIFVGVVLGVLCEAQYFQNVM--RVGFRLRSTLVAAVFRKSLRI------THE 60
+ + + +G + + + Q + + + L +F K R+
Sbjct: 73 FDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRT- 131
Query: 61 ARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRIIISLVLLYNELGVASLLGALL 119
G I + + D + + V ++ +S + ++++++ + SL+ +
Sbjct: 132 -----PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSI 186
Query: 120 LVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMN----EILAAMDAVKCYAWENSFQSKV 175
+ + + S+ +K E + + +G +N E ++ + +K + E K
Sbjct: 187 VPLTVLITQIVSSQTRKYFYE--NQ--RVLGQLNGIIEEDISGLTVIKLFTREEKEMEKF 242
Query: 176 QNVRNDEL--SWFRKAQFLAA----CNSFILNSIPVLVTVVSFGMFTLLG----GDLTPA 225
V N+ L KAQ + + + N L++ G L G +
Sbjct: 243 DRV-NESLRKVGT-KAQIFSGVLPPLMNMVNNLGFALISGFG-GWLALKDIITVGTIA-- 297
Query: 226 RAFTSLS-LFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP- 283
F S F PL L N + A S +R+ E L EE+ P+ +
Sbjct: 298 -TFIGYSRQFT---RPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRG 353
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-------GE 336
I +N +FS+D ++P L +I I G VA+VG TG GKT++++ ++ G+
Sbjct: 354 EIEFKNVWFSYD--KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ 411
Query: 337 LP----PVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 391
+ + + +R ++ V Q + +F+ TV++N+ +G+ A E+ + L H
Sbjct: 412 ILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN--PGATDEEIKEAAKLTH 469
Query: 392 DLD----LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 447
D LP G T + + G ++S GQ+Q +++ RA +N + I D+ S +D +
Sbjct: 470 -SDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEK 528
Query: 448 QV---FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDL 496
+ + + GKT +++ H L+ + D II++ +G + E G ++L
Sbjct: 529 SIQAAMWKL----MEGKTSIIIA---HRLNTIKNADLIIVLRDGEIVEMGKHDEL 576
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 6e-73
Identities = 85/266 (31%), Positives = 142/266 (53%), Gaps = 9/266 (3%)
Query: 873 SLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFT 932
+E + +L E V + P G I+FE+V Y L +SFT
Sbjct: 21 MFIDMENM---FDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFT 76
Query: 933 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQS 992
+ P + +VG +GAGKS++L LFR ++ G I IDG DI++ LR +G++PQ
Sbjct: 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQD 136
Query: 993 PVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 1049
VLF+ T+ N+ + ++ A + A + DAI G QV E G S G
Sbjct: 137 TVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGG 194
Query: 1050 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 1109
++Q ++++R +L+ I++LDEAT+A+D + IQ ++ + + T +++AHRL+T+++
Sbjct: 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254
Query: 1110 CDRILLLDSGRVLEYDTPEELLSNEG 1135
D+IL++ G ++E E LLS G
Sbjct: 255 ADQILVIKDGCIVERGRHEALLSRGG 280
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 9e-39
Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 28/287 (9%)
Query: 240 PLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL-LPN-PPLTSGLPAISIRNGYFSWDSK 297
++ + + + ++ M + L E ++ LP PL I N +FS+
Sbjct: 7 HHHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD- 65
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------- 347
R TL +++ + G +A+VG +G GK++++ +L +S I
Sbjct: 66 -GRETLQDVSFTVMPGQTLALVGPSGAGKSTILR-LLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 348 ---RGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVT 402
R + VPQ + +FN T+ DNI +G +A E A + + P G T
Sbjct: 124 ASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGN-DEVEAAAQAAGIHDAIMAFPEGYRT 182
Query: 403 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 462
++GERG+ +SGG+KQRV++AR + + + D+ SALD R + + + +T
Sbjct: 183 QVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI-QASLAKVCANRT 241
Query: 463 RVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKL 506
++V H LS V D+I+++ +G + E G E L + G ++ +
Sbjct: 242 TIVVA---HRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADM 285
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 233 bits (598), Expect = 4e-70
Identities = 82/240 (34%), Positives = 141/240 (58%), Gaps = 5/240 (2%)
Query: 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G+
Sbjct: 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 967 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAH 1023
+LIDG D+A LR+ +G++ Q VL + ++ N+ +P S + A + A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAG 123
Query: 1024 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1083
D I G + V E G S GQRQ ++++RAL+ KIL+ DEAT+A+D ++ +
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 1084 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1143
I + + + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 184 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 2e-34
Identities = 71/234 (30%), Positives = 114/234 (48%), Gaps = 31/234 (13%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 341
I+ RN F + + L NINL I G ++ IVG +G GK++L + P +
Sbjct: 7 DITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 342 ------DASAV----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ- 390
D + +R V V Q + + N ++ DNI + EK I L
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAG 123
Query: 391 -HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 448
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 449 V---FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDL 496
+ + + G+T +++ H LS V DRII++ +G + E+G ++L
Sbjct: 184 IMRNMHKICK----GRTVIIIA---HRLSTVKNADRIIVMEKGKIVEQGKHKEL 230
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 1e-68
Identities = 76/231 (32%), Positives = 125/231 (54%), Gaps = 7/231 (3%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
+ V Y + +L +SF P+ + G +G GKS++ + L R + G I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL----DPFSEHSDADLWEALERAHL 1024
IDG I L + R +G + Q + +GT+R NL + +++D DLW+ L+ A
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG--DYTDEDLWQVLDLAFA 118
Query: 1025 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1084
+ + L+ +V E G S GQRQ L+++RA LR KIL+LDEATA++D +++++
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 1085 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
QK + K T L+IAHRL+TI+D D+I ++ G++ EL++
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHP 229
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 1e-36
Identities = 63/242 (26%), Positives = 119/242 (49%), Gaps = 29/242 (11%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-------GEL 337
+S R+ F++D L +I+ + S++A G +G GK+++ S + GE+
Sbjct: 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 338 ----PPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE--KAIDVTSLQ 390
P+ + S R + +V Q S I T+R+N+ +G + + + +D+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 391 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV- 449
++ +P TE+GERGV ISGGQ+QR+++ARA N + + D+ ++LD+ V
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 450 --FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQ 504
D ++ G+T +++ H LS + D+I + +G + G +L L+
Sbjct: 180 KALDSLMK----GRTTLVIA---HRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYA 232
Query: 505 KL 506
K
Sbjct: 233 KY 234
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 228 bits (584), Expect = 5e-68
Identities = 81/241 (33%), Positives = 140/241 (58%), Gaps = 8/241 (3%)
Query: 907 GSIKFEDVVLRYRPELP-PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 965
+I+F DV Y + L ++F IP +VG TG+GKS++ L+R + E G
Sbjct: 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-G 74
Query: 966 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERA 1022
I I G ++ K+ +R I+GI+PQ +LF+ T+++N+ + +D ++ +A + A
Sbjct: 75 DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL--DATDEEVIKATKSA 132
Query: 1023 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1082
L D I D V G S G+RQ ++++R LL+ KI++ DEAT+++D +T+
Sbjct: 133 QLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY 192
Query: 1083 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1142
L QK + + K+ T++IIAHRL+TI + I+LL+ G+++E T ++LL G +++M
Sbjct: 193 LFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNG-EYAEMW 251
Query: 1143 Q 1143
Sbjct: 252 N 252
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 27/242 (11%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML------GE- 336
I + FS+ + TL +IN IP G+ A+VG TG GK+++ + G+
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI 76
Query: 337 ------LPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 390
+ + S IR + VPQ + +FN T++ NIL+G A E+ I T
Sbjct: 77 KIGGKNVNKYNRNS--IRSIIGIVPQDTILFNETIKYNILYGK--LDATDEEVIKATKSA 132
Query: 391 HDLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 447
D LP T +G +G+ +SGG++QR+++AR + + + IFD+ S+LD+
Sbjct: 133 QLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY 192
Query: 448 QVFDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQ 504
+ + +T +++ H LS + + IIL+++G + E+GT +DL +
Sbjct: 193 LF-QKAVEDLRKNRTLIIIA---HRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYA 248
Query: 505 KL 506
++
Sbjct: 249 EM 250
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 2e-56
Identities = 75/244 (30%), Positives = 124/244 (50%), Gaps = 8/244 (3%)
Query: 906 SGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 963
G +KF+DV Y P + VL GL+FT+ P +VG G+GKS++ L + +
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQ-VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 964 RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD--PFSEHSDADLWEALER 1021
G++L+DG + ++ L + + Q P+LF + R N+ + ++
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1022 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1081
+ D I G D +V E G S GQRQ ++L+RAL+R+ ++L+LD AT+A+D
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 1082 ALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1139
+Q+ + E E+ S T+L+I +L+ IL L G V E T +L+ G +
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG-CYR 251
Query: 1140 KMVQ 1143
MV+
Sbjct: 252 SMVE 255
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 2e-34
Identities = 67/259 (25%), Positives = 113/259 (43%), Gaps = 33/259 (12%)
Query: 277 PLTSGLP------AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 330
PL+ L + ++ F++ + L + + G + A+VG G GK+++
Sbjct: 3 PLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA 62
Query: 331 SAML-------GEL----PPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPA 378
+ + G++ P+ + VA V Q +F + R+NI +G
Sbjct: 63 ALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLT-RTP 121
Query: 379 RYEKAIDVTSLQ--HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 435
E+ V HD + P G TE+GE G +SGGQ+Q V++ARA+ + I D
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 436 DPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKE 489
+ SALDA +V E + +T +L+T LS I+ + EG V E
Sbjct: 182 NATSALDAGNQLRVQRLLYESP--EWASRTVLLIT---QQLSLAERAHHILFLKEGSVCE 236
Query: 490 EGTFEDLSNNGELFQKLME 508
+GT L G ++ ++E
Sbjct: 237 QGTHLQLMERGGCYRSMVE 255
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 6e-32
Identities = 50/246 (20%), Positives = 102/246 (41%), Gaps = 33/246 (13%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+ + + + + +L +S+ I DK + G GAGK+++LN L G +
Sbjct: 22 IQLDQIGRMKQGK--TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 969 IDGFDIAKFG--LMDLRKILGIIPQS---PVLFSGTVR--------FNLDPFSEHSDADL 1015
+ G K G +R+ +G + S V ++ + + D
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR 139
Query: 1016 WEA---LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 1072
EA L+ + ++ L S G++Q + ++RAL+ + ++L+LDE
Sbjct: 140 NEAHQLLKLVGMSAKAQQYIGYL-----------STGEKQRVMIARALMGQPQVLILDEP 188
Query: 1073 TAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1128
A +D + + + + M+ + H + I +ILLL G+ ++ E
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248
Query: 1129 ELLSNE 1134
++L++E
Sbjct: 249 DILTSE 254
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 1e-21
Identities = 44/240 (18%), Positives = 89/240 (37%), Gaps = 35/240 (14%)
Query: 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 342
I + + L I+ I G + G G GKT+L++ + P S
Sbjct: 20 MLIQLDQIGRMKQ---GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76
Query: 343 ASAV--------------IRGTVAYVPQ---VSWIFNATVRDNILFGSAFEPARYEKAID 385
+ +R + +V + V D ++ G+ Y+
Sbjct: 77 TVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQD--- 133
Query: 386 VTSLQHD-----LDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLS 439
+ + L L+ ++ ++ + +S G+KQRV +ARA+ V I D+P +
Sbjct: 134 IDDEIRNEAHQLLKLV---GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190
Query: 440 ALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 496
LD + + + VT+ + ++ +I+L+ +G ++G ED+
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 9e-30
Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 28/219 (12%)
Query: 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 342
A+S+ N F + ++ +N D+ G ++A++G G GK++L+ +LG P+
Sbjct: 3 KALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ- 59
Query: 343 ASAVIRGTVAYVPQ-VSWIFNATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLL 396
+ ++ +VPQ S F +V D +L G + F K+ D LD L
Sbjct: 60 GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTF---AKPKSHDYQVAMQALDYL 116
Query: 397 PGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 455
++T + +R +SGGQ+Q + +ARA+ S + + D+P SALD V +
Sbjct: 117 ---NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLS--LL 171
Query: 456 GELS---GKTRVLVTNQLHFLSQV----DRIILVHEGMV 487
+L+ T V T H +QV ++ +L+++
Sbjct: 172 IDLAQSQNMTVVFTT---HQPNQVVAIANKTLLLNKQNF 207
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 3e-29
Identities = 51/242 (21%), Positives = 117/242 (48%), Gaps = 41/242 (16%)
Query: 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 967
++ E++ Y+ E + L+F + D + ++G+ G GKS++L+ L I +G+I
Sbjct: 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 968 LIDGFDIAKFGLMDLRKILGIIPQSPVL-FSGTV-------RF-NLDPFSEHSDADL--- 1015
++ + +G +PQ F+ +V R +++ F++ D
Sbjct: 63 -------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 1016 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1075
+AL+ +L +R + + S GQRQL+ ++RA+ K+++LDE T+A
Sbjct: 110 MQALDYLNLTHLAKR-------EFTS----LSGGQRQLILIARAIASECKLILLDEPTSA 158
Query: 1076 VDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132
+D+ ++ + + + ++ T++ H+ N ++ ++ LLL+ + ++ +L+
Sbjct: 159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLN-KQNFKFGETRNILT 217
Query: 1133 NE 1134
+E
Sbjct: 218 SE 219
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 1e-29
Identities = 67/244 (27%), Positives = 118/244 (48%), Gaps = 34/244 (13%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR----IVELER 964
+K E++ Y + L G++ I + I+G G GKS TLF+ I++
Sbjct: 8 LKVEELNYNY-SDGTHALKGINMNIKRGEVTAILGGNGVGKS----TLFQNFNGILKPSS 62
Query: 965 GRILIDGFDIA--KFGLMDLRKILGIIPQSPV--LFSGTVR----F---NLDPFSEHSDA 1013
GRIL D I + G+M LR+ +GI+ Q P LFS +V F N+ E
Sbjct: 63 GRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK-LPED--- 118
Query: 1014 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 1073
E +R +A++R G++ + S GQ++ ++++ L+ K+L+LDE T
Sbjct: 119 ---EIRKRV--DNALKR--TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPT 171
Query: 1074 AAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130
A +D + I K + E + T++I H ++ + CD + ++ GRV+ P+E+
Sbjct: 172 AGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
Query: 1131 LSNE 1134
+ +
Sbjct: 232 FAEK 235
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 8e-23
Identities = 60/283 (21%), Positives = 110/283 (38%), Gaps = 60/283 (21%)
Query: 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS- 341
+ + +++ L IN++I G + AI+GG G GK++L G L P S
Sbjct: 6 YILKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63
Query: 342 -------------DASAVIRGTVAYV---P--QVSWIFNATVRDNILFG------SAFE- 376
+R ++ V P Q +F+A+V ++ FG E
Sbjct: 64 RILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQ---LFSASVYQDVSFGAVNMKLPEDEI 120
Query: 377 PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 436
R + A+ T ++H D +S GQK+RV++A + V I D+
Sbjct: 121 RKRVDNALKRTGIEHLKDKPT-----------HCLSFGQKKRVAIAGVLVMEPKVLILDE 169
Query: 437 PLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGT- 492
P + LD ++ ++ E G T ++ T+ + + D + ++ EG V +G
Sbjct: 170 PTAGLDPMGVSEIMKLLVEMQKE-LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 228
Query: 493 ---FED---LSNNG-------ELFQKLMENAGKMEEYVEEKED 522
F + + L + L E G + + ++E
Sbjct: 229 KEVFAEKEVIRKVNLRLPRIGHLMEILKEKDGFVFDELDEGHH 271
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 8e-29
Identities = 53/244 (21%), Positives = 103/244 (42%), Gaps = 35/244 (14%)
Query: 908 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR----IV 960
I+ +V + P L +S I + + + G TG+GKS TL + ++
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKS----TLLQIVAGLI 57
Query: 961 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV--LFSGTVR----F---NLDPFSEHS 1011
E G +L DG ++R+ +GI Q P F+ V F N P
Sbjct: 58 EPTSGDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP-DR-- 111
Query: 1012 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1071
+ + K A+ L D+ S G+++ ++++ ++ IL+LDE
Sbjct: 112 -----DPVPLV--KKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE 164
Query: 1072 ATAAVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1129
+D + + + + + T+++I+H + T+I+ DR+++L+ G+ + T E
Sbjct: 165 PLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRME 224
Query: 1130 LLSN 1133
L
Sbjct: 225 FLEK 228
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-25
Identities = 55/246 (22%), Positives = 97/246 (39%), Gaps = 43/246 (17%)
Query: 284 AISIRNGYFSWD--SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 341
I + N + + E+ L N++L I G + + G TG GK++L+ + G + P S
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 342 DASAV---------IRGTVAYV---P--QVSWIFNATVRDNILFG------SAFEPARYE 381
IR + P Q F V D + F +
Sbjct: 62 GDVLYDGERKKGYEIRRNIGIAFQYPEDQ---FFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 382 KAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSA 440
KA++ L D +R +SGG+K+RV++A + D+ I D+PL
Sbjct: 119 KAMEFVGL----------DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168
Query: 441 LDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL 496
LD + + + GKT +L++ H + V DR++++ +G +GT +
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILIS---HDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
Query: 497 SNNGEL 502
+
Sbjct: 226 LEKYDP 231
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 3e-28
Identities = 55/256 (21%), Positives = 119/256 (46%), Gaps = 28/256 (10%)
Query: 894 IESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKS--- 950
+ S++ G++ +D+ R + +L G+SF I + G++G GAGK+
Sbjct: 1 MGSDKIHHHHHHMGAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTL 58
Query: 951 SMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSE 1009
+++TL + G + + G ++ + ++RK++ +P+ + L
Sbjct: 59 RIISTLIKPSS---GIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFV-- 112
Query: 1010 HSDADLWEALERAHLKDAIRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1067
A + A + +++ + R GL ++ + +S G + L ++RAL+ ++
Sbjct: 113 ---AGFY-ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLA 168
Query: 1068 VLDEATAAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-----CDRILLLDSGRV 1121
+LDE T+ +DV ++K +++ + T+L+ +H + CDRI L+ +G +
Sbjct: 169 ILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH----NMLEVEFLCDRIALIHNGTI 224
Query: 1122 LEYDTPEELLSNEGSS 1137
+E T EEL +
Sbjct: 225 VETGTVEELKERYKAQ 240
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 5e-18
Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 44/240 (18%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVIRGTVAY 353
I+ +I G + ++G G GKT+ + + + P V + +R ++Y
Sbjct: 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92
Query: 354 VPQVSWIF-NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 405
+P+ + + N + + F S+ E+A ++ L +
Sbjct: 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS------- 145
Query: 406 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTR 463
S G +++ +ARA+ N + I D+P S LD R+V + E G T
Sbjct: 146 ----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE--GLT- 198
Query: 464 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL---SNNGELFQKLMENAGKMEEY 516
+LV++ H + +V DRI L+H G + E GT E+L + + E E +
Sbjct: 199 ILVSS--HNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCSENF 256
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 3e-27
Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 31/222 (13%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ D+ + Y VL ++ TI + V G G GK+++L T+ ++ +G I+
Sbjct: 11 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSE-----HSDADLWEALERA 1022
+G I K ++ + +P+ ++ +V L + + ++ +ALE
Sbjct: 68 YNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 122
Query: 1023 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1082
+ D + LG S G + + L+ LL ++I VLD+ A+D +
Sbjct: 123 EVLD--LKKKLG----------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 170
Query: 1083 LIQKTIREEFKSCTMLIIA--HRLNTIIDCDRILLLDSGRVL 1122
+ K+I E K ++II+ L+ CD L
Sbjct: 171 KVLKSILEILKEKGIVIISSREELSY---CDVNENLHKYSTK 209
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 2e-18
Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 31/222 (13%)
Query: 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 342
+ IR+ +D L I + I G++V G G GKT+L+ + L P+
Sbjct: 9 SKLEIRDLSVGYDKPV----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG 64
Query: 343 ASAV-------IRGTVAYVPQVSWIF-NATVRDNILF-----GSAFEPARYEKAIDVTSL 389
++G + ++P+ + +V D + G A++ +
Sbjct: 65 EIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV 124
Query: 390 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 449
++G +S G +RV +A + N+++++ DDP+ A+D +V
Sbjct: 125 LDLKK--------KLG----ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 172
Query: 450 FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 491
+ ++ + LS D +H+ K +
Sbjct: 173 LKSILEILKEKGIVIISSR--EELSYCDVNENLHKYSTKIDK 212
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 36/229 (15%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
L LS + + + +VG GAGKS++L + + +G I G + + L
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLA 72
Query: 984 KILGIIPQSPVL-FSGTVR----FNLDPFSEHSDADL-WEALERAHLKDAIRRNSLGLDA 1037
+ Q F+ V + + +L + L D + R++ L
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHD---KTRTELLNDVAGALALDDKLGRSTNQL-- 127
Query: 1038 QVSEAGENFSVGQRQLLSLSRALL-------RRSKILVLDEATAAVDVR----TDALIQK 1086
S G+ Q + L+ +L ++L+LDE ++DV D ++
Sbjct: 128 ---------SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 1087 TIREEFKSCTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNE 1134
++ +++ +H LN T+ R LL G++L EE+L+
Sbjct: 179 LSQQ---GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 224
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 3e-19
Identities = 44/219 (20%), Positives = 77/219 (35%), Gaps = 37/219 (16%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDASAVI 347
AE L ++ ++ G ++ +VG G GK++L++ M G P+ SA
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK 70
Query: 348 RG-TVAYVPQVSWI-FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 405
AY+ Q F V + +++K L L + +
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYLTLH------QHDKT-RTELLNDVAGAL---ALDDKL 120
Query: 406 ERGVN-ISGGQKQRVSMARA-------VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 457
R N +SGG+ QRV +A + + D+P+++LD +
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALS 180
Query: 458 LSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGT 492
G V+ H L+ R L+ G + G
Sbjct: 181 QQGLAIVMS---SHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 28/229 (12%)
Query: 285 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----- 338
I ++N + K ER +L NINL++ G V I+G G GKT+L+ A+ G LP
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNI 60
Query: 339 -----PVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDL 393
V IR +P+ ++ TV D + + + +++ L
Sbjct: 61 FINGMEVRKIRNYIRY-STNLPE-AYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA---L 115
Query: 394 DLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 452
L EI R + +S GQ V + A+ S ++ D+P +DA R V R
Sbjct: 116 KLGE-----EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA-ARRHVISR 169
Query: 453 CIRGELSGKTRVLVT-NQLHFLSQVDRIILV-HEGMVKEEGTFEDLSNN 499
I+ E GK +LVT + ++ + +L +
Sbjct: 170 YIK-EY-GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 2e-22
Identities = 50/235 (21%), Positives = 96/235 (40%), Gaps = 28/235 (11%)
Query: 909 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
I+ ++V + + L ++ + +KV I+G G+GK+++L + ++ G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYS-GN 59
Query: 967 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG--TVRFNLDPFSE---HSDADLWEALER 1021
I I+G ++ K +R + P + TV + + E E L+
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 1022 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1081
L + I L ++ + S GQ L+ S AL + +I+ LDE VD
Sbjct: 115 LKLGEEI------LRRKLYK----LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164
Query: 1082 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLE-YDTPEELLSNE 1134
+I + I+E K +++ H L+ + + G L+ + ELL +
Sbjct: 165 HVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESS 217
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 5e-23
Identities = 71/275 (25%), Positives = 122/275 (44%), Gaps = 39/275 (14%)
Query: 888 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRT 945
+ IK ++ + + L+ +S +P G++G +
Sbjct: 4 HHHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGAS 63
Query: 946 GAGKSSMLNTLFRIV-ELER---GRILIDGFDIAKF---GLMDLRKILGIIPQSPVLFSG 998
GAGKS TL R V LER G +L+DG ++ L R+ +G+I Q L S
Sbjct: 64 GAGKS----TLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS 119
Query: 999 -TVRFNLDPFSEHSDADLWEALERAHL-KDAIRR--NSL----GLDAQVSEAGENFSVGQ 1050
TV N+ LE + KD ++R L GL + N S GQ
Sbjct: 120 RTVFGNVA-----------LPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQ 168
Query: 1051 RQLLSLSRALLRRSKILVLDEATAAVDVRTD----ALIQKTIREEFKSCTMLIIAHRLNT 1106
+Q ++++RAL K+L+ D+AT+A+D T L++ I T+L+I H ++
Sbjct: 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD-INRRLG-LTILLITHEMDV 226
Query: 1107 IID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140
+ CD + ++ +G ++E DT E+ S+ + ++
Sbjct: 227 VKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 1e-13
Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 41/251 (16%)
Query: 274 PNPPLTSGLPAISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISA 332
I + N + L N++L +P G + ++G +G GK++LI
Sbjct: 14 SGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIR- 72
Query: 333 MLGELPPVSDASAVIRGT----------VAYVPQVSWIF-------NATVRDNILFGSAF 375
+ L ++ S ++ G Q+ IF + TV N+
Sbjct: 73 CVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL--PL 130
Query: 376 EPARYEKA-ID--VTSLQHDLDLLPGGDVTEIGERG----VNISGGQKQRVSMARAVYSN 428
E K + VT L L L+ +G++ N+SGGQKQRV++ARA+ SN
Sbjct: 131 ELDNTPKDEVKRRVTEL---LSLV------GLGDKHDSYPSNLSGGQKQRVAIARALASN 181
Query: 429 SDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEG 485
V + D SALD R + + + I L G T +L+T+++ + ++ D + ++ G
Sbjct: 182 PKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAVISNG 240
Query: 486 MVKEEGTFEDL 496
+ E+ T ++
Sbjct: 241 ELIEQDTVSEV 251
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-22
Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 273 LPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 332
L + + S L +I G ++ IVG G GKT+ +
Sbjct: 346 LSERVDVERETLVEYPRLVKDYGSFK----LEVEPGEIRKGEVIGIVGPNGIGKTTFVKM 401
Query: 333 MLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 391
+ G P TVAY PQ + + TV + L T L
Sbjct: 402 LAGVEEPTEG-KVEWDLTVAYKPQYIKAEYEGTVYE--LLSKIDSSK-LNSNFYKTELLK 457
Query: 392 DLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 450
L + ++ +R V ++SGG+ QRV++A + ++D+++ D+P + LD V
Sbjct: 458 PLGI------IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511
Query: 451 DRCIR--GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLM 507
R IR E + KT ++V + + + V DR+I V EG G E + +
Sbjct: 512 -RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI-VFEGEPGRHGRALPPMGMREGMNRFL 569
Query: 508 ENAG 511
+ G
Sbjct: 570 ASVG 573
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 2e-20
Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 40/226 (17%)
Query: 912 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL-------FRIVELER 964
ED V RY VL+ + VGIVG G GK++ + L
Sbjct: 95 EDCVHRYGVNAF-VLYR-LPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS- 151
Query: 965 GRILIDGFDIAKFGLMDLRKILG----IIPQS------PVLFSGTVRFNLDPFSEHSDAD 1014
+I F + ++ + + P G VR L E +
Sbjct: 152 WDNVIRAFRGNEL-QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFE 210
Query: 1015 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1074
E ++ L++ LD ++ + S G+ Q ++++ ALLR++ DE ++
Sbjct: 211 --EVVKELELENV-------LDRELHQ----LSGGELQRVAIAAALLRKAHFYFFDEPSS 257
Query: 1075 AVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIID--CDRILLL 1116
+D+R + + IR + +L++ H L ++D D I ++
Sbjct: 258 YLDIRQRLKVARVIR-RLANEGKAVLVVEHDLA-VLDYLSDVIHVV 301
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 7e-19
Identities = 48/217 (22%), Positives = 85/217 (39%), Gaps = 32/217 (14%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
L I + +GIVG G GK++ + L + E G++ D
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL------------T 418
Query: 985 ILGIIPQSPVLFSGTVR---FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 1041
+ + GTV +D +S+ E L+ + D RN V +
Sbjct: 419 VAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRN-------VED 471
Query: 1042 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLI 1099
S G+ Q ++++ LLR + I +LDE +A +DV + + IR E T L+
Sbjct: 472 ----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527
Query: 1100 IAHRLNTIID--CDRILLLDSGRVLEYDTPEELLSNE 1134
+ H + +ID DR+++ + G + +
Sbjct: 528 VEHDV-LMIDYVSDRLIVFE-GEPGRHGRALPPMGMR 562
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 6e-15
Identities = 58/255 (22%), Positives = 95/255 (37%), Gaps = 51/255 (20%)
Query: 283 PAISIRNGYFSWD-----SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 337
AISI N D +L + G +V IVG G GKT+ + + G+L
Sbjct: 82 NAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQL 141
Query: 338 PP-----------------VSDASAVIR----GTVAYVPQ---VSWIFNATV-RDNILFG 372
P ++ G + V + V + A + L
Sbjct: 142 IPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLK 201
Query: 373 SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 432
E ++E+ + L++ LD +SGG+ QRV++A A+ + +
Sbjct: 202 KVDEVGKFEEVVKELELENVLDRELH-----------QLSGGELQRVAIAAALLRKAHFY 250
Query: 433 IFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVH-----E 484
FD+P S LD +V R IR L GK ++V + L L + D I +V+
Sbjct: 251 FFDEPSSYLDIRQRLKV-ARVIR-RLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVY 308
Query: 485 GMVKEEGTFEDLSNN 499
G+ + + N
Sbjct: 309 GIFSKPKGTRNGINE 323
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 3e-22
Identities = 43/256 (16%), Positives = 91/256 (35%), Gaps = 32/256 (12%)
Query: 886 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRT 945
+EA ++ S S F L+ VL+ S+ + ++G
Sbjct: 329 FRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQG-DFVLNVEEGEFSDSEILVMMGEN 387
Query: 946 GAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV--LFSGTVRFN 1003
G GK++++ L ++ + G+ + +++ + + V LF +R
Sbjct: 388 GTGKTTLIKLLAGALKPDEGQDIPKL-NVSM-----KPQKIAPKFPGTVRQLFFKKIR-- 439
Query: 1004 LDPFSEHSDADLW-EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062
+ + + ++ + D I + V S G+ Q +++ AL
Sbjct: 440 ----GQFLNPQFQTDVVKPLRIDDIIDQE-------VQH----LSGGELQRVAIVLALGI 484
Query: 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSG 1119
+ I ++DE +A +D + K IR T I+ H D++++ +
Sbjct: 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGI 544
Query: 1120 RVLE--YDTPEELLSN 1133
PE LL+
Sbjct: 545 PSKNAHARAPESLLTG 560
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 4e-22
Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 33/280 (11%)
Query: 248 ITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPA---------ISIRNGYFSWDSKA 298
+T + + + + E + L + S Y S
Sbjct: 304 VTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQ 363
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-V 357
L + ++ ++G G GKT+LI + G L P + + + V+ PQ +
Sbjct: 364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-DEGQDIPKLNVSMKPQKI 422
Query: 358 SWIFNATVRDNI---LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 414
+ F TVR + G P + + +D ++SGG
Sbjct: 423 APKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQ-----------HLSGG 471
Query: 415 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLH 471
+ QRV++ A+ +D+++ D+P + LD+ R I + KT +V +
Sbjct: 472 ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NKKTAFIVEHDFI 529
Query: 472 FLSQV-DRIILVHEGMVKE--EGTFEDLSNNGELFQKLME 508
+ + D++I+ K E L F K +
Sbjct: 530 MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNLN 569
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 3e-19
Identities = 45/248 (18%), Positives = 89/248 (35%), Gaps = 39/248 (15%)
Query: 912 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI---- 967
V RY LH L T P +G+VG G GKS+ L L + GR
Sbjct: 81 AHVTHRYSAN-SFKLHRL-PTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPP 138
Query: 968 -------LIDGFDIAKFGLMDLRKILGIIPQSPVLF------SGTVRF---NLDPFSEHS 1011
G ++ + L + I + + G V+ L E S
Sbjct: 139 EWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKS 198
Query: 1012 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1071
D+ ++ L++ ++R+ + + S G+ Q ++ + ++ + + + DE
Sbjct: 199 PEDVKRYIKILQLENVLKRD-------IEK----LSGGELQRFAIGMSCVQEADVYMFDE 247
Query: 1072 ATAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1127
++ +DV+ + IR K ++ + H L+ + D + ++ +
Sbjct: 248 PSSYLDVKQRLNAAQIIRSLLAPTK--YVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVT 305
Query: 1128 EELLSNEG 1135
EG
Sbjct: 306 LPASVREG 313
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 8e-18
Identities = 43/246 (17%), Positives = 84/246 (34%), Gaps = 41/246 (16%)
Query: 282 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-- 339
LP + + + + + L+ G ++ +VG G GK++ + + G+ P
Sbjct: 75 LPTNLEAHVTHRYSANSFK---LHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL 131
Query: 340 --------VSDASAVIRGT---------------VAYVPQVSWIFNATVRDNILF-GSAF 375
+ RG+ PQ ++ + G
Sbjct: 132 GRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELL 191
Query: 376 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIF 434
+ + DV L L + +R + +SGG+ QR ++ + +DV++F
Sbjct: 192 KLRMEKSPEDVKRYIKILQL------ENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMF 245
Query: 435 DDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 491
D+P S LD + IR L K + V + L L + D + +++
Sbjct: 246 DEPSSYLDVKQRLNAA-QIIR-SLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGV 303
Query: 492 TFEDLS 497
S
Sbjct: 304 VTLPAS 309
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 5e-22
Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 23/258 (8%)
Query: 265 LLAEEKILLPNPPLTSGLPA------ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAI 318
L +E + + Y L +I G ++ I
Sbjct: 258 YLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGI 317
Query: 319 VGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFEP 377
VG G GKT+ + + G P ++ TVAY PQ + + TV + L
Sbjct: 318 VGPNGIGKTTFVKMLAGVEEP-TEGKIEWDLTVAYKPQYIKADYEGTVYE--LLSKIDAS 374
Query: 378 ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDD 436
+ T L L + ++ +R V +SGG+ QRV++A + ++D+++ D+
Sbjct: 375 -KLNSNFYKTELLKPLGI------IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDE 427
Query: 437 PLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTF 493
P + LD V R IR E + KT ++V + + + V DR++ V EG + G
Sbjct: 428 PSAYLDVEQRLAVS-RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLM-VFEGEPGKYGRA 485
Query: 494 EDLSNNGELFQKLMENAG 511
E + + + G
Sbjct: 486 LPPMGMREGMNRFLASIG 503
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 2e-19
Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 36/224 (16%)
Query: 912 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV------ELERG 965
ED V RY VL+ L + VGIVG G GKS+ + L + + +
Sbjct: 25 EDCVHRYGVN-AFVLYRL-PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSW 82
Query: 966 RILIDGFDIAKFGLMDLRKILG----IIPQS------PVLFSGTVRFNLDPFSEHSDADL 1015
+I F + K+ + + P G V L E +
Sbjct: 83 DGVIRAFRGNEL-QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLE- 140
Query: 1016 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1075
E ++ L++ + R + S G+ Q ++++ ALLR + DE ++
Sbjct: 141 -EVVKALELENVLERE-------IQH----LSGGELQRVAIAAALLRNATFYFFDEPSSY 188
Query: 1076 VDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLL 1116
+D+R + IR ++L++ H L + D I ++
Sbjct: 189 LDIRQRLNAARAIR-RLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 3e-19
Identities = 50/251 (19%), Positives = 89/251 (35%), Gaps = 35/251 (13%)
Query: 889 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 948
+ + + +V Y L I + +GIVG G G
Sbjct: 268 PYEIKFTKTGERVEIERETLVTYPRLVKDYGSF---RLEVEPGEIKKGEVIGIVGPNGIG 324
Query: 949 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVR---FNLD 1005
K++ + L + E G+I D + + GTV +D
Sbjct: 325 KTTFVKMLAGVEEPTEGKIEWDL------------TVAYKPQYIKADYEGTVYELLSKID 372
Query: 1006 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1065
+S+ E L+ + D R S G+ Q ++++ LLR +
Sbjct: 373 ASKLNSNFYKTELLKPLGIIDLYDREVN-----------ELSGGELQRVAIAATLLRDAD 421
Query: 1066 ILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID--CDRILLLDSGRV 1121
I +LDE +A +DV + + IR E T L++ H + +ID DR+++ + G
Sbjct: 422 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFE-GEP 479
Query: 1122 LEYDTPEELLS 1132
+Y +
Sbjct: 480 GKYGRALPPMG 490
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-12
Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 46/220 (20%)
Query: 304 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAVIR---------- 348
L + G +V IVG G GK++ + + G+L P VIR
Sbjct: 38 LYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97
Query: 349 ------GTVAYVPQ------VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 396
G + V + + V + + A E + E+ + L++ L+
Sbjct: 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--KKADETGKLEEVVKALELENVLE-- 153
Query: 397 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 456
EI +SGG+ QRV++A A+ N+ + FD+P S LD IR
Sbjct: 154 -----REIQH----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAAR-AIR- 202
Query: 457 EL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTF 493
L GK+ ++V + L L + D I +V+ G G F
Sbjct: 203 RLSEEGKSVLVVEHDLAVLDYLSDIIHVVY-GEPGVYGIF 241
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 1e-21
Identities = 59/312 (18%), Positives = 123/312 (39%), Gaps = 34/312 (10%)
Query: 248 ITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAIS---------IRNGYFSWDSKA 298
+++ A V + + L E + + + L +S + + K
Sbjct: 220 VSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKL 279
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 358
L+ N + G ++ I+G G GKT+ ++GE+ + + ++Y PQ
Sbjct: 280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRI 339
Query: 359 WI-FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQK 416
+ ++ TV+ +A + A + + L+L + E V ++SGG+
Sbjct: 340 FPNYDGTVQQ--YLENASKDALSTSSWFFEEVTKRLNL------HRLLESNVNDLSGGEL 391
Query: 417 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLS 474
Q++ +A + +D+++ D P S LD R + + I+ ++ + L
Sbjct: 392 QKLYIAATLAKEADLYVLDQPSSYLDVEE-RYIVAKAIKRVTRERKAVTFIIDHDLSIHD 450
Query: 475 QV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKP 533
+ DRII V +G ++ G ++ M E++ E E D +T +P
Sbjct: 451 YIADRII-VFKGEPEKAGLATS--------PVTLKTG--MNEFLRELEVTFRRDAETGRP 499
Query: 534 AANGVDNDLPKE 545
N + + L +
Sbjct: 500 RVNKIGSYLDRV 511
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 1e-21
Identities = 49/279 (17%), Positives = 100/279 (35%), Gaps = 49/279 (17%)
Query: 887 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTG 946
++ E + +K+ ++ + L + + +GI+G G
Sbjct: 248 DEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF---QLVVDNGEAKEGEIIGILGPNG 304
Query: 947 AGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL-D 1005
GK++ L + + G + + ++ ++I + GTV+ L +
Sbjct: 305 IGKTTFARILVGEITADEGSVTPEKQILS----YKPQRIF-------PNYDGTVQQYLEN 353
Query: 1006 PFSEHSDADLW---EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062
+ W E +R +L + N V++ S G+ Q L ++ L +
Sbjct: 354 ASKDALSTSSWFFEEVTKRLNLHRLLESN-------VND----LSGGELQKLYIAATLAK 402
Query: 1063 RSKILVLDEATAAVDVRTDALIQKTIR---EEFKSCTMLIIAHRLNTIID--CDRILLLD 1117
+ + VLD+ ++ +DV ++ K I+ E K II H L+ I D DRI++
Sbjct: 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERK-AVTFIIDHDLS-IHDYIADRIIVFK 460
Query: 1118 SGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSL 1156
G + + ++LR L
Sbjct: 461 -GEPEKAGLATS------------PVTLKTGMNEFLREL 486
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 9e-19
Identities = 40/243 (16%), Positives = 92/243 (37%), Gaps = 35/243 (14%)
Query: 912 EDVVLRYRPELPPVLHGLSFTIP-PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 970
+V+ RY+ P + +G++G+ G GK+++L L G I+ +
Sbjct: 3 GEVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKIL-------AGEIIPN 52
Query: 971 --GFDIAKFGLMDLRKI----LGIIPQSPVLFSGTVR-----FNLDPFSEHSDADLWEAL 1019
+ L++ + + +S ++ ++ S+ + E L
Sbjct: 53 FGDPNSKVGKDEVLKRFRGKEIYNYFKEL--YSNELKIVHKIQYVEYASKFLKGTVNEIL 110
Query: 1020 ERAHLKDAIRR--NSLGL----DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 1073
+ + L + + + S G Q L ++ +LLR + + + D+ +
Sbjct: 111 TKIDERGKKDEVKELLNMTNLWNKDANI----LSGGGLQRLLVAASLLREADVYIFDQPS 166
Query: 1074 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132
+ +DVR + K IRE K+ ++++ H L + D I ++ + + +
Sbjct: 167 SYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA 226
Query: 1133 NEG 1135
G
Sbjct: 227 RVG 229
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 8e-16
Identities = 44/216 (20%), Positives = 81/216 (37%), Gaps = 29/216 (13%)
Query: 305 NINLDIPV-GSLVAIVGGTGEGKTSLISAMLGELPP----------VSDASAVIRGT-VA 352
L P +++ ++G G GKT+++ + GE+ P + RG +
Sbjct: 16 LFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIY 75
Query: 353 YVPQ---------VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 403
+ V I L G+ K + +LL ++T
Sbjct: 76 NYFKELYSNELKIVHKIQYVEYASKFLKGT--VNEILTKIDERGKKDEVKELL---NMTN 130
Query: 404 IGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 462
+ + +SGG QR+ +A ++ +DV+IFD P S LD + IR L K
Sbjct: 131 LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK-AIRELLKNKY 189
Query: 463 RVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 497
++V + L L + D I +++ + +
Sbjct: 190 VIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYA 225
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 3e-18
Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 23/226 (10%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 985
L G+S ++ D I+G G+GKS+++N + ++ + GR+ + DI + ++
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN---KEPAEL 79
Query: 986 --LGIIP--QSPVLFSG-TVRFN-LDPFSEHSDADLWEALERAHLKD--AIRRNS----- 1032
GI+ Q+P TV N L ++ L + + + +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 1033 -LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQ--KTI 1088
L L S GQ +L+ + RAL+ K++V+DE A V + +
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 1089 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
+ + T LII HRL+ +++ D + ++ +G+++ EE + N
Sbjct: 200 KAK--GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 84.4 bits (210), Expect = 3e-18
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 38/229 (16%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
+ G+ +P V ++G GAGK++ L+ + +V ++G+I+ +G DI
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITN---KPAHV 77
Query: 985 I--LGIIPQSP---VLFSG-TVRFNLD--PFSEHSDADLWEALERAH-----LKDAIRRN 1031
I +GI P +F TV NL ++ + LE LK+ R
Sbjct: 78 INRMGIA-LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE--RLK 134
Query: 1032 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT---AAVDVRTDALIQKTI 1088
L G S G++Q+L++ RAL+ R K+L++DE + A + V + + I
Sbjct: 135 QL--------GG-TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI 185
Query: 1089 REEFKSCTMLII---AHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1134
+E T+L++ A + +L++G+++ ELL NE
Sbjct: 186 NQE--GTTILLVEQNALGALKV--AHYGYVLETGQIVLEGKASELLDNE 230
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 1e-11
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 31/218 (14%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRG 349
+ I+L +P G +V ++G G GKT+ +SA+ G + A + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 350 TVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER- 407
+A VP+ IF TV +N++ G+ + D L+ L P + ER
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD---LEWIFSLFP-----RLKERL 133
Query: 408 ---GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKT 462
G +SGG++Q +++ RA+ S + + D+P L + +VF+ + I E G T
Sbjct: 134 KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE--GTT 191
Query: 463 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 499
+LV N L L ++ G + EG +L +N
Sbjct: 192 ILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 3e-16
Identities = 43/217 (19%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 305 NINLDIPVGS-LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVS 358
+N+D +G ++G TG GK+ + ++ + + G + +P +
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLE-LIAGIVKPDRGEVRLNGADITPLPPERRGIG 73
Query: 359 WIF-------NATVRDNILFGSAFEP-----ARYEKAIDVTSLQHDLDLLPGGDVTEIGE 406
++ + +V NI +G R + + + H LD P
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-------- 125
Query: 407 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------G 460
+SGG++QRV++ARA+ + + D+PLSA+D + EL
Sbjct: 126 ---RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVL-----MEELRFVQREFD 177
Query: 461 KTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
+ VT + + D + ++ G + E+G ++L
Sbjct: 178 VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 6e-09
Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 42/211 (19%)
Query: 939 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-- 996
++G TGAGKS L + IV+ +RG + ++G DI L R+ +G +PQ LF
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFPH 84
Query: 997 ---SGTVRFNLDPFSEHS-DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052
+ + L D + E E+ + + R A++S G G+RQ
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP----ARLS--G-----GERQ 133
Query: 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS------CTMLIIAHRLNT 1106
++L+RAL+ + ++L+LDE +AV D + + EE + +L + H
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAV----DLKTKGVLMEELRFVQREFDVPILHVTH---- 185
Query: 1107 IID-------CDRILLLDSGRVLEYDTPEEL 1130
D D + ++ +GR++E +EL
Sbjct: 186 --DLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 80.7 bits (198), Expect = 2e-15
Identities = 75/495 (15%), Positives = 136/495 (27%), Gaps = 144/495 (29%)
Query: 854 LNITSLLTAVLRL-ASLAENSLNAVER-VG-----NYIELPSEAPLVIESNRPPPGWPSS 906
+ ++ LRL +L V++ V NY ++ + PS
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-------KFLMSPIKTEQRQPSM 107
Query: 907 GSIKFEDVVLR-------------YRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 953
+ + + R R + L + P+ V I G G+GK+ +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 954 NTLFRIVELERGRILIDGFDI--AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDP-FSEH 1010
+ +++ F I + + + + Q L + +DP ++
Sbjct: 168 LDVCLSYKVQCKM----DFKIFWLNLKNCNSPETVLEMLQK--LL-----YQIDPNWTSR 216
Query: 1011 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 1070
SD L ++ +RR LL +LVL
Sbjct: 217 SDHSSNIKLRIHSIQAELRR----------------------LLKSKP--YENC-LLVLL 251
Query: 1071 EATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID------CDRILLLDSGRVLE 1123
+V+ F SC +L+ R + D I L L
Sbjct: 252 ------NVQN-----AKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 1124 YDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQI---------- 1173
D + LL +YL L E
Sbjct: 300 PDEVKSLL------------------LKYL------DCRPQDLPREVLTTNPRRLSIIAE 335
Query: 1174 ---DGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKK----TKDAVVTL 1226
DG W W L + SS L LE + + + A +
Sbjct: 336 SIRDGLATW---DNWKHVNCDKLTTIIESS---LNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 1227 QGVLE----GKHDKEIEESLNQ-HEVS-TDGWWSALYRMIEGLSVMSRLARN---RLHQS 1277
+L ++ +N+ H+ S + I + + ++ LH+S
Sbjct: 390 I-LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 1278 --DYDLEERSIDWDH 1290
D+ ++ D D
Sbjct: 449 IVDHYNIPKTFDSDD 463
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.0 bits (178), Expect = 6e-13
Identities = 75/517 (14%), Positives = 146/517 (28%), Gaps = 168/517 (32%)
Query: 300 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--GTVAYVP-Q 356
R LL + V I G G GKT + A V + +
Sbjct: 141 RQALLELR----PAKNVLIDGVLGSGKTWV-------------ALDVCLSYKVQCKMDFK 183
Query: 357 VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 416
+ W+ N + P + + Q D + D + + ++ +
Sbjct: 184 IFWL-N--------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 417 QRVSMARAVYSNSDVFIFDD--PLSALDAHVGRQVFD-RCIRGELSGKTRVLVTNQLHFL 473
+R+ + Y N + + + A +A F+ C ++L+T + F
Sbjct: 235 RRL-LKSKPYENC-LLVLLNVQNAKAWNA------FNLSC---------KILLTTR--FK 275
Query: 474 SQVDRI---ILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKT 530
D + H + T L K Y++ +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLK----------YLDCRPQ-------- 316
Query: 531 SKPAANGVDNDLPKEASDT---------RKTKEGKSVL-----IKQEERETGV-VSFKVL 575
DLP+E T ++G + + ++ T + S VL
Sbjct: 317 ----------DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 576 S------RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTD--------------- 614
+ + + + W D
Sbjct: 367 EPAEYRKMFDR-------------LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 615 QSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWL---IISSLYAAKRLHDAMLHSILRAP 671
S ++ +I S+ ++ V L N Y L I+ Y + D ++
Sbjct: 414 YSLVEKQPKESTISIPSIYL--ELKVKLENEYALHRSIVDH-YNIPKTFD--SDDLIPPY 468
Query: 672 M---VFFHTNPLGR-IINRFAKDLGDIDRNVAVFVNM-FMGQVSQLLSTFVLIGIVSTMS 726
+ + H +G + N + + R VF++ F+ Q I +
Sbjct: 469 LDQYFYSH---IGHHLKNIEHPERMTLFRM--VFLDFRFLEQ-----------KIRHDST 512
Query: 727 LW----AIMPLL--LLFYAAYLYYQSTAREVKRLDSI 757
W +I+ L L FY Y+ E + +++I
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAI 548
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 3e-10
Identities = 88/575 (15%), Positives = 170/575 (29%), Gaps = 165/575 (28%)
Query: 22 VLGVLCEAQ------YFQNVMRVGFRLRSTLVAAVFRKSLRITH---EARKNFASG--KI 70
+ L Q + + V+R+ ++ + + R+ +T E R +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 71 TNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELG------VASLLGALLLVFMF 124
+ + ++ QAL L A VL+ LG + + +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKN------VLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 125 PVQTF------------IISRMQKL----TKEGLQRTDKRIGLMNEILAAMDAVKCYAWE 168
+ F ++ +QKL R+D + I + ++
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 169 NSFQSK---VQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLT-- 223
+++ + NV+N + A F +C +L+T + L T
Sbjct: 241 KPYENCLLVLLNVQN---AKAWNA-FNLSC--------KILLTTRFKQVTDFLSAATTTH 288
Query: 224 -----PARAFT---SLSLFA-VLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP 274
+ T SL L LP +V+ N
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTN------------------- 326
Query: 275 NPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML 334
P + A SIR+G +WD ++N D T++I + L
Sbjct: 327 --PRRLSIIAESIRDGLATWD------NWKHVNCD---------------KLTTIIESSL 363
Query: 335 GELPPVS-----DASAVIRGTVAYVP----QVSWIFNATVRDNILFGSAFE--------P 377
L P D +V + ++P + W F+ D ++ + P
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIW-FDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 378 ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV---YSNSDVFIF 434
+I + L + + ++ R++ Y+ F
Sbjct: 422 KESTISI------PSIYLE--------------LKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 435 DD-PLSALD----AHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGM-VK 488
DD LD +H+G E R++ + FL Q +I H+
Sbjct: 462 DDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVFLD-FRFLEQ--KIR--HDSTAWN 515
Query: 489 EEGTFEDLSNNGELFQK-LMENAGKMEEYVEEKED 522
G+ + + ++ + +N K E V D
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-15
Identities = 58/246 (23%), Positives = 103/246 (41%), Gaps = 49/246 (19%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 344
I ++N + K + L N+N++I G I+G +G GKT+ + ++ L S
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMR-IIAGLDVPSTGE 61
Query: 345 AVIRGTV------AYVP----QVSWIF-------NATVRDNILFG------SAFE-PARY 380
+ VP ++ +F N T +NI F S E R
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 381 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 440
E+ + + H L+ P +SG Q+QRV++ARA+ + + + D+P S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 441 LDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTF 493
LDA + R + G T ++V+ + + DR+ ++ +G + + G
Sbjct: 171 LDARMRDSA-----RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKP 225
Query: 494 EDLSNN 499
EDL +N
Sbjct: 226 EDLYDN 231
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 6e-09
Identities = 61/266 (22%), Positives = 110/266 (41%), Gaps = 67/266 (25%)
Query: 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----ELE 963
I ++V ++ L ++ I ++ GI+G +GAGK+ T RI+
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKT----TFMRIIAGLDVPS 58
Query: 964 RGRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEA 1018
G + D +A G + + RKI G++ Q+ L+ T N+ F
Sbjct: 59 TGELYFDDRLVASNGKLIVPPEDRKI-GMVFQTWALYPNLTAFENI-AF----------P 106
Query: 1019 LERAHL-KDAIRRNSLGLDAQVSEAGE-------------NFSVGQRQLLSLSRALLRRS 1064
L + K+ IR+ +V E + S Q+Q ++L+RAL++
Sbjct: 107 LTNMKMSKEEIRK-------RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDP 159
Query: 1065 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDR 1112
+L+LDE + + DA ++ + R K + RL T++ D DR
Sbjct: 160 SLLLLDEPFSNL----DARMRDSARALVKE-----VQSRLGVTLLVVSHDPADIFAIADR 210
Query: 1113 ILLLDSGRVLEYDTPEELLSNEGSSF 1138
+ +L G++++ PE+L N S
Sbjct: 211 VGVLVKGKLVQVGKPEDLYDNPVSIQ 236
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-14
Identities = 59/226 (26%), Positives = 94/226 (41%), Gaps = 53/226 (23%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 359
NINL I G +A++G +G GK++L+ + + + V +P V
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLY-TIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL 79
Query: 360 IF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 405
+F + TV NI F + + + + L+ P
Sbjct: 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW------- 132
Query: 406 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------ 459
+SGGQ+QRV++ARA+ +V + D+PLS LDA + +V R EL
Sbjct: 133 ----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEV-----RAELKRLQKEL 183
Query: 460 GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 499
G T V VT H Q DRI ++ EG + + GT +++
Sbjct: 184 GITTVYVT---H--DQAEALAMADRIAVIREGEILQVGTPDEVYYK 224
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 2e-14
Identities = 61/251 (24%), Positives = 109/251 (43%), Gaps = 51/251 (20%)
Query: 275 NPPLTSGLPAISIRNGY--FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 332
+ G I + +++ + ++ I G +V ++G +G GKT+++
Sbjct: 5 HHHHHHGSMTIEFVGVEKIYPGGARS----VRGVSFQIREGEMVGLLGPSGSGKTTILR- 59
Query: 333 MLGELPPVSDASAVIRGT-VAYVP----QVSWIF-------NATVRDNILFG-------S 373
++ L + I G V +P V +F + TV DN+ FG
Sbjct: 60 LIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPK 119
Query: 374 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVF 432
AR + + L+ R + +SGGQ+QRV++ARA+ V
Sbjct: 120 DEMDARVRELLRFMRLES------------YANRFPHELSGGQQQRVALARALAPRPQVL 167
Query: 433 IFDDPLSALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEG 485
+FD+P +A+D + R++ R + G T V VT +Q L DR++++HEG
Sbjct: 168 LFDEPFAAIDTQIRREL-----RTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEG 222
Query: 486 MVKEEGTFEDL 496
V++ GT E++
Sbjct: 223 NVEQFGTPEEV 233
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 64/250 (25%), Positives = 110/250 (44%), Gaps = 51/250 (20%)
Query: 905 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV---- 960
S +I+F V Y + G+SF I + VG++G +G+GK+ T+ R++
Sbjct: 11 GSMTIEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKT----TILRLIAGLE 65
Query: 961 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNL-------DPFSEHSD 1012
+G + I G + R + G++ Q+ LF TV N+ + D
Sbjct: 66 RPTKGDVWIGGKRVTDLPPQK-RNV-GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD 123
Query: 1013 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 1072
A + E L L+ R ++S G GQ+Q ++L+RAL R ++L+ DE
Sbjct: 124 ARVRELLRFMRLESYANRFP----HELS--G-----GQQQRVALARALAPRPQVLLFDEP 172
Query: 1073 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDRILLLDSGR 1120
AA+ D I++ +R + + + T + D DR+L+L G
Sbjct: 173 FAAI----DTQIRRELRTFVRQ-----VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGN 223
Query: 1121 VLEYDTPEEL 1130
V ++ TPEE+
Sbjct: 224 VEQFGTPEEV 233
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 5e-14
Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 54/232 (23%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--P----------PVSDAS----AV 346
L N+NL+I G V+I+G +G GK+++++ ++G L P +D
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 347 IRG-TVAYVPQVSWIFN----ATVRDN-----ILFGSAFEPA--RYEKAIDVTSLQHDLD 394
IR + +V Q FN T +N I R ++A++ L
Sbjct: 80 IRRDKIGFVFQQ---FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC------LK 130
Query: 395 LLPGGDVTEIGERGVN-----ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 449
+ E+ ER N +SGGQ+QRV++ARA+ +N + + D P ALD+ G ++
Sbjct: 131 MA------ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKI 184
Query: 450 FDRCIRGEL---SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 498
+ +L GKT V+VT+ ++ +RII + +G V+ E +
Sbjct: 185 MQ--LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFDD 234
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 35/237 (14%)
Query: 909 IKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
+K ++V Y+ E+ L ++ I + V I+G +G+GKS+MLN + + + G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 967 ILIDGFDIAKFG---LMDLR-KILGIIPQSPVLFSGTVRFNLDP-------------FSE 1009
+ ID L +R +G + Q FNL P F
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQ---------FNLIPLLTALENVELPLIFKY 112
Query: 1010 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN-FSVGQRQLLSLSRALLRRSKILV 1068
E +RA + ++ L+ + + N S GQ+Q ++++RAL I++
Sbjct: 113 RGAMSGEERRKRA--LECLKM--AELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL 168
Query: 1069 LDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1123
D+ T A+D +T I + +++ E T++++ H +N +RI+ L G V
Sbjct: 169 ADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 7e-14
Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 53/226 (23%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 359
+NL I G + ++G +G GKT+ + M+ L ++ V Y+P +S
Sbjct: 29 KLNLTIKDGEFLVLLGPSGCGKTTTLR-MIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87
Query: 360 IF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 405
+F + TV +NI F R A ++ ++ L+ P
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------- 140
Query: 406 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------ 459
+SGGQ+QRV++ARA+ DV + D+PLS LDA + + R E+
Sbjct: 141 ----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM-----RAEIKKLQQKL 191
Query: 460 GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 499
T + VT H QV DRI +++ G + + G+ ++
Sbjct: 192 KVTTIYVT---H--DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-13
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 53/226 (23%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 359
++ ++ G VA++G +G GKT+ + ML + + V +P +V
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLL-MLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM 79
Query: 360 IF-------NATVRDNILFG--SAFEP-----ARYEKAIDVTSLQHDLDLLPGGDVTEIG 405
+F + TV +NI F + R + + + LD P
Sbjct: 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT------- 132
Query: 406 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------ 459
+SGGQ+QRV++ARA+ V +FD+PLS LDA++ + R E+
Sbjct: 133 ----QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIM-----RAEIKHLQQEL 183
Query: 460 GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 499
G T V VT H Q RI + ++G + + GT +++ ++
Sbjct: 184 GITSVYVT---H--DQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 1e-13
Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 47/218 (21%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--P----------PVSDAS----AV 346
L I+L + G V+I+G +G GK++L+ +LG L P V + ++
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 347 IR-GTVAYVPQVSWIFN----ATVRDNI----LFGSAFEPARYEKAIDVTS---LQHDLD 394
+R + +V Q T +N+ L + E+ + S L L
Sbjct: 79 LRNRKLGFVFQF---HYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS 135
Query: 395 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 454
P +SGG++QRV++ARA+ + + D+P LD+ ++V D I
Sbjct: 136 RKPY-----------ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD--I 182
Query: 455 RGEL--SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 490
++ G + V+VT++ R + + +G V E
Sbjct: 183 FLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 1e-11
Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 40/235 (17%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ E++ R +L G+S ++ + V I+G +G+GKS++L L + G++
Sbjct: 5 LRAENIKKVIRGY--EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 969 IDGFDIAKFG---LMDLR-KILGIIPQSPVLFSGTVRFNLDP-------------FSEHS 1011
++G ++ L LR + LG + Q L P
Sbjct: 63 LEGKEVDYTNEKELSLLRNRKLGFVFQF---------HYLIPELTALENVIVPMLKMGKP 113
Query: 1012 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1071
EA ER + + LGL ++S S G++Q ++++RAL +L DE
Sbjct: 114 KK---EAKERG--EYLLSE--LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADE 166
Query: 1072 ATAAVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1123
T +D + I E +++++ H R L + G+V+
Sbjct: 167 PTGNLDSANTKRVMDIFLKINEGGT--SIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 2e-13
Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 45/221 (20%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAVIRGTVAYVP----Q 356
+I+L + G ++ I+G +G GKT+L+ + G P +S + I +P +
Sbjct: 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81
Query: 357 VSWIF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVT 402
+ ++ + TV NI +G +A E R E +++T + P
Sbjct: 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH---- 137
Query: 403 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL---- 458
+SGGQ+QR ++ARA+ + ++ + D+P SALD + RQ IR ++
Sbjct: 138 -------ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQ-----IREDMIAAL 185
Query: 459 --SGKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
+GK+ V V+ ++ L DRI ++ +G + + + +L
Sbjct: 186 RANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 1e-10
Identities = 55/253 (21%), Positives = 106/253 (41%), Gaps = 56/253 (22%)
Query: 906 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----E 961
+ ++ + ++ PVL+ +S ++ P + + I+G +G GK+ TL R + +
Sbjct: 2 TAALHIGHLSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKT----TLLRCLAGFEQ 55
Query: 962 LERGRILIDGFDIAKFGLM---DLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDA 1013
+ G I + G I R++ G + Q VLF + + L + A
Sbjct: 56 PDSGEISLSGKTIFSKNTNLPVRERRL-GYLVQEGVLFPHLTVYRNIAYGL-GNGKGRTA 113
Query: 1014 DLW----EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 1069
LE + + R ++S G GQ+Q +L+RAL ++++L
Sbjct: 114 QERQRIEAMLELTGISELAGR----YPHELS--G-----GQQQRAALARALAPDPELILL 162
Query: 1070 DEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDRILLLD 1117
DE +A+D + +++ IRE+ + + + D DRI ++
Sbjct: 163 DEPFSALDEQ----LRRQIREDMIA-----ALRANGKSAVFVSHDREEALQYADRIAVMK 213
Query: 1118 SGRVLEYDTPEEL 1130
GR+L+ +P EL
Sbjct: 214 QGRILQTASPHEL 226
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 5e-13
Identities = 59/230 (25%), Positives = 111/230 (48%), Gaps = 40/230 (17%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDL 982
VL G++ I + V ++G +G+GKS+ L L + + + G I+IDG ++ L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 983 RKILGIIPQSPVLFSGTVRFNLDPFSEH-------SDADLW-------EALERAHLKDAI 1028
R+ +G++ Q FNL P H + A + +A +A + +
Sbjct: 99 REEVGMVFQR---------FNLFP---HMTVLNNITLAPMKVRKWPREKAEAKA--MELL 144
Query: 1029 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD---VRTDALIQ 1085
+ +GL + ++ S GQ Q ++++RAL KI++ DE T+A+D V + L
Sbjct: 145 DK--VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG-EVL-- 199
Query: 1086 KTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
+++ TM+++ H + + DR+L +D G ++E PE+L
Sbjct: 200 SVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 8e-13
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 33/220 (15%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDASAVIR 348
L IN+ I G +V ++G +G GK++ + + L +R
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99
Query: 349 GTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
V V Q FN TV +NI P + K + ++LL D +
Sbjct: 100 EEVGMVFQR---FNLFPHMTVLNNITLA----PMKVRKWPREKAEAKAMELL---DKVGL 149
Query: 405 GERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 460
++ ++SGGQ QRV++ARA+ + +FD+P SALD + +V + G
Sbjct: 150 KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209
Query: 461 KTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
T V+VT+++ F +V DR++ + G + EEG EDL +
Sbjct: 210 MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 7e-13
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 40/215 (18%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 359
N++L + G I+G TG GKT + ++ ++ G V + +++
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLE-LIAGFHVPDSGRILLDGKDVTDLSPEKHDIAF 76
Query: 360 IF-------NATVRDNILFG----SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 408
++ + V+ N+ FG +P R ++H LD P
Sbjct: 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL---------- 126
Query: 409 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------GKT 462
+SGG++QRV++ARA+ +N + + D+PLSALD R LS T
Sbjct: 127 -TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA-----REMLSVLHKKNKLT 180
Query: 463 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
+ +T +Q DRI +V +G + + G E++
Sbjct: 181 VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 59/251 (23%), Positives = 103/251 (41%), Gaps = 66/251 (26%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----ELER 964
I+ E + +++ L LS + + I+G TGAGK+ ++ +
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKT----LFLELIAGFHVPDS 54
Query: 965 GRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-TVRFNL--------DPFSEHS 1011
GRIL+DG D+ DL I + Q+ LF V+ NL +
Sbjct: 55 GRILLDGKDVT-----DLSPEKHDI-AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRV 108
Query: 1012 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1071
+ ++ + RN +S G G++Q ++L+RAL+ KIL+LDE
Sbjct: 109 L----DTARDLKIEHLLDRNP----LTLS--G-----GEQQRVALARALVTNPKILLLDE 153
Query: 1072 ATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDRILLLDSG 1119
+A+D R Q+ RE + + T++ D DRI ++ G
Sbjct: 154 PLSALDPR----TQENAREMLSV-----LHKKNKLTVLHITHDQTEARIMADRIAVVMDG 204
Query: 1120 RVLEYDTPEEL 1130
++++ PEE+
Sbjct: 205 KLIQVGKPEEI 215
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-12
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 59/232 (25%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTV-------AYVP-- 355
++L++ G + ++G +G GKT+ + M+ L S I + +VP
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLR-MIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79
Query: 356 --QVSWIF-------NATVRDNILFG------SAFE-PARYEKAIDVTSLQHDLDLLPGG 399
++ +F + TV DNI F E R + ++ L L+ P
Sbjct: 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR- 138
Query: 400 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 459
+SGGQ+QRV++ RA+ VF+ D+PLS LDA + ++ R EL
Sbjct: 139 ----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM-----RAELK 183
Query: 460 ------GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 499
G T + VT H QV DRI +++ G++++ G+ +++ +
Sbjct: 184 KLQRQLGVTTIYVT---H--DQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 3e-12
Identities = 43/205 (20%), Positives = 76/205 (37%), Gaps = 31/205 (15%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
+L+ + + + GI G G GKS TL R I + F +
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKS----TLMRA---------IANGQVDGFPTQEEC 495
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL-DAQVSEA 1042
+ + + S T LD + + L G D ++
Sbjct: 496 RTVYVEHDIDGTHSDTSV--LD--FVFESGVGTKEAIKDKL------IEFGFTDEMIAMP 545
Query: 1043 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAH 1102
S G + L+L+RA+LR + IL+LDE T +D A + + T + I+H
Sbjct: 546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISH 603
Query: 1103 R---LNTIIDCDRILLLDSGRVLEY 1124
L+ + C+ I+ + ++ +Y
Sbjct: 604 DSVFLDNV--CEYIINYEGLKLRKY 626
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 4e-09
Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 14/146 (9%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 358
+ L L + I G G GK++L+ A+ R YV
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECR--TVYVEHDI 504
Query: 359 WIFNA--TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 416
++ +V D + + L G I +SGG K
Sbjct: 505 DGTHSDTSVLDFVFESGVGTKEAIKDK---------LIEF-GFTDEMIAMPISALSGGWK 554
Query: 417 QRVSMARAVYSNSDVFIFDDPLSALD 442
++++ARAV N+D+ + D+P + LD
Sbjct: 555 MKLALARAVLRNADILLLDEPTNHLD 580
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 2e-06
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
Query: 1009 EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG--ENFSVGQRQLLSLSRALLRRSKI 1066
E + + L R +++ LGLD ++ S GQ+ L L+ +R +
Sbjct: 865 EALASGQFRPLTRKEIEEHCSM--LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHL 922
Query: 1067 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR---LNTIIDCDRILLLDSGRVLE 1123
+VLDE T +D + + K ++ EF+ ++II H + + + + GR+
Sbjct: 923 IVLDEPTNYLDRDSLGALSKALK-EFE-GGVIIITHSAEFTKNL--TEEVWAVKDGRMTP 978
Query: 1124 YD 1125
Sbjct: 979 SG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 6e-06
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 967
+K ++ +Y P + ++F S ++ ++G GAGKS+++N L + G +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 2e-05
Identities = 33/229 (14%), Positives = 75/229 (32%), Gaps = 16/229 (6%)
Query: 259 KRMEEFLLAEEKILLPNPPLTSGL-----PAISIRNGYFSWDSKAERPTLLNINLDIPVG 313
K EE + + P P G+ + + N F + +P + +IN +
Sbjct: 641 KAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGT-SKPQITDINFQCSLS 699
Query: 314 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---VAYVPQVSWIFNATVRDNIL 370
S +A++G G GK++LI+ + GEL P + V +AY+ Q + ++ L
Sbjct: 700 SRIAVIGPNGAGKSTLINVLTGELLP--TSGEVYTHENCRIAYIKQHA----FAHIESHL 753
Query: 371 FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 430
+ E ++ D + + G +R++ + +
Sbjct: 754 DKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKN 813
Query: 431 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 479
+ ++ + + + + + V +
Sbjct: 814 TYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVE-SHSKMVAEV 861
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 410 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ 469
+SGGQK ++ +A + + + D+P + LD + ++ E G +++T+
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRD-SLGALSKALK-EFEG-GVIIITHS 957
Query: 470 LHFLSQV-DRIILVHEGMVK 488
F + + + V +G +
Sbjct: 958 AEFTKNLTEEVWAVKDGRMT 977
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 49/234 (20%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLI------------------------SAMLGELP 338
L ++L G +++I+G +G GK++ + G+L
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81
Query: 339 PVSDAS-AVIRGTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDL 393
++R + V Q FN TV +N++ P + + + L
Sbjct: 82 VADKNQLRLLRTRLTMVFQH---FNLWSHMTVLENVMEA----PIQVLGLSKHDARERAL 134
Query: 394 DLLPGGDVTEIGERG-----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 448
L I ER V++SGGQ+QRVS+ARA+ DV +FD+P SALD + +
Sbjct: 135 KYL---AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 191
Query: 449 VFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
V ++ +L GKT V+VT+++ F V +I +H+G ++EEG E + N
Sbjct: 192 VLR-IMQ-QLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 6e-11
Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 54/243 (22%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD--- 981
VL G+S D + I+G +G+GKS+ L + + + G I+++G +I D
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 982 ----------LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE---------RA 1022
LR L ++ Q FNL +S + LE
Sbjct: 81 KVADKNQLRLLRTRLTMVFQH---------FNL--WSHMT------VLENVMEAPIQVLG 123
Query: 1023 HLKDAIRRNSLGLDAQV--SEAGENF-----SVGQRQLLSLSRALLRRSKILVLDEATAA 1075
K R +L A+V E + S GQ+Q +S++RAL +L+ DE T+A
Sbjct: 124 LSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 183
Query: 1076 VD---VRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1130
+D V + L + +++ + TM+++ H + ++ L G++ E PE++
Sbjct: 184 LDPELVG-EVL--RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
Query: 1131 LSN 1133
N
Sbjct: 241 FGN 243
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 4e-11
Identities = 68/226 (30%), Positives = 101/226 (44%), Gaps = 67/226 (29%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSL---------ISAMLGELP----PVSDASAVIRGTV 351
+INLDI G V VG +G GK++L I++ G+L ++D RG V
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS--GDLFIGEKRMNDTPPAERG-V 77
Query: 352 AYVPQVSWIFN-A-----TVRDNILFG--SAFEP-----ARYEKAIDVTSLQHDLDLLPG 398
V Q + A +V +N+ FG A R + +V L H LD P
Sbjct: 78 GMVFQ-----SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK 132
Query: 399 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 458
+SGGQ+QRV++ R + + VF+ D+PLS LDA + Q+ R E+
Sbjct: 133 -----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM-----RIEI 176
Query: 459 S------GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGT 492
S G+T + VT H QV D+I+++ G V + G
Sbjct: 177 SRLHKRLGRTMIYVT---H--DQVEAMTLADKIVVLDAGRVAQVGK 217
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 412 SGGQKQRVSMA------RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL 465
SGG++ + +A + + I D+P LD R++ R +L
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309
Query: 466 VTNQLHFLSQVDRIILVHEGMVKEEGT 492
V++ D +I + E G+
Sbjct: 310 VSHDEELKDAADHVIRIS----LENGS 332
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1293 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-77 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-56 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-74 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 8e-54 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-70 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-47 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-68 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-53 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-65 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-49 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 9e-62 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-61 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-38 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-27 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-37 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-37 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 7e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-35 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-26 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-35 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-25 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-34 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-32 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-24 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-31 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-21 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 7e-31 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-25 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-30 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-23 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-30 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-26 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-28 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-21 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-27 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-19 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-22 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-06 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 3e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-05 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 1e-05 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 3e-04 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 5e-05 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 3e-04 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 253 bits (648), Expect = 3e-77
Identities = 83/246 (33%), Positives = 140/246 (56%), Gaps = 2/246 (0%)
Query: 900 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 959
P G I + V +Y P+L ++ +I + V VG +G GKS+++N + R
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 67
Query: 960 VELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL-DPFSEHSDADLWEA 1018
++ G+ILIDG +I F LR +G++ Q +LFS TV+ N+ +D ++ EA
Sbjct: 68 YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEA 127
Query: 1019 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1078
+ A+ D I G D +V E G S GQ+Q LS++R L IL+LDEAT+A+D+
Sbjct: 128 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 187
Query: 1079 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
++++IQ+ + K T LI+AHRL+TI D+I+++++G ++E T EL++ +G ++
Sbjct: 188 ESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQG-AY 246
Query: 1139 SKMVQS 1144
+
Sbjct: 247 EHLYSI 252
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 194 bits (495), Expect = 2e-56
Identities = 71/246 (28%), Positives = 118/246 (47%), Gaps = 15/246 (6%)
Query: 276 PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 335
P+ I I + F ++ E P L +INL I G VA VG +G GK++LI+ +
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 66
Query: 336 ELPPVSDA------------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEP-ARYEK 382
S + +R + V Q + +F+ TV++NIL G +
Sbjct: 67 FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVE 126
Query: 383 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442
A + + + LP G TE+GERGV +SGGQKQR+S+AR +N + I D+ SALD
Sbjct: 127 AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 186
Query: 443 AHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGEL 502
+ + + +T ++V ++L ++ D+I+++ G + E GT +L
Sbjct: 187 LESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGA 245
Query: 503 FQKLME 508
++ L
Sbjct: 246 YEHLYS 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 244 bits (625), Expect = 3e-74
Identities = 86/241 (35%), Positives = 141/241 (58%), Gaps = 3/241 (1%)
Query: 906 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 965
+G ++F +V Y P L ++ IP V +VGR+G+GKS++ + + R +++ G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 966 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN--LDPFSEHSDADLWEALERAH 1023
IL+DG D+ ++ L LR + ++ Q+ LF+ TV N E+S + EA A+
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
Query: 1024 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1083
D I + GLD + E G S GQRQ ++++RALLR S IL+LDEAT+A+D ++
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190
Query: 1084 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1143
IQ + E K+ T L+IAHRL+TI D I++++ G ++E T ELL+ G ++++ +
Sbjct: 191 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG-VYAQLHK 249
Query: 1144 S 1144
Sbjct: 250 M 250
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 186 bits (474), Expect = 8e-54
Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 16/239 (6%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 343
+ RN F++ + E P L NINL IP G VA+VG +G GK+++ S +
Sbjct: 13 DLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 344 SAV------------IRGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYEKAIDVTSL 389
+ +R VA V Q +FN TV +NI + + + E+A +
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 131
Query: 390 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 449
++ + G T IGE GV +SGGQ+QR+++ARA+ +S + I D+ SALD R +
Sbjct: 132 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 450 FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 508
+ +T +++ ++L + Q D I++V +G++ E GT +L ++ +L +
Sbjct: 192 QA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 249
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 231 bits (591), Expect = 8e-70
Identities = 81/237 (34%), Positives = 140/237 (59%), Gaps = 1/237 (0%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDA 1027
IDG D+A LR+ +G++ Q VL + ++ N+ + S + A + A D
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1028 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1087
I G + V E G S GQRQ ++++RAL+ KIL+ DEAT+A+D ++ +I +
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1088 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1144
+ + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 166 bits (421), Expect = 7e-47
Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 18/239 (7%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 344
I+ RN F + L NINL I G ++ IVG +G GK++L + P +
Sbjct: 2 ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQ 59
Query: 345 AVIRGT-------------VAYVPQVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSLQ 390
+I G V V Q + + N ++ DNI + + A +
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 391 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 450
+ L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD +
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 451 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL-SNNGELFQKLME 508
+ G+T +++ ++L + DRII++ +G + E+G ++L S L+ L +
Sbjct: 180 RN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 227 bits (581), Expect = 3e-68
Identities = 73/248 (29%), Positives = 135/248 (54%), Gaps = 8/248 (3%)
Query: 903 WPSSGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 960
G ++F+DV Y RP+ VL GL+FT+ P + +VG G+GKS++ L +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPD-VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64
Query: 961 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL--DPFSEHSDADLWEA 1018
+ G++L+DG + ++ L + + + Q P +F +++ N+ + + ++ A
Sbjct: 65 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAA 124
Query: 1019 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1078
++ I G D +V EAG S GQRQ ++L+RAL+R+ +L+LD+AT+A+D
Sbjct: 125 AVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 184
Query: 1079 RTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 1136
+ +++ + E E S ++L+I L+ + D IL L+ G + E T ++L+ +G
Sbjct: 185 NSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKG- 243
Query: 1137 SFSKMVQS 1144
+ MVQ+
Sbjct: 244 CYWAMVQA 251
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 184 bits (468), Expect = 5e-53
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 15/240 (6%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 343
+ ++ F++ ++ + L + + G + A+VG G GK+++ + + P
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70
Query: 344 ------------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE--KAIDVTSL 389
+ VA V Q +F ++++NI +G +P E A +
Sbjct: 71 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 390 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 449
+ LP G TE+ E G +SGGQ+Q V++ARA+ V I DD SALDA+ QV
Sbjct: 131 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 190
Query: 450 FDRCIR-GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 508
E ++ +L+T L + Q D I+ + G ++E GT + L + +++
Sbjct: 191 EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQ 250
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 218 bits (558), Expect = 3e-65
Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 4/238 (1%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
+ V Y + +L +SF P+ + G +G GKS++ + L R + G I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE--HSDADLWEALERAHLKD 1026
IDG I L + R +G + Q + +GT+R NL E ++D DLW+ L+ A +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1027 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1086
+ L+ +V E G S GQRQ L+++RA LR KIL+LDEATA++D +++++QK
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 1087 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1144
+ K T L+IAHRL+TI+D D+I ++ G++ EL++ ++K V
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHP-LYAKYVSE 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 173 bits (439), Expect = 3e-49
Identities = 58/238 (24%), Positives = 116/238 (48%), Gaps = 17/238 (7%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 339
+S R+ F++D L +I+ + S++A G +G GK+++ S + P
Sbjct: 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 340 ------VSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQ 390
+ + S R + +V Q S I T+R+N+ +G + + +D+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 391 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 450
++ +P TE+GERGV ISGGQ+QR+++ARA N + + D+ ++LD+ V
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 451 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 508
+ + + G+T +++ ++L + D+I + +G + G +L L+ K +
Sbjct: 180 -KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 210 bits (536), Expect = 9e-62
Identities = 90/268 (33%), Positives = 145/268 (54%), Gaps = 3/268 (1%)
Query: 256 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNG--YFSWDSKAERPTLLNINLDIPVG 313
+ ++ + F LL ++G S FS P L NINL+I G
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKG 62
Query: 314 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGS 373
++AI G TG GKTSL+ +LGEL S+ G V++ Q SWI T+++NI+FG
Sbjct: 63 EMLAITGSTGSGKTSLLMLILGELEA-SEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGV 121
Query: 374 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 433
+++ RY+ + LQ D+ D T +GE GV +SGGQ+ R+S+ARAVY ++D+++
Sbjct: 122 SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYL 181
Query: 434 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 493
D P LD QVF+ C+ ++ KTR+LVT+++ L + D+I+++H+G GTF
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTF 241
Query: 494 EDLSNNGELFQKLMENAGKMEEYVEEKE 521
+L + F + +++ EE+
Sbjct: 242 SELQSLRPDFSSKLMGYDTFDQFTEERR 269
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 208 bits (530), Expect = 5e-61
Identities = 56/261 (21%), Positives = 108/261 (41%), Gaps = 21/261 (8%)
Query: 885 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGR 944
EL + +SN ++ F + L P VL ++ I + + I G
Sbjct: 18 ELLEKVQ---QSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLNIEKGEMLAITGS 70
Query: 945 TGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 1004
TG+GK+S+L + +E G I G + Q + GT++ N+
Sbjct: 71 TGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENI 117
Query: 1005 DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1064
+ + ++ L+ I + + + + E G S GQR +SL+RA+ + +
Sbjct: 118 IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177
Query: 1065 KILVLDEATAAVDVRT-DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1123
+ +LD +DV T + + + + + + T +++ ++ + D+IL+L G
Sbjct: 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYF 237
Query: 1124 YDTPEELLSNEGSSFSKMVQS 1144
Y T EL S SK++
Sbjct: 238 YGTFSELQSLRPDFSSKLMGY 258
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 140 bits (354), Expect = 7e-38
Identities = 49/236 (20%), Positives = 108/236 (45%), Gaps = 12/236 (5%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
+K E++ R+ ++ L+ TI + + ++G +G GK++ L + + E GRI
Sbjct: 7 VKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 1027
D+ L + + ++ QS ++ TV N+ + E +R + A
Sbjct: 65 FGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV--RWA 120
Query: 1028 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1087
L ++ ++ S GQRQ ++++RA++ +L++DE + +D + ++
Sbjct: 121 AEL--LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE 178
Query: 1088 IRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140
I++ + T + + H + DRI +++ G++L+ +P E+ S F
Sbjct: 179 IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 234
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 109 bits (274), Expect = 3e-27
Identities = 51/238 (21%), Positives = 101/238 (42%), Gaps = 38/238 (15%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 343
+ + N + + +NL I G + ++G +G GKT+ + + G P ++
Sbjct: 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-TEG 61
Query: 344 SAVIRGT-----------VAYVPQVSWIF-NATVRDNILFGSAFE-------PARYEKAI 384
++ V Q ++ + TV +NI F + R A
Sbjct: 62 RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 385 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 444
++ ++ L+ P +SGGQ+QRV++ARA+ DV + D+PLS LDA
Sbjct: 122 ELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170
Query: 445 VGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
+ + + ++ +L T + VT+ + DRI +++ G + + G+ ++
Sbjct: 171 LRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 138 bits (350), Expect = 2e-37
Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 28/237 (11%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ +DV R L LS + + + +VG GAGKS++L + + +G I
Sbjct: 4 MQLQDVAESTR------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQ 56
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSP-VLFSGTVRFNLDPF-SEHSDADLWEALERAHLKD 1026
G + + L + Q F+ V L + + +L + A
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA---- 112
Query: 1027 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR-------RSKILVLDEATAAVDVR 1079
L LD ++ + S G+ Q + L+ +L+ ++L+LDE ++DV
Sbjct: 113 ------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166
Query: 1080 TDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
+ + K + + +++ +H LN + R LL G++L EE+L+
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 91.9 bits (228), Expect = 3e-21
Identities = 43/227 (18%), Positives = 78/227 (34%), Gaps = 33/227 (14%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDASAV- 346
AE L ++ ++ G ++ +VG G GK++L++ M G P+ SA
Sbjct: 10 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK 69
Query: 347 IRGTVAYVPQVSWI-FNATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 403
+ AY+ Q F V + +L L
Sbjct: 70 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN----- 124
Query: 404 IGERGVNISGGQKQRVSMARAVYS-------NSDVFIFDDPLSALDAHVGRQVFDRCIRG 456
+SGG+ QRV +A V + + D+P+++LD +
Sbjct: 125 ------QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 457 ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGEL 502
G V+ ++ L+ + R L+ G + G E++ L
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNL 225
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 138 bits (348), Expect = 3e-37
Identities = 60/241 (24%), Positives = 118/241 (48%), Gaps = 13/241 (5%)
Query: 909 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
IK ++ + + L+ +S +P G++G +GAGKS+++ + + G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 967 ILIDGFDIAKFGLMD---LRKILGIIPQSPVLF-SGTVRFNLDPFSEHSDADLWEALERA 1022
+L+DG ++ + R+ +G+I Q L S TV N+ E + E R
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1023 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1082
+ + +GL + N S GQ+Q ++++RAL K+L+ DEAT+A+D T
Sbjct: 122 --TELLSL--VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177
Query: 1083 LIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1139
I + +++ T+L+I H ++ + CD + ++ +G ++E DT E+ S+ + +
Sbjct: 178 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLA 237
Query: 1140 K 1140
+
Sbjct: 238 Q 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 102 bits (256), Expect = 7e-25
Identities = 52/241 (21%), Positives = 99/241 (41%), Gaps = 37/241 (15%)
Query: 285 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 341
I + N + L N++L +P G + ++G +G GK++LI + P
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 342 -------------DASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFE-------PARY 380
R + + Q + + + TV N+ + R
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 381 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 440
+ + + L D P N+SGGQKQRV++ARA+ SN V + D+ SA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 441 LDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSN 498
LD R + + G T +L+T+++ + ++ D + ++ G + E+ T ++ +
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 499 N 499
+
Sbjct: 231 H 231
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 132 bits (333), Expect = 3e-35
Identities = 53/235 (22%), Positives = 112/235 (47%), Gaps = 10/235 (4%)
Query: 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
G++ +D+ R + +L G+SF I + G++G GAGK++ L + +++ G
Sbjct: 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 967 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 1025
+ + G ++ ++RK++ +P+ + L + + E E +
Sbjct: 59 VTVFGKNV-VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMV--E 115
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1085
A GL ++ + +S G + L ++RAL+ ++ +LDE T+ +DV ++
Sbjct: 116 RATEI--AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 173
Query: 1086 KTIREEFKSC-TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
K +++ + T+L+ +H + + CDRI L+ +G ++E T EEL +
Sbjct: 174 KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 228
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 105 bits (263), Expect = 6e-26
Identities = 50/251 (19%), Positives = 105/251 (41%), Gaps = 40/251 (15%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 341
A+ +++ ++ L I+ +I G + ++G G GKT+ + + + P S
Sbjct: 2 AVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 342 ---------DASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEP-------ARYEKAI 384
+ +R ++Y+P+ + + N + + F + F E+A
Sbjct: 59 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 118
Query: 385 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 444
++ L + S G +++ +ARA+ N + I D+P S LD
Sbjct: 119 EIAGLGEKIKDRVST-----------YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 167
Query: 445 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN---- 499
R+V + G T ++ ++ + + + DRI L+H G + E GT E+L
Sbjct: 168 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQ 227
Query: 500 --GELFQKLME 508
E+F+++++
Sbjct: 228 NIEEVFEEVVK 238
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 133 bits (335), Expect = 4e-35
Identities = 57/242 (23%), Positives = 106/242 (43%), Gaps = 22/242 (9%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
+ D+ RY VL G+S D + I+G +G+GKS+ L + + + G I+
Sbjct: 3 LHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 969 IDGFDIAKFGLMD-------------LRKILGIIPQSPVLFSG-TVR-FNLDPFSEHSDA 1013
++G +I D LR L ++ Q L+S TV ++ +
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 1014 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 1073
+A ERA + + + AQ S GQ+Q +S++RAL +L+ DE T
Sbjct: 121 SKHDARERA--LKYLAKVGIDERAQGKYPVH-LSGGQQQRVSIARALAMEPDVLLFDEPT 177
Query: 1074 AAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1131
+A+D + + +++ + TM+++ H + ++ L G++ E PE++
Sbjct: 178 SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 237
Query: 1132 SN 1133
N
Sbjct: 238 GN 239
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 104 bits (262), Expect = 2e-25
Identities = 52/244 (21%), Positives = 99/244 (40%), Gaps = 36/244 (14%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 341
+ + + + + L ++L G +++I+G +G GK++ + + P
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 342 ----------------------DASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPA 378
+ ++R + V Q + + TV +N++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 379 RYEKAID--VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 436
+ + + +SGGQ+QRVS+ARA+ DV +FD+
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPVH----LSGGQQQRVSIARALAMEPDVLLFDE 175
Query: 437 PLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFED 495
P SALD + +V + GKT V+VT+++ F V +I +H+G ++EEG E
Sbjct: 176 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQ 235
Query: 496 LSNN 499
+ N
Sbjct: 236 VFGN 239
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 129 bits (327), Expect = 2e-34
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 17/232 (7%)
Query: 909 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
IK ++V Y E+ L ++ I + V I+G +G+GKS+MLN + + + G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 967 ILIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSG-TVRFNLD---PFSEHSDADLWEA 1018
+ ID +L KI +G + Q L T N++ F E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1019 LERAHLKDAIRRNSLGLDAQVSEA-GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1077
+RA + L+ + + S GQ+Q ++++RAL I++ D+ T A+D
Sbjct: 122 RKRALECLKM----AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 1078 VRTDALIQKTIREEFKS--CTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1127
+T I + +++ + T++++ H +N +RI+ L G V +
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 112 bits (281), Expect = 2e-28
Identities = 52/228 (22%), Positives = 102/228 (44%), Gaps = 21/228 (9%)
Query: 285 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 341
I ++N ++ E L N+NL+I G V+I+G +G GK+++++ + P
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 342 --------------DASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDV 386
+ + + R + +V Q + T +N+ F+ +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 387 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 446
+ + + + +SGGQ+QRV++ARA+ +N + + D P ALD+ G
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 447 RQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 492
++ + + E GKT V+VT+ ++ +RII + +G V+ E
Sbjct: 182 EKIMQLLKKLNEED-GKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 124 bits (312), Expect = 3e-32
Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 15/238 (6%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ E++V + L G+S ++ D I+G G+GKS+++N + ++ + GR+
Sbjct: 5 LRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 969 IDGFDIAKFGLMDL-RKILGIIPQSPVLFSG-TVRFNL----DPFSEHSDADLWEALERA 1022
+ DI +L + Q+P TV NL E L+
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 1023 HLKDAIRR-----NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1077
++ + + L L S GQ +L+ + RAL+ K++V+DE A V
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182
Query: 1078 VRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
I + E + K T LII HRL+ +++ D + ++ +G+++ EE + N
Sbjct: 183 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 100 bits (251), Expect = 4e-24
Identities = 38/219 (17%), Positives = 88/219 (40%), Gaps = 24/219 (10%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRGTV 351
+++ + G + I+G G GK++LI+ + G L + + + +
Sbjct: 22 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81
Query: 352 AYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHD--------LDLLPGGDVT 402
Q TV +N+L G ++ +L ++
Sbjct: 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS 141
Query: 403 EIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 461
+ +R +SGGQ + V + RA+ +N + + D+P++ + + +F+ + + G
Sbjct: 142 HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGI 201
Query: 462 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
T +++ ++L + D + ++ G + EG E+ N
Sbjct: 202 TFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 121 bits (305), Expect = 2e-31
Identities = 43/234 (18%), Positives = 100/234 (42%), Gaps = 14/234 (5%)
Query: 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 967
++ DV + + +S + + + ++G +G GK++ L + + E RG+I
Sbjct: 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 968 LIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSGTVRF-NLDPFSEHSDADLWEALERA 1022
I +A + ++ QS L+ + N+ + E +R
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 1023 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1082
++ LGL ++ S GQRQ ++L RA++R+ ++ ++DE + +D +
Sbjct: 121 --REVAEL--LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 1083 LIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
++ +++ T + + H + DRI +++ G + + +P+E+
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 93.1 bits (231), Expect = 2e-21
Identities = 48/232 (20%), Positives = 101/232 (43%), Gaps = 20/232 (8%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 343
+ + + + + E + ++L++ G + ++G +G GKT+ + + G P S
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-SRG 58
Query: 344 SAVIRGTV-------AYVPQVSWIFNATVRDNILF------GSAFEPARYEKAIDVTSLQ 390
I + +VP + L+ + P + K Q
Sbjct: 59 QIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ 118
Query: 391 HDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 449
++ +TE+ R +SGGQ+QRV++ RA+ VF+ D+PLS LDA + ++
Sbjct: 119 RVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 450 FDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
+ G T + VT+ + DRI +++ G++++ G+ +++ +
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 120 bits (301), Expect = 7e-31
Identities = 48/232 (20%), Positives = 109/232 (46%), Gaps = 14/232 (6%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ + + + Y + G+ +P V ++G GAGK++ L+ + +V ++G+I+
Sbjct: 7 LEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 969 IDGFDIAKFGLMDLRKI-LGIIPQSPVLFSG-TVRFNL--DPFSEHSDADLWEALERAHL 1024
+G DI + ++ + ++P+ +F TV NL ++ + LE
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124
Query: 1025 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1084
L ++ + G S G++Q+L++ RAL+ R K+L++DE + + + +
Sbjct: 125 L------FPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 1085 QKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1134
+ I++ + T+L++ + +L++G+++ ELL NE
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 104 bits (262), Expect = 1e-25
Identities = 43/210 (20%), Positives = 82/210 (39%), Gaps = 19/210 (9%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--------------VSDASAVIRGT 350
I+L +P G +V ++G G GKT+ +SA+ G + G
Sbjct: 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83
Query: 351 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 410
TV +N++ G+ + D+ + L + + G
Sbjct: 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE----RLKQLGGT 139
Query: 411 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 470
+SGG++Q +++ RA+ S + + D+P L + +VF+ + G T +LV
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199
Query: 471 HFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
+V ++ G + EG +L +N
Sbjct: 200 LGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 119 bits (299), Expect = 1e-30
Identities = 48/236 (20%), Positives = 94/236 (39%), Gaps = 12/236 (5%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ ++V + V ++ I + V VG +G GKS++L + + + G +
Sbjct: 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF-NLDPFSEHSDADLWEALERAHLKDA 1027
I + + +G++ QS L+ N+ + + A +R
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV--NQV 114
Query: 1028 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1087
L L + + S GQRQ +++ R L+ + +LDE + +D ++
Sbjct: 115 AEV--LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 172
Query: 1088 IRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140
I + TM+ + H + D+I++LD+GRV + P EL F
Sbjct: 173 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 228
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 97.7 bits (243), Expect = 3e-23
Identities = 60/235 (25%), Positives = 102/235 (43%), Gaps = 34/235 (14%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 339
+ ++N +W E +INLDI G V VG +G GK++L+ + G
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 340 -----VSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEP-------ARYEKAIDV 386
+ + V V Q ++ + +V +N+ FG R + +V
Sbjct: 58 FIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 117
Query: 387 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 446
L H LD P +SGGQ+QRV++ R + + VF+ D+PLS LDA +
Sbjct: 118 LQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 166
Query: 447 RQVFDRCIRG-ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
Q+ R + G+T + VT+ + D+I+++ G V + G +L +
Sbjct: 167 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 117 bits (294), Expect = 2e-30
Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 27/214 (12%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
++ D+ + Y PVL ++ TI + V G G GK+++L T+ ++ +G I+
Sbjct: 3 LEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEH-----SDADLWEALERA 1022
+G I ++ + +P+ ++ +V L + + ++ +ALE
Sbjct: 60 YNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 114
Query: 1023 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1082
+ D ++ S G + + L+ LL ++I VLD+ A+D +
Sbjct: 115 EVLDLKKK------------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 162
Query: 1083 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 1116
+ K+I E K ++II+ R CD L
Sbjct: 163 KVLKSILEILKEKGIVIISSREELSY-CDVNENL 195
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 104 bits (260), Expect = 7e-26
Identities = 45/208 (21%), Positives = 93/208 (44%), Gaps = 21/208 (10%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 344
+ IR+ +D +P L I + I G++V G G GKT+L+ + L P+
Sbjct: 3 LEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 345 AV-------IRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 396
++G + ++P+ + +V D + ++ + K +D L
Sbjct: 59 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK-------NEIMDAL 111
Query: 397 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 456
+V ++ ++ +S G +RV +A + N+++++ DDP+ A+D +V I
Sbjct: 112 ESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS-ILE 170
Query: 457 ELSGKTRVLVTNQLHFLSQVDRIILVHE 484
L K V+++++ LS D +H+
Sbjct: 171 ILKEKGIVIISSR-EELSYCDVNENLHK 197
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 112 bits (281), Expect = 2e-28
Identities = 57/240 (23%), Positives = 102/240 (42%), Gaps = 24/240 (10%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I+ E + +++ L LS + + I+G TGAGK+ L + + GRIL
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-----TVRFNLDPFSEHSDADLWEALERAH 1023
+DG D+ L + + + Q+ LF + F + + +
Sbjct: 59 LDGKDVTD--LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 1024 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1083
++ + RN L L S G++Q ++L+RAL+ KIL+LDE +A+D RT
Sbjct: 117 IEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 1084 IQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140
++ + + T+L I H DRI ++ G++++ PEE+
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVA 225
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 93.2 bits (231), Expect = 1e-21
Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 32/232 (13%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 344
I I + W + + L N++L + G I+G TG GKT + + G P S
Sbjct: 2 IEIESLSRKWKNFS----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 345 AVI----------RGTVAYVPQVSWIF-NATVRDNILF----GSAFEPARYEKAIDVTSL 389
+ + +A+V Q +F + V+ N+ F +P R +
Sbjct: 58 LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI 117
Query: 390 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 449
+H LD P + +SGG++QRV++ARA+ +N + + D+PLSALD
Sbjct: 118 EHLLDRNP-----------LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166
Query: 450 FDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
+ + + T + +T+ + DRI +V +G + + G E++
Sbjct: 167 REMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 110 bits (277), Expect = 1e-27
Identities = 49/232 (21%), Positives = 106/232 (45%), Gaps = 11/232 (4%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I ++V ++ L ++ I ++ GI+G +GAGK++ + + + G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 969 IDGFDIAKFGLMDLRKI---LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHL 1024
D +A G + + +G++ Q+ L+ T N+ + E +R
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV-- 121
Query: 1025 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1084
++ + L + ++ S Q+Q ++L+RAL++ +L+LDE + +D R
Sbjct: 122 EEVAKI--LDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
Query: 1085 QKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
+ ++E T+L+++H I DR+ +L G++++ PE+L N
Sbjct: 180 RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 86.7 bits (214), Expect = 2e-19
Identities = 54/241 (22%), Positives = 97/241 (40%), Gaps = 37/241 (15%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 341
I ++N + K + L N+N++I G I+G +G GKT+ + + G P +
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 342 -------------DASAVIRGTVAYVPQ-VSWIFNATVRDNILFG-------SAFEPARY 380
+ V Q + N T +NI F R
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 381 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 440
E+ + + H L+ P +SG Q+QRV++ARA+ + + + D+P S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 441 LDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSN 498
LDA + G T ++V++ + + DR+ ++ +G + + G EDL +
Sbjct: 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
Query: 499 N 499
N
Sbjct: 231 N 231
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 95.5 bits (237), Expect = 2e-22
Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988
+ F + D ++G TGAGKS L + IV+ +RG + ++G DI L R+ +G
Sbjct: 18 VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGF 74
Query: 989 IPQSPVLFSGTVRF--NLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 1046
+PQ LF + + + K LG+ +
Sbjct: 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK-------LGIAHLLDRKPARL 127
Query: 1047 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRL 1104
S G+RQ ++L+RAL+ + ++L+LDE +AVD++T ++ + +R +L + H L
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187
Query: 1105 NTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
D + ++ +GR++E +EL S
Sbjct: 188 IEAAMLADEVAVMLNGRIVEKGKLKELFSA 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 81.2 bits (200), Expect = 1e-17
Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 32/215 (14%)
Query: 304 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVIRGTVA 352
LN++ ++ ++G TG GK+ + + G + P ++ RG +
Sbjct: 16 LNVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRG-IG 73
Query: 353 YVPQVSWIFNA-TVRDNILFGSAFEPA-----RYEKAIDVTSLQHDLDLLPGGDVTEIGE 406
+VPQ +F +V NI +G R + + + H LD P
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-------- 125
Query: 407 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVL 465
+SGG++QRV++ARA+ + + D+PLSA+D + + +
Sbjct: 126 ---RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182
Query: 466 VTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
VT+ L + + D + ++ G + E+G ++L +
Sbjct: 183 VTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 79.3 bits (194), Expect = 2e-17
Identities = 18/186 (9%), Positives = 44/186 (23%), Gaps = 28/186 (15%)
Query: 938 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 997
K+ I G G GK++++ + + + + +I+ + + S
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 998 GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1057
S + +E +
Sbjct: 62 KFFTSKKLVGSYGVNVQYFE----------------------------ELAIPILERAYR 93
Query: 1058 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD 1117
A R K++++DE + ++ + I L
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 1118 SGRVLE 1123
++E
Sbjct: 154 GAVLIE 159
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 53.1 bits (126), Expect = 2e-08
Identities = 21/193 (10%), Positives = 40/193 (20%), Gaps = 21/193 (10%)
Query: 316 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 375
+ I G G GKT+L+ ++ L A V +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 376 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 435
+ + + A V I D
Sbjct: 61 S--------------KFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIID 106
Query: 436 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 495
+ + R I + V V I + ++ E
Sbjct: 107 EIGKMELFSKKFRDLVRQIMHD-PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP--- 162
Query: 496 LSNNGELFQKLME 508
N + + ++
Sbjct: 163 -ENRDVILEDILS 174
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (117), Expect = 3e-07
Identities = 20/171 (11%), Positives = 53/171 (30%), Gaps = 7/171 (4%)
Query: 939 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG 998
V + G G GK+++++ +++ + + + G + + + + S
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 999 TVRFNLDPFS------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1052
D +E L L++A + G V + + +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 1053 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 1103
+ R L ++L + AL+++ + + +R
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKG-KPLALVEEIRNRKDVKVFNVTKENR 173
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 41/266 (15%), Positives = 92/266 (34%), Gaps = 3/266 (1%)
Query: 3 QDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFR-LRSTLVAAVFRKSLRITHEA 61
+ + ++F+ V++ E + L
Sbjct: 53 DEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFY 112
Query: 62 RKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLV 121
N I+ ++ + + L +W III+L +++ +L +
Sbjct: 113 ANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFP 172
Query: 122 FMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRND 181
F R++KLT+E Q + G ++E + + VK +A E++ +
Sbjct: 173 FYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTN 232
Query: 182 ELSWFRKAQFLAACNSFILNSIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRF 239
L+ K A + +N++ + + V+ G + + G +T + +L
Sbjct: 233 FLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFG 292
Query: 240 PLFMLPNMITQVVNANVSLKRMEEFL 265
PL L T + + S+ R+ + +
Sbjct: 293 PLRRLVASFTTLTQSFASMDRVFQLI 318
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 42.2 bits (97), Expect = 3e-04
Identities = 36/327 (11%), Positives = 98/327 (29%), Gaps = 18/327 (5%)
Query: 572 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYS 631
+ + YK + + ++ + + + + Y D +
Sbjct: 6 LQFVKPYK------YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHL 59
Query: 632 LLSFGQVLVTLA---------NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGR 682
++ G L Y +S + + + + F+ N +G+
Sbjct: 60 TIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQ 119
Query: 683 IINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYL 742
+I+R D+ + + ++ ++ + A + + +
Sbjct: 120 VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 743 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLV 802
+ R++ R S + V E + G+S ++++ D A K + L
Sbjct: 180 VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239
Query: 803 NMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTA 862
+ N + + V + + A + T+ + Y + L
Sbjct: 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYL---AISGSITVGTLAAFVGYLELLFGPLRR 296
Query: 863 VLRLASLAENSLNAVERVGNYIELPSE 889
++ + S +++RV I+ +
Sbjct: 297 LVASFTTLTQSFASMDRVFQLIDEDYD 323
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 44.5 bits (103), Expect = 5e-05
Identities = 24/154 (15%), Positives = 48/154 (31%), Gaps = 2/154 (1%)
Query: 118 LLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQN 177
+L + + R + ++K + ++L V + + +
Sbjct: 164 VLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK 223
Query: 178 VRNDELSWFRKAQFLAACNSFILNSIPVLVT--VVSFGMFTLLGGDLTPARAFTSLSLFA 235
V N K ++ + I+ I L V+ F + LT S
Sbjct: 224 VSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMI 283
Query: 236 VLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEE 269
L PL L N+ Q + + + L +E+
Sbjct: 284 ALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 42.2 bits (97), Expect = 3e-04
Identities = 28/318 (8%), Positives = 91/318 (28%), Gaps = 7/318 (2%)
Query: 572 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYS 631
+ ++ +K +++ + L + L D KT +
Sbjct: 8 WPTIAPFK------AGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLV 61
Query: 632 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDL 691
++ + + IS + + + ++
Sbjct: 62 VIGLMILRGITSYISSYCISWVSGKVVMTMRR-RLFGHMMGMPVAFFDKQSTGTLLSRIT 120
Query: 692 GDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREV 751
D ++ + + V + S L ++ S + L++L + + ++
Sbjct: 121 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF 180
Query: 752 KRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLA 811
+ + ++ + A L + + + + + L M +
Sbjct: 181 RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240
Query: 812 IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 871
I I+ + A + + A T+ ++ S + + L ++ + + +
Sbjct: 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 300
Query: 872 NSLNAVERVGNYIELPSE 889
+ A + + ++ E
Sbjct: 301 RGMAACQTLFAILDSEQE 318
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1293 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.98 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.91 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.91 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.9 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.88 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.74 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.71 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.51 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.44 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.34 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.22 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.11 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.93 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.79 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.76 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.52 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.52 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.57 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.48 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.46 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.41 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.1 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.38 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.24 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.12 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.05 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 95.75 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.7 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.69 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.67 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.64 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.58 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.57 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.56 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.51 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.49 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.48 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.36 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.3 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.29 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.27 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.2 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.02 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.0 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.99 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.91 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.82 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.7 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.62 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.45 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.41 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.37 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.37 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.35 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.26 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.23 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.15 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.15 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.14 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.05 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.04 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.0 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.89 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.88 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.88 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.87 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.84 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.73 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.61 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.59 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.48 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.46 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.39 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.39 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.39 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.36 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.36 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.35 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.31 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.26 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.22 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 93.17 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.12 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.09 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.08 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.07 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.02 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 92.84 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 92.83 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.79 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.6 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.6 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 92.6 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 92.56 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.55 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 92.54 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 92.5 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 92.47 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 92.44 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.44 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 92.43 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 92.37 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 92.36 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.34 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 92.34 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.31 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 92.28 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 92.27 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 92.26 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 92.2 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 92.2 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.19 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.14 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 92.02 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.0 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 91.99 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.99 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 91.98 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.94 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 91.92 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 91.91 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 91.85 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.83 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.81 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 91.8 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 91.69 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.58 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.52 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.48 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 91.47 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.46 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 91.45 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 91.41 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.39 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.32 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 91.29 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.26 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 91.1 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.1 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.09 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.08 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.08 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.06 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 91.03 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.02 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 90.98 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 90.9 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 90.85 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 90.84 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 90.84 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.83 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.83 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.8 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.79 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.79 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 90.75 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.74 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 90.7 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.68 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 90.59 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.55 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 90.51 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 90.46 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.37 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 90.35 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.33 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 90.31 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 90.3 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.22 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.21 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.16 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.08 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.07 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 90.02 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.0 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.98 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 89.84 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 89.84 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.8 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 89.78 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 89.76 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 89.72 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 89.63 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 89.62 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.61 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 89.55 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 89.47 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 89.42 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.41 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 89.4 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 89.38 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 89.36 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.29 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.27 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 89.26 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.24 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 89.24 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.19 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 89.17 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.13 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.13 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 89.05 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.97 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 88.91 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.89 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 88.88 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 88.83 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.8 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.78 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 88.77 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 88.75 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 88.71 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 88.69 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 88.68 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.68 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 88.67 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.67 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 88.65 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 88.38 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 88.34 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.32 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.25 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 88.24 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.23 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 88.23 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.1 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 88.03 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.02 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 87.97 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 87.95 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 87.94 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 87.94 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 87.91 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 87.84 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 87.83 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 87.79 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 87.71 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 87.69 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 87.68 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 87.66 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 87.6 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 87.55 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 87.5 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 87.48 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 87.44 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 87.39 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 87.38 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 87.34 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 87.34 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 87.13 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 87.11 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 87.08 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.07 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 87.05 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 87.01 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 87.01 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 86.91 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.89 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 86.89 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 86.88 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 86.87 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.86 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 86.81 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 86.77 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 86.76 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 86.66 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 86.65 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 86.58 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.57 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 86.56 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.54 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 86.52 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 86.49 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 86.48 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 86.45 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 86.4 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 86.38 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 86.36 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 86.36 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 86.32 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 86.31 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 86.29 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.29 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 86.27 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 86.24 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 86.23 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 86.09 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.02 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 86.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 85.94 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 85.91 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 85.87 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.73 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 85.69 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 85.69 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 85.68 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 85.66 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 85.64 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 85.6 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 85.57 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 85.51 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 85.45 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 85.42 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 85.28 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 85.28 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 85.27 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 85.24 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 85.23 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 85.15 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 85.06 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.04 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 85.02 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 84.99 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 84.94 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 84.94 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 84.89 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 84.81 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 84.8 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 84.79 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 84.78 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 84.66 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 84.65 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 84.63 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 84.55 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 84.54 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 84.51 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 84.45 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 84.41 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 84.38 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 84.36 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 84.3 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 84.28 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 84.28 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 84.27 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 84.25 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 84.15 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 84.05 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 84.02 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 83.94 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 83.89 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 83.87 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 83.76 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 83.75 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 83.74 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 83.73 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 83.73 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 83.65 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 83.57 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 83.57 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 83.54 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 83.41 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 83.38 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 83.25 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 83.17 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 83.02 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 83.02 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 83.01 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 82.77 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 82.48 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 82.42 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 82.4 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 82.1 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 82.04 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 81.99 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 81.87 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 81.81 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 81.8 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 81.73 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 81.72 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 81.71 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.64 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.62 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 81.59 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 81.55 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 81.47 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 81.46 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 81.25 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 81.24 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 81.21 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 81.2 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 81.19 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 81.16 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 81.14 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 80.93 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 80.93 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 80.91 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 80.82 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 80.68 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 80.58 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 80.58 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 80.52 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 80.45 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 80.41 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.37 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 80.16 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 80.01 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=449.36 Aligned_cols=237 Identities=34% Similarity=0.550 Sum_probs=226.0
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCE
Q ss_conf 39999889993699998200013896499889999699998899999995277788636999996168989688855016
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.|+|+||+|+|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+..++..++|++|+
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 8726665456567660477999-998789999999309999987159951363129999994589999999985139988
Q 000774 988 IIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1066 (1293)
Q Consensus 988 ~v~Q~~~lf~~ti~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 1066 (1293)
||||++.+|++||++|+.+..+ .++++++++++.+++.+++..+|.++++.+++.|.+||||||||++||||++++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98244655784000352235755438889999999755788876320134432787886698898987544344416513
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
Q ss_conf 998388889999989999999998828947999705931010148899995985866439246640499827899984
Q 000774 1067 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1144 (1293)
Q Consensus 1067 liLDEpts~lD~~t~~~i~~~l~~~~~~~tvi~vsH~~~~~~~~d~v~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 1144 (1293)
||||||||+||+.+++.+++.|++..+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++..+.|.++++.
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 556477655598999999999999858998999978899998499999998999999889999982998789999998
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=449.50 Aligned_cols=240 Identities=34% Similarity=0.561 Sum_probs=226.8
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 99753999988999369999820001389649988999969999889999999527778863699999616898968885
Q 000774 904 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983 (1293)
Q Consensus 904 ~~~~~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 983 (1293)
...|.|+++||+|+|++..+++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+++++...+|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred HHCEEECCCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 5016872666545656766047799-999878999999930999998715995136312999999458999999998513
Q 000774 984 KILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 984 ~~i~~v~Q~~~lf~~ti~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
++|+||||++.+|++||+||+.+.. ..++++++++++.+++.+++..+|.|+++.+++.|.+||||||||++||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 99889983888899999899999999988289479997059310101488999959858664392466404998278999
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1142 (1293)
Q Consensus 1063 ~p~iliLDEpts~lD~~t~~~i~~~l~~~~~~~tvi~vsH~~~~~~~~d~v~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 1142 (1293)
+|+|||||||||+||+.+++.+.+.|....+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.|.+++
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHH
T ss_conf 99899983765447977999999999987538889999689999985999999989999998899999868-84999999
Q ss_pred HH
Q ss_conf 84
Q 000774 1143 QS 1144 (1293)
Q Consensus 1143 ~~ 1144 (1293)
..
T Consensus 251 ~~ 252 (255)
T d2hyda1 251 SI 252 (255)
T ss_dssp TT
T ss_pred HH
T ss_conf 97
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=443.42 Aligned_cols=239 Identities=36% Similarity=0.568 Sum_probs=226.2
Q ss_pred CCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH
Q ss_conf 97539999889993699998200013896499889999699998899999995277788636999996168989688855
Q 000774 905 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984 (1293)
Q Consensus 905 ~~~~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 984 (1293)
..|.|+++||+|+|+++..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+++++...+|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred HCEEECCCCCCCCCCHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 016872666545656766047799--999878999999930999998715995136312999999458999999998513
Q 000774 985 ILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 985 ~i~~v~Q~~~lf~~ti~~nl~~~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
+++|+||++.+|++|+++|+.+.. ..++++++++++.+++.++++.+|.|+++.+++.+.+|||||||||+|||||++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 99889983888899999899999999988289479997059310101488999959858664392466404998278999
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1142 (1293)
Q Consensus 1063 ~p~iliLDEpts~lD~~t~~~i~~~l~~~~~~~tvi~vsH~~~~~~~~d~v~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 1142 (1293)
+|+|||||||||+||+.+++.+++.|+++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.|.+++
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHH
T ss_conf 99889951644458988999999999875227889999887999985999999989999998899999868-93999999
Q ss_pred HH
Q ss_conf 84
Q 000774 1143 QS 1144 (1293)
Q Consensus 1143 ~~ 1144 (1293)
..
T Consensus 249 ~~ 250 (253)
T d3b60a1 249 KM 250 (253)
T ss_dssp HH
T ss_pred HH
T ss_conf 97
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=434.68 Aligned_cols=238 Identities=29% Similarity=0.476 Sum_probs=220.8
Q ss_pred CCCCEEEEEEEEEECCC-CCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 97539999889993699-99820001389649988999969999889999999527778863699999616898968885
Q 000774 905 SSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983 (1293)
Q Consensus 905 ~~~~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 983 (1293)
..|.|+++||+|+|++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|++.++...+|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred CCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHH
T ss_conf 53369999989988999999767443899849989999999998499999998614378768998899853110137888
Q ss_pred HHCEEECCCCCCCCCCHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 5016872666545656766047799--99987899999993099999871599513631299999945899999999851
Q 000774 984 KILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 1061 (1293)
Q Consensus 984 ~~i~~v~Q~~~lf~~ti~~nl~~~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 1061 (1293)
++++||||+|.+|++|+++|+.+.. ...+.++.++.+.+++.++++.+|.|+++.+++.+.+||||||||++|||||+
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCC
T ss_conf 77654045650027634655454210130278899999999899999856121113675167668954704899860445
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf 39988998388889999989999999998828--9479997059310101488999959858664392466404998278
Q 000774 1062 RRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1139 (1293)
Q Consensus 1062 ~~p~iliLDEpts~lD~~t~~~i~~~l~~~~~--~~tvi~vsH~~~~~~~~d~v~vl~~G~i~~~g~~~~l~~~~~~~~~ 1139 (1293)
++|+||||||||++||+.++..+++.|.+..+ ++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.|+
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y~ 246 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCYW 246 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHH
T ss_conf 68707871675765685368999999999765069899999597999985999999989999998899999859-75889
Q ss_pred HHHH
Q ss_conf 9998
Q 000774 1140 KMVQ 1143 (1293)
Q Consensus 1140 ~~~~ 1143 (1293)
++++
T Consensus 247 ~l~~ 250 (251)
T d1jj7a_ 247 AMVQ 250 (251)
T ss_dssp HHHC
T ss_pred HHHC
T ss_conf 9962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=437.85 Aligned_cols=234 Identities=33% Similarity=0.564 Sum_probs=219.9
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCEE
Q ss_conf 99998899936999982000138964998899996999988999999952777886369999961689896888550168
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++||+|+|++. +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.|+++++...+|++|+|
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 7999889987999-841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 7266654565676604779--99998789999999309999987159951363129999994589999999985139988
Q 000774 989 IPQSPVLFSGTVRFNLDPF--SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1066 (1293)
Q Consensus 989 v~Q~~~lf~~ti~~nl~~~--~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 1066 (1293)
|||++.+|++|++||+.+. ....+++++++++.+++.+++..+|.++++.+++.|.+||||||||++|||||+++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75665457853454301244555423567789999975554203742101523687898799999999999998529989
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
Q ss_conf 998388889999989999999998828947999705931010148899995985866439246640499827899984
Q 000774 1067 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1144 (1293)
Q Consensus 1067 liLDEpts~lD~~t~~~i~~~l~~~~~~~tvi~vsH~~~~~~~~d~v~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 1144 (1293)
||||||||+||+.+++.+++.|++..+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.|.+++..
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~ 237 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHH
T ss_conf 9965886556988999998878887179989999787999984999999989999999999999868-9699999999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=401.35 Aligned_cols=227 Identities=31% Similarity=0.472 Sum_probs=208.1
Q ss_pred CCCCEEEEEEEEECCCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE------------EC
Q ss_conf 999289984589718999999400002774399499999399984899999994598999987325------------40
Q 000774 281 GLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IR 348 (1293)
Q Consensus 281 ~~~~i~~~~~~~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~ 348 (1293)
....|+++||+|+|+. .++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|.+.. ++
T Consensus 13 ~~g~I~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 13 KQGRIDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CSCCEEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCEEEEEEEEEEECC-CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 7887999988999599-997606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 91899907765467248998725999-99889999999809714772099998630267998779279999999998603
Q 000774 349 GTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 427 (1293)
Q Consensus 349 ~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAral~~ 427 (1293)
..|+||+|++++|++||+|||.+|.+ .++++++++++.+++.+++..+|.|+++.++++|.+|||||||||+|||||++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHH
Q ss_conf 99889980766671999999999998711108968999805743042079699980975877139678831407899999
Q 000774 428 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 507 (1293)
Q Consensus 428 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~ 507 (1293)
+|+++|||||||+||+.++..+++.+ ....+++|+|+||||++.+..||+|++|++|++++.|+++++.++++.|+.++
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l-~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEAL-DVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHH-HHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH-HHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
T ss_conf 99899983765447977999999999-98753888999968999998599999998999999889999986884999999
Q ss_pred HH
Q ss_conf 98
Q 000774 508 EN 509 (1293)
Q Consensus 508 ~~ 509 (1293)
..
T Consensus 251 ~~ 252 (255)
T d2hyda1 251 SI 252 (255)
T ss_dssp TT
T ss_pred HH
T ss_conf 97
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=396.40 Aligned_cols=225 Identities=28% Similarity=0.458 Sum_probs=205.3
Q ss_pred CEEEEEEEEECCCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE------------ECCCE
Q ss_conf 289984589718999999400002774399499999399984899999994598999987325------------40918
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 351 (1293)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i 351 (1293)
.|+|+||+|+|++ ..+++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|.+.. ++..|
T Consensus 1 eI~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECC-CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 9299999999089-996037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99907765467248998725999-99889999999809714772099998630267998779279999999998603998
Q 000774 352 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 430 (1293)
Q Consensus 352 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAral~~~~~ 430 (1293)
+||+|+|++|++||+|||.++.+ .+.++++.+++.+.+.+++..+|.++++.+++.|.+|||||||||+|||||+++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHH
Q ss_conf 899807666719999999999987111089689998057430420796999809758771396788314-0789999998
Q 000774 431 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKLMEN 509 (1293)
Q Consensus 431 illlDEpts~LD~~~~~~i~~~l~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~-~~~~~~~~~~ 509 (1293)
++|||||||+||+.+++.+++.+ ....+++|+|+||||++.+..||+|++|++|++++.|+|++++++ .+.|..++..
T Consensus 160 ililDEpts~LD~~~~~~i~~~l-~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHH-HHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHH-HHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 35564776555989999999999-99858998999978899998499999998999999889999982998789999998
Q ss_pred H
Q ss_conf 2
Q 000774 510 A 510 (1293)
Q Consensus 510 ~ 510 (1293)
+
T Consensus 239 Q 239 (241)
T d2pmka1 239 Q 239 (241)
T ss_dssp H
T ss_pred H
T ss_conf 1
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=393.11 Aligned_cols=226 Identities=31% Similarity=0.490 Sum_probs=207.5
Q ss_pred CCEEEEEEEEECCCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE------------ECCC
Q ss_conf 9289984589718999999400002774399499999399984899999994598999987325------------4091
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 350 (1293)
Q Consensus 283 ~~i~~~~~~~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~ 350 (1293)
..|+|+||+|+|+. .+.++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|.+.. ++..
T Consensus 12 g~I~~~nvsf~Y~~-~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 90 (253)
T d3b60a1 12 GDLEFRNVTFTYPG-REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 90 (253)
T ss_dssp CCEEEEEEEECSSS-SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred EEEEEEEEEEEECC-CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHE
T ss_conf 07999988999299-99763533289985999999999999859999999862168884689878801211106654206
Q ss_pred EEEECCCCCCCCCCHHHHHCCCC--CCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 89990776546724899872599--9998899999998097147720999986302679987792799999999986039
Q 000774 351 VAYVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 428 (1293)
Q Consensus 351 i~~v~Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAral~~~ 428 (1293)
++|++|++++|++|+++|+.++. ..++++++++++.+.+.+++..+|.|+++.+++.+.+|||||||||+|||||+++
T Consensus 91 i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~ 170 (253)
T d3b60a1 91 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 170 (253)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 87995025447862024332057220899999999999817999973554410143488898499999999999999549
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHH
Q ss_conf 98899807666719999999999987111089689998057430420796999809758771396788314078999999
Q 000774 429 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 508 (1293)
Q Consensus 429 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~ 508 (1293)
|+|+|||||||+||+.+++.+++.+ +...+++|+|+||||++.+..||+|++|++|+|++.|++++++++++.|+.++.
T Consensus 171 p~ililDEpts~LD~~~~~~i~~~l-~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l~~ 249 (253)
T d3b60a1 171 SPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 249 (253)
T ss_dssp CSEEEEETTTSSCCHHHHHHHHHHH-HHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHH
T ss_conf 9889951644458988999999999-875227889999887999985999999989999998899999868939999999
Q ss_pred HH
Q ss_conf 82
Q 000774 509 NA 510 (1293)
Q Consensus 509 ~~ 510 (1293)
.+
T Consensus 250 ~Q 251 (253)
T d3b60a1 250 MQ 251 (253)
T ss_dssp HT
T ss_pred HC
T ss_conf 72
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=387.86 Aligned_cols=226 Identities=25% Similarity=0.403 Sum_probs=203.2
Q ss_pred CCEEEEEEEEECCCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE------------ECCC
Q ss_conf 9289984589718999999400002774399499999399984899999994598999987325------------4091
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 350 (1293)
Q Consensus 283 ~~i~~~~~~~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~ 350 (1293)
..|+|+||+|+|+...+.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 10 g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 89 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ 89 (251)
T ss_dssp CCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred CEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHHHH
T ss_conf 36999998998899999976744389984998999999999849999999861437876899889985311013788877
Q ss_pred EEEECCCCCCCCCCHHHHHCCCCC--CCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 899907765467248998725999--998899999998097147720999986302679987792799999999986039
Q 000774 351 VAYVPQVSWIFNATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 428 (1293)
Q Consensus 351 i~~v~Q~~~l~~~Tv~eni~~g~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAral~~~ 428 (1293)
++|++|+|++|++||+||+.+|.. ....+...+.+.+.+...+..+|.++++.+++.+.+|||||||||+|||||+++
T Consensus 90 i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~ 169 (251)
T d1jj7a_ 90 VAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRK 169 (251)
T ss_dssp EEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCCCC
T ss_conf 65404565002763465545421013027889999999989999985612111367516766895470489986044568
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHH
Q ss_conf 98899807666719999999999987111-08968999805743042079699980975877139678831407899999
Q 000774 429 SDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 507 (1293)
Q Consensus 429 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~ 507 (1293)
|+|+|||||||+||+.++..+++.+.... ..++|+|+||||++.+..||+|++|++|+++++|+|+++.++++.|+.++
T Consensus 170 p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~l~ 249 (251)
T d1jj7a_ 170 PCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMV 249 (251)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
T ss_conf 70787167576568536899999999976506989999959799998599999998999999889999985975889996
Q ss_pred H
Q ss_conf 9
Q 000774 508 E 508 (1293)
Q Consensus 508 ~ 508 (1293)
+
T Consensus 250 ~ 250 (251)
T d1jj7a_ 250 Q 250 (251)
T ss_dssp C
T ss_pred C
T ss_conf 2
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=389.93 Aligned_cols=224 Identities=25% Similarity=0.484 Sum_probs=204.6
Q ss_pred CEEEEEEEEECCCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE------------ECCCE
Q ss_conf 289984589718999999400002774399499999399984899999994598999987325------------40918
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 351 (1293)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~------------~~~~i 351 (1293)
.|+++||+|+|+. .+++|+|+||++++|+++||+|+||||||||+++|+|+++|++|.+.. ++..|
T Consensus 1 mle~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 78 (242)
T d1mv5a_ 1 MLSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI 78 (242)
T ss_dssp CEEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC
T ss_pred CEEEEEEEEECCC--CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHE
T ss_conf 9799988998799--98414225899859999999999999799999999996098987798899884424678887436
Q ss_pred EEECCCCCCCCCCHHHHHCCCC--CCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9990776546724899872599--99988999999980971477209999863026799877927999999999860399
Q 000774 352 AYVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 429 (1293)
Q Consensus 352 ~~v~Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAral~~~~ 429 (1293)
+||+|+|++|++||+||+.++. ..+++..+++.+.+.+..++..+|.++++.++++|.+|||||||||+|||||+++|
T Consensus 79 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p 158 (242)
T d1mv5a_ 79 GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP 158 (242)
T ss_dssp CEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 79756654578534543012445554235677899999755542037421015236878987999999999999985299
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHH
Q ss_conf 88998076667199999999999871110896899980574304207969998097587713967883140789999998
Q 000774 430 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 509 (1293)
Q Consensus 430 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~ 509 (1293)
+|+|||||||+||+.+++.+++.+ +...+++|+|+||||++.+..||+|++|++|+++++|+++++.++++.|++++..
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~l-~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~ 237 (242)
T d1mv5a_ 159 KILMLDEATASLDSESESMVQKAL-DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237 (242)
T ss_dssp SEEEEECCSCSSCSSSCCHHHHHH-HHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHC
T ss_pred CEEEECCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHH
T ss_conf 899965886556988999998878-8871799899997879999849999999899999999999998689699999999
Q ss_pred H
Q ss_conf 2
Q 000774 510 A 510 (1293)
Q Consensus 510 ~ 510 (1293)
+
T Consensus 238 Q 238 (242)
T d1mv5a_ 238 Q 238 (242)
T ss_dssp C
T ss_pred H
T ss_conf 8
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=372.29 Aligned_cols=210 Identities=24% Similarity=0.366 Sum_probs=166.5
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCE
Q ss_conf 39999889993699998200013896499889999699998899999995277788636999996168989688855016
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.|.|+|+++ .+ .|+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +++
T Consensus 38 ~i~~~~~~~--~g--~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~ 100 (281)
T d1r0wa_ 38 NVSFSHLCL--VG--NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVS 100 (281)
T ss_dssp --CHHHHHH--TT--CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEE
T ss_pred CEEEEECCC--CC--CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------EEE
T ss_conf 679997698--99--7677375999859999999989998299999999579747882899999-------------999
Q ss_pred EECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 87266654565676604779999987899999993099999871599513631299999945899999999851399889
Q 000774 988 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1067 (1293)
Q Consensus 988 ~v~Q~~~lf~~ti~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~il 1067 (1293)
|+||++.+|++|+++|+.+.....+.+.+++++.+.+.+.+..+|.++++.+++.+.+||||||||++|||||+++|+||
T Consensus 101 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~il 180 (281)
T d1r0wa_ 101 FCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY 180 (281)
T ss_dssp EECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred EEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCH
T ss_conf 98164302676032142033345605799999997769999846123323555542377999999999999998696351
Q ss_pred EEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCCCHHHCCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 98388889999989999999-99882894799970593101014889999598586643924664049
Q 000774 1068 VLDEATAAVDVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1134 (1293)
Q Consensus 1068 iLDEpts~lD~~t~~~i~~~-l~~~~~~~tvi~vsH~~~~~~~~d~v~vl~~G~i~~~g~~~~l~~~~ 1134 (1293)
||||||++||+.++..+++. +.....++|+|+|||+++.+..||||++|++|+|++.|+|+||++..
T Consensus 181 lLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~ 248 (281)
T d1r0wa_ 181 LLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLR 248 (281)
T ss_dssp EEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHC
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCC
T ss_conf 33385544898999999999998862899999992528999859999999899999987899996059
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=372.63 Aligned_cols=221 Identities=21% Similarity=0.348 Sum_probs=192.6
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCE
Q ss_conf 39999889993699998200013896499889999699998899999995277788636999996168989688855016
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.|+++|++++|++. .+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+...++. +++||
T Consensus 6 ~I~v~nlsk~yg~~--~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred EEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf 49998799999999--998130678879989999999998299999999758999878799916413547700--01589
Q ss_pred EECCCCCCCCC-CHHHHCCCCCC---CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 87266654565-67660477999---998789999999309999987159951363129999994589999999985139
Q 000774 988 IIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1063 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 1063 (1293)
||||++.+|.. |++||+.+... .+..++.+ .+.+.++. .+++...+.....||||||||++|||||+.+
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~ 154 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK-----RVRWAAEL--LQIEELLNRYPAQLSGGQRQRVAVARAIVVE 154 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHH-----HHHHHHHH--TTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHH--CCCHHHHCCCHHHCCHHHHHHHHHHHHHCCC
T ss_conf 9800335342220999999999873999999999-----99999987--5985566099546999998899997664049
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHC-CCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf 988998388889999989999999998828--9479997059310101-488999959858664392466404998278
Q 000774 1064 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1139 (1293)
Q Consensus 1064 p~iliLDEpts~lD~~t~~~i~~~l~~~~~--~~tvi~vsH~~~~~~~-~d~v~vl~~G~i~~~g~~~~l~~~~~~~~~ 1139 (1293)
|++|||||||++||+.+...+++.|+++.+ ++|+|++|||++++.. ||||++|++|+|++.|+++++.++....|.
T Consensus 155 P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~ 233 (239)
T d1v43a3 155 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 233 (239)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHH
T ss_conf 9824306886668989998999999999873198079994899999986999999989999998599999868999899
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=369.89 Aligned_cols=215 Identities=22% Similarity=0.337 Sum_probs=185.6
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCEE
Q ss_conf 99998899936999982000138964998899996999988999999952777886369999961689896888550168
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++||+++|++. ++|+|+||++++||++||+||||||||||+++|.|+++|++|+|.++|.++.+.++ .|++|||
T Consensus 1 Iev~nv~k~yg~~--~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECCE--EEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEEE
T ss_conf 9999999998999--99811177886998999998999829999999965878888889999997788864--4432223
Q ss_pred ECCCCCCCCC-CHHHHCCCCCCC---C----HHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 7266654565-676604779999---9----8789999999309999987159951363129999994589999999985
Q 000774 989 IPQSPVLFSG-TVRFNLDPFSEH---S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~~~---~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
|||++.+|.. |++||+.+.... + ++++.++++.+++.++ .......||||||||++|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~-----------~~~~~~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL-----------LDRKPKALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HHCCHHHCCHHHHHHHHHHHHH
T ss_conf 43342026433378897899987599889999999999975788656-----------6489656999999999999997
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCHHHC-CCEEEEEECCEEEEECCHHHHHHCCCCH
Q ss_conf 13998899838888999998999999999882--89479997059310101-4889999598586643924664049982
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 1137 (1293)
Q Consensus 1061 l~~p~iliLDEpts~lD~~t~~~i~~~l~~~~--~~~tvi~vsH~~~~~~~-~d~v~vl~~G~i~~~g~~~~l~~~~~~~ 1137 (1293)
+.+|++|+|||||++||+.+...+++.|+++. .+.|+|++|||++++.. |||+++|++|+|++.|+++|++++....
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~ 225 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCH
T ss_conf 03998899758887889889989999999998742987999948999999969999999799999980899997389997
Q ss_pred H
Q ss_conf 7
Q 000774 1138 F 1138 (1293)
Q Consensus 1138 ~ 1138 (1293)
|
T Consensus 226 ~ 226 (232)
T d2awna2 226 F 226 (232)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=370.24 Aligned_cols=220 Identities=37% Similarity=0.667 Sum_probs=201.6
Q ss_pred CCEEEEEEEEECCCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCCEEEECCCCCCCC
Q ss_conf 92899845897189999994000027743994999993999848999999945989999873254091899907765467
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 362 (1293)
Q Consensus 283 ~~i~~~~~~~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~~~~~i~~v~Q~~~l~~ 362 (1293)
..|.|++++| .++|+|+|+||+|++|+++||+|+||||||||+++|+|+++|++| .+.+.++++|++|++++|+
T Consensus 37 ~~i~~~~~~~-----~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G-~I~~~g~i~~v~Q~~~l~~ 110 (281)
T d1r0wa_ 37 NNVSFSHLCL-----VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG-IIKHSGRVSFCSQFSWIMP 110 (281)
T ss_dssp ---CHHHHHH-----TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEE-EEECCSCEEEECSSCCCCS
T ss_pred CCEEEEECCC-----CCCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEEEEEECCCCCCC
T ss_conf 9679997698-----997677375999859999999989998299999999579747882-8999999999816430267
Q ss_pred CCHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 24899872599999889999999809714772099998630267998779279999999998603998899807666719
Q 000774 363 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442 (1293)
Q Consensus 363 ~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAral~~~~~illlDEpts~LD 442 (1293)
+||+||+.++...++.+++.+++.+.+..++..++.++++.+++++.+|||||||||+|||||+++|+|+||||||++||
T Consensus 111 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD 190 (281)
T d1r0wa_ 111 GTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 190 (281)
T ss_dssp EEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSC
T ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCC
T ss_conf 60321420333456057999999977699998461233235555423779999999999999986963513338554489
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHH
Q ss_conf 999999999987111089689998057430420796999809758771396788314078999999
Q 000774 443 AHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 508 (1293)
Q Consensus 443 ~~~~~~i~~~l~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~ 508 (1293)
+.+.+.+++.++.....++|+|+|||+++.+..||+|++|++|++++.|+++++.+..+.|...+.
T Consensus 191 ~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~~ 256 (281)
T d1r0wa_ 191 VFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 256 (281)
T ss_dssp HHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHHC
T ss_conf 899999999999886289999999252899985999999989999998789999605948999872
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.4e-45 Score=365.31 Aligned_cols=212 Identities=25% Similarity=0.375 Sum_probs=186.0
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCEE
Q ss_conf 99998899936999982000138964998899996999988999999952777886369999961689896888550168
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
|+++|++++|++ .+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+.+.++. |++|||
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred ECCCCCCCCC-CHHHHCCCC----CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 7266654565-676604779----99998789999999309999987159951363129999994589999999985139
Q 000774 989 IPQSPVLFSG-TVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1063 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~----~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 1063 (1293)
+||++.+|.. |++||+.+. ....++++.++++.. ++..........||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL-----------KIEHLLDRNPLTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT-----------TCTTTTTSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH-----------CCHHHHHCCHHHCCHHHHCCHHHHHHHHCC
T ss_conf 512111174665778888877640553899999999982-----------565557589554799984014030434436
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCHHHC-CCEEEEEECCEEEEECCHHHHHHCCCC
Q ss_conf 98899838888999998999999999882--89479997059310101-488999959858664392466404998
Q 000774 1064 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1136 (1293)
Q Consensus 1064 p~iliLDEpts~lD~~t~~~i~~~l~~~~--~~~tvi~vsH~~~~~~~-~d~v~vl~~G~i~~~g~~~~l~~~~~~ 1136 (1293)
|++|||||||++||+.+...+++.|+++. .+.|+|++||+++++.. ||||++|.+|++++.|+++|++++...
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~ 221 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVE 221 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCT
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
T ss_conf 7714434787679989999999999999864796899974999999996999999979999998699999868998
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=367.66 Aligned_cols=224 Identities=22% Similarity=0.350 Sum_probs=189.5
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHH
Q ss_conf 39999889993699998200013896499889999699998899999995277788636999996168989---688855
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRK 984 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~---~~~~r~ 984 (1293)
.|+++||+++|++....+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+ ....|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred HCEEECCCCCCCCC-CHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 01687266654565-6766047799---9998789999999309999987159951363129999994589999999985
Q 000774 985 ILGIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1060 (1293)
Q Consensus 985 ~i~~v~Q~~~lf~~-ti~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 1060 (1293)
+||||||++.+|.. |++||+.+.. ..+..++.+. +.+.++. .|++.........||||||||++|||||
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~-----v~~~l~~--~gL~~~~~~~p~~LSGGqkQRvaiARaL 155 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEEVAKI--LDIHHVLNHFPRELSGAQQQRVALARAL 155 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHH-----HHHHHHH--TTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH-----HHHHHHH--CCHHHHHHCCHHHCCHHHHHHHHHHHHH
T ss_conf 51477304334666657777665567613799999999-----9999866--5917666489545999998589987577
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHC-CCEEEEEECCEEEEECCHHHHHHCCCCH
Q ss_conf 139988998388889999989999999998828--9479997059310101-4889999598586643924664049982
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 1137 (1293)
Q Consensus 1061 l~~p~iliLDEpts~lD~~t~~~i~~~l~~~~~--~~tvi~vsH~~~~~~~-~d~v~vl~~G~i~~~g~~~~l~~~~~~~ 1137 (1293)
+.+|++||+||||++||+.+...+++.|+++.+ +.|+|++|||++++.. ||||++|++|+|++.|+|+++..+....
T Consensus 156 ~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~~ 235 (242)
T d1oxxk2 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSI 235 (242)
T ss_dssp TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSH
T ss_pred HHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCH
T ss_conf 60466145447866799899889989999998635987999979999999969999999899999986999998689997
Q ss_pred H
Q ss_conf 7
Q 000774 1138 F 1138 (1293)
Q Consensus 1138 ~ 1138 (1293)
|
T Consensus 236 ~ 236 (242)
T d1oxxk2 236 Q 236 (242)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=368.32 Aligned_cols=223 Identities=20% Similarity=0.338 Sum_probs=186.9
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 39999889993699998200013896499889999699998899999995277788636999996168989688----85
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD----LR 983 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~----~r 983 (1293)
.|+++||+++|++. ++|+|+||++++||++||+||||||||||+++|.|+++|++|+|.++|.++...+... .|
T Consensus 3 ~i~v~nl~k~yg~~--~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 18998699998999--9985606688699899999999980999999996487889898999999803566444245322
Q ss_pred HHCEEECCCCCCCCC-CHHHHCCCC---CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 501687266654565-676604779---9999878999999930999998715995136312999999458999999998
Q 000774 984 KILGIIPQSPVLFSG-TVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1059 (1293)
Q Consensus 984 ~~i~~v~Q~~~lf~~-ti~~nl~~~---~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 1059 (1293)
+.||||||++.+|.. |+.||+.+. ...+..++.+. +.+.++. .++..........||||||||++||||
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~-----v~~~l~~--~~l~~~~~~~p~~LSGGqkQRv~IAra 153 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR-----VREVAEL--LGLTELLNRKPRELSGGQRQRVALGRA 153 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHH-----HHHHHHH--HTCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHH--CCCHHHHCCCHHHCCHHHHHHHHHHHH
T ss_conf 551200221222310116676330687729998999999-----9999987--599667629933499999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHC-CCEEEEEECCEEEEECCHHHHHHCCCC
Q ss_conf 5139988998388889999989999999998828--9479997059310101-488999959858664392466404998
Q 000774 1060 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1136 (1293)
Q Consensus 1060 ll~~p~iliLDEpts~lD~~t~~~i~~~l~~~~~--~~tvi~vsH~~~~~~~-~d~v~vl~~G~i~~~g~~~~l~~~~~~ 1136 (1293)
|+.+|++|||||||++||+.+...+++.|+++.+ +.|+|++|||++++.. ||||++|++|+|++.|+++|++.+...
T Consensus 154 L~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~~ 233 (240)
T d1g2912 154 IVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPAN 233 (240)
T ss_dssp HHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
T ss_conf 82699889825887656989998999999999863698899995999999996999999989999998599999828999
Q ss_pred HHH
Q ss_conf 278
Q 000774 1137 SFS 1139 (1293)
Q Consensus 1137 ~~~ 1139 (1293)
.|.
T Consensus 234 ~~~ 236 (240)
T d1g2912 234 TFV 236 (240)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 898
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=366.00 Aligned_cols=219 Identities=27% Similarity=0.448 Sum_probs=187.4
Q ss_pred EEEEEEEEEECCCCC--CCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 999988999369999--8200013896499889999699998899999995277788636999996168989688---85
Q 000774 909 IKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 983 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~--~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 983 (1293)
|+++|++++|+.+.. .+|+|+||+|++||++||+||||||||||+++|.|+.+|++|+|.++|.++...+..+ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred HHCEEECCCCCCCCC-CHHHHCCCC---CCCCH----HHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHH
Q ss_conf 501687266654565-676604779---99998----7899999993099999871599513631299999945899999
Q 000774 984 KILGIIPQSPVLFSG-TVRFNLDPF---SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1055 (1293)
Q Consensus 984 ~~i~~v~Q~~~lf~~-ti~~nl~~~---~~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 1055 (1293)
++||||||++.+|.. |++||+.+. ...+. +.+.++++.+ |+..........||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~v-----------gL~~~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-----------GLGDKHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHH-----------STTTTTSSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-----------CCCHHHHCCHHHCCHHHHHHHH
T ss_conf 16643022522279964999999999984999899999999999976-----------9903554894349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99985139988998388889999989999999998828--9479997059310101-48899995985866439246640
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1132 (1293)
Q Consensus 1056 lArall~~p~iliLDEpts~lD~~t~~~i~~~l~~~~~--~~tvi~vsH~~~~~~~-~d~v~vl~~G~i~~~g~~~~l~~ 1132 (1293)
|||||+.+|++|||||||++||+.+...+++.|+++.+ +.|+|++|||+.++.. ||||++|++|+|++.|+++|+.+
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred CCCCHH
Q ss_conf 499827
Q 000774 1133 NEGSSF 1138 (1293)
Q Consensus 1133 ~~~~~~ 1138 (1293)
+....|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCCHH
T ss_conf 899857
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.7e-44 Score=355.16 Aligned_cols=219 Identities=25% Similarity=0.441 Sum_probs=190.9
Q ss_pred CCEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHC
Q ss_conf 53999988999369999820001389649988999969999889999999527778863699999616898968885501
Q 000774 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 986 (1293)
Q Consensus 907 ~~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 986 (1293)
|.|+++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.|+.+ .+...|+.+
T Consensus 1 gaI~v~nl~k~yg~~--~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CCEEEEEEEEEECCE--EEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHHE
T ss_conf 978999589999999--99806256884897999999999999999999966988788879998672446-839887218
Q ss_pred EEECCCCCCCCC-CHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 687266654565-6766047799---999878999999930999998715995136312999999458999999998513
Q 000774 987 GIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 987 ~~v~Q~~~lf~~-ti~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
+|+||++.+|.. |++||+.++. .....++.+.++. .++. .+++....+...+||||||||++|||||+.
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-----~l~~--~~l~~~~~~~~~~lSgG~~qrv~iA~al~~ 150 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER-----ATEI--AGLGEKIKDRVSTYSKGMVRKLLIARALMV 150 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHH-----HHHH--HCCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH-----HHHH--CCCHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 675001546878667788898998617998999999999-----9986--797888850453379989899999999865
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCHHHC-CCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 998899838888999998999999999882-89479997059310101-48899995985866439246640499
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1135 (1293)
Q Consensus 1063 ~p~iliLDEpts~lD~~t~~~i~~~l~~~~-~~~tvi~vsH~~~~~~~-~d~v~vl~~G~i~~~g~~~~l~~~~~ 1135 (1293)
+|++|+|||||+|||+.+.+.+++.|++.. .++|+|++||+++++.. ||||++|++|+|++.|+++++..+..
T Consensus 151 ~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 151 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 999887337988979899999999999999659989999598999999699999998999999928999986528
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.7e-44 Score=355.16 Aligned_cols=223 Identities=26% Similarity=0.364 Sum_probs=185.2
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--------
Q ss_conf 399998899936999982000138964998899996999988999999952777886369999961689896--------
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-------- 979 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~-------- 979 (1293)
.|+++|++++|++. ++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+.
T Consensus 2 ~Lev~nl~k~yg~~--~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 69999789998999--9881506688699799999899982999999997476678997799999933677520000235
Q ss_pred -----HHHHHHCEEECCCCCCCCC-CHHHHCCCC----CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH-HCCCCCCCH
Q ss_conf -----8885501687266654565-676604779----99998789999999309999987159951363-129999994
Q 000774 980 -----MDLRKILGIIPQSPVLFSG-TVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQV-SEAGENFSV 1048 (1293)
Q Consensus 980 -----~~~r~~i~~v~Q~~~lf~~-ti~~nl~~~----~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~-~~~~~~LSg 1048 (1293)
...|++||||||++.+|.. |+.+|+... ......+..+. +.+.++. .++.... .....+|||
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~-----~~~~l~~--~~l~~~~~~~~p~~LSG 152 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARER-----ALKYLAK--VGIDERAQGKYPVHLSG 152 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHH-----HHHHHHH--TTCCHHHHTSCGGGSCH
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHH--CCCCHHHHCCCCCCCCH
T ss_conf 1767999745448998332314110102136565787629998999999-----9999998--29952443068220567
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHC-CCEEEEEECCEEEEECC
Q ss_conf 589999999985139988998388889999989999999998828-9479997059310101-48899995985866439
Q 000774 1049 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1126 (1293)
Q Consensus 1049 Gqkqrl~lArall~~p~iliLDEpts~lD~~t~~~i~~~l~~~~~-~~tvi~vsH~~~~~~~-~d~v~vl~~G~i~~~g~ 1126 (1293)
||+||++|||||+.+|++|||||||++||+.+...+++.|+++.+ +.|+|+||||++++.. ||||++|.+|+|++.|+
T Consensus 153 G~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~ 232 (258)
T d1b0ua_ 153 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 232 (258)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEEECC
T ss_conf 78889899999843998788524555688788889987655410368833899489999998699999997999999849
Q ss_pred HHHHHHCCCCHHH
Q ss_conf 2466404998278
Q 000774 1127 PEELLSNEGSSFS 1139 (1293)
Q Consensus 1127 ~~~l~~~~~~~~~ 1139 (1293)
++|++.+....|.
T Consensus 233 ~~ev~~~P~~~~~ 245 (258)
T d1b0ua_ 233 PEQVFGNPQSPRL 245 (258)
T ss_dssp HHHHHHSCCSHHH
T ss_pred HHHHHHCCCCHHH
T ss_conf 9999838999999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.5e-44 Score=353.66 Aligned_cols=216 Identities=25% Similarity=0.343 Sum_probs=185.6
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHH-C
Q ss_conf 399998899936999982000138964998899996999988999999952777886369999961689896888550-1
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI-L 986 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~-i 986 (1293)
.|+++|++++|++. ++|+||||++++||++||+||||||||||+++|+|+++|++|+|.++|.|+...++.+.++. |
T Consensus 4 iL~v~nlsk~yg~~--~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETTE--EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 69997789997996--8871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEECCCCCCCCC-CHHHHCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHH
Q ss_conf 687266654565-67660477999----------------9987899999993099999871599513631299999945
Q 000774 987 GIIPQSPVLFSG-TVRFNLDPFSE----------------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 1049 (1293)
Q Consensus 987 ~~v~Q~~~lf~~-ti~~nl~~~~~----------------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgG 1049 (1293)
+|+||++.+|.. |+.||+..... ..+.+.. ..+.+.++. .++..........||||
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~--~~l~~~~~~~~~~LSgG 154 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEF--LKLSHLYDRKAGELSGG 154 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHH--TTCGGGTTSBGGGSCHH
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHH-----HHHHHHHHH--CCCCHHCCCCHHHCCCH
T ss_conf 72577642478874232143013330345045665421353289999-----999999876--19630205953569918
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCHHHC-CCEEEEEECCEEEEECCH
Q ss_conf 8999999998513998899838888999998999999999882-89479997059310101-488999959858664392
Q 000774 1050 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1127 (1293)
Q Consensus 1050 qkqrl~lArall~~p~iliLDEpts~lD~~t~~~i~~~l~~~~-~~~tvi~vsH~~~~~~~-~d~v~vl~~G~i~~~g~~ 1127 (1293)
||||++|||||+.+|++|||||||++||+.+.+.+++.|++.. .++|+|++||+++++.. ||||++|++|+|++.|++
T Consensus 155 ~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~ 234 (254)
T d1g6ha_ 155 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234 (254)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECH
T ss_conf 88899999999759272324397656999999999999999997899899994769999986999999969989999668
Q ss_pred HHHHH
Q ss_conf 46640
Q 000774 1128 EELLS 1132 (1293)
Q Consensus 1128 ~~l~~ 1132 (1293)
+|+.+
T Consensus 235 ~e~~~ 239 (254)
T d1g6ha_ 235 EEEIK 239 (254)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99865
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.1e-44 Score=354.28 Aligned_cols=212 Identities=24% Similarity=0.352 Sum_probs=177.1
Q ss_pred EEEEEEEEEECCCCC--CCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 999988999369999--82000138964998899996999988999999952777886369999961689896888----
Q 000774 909 IKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL---- 982 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~--~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~---- 982 (1293)
|+++||+++|+.... .+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+..++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HHHCEEECCCCCCCCC-CHHHHCCC---C---CCCCHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHCCCCCCCHHHHHHH
Q ss_conf 5501687266654565-67660477---9---999987899999993099999871599513-63129999994589999
Q 000774 983 RKILGIIPQSPVLFSG-TVRFNLDP---F---SEHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQRQLL 1054 (1293)
Q Consensus 983 r~~i~~v~Q~~~lf~~-ti~~nl~~---~---~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~~LSgGqkqrl 1054 (1293)
|++||||||++.+|.. |++||+.+ + ...+..+..+ .+.+.++. .++.. .......+||||||||+
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~~~l~~--~~L~~~~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRK-----RALECLKM--AELEERFANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHH-----HHHHHHHH--TTCCGGGTTCCGGGSCHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHHHH--HCHHHHHHCCCHHHCCHHHHHHH
T ss_conf 555778804124176866888775788872247899999999-----99998876--24234553488023899999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHCCCEEEEEECCEEEEECCH
Q ss_conf 999985139988998388889999989999999998828--9479997059310101488999959858664392
Q 000774 1055 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1127 (1293)
Q Consensus 1055 ~lArall~~p~iliLDEpts~lD~~t~~~i~~~l~~~~~--~~tvi~vsH~~~~~~~~d~v~vl~~G~i~~~g~~ 1127 (1293)
+|||||+.+|++|||||||++||+.+...+++.|.++.+ ++|+|+||||++.+..||||++|++|+|++.|++
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.8e-44 Score=354.83 Aligned_cols=219 Identities=21% Similarity=0.386 Sum_probs=184.5
Q ss_pred CCEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHH-
Q ss_conf 5399998899936999982000138964998899996999988999999952777886369999961689896888550-
Q 000774 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI- 985 (1293)
Q Consensus 907 ~~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~- 985 (1293)
-.|+++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+....++.
T Consensus 5 ~~Lev~~l~k~yg~~--~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECCE--EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 079996189998998--888302578889979999999998599999999678888803898424434466088888742
Q ss_pred CEEECCCCCCCCC-CHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 1687266654565-6766047799--999878999999930999998715995136312999999458999999998513
Q 000774 986 LGIIPQSPVLFSG-TVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1062 (1293)
Q Consensus 986 i~~v~Q~~~lf~~-ti~~nl~~~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 1062 (1293)
++|+||++.+|.. |++||+.... ....+...+.++.+ ...+ .++.........+||||||||++|||||+.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLF-PRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHC-HHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH-HCHHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 3556765545776369999998887327888999999999-----9874-176888758543389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 9988998388889999989999999998828-9479997059310101-488999959858664392466404
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1063 ~p~iliLDEpts~lD~~t~~~i~~~l~~~~~-~~tvi~vsH~~~~~~~-~d~v~vl~~G~i~~~g~~~~l~~~ 1133 (1293)
+|++|+|||||++||+.+...+++.|+++.+ ++|+|++||+++++.. ||||++|++|++++.|+++|+.++
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 9987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=7e-42 Score=334.88 Aligned_cols=213 Identities=27% Similarity=0.416 Sum_probs=181.2
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCEE
Q ss_conf 99998899936999982000138964998899996999988999999952777886369999961689896888550168
Q 000774 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 909 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
+++ ++.++|++. .+ |+||++. +|+++|+||||||||||+++|.|+++|++|+|.++|.|+.+.++. |++|||
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-999998999---99-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred ECCCCCCCCC-CHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 7266654565-6766047799-9998789999999309999987159951363129999994589999999985139988
Q 000774 989 IPQSPVLFSG-TVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1066 (1293)
Q Consensus 989 v~Q~~~lf~~-ti~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 1066 (1293)
|||++.+|.. ||+||+.+.. .....+..+ .+.+.++. .|+....+.....||||||||++|||||+.+|++
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~-----~v~~~l~~--~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~i 147 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDR-----RVREMAEK--LGIAHLLDRKPARLSGGERQRVALARALVIQPRL 147 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH-----HHHHHHHT--TTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHH-----HHHHHHHH--CCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf 5231443522015576665323367788999-----99999986--3837566579444899998999998777516770
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHC-CCEEEEEECCEEEEECCHHHHHHCCCC
Q ss_conf 998388889999989999999998828--9479997059310101-488999959858664392466404998
Q 000774 1067 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1136 (1293)
Q Consensus 1067 liLDEpts~lD~~t~~~i~~~l~~~~~--~~tvi~vsH~~~~~~~-~d~v~vl~~G~i~~~g~~~~l~~~~~~ 1136 (1293)
|+|||||++||+.+...+++.|+++.+ +.|+|++||+++++.. ||||++|++|++++.|+++|+++....
T Consensus 148 lllDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~ 220 (240)
T d2onka1 148 LLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNG 220 (240)
T ss_dssp BEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCS
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCH
T ss_conf 6752865558879999999999999874397699981899999996999999989999999069998329988
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.5e-39 Score=316.85 Aligned_cols=204 Identities=24% Similarity=0.317 Sum_probs=170.0
Q ss_pred CCEEEEEEEEECCCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE----------ECCCEE
Q ss_conf 9289984589718999999400002774399499999399984899999994598999987325----------409189
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 352 (1293)
Q Consensus 283 ~~i~~~~~~~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~----------~~~~i~ 352 (1293)
..|+++|++++|+ +..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..||
T Consensus 5 ~~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig 81 (239)
T d1v43a3 5 VEVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 81 (239)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEE
T ss_pred CEEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEE
T ss_conf 7499987999999---9999813067887998999999999829999999975899987879991641354770001589
Q ss_pred EECCCCCCC-CCCHHHHHCCCCC---CCHHH----HHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 990776546-7248998725999---99889----999999809714772099998630267998779279999999998
Q 000774 353 YVPQVSWIF-NATVRDNILFGSA---FEPAR----YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 424 (1293)
Q Consensus 353 ~v~Q~~~l~-~~Tv~eni~~g~~---~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAra 424 (1293)
|++|++-+| +.||.||+.++.. .+.++ ..+.++..++.+. .+.....||||||||++||||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL-----------LNRYPAQLSGGQRQRVAVARA 150 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGG-----------TTSCTTTCCSSCHHHHHHHHH
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHHHHHH
T ss_conf 980033534222099999999987399999999999999987598556-----------609954699999889999766
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCCCHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 6039988998076667199999999999871110-89689998057430420-7969998097587713967883140
Q 000774 425 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 500 (1293)
Q Consensus 425 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 500 (1293)
|..+|++++|||||++|||.+.+.+++.+.+... .+.|+|+||||+.+... ||+|++|++|+++++|+++++.++.
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 404998243068866689899989999999998731980799948999999869999999899999985999998689
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.9e-40 Score=320.00 Aligned_cols=201 Identities=29% Similarity=0.425 Sum_probs=168.6
Q ss_pred EEEEEEEEECCCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE----------ECCCEEEE
Q ss_conf 89984589718999999400002774399499999399984899999994598999987325----------40918999
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 354 (1293)
Q Consensus 285 i~~~~~~~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~----------~~~~i~~v 354 (1293)
|+++|++++|+ +..+|+|+||++++||+++|+||||||||||+++++|+++|++|.+.. .+..||||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 77 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 77 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEE
T ss_pred CEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEE
T ss_conf 99999999989---999981117788699899999899982999999996587888888999999778886444322234
Q ss_pred CCCCCCC-CCCHHHHHCCCCCC---CH----HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 0776546-72489987259999---98----8999999980971477209999863026799877927999999999860
Q 000774 355 PQVSWIF-NATVRDNILFGSAF---EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 426 (1293)
Q Consensus 355 ~Q~~~l~-~~Tv~eni~~g~~~---~~----~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAral~ 426 (1293)
+|++.+| ..||.||+.++... +. ++..+.++..++.+.. +....+||||||||++|||||+
T Consensus 78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-----------~~~~~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp CSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------HCCHHHCCHHHHHHHHHHHHHH
T ss_conf 33420264333788978999875998899999999999757886566-----------4896569999999999999970
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEEECCCCHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 399889980766671999999999998711-1089689998057430420-796999809758771396788314
Q 000774 427 SNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 427 ~~~~illlDEpts~LD~~~~~~i~~~l~~~-~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 499 (1293)
.+|++++|||||++||+.+.+.+++.+.+. ...+.|+|+||||+.++.. ||||++|++|++++.|+++++.++
T Consensus 147 ~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 147 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 399889975888788988998999999999874298799994899999996999999979999998089999738
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.2e-39 Score=317.63 Aligned_cols=203 Identities=24% Similarity=0.392 Sum_probs=169.9
Q ss_pred CEEEEEEEEECCCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE----------------E
Q ss_conf 289984589718999999400002774399499999399984899999994598999987325----------------4
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 347 (1293)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~----------------~ 347 (1293)
.|+++|++++|+ +.++++|+||++++||+++|+|+||||||||+++|+|.++|++|.+.. .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 189986999989---99998560668869989999999998099999999648788989899999980356644424532
Q ss_pred CCCEEEECCCCCCC-CCCHHHHHCCCC---CCCH----HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 09189990776546-724899872599---9998----899999998097147720999986302679987792799999
Q 000774 348 RGTVAYVPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 419 (1293)
Q Consensus 348 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi 419 (1293)
+..||||+|++.+| ..||.||+.++. ..+. ++..+.++..++.+..+ ....+||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~-----------~~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHC-----------CCHHHCCHHHHHHH
T ss_conf 2551200221222310116676330687729998999999999998759966762-----------99334999999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHH-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 9999860399889980766671999999999998711108-9689998057430420-7969998097587713967883
Q 000774 420 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 497 (1293)
Q Consensus 420 ~lAral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~-~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~ 497 (1293)
+|||||..+|++++|||||++||+.+...+++.+.+...+ +.|+|+||||+..+.. ||+|++|++|++++.|+++++.
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999826998898258876569899989999999998636988999959999999969999999899999985999998
Q ss_pred HCC
Q ss_conf 140
Q 000774 498 NNG 500 (1293)
Q Consensus 498 ~~~ 500 (1293)
.+.
T Consensus 229 ~~P 231 (240)
T d1g2912 229 DKP 231 (240)
T ss_dssp HSC
T ss_pred HCC
T ss_conf 289
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.4e-39 Score=317.20 Aligned_cols=205 Identities=25% Similarity=0.346 Sum_probs=170.8
Q ss_pred CEEEEEEEEECCCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE---------------EC
Q ss_conf 289984589718999999400002774399499999399984899999994598999987325---------------40
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 348 (1293)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------~~ 348 (1293)
.|+++|++++|+. .+..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+
T Consensus 3 ~i~v~nlsk~y~~-g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECC-CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 8999757999889-998998040789879989999989998099999999758688874599999995137311153120
Q ss_pred CCEEEECCCCCCC-CCCHHHHHCCCCC---CCH----HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 9189990776546-7248998725999---998----8999999980971477209999863026799877927999999
Q 000774 349 GTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420 (1293)
Q Consensus 349 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~ 420 (1293)
..|||++|++.+| ..||.|||.++.. .+. ++..+.++.+++.+..+. ....||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH-----------FPRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHC-----------CHHHCCHHHHHHHH
T ss_conf 4514773043346666577776655676137999999999999866591766648-----------95459999985899
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCCCHHH-HCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99986039988998076667199999999999871110-8968999805743042-079699980975877139678831
Q 000774 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 498 (1293)
Q Consensus 421 lAral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~ 498 (1293)
|||||..+|+++|+||||++||+.+...+++.+..... .+.|+|+||||+..+. .||+|++|++|++++.|+++++.+
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 87577604661454478667998998899899999986359879999799999999699999998999999869999986
Q ss_pred CC
Q ss_conf 40
Q 000774 499 NG 500 (1293)
Q Consensus 499 ~~ 500 (1293)
+.
T Consensus 231 ~P 232 (242)
T d1oxxk2 231 NP 232 (242)
T ss_dssp SC
T ss_pred CC
T ss_conf 89
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.3e-39 Score=313.36 Aligned_cols=202 Identities=27% Similarity=0.393 Sum_probs=169.5
Q ss_pred CEEEEEEEEECCCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE----------ECCCEEE
Q ss_conf 289984589718999999400002774399499999399984899999994598999987325----------4091899
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 353 (1293)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~----------~~~~i~~ 353 (1293)
.|+++|++++|+. .+|+|+||++++||+++|+|+||||||||+++|+|.++|++|.+.. .+..|||
T Consensus 1 mi~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~ 76 (229)
T d3d31a2 1 MIEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAF 76 (229)
T ss_dssp CEEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEE
T ss_pred CEEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEE
T ss_conf 9899989999499----788433789879989999989998299999999647688878899956734652165740561
Q ss_pred ECCCCCCC-CCCHHHHHCCCC----CCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 90776546-724899872599----9998899999998097147720999986302679987792799999999986039
Q 000774 354 VPQVSWIF-NATVRDNILFGS----AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 428 (1293)
Q Consensus 354 v~Q~~~l~-~~Tv~eni~~g~----~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAral~~~ 428 (1293)
++|++.+| ..||.||+.++. ..+.++..++++..++.+.. +....+||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL-----------DRNPLTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTT-----------TSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH-----------HCCHHHCCHHHHCCHHHHHHHHCC
T ss_conf 512111174665778888877640553899999999982565557-----------589554799984014030434436
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCCCHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 988998076667199999999999871110-89689998057430420-7969998097587713967883140
Q 000774 429 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 500 (1293)
Q Consensus 429 ~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 500 (1293)
|+++||||||++||+.+...+++.+.+... .+.|+|+|||++..+.. ||+|++|++|++++.|+++++.++.
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P 219 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 77144347876799899999999999998647968999749999999969999999799999986999998689
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-39 Score=315.38 Aligned_cols=205 Identities=25% Similarity=0.377 Sum_probs=168.1
Q ss_pred CEEEEEEEEECCCCCCC-CCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE---------------E
Q ss_conf 28998458971899999-9400002774399499999399984899999994598999987325---------------4
Q 000774 284 AISIRNGYFSWDSKAER-PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 347 (1293)
Q Consensus 284 ~i~~~~~~~~~~~~~~~-~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------~ 347 (1293)
.|+++|++++|+.+... .+|+|+||++++||+++|+|+||||||||+++|+|+.+|++|.+.. .
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHH
T ss_conf 97998279996999814898615057886997999989998988899998758863667732886768520875551155
Q ss_pred CCCEEEECCCCCCC-CCCHHHHHCCCC-----CCCH--HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 09189990776546-724899872599-----9998--899999998097147720999986302679987792799999
Q 000774 348 RGTVAYVPQVSWIF-NATVRDNILFGS-----AFEP--ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 419 (1293)
Q Consensus 348 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~-----~~~~--~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi 419 (1293)
|..||||+|++-++ ..||.||+.++. +..+ ++..+.++.+++.+.. +.....||||||||+
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~-----------~~~~~~LSGG~~QRv 149 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-----------DSYPSNLSGGQKQRV 149 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTT-----------SSCBSCCCHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH-----------HCCHHHCCHHHHHHH
T ss_conf 416643022522279964999999999984999899999999999976990355-----------489434999999899
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHH-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 9999860399889980766671999999999998711108-9689998057430420-7969998097587713967883
Q 000774 420 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 497 (1293)
Q Consensus 420 ~lAral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~-~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~ 497 (1293)
+|||||..+|+++|+||||++||+.+...+++.+.....+ +.|+|+||||+.++.. ||||++|++|++++.|+++++.
T Consensus 150 aiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 98640105898687446556589888567999999998646978999838999999869999999799999987999997
Q ss_pred HC
Q ss_conf 14
Q 000774 498 NN 499 (1293)
Q Consensus 498 ~~ 499 (1293)
++
T Consensus 230 ~~ 231 (240)
T d3dhwc1 230 SH 231 (240)
T ss_dssp CS
T ss_pred HC
T ss_conf 28
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-38 Score=310.38 Aligned_cols=208 Identities=23% Similarity=0.357 Sum_probs=177.5
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCE
Q ss_conf 39999889993699998200013896499889999699998899999995277788636999996168989688855016
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
-++++||+++ .+|+++||+|++||++||+||||||||||+++|.|+. |++|+|.++|.++...+...++...+
T Consensus 3 il~~~dv~~~------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCT------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCC------CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 9999874157------1555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EECCCCCC-CCCCHHHHCCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC--
Q ss_conf 87266654-56567660477999--99878999999930999998715995136312999999458999999998513--
Q 000774 988 IIPQSPVL-FSGTVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR-- 1062 (1293)
Q Consensus 988 ~v~Q~~~l-f~~ti~~nl~~~~~--~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~-- 1062 (1293)
|++|+... |..++.+++..+.. ...+.+.++++. .+++...+.....||||||||+++|||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA-----------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHH-----------TTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH-----------CCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 4512135774420988764100146689999999986-----------59876767684456998899999999998517
Q ss_pred -----CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCHHHC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf -----998899838888999998999999999882-89479997059310101-488999959858664392466404
Q 000774 1063 -----RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133 (1293)
Q Consensus 1063 -----~p~iliLDEpts~lD~~t~~~i~~~l~~~~-~~~tvi~vsH~~~~~~~-~d~v~vl~~G~i~~~g~~~~l~~~ 1133 (1293)
+|+||||||||++||+.+...+++.|+++. .++|+|++||+++.+.. |||+++|++|++++.|+++|++.+
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 133899889997187777898999999999999986799999996779999997999999979989998899998188
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7.1e-38 Score=303.97 Aligned_cols=204 Identities=28% Similarity=0.432 Sum_probs=168.6
Q ss_pred CEEEEEEEEECCCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE-----------------
Q ss_conf 289984589718999999400002774399499999399984899999994598999987325-----------------
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 346 (1293)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~----------------- 346 (1293)
.|+++|++++|+ +..+|+|+||++++||+++|+|+||||||||+++|+|.++|++|.+..
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 699997899989---99988150668869979999989998299999999747667899779999993367752000023
Q ss_pred --------ECCCEEEECCCCCCC-CCCHHHHHCCCC----CCCH----HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf --------409189990776546-724899872599----9998----89999999809714772099998630267998
Q 000774 347 --------IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 409 (1293)
Q Consensus 347 --------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~g~ 409 (1293)
.+..|||++|++.++ ..||.||+.++. ..+. ++..+.++..++.+... .....
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ----------GKYPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHH----------TSCGG
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH----------CCCCC
T ss_conf 51767999745448998332314110102136565787629998999999999999829952443----------06822
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH-CCEEEEEECCEEE
Q ss_conf 779279999999998603998899807666719999999999987111089689998057430420-7969998097587
Q 000774 410 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK 488 (1293)
Q Consensus 410 ~LSGGQkqRi~lAral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~ 488 (1293)
+||||||||++|||||..+|+++|+||||++||+.+.+.+++.+.....++.|+|+||||+..+.. ||||++|++|+++
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 05677888989999984399878852455568878888998765541036883389948999999869999999799999
Q ss_pred EECCHHHHHHCC
Q ss_conf 713967883140
Q 000774 489 EEGTFEDLSNNG 500 (1293)
Q Consensus 489 ~~G~~~~l~~~~ 500 (1293)
+.|+++++.++.
T Consensus 229 ~~g~~~ev~~~P 240 (258)
T d1b0ua_ 229 EEGDPEQVFGNP 240 (258)
T ss_dssp EEECHHHHHHSC
T ss_pred EECCHHHHHHCC
T ss_conf 984999998389
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7.2e-39 Score=311.63 Aligned_cols=200 Identities=27% Similarity=0.408 Sum_probs=159.0
Q ss_pred CEEEEEEEEECCCCCC-CCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE----------------
Q ss_conf 2899845897189999-99400002774399499999399984899999994598999987325----------------
Q 000774 284 AISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 346 (1293)
Q Consensus 284 ~i~~~~~~~~~~~~~~-~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~---------------- 346 (1293)
.|+++|++++|+.+.. ..+|+|+||++++||+++|+|+||||||||+++|+|.++|++|.+..
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHH
T ss_conf 98999079994899820898713377884997999988999982165575068877776626999998576885551231
Q ss_pred ECCCEEEECCCCCCC-CCCHHHHHCCCC------CCCH-HHHHHH---HHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 409189990776546-724899872599------9998-899999---99809714772099998630267998779279
Q 000774 347 IRGTVAYVPQVSWIF-NATVRDNILFGS------AFEP-ARYEKA---IDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 415 (1293)
Q Consensus 347 ~~~~i~~v~Q~~~l~-~~Tv~eni~~g~------~~~~-~~~~~~---~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQ 415 (1293)
.+..|||++|++.++ ..||.||+.++. ..+. +...++ ++..++.+. ..+....+|||||
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~p~~LSGGq 150 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----------FANHKPNQLSGGQ 150 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGG----------GTTCCGGGSCHHH
T ss_pred HCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHH----------HHCCCHHHCCHHH
T ss_conf 255577880412417686688877578887224789999999999998876242345----------5348802389999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCCCHHHHCCEEEEEECCEEEEECCH
Q ss_conf 9999999986039988998076667199999999999871110-89689998057430420796999809758771396
Q 000774 416 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 493 (1293)
Q Consensus 416 kqRi~lAral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~G~~ 493 (1293)
|||++|||||..+|+++++||||++||+.+.+.+++.+.+... .+.|+|+||||+..+..||||++|++|+|+++|+.
T Consensus 151 kQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 151 QQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 9999987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.5e-37 Score=301.53 Aligned_cols=201 Identities=22% Similarity=0.372 Sum_probs=164.1
Q ss_pred CEEEEEEEEECCCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEC--------------C
Q ss_conf 28998458971899999940000277439949999939998489999999459899998732540--------------9
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--------------G 349 (1293)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~~~--------------~ 349 (1293)
.++++|++++|+ +.++|+|+||++++||+++|+|+||||||||+++|+|.++|++|.+ .+. .
T Consensus 4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I-~~~g~~i~~~~~~~~~~~ 79 (254)
T d1g6ha_ 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV-YFENKDITNKEPAELYHY 79 (254)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECTTCCHHHHHHH
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCHHHHHHHHH
T ss_conf 699977899979---9688712179988997999999999849999999977976887379-999996640569999983
Q ss_pred CEEEECCCCCCC-CCCHHHHHCCCCCC-----------------CHHHHHHH---HHHCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 189990776546-72489987259999-----------------98899999---9980971477209999863026799
Q 000774 350 TVAYVPQVSWIF-NATVRDNILFGSAF-----------------EPARYEKA---IDVTSLQHDLDLLPGGDVTEIGERG 408 (1293)
Q Consensus 350 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~-----------------~~~~~~~~---~~~~~l~~~~~~l~~~~~~~i~~~g 408 (1293)
.|+|++|++.+| +.||.||+.++... ..+...++ ++...+. ...+...
T Consensus 80 gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~ 148 (254)
T d1g6ha_ 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-----------HLYDRKA 148 (254)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-----------GGTTSBG
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC-----------HHCCCCH
T ss_conf 38725776424788742321430133303450456654213532899999999998761963-----------0205953
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH-HCCEEEEEECCEE
Q ss_conf 877927999999999860399889980766671999999999998711108968999805743042-0796999809758
Q 000774 409 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMV 487 (1293)
Q Consensus 409 ~~LSGGQkqRi~lAral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i 487 (1293)
.+||||||||++|||||..+|+++||||||++||+.+.+.+++.+.....++.|+++|||+++++. .||+|++|++|++
T Consensus 149 ~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~i 228 (254)
T d1g6ha_ 149 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 228 (254)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf 56991888899999999759272324397656999999999999999997899899994769999986999999969989
Q ss_pred EEECCHHHHHHC
Q ss_conf 771396788314
Q 000774 488 KEEGTFEDLSNN 499 (1293)
Q Consensus 488 ~~~G~~~~l~~~ 499 (1293)
+++|+++|+.++
T Consensus 229 v~~g~~~e~~~~ 240 (254)
T d1g6ha_ 229 IAEGRGEEEIKN 240 (254)
T ss_dssp EEEEESHHHHHH
T ss_pred EEEECHHHHHHC
T ss_conf 999668998654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=6e-38 Score=304.51 Aligned_cols=208 Identities=23% Similarity=0.363 Sum_probs=167.1
Q ss_pred CCEEEEEEEEECCCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE-------------ECC
Q ss_conf 9289984589718999999400002774399499999399984899999994598999987325-------------409
Q 000774 283 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 349 (1293)
Q Consensus 283 ~~i~~~~~~~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~-------------~~~ 349 (1293)
..++++|++++|+ +..+|+|+||++++||+++|+||||||||||+++|+|.++|++|.+.. .+.
T Consensus 5 ~~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~ 81 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred EEEEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 0799961899989---9888830257888997999999999859999999967888880389842443446608888874
Q ss_pred CEEEECCCCCCC-CCCHHHHHCCCCC--CCHHHHHHHHHHC-CCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 189990776546-7248998725999--9988999999980-97147720999986302679987792799999999986
Q 000774 350 TVAYVPQVSWIF-NATVRDNILFGSA--FEPARYEKAIDVT-SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 425 (1293)
Q Consensus 350 ~i~~v~Q~~~l~-~~Tv~eni~~g~~--~~~~~~~~~~~~~-~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAral 425 (1293)
.++|+||++.+| ..||.||+.++.. ...+...+..+.. .+...+. ...+....+||||||||++|||||
T Consensus 82 gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~LSGG~~Qrv~iAraL 154 (240)
T d1ji0a_ 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-------ERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-------TTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHH-------HHHHCCHHHCCHHHHHHHHHHHHH
T ss_conf 2355676554577636999999888732788899999999998741768-------887585433899999999999999
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH-HCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 0399889980766671999999999998711108968999805743042-07969998097587713967883140
Q 000774 426 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 500 (1293)
Q Consensus 426 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~~t~i~vtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 500 (1293)
..+|++++|||||++||+.+.+.+++.+.+...++.|++++||++..+. .||+|++|++|++++.|+++++.++.
T Consensus 155 ~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred HHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 8299874003988679999999999999999968998999958899999969999999899999984899984298
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.6e-37 Score=297.73 Aligned_cols=202 Identities=25% Similarity=0.410 Sum_probs=167.9
Q ss_pred CEEEEEEEEECCCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE-----------ECCCEE
Q ss_conf 289984589718999999400002774399499999399984899999994598999987325-----------409189
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 352 (1293)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~-----------~~~~i~ 352 (1293)
+|+++|++++|+ ++++|+|+||++++||++||+|+||||||||+++|+|+++|++|.... .+..++
T Consensus 2 aI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~ 78 (238)
T d1vpla_ 2 AVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 78 (238)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CEEEEEEEEEEC---CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHEE
T ss_conf 789995899999---99998062568848979999999999999999999669887888799986724468398872186
Q ss_pred EECCCCCCC-CCCHHHHHCCCC---CCCHHHH----HHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 990776546-724899872599---9998899----99999809714772099998630267998779279999999998
Q 000774 353 YVPQVSWIF-NATVRDNILFGS---AFEPARY----EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 424 (1293)
Q Consensus 353 ~v~Q~~~l~-~~Tv~eni~~g~---~~~~~~~----~~~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAra 424 (1293)
|+||++.++ +.|+.||+.+.. ..+..+. .+.++...+.+ .......+||||||||++||||
T Consensus 79 ~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~lSgG~~qrv~iA~a 147 (238)
T d1vpla_ 79 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE-----------KIKDRVSTYSKGMVRKLLIARA 147 (238)
T ss_dssp EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGG-----------GGGSBGGGCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHHHHHHHCCHHHHHHHHHHHH
T ss_conf 75001546878667788898998617998999999999998679788-----------8850453379989899999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 603998899807666719999999999987111089689998057430420-796999809758771396788314
Q 000774 425 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 425 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 499 (1293)
|+.+|++++|||||++||+.+.+.+++.+......++|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 148 l~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 148 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 8659998873379889798999999999999996599899995989999996999999989999999289999865
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.1e-35 Score=286.94 Aligned_cols=190 Identities=25% Similarity=0.405 Sum_probs=153.9
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCE
Q ss_conf 39999889993699998200013896499889999699998899999995277788636999996168989688855016
Q 000774 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 987 (1293)
Q Consensus 908 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 987 (1293)
.|+++|++++|+. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+ .+.+++
T Consensus 2 ~lev~~ls~~y~~---~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF 73 (200)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEE
T ss_pred EEEEEEEEEEECC---EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCEE
T ss_conf 5999989999399---28842088985998999999999719999999966205677889999896267-----367089
Q ss_pred EECCCCCCCCC-CHHHHCCC----C-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 87266654565-67660477----9-999987899999993099999871599513631299999945899999999851
Q 000774 988 IIPQSPVLFSG-TVRFNLDP----F-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 1061 (1293)
Q Consensus 988 ~v~Q~~~lf~~-ti~~nl~~----~-~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 1061 (1293)
|+||+..++.. |+.+|+.. + ....+.++.++++..++. +++ +...+||||||||+++|||++
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~----~~~~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL--------DLK----KKLGELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC--------CTT----SBGGGSCHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC--------CCC----CCCCCCCCCHHHHHHHHHHHH
T ss_conf 99501357888289999999997548863799999999874885--------630----126868971888899999886
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCEEEEEEC
Q ss_conf 399889983888899999899999999988289479997059310101488999959
Q 000774 1062 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDS 1118 (1293)
Q Consensus 1062 ~~p~iliLDEpts~lD~~t~~~i~~~l~~~~~~~tvi~vsH~~~~~~~~d~v~vl~~ 1118 (1293)
.+|+++||||||++||+.++..+++.|.+..+++++++++|+. .+..||++.+|.+
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 4998999868620169999999999999998679999999916-2544161234010
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.2e-35 Score=284.73 Aligned_cols=198 Identities=22% Similarity=0.382 Sum_probs=156.4
Q ss_pred EEEEEEEEECCCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE----------ECCCEEEE
Q ss_conf 89984589718999999400002774399499999399984899999994598999987325----------40918999
Q 000774 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 354 (1293)
Q Consensus 285 i~~~~~~~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~----------~~~~i~~v 354 (1293)
+++ ++...|+. ..+ |+||++. +++++|+||||||||||+++|+|+++|++|.+.. .+..|||+
T Consensus 3 l~v-~~~k~~g~----~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v 75 (240)
T d2onka1 3 LKV-RAEKRLGN----FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp EEE-EEEEEETT----EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEE-EEEEEECC----EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEE
T ss_conf 999-99999899----999-9999749-9799999799980999999997399989628999999988699899285225
Q ss_pred CCCCCCC-CCCHHHHHCCCCC-CCHHH----HHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 0776546-7248998725999-99889----9999998097147720999986302679987792799999999986039
Q 000774 355 PQVSWIF-NATVRDNILFGSA-FEPAR----YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 428 (1293)
Q Consensus 355 ~Q~~~l~-~~Tv~eni~~g~~-~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAral~~~ 428 (1293)
+|++.+| ..||.||+.|+.. .+..+ ..+.++.+++.+ ..+.....||||||||++|||||+.+
T Consensus 76 ~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~-----------~~~~~~~~LSGG~kQRvaiAral~~~ 144 (240)
T d2onka1 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-----------LLDRKPARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTT-----------TTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHHCCHHHCCHHHHHHHHHHHHHHCC
T ss_conf 2314435220155766653233677889999999998638375-----------66579444899998999998777516
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 9889980766671999999999998711108-9689998057430420-7969998097587713967883140
Q 000774 429 SDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 500 (1293)
Q Consensus 429 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~-~~t~i~vtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 500 (1293)
|++++|||||++||+.+...+++.+.....+ +.|+|+|||++..+.. ||+|++|++|++++.|+++++.+..
T Consensus 145 P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~ 218 (240)
T d2onka1 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCC
T ss_conf 77067528655588799999999999998743976999818999999969999999899999990699983299
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-32 Score=263.53 Aligned_cols=197 Identities=20% Similarity=0.297 Sum_probs=158.8
Q ss_pred CEEEEEEEEECCCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECC-------------C
Q ss_conf 289984589718999999400002774399499999399984899999994598999987325409-------------1
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-------------T 350 (1293)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~~~~-------------~ 350 (1293)
.++++|++.+ ..|+++||+|++||+++|+|+||||||||+++|+|.. |++|.+ ...+ .
T Consensus 3 il~~~dv~~~-------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I-~~~g~~i~~~~~~~~~~~ 73 (231)
T d1l7vc_ 3 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI-QFAGQPLEAWSATKLALH 73 (231)
T ss_dssp EEEEEEECCT-------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEE-EESSSBGGGSCHHHHHHH
T ss_pred EEEEECCCCC-------CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEE-EECCEECCCCCHHHHHHH
T ss_conf 9999874157-------1555888899489899999899980999999994887-995599-999999986998999864
Q ss_pred EEEECCCCCC-CCCCHHHHHCCCCCC--CHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 8999077654-672489987259999--9889999999809714772099998630267998779279999999998603
Q 000774 351 VAYVPQVSWI-FNATVRDNILFGSAF--EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 427 (1293)
Q Consensus 351 i~~v~Q~~~l-~~~Tv~eni~~g~~~--~~~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAral~~ 427 (1293)
.+|++|.... +..++.+++.++... ..+...+.++..++.+ .++....+||||||||++|||++++
T Consensus 74 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~LSgG~~Qrv~iA~al~~ 142 (231)
T d1l7vc_ 74 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQ 142 (231)
T ss_dssp EEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTT-----------TTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 02451213577442098876410014668999999998659876-----------7676844569988999999999985
Q ss_pred -------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH-HHCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf -------9988998076667199999999999871110896899980574304-20796999809758771396788314
Q 000774 428 -------NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNN 499 (1293)
Q Consensus 428 -------~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~~t~i~vtH~~~~l-~~~d~i~~l~~G~i~~~G~~~~l~~~ 499 (1293)
+|+++||||||++||+.....+++.+......+.|+|++||++..+ +.||++++|++|++++.|+++++.++
T Consensus 143 ~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 143 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp HCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred HCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 17133899889997187777898999999999999986799999996779999997999999979989998899998188
Q ss_pred C
Q ss_conf 0
Q 000774 500 G 500 (1293)
Q Consensus 500 ~ 500 (1293)
.
T Consensus 223 ~ 223 (231)
T d1l7vc_ 223 P 223 (231)
T ss_dssp H
T ss_pred H
T ss_conf 6
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.98 E-value=1.8e-31 Score=254.55 Aligned_cols=183 Identities=21% Similarity=0.373 Sum_probs=142.4
Q ss_pred CEEEEEEEEECCCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE-------ECCCEEEECC
Q ss_conf 289984589718999999400002774399499999399984899999994598999987325-------4091899907
Q 000774 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVPQ 356 (1293)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~-------~~~~i~~v~Q 356 (1293)
.|+++|++++|+ +++|+|+||++++|++++|+|+||||||||+++|+|.++|++|.+.. .++.++|+||
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~ 77 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 77 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEE
T ss_conf 599998999939----9288420889859989999999997199999999662056778899998962673670899950
Q ss_pred CCCCC-CCCHHHHHCC-----CCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 76546-7248998725-----99999889999999809714772099998630267998779279999999998603998
Q 000774 357 VSWIF-NATVRDNILF-----GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 430 (1293)
Q Consensus 357 ~~~l~-~~Tv~eni~~-----g~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAral~~~~~ 430 (1293)
++.++ ..|+.+++.+ +...++.++.++++...+.+ +.++..+||||||||++||||++.+|+
T Consensus 78 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~LSgG~~qrv~ia~al~~~~~ 145 (200)
T d1sgwa_ 78 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD------------LKKKLGELSQGTIRRVQLASTLLVNAE 145 (200)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC------------TTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC------------CCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 13578882899999999975488637999999998748856------------301268689718888999998864998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHCCEEEEEEC
Q ss_conf 899807666719999999999987111089689998057430420796999809
Q 000774 431 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 484 (1293)
Q Consensus 431 illlDEpts~LD~~~~~~i~~~l~~~~~~~~t~i~vtH~~~~l~~~d~i~~l~~ 484 (1293)
++||||||++||+.+.+.+++.+......+.++|+.+| +.+..||.+.+|++
T Consensus 146 llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~--~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR--EELSYCDVNENLHK 197 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES--SCCTTSSEEEEGGG
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE--CHHHHCCHHHHEEE
T ss_conf 99986862016999999999999999867999999991--62544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.91 E-value=3.5e-19 Score=159.82 Aligned_cols=312 Identities=12% Similarity=0.103 Sum_probs=233.1
Q ss_pred HHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999701-05999999999999999886466466451367876888833--8999999999999999999999999
Q 000774 573 KVLSRYKDALG-GLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL--FYNTIYSLLSFGQVLVTLANSYWLI 649 (1293)
Q Consensus 573 ~~~~~y~~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~ 649 (1293)
+.++++++..+ .++.+++.+++.++...+....|.+++..+|.......... ++...+.++.++..++.++..++..
T Consensus 2 k~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~ 81 (319)
T d3b60a2 2 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCIS 81 (319)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68999999999999999999999999999999999999999998744687789999999999999976453354665443
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999973994210124611479987115345977889999999999999999999999999899999
Q 000774 650 ISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 729 (1293)
Q Consensus 650 ~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ilsrlt~Di~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1293)
..+.+...+++.++++++++.|+.+|+++++|++++|+++|++.+...+.......+..+..++..++.++..+|...++
T Consensus 82 ~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li 161 (319)
T d3b60a2 82 WVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSII 161 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 43100011000477776501011110233322111112121210000111112001123344566888887652002102
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999996182999999998569999994079999999999999999999999998899
Q 000774 730 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW 809 (1293)
Q Consensus 730 ~~~~li~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (1293)
++..+++.+.......+...+..+...+..+...+...|.++|++++|+++.++++.+++.+..++..+..........+
T Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (319)
T d3b60a2 162 LVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSI 241 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56689999998876666877878988764456778877762487235311101024566666531356778888877774
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999999999998--734865421334989999999999999999999999999999979999985210589
Q 000774 810 LAIRLEIVGGLMIWLTATFAV--VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 887 (1293)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~ 887 (1293)
......++..+...++.+++. ...+..+ .+.+..++.+...+..|+..+.......+++..+.+|+.++++.|
T Consensus 242 ~~~~~~~~~~~~~~~~l~~g~~~~~~g~it-----~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~ 316 (319)
T d3b60a2 242 SDPIIQLIASLALAFVLYAASFPSVMDSLT-----AGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 316 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSTTSSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 064010000002379999999999809978-----999999999999999999999999999999999999999996699
Q ss_pred CC
Q ss_conf 98
Q 000774 888 SE 889 (1293)
Q Consensus 888 ~e 889 (1293)
+|
T Consensus 317 ~E 318 (319)
T d3b60a2 317 QE 318 (319)
T ss_dssp CS
T ss_pred CC
T ss_conf 89
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.91 E-value=2.3e-19 Score=161.27 Aligned_cols=258 Identities=15% Similarity=0.104 Sum_probs=218.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 9999999999999999999999999999999999999999995289654317893589999999899999999-999999
Q 000774 13 YAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTL 91 (1293)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~if~k~l~l~~~~~~~~~~g~i~~~lt~Di~~i~~~~-~~l~~~ 91 (1293)
+++.+++..++..++.....+...+.+.++...++..+|+|+++.+..++++.++|++.+++++|++.+.+.+ ..+..+
T Consensus 58 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~ 137 (319)
T d3b60a2 58 MPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITV 137 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99999999997645335466544343100011000477776501011110233322111112121210000111112001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 98999999999999999869999999999999999999999999999999999999999999999458999984460999
Q 000774 92 WSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSF 171 (1293)
Q Consensus 92 ~~~~l~ii~~~~ll~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 171 (1293)
+..++.++++++++++..+..+++.++.+++...+..+..++..+..++..+..++..+...|.++|++++|.+++|+.+
T Consensus 138 ~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~ 217 (319)
T d3b60a2 138 VREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVE 217 (319)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHH
T ss_conf 12334456688888765200210256689999998876666877878988764456778877762487235311101024
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999989--99999999987706988978899999999999999999999999
Q 000774 172 QSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV--LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMIT 249 (1293)
Q Consensus 172 ~~~~~~~r~~e~~~~~~~~~l~~~~~~~~~~~~~--~v~~~~~g~~~~~~~~l~~~~~~~~l~l~~~l~~pl~~l~~~~~ 249 (1293)
.+++++..++..+...+................. .+.++++|.+.+..|.++.|.+++++.+...+..|+..+++.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~ 297 (319)
T d3b60a2 218 TKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNA 297 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56666653135677888887777406401000000237999999999980997899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999998621110
Q 000774 250 QVVNANVSLKRMEEFLLAEEK 270 (1293)
Q Consensus 250 ~~~~~~~s~~Ri~~~l~~~~~ 270 (1293)
.+.++.++.+|+.++++.|++
T Consensus 298 ~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 298 QFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999999669989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.90 E-value=7.2e-20 Score=165.10 Aligned_cols=244 Identities=17% Similarity=0.210 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999995289654317893589999999899999999-999999989999999999
Q 000774 25 VLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRIIISLV 103 (1293)
Q Consensus 25 ~~~~~~~~~~~~~~~~r~~~~l~~~if~k~l~l~~~~~~~~~~g~i~~~lt~Di~~i~~~~-~~l~~~~~~~l~ii~~~~ 103 (1293)
.++.....+...+.+.++..++|..+|+|+++++..++++.++|++++++++|++.+++.+ ..+..++...+.++++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~ 154 (323)
T d2hyda2 75 PPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALS 154 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999999999985567788887665402332100012221100011113321001113454201114665334654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 99999869999999999999999999999999999999999999999999999458999984460999999999999999
Q 000774 104 LLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDEL 183 (1293)
Q Consensus 104 ll~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~r~~e~ 183 (1293)
++++..+.++++.++..++.+.+..++.++..+..++..+..++..+.+.|.++|+++||.+++|+.+.+++++..++..
T Consensus 155 ~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~ 234 (323)
T d2hyda2 155 IMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFL 234 (323)
T ss_dssp HHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCC
T ss_conf 40000146888999988777777764123332026778989999997878875597023467641110023302231111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999989--99999999987706988978899999999999999999999999999999999999
Q 000774 184 SWFRKAQFLAACNSFILNSIPV--LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRM 261 (1293)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~~--~v~~~~~g~~~~~~~~l~~~~~~~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri 261 (1293)
+...+................. .+..+++|.+.+..|.+++|.+++++.+...+..|+..++..+..+.++.++++||
T Consensus 235 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri 314 (323)
T d2hyda2 235 TRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRV 314 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 01567765200001111101205589999999999984998899999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q ss_conf 9986211
Q 000774 262 EEFLLAE 268 (1293)
Q Consensus 262 ~~~l~~~ 268 (1293)
.++++.|
T Consensus 315 ~elLd~e 321 (323)
T d2hyda2 315 FQLIDED 321 (323)
T ss_dssp HHHHTCC
T ss_pred HHHHCCC
T ss_conf 9997799
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.88 E-value=8.4e-19 Score=156.86 Aligned_cols=310 Identities=11% Similarity=0.129 Sum_probs=229.3
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC----HHH-----HHHHHHHHHHHHHHHHH
Q ss_conf 999999997010599999999999999988646646645136787688883----389-----99999999999999999
Q 000774 573 KVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGP----LFY-----NTIYSLLSFGQVLVTLA 643 (1293)
Q Consensus 573 ~~~~~y~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~-----~~~~~~l~~~~~~~~~~ 643 (1293)
|.+.+|.++. ++.+++.+++.++...+....|.+++..+|......... ... ...+..+.+...++.+.
T Consensus 3 Krl~~~~k~~--k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 3 KRYLQFVKPY--KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHGGG--HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999--99999999999999999999999999999998626774215568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999973994210124611479987115345977889999999999999999999999999
Q 000774 644 NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS 723 (1293)
Q Consensus 644 ~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ilsrlt~Di~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1293)
..++....+.+...++|.+++++++++|+.+|+++++|++++|+++|+..+++.....+...+..+..++..++.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999985567788887665402332100012221100011113321001113454201114665334654400001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999999999996182999999998569999994079999999999999999999999
Q 000774 724 TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVN 803 (1293)
Q Consensus 724 ~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1293)
|.+.++.++..++.+.....+.+..++..+...+..++..+.+.|.++|++++|+++.++++.+++.+..+...+.....
T Consensus 161 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~ 240 (323)
T d2hyda2 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240 (323)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHH
T ss_conf 46888999988777777764123332026778989999997878875597023467641110023302231111015677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998899999999999999999999998--734865421334989999999999999999999999999999979999985
Q 000774 804 MGANRWLAIRLEIVGGLMIWLTATFAV--VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 881 (1293)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~ 881 (1293)
.....+.......+..+...+..+++. ...+..+ .+.+..++.+...+..++..+.......+....+.+|+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s-----~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~ 315 (323)
T d2hyda2 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSIT-----VGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVF 315 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----HHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 652000011111012055899999999999849988-----999999999999999999999999999999999999999
Q ss_pred HHHCCCCC
Q ss_conf 21058998
Q 000774 882 NYIELPSE 889 (1293)
Q Consensus 882 ~~~~~~~e 889 (1293)
++++.++|
T Consensus 316 elLd~e~e 323 (323)
T d2hyda2 316 QLIDEDYD 323 (323)
T ss_dssp HHHTCCCS
T ss_pred HHHCCCCC
T ss_conf 99779998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.51 E-value=7.4e-16 Score=134.16 Aligned_cols=159 Identities=13% Similarity=0.077 Sum_probs=106.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCEEECCCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 89999699998899999995277788636999996168989688855016872666545656766047799999878999
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 1017 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~nl~~~~~~~~~~i~~ 1017 (1293)
+++|+||||||||||++.|+|.++|+.|.+.+.+.+....+...........++...++..+...+.....
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS--------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT---------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302---------
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC--CHHHHHHHHHHHHHHCCCC
Q ss_conf 99993099999871599513631299999945899999999851399889983888899--9998999999999882894
Q 000774 1018 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV--DVRTDALIQKTIREEFKSC 1095 (1293)
Q Consensus 1018 ~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iliLDEpts~l--D~~t~~~i~~~l~~~~~~~ 1095 (1293)
.+.+... ..+++|++++.++++++.++|+++++|||.... +......+.+.+.+ .++
T Consensus 73 ---------------~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~~ 131 (178)
T d1ye8a1 73 ---------------YGVNVQY----FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNV 131 (178)
T ss_dssp ---------------EEECHHH----HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTS
T ss_pred ---------------HHCCCCH----HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCC--CCC
T ss_conf ---------------3037625----6653201378999999740997423027773100457999999987505--797
Q ss_pred EEEEEECCCCHHHCCCEEEEEECCEEEEECC
Q ss_conf 7999705931010148899995985866439
Q 000774 1096 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1126 (1293)
Q Consensus 1096 tvi~vsH~~~~~~~~d~v~vl~~G~i~~~g~ 1126 (1293)
++|+++|+.+....||++..+.+|++++.+.
T Consensus 132 ~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 132 NVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp EEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred EEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 8999974477898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=1.3e-11 Score=101.49 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHCCCEEEEE
Q ss_conf 9994589999999985----139988998388889999989999999998828-94799970593101014889999
Q 000774 1045 NFSVGQRQLLSLSRAL----LRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIIDCDRILLL 1116 (1293)
Q Consensus 1045 ~LSgGqkqrl~lAral----l~~p~iliLDEpts~lD~~t~~~i~~~l~~~~~-~~tvi~vsH~~~~~~~~d~v~vl 1116 (1293)
.+|||||.++++|-.+ ..++++++||||+++||+.....+.+.|.+... +.-+|++||+...+..+|+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.22 E-value=7.4e-13 Score=111.02 Aligned_cols=147 Identities=14% Similarity=0.023 Sum_probs=93.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCC-EEEECCC-----------CCCCCCCHHHHHCCCCCCCHHHHHH
Q ss_conf 999993999848999999945989999873254091-8999077-----------6546724899872599999889999
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVPQV-----------SWIFNATVRDNILFGSAFEPARYEK 382 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~~~~~-i~~v~Q~-----------~~l~~~Tv~eni~~g~~~~~~~~~~ 382 (1293)
+++|+|+||||||||++.++|.+++..|........ ..+-.|. ..++..+......++.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS--------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT---------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302---------
Q ss_pred HHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC--CHHHHHHHHHHHHHHHCCC
Q ss_conf 99980971477209999863026799877927999999999860399889980766671--9999999999987111089
Q 000774 383 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL--DAHVGRQVFDRCIRGELSG 460 (1293)
Q Consensus 383 ~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAral~~~~~illlDEpts~L--D~~~~~~i~~~l~~~~~~~ 460 (1293)
..+......+++|+++|.++++++..+|+++++|||.... +......+.+. + ...+
T Consensus 73 -------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~-l--~~~~ 130 (178)
T d1ye8a1 73 -------------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI-M--HDPN 130 (178)
T ss_dssp -------------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH-H--TCTT
T ss_pred -------------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHH-H--CCCC
T ss_conf -------------------30376256653201378999999740997423027773100457999999987-5--0579
Q ss_pred CEEEEEECCCCHHHHCCEEEEEECCEEEEECC
Q ss_conf 68999805743042079699980975877139
Q 000774 461 KTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 492 (1293)
Q Consensus 461 ~t~i~vtH~~~~l~~~d~i~~l~~G~i~~~G~ 492 (1293)
.++++++|+......++++..+.+|++..-+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.11 E-value=1.7e-09 Score=85.09 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCEEEEE--EC
Q ss_conf 999458999999998----513998899838888999998999999999882894799970593101014889999--59
Q 000774 1045 NFSVGQRQLLSLSRA----LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL--DS 1118 (1293)
Q Consensus 1045 ~LSgGqkqrl~lAra----ll~~p~iliLDEpts~lD~~t~~~i~~~l~~~~~~~tvi~vsH~~~~~~~~d~v~vl--~~ 1118 (1293)
.+|+|+|+.+.++.. ...++.++++|||-++|+|...+.+.+.|++..++.-+|++||+...++.+|+++.+ ++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 8
Q 000774 1119 G 1119 (1293)
Q Consensus 1119 G 1119 (1293)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.76 E-value=3.3e-07 Score=67.49 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHCCEEEEE--
Q ss_conf 8779279999999998----6039988998076667199999999999871110896899980574304207969998--
Q 000774 409 VNISGGQKQRVSMARA----VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV-- 482 (1293)
Q Consensus 409 ~~LSGGQkqRi~lAra----l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~~t~i~vtH~~~~l~~~d~i~~l-- 482 (1293)
..+|+|||+...++.. ....+.++++|||-+||+|...+.+.+.+ ....++.-+|++||...+++.+|+++.+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l-~~~~~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLL-KENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHH-HHHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHH-HHHCCCCEEEEEECCHHHHHHCCCEEEEEE
T ss_conf 1025777667777766556542267445543203357978999999999-985548879999898899973242899999
Q ss_pred ECC
Q ss_conf 097
Q 000774 483 HEG 485 (1293)
Q Consensus 483 ~~G 485 (1293)
.+|
T Consensus 297 ~~g 299 (308)
T d1e69a_ 297 VNG 299 (308)
T ss_dssp SSS
T ss_pred ECC
T ss_conf 699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.52 E-value=3.7e-07 Score=67.08 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHCCEEEEE
Q ss_conf 87792799999999986----039988998076667199999999999871110896899980574304207969998
Q 000774 409 VNISGGQKQRVSMARAV----YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 482 (1293)
Q Consensus 409 ~~LSGGQkqRi~lAral----~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~~t~i~vtH~~~~l~~~d~i~~l 482 (1293)
..||||||.+++||-.+ +.++++++||||+++||+.....+.+.+......+.-+|++||+..+++.+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.57 E-value=0.0016 Score=39.11 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=32.2
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCHHHC
Q ss_conf 3998899838888999998999999999882--89479997059310101
Q 000774 1062 RRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID 1109 (1293)
Q Consensus 1062 ~~p~iliLDEpts~lD~~t~~~i~~~l~~~~--~~~tvi~vsH~~~~~~~ 1109 (1293)
.+..++|+||...|-++.....+-..+-+.. .++.++++||..+....
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l 162 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL 162 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHHH
T ss_conf 97727855454568623320025888888886237613786520233322
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=0.0021 Score=38.14 Aligned_cols=47 Identities=11% Similarity=0.110 Sum_probs=30.8
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC-C-CCEEEEEECCCCHH
Q ss_conf 139988998388889999989999999-99882-8-94799970593101
Q 000774 1061 LRRSKILVLDEATAAVDVRTDALIQKT-IREEF-K-SCTMLIIAHRLNTI 1107 (1293)
Q Consensus 1061 l~~p~iliLDEpts~lD~~t~~~i~~~-l~~~~-~-~~tvi~vsH~~~~~ 1107 (1293)
..+..++|+||+..|-++.....+-.+ +..+. + .+.++++||..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 54660885322235877456667898764543204544289852468776
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=0.0032 Score=36.77 Aligned_cols=141 Identities=14% Similarity=0.151 Sum_probs=71.6
Q ss_pred CEEEEEEEEECC----CCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCCCCEEECCCE
Q ss_conf 289984589718----999999400002774399499999399984899999994--------59899998732540918
Q 000774 284 AISIRNGYFSWD----SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML--------GELPPVSDASAVIRGTV 351 (1293)
Q Consensus 284 ~i~~~~~~~~~~----~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~--------g~~~~~~g~~~~~~~~i 351 (1293)
.+.+++..- | -..+..+-.|+++.- .+..+.|.|||.+||||+++.++ |.+-|-+.
T Consensus 11 ~l~i~~~rH--Plle~~~~~~~VpNdi~l~~-~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~--------- 78 (234)
T d1wb9a2 11 GIRITEGRH--PVVEQVLNEPFIANPLNLSP-QRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQK--------- 78 (234)
T ss_dssp CEEEEEECC--TTHHHHCSSCCCCEEEEECS-SSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSE---------
T ss_pred CEEEEEEEC--CEEECCCCCCCCCEEEEECC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCC---------
T ss_conf 689997378--77974469982640579889-953999954673136899998799999987297674176---------
Q ss_pred EEECCCCCCC-CCCHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9990776546-724899872599999889999999809714772099998630267998779279999999998603998
Q 000774 352 AYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 430 (1293)
Q Consensus 352 ~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAral~~~~~ 430 (1293)
+-++--+.+| .--..|++.-|.. -=..+-+|+.-.---..+..
T Consensus 79 a~~~~~d~I~~~~~~~d~~~~~~S------------------------------------~F~~E~~~~~~il~~~~~~s 122 (234)
T d1wb9a2 79 VEIGPIDRIFTRVGAADDLASGRS------------------------------------TFMVEMTETANILHNATEYS 122 (234)
T ss_dssp EEECCCCEEEEEEC-----------------------------------------------CHHHHHHHHHHHHHCCTTE
T ss_pred EECCCCHHHEEEECCCCCCCCCHH------------------------------------HHHHHHHHHHHHHHHCCCCC
T ss_conf 661344202348746753436531------------------------------------89999999999997454660
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHH-CC-CCEEEEEECCCCH
Q ss_conf 899807666719999999999987111-08-9689998057430
Q 000774 431 VFIFDDPLSALDAHVGRQVFDRCIRGE-LS-GKTRVLVTNQLHF 472 (1293)
Q Consensus 431 illlDEpts~LD~~~~~~i~~~l~~~~-~~-~~t~i~vtH~~~~ 472 (1293)
++|+||+..+=++.....+...++... .+ +..++++||....
T Consensus 123 LvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 123 LVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp EEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 88532223587745666789876454320454428985246877
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.41 E-value=0.0018 Score=38.63 Aligned_cols=122 Identities=15% Similarity=0.233 Sum_probs=68.5
Q ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCCCCEEECCCEEEECCCCCCC-CCCHHHHHCCCCCCCH
Q ss_conf 2774399499999399984899999994--------598999987325409189990776546-7248998725999998
Q 000774 307 NLDIPVGSLVAIVGGTGEGKTSLISAML--------GELPPVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEP 377 (1293)
Q Consensus 307 ~l~i~~G~~~~ivG~~GsGKSTLl~~l~--------g~~~~~~g~~~~~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~ 377 (1293)
++.+. ++.+.|.|||.+||||+++.+. |.+-|.+. +-++--..++ .--..|++.-+..
T Consensus 30 di~~~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~---------~~i~~~d~I~~~~~~~d~~~~~~S--- 96 (224)
T d1ewqa2 30 DLEMA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEE---------AHLPLFDGIYTRIGASDDLAGGKS--- 96 (224)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSE---------EEECCCSEEEEECCC------CCS---
T ss_pred EEEEC-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCC---------EEEEECCEEEEEECCCCCCCCCCC---
T ss_conf 58847-86799978873453234556589999985250461375---------199401169999877760237830---
Q ss_pred HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89999999809714772099998630267998779279999999998603998899807666719999999999987111
Q 000774 378 ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 457 (1293)
Q Consensus 378 ~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 457 (1293)
.-..+-+|+.-.---..+..++|+||...+=++.....+...++...
T Consensus 97 ---------------------------------tF~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L 143 (224)
T d1ewqa2 97 ---------------------------------TFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEAL 143 (224)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHH
T ss_conf ---------------------------------78986788987750289772785545456862332002588888888
Q ss_pred C-CCCEEEEEECCCCHHH
Q ss_conf 0-8968999805743042
Q 000774 458 L-SGKTRVLVTNQLHFLS 474 (1293)
Q Consensus 458 ~-~~~t~i~vtH~~~~l~ 474 (1293)
. .+...+++||..+...
T Consensus 144 ~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 144 HERRAYTLFATHYFELTA 161 (224)
T ss_dssp HHHTCEEEEECCCHHHHT
T ss_pred HHCCCCEEEEEECHHHHH
T ss_conf 623761378652023332
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.10 E-value=0.0076 Score=33.81 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=26.5
Q ss_pred CCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 82000138964998899996999988999999952
Q 000774 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 924 ~~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g 958 (1293)
+.|+++..-+.+|+.+.|.|++|+||||++.-+.-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 66888746978980899994799979999999997
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.017 Score=31.09 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=13.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 99889999699998899999995
Q 000774 935 PSDKVGIVGRTGAGKSSMLNTLF 957 (1293)
Q Consensus 935 ~Ge~~~ivG~~GsGKSTll~~l~ 957 (1293)
||+.+-|.|+.|+||||++--+.
T Consensus 28 pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 28 AGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHH
T ss_conf 89589999289998999999999
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.24 E-value=0.0038 Score=36.16 Aligned_cols=38 Identities=26% Similarity=0.478 Sum_probs=28.3
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 64998899996999988999999952777886369999
Q 000774 933 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 970 (1293)
Q Consensus 933 i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~ 970 (1293)
+..+.-+.|.|++||||||+++.|.+.++|+.=-|.+.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEECC
T ss_conf 98378889994035662578999865301456233113
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.12 E-value=0.0027 Score=37.35 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=27.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99889999699998899999995277788636999
Q 000774 935 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 969 (1293)
Q Consensus 935 ~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i 969 (1293)
+|+...++|+||+|||||+|.|.+......|.|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC
T ss_conf 69808997889877888877305355501068420
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.05 E-value=0.018 Score=30.96 Aligned_cols=36 Identities=17% Similarity=0.356 Sum_probs=30.1
Q ss_pred CCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 940000277439949999939998489999999459
Q 000774 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 301 ~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+.|+++...+.+|+.+.|.|++|+||||++.-++-.
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 668887469789808999947999799999999972
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=95.75 E-value=0.044 Score=27.96 Aligned_cols=54 Identities=20% Similarity=0.344 Sum_probs=32.4
Q ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHHHCEEECCCC
Q ss_conf 89999699998899999995---277788636999996168989688855016872666
Q 000774 938 KVGIVGRTGAGKSSMLNTLF---RIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP 993 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~---g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 993 (1293)
-++|+|+.|+|||||+..|+ |.. ...|++. +|....+..+.+..+.+.+-+.-.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~-~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~ 60 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAK-ERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVA 60 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC-HHHCCCH-HCCCCCCCHHHHHHHCCEEEEECC
T ss_conf 99999488980999999999970975-5306622-221135626988873876875102
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.70 E-value=0.04 Score=28.26 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=8.8
Q ss_pred CEEEEECCCCCCHHHHH
Q ss_conf 88999969999889999
Q 000774 937 DKVGIVGRTGAGKSSML 953 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll 953 (1293)
.++.++||+|+||||.+
T Consensus 12 ~vi~lvGptGvGKTTTi 28 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSC 28 (213)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
T ss_conf 89999899999889999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.69 E-value=0.046 Score=27.83 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=14.7
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 43994999993999848999999945
Q 000774 310 IPVGSLVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 310 i~~G~~~~ivG~~GsGKSTLl~~l~g 335 (1293)
+++|..+.|.|++|+|||+++.-++-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 86984999991899999999999999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=0.038 Score=28.43 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=10.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999939998489999999459
Q 000774 314 SLVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 314 ~~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
.+++++|++|+||||.+--|+-.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999989999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.00011 Score=47.87 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=25.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 8899996999988999999952777886369999961
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 973 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~ 973 (1293)
..+.|+||+|+|||||++.+.+.+....+.+.+.+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~ 38 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE 38 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 6999988999719999999999999779979999845
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.58 E-value=0.05 Score=27.50 Aligned_cols=25 Identities=40% Similarity=0.617 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9499999399984899999994598
Q 000774 313 GSLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 313 G~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
|=+++++|+.|+|||||++.|.|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.57 E-value=0.0064 Score=34.39 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=26.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9949999939998489999999459899998
Q 000774 312 VGSLVAIVGGTGEGKTSLISAMLGELPPVSD 342 (1293)
Q Consensus 312 ~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g 342 (1293)
+|...+++|+||+|||||+|.|.+......|
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~ 124 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVS 124 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCC
T ss_conf 6980899788987788887730535550106
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.56 E-value=0.0029 Score=37.05 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=13.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9889999699998899999995277
Q 000774 936 SDKVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 936 Ge~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
|..+.|+||+||||||+.+.|...+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7499998999999999999998458
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.51 E-value=0.053 Score=27.32 Aligned_cols=45 Identities=18% Similarity=0.417 Sum_probs=33.7
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
Q ss_conf 3998899838888999998999999999882894799970593101
Q 000774 1062 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 1107 (1293)
Q Consensus 1062 ~~p~iliLDEpts~lD~~t~~~i~~~l~~~~~~~tvi~vsH~~~~~ 1107 (1293)
.+.+++++||+-. +.......+.+.+......+.+|+++++.+.+
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 8724999424333-45431112210022135664300010211100
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.49 E-value=0.054 Score=27.28 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=14.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 998899996999988999999952777
Q 000774 935 PSDKVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 935 ~Ge~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
++.+++++||+|+||||.+-=|...+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 977999989999988999999999999
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.48 E-value=0.051 Score=27.48 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=10.0
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 889999699998899999995
Q 000774 937 DKVGIVGRTGAGKSSMLNTLF 957 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~ 957 (1293)
.++.++||+|+||||.+-=|.
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp EEEEEECSCCC----HHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998999999899999999
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.36 E-value=0.026 Score=29.67 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=25.3
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
Q ss_conf 99985139988998388889999989999999998828947999705931010
Q 000774 1056 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 1108 (1293)
Q Consensus 1056 lArall~~p~iliLDEpts~lD~~t~~~i~~~l~~~~~~~tvi~vsH~~~~~~ 1108 (1293)
+..+|-++|+++++.|.. |.+|.....++-. .|..|+.+-|--+...
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa~---tGhlV~tTlHa~~a~~ 266 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAVQASL---TGHLVMSTLHTNTAVG 266 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHHHHHH---TTCEEEEEECCSSSHH
T ss_pred HHHHHHHCCCEEEECCCC---CHHHHHHHHHHHH---CCCEEEEEECCCCHHH
T ss_conf 999984138889845768---7599999999972---4985899833676676
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.004 Score=35.99 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=11.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.++++|++|||||||++.|+..+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189998999999999999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.29 E-value=0.062 Score=26.81 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=10.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
.+.++|++|+||||.+--|+..
T Consensus 12 vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 12 LWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp EEEEECCTTTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999899999889999999999
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.27 E-value=0.024 Score=29.96 Aligned_cols=115 Identities=15% Similarity=0.205 Sum_probs=63.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCH
Q ss_conf 39949999939998489999999459899998732540918999077654672489987259999988999999980971
Q 000774 311 PVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 390 (1293)
Q Consensus 311 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~ 390 (1293)
.++-.+.+.||+||||||++..++............+-..+-| ...+-.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~------~~~~~~------------------------- 204 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEF------DIDGIG------------------------- 204 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCS------CCSSSE-------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC------CCCCCC-------------------------
T ss_conf 4105489876787774477999866625787469996267434------567887-------------------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 47720999986302679987792799999999986039988998076667199999999999871110896899980574
Q 000774 391 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 470 (1293)
Q Consensus 391 ~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~~t~i~vtH~~ 470 (1293)
...+.. ..|+.---++..+|-.+||+++..|.. |+++.....+.. ..|.-++..-|-.
T Consensus 205 ----------q~~v~~-----~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa----~tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 205 ----------QTQVNP-----RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQAS----LTGHLVMSTLHTN 262 (401)
T ss_dssp ----------EEECBG-----GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHH----HTTCEEEEEECCS
T ss_pred ----------EEEECC-----CCCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHHH----HCCCEEEEEECCC
T ss_conf ----------026558-----767799999999984138889845768---759999999997----2498589983367
Q ss_pred CHHHHCCE
Q ss_conf 30420796
Q 000774 471 HFLSQVDR 478 (1293)
Q Consensus 471 ~~l~~~d~ 478 (1293)
+-....+|
T Consensus 263 ~a~~~~~R 270 (401)
T d1p9ra_ 263 TAVGAVTR 270 (401)
T ss_dssp SSHHHHHH
T ss_pred CHHHHHHH
T ss_conf 66766543
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.20 E-value=0.0059 Score=34.66 Aligned_cols=27 Identities=22% Similarity=0.572 Sum_probs=24.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 949999939998489999999459899
Q 000774 313 GSLVAIVGGTGEGKTSLISAMLGELPP 339 (1293)
Q Consensus 313 G~~~~ivG~~GsGKSTLl~~l~g~~~~ 339 (1293)
|.+++|+||+||||||+.+.|...++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.02 E-value=0.0066 Score=34.32 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=11.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.++|+|.+|||||||+.-|+..+
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L 25 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAA 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99998099998999999999999
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.00 E-value=0.017 Score=31.11 Aligned_cols=22 Identities=45% Similarity=0.674 Sum_probs=11.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
++|++|++|+|||||++.|.|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999778
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.99 E-value=0.0026 Score=37.48 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=28.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 998899996999988999999952777886369999
Q 000774 935 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 970 (1293)
Q Consensus 935 ~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~ 970 (1293)
+|.+..++|+||+|||||+|.|.+......|.|.-.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~ 131 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEH 131 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCC
T ss_conf 356499987787348789875151767640355533
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.91 E-value=0.012 Score=32.21 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=18.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99889999699998899999995277
Q 000774 935 PSDKVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 935 ~Ge~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
.|+.+.|.||+||||||+.+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.82 E-value=0.082 Score=25.87 Aligned_cols=145 Identities=15% Similarity=0.168 Sum_probs=66.1
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCCCCEEECCCEEEECCCCCCCCCCHHHHHC-CCCCCCHHHHHHHHH
Q ss_conf 43994999993999848999999945989---99987325409189990776546724899872-599999889999999
Q 000774 310 IPVGSLVAIVGGTGEGKTSLISAMLGELP---PVSDASAVIRGTVAYVPQVSWIFNATVRDNIL-FGSAFEPARYEKAID 385 (1293)
Q Consensus 310 i~~G~~~~ivG~~GsGKSTLl~~l~g~~~---~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~-~g~~~~~~~~~~~~~ 385 (1293)
+.+|+.+.|.|++|+|||||+.-++-.+. +.-+......+.+-|+.-+... ..+.+.+. .+...+.........
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~--~~~~~Rl~~~~~~~~~~~~~~~~~ 103 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQAVAD 103 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHH--HHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 558958999928999899999999999976997211123578736898512349--999999999862368666531233
Q ss_pred HCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC-----CHHHHHHHHHHHHHH-HCC
Q ss_conf 80971477209999863026799877927999999999860399889980766671-----999999999998711-108
Q 000774 386 VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL-----DAHVGRQVFDRCIRG-ELS 459 (1293)
Q Consensus 386 ~~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAral~~~~~illlDEpts~L-----D~~~~~~i~~~l~~~-~~~ 459 (1293)
. ....+. .+.....-....+.-......+++++++|--.+.. |......+...+... ...
T Consensus 104 ~------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~ 169 (274)
T d1nlfa_ 104 G------LLIQPL--------IGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 169 (274)
T ss_dssp H------EEECCC--------TTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred C------CEECCC--------CCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 3------232145--------67420357899999988752676589628135422665232256899998877776447
Q ss_pred CCEEEEEECCC
Q ss_conf 96899980574
Q 000774 460 GKTRVLVTNQL 470 (1293)
Q Consensus 460 ~~t~i~vtH~~ 470 (1293)
+.+++++.|-.
T Consensus 170 ~~~vi~v~H~~ 180 (274)
T d1nlfa_ 170 GCSIVFLHHAS 180 (274)
T ss_dssp CCEEEEEEEC-
T ss_pred CCCEEHHHHCC
T ss_conf 97540131005
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.70 E-value=0.087 Score=25.66 Aligned_cols=28 Identities=32% Similarity=0.328 Sum_probs=18.3
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 4399499999399984899999994598
Q 000774 310 IPVGSLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 310 i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
++...-+.+.||+|+|||++.+.+++.+
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 9988757887899876304778878771
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.62 E-value=0.015 Score=31.45 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99499999399984899999994598
Q 000774 312 VGSLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 312 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.|.++.|.|++||||||+.+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=0.023 Score=30.08 Aligned_cols=42 Identities=14% Similarity=0.319 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCCEEEECCCCCCC
Q ss_conf 99999399984899999994598999987325409189990776546
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIF 361 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~~~~~i~~v~Q~~~l~ 361 (1293)
++||.|++||||||+.+.|...+....+ ...+..++++.+..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----~~~v~~Is~D~F~~ 123 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----HRRVELITTDGFLH 123 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----CCCEEEEEGGGGBC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----CCCEEEEEEEEEEC
T ss_conf 9999689999876899999999730468-----99659995215689
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.41 E-value=0.017 Score=31.21 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=20.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399499999399984899999994598
Q 000774 311 PVGSLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 311 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.+|.++.|+|.+||||||+.+.|+..+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.37 E-value=0.013 Score=32.05 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.37 E-value=0.1 Score=25.11 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=10.7
Q ss_pred EECCCCEEEEECCCCCCHHHHH
Q ss_conf 7439949999939998489999
Q 000774 309 DIPVGSLVAIVGGTGEGKTSLI 330 (1293)
Q Consensus 309 ~i~~G~~~~ivG~~GsGKSTLl 330 (1293)
.+++|+.+.|.|++|+|||+|+
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la 43 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFS 43 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHH
T ss_conf 9969839999947999999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.35 E-value=0.019 Score=30.73 Aligned_cols=25 Identities=40% Similarity=0.632 Sum_probs=14.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9499999399984899999994598
Q 000774 313 GSLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 313 G~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
|.+++|+||||+||+||.+.|.-..
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 8099999999999999999998639
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.26 E-value=0.011 Score=32.68 Aligned_cols=33 Identities=36% Similarity=0.678 Sum_probs=27.4
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 743994999993999848999999945989999
Q 000774 309 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 341 (1293)
Q Consensus 309 ~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~ 341 (1293)
-+..+.-+.+.|++||||||+++.|+++.++..
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 998378889994035662578999865301456
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.23 E-value=0.0063 Score=34.48 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=26.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9949999939998489999999459899998
Q 000774 312 VGSLVAIVGGTGEGKTSLISAMLGELPPVSD 342 (1293)
Q Consensus 312 ~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g 342 (1293)
+|...+++|+||+|||||+|.|.|......|
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~ 126 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTN 126 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHC
T ss_conf 3564999877873487898751517676403
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.15 E-value=0.018 Score=30.92 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=24.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 899996999988999999952777886369
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIVELERGRI 967 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~~p~~G~I 967 (1293)
+++|+|++|||||||++.|...+....-++
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v 33 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRP 33 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 899991899989999999999999779768
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.15 E-value=0.022 Score=30.29 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=20.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499889999699998899999995277
Q 000774 934 PPSDKVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 934 ~~Ge~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
|+|-.+.|.||.||||||+.+.|...+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.14 E-value=0.019 Score=30.70 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=24.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4998899996999988999999952777
Q 000774 934 PPSDKVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 934 ~~Ge~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
.+|-+|.|+|++||||||+.+.|...+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.05 E-value=0.026 Score=29.72 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999993999848999999945989
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
.++|+|++|+|||||+|.|.|.-.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 799989999978999999958886
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.018 Score=30.86 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 998899996999988999999952777
Q 000774 935 PSDKVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 935 ~Ge~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
+|..+.|+||||+|||||.+.|....+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.00 E-value=0.019 Score=30.79 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=9.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
++||.|++|||||||.+.|.-
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789887899999999999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.89 E-value=0.02 Score=30.55 Aligned_cols=23 Identities=30% Similarity=0.653 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.++|+|++|+|||||+|.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.88 E-value=0.024 Score=29.99 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=13.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9988999969999889999999527
Q 000774 935 PSDKVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 935 ~Ge~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
.+.++.|.|++||||||+.+.|...
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8718999899998989999999998
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.88 E-value=0.13 Score=24.43 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=13.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 399499999399984899999994
Q 000774 311 PVGSLVAIVGGTGEGKTSLISAML 334 (1293)
Q Consensus 311 ~~G~~~~ivG~~GsGKSTLl~~l~ 334 (1293)
++-+.+.++|.+||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 999899998999998999999999
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.87 E-value=0.025 Score=29.80 Aligned_cols=28 Identities=39% Similarity=0.601 Sum_probs=24.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3994999993999848999999945989
Q 000774 311 PVGSLVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 311 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
++|-.++|.|++||||||+.+.|+-.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.84 E-value=0.021 Score=30.37 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
+++|+|++|+|||||++.|+|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.024 Score=29.92 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999699998899999995277
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
+|||.|++||||||+.+.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999787999999999996
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.61 E-value=0.025 Score=29.81 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999969999889999999527778
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIVEL 962 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~~p 962 (1293)
+|||.|++||||||+.+.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.59 E-value=0.032 Score=28.96 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=13.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4998899996999988999999952
Q 000774 934 PPSDKVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 934 ~~Ge~~~ivG~~GsGKSTll~~l~g 958 (1293)
|+|-++.|+||.||||||..+.|.-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9963899989999988999999999
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.48 E-value=0.025 Score=29.90 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=11.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.+++.|++|||||||.+.|+..+
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998999999999984
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.46 E-value=0.032 Score=29.00 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=14.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
+++++|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918998399999999998
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.39 E-value=0.031 Score=29.17 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999699998899999995277
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
.++|+|++|+|||||+|.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.39 E-value=0.021 Score=30.43 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9889999699998899999995277
Q 000774 936 SDKVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 936 Ge~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
-.+|+|.|+.|+|||||.+.|...+
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3289998999998999999999984
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.39 E-value=0.034 Score=28.84 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=17.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98899996999988999999952777
Q 000774 936 SDKVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 936 Ge~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
...|.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.36 E-value=0.031 Score=29.13 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399499999399984899999994598
Q 000774 311 PVGSLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 311 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
..+.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.36 E-value=0.025 Score=29.82 Aligned_cols=29 Identities=17% Similarity=0.183 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 88999969999889999999527778863
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFRIVELERG 965 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g~~~p~~G 965 (1293)
.+++|.|+.||||||+.+.|...+.....
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~ 30 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGV 30 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 88999899998989999999999987699
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.35 E-value=0.045 Score=27.86 Aligned_cols=30 Identities=47% Similarity=0.642 Sum_probs=23.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 899996999988999999952777886369
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIVELERGRI 967 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~~p~~G~I 967 (1293)
.|+|+|++|+|||||+|.|.|.-.-..|.+
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~ 87 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEGAA 87 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 799989999978999999958886777567
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.31 E-value=0.018 Score=30.92 Aligned_cols=42 Identities=19% Similarity=0.134 Sum_probs=29.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCCEEEECCCCCC
Q ss_conf 9949999939998489999999459899998732540918999077654
Q 000774 312 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360 (1293)
Q Consensus 312 ~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~~~~~i~~v~Q~~~l 360 (1293)
+.-++||.|+.|+|||||++.+...+.. .| ..++++.=+|.-
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~-~g------~~vavlavDpss 94 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIR-EG------LKVAVIAVDPSS 94 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHH-TT------CCEEEEEECCC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH-CC------CCEEEECCCCCE
T ss_conf 8328974389999899999999999975-69------833220377761
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.26 E-value=0.16 Score=23.70 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=13.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 889999699998899999995277
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
..+-+.||.|+|||++++.+...+
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHC
T ss_conf 867866899888228999999982
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.22 E-value=0.03 Score=29.20 Aligned_cols=26 Identities=23% Similarity=0.625 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94999993999848999999945989
Q 000774 313 GSLVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 313 G~~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
..++.|.|++||||||+.+.|+..++
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=93.17 E-value=0.0014 Score=39.43 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=25.6
Q ss_pred CEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2000138964998899996999988999999952777
Q 000774 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 925 ~l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
.+++.++.+.+| .+.|+|+|||||||++.+|.-.+.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 870279974998-089988999987999999999966
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.12 E-value=0.019 Score=30.77 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99499999399984899999994598
Q 000774 312 VGSLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 312 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+|.++.++|.+||||||+.+.|+..+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.09 E-value=0.03 Score=29.21 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99996999988999999952
Q 000774 939 VGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 939 ~~ivG~~GsGKSTll~~l~g 958 (1293)
|+|+|++|+|||||++.|.|
T Consensus 3 I~lvG~~nvGKSsLin~l~~ 22 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTG 22 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999889999999968
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.08 E-value=0.021 Score=30.45 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=30.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCEEECCCCCCCCC
Q ss_conf 8999969999889999999527778863699999616898968885501687266654565
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG 998 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 998 (1293)
++||.|++||||||+.+.|...+.-..+. .++..+++|.+....
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----------------CCEEEEEEEEEECCC
T ss_conf 99996899998768999999997304689-----------------965999521568984
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.07 E-value=0.035 Score=28.69 Aligned_cols=45 Identities=24% Similarity=0.346 Sum_probs=31.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCCEEEECCCCCCC
Q ss_conf 99999399984899999994598999987325409189990776546
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIF 361 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~~~~~i~~v~Q~~~l~ 361 (1293)
++||.|++||||||+.+.|.-.+... + .......+.+++++.+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~-~-~~~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQN-E-VDYRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG-G-SCGGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHH-C-CCCCCCCEEEEECCCCCC
T ss_conf 99998999787999999999996410-1-345788439993465322
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.02 E-value=0.039 Score=28.36 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.++++|+.|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=92.84 E-value=0.0019 Score=38.40 Aligned_cols=36 Identities=22% Similarity=0.454 Sum_probs=29.5
Q ss_pred CEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4000027743994999993999848999999945989
Q 000774 302 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 302 ~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
.+++.++.+.+| +++|+|+|||||||++.+|.-.+.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 870279974998-089988999987999999999966
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=92.83 E-value=0.023 Score=30.06 Aligned_cols=20 Identities=40% Similarity=0.670 Sum_probs=10.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99996999988999999952
Q 000774 939 VGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 939 ~~ivG~~GsGKSTll~~l~g 958 (1293)
|||+|+.++|||||++.|+|
T Consensus 4 VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEE
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999879999999968
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.79 E-value=0.024 Score=29.94 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=26.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCC---CEEEECC
Q ss_conf 8899996999988999999952777886---3699999
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFRIVELER---GRILIDG 971 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g~~~p~~---G~I~i~g 971 (1293)
.+++|+|++|||||||++-|...+.... |.|..++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 09999809999899999999999986798379998316
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.60 E-value=0.049 Score=27.57 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=12.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 88999969999889999999527
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
.+|.|+||.||||||+.+.|.-.
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48999899999889999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.60 E-value=0.059 Score=26.97 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=24.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399499999399984899999994598
Q 000774 311 PVGSLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 311 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
++|-+++++|+.||||||..+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=92.60 E-value=0.047 Score=27.73 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+++++|.+|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.56 E-value=0.05 Score=27.55 Aligned_cols=25 Identities=40% Similarity=0.634 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9889999699998899999995277
Q 000774 936 SDKVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 936 Ge~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
+=++||+|+.|+|||||++.|+|.-
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.55 E-value=0.043 Score=27.99 Aligned_cols=21 Identities=43% Similarity=0.732 Sum_probs=12.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999969999889999999527
Q 000774 939 VGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 939 ~~ivG~~GsGKSTll~~l~g~ 959 (1293)
+.|+||+||||+||.+.|...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999989999999974
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=92.54 E-value=0.042 Score=28.12 Aligned_cols=24 Identities=54% Similarity=0.594 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 988999969999889999999527
Q 000774 936 SDKVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 936 Ge~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
|=+++++|+.|+|||||++.|+|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=92.50 E-value=0.047 Score=27.74 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 8899996999988999999952777886369999
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 970 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~ 970 (1293)
+.+.|.|++||||||+.+.|... ..|...++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~---~~~~~~~~ 33 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHH---CCCCEEEC
T ss_conf 79999899999999999999995---79979960
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.47 E-value=0.049 Score=27.60 Aligned_cols=22 Identities=41% Similarity=0.822 Sum_probs=13.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
.|+++|.+|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.44 E-value=0.055 Score=27.21 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 949999939998489999999459899
Q 000774 313 GSLVAIVGGTGEGKTSLISAMLGELPP 339 (1293)
Q Consensus 313 G~~~~ivG~~GsGKSTLl~~l~g~~~~ 339 (1293)
+.+++|.|++||||||+.+.|+..+..
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 988999899998989999999999987
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.44 E-value=0.071 Score=26.33 Aligned_cols=45 Identities=9% Similarity=0.095 Sum_probs=28.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
Q ss_conf 99889980766671999999999998711108968999805743042
Q 000774 428 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 474 (1293)
Q Consensus 428 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~~t~i~vtH~~~~l~ 474 (1293)
...++++||.-. |.......+.. .+.....+..+|++|++.+.+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~-~~e~~~~~~~~Il~tn~~~~i~ 175 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRR-TMEKYSKNIRLIMVCDSMSPII 175 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHH-HHHHSTTTEEEEEEESCSCSSC
T ss_pred CCEEEEECCCCC-CCCCCCHHHHC-CCCCCCCCCCCEEEECCCCCHH
T ss_conf 724999424333-45431112210-0221356643000102111002
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=92.43 E-value=0.037 Score=28.49 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=14.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999699998899999995277
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
.+.|.||.||||||+.+.|...+
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 89998999999899999999980
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=92.37 E-value=0.045 Score=27.90 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=15.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999699998899999995277
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
++.|+|+.||||||+.+.|.-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.36 E-value=0.049 Score=27.60 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999993999848999999945989
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
.++++|++|+|||||++.|.|.-.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~ 25 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKV 25 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999889999999968985
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.34 E-value=0.049 Score=27.61 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=15.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.++|+|++|+|||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=92.34 E-value=0.047 Score=27.76 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=11.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999399984899999994598
Q 000774 316 VAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 316 ~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+.|+|++||||||+.+.|+-.+
T Consensus 5 I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 5 IFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp EEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999999999999996
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.31 E-value=0.053 Score=27.30 Aligned_cols=22 Identities=14% Similarity=0.508 Sum_probs=11.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
.++|+||||+||+||++.|...
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 1999998999999999999970
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=92.28 E-value=0.029 Score=29.30 Aligned_cols=21 Identities=43% Similarity=0.620 Sum_probs=13.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999939998489999999459
Q 000774 316 VAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 316 ~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+||+|++++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=92.27 E-value=0.049 Score=27.58 Aligned_cols=23 Identities=17% Similarity=0.523 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999939998489999999459
Q 000774 314 SLVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 314 ~~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
..+.+.|++||||||+.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999999999999995
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=92.26 E-value=0.049 Score=27.62 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999993999848999999945989
Q 000774 314 SLVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 314 ~~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
..+.|.|++||||||+.+.|+..++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.20 E-value=0.027 Score=29.60 Aligned_cols=28 Identities=32% Similarity=0.332 Sum_probs=23.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999939998489999999459899998
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELPPVSD 342 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~~~~g 342 (1293)
.+.|+|++|+|||||++.++..+.....
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~ 30 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGV 30 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9999889997199999999999997799
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.20 E-value=0.057 Score=27.06 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999699998899999995277
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
+|+++|+.|+|||||++.|+|.-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.19 E-value=0.048 Score=27.69 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 889999699998899999995277
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
..+.|+||||+||+||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.14 E-value=0.055 Score=27.19 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.++++|+.|||||||++.|+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=92.02 E-value=0.049 Score=27.56 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.++|+|++||||||+.+.|+-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.00 E-value=0.043 Score=28.01 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3994999993999848999999945989
Q 000774 311 PVGSLVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 311 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
++.-+++++|++|+|||||++.+.+...
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7777899999999898999999967887
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.99 E-value=0.05 Score=27.49 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499889999699998899999995277
Q 000774 934 PPSDKVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 934 ~~Ge~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
++.-+++++|++|+|||||++.+.+-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.99 E-value=0.051 Score=27.47 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=16.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9889999699998899999995277
Q 000774 936 SDKVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 936 Ge~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
-.++.|+||.||||||+.+.|...+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=91.98 E-value=0.064 Score=26.68 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999699998899999995277
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
+|+++|++|+|||||++.++|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.94 E-value=0.23 Score=22.47 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=27.1
Q ss_pred CEEEEEE-EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 2000138-96499889999699998899999995277
Q 000774 925 VLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 925 ~l~~vsl-~i~~Ge~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
.|+.+-- -+++|..+-|.|++|+|||++..-+.-..
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7988456898698499999189999999999999999
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.92 E-value=0.043 Score=28.02 Aligned_cols=24 Identities=33% Similarity=0.732 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999993999848999999945989
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
-++|+||+||||+||++.|+...+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.027 Score=29.65 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9988999969999889999999527778
Q 000774 935 PSDKVGIVGRTGAGKSSMLNTLFRIVEL 962 (1293)
Q Consensus 935 ~Ge~~~ivG~~GsGKSTll~~l~g~~~p 962 (1293)
+|-+|.|+|++||||||+.+.|...+..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~ 45 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLVC 45 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9969998899999999999999999974
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.85 E-value=0.059 Score=26.95 Aligned_cols=21 Identities=48% Similarity=0.779 Sum_probs=11.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999969999889999999527
Q 000774 939 VGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 939 ~~ivG~~GsGKSTll~~l~g~ 959 (1293)
+.|+||+||||+|+.+.|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.83 E-value=0.061 Score=26.87 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+++++|++|+|||||++.+.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.81 E-value=0.033 Score=28.86 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=15.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3994999993999848999999945
Q 000774 311 PVGSLVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 311 ~~G~~~~ivG~~GsGKSTLl~~l~g 335 (1293)
++|.++.+.|.+||||||+.+.|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9986999989999998999999998
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.80 E-value=0.063 Score=26.77 Aligned_cols=27 Identities=22% Similarity=0.522 Sum_probs=23.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399499999399984899999994598
Q 000774 311 PVGSLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 311 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.+..+++|+|+.||||||+.+.|+-.+
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899489998999998899999999997
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=91.69 E-value=0.06 Score=26.89 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999699998899999995277
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
.+.|+||+||||||+.+.|.-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.58 E-value=0.063 Score=26.76 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
+++|+|+.|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.52 E-value=0.1 Score=25.15 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999939998489999999459899
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELPP 339 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~~ 339 (1293)
+++++|+.|+|||||++.+.+....
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~~ 28 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDVD 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCCS
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCC
T ss_conf 9999999998999999998089987
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.48 E-value=0.25 Score=22.11 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=9.7
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999969999889999999
Q 000774 939 VGIVGRTGAGKSSMLNTL 956 (1293)
Q Consensus 939 ~~ivG~~GsGKSTll~~l 956 (1293)
+||+|+.|||||||+..|
T Consensus 9 i~i~gh~~~GKTtL~e~l 26 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERI 26 (276)
T ss_dssp EEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHH
T ss_conf 999958989989999999
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.47 E-value=0.059 Score=26.94 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99996999988999999952777
Q 000774 939 VGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 939 ~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
+-+.||.|+||||+.+.|.+.+.
T Consensus 35 ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 35 FLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99889799889999999999865
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.46 E-value=0.066 Score=26.61 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=11.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 998899996999988999999952
Q 000774 935 PSDKVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 935 ~Ge~~~ivG~~GsGKSTll~~l~g 958 (1293)
.+.++.|+||.||||||+.+.|..
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 782899989999987999999999
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.45 E-value=0.074 Score=26.20 Aligned_cols=22 Identities=45% Similarity=0.711 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
.|+++|.+|+|||||++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=91.41 E-value=0.041 Score=28.16 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
-|||+|++++|||||++.|.|.-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69998999987999999996899
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.39 E-value=0.21 Score=22.64 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=13.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
+++++|..|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=91.32 E-value=0.074 Score=26.20 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999993999848999999945989
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
+++++|.+|+|||||++.+.+...
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999899999999967987
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.29 E-value=0.071 Score=26.33 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999993999848999999945989
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
.++|+||+||||+|+.+.|+...+
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999999999999999997488
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.26 E-value=0.071 Score=26.37 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++||.|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=91.10 E-value=0.052 Score=27.38 Aligned_cols=21 Identities=52% Similarity=0.789 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999969999889999999527
Q 000774 939 VGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 939 ~~ivG~~GsGKSTll~~l~g~ 959 (1293)
|||+|+.++|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.10 E-value=0.05 Score=27.54 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=14.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9499999399984899999994598
Q 000774 313 GSLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 313 G~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+.+++|-|+.||||||+++.|...+
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9889998788877999999999997
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.09 E-value=0.094 Score=25.41 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=30.7
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
Q ss_conf 649988999969999889999999527778--863699999616
Q 000774 933 IPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDI 974 (1293)
Q Consensus 933 i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p--~~G~I~i~g~~i 974 (1293)
=.+|-++-+.|.+||||||+.+.|...+.. ..-.+.+||..+
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 89986999989999998999999998877742750899753678
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.08 E-value=0.086 Score=25.71 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+++++|.+||||||+.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999999999999999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.08 E-value=0.081 Score=25.91 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+++++|++|+|||||++.+.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.06 E-value=0.084 Score=25.79 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=26.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99889999699998899999995277788636999
Q 000774 935 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 969 (1293)
Q Consensus 935 ~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i 969 (1293)
+.-++||.|+.|||||||++.+.+.+....-+|-+
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vav 87 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 87 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 83289743899998999999999999756983322
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=91.03 E-value=0.037 Score=28.57 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=17.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9499999399984899999994598
Q 000774 313 GSLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 313 G~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.-+++++|++++|||||++.|.|.-
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.02 E-value=0.1 Score=25.22 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=17.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4998899996999988999999952777
Q 000774 934 PPSDKVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 934 ~~Ge~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
++|-.|+|-|+-||||||+++.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.12 Score=24.67 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=13.3
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 743994999993999848999999945
Q 000774 309 DIPVGSLVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 309 ~i~~G~~~~ivG~~GsGKSTLl~~l~g 335 (1293)
.+++|+.+.|.|++|+|||||+.-++.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 985997999995899999999999999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.90 E-value=0.11 Score=24.77 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=24.9
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 96499889999699998899999995277
Q 000774 932 TIPPSDKVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 932 ~i~~Ge~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
-+++|+.+-|.||+|+||||+..-++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=90.85 E-value=0.088 Score=25.62 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99993999848999999945
Q 000774 316 VAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 316 ~~ivG~~GsGKSTLl~~l~g 335 (1293)
++++|+..+|||||++.|.|
T Consensus 8 IaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99990778709999999997
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.84 E-value=0.083 Score=25.83 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=23.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399499999399984899999994598
Q 000774 311 PVGSLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 311 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
++-.+++|+|+.||||||+.+.|+..+
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997289998999999899999999985
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.84 E-value=0.082 Score=25.86 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999699998899999995277
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
+++++|++|+|||||++.+.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.83 E-value=0.091 Score=25.50 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=9.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999939998489999999459
Q 000774 316 VAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 316 ~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+.|+|+.||||||+.+.|+-.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999889999989999999998
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=90.83 E-value=0.082 Score=25.85 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++.++|+.|+|||||++.+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=90.80 E-value=0.14 Score=24.12 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899996999988999999952777
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
++.++|+.|+|||||++.+.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=90.79 E-value=0.083 Score=25.81 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
+++|+|+.|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.79 E-value=0.088 Score=25.64 Aligned_cols=21 Identities=24% Similarity=0.608 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
++||.|..||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.75 E-value=0.088 Score=25.61 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=21.7
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 64998899996999988999999952
Q 000774 933 IPPSDKVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 933 i~~Ge~~~ivG~~GsGKSTll~~l~g 958 (1293)
-++.+.+-++|+.||||||+.+-+..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 99998999989999989999999997
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.74 E-value=0.29 Score=21.61 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=31.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
Q ss_conf 998899838888999998999999999882894799970593101
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 1107 (1293)
Q Consensus 1063 ~p~iliLDEpts~lD~~t~~~i~~~l~~~~~~~tvi~vsH~~~~~ 1107 (1293)
+.+++++||.- .+.......+...|........++++++....+
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CEEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHH
T ss_conf 71899996632-000237899998863112002320126708775
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=90.70 E-value=0.078 Score=26.02 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=11.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99996999988999999952
Q 000774 939 VGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 939 ~~ivG~~GsGKSTll~~l~g 958 (1293)
+-++|+.||||||+.+.|..
T Consensus 5 Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 89988999988999999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.68 E-value=0.057 Score=27.07 Aligned_cols=27 Identities=37% Similarity=0.550 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 998899996999988999999952777
Q 000774 935 PSDKVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 935 ~Ge~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
++..|+|-|+-||||||++++|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=90.59 E-value=0.095 Score=25.37 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=12.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89999699998899999995
Q 000774 938 KVGIVGRTGAGKSSMLNTLF 957 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~ 957 (1293)
++||.|..||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.55 E-value=0.077 Score=26.06 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+++|-|..||||||+++.|...+
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99988999988899999999870
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=90.51 E-value=0.075 Score=26.16 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=12.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999699998899999995277
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
++.|.||.||||||+.+.|.--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=90.46 E-value=0.1 Score=25.20 Aligned_cols=20 Identities=35% Similarity=0.745 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999399984899999994
Q 000774 315 LVAIVGGTGEGKTSLISAML 334 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~ 334 (1293)
++||.|..||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.37 E-value=0.31 Score=21.38 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.++++|...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=90.35 E-value=0.11 Score=24.97 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=13.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999699998899999995277
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
++.|+||.||||||+.+.|.--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.33 E-value=0.11 Score=24.88 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=13.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++.|+||.||||||..+.|.--
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.31 E-value=0.11 Score=24.84 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=13.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+++|-||+||||||..+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=90.30 E-value=0.1 Score=25.21 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999699998899999995277
Q 000774 939 VGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 939 ~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
+.|+|+.||||||+.+.|...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.22 E-value=0.13 Score=24.31 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3994999993999848999999945989
Q 000774 311 PVGSLVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 311 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
++|-++++-|+.||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.21 E-value=0.11 Score=24.78 Aligned_cols=111 Identities=16% Similarity=0.111 Sum_probs=55.0
Q ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 27743994999993999848999999945989999873254091899907765467248998725999998899999998
Q 000774 307 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 386 (1293)
Q Consensus 307 ~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 386 (1293)
++.-.+...++++|++|+||||.+--|+-.+. ..| ..|+.+.=+.+- ....++...+
T Consensus 5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~------~kV~lit~Dt~R----------------~gA~eQL~~~ 61 (213)
T d1vmaa2 5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEG------KSVVLAAADTFR----------------AAAIEQLKIW 61 (213)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTT------CCEEEEEECTTC----------------HHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------CCEEEEEECCCC----------------CCHHHHHHHH
T ss_conf 67999998999989999988999999999999-779------906999601334----------------2046788877
Q ss_pred CCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCCCHHHHHHHH
Q ss_conf 0971477209999863026799877927999999999860399889980766-671999999999
Q 000774 387 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL-SALDAHVGRQVF 450 (1293)
Q Consensus 387 ~~l~~~~~~l~~~~~~~i~~~g~~LSGGQkqRi~lAral~~~~~illlDEpt-s~LD~~~~~~i~ 450 (1293)
+.. +. .| -.....+..+ -.-.+-..+.+...+.|++|.|=|= ++-|......+.
T Consensus 62 a~~---l~-i~----~~~~~~~~d~--~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~ 116 (213)
T d1vmaa2 62 GER---VG-AT----VISHSEGADP--AAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELR 116 (213)
T ss_dssp HHH---HT-CE----EECCSTTCCH--HHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHH
T ss_pred HHH---CC-CC----CCCCCCCCCH--HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 643---27-64----1036777768--99878878999876999899824553301688889988
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.16 E-value=0.13 Score=24.26 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=12.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9949999939998489999999459
Q 000774 312 VGSLVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 312 ~G~~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+|..+++-|..||||||+++.|...
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9878999899888799999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.08 E-value=0.09 Score=25.54 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9889999699998899999995277
Q 000774 936 SDKVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 936 Ge~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
.-.|+|-|+.||||||+++.|...+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6199988999988899999999870
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.07 E-value=0.16 Score=23.54 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=15.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 998899996999988999999952777
Q 000774 935 PSDKVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 935 ~Ge~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
+|..|++-|+-||||||++++|.-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=90.02 E-value=0.058 Score=27.01 Aligned_cols=25 Identities=48% Similarity=0.543 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9889999699998899999995277
Q 000774 936 SDKVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 936 Ge~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
.-+|+|+|++++|||||++.|++.-
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.00 E-value=0.14 Score=24.19 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9988999969999889999999527778
Q 000774 935 PSDKVGIVGRTGAGKSSMLNTLFRIVEL 962 (1293)
Q Consensus 935 ~Ge~~~ivG~~GsGKSTll~~l~g~~~p 962 (1293)
+|..|.|-|+-||||||+++.|...+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.98 E-value=0.11 Score=24.93 Aligned_cols=25 Identities=40% Similarity=0.504 Sum_probs=22.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999993999848999999945989
Q 000774 314 SLVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 314 ~~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
.-+.+.||+||||||+.+.|++++.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=89.84 E-value=0.12 Score=24.67 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999399984899999994598
Q 000774 316 VAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 316 ~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.84 E-value=0.11 Score=25.02 Aligned_cols=28 Identities=21% Similarity=0.513 Sum_probs=25.0
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 4399499999399984899999994598
Q 000774 310 IPVGSLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 310 i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+.++.++.|+|+.||||||+.+.|+..+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=89.80 E-value=0.13 Score=24.43 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=20.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399499999399984899999994598
Q 000774 311 PVGSLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 311 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
++.=+++++|..|+|||||++.+.+..
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 985799999999989899999996688
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.78 E-value=0.13 Score=24.35 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.|+++|+.|+|||||++.+.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=89.76 E-value=0.15 Score=23.87 Aligned_cols=42 Identities=26% Similarity=0.375 Sum_probs=29.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCCEEEECCCCC
Q ss_conf 3994999993999848999999945989999873254091899907765
Q 000774 311 PVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW 359 (1293)
Q Consensus 311 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~~~~~i~~v~Q~~~ 359 (1293)
+++..++++|++|+||||.+--|+..+. ..| .+++.+.=+.+
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g------~kV~lit~Dt~ 45 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLG------KKVMFCAGDTF 45 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH-TTT------CCEEEECCCCS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------CCEEEEEECCC
T ss_conf 9977999989999988999999999999-779------90799981366
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=89.72 E-value=0.12 Score=24.65 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999699998899999995277
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
.+||+|+..||||||++.|++.-
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=89.63 E-value=0.1 Score=25.16 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+++|.|+.||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.62 E-value=0.14 Score=24.07 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+++|+|+.||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.61 E-value=0.14 Score=24.10 Aligned_cols=41 Identities=27% Similarity=0.235 Sum_probs=26.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCCEEEECCCCC
Q ss_conf 994999993999848999999945989999873254091899907765
Q 000774 312 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW 359 (1293)
Q Consensus 312 ~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~~~~~i~~v~Q~~~ 359 (1293)
+.-+++|.|+.|+|||||+..+...+.. .| .+++++.=+|.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~-~g------~~vaViavDps 90 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTA-AG------HKVAVLAVDPS 90 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHH-TT------CCEEEEEECGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH-CC------CCEEEEECCCC
T ss_conf 8159861179988899999999998763-68------75134434655
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=89.55 E-value=0.1 Score=25.09 Aligned_cols=28 Identities=29% Similarity=0.251 Sum_probs=14.8
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7743994999993999848999999945
Q 000774 308 LDIPVGSLVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 308 l~i~~G~~~~ivG~~GsGKSTLl~~l~g 335 (1293)
+.+.+|++.+|.|+.|+|||||+..++.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5645787556867999887899999999
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=89.47 E-value=0.14 Score=24.11 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8899996999988999999952777
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
=+++|-||.||||||..+.|.--+.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 5999789998798999999999969
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.42 E-value=0.13 Score=24.43 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=11.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999699998899999995277
Q 000774 939 VGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 939 ~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
+.++|+.||||||+.+.|...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.41 E-value=0.16 Score=23.62 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=25.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39949999939998489999999459899
Q 000774 311 PVGSLVAIVGGTGEGKTSLISAMLGELPP 339 (1293)
Q Consensus 311 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~ 339 (1293)
.+|..+++-|..||||||+.++|.-.+..
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 97689999899888699999999999971
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=89.40 E-value=0.13 Score=24.33 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499999399984899999994598
Q 000774 314 SLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 314 ~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+.+.++|++||||||+.+.|+-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=89.38 E-value=0.14 Score=24.13 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=29.6
Q ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 013896499889999699998899999995277788
Q 000774 928 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 963 (1293)
Q Consensus 928 ~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~ 963 (1293)
|.=+.+.+|++.+|+|+.|+|||||+..+......+
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~~ 70 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 70 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 412564578755686799988789999999977515
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.36 E-value=0.14 Score=24.05 Aligned_cols=25 Identities=24% Similarity=0.390 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999969999889999999527778
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIVEL 962 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~~p 962 (1293)
.+.++|+.||||||+.+.|...+.-
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~~ 28 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLNF 28 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999899999999999999999974
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.29 E-value=0.14 Score=24.00 Aligned_cols=19 Identities=37% Similarity=0.660 Sum_probs=10.8
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 8999969999889999999
Q 000774 938 KVGIVGRTGAGKSSMLNTL 956 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l 956 (1293)
++||+|..||||||..+.+
T Consensus 5 iIgitG~igSGKStv~~~l 23 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAF 23 (208)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9997898868899999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.27 E-value=0.14 Score=24.05 Aligned_cols=22 Identities=32% Similarity=0.687 Sum_probs=12.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
++||+|+..+|||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.26 E-value=0.14 Score=24.06 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=14.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++.++||.||||||..+.|.--
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=89.24 E-value=0.14 Score=24.08 Aligned_cols=26 Identities=35% Similarity=0.368 Sum_probs=21.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49988999969999889999999527
Q 000774 934 PPSDKVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 934 ~~Ge~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++.=++.++|..|+|||||++.+.+.
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=89.24 E-value=0.14 Score=24.03 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=10.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
++.+.|.+||||||+.+.|+..+
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998989989899999999999
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.19 E-value=0.15 Score=23.80 Aligned_cols=35 Identities=20% Similarity=0.429 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9988999969999889999999527778863699999
Q 000774 935 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 971 (1293)
Q Consensus 935 ~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g 971 (1293)
|+.-+.++||+|+|||.|.+.|...+. .--+.+++
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~ 82 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEA 82 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC--CCHHCCCC
T ss_conf 986699989999888899999862132--21000344
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.17 E-value=0.15 Score=23.74 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999699998899999995277
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
++.|+||.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=89.13 E-value=0.16 Score=23.73 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=15.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 889999699998899999995277
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
=++.|+||-||||||+.+.|.--+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 169998899998799999999997
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.13 E-value=0.15 Score=23.79 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=23.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCCEEEECCCCCC
Q ss_conf 9999939998489999999459899998732540918999077654
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~~~~~i~~v~Q~~~l 360 (1293)
++||-|+.|||||||...|.-.+....+ ....+..++.+.+-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~----~~~~v~~iS~DdfY 70 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYG----GEKSIGYASIDDFY 70 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHG----GGSCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHC----CCCCEEEECCCCCC
T ss_conf 9983799878899999999999998727----78606763567777
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.05 E-value=0.16 Score=23.66 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=14.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999699998899999995277
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
++.|.||.||||||+.+.|.--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.97 E-value=0.16 Score=23.54 Aligned_cols=24 Identities=25% Similarity=0.518 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999993999848999999945989
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
.++++|...+|||||+++|+|.--
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 599981898979999999968997
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=88.91 E-value=0.17 Score=23.43 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+++|.||.||||||..+.|+..+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.89 E-value=0.062 Score=26.82 Aligned_cols=40 Identities=8% Similarity=0.202 Sum_probs=30.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCCEEEECCCCCC
Q ss_conf 49999939998489999999459899998732540918999077654
Q 000774 314 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360 (1293)
Q Consensus 314 ~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~~~~~i~~v~Q~~~l 360 (1293)
-++||.|++||||||+.+.+...+... | -.+..++|+++-
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~-~------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRRE-G------VKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH-T------CCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-C------CCEEEEECCCCC
T ss_conf 899998999780999999999997156-9------976999477787
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=88.88 E-value=0.16 Score=23.61 Aligned_cols=21 Identities=38% Similarity=0.768 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
++||+|..||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=88.83 E-value=0.17 Score=23.47 Aligned_cols=30 Identities=30% Similarity=0.530 Sum_probs=23.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC---CCCCCEE
Q ss_conf 89999699998899999995277---7886369
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIV---ELERGRI 967 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~---~p~~G~I 967 (1293)
+|+|.||.||||||..+.|..-+ ..+.|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
T ss_conf 899779998898999999999969908988899
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.80 E-value=0.22 Score=22.54 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|..|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.78 E-value=0.32 Score=21.34 Aligned_cols=21 Identities=33% Similarity=0.639 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
+++++|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.77 E-value=0.17 Score=23.41 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999699998899999995277
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
++||.|+.|||||||...|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=88.75 E-value=0.096 Score=25.35 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999969999889999999527778
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIVEL 962 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~~p 962 (1293)
++.|.|+.||||||+.+.|...+.-
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999898998989999999999987
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=88.71 E-value=0.17 Score=23.36 Aligned_cols=36 Identities=28% Similarity=0.476 Sum_probs=25.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC---CCCCEEEEC
Q ss_conf 998899996999988999999952777---886369999
Q 000774 935 PSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILID 970 (1293)
Q Consensus 935 ~Ge~~~ivG~~GsGKSTll~~l~g~~~---p~~G~I~i~ 970 (1293)
+.-++||.|+-|||||||+..+...+. ..-|-|.+|
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 815986117998889999999999876368751344346
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=88.69 E-value=0.17 Score=23.44 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=24.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 4998899996999988999999952777886369999
Q 000774 934 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 970 (1293)
Q Consensus 934 ~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~ 970 (1293)
++..++.++||+|+||||.+-=|...+.-..-+|.+-
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~li 43 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 43 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9997999989999998999999999999779947998
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=88.68 E-value=0.18 Score=23.32 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
++.|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.68 E-value=0.15 Score=23.77 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++||+|+..+|||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=88.67 E-value=0.34 Score=21.14 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=15.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 88999969999889999999527778
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFRIVEL 962 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g~~~p 962 (1293)
..+.|.||.|+||||+++.+...+..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 81688898999899999999999754
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.67 E-value=0.22 Score=22.53 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++.++|+.|+|||||++.+.+-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.65 E-value=0.19 Score=22.99 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=18.2
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 743994999993999848999999945
Q 000774 309 DIPVGSLVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 309 ~i~~G~~~~ivG~~GsGKSTLl~~l~g 335 (1293)
.+++|+.+.|.|++|+||||+..-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.38 E-value=0.19 Score=23.10 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999699998899999995277
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
++.++||-||||||+.+.|.-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.34 E-value=0.43 Score=20.32 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=23.9
Q ss_pred HHCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 60399889980766671-999999999998711108968999805
Q 000774 425 VYSNSDVFIFDDPLSAL-DAHVGRQVFDRCIRGELSGKTRVLVTN 468 (1293)
Q Consensus 425 l~~~~~illlDEpts~L-D~~~~~~i~~~l~~~~~~~~t~i~vtH 468 (1293)
.+.+.+++++||.-.-. ++.....++..+......++.+|+.+.
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~ 138 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 138 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 876213010112655058657788999999987631663899548
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.32 E-value=0.38 Score=20.76 Aligned_cols=22 Identities=45% Similarity=0.736 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++||||---+|||||++.|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 4888899999889999999779
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.25 E-value=0.21 Score=22.79 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=12.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499889999699998899999995277
Q 000774 934 PPSDKVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 934 ~~Ge~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
+||.++.+.|+=||||||+.+.+..-+
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 998299996687765889999987642
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.24 E-value=0.034 Score=28.81 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|++++|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.23 E-value=0.17 Score=23.33 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899996999988999999952777
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
.+-+.||+|+||||++++++..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.23 E-value=0.15 Score=23.83 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.+.++|..||||||+.+.|+..+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 48998899998899999999984
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.10 E-value=0.24 Score=22.24 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.03 E-value=0.22 Score=22.57 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=24.0
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 964998899996999988999999952
Q 000774 932 TIPPSDKVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 932 ~i~~Ge~~~ivG~~GsGKSTll~~l~g 958 (1293)
-+++|+.+-|.|+.|+||||+..-+.-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=88.02 E-value=0.19 Score=23.02 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|+.|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.97 E-value=0.19 Score=22.98 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|..|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=87.95 E-value=0.36 Score=20.95 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=14.4
Q ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 0001389649988999969999889999999
Q 000774 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL 956 (1293)
Q Consensus 926 l~~vsl~i~~Ge~~~ivG~~GsGKSTll~~l 956 (1293)
++...+.+ .|.-+.|.|++|+||||+...+
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l 35 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDL 35 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEECCCCCCHHHHHHHH
T ss_conf 78999999-9999999818999989999999
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.94 E-value=0.45 Score=20.15 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|..|+|||||++-+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.94 E-value=0.25 Score=22.10 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+++++|.+|+|||||++.+.+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999979989999999998098
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.91 E-value=0.26 Score=22.04 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=15.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|..|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.84 E-value=0.23 Score=22.41 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999993999848999999945989
Q 000774 314 SLVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 314 ~~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
..+.+.||+|+||||++++++..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4499987999988899999999987
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.83 E-value=0.19 Score=22.98 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 88999969999889999999527
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
..|+|+|+.|+|||||++.+.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.79 E-value=0.25 Score=22.16 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++.++|..|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.71 E-value=0.23 Score=22.37 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHH-HCCCCCCCC
Q ss_conf 49999939998489999999-459899998
Q 000774 314 SLVAIVGGTGEGKTSLISAM-LGELPPVSD 342 (1293)
Q Consensus 314 ~~~~ivG~~GsGKSTLl~~l-~g~~~~~~g 342 (1293)
-++.++|.+|+|||||++-+ .+...|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 779999899998899999895098278888
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.69 E-value=0.2 Score=22.89 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
++.++|+.||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=87.68 E-value=0.18 Score=23.21 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=18.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999939998489999999459
Q 000774 314 SLVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 314 ~~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
=+++++|+.|+|||||++.+.+.
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79999999998999999999648
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.66 E-value=0.24 Score=22.31 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=10.9
Q ss_pred ECCCCEEEEECCCCCCHHHHHHH
Q ss_conf 43994999993999848999999
Q 000774 310 IPVGSLVAIVGGTGEGKTSLISA 332 (1293)
Q Consensus 310 i~~G~~~~ivG~~GsGKSTLl~~ 332 (1293)
+++|+.+.|.|++|+||||+..-
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq 55 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHT 55 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
T ss_conf 55887999985898988999999
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=87.60 E-value=0.16 Score=23.57 Aligned_cols=29 Identities=38% Similarity=0.431 Sum_probs=23.6
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 43994999993999848999999945989
Q 000774 310 IPVGSLVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 310 i~~G~~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
+....-+.+.||+|+|||++.+.++.++.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 99888678668998882289999999829
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.55 E-value=0.27 Score=21.89 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++.++|+.|+|||||++.+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=87.50 E-value=0.25 Score=22.19 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 998899996999988999999952777
Q 000774 935 PSDKVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 935 ~Ge~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
...++.++||+|+||||.+-=|...+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 986899989999988999999999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.48 E-value=0.3 Score=21.54 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
+++++|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=87.44 E-value=0.089 Score=25.60 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 88999969999889999999527778
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFRIVEL 962 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g~~~p 962 (1293)
=++||.|++||||||+.+.+...+..
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~ 30 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRR 30 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 89999899978099999999999715
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=87.39 E-value=0.24 Score=22.29 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=27.0
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 7439949999939998489999999459899
Q 000774 309 DIPVGSLVAIVGGTGEGKTSLISAMLGELPP 339 (1293)
Q Consensus 309 ~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~ 339 (1293)
..++|.+++|.|+-||||||+.+.++..+..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.38 E-value=0.25 Score=22.15 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.34 E-value=0.27 Score=21.90 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=14.6
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 74399499999399984899999994
Q 000774 309 DIPVGSLVAIVGGTGEGKTSLISAML 334 (1293)
Q Consensus 309 ~i~~G~~~~ivG~~GsGKSTLl~~l~ 334 (1293)
.+++|+.+.|.|++|+|||++..-++
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 97689799998899887889999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=87.34 E-value=0.21 Score=22.72 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 88999969999889999999527
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
=++.++|+.|+|||||++.+.+-
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79999999998999999999648
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.13 E-value=0.44 Score=20.25 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
+++++|.+|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=87.11 E-value=0.21 Score=22.70 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999993999848999999945989
Q 000774 314 SLVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 314 ~~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
.-+.++||+|+|||.|.+.++..+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 6699989999888899999862132
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.08 E-value=0.29 Score=21.63 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+++++|.+|+|||||++.+.+.-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999967899999998688
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=87.07 E-value=0.31 Score=21.41 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|+.|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.05 E-value=0.23 Score=22.47 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=16.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
+++++|..|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.01 E-value=0.26 Score=21.99 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=87.01 E-value=0.21 Score=22.78 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999993999848999999945989
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
=+.++||+|||||-|.+.|++.+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 479989999889999999998738
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.91 E-value=0.33 Score=21.21 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.89 E-value=0.25 Score=22.13 Aligned_cols=21 Identities=43% Similarity=0.725 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.89 E-value=0.27 Score=21.86 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++.++|+.|+|||||++.+.+-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.88 E-value=0.33 Score=21.21 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC-CC
Q ss_conf 899996999988999999952777-88
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIVE-LE 963 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~~-p~ 963 (1293)
.++++|.-.||||||++.|+|.-- |.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCC
T ss_conf 599981898979999999968997887
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=86.87 E-value=0.43 Score=20.32 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=26.9
Q ss_pred CCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 94000027743994999993999848999999945
Q 000774 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 301 ~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g 335 (1293)
..++..-+.+ .|.-+.+.|++|+||||+...+..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.86 E-value=0.3 Score=21.47 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=29.3
Q ss_pred CEEEEEE-EECCCCEEEEECCCCCCHHHHHH-HHHCCCCCCCCEEEE
Q ss_conf 2000138-96499889999699998899999-995277788636999
Q 000774 925 VLHGLSF-TIPPSDKVGIVGRTGAGKSSMLN-TLFRIVELERGRILI 969 (1293)
Q Consensus 925 ~l~~vsl-~i~~Ge~~~ivG~~GsGKSTll~-~l~g~~~p~~G~I~i 969 (1293)
-|+++-- .+++|+.+-|.|++|+|||++.. ++..........+.+
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~ 60 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 60 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 79885568996983999994799999999999999999856887420
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.81 E-value=0.24 Score=22.31 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=28.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
Q ss_conf 998899838888999998999999999882894799970593101
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 1107 (1293)
Q Consensus 1063 ~p~iliLDEpts~lD~~t~~~i~~~l~~~~~~~tvi~vsH~~~~~ 1107 (1293)
++.++++||.- .+.......+...+......+..|++++..+.+
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i 152 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 152 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CCEEEEEHHHH-HCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHC
T ss_conf 72288614344-312147898764112477644788614876656
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=86.77 E-value=0.29 Score=21.61 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=12.9
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 4399499999399984899999994
Q 000774 310 IPVGSLVAIVGGTGEGKTSLISAML 334 (1293)
Q Consensus 310 i~~G~~~~ivG~~GsGKSTLl~~l~ 334 (1293)
+++|+.+.|.|++|+|||++..-++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 6288599999179999899999999
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.76 E-value=0.25 Score=22.08 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=13.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
.+||+|...+|||||+++|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.66 E-value=0.28 Score=21.73 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
+++++|..|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.65 E-value=0.32 Score=21.27 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=15.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
+++++|..|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899298999999971
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.58 E-value=0.16 Score=23.52 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=25.3
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 964998899996999988999999952777
Q 000774 932 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 932 ~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
.+++..-+-+.||.|+|||++++.+.+.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.57 E-value=0.26 Score=22.00 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=20.9
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 77439949999939998489999999459
Q 000774 308 LDIPVGSLVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 308 l~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+.+-+|++++|.|+.|+|||+|+.-++..
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 56367887776679998989999999998
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.56 E-value=0.42 Score=20.41 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999993999848999999945989
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
+++++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.54 E-value=0.22 Score=22.50 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499999399984899999994598
Q 000774 314 SLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 314 ~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
..|+++|+.++|||||++.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999988999997999999980998
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.52 E-value=0.055 Score=27.22 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
+++++|+.++|||||++.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.49 E-value=0.3 Score=21.48 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=18.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99499999399984899999994598
Q 000774 312 VGSLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 312 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.+..+.|.|+.|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.48 E-value=0.36 Score=20.94 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+++++|..|+|||||++-+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.45 E-value=0.34 Score=21.14 Aligned_cols=28 Identities=39% Similarity=0.571 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 8999969999889999999527778863
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIVELERG 965 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~~p~~G 965 (1293)
.++++|.-.||||||++.|+|.--...|
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~~lP~~ 55 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRDFLPRG 55 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCCSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 6999768989799999999689868878
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.40 E-value=0.31 Score=21.37 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++.++|..|+|||||++.+.+-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.38 E-value=0.3 Score=21.47 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=24.2
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 964998899996999988999999952
Q 000774 932 TIPPSDKVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 932 ~i~~Ge~~~ivG~~GsGKSTll~~l~g 958 (1293)
-+++|..+-|.|++|+|||++...+..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.36 E-value=0.38 Score=20.71 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999969999889999999527778
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIVEL 962 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~~p 962 (1293)
++.++|..|+|||||++.+.+...+
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999998992999999999728677
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.36 E-value=0.55 Score=19.52 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|..|+|||+|++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.32 E-value=0.28 Score=21.71 Aligned_cols=23 Identities=39% Similarity=0.707 Sum_probs=12.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.31 E-value=0.35 Score=21.01 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.29 E-value=0.34 Score=21.08 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8899996999988999999952
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g 958 (1293)
-++.++|..|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899999899298999999971
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.29 E-value=0.29 Score=21.61 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=11.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999399984899999994
Q 000774 315 LVAIVGGTGEGKTSLISAML 334 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~ 334 (1293)
++||.|+.||||||..+.|.
T Consensus 3 iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99997999988999999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=86.27 E-value=0.3 Score=21.50 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99499999399984899999994598
Q 000774 312 VGSLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 312 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+.=+++|+|+.||||||+.+.|+-.+
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 62169998899998799999999997
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.24 E-value=0.31 Score=21.41 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+++++|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.23 E-value=0.32 Score=21.30 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=22.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499889999699998899999995277
Q 000774 934 PPSDKVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 934 ~~Ge~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
..+..+.|.||.|+|||||++.+....
T Consensus 27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 27 LRAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp TCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 059879998699982999999999977
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.09 E-value=0.3 Score=21.49 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999699998899999995277
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
++||+|..-+|||||++.|+|.-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=86.02 E-value=0.34 Score=21.13 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999399984899999994598
Q 000774 316 VAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 316 ~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+|++|...+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.00 E-value=0.38 Score=20.73 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|..|+|||||++-+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=85.94 E-value=0.57 Score=19.37 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=14.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
+++++|..|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.91 E-value=0.35 Score=21.02 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899996999988999999952777
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
++.++|..|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=85.87 E-value=0.3 Score=21.55 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9999699998899999995277788
Q 000774 939 VGIVGRTGAGKSSMLNTLFRIVELE 963 (1293)
Q Consensus 939 ~~ivG~~GsGKSTll~~l~g~~~p~ 963 (1293)
+-+.||.|+||||+.+++...+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 8987999973889999998503888
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=85.73 E-value=0.39 Score=20.67 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899996999988999999952777
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
.+|++|.-.+|||||++.|+|...
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999993458849999999970344
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.69 E-value=0.33 Score=21.22 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999969999889999999527778
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIVEL 962 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~~p 962 (1293)
.|+|-|.-||||||+++.|...+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.69 E-value=0.39 Score=20.60 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+++++|..|+|||||++-+.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999949899999997299
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.68 E-value=0.39 Score=20.66 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++.++|+.|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.66 E-value=0.31 Score=21.46 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999993999848999999945989
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
.+.+.||+|+||||++++++.++.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 699978999748799999999987
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.64 E-value=0.38 Score=20.69 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++.++|..|+|||||++.+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.60 E-value=0.44 Score=20.23 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++.++|..|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.57 E-value=0.41 Score=20.45 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+++++|..|+|||||++.+.+..
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989908899999997199
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.51 E-value=0.35 Score=21.03 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
++.++|+.||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.45 E-value=0.32 Score=21.28 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 96499889999699998899999995
Q 000774 932 TIPPSDKVGIVGRTGAGKSSMLNTLF 957 (1293)
Q Consensus 932 ~i~~Ge~~~ivG~~GsGKSTll~~l~ 957 (1293)
-+++|+.+-|.|+.|+||||+..-++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=85.42 E-value=0.34 Score=21.14 Aligned_cols=30 Identities=10% Similarity=0.160 Sum_probs=23.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 8899996999988999999952777886369999
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 970 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~ 970 (1293)
.++||.|+-||||||..+.|...+ |-..++
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf 899997999988999999999868----985980
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=85.28 E-value=0.61 Score=19.14 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999399984899999994598999
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELPPV 340 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~~~ 340 (1293)
+|.+=|.-|+||||+++.|...+...
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~ 33 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGG 33 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 99998886678999999999986569
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.28 E-value=0.46 Score=20.11 Aligned_cols=22 Identities=36% Similarity=0.535 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++.++|..|+|||||++-+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.27 E-value=0.61 Score=19.14 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|..|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.24 E-value=0.41 Score=20.48 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|..|+|||||++-+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.23 E-value=0.48 Score=19.97 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
+++++|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.15 E-value=0.44 Score=20.26 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|..|+|||||++-+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.06 E-value=0.32 Score=21.31 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999699998899999995277
Q 000774 939 VGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 939 ~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
+-+.||+|+||||+++.+...+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.04 E-value=0.25 Score=22.08 Aligned_cols=45 Identities=18% Similarity=0.369 Sum_probs=32.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCEEECCCC
Q ss_conf 89999699998899999995277788636999996168989688855016872666
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP 993 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 993 (1293)
-+-++||+|+|||-|.+.|.+.+.. --+..|+...+ ..||+..+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGGC-------------CCCCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCEEE---------ECCEEECCH
T ss_conf 4799899998899999999987389--88986255114---------111110444
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=85.02 E-value=0.32 Score=21.29 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999939998489999999459899
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELPP 339 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~~ 339 (1293)
-+.+.||+|+||||+.++++.++..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 4898799997388999999850388
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.99 E-value=0.42 Score=20.38 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|+.|+|||||++.+.+
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=84.94 E-value=0.49 Score=19.87 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=11.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++||||...+|||||++.+++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999789999899999999778
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.94 E-value=0.32 Score=21.30 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|..|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=84.89 E-value=0.2 Score=22.87 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999699998899999995277
Q 000774 939 VGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 939 ~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
+-+.||.|.||||+.+++.+.+
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988979987888999999984
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=84.81 E-value=0.37 Score=20.83 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=24.6
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 96499889999699998899999995277
Q 000774 932 TIPPSDKVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 932 ~i~~Ge~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
-+++|+.+-|.|++|+||||+..-+.--.
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 86288599999179999899999999999
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=84.80 E-value=0.32 Score=21.32 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=28.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCCEEEECCCCC
Q ss_conf 3994999993999848999999945989999873254091899907765
Q 000774 311 PVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW 359 (1293)
Q Consensus 311 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g~~~~~~~~i~~v~Q~~~ 359 (1293)
+...+++++|++|+||||.+--|+-.+. ..| .+|+.+.=+.+
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g------~kV~lit~Dt~ 51 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYK-KKG------FKVGLVGADVY 51 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHH-HTT------CCEEEEECCCS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------CCEEEEEEECC
T ss_conf 9998999989999998999999999999-779------93699972023
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.79 E-value=0.51 Score=19.77 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999939998489999999459899998
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELPPVSD 342 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~~~~g 342 (1293)
++.++|..|+|||||++-+.....|+.|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 9999999998889999988408979724
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.78 E-value=0.46 Score=20.06 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|+.|+|||||++.+..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.66 E-value=0.46 Score=20.10 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++.++|..|+|||||++-+.+-
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.65 E-value=0.5 Score=19.82 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++.++|..|+|||||++.+.+-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.63 E-value=0.47 Score=20.01 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|..|+|||||++-+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=84.55 E-value=0.65 Score=18.91 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=30.4
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEECCEE
Q ss_conf 964998899996999988999999952777-886369999961
Q 000774 932 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LERGRILIDGFD 973 (1293)
Q Consensus 932 ~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~-p~~G~I~i~g~~ 973 (1293)
-+++|.++-+.||+|+||||+.-.+..... +..-.+++|...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.54 E-value=0.34 Score=21.10 Aligned_cols=26 Identities=38% Similarity=0.405 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99889999699998899999995277
Q 000774 935 PSDKVGIVGRTGAGKSSMLNTLFRIV 960 (1293)
Q Consensus 935 ~Ge~~~ivG~~GsGKSTll~~l~g~~ 960 (1293)
|=-+|+|+||.++|||||++.|+|..
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 87999988999997999999980998
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.51 E-value=0.49 Score=19.84 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|..|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.45 E-value=0.47 Score=20.03 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=84.41 E-value=0.27 Score=21.90 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=25.4
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 964998899996999988999999952777
Q 000774 932 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 932 ~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
.++++..+.+.||.|+|||++.+.+.+++.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899767699989999888999999999859
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=84.38 E-value=0.22 Score=22.63 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=18.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9949999939998489999999459
Q 000774 312 VGSLVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 312 ~G~~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+-=+++++|.+|+|||||++-+.+.
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 6689999999999889999887338
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=84.36 E-value=0.34 Score=21.06 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999993999848999999945989
Q 000774 314 SLVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 314 ~~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
=++||||...+|||||+++|.+.-.
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~ 35 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVL 35 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 3799978999989999999977898
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.30 E-value=0.34 Score=21.06 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=16.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999399984899999994598
Q 000774 315 LVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
-+.+.||.|+|||++++.++.+.
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHHHH
T ss_conf 46876699888308999999874
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=84.28 E-value=0.6 Score=19.18 Aligned_cols=20 Identities=35% Similarity=0.336 Sum_probs=9.3
Q ss_pred CCEEEEECCCCCCHHHHHHH
Q ss_conf 98899996999988999999
Q 000774 936 SDKVGIVGRTGAGKSSMLNT 955 (1293)
Q Consensus 936 Ge~~~ivG~~GsGKSTll~~ 955 (1293)
|.-+.|.|++|+||||+...
T Consensus 14 g~gvl~~G~sG~GKStlal~ 33 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALE 33 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEEECCCCCHHHHHHH
T ss_conf 99999980899998999999
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.28 E-value=0.53 Score=19.64 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=16.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
+++++|..|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.27 E-value=0.37 Score=20.79 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
+++++|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.25 E-value=0.52 Score=19.67 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|..|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.15 E-value=0.36 Score=20.93 Aligned_cols=22 Identities=45% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999399984899999994598
Q 000774 316 VAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 316 ~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+.+.||+|+||||++++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.05 E-value=0.38 Score=20.75 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|.+|+|||||++-+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.02 E-value=0.51 Score=19.76 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++.++|.+|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.94 E-value=0.56 Score=19.44 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++.++|..|+|||||++-+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.89 E-value=0.42 Score=20.36 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.87 E-value=0.44 Score=20.23 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=24.0
Q ss_pred CEEEEECCCCCCHHHHHHHH-HCCCCCCCCE
Q ss_conf 88999969999889999999-5277788636
Q 000774 937 DKVGIVGRTGAGKSSMLNTL-FRIVELERGR 966 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l-~g~~~p~~G~ 966 (1293)
-++.++|.+|+|||||++-+ .+...|+-|-
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG~ 37 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSGI 37 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
T ss_conf 7799998999988999998950982788886
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.76 E-value=0.54 Score=19.56 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
+++++|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=83.75 E-value=0.35 Score=20.96 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999969999889999999527
Q 000774 939 VGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 939 ~~ivG~~GsGKSTll~~l~g~ 959 (1293)
+-+.||.|+|||++.+.+...
T Consensus 43 vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 998896999889999998620
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.74 E-value=0.42 Score=20.36 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|..|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=83.73 E-value=0.4 Score=20.56 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 949999939998489999999459899998
Q 000774 313 GSLVAIVGGTGEGKTSLISAMLGELPPVSD 342 (1293)
Q Consensus 313 G~~~~ivG~~GsGKSTLl~~l~g~~~~~~g 342 (1293)
...+.|.|+.|+||||+++.++..+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.73 E-value=0.56 Score=19.43 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|..|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.65 E-value=0.71 Score=18.64 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=33.2
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
Q ss_conf 98899838888999998999999999882894799970593101
Q 000774 1064 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 1107 (1293)
Q Consensus 1064 p~iliLDEpts~lD~~t~~~i~~~l~~~~~~~tvi~vsH~~~~~ 1107 (1293)
.+++++||.-. |.......+.+.+.+...++..|++|++.+-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 87999978110-89999999999985689886999973885636
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=83.57 E-value=0.3 Score=21.48 Aligned_cols=22 Identities=50% Similarity=0.684 Sum_probs=11.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999399984899999994598
Q 000774 316 VAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 316 ~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
+.+.||.|+|||++.+.++.++
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 8876689888359999999873
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.57 E-value=0.59 Score=19.25 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
++.++|..|+|||||++-+..-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.54 E-value=0.72 Score=18.61 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
+++++|.+|+|||+|++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.41 E-value=0.62 Score=19.09 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|..|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=83.38 E-value=0.52 Score=19.68 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=24.7
Q ss_pred CCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 94000027743994999993999848999999945
Q 000774 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 301 ~~l~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g 335 (1293)
..++..-+ --.|.-+.+.|++|+||||+...+..
T Consensus 3 ~~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 3 RSMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 32899999-99999999980899998999999998
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.25 E-value=0.42 Score=20.38 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=83.17 E-value=0.32 Score=21.34 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=17.7
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 499999399984899999994
Q 000774 314 SLVAIVGGTGEGKTSLISAML 334 (1293)
Q Consensus 314 ~~~~ivG~~GsGKSTLl~~l~ 334 (1293)
.-+.|+|++|||||++++.+.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHH
T ss_conf 658999079996899999999
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=83.02 E-value=0.29 Score=21.69 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=20.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9988999969999889999999527
Q 000774 935 PSDKVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 935 ~Ge~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
+-=++.++|+.|+|||||++-+.+-
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 6689999999999889999887338
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=83.02 E-value=0.61 Score=19.15 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=27.5
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 77439949999939998489999999459899
Q 000774 308 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 339 (1293)
Q Consensus 308 l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~ 339 (1293)
=.+++|.++-+.|++|+||||++..++.....
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~ 80 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 80 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 99667358998057774789999999999870
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.01 E-value=0.43 Score=20.34 Aligned_cols=21 Identities=33% Similarity=0.687 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.77 E-value=0.66 Score=18.88 Aligned_cols=21 Identities=38% Similarity=0.751 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|..|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.48 E-value=0.69 Score=18.71 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|..|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.42 E-value=0.43 Score=20.34 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=26.7
Q ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 01389649988999969999889999999527
Q 000774 928 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 928 ~vsl~i~~Ge~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
|.=+.+.+|++++|.|+.|+|||||+..+..-
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 10256367887776679998989999999998
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=82.40 E-value=0.54 Score=19.57 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999993999848999999945989
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
-+.+.||.|+||||+.+++++++.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 389889799878889999999849
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=82.10 E-value=0.63 Score=19.05 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899996999988999999952777
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
-+-+.||.|+|||++++.+...+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.04 E-value=0.54 Score=19.56 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=15.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499999399984899999994598
Q 000774 314 SLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 314 ~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.++++-|.-||||||+++.|.-.+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.99 E-value=0.54 Score=19.52 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
+++++|..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.87 E-value=0.32 Score=21.31 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|..|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.81 E-value=0.57 Score=19.35 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=35.7
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHHCEE
Q ss_conf 96499889999699998899999995277788636-9999961689896888550168
Q 000774 932 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR-ILIDGFDIAKFGLMDLRKILGI 988 (1293)
Q Consensus 932 ~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~-I~i~g~~i~~~~~~~~r~~i~~ 988 (1293)
-++.|.++-+.|++|+||||+.-.+.....-..|. |+||... .+++..+ +++|.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a-~~~Gv 110 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYA-KKLGV 110 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHH-HHHTC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHH-HHHCC
T ss_conf 8666336999648874889999999998754898899998976--6799999-98099
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.80 E-value=0.52 Score=19.68 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=28.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
Q ss_conf 998899838888999998999999999882894799970593101
Q 000774 1063 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 1107 (1293)
Q Consensus 1063 ~p~iliLDEpts~lD~~t~~~i~~~l~~~~~~~tvi~vsH~~~~~ 1107 (1293)
+.+++++||.-. +.......+...+......+..++++++.+.+
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCCCCCEEEEECCCCHHHH
T ss_conf 359999824432-32157787752011233333665314743021
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=81.73 E-value=0.78 Score=18.33 Aligned_cols=23 Identities=35% Similarity=0.283 Sum_probs=12.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 49988999969999889999999
Q 000774 934 PPSDKVGIVGRTGAGKSSMLNTL 956 (1293)
Q Consensus 934 ~~Ge~~~ivG~~GsGKSTll~~l 956 (1293)
-.|.-+.|.|++|+||||+.-.+
T Consensus 13 ~~g~gvli~G~sg~GKS~la~~l 35 (169)
T d1ko7a2 13 VYGVGVLITGDSGIGKSETALEL 35 (169)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHH
T ss_pred ECCEEEEEEECCCCCHHHHHHHH
T ss_conf 99999999808999999999999
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.72 E-value=0.51 Score=19.73 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8899996999988999999952777
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
.-+-+.||.|+|||++++.+.....
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 6468766998883089999998748
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=81.71 E-value=0.32 Score=21.26 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999993999848999999945989
Q 000774 314 SLVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 314 ~~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
=++.++|.+|+|||||++.+.+...
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7999999999878999999844888
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=81.64 E-value=0.48 Score=19.96 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=10.4
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999399984899999994
Q 000774 316 VAIVGGTGEGKTSLISAML 334 (1293)
Q Consensus 316 ~~ivG~~GsGKSTLl~~l~ 334 (1293)
++++|+.++|||||+..|+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALT 24 (204)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999478984999999999
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=81.62 E-value=0.52 Score=19.71 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999969999889999999527
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
.+|++|+-++|||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=81.59 E-value=0.3 Score=21.50 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=22.7
Q ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 0277439949999939998489999999459
Q 000774 306 INLDIPVGSLVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 306 i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
.=+.+-+|++++|.|+.|+|||+|+..+.-.
T Consensus 60 ~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 60 AMIPVGRGQRELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp TTSCCBTTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf 0145467766760067788857999997765
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.55 E-value=0.57 Score=19.37 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
+++++|..|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.47 E-value=0.59 Score=19.23 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=14.3
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999939998489999999
Q 000774 315 LVAIVGGTGEGKTSLISAM 333 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l 333 (1293)
++.++|.+|+|||||++-+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999989999989999988
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.46 E-value=0.79 Score=18.29 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|..|+|||+|++-+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=81.25 E-value=0.6 Score=19.21 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999939998489999999459899
Q 000774 314 SLVAIVGGTGEGKTSLISAMLGELPP 339 (1293)
Q Consensus 314 ~~~~ivG~~GsGKSTLl~~l~g~~~~ 339 (1293)
-+|.|=|.-|+||||+++.|...+..
T Consensus 6 lrI~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 6 LRIYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 69999888778899999999998734
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=81.24 E-value=0.56 Score=19.42 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|..|+|||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=81.21 E-value=0.58 Score=19.33 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999939998489999999459899
Q 000774 314 SLVAIVGGTGEGKTSLISAMLGELPP 339 (1293)
Q Consensus 314 ~~~~ivG~~GsGKSTLl~~l~g~~~~ 339 (1293)
=++||||-..+|||||+++|.+--.+
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~ 28 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIE 28 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 34888899999889999999779974
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.20 E-value=0.62 Score=19.11 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|..|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.19 E-value=0.57 Score=19.36 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 88999969999889999999527
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFRI 959 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g~ 959 (1293)
=++.++|..|+|||||++-+.+-
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.16 E-value=0.51 Score=19.74 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 88999969999889999999527778
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFRIVEL 962 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g~~~p 962 (1293)
..++|-|.-||||||+++.|...+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.14 E-value=0.35 Score=20.98 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999939998489999999459
Q 000774 315 LVAIVGGTGEGKTSLISAMLGE 336 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~ 336 (1293)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.93 E-value=0.77 Score=18.36 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|..|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.93 E-value=0.34 Score=21.07 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|..|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=80.91 E-value=0.58 Score=19.29 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=8.3
Q ss_pred CCCCEEEEECCCCCCHH
Q ss_conf 49988999969999889
Q 000774 934 PPSDKVGIVGRTGAGKS 950 (1293)
Q Consensus 934 ~~Ge~~~ivG~~GsGKS 950 (1293)
++|+.+-|.+|+|||||
T Consensus 5 ~~~~~~il~~~tGsGKT 21 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKT 21 (140)
T ss_dssp STTCEEEECCCTTSSTT
T ss_pred HCCCCEEEECCCCCCHH
T ss_conf 75996799817998855
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=80.82 E-value=0.52 Score=19.68 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499999399984899999994598
Q 000774 314 SLVAIVGGTGEGKTSLISAMLGEL 337 (1293)
Q Consensus 314 ~~~~ivG~~GsGKSTLl~~l~g~~ 337 (1293)
.-+.+.||.|+|||++.+.++.+.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 079988969998899999986201
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=80.68 E-value=0.84 Score=18.08 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999993999848999999945989
Q 000774 315 LVAIVGGTGEGKTSLISAMLGELP 338 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g~~~ 338 (1293)
-++++|+..+|||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 899997248869999999970412
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=80.58 E-value=0.4 Score=20.56 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=26.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 89999699998899999995277788636999
Q 000774 938 KVGIVGRTGAGKSSMLNTLFRIVELERGRILI 969 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g~~~p~~G~I~i 969 (1293)
+|.|-|+-|+||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99998886678999999999986569976998
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.58 E-value=0.61 Score=19.14 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=80.52 E-value=0.6 Score=19.18 Aligned_cols=120 Identities=12% Similarity=0.210 Sum_probs=54.5
Q ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCCCEEECCCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCHH
Q ss_conf 99999399984899999994---598999987325409189990776546724899872599999889999999809714
Q 000774 315 LVAIVGGTGEGKTSLISAML---GELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 391 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~---g~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~ 391 (1293)
-++|+|+.|+|||||...|+ |.... .|.+ .+..+..+ +.+++..+-+.. ...-
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v----------~~~~~~~D------------~~~~E~~r~~si-~~~~ 63 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK-IGEV----------HEGAATMD------------FMEQERERGITI-TAAV 63 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC------------------------------------------CCCCC-CCSE
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCC-CCCE----------ECCCEEEE------------CCHHHHHCCCCC-CCCE
T ss_conf 9999958989989999999996485340-2336----------51846985------------658887518860-0112
Q ss_pred HHHCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 772099998630267998-7792799999999986039988998076667199999999999871110896899980
Q 000774 392 DLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVT 467 (1293)
Q Consensus 392 ~~~~l~~~~~~~i~~~g~-~LSGGQkqRi~lAral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~~t~i~vt 467 (1293)
.--.+.+...+.++..|. ..+|--..-+.. .+.-|++. ++..++.+.|+ .+|+.+..... ..+++|.
T Consensus 64 ~~~~~~~~~~n~iDtPG~~dF~~e~~~~l~~-----~D~avlVv-da~~Gv~~~T~-~~w~~a~~~~l--P~i~fIN 131 (276)
T d2bv3a2 64 TTCFWKDHRINIIDAPGHVDFTIEVERSMRV-----LDGAIVVF-DSSQGVEPQSE-TVWRQAEKYKV--PRIAFAN 131 (276)
T ss_dssp EEEEETTEEEEEECCCSSSSCSTTHHHHHHH-----CCEEEEEE-ETTTSSCHHHH-HHHHHHHTTTC--CEEEEEE
T ss_pred EEECCCCEEEEEECCCCHHHHHHHHHHHHHH-----HHHEEEEC-CCCCCCCHHHH-HHHHHHHHCCC--CEEEEEE
T ss_conf 3431598389995278602269999999996-----30057732-25677446699-99999998599--9799986
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=80.45 E-value=0.59 Score=19.24 Aligned_cols=21 Identities=52% Similarity=0.729 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
-++++|+.|+|||||...|+.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999994889809999999999
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=80.41 E-value=0.44 Score=20.22 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8899996999988999999952777
Q 000774 937 DKVGIVGRTGAGKSSMLNTLFRIVE 961 (1293)
Q Consensus 937 e~~~ivG~~GsGKSTll~~l~g~~~ 961 (1293)
=++.++|+.|+|||||++.+..-..
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7999999999878999999844888
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.37 E-value=0.67 Score=18.84 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC
Q ss_conf 89999699998899999995--27778863
Q 000774 938 KVGIVGRTGAGKSSMLNTLF--RIVELERG 965 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~--g~~~p~~G 965 (1293)
++.++|.+|+|||||++-+. -.+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.16 E-value=0.38 Score=20.72 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899996999988999999952
Q 000774 938 KVGIVGRTGAGKSSMLNTLFR 958 (1293)
Q Consensus 938 ~~~ivG~~GsGKSTll~~l~g 958 (1293)
++.++|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.01 E-value=0.86 Score=17.98 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999993999848999999945
Q 000774 315 LVAIVGGTGEGKTSLISAMLG 335 (1293)
Q Consensus 315 ~~~ivG~~GsGKSTLl~~l~g 335 (1293)
+++++|..|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999699999999971
|