Citrus Sinensis ID: 000778
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1288 | 2.2.26 [Sep-21-2011] | |||||||
| O04716 | 1324 | DNA mismatch repair prote | yes | no | 0.983 | 0.956 | 0.643 | 0.0 | |
| P54276 | 1358 | DNA mismatch repair prote | yes | no | 0.806 | 0.765 | 0.384 | 0.0 | |
| P52701 | 1360 | DNA mismatch repair prote | yes | no | 0.791 | 0.75 | 0.384 | 0.0 | |
| Q9VUM0 | 1190 | Probable DNA mismatch rep | yes | no | 0.692 | 0.749 | 0.375 | 1e-161 | |
| O74502 | 1254 | DNA mismatch repair prote | yes | no | 0.760 | 0.781 | 0.339 | 1e-148 | |
| Q55GU9 | 1260 | DNA mismatch repair prote | yes | no | 0.662 | 0.676 | 0.339 | 1e-142 | |
| Q03834 | 1242 | DNA mismatch repair prote | yes | no | 0.679 | 0.704 | 0.325 | 1e-136 | |
| P20585 | 1137 | DNA mismatch repair prote | no | no | 0.651 | 0.737 | 0.284 | 8e-91 | |
| Q0UXL8 | 1119 | DNA mismatch repair prote | N/A | no | 0.649 | 0.747 | 0.289 | 1e-86 | |
| P13705 | 1091 | DNA mismatch repair prote | no | no | 0.649 | 0.766 | 0.288 | 4e-86 |
| >sp|O04716|MSH6_ARATH DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana GN=MSH6 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1674 bits (4335), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1345 (64%), Positives = 1025/1345 (76%), Gaps = 78/1345 (5%)
Query: 1 MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNP----------- 49
MAP +RQ +GRSPLVN QRQITSFF KS S S SP+ S + P
Sbjct: 1 MAPSRRQISGRSPLVNQQRQITSFFGKSASSSSSPSPSPSPSLSNKKTPKSNNPNPKSPS 60
Query: 50 ------------NPNPNSNSNRTPSPSPSPTTPSPLQSNPKKSRLVIGQTPSPPPSTPAA 97
NPNP+SN SPSP P TPSP+QS KK LVIGQTPSPP S
Sbjct: 61 PSPSPPKKTPKLNPNPSSNLP-ARSPSPGPDTPSPVQSKFKKPLLVIGQTPSPPQSV--- 116
Query: 98 AKSYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWV 157
+YG++V+ K++RVYWPLDK WY+G V +DK KH+V+Y+DGE+E LDLGKEK EWV
Sbjct: 117 VITYGDEVVGKQVRVYWPLDKKWYDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEKTEWV 176
Query: 158 --QESVSLLKRLRR--DSFKKVVVE--DDEEMENVEDEISDDRSDSSDDDWNKNVGKEDV 211
++S RL+R + +KVV + DD EM NVE++ SD S +D W KNVGKE
Sbjct: 177 VGEKSGDRFNRLKRGASALRKVVTDSDDDVEMGNVEEDKSDGDDSSDED-WGKNVGKEVC 235
Query: 212 -SEDEEVDLVDEQE-----------------NKVLR--GRKRKSS------GVKKSKSDG 245
SE+++V+LVDE E N+V + RKRK+S G KKSK+D
Sbjct: 236 ESEEDDVELVDENEMDEEELVEEKDEETSKVNRVSKTDSRKRKTSEVTKSGGEKKSKTDT 295
Query: 246 NAVNADFKSPIIKPVKIFG-SDKLSNGF-DNPVMGDVSERFSAREADKFHFLGPDRRDAK 303
+ FK+ +++P K G +D++ G DN + GD RF AR+++KF FLG DRRDAK
Sbjct: 296 GTILKGFKASVVEPAKKIGQADRVVKGLEDNVLDGDALARFGARDSEKFRFLGVDRRDAK 355
Query: 304 RRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHV 363
RRRP D YDPRTLYLPPDF++ L+ GQ+QWWEFK+KHMDKV+FFKMGKFYELFEMDAHV
Sbjct: 356 RRRPTDENYDPRTLYLPPDFVKKLTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHV 415
Query: 364 GAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSK 423
GAKELD+QYMKGEQPHCGFPE+NFS+N+EKL RKGYRVLVVEQTETP+QLE RRKE GSK
Sbjct: 416 GAKELDIQYMKGEQPHCGFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSK 475
Query: 424 DKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVAT 483
DKVVKRE+CAVVTKGTLT+GE+L NPDASYLMALTE +S + + + FG+C+VDVAT
Sbjct: 476 DKVVKREVCAVVTKGTLTDGEMLLTNPDASYLMALTEGGESLTNPTAEHNFGVCLVDVAT 535
Query: 484 SRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLS 543
+IILGQ DD DCS L CLLSE+RPVEIIKPA +LS TER I+R TRNPLVN+LVPLS
Sbjct: 536 QKIILGQFKDDQDCSALSCLLSEMRPVEIIKPAKVLSYATERTIVRQTRNPLVNNLVPLS 595
Query: 544 EFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQ 603
EFWD+E T+ E+ IY RI + + + + + GDG + LP +LSEL + +GS
Sbjct: 596 EFWDSEKTIYEVGIIYKRINCQP---SSAYSSEGKILGDGSSFLPKMLSELATEDKNGSL 652
Query: 604 VLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENS 663
LSALGG ++YL+++FLDE+LLRFAKFE LP F ++ +K +MVLDA ALENLE+FENS
Sbjct: 653 ALSALGGAIYYLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENS 712
Query: 664 RSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEF 723
R+G SGTLYAQLN C+TA GKRLL+TWLARPLYN+ LI+ERQDAVA LRG N P++LEF
Sbjct: 713 RNGGYSGTLYAQLNQCITASGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLEF 772
Query: 724 RKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACS 783
RK+LSRLPDMERL+AR+F+S EA+GRN +KVVLYED AKKQ+QEFIS L GCE M +ACS
Sbjct: 773 RKSLSRLPDMERLIARMFSSIEASGRNGDKVVLYEDTAKKQVQEFISTLRGCETMAEACS 832
Query: 784 SLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYD 843
SL AIL++ SR+L H+LTPG+ LP I S +K+FKDAFDWVEA+NSGR+IPH G D +YD
Sbjct: 833 SLRAILKHDTSRRLLHLLTPGQSLPNISSSIKYFKDAFDWVEAHNSGRVIPHEGADEEYD 892
Query: 844 SACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSS 903
ACK V+E E+SL KHLKEQRKLLGD SI YVT+GKD YLLEVPESL GSVP DYEL SS
Sbjct: 893 CACKTVEEFESSLKKHLKEQRKLLGDASINYVTVGKDEYLLEVPESLSGSVPHDYELCSS 952
Query: 904 KKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDA 963
KKG RYWTP IKKLL ELSQA+SEKESALKSI QRLIG+FCEH KWRQ+V+ATAELD
Sbjct: 953 KKGVSRYWTPTIKKLLKELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATAELDV 1012
Query: 964 LISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGG 1023
LISLA ASD YEG CRPVI S S+ P++SA LGHPVLR DSLG+G FVPN++ IGG
Sbjct: 1013 LISLAFASDSYEGVRCRPVISGSTSDGVPHLSATGLGHPVLRGDSLGRGSFVPNNVKIGG 1072
Query: 1024 HGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHI 1083
ASFILLTGPNMGGKSTLLRQVCLAVILAQ+GADVPAE FE+SPVD+I VRMGAKDHI
Sbjct: 1073 AEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDKICVRMGAKDHI 1132
Query: 1084 MAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRG 1143
MAGQSTFLTELSETA+ML+SATRNSLVVLDELGRGT+TSDGQAIAESVLEHF+ KVQCRG
Sbjct: 1133 MAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEKVQCRG 1192
Query: 1144 LFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARL 1203
FSTHYHRL+VDY+ +P+VSLCHMACQ+G G+GGVEEVTFLYRL+PGACPKSYGVNVARL
Sbjct: 1193 FFSTHYHRLSVDYQTNPKVSLCHMACQIGEGIGGVEEVTFLYRLTPGACPKSYGVNVARL 1252
Query: 1204 AGIPDKVLQKAVAKSTEFEAIYGKHKKESEENLPADHCVDHMVVLIQSLLNFTANLSCQK 1263
AG+PD VLQ+AV KS EFEA+YGK+ +++ DH + M+ I S + ++ S K
Sbjct: 1253 AGLPDYVLQRAVIKSQEFEALYGKNHRKT------DHKLAAMIKQIISSVASDSDYSASK 1306
Query: 1264 SSEGDGVTCLTELQRQAGLFFAQQN 1288
S L EL A F N
Sbjct: 1307 DS-------LCELHSMANTFLRLTN 1324
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Involved in post-replicative DNA-mismatch repair. Arabidopsis thaliana (taxid: 3702) |
| >sp|P54276|MSH6_MOUSE DNA mismatch repair protein Msh6 OS=Mus musculus GN=Msh6 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/1133 (38%), Positives = 619/1133 (54%), Gaps = 94/1133 (8%)
Query: 152 EKIEWVQESVSLLKRLRRDSFKKVVVEDDE-EMENVEDEIS-DDRSDSSDDDWNKNVGKE 209
E E Q SV +R R K+ V+ D E ++ + E D + + S DD + VG
Sbjct: 226 ESEEEAQPSVQGPRRSSRQVKKRRVISDSESDIGGSDVEFKPDTKQEGSSDDASSGVGDS 285
Query: 210 DVSEDEEVDLVDEQENKVLRGRKRKSSGVKKS--KSDGNAVNADFKSPIIKPVKIFGSDK 267
D E++ + K R + +KS K G+A A +PI+ K
Sbjct: 286 D---SEDLGTFGKGAPKRKRAMVAQGGLRRKSLKKETGSAKRA---TPILSETK-----S 334
Query: 268 LSNGFDNPVMGDVSERFSAREADK------FH----FLGPD-RRDAKRRRPGDVYYDPRT 316
+ F P + S D +H +L P+ RRD RRRP ++P T
Sbjct: 335 TLSAFSAPQNSESQTHVSGGGNDSSGPTVWYHETLEWLKPEKRRDEHRRRPDHPEFNPTT 394
Query: 317 LYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGE 376
LY+P +FL + + G ++WW+ KS++ D VIF+K+GKFYEL+ MDA +G EL L +MKG
Sbjct: 395 LYVPEEFLNSCTPGMRKWWQLKSQNFDLVIFYKVGKFYELYHMDAVIGVSELGLIFMKGN 454
Query: 377 QPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKG--SK-DKVVKREICA 433
H GFPE F + L +KGY+V VEQTETPE +E R ++ SK D+VV+REIC
Sbjct: 455 WAHSGFPEIAFGRFSDSLVQKGYKVARVEQTETPEMMEARCRKMAHVSKFDRVVRREICR 514
Query: 434 VVTKGTLTEGELLSANPD---ASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQ 490
++TKGT T +L +P + YL++L E + + + R +G+C VD + + +GQ
Sbjct: 515 IITKGTQTYS-VLDGDPSENYSRYLLSLKEKEEETSGHT--RVYGVCFVDTSLGKFFIGQ 571
Query: 491 VMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAET 550
DD CS L++ PV+I+ LS ET+ + + L L+P S+FWDA
Sbjct: 572 FSDDRHCSRFRTLVAHYPPVQILFEKGNLSTETKTVLKGSLSSCLQEGLIPGSQFWDATK 631
Query: 551 TVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDS--------GS 602
T+ +L + N GD T LP +L + S DS
Sbjct: 632 TL------------RTLLEGGYFTGN----GDSSTVLPLVLKGMTSESDSVGLTPGEESE 675
Query: 603 QVLSALGGTLFYLKKSFLDETLLRFAKFE------------LLPCSGFGDMAKKPYMVLD 650
LSALGG +FYLKK +D+ LL A FE + P + F +++ MVLD
Sbjct: 676 LALSALGGIVFYLKKCLIDQELLSMANFEEYFPLDSDTVSTVKPGAVFTKASQR--MVLD 733
Query: 651 APALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVA 710
A L NLE+F N +G + GTL +L+ C T FGKRLL+ WL PL + I +R DAV
Sbjct: 734 AVTLNNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLCSPSAISDRLDAVE 793
Query: 711 GLRGVNQPFALEFRKALSRLPDMERLLARLF-ASSEANGRN--SNKVVLYEDA--AKKQL 765
L V E L +LPD+ERLL+++ S +N ++ ++YE+ +KK++
Sbjct: 794 DLMAVPDKVT-EVADLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKI 852
Query: 766 QEFISALHGCELMDQACSSLGAILENTESRQLHHILT-----PGKGLPAIVSILKHFKDA 820
+F+SAL G ++M + L + S+ L ++T P P + + L+ + A
Sbjct: 853 IDFLSALEGFKVMCKVSGLLEEVAGGFTSKTLKQVVTLQSKSPKGRFPDLTAELQRWDTA 912
Query: 821 FDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKD 880
FD +A +G I P G D DYD A ++E E SL ++L +QR LG SI Y IG++
Sbjct: 913 FDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLDKQRSRLGCKSIVYWGIGRN 972
Query: 881 LYLLEVPESLRG-SVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQR 939
Y LE+PE+ ++P +YEL+S+KKG RYWT I+K L L AE ++++LK ++R
Sbjct: 973 RYQLEIPENFATRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDTSLKDCMRR 1032
Query: 940 LIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSL 999
L F ++H W+ V A LD L+ LA S +GP CRP I+ + P++ K
Sbjct: 1033 LFCNFDKNHKDWQSAVECIAVLDVLLCLANYSQGGDGPMCRPEIVLPGEDTHPFLEFKGS 1092
Query: 1000 GHPVLRSDSLGKGEFVPNDITIGG------HGNASFILLTGPNMGGKSTLLRQVCLAVIL 1053
HP + G +F+PNDI IG HG A +L+TGPNMGGKSTL+RQ L ++
Sbjct: 1093 RHPCITKTFFGD-DFIPNDILIGCEEEAEEHGKAYCVLVTGPNMGGKSTLIRQAGLLAVM 1151
Query: 1054 AQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLD 1113
AQ+G VPAE ++PVDR+F R+GA D IM+G+STF ELSETA +L AT +SLV++D
Sbjct: 1152 AQLGCYVPAEKCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLVLVD 1211
Query: 1114 ELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173
ELGRGT+T DG AIA +V++ ++CR LFSTHYH L DY K V L HMAC V N
Sbjct: 1212 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSKSVCVRLGHMACMVEN 1271
Query: 1174 GVG--GVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEAI 1224
E +TFLY+ GACPKSYG N ARLA +P++V+QK K+ EFE +
Sbjct: 1272 ECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFERM 1324
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Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS alpha, which binds to DNA mismatches thereby initiating DNA repair. When bound, MutS alpha bends the DNA helix and shields approximately 20 base pairs, and recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. After mismatch binding, forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. The ATPase activity associated with MutS alpha regulates binding similar to a molecular switch: mismatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts MutS alpha into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. This transition is crucial for mismatch repair. MutS alpha may also play a role in DNA homologous recombination repair. Mus musculus (taxid: 10090) |
| >sp|P52701|MSH6_HUMAN DNA mismatch repair protein Msh6 OS=Homo sapiens GN=MSH6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/1091 (38%), Positives = 609/1091 (55%), Gaps = 71/1091 (6%)
Query: 190 ISDDRSDSSDDDWN-KNVGKEDVSEDEEVDLVDEQEN-------KVLRGRKRKSSG---V 238
ISD SD D K KE+ S DE V + E+ KV R RKR +G +
Sbjct: 251 ISDSESDIGGSDVEFKPDTKEEGSSDEISSGVGDSESEGLNSPVKVARKRKRMVTGNGSL 310
Query: 239 KKSKSDGNAVNADFKSPII-----KPVKIFGSDKLSNGFDNPVMG-DVSERFSAREADKF 292
K+ S +A ++ I ++ F + + S + G D S R + +
Sbjct: 311 KRKSSRKETPSATKQATSISSETKNTLRAFSAPQNSESQAHVSGGGDDSSRPTVWYHETL 370
Query: 293 HFLGPD-RRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMG 351
+L + RRD RRRP +D TLY+P DFL + + G ++WW+ KS++ D VI +K+G
Sbjct: 371 EWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVG 430
Query: 352 KFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPE 411
KFYEL+ MDA +G EL L +MKG H GFPE F + L +KGY+V VEQTETPE
Sbjct: 431 KFYELYHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPE 490
Query: 412 QLELRRKEKG---SKDKVVKREICAVVTKGTLTEGELLSANPD---ASYLMALTESNQSP 465
+E R ++ D+VV+REIC ++TKGT T +L +P + YL++L E +
Sbjct: 491 MMEARCRKMAHISKYDRVVRREICRIITKGTQTYS-VLEGDPSENYSKYLLSLKEKEEDS 549
Query: 466 ASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETER 525
+ + R +G+C VD + + +GQ DD CS L++ PV+++ LS ET+
Sbjct: 550 SGHT--RAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETKT 607
Query: 526 AILRHTRNPLVNDLVPLSEFWDAETTV---LEIKNIYNRITAESLNKADSNVANSQAEGD 582
+ L L+P S+FWDA T+ LE + +++ + +E D
Sbjct: 608 ILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMTSESD 667
Query: 583 GLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFE--------LLP 634
+ PG SEL LSALGG +FYLKK +D+ LL A FE +
Sbjct: 668 SIGLTPGEKSEL---------ALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVS 718
Query: 635 CSGFGDMAKKPY--MVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWL 692
+ G + K Y MVLDA L NLE+F N +G + GTL +++ C T FGKRLL+ WL
Sbjct: 719 TTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWL 778
Query: 693 ARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLF-ASSEANGRN- 750
PL N I +R DA+ L V + E + L +LPD+ERLL+++ S +N
Sbjct: 779 CAPLCNHYAINDRLDAIEDLMVVPDKIS-EVVELLKKLPDLERLLSKIHNVGSPLKSQNH 837
Query: 751 -SNKVVLYEDA--AKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILT----- 802
++ ++YE+ +KK++ +F+SAL G ++M + + + + +S+ L +++
Sbjct: 838 PDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQTKN 897
Query: 803 PGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKE 862
P P + L + AFD +A +G I P G D DYD A ++E E SL ++L++
Sbjct: 898 PEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEK 957
Query: 863 QRKLLGDTSITYVTIGKDLYLLEVPESLRG-SVPRDYELRSSKKGFFRYWTPNIKKLLGE 921
QR +G +I Y IG++ Y LE+PE+ ++P +YEL+S+KKG RYWT I+K L
Sbjct: 958 QRNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLAN 1017
Query: 922 LSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRP 981
L AE ++ +LK ++RL F +++ W+ V A LD L+ LA S +GP CRP
Sbjct: 1018 LINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRP 1077
Query: 982 VILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGG------HGNASFILLTGP 1035
VIL + P++ K HP + G +F+PNDI IG +G A +L+TGP
Sbjct: 1078 VILLP-EDTPPFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGP 1135
Query: 1036 NMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELS 1095
NMGGKSTL+RQ L ++AQ+G VPAE+ ++P+DR+F R+GA D IM+G+STF ELS
Sbjct: 1136 NMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELS 1195
Query: 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155
ETA +L AT +SLV++DELGRGT+T DG AIA +V++ ++CR LFSTHYH L D
Sbjct: 1196 ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVED 1255
Query: 1156 YKKDPRVSLCHMACQVGNGVG--GVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQK 1213
Y ++ V L HMAC V N E +TFLY+ GACPKSYG N ARLA +P++V+QK
Sbjct: 1256 YSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQK 1315
Query: 1214 AVAKSTEFEAI 1224
K+ EFE +
Sbjct: 1316 GHRKAREFEKM 1326
|
Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS alpha, which binds to DNA mismatches thereby initiating DNA repair. When bound, MutS alpha bends the DNA helix and shields approximately 20 base pairs, and recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. After mismatch binding, forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. The ATPase activity associated with MutS alpha regulates binding similar to a molecular switch: mismatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts MutS alpha into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. This transition is crucial for mismatch repair. MutS alpha may also play a role in DNA homologous recombination repair. Homo sapiens (taxid: 9606) |
| >sp|Q9VUM0|MSH6_DROME Probable DNA mismatch repair protein Msh6 OS=Drosophila melanogaster GN=Msh6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 569 bits (1466), Expect = e-161, Method: Compositional matrix adjust.
Identities = 364/969 (37%), Positives = 528/969 (54%), Gaps = 77/969 (7%)
Query: 291 KFHFLGPDR-RDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFK 349
K FL PD+ +D + RRP YD TL++P FL LS G +QWW KS + D V+FFK
Sbjct: 224 KLEFLQPDKIKDKEGRRPDHPDYDKSTLHVPEKFLNGLSPGVRQWWVLKSDNYDCVLFFK 283
Query: 350 MGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTET 409
+GKFYEL+ MDA VG EL YM+GE H GFPE +F L +G++V VEQTET
Sbjct: 284 VGKFYELYHMDADVGVNELGFTYMRGEFAHSGFPEISFDKMSTILVDRGFKVARVEQTET 343
Query: 410 PEQLELRRKE-KGSK-DKVVKREICAVVTKGTLTEGELLSANPD--ASYLMALTESNQSP 465
P+ + R K K +K DKVV REIC + +GT G P+ +Y++A+ E ++
Sbjct: 344 PDMMTERCKRIKATKFDKVVAREICQITNRGTQVFGSQCKIGPNHQPNYMLAIVEKDEGT 403
Query: 466 ASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETER 525
S+ +G+C +D + LG+ DD +CS L L+S PV + + LS T++
Sbjct: 404 CSR-----YGVCFIDTSIGDFHLGEFEDDKNCSRLLTLVSHHMPVLFLNEKSALSQRTQQ 458
Query: 526 AILRHTRNPLVNDLVPLS--EFWDAETTVLEIKNIYNRITAESLNKADSN----VANSQA 579
I+R ++ + VP + AE T +K + R A +D N + Q+
Sbjct: 459 -IVRTVLGGILKEPVPGNGKHACSAEKT---LKLLAERYYAGP--GSDDNWPLVLRTMQS 512
Query: 580 EGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFEL-LPCSGF 638
+ D L P D+ L ALG +F++ K L+ +L A+++L +P
Sbjct: 513 DMDHLGLTPN---------DNYKLALKALGQCIFFIHKCKLEPKVLPMARYQLYVPPDQL 563
Query: 639 GDMA-------KKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTW 691
D ++ +MVLDA L NL + S L + L+HC T FGKRLL W
Sbjct: 564 ADAKPAVASTLRRSHMVLDATTLSNLRIIGEEHS------LLSTLDHCCTKFGKRLLHHW 617
Query: 692 LARPLYNSGLIRERQDAVAGLRGVNQPFAL-EFRKALSRLPDMERLLAR--LFASSEANG 748
L P + +I+ERQDA+ L + P L E R L+ +PD ER LA+ LF + +
Sbjct: 618 LCAPSCDVSVIKERQDAIGEL--IRMPTELQEVRALLAPMPDFERNLAQIHLFGNKQIKQ 675
Query: 749 RN--SNKVVLYEDAA--KKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPG 804
+ ++ +L+E+ K++LQ F++ L G + + ++ + T +++ + G
Sbjct: 676 MDHPDSRAILFEEKLYNKQKLQGFMAVLKGFNDLTK-LPTMFHQCKTTLLKRITQLPESG 734
Query: 805 KGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQR 864
P + L++F AFD A +G I P G+D +YD+A + E+E L +L EQ
Sbjct: 735 GSFPDLSKELQYFATAFDHDAAAKTGVIAPQAGMDAEYDAAMDSIGEVEKRLKTYLVEQE 794
Query: 865 KLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKG---FFRYWTPNIKKLLGE 921
+ G ITY K Y L+VPES + Y L KG RY T + LL +
Sbjct: 795 RHFG-CRITYFGSDKKRYQLDVPESHASKANKSYTLEGQTKGKKPSRRYTTAETRALLKD 853
Query: 922 LSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGP---T 978
+ AE + LK + +RL +F H+++W+Q + A LD L SLA Y G
Sbjct: 854 MQHAEDTRNMVLKDLARRLFEKFSNHYDQWKQCIDCVANLDVLGSLAE----YAGQQMVI 909
Query: 979 CRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMG 1038
C P ++ ++P+I + HP + + ++PN + +G A LLTGPNMG
Sbjct: 910 CVPELVSDA--DQPFIQLEEGYHPCANAST-----YIPNGLELGTASEAPLSLLTGPNMG 962
Query: 1039 GKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETA 1098
GKSTL+R+V L VI+AQ+GA +PA +S VDRIF R+GA+D I+AG STFL EL+ET+
Sbjct: 963 GKSTLMREVGLLVIMAQIGAHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETS 1022
Query: 1099 LMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158
L+L AT +SLV+LDELGRGT+T DG AIA SV+ +F+ ++CR LFSTHYH L +
Sbjct: 1023 LILKHATCHSLVLLDELGRGTATYDGTAIAASVV-NFLANLKCRTLFSTHYHNLIDFFHN 1081
Query: 1159 DPRVSLCHMACQVGNGVGG---VEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAV 1215
D R++L HMAC V N E VTFLY+ + GACPKSYG N A+LAG+P ++++A
Sbjct: 1082 DKRITLGHMACMVENEDNADPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAY 1141
Query: 1216 AKSTEFEAI 1224
S + EAI
Sbjct: 1142 ELSKKVEAI 1150
|
Involved in post-replicative DNA-mismatch repair. Drosophila melanogaster (taxid: 7227) |
| >sp|O74502|MSH6_SCHPO DNA mismatch repair protein msh6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=msh6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 527 bits (1357), Expect = e-148, Method: Compositional matrix adjust.
Identities = 362/1067 (33%), Positives = 559/1067 (52%), Gaps = 87/1067 (8%)
Query: 169 RDSFKKVVVEDDEEMENVE-DEISDDRSDSSDDDWNKNVGKEDV-SEDEEVDLVDEQENK 226
+ S K +V DDE + VE D IS+ S++S + ++V S DE+VD +
Sbjct: 217 KGSRHKRIVSDDESDDYVEPDHISEASSEAS-------LPIDEVESMDEDVDGYSDHSVS 269
Query: 227 VLRGRKRKSSGVKKSKSDGNAVNADFKSPIIKPV-KIFGSDKLSNGFDNPVMGDVSERFS 285
V +K S +K S+ + S I P + GS + N V+ +R
Sbjct: 270 VAAPIPKKES--RKESSNSLYESYRLGSQIASPSPSVSGSASPTKSNKNGVLNREEKRRQ 327
Query: 286 AREA------DKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKS 339
EA +++ +L D RDA + R GD YDPRTLY+PP +KQ+W+ K
Sbjct: 328 RMEAFKKENNERYEWL-LDVRDADQNRVGDPNYDPRTLYIPPSAWATFKPFEKQFWKIKK 386
Query: 340 KHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYM-KGEQPHCGFPERNFSMNVEKLARKG 398
MD V+FF+ GKFYEL+E DA +G + L+ + G PE +F + KG
Sbjct: 387 DLMDTVVFFQKGKFYELYENDAAIGHQVFSLKLTDRVNMKMVGIPEASFDYWASQFIAKG 446
Query: 399 YRVLVVEQTETPEQLELRRKEKGSKD-KVVKREICAVVTKGTLTEGELLSANPDASYLMA 457
YR+ V+Q ET E++ +++ K+ KVV+R + V+T GTL + +L+++ ++Y MA
Sbjct: 447 YRIARVDQLETALGKEIKDRQRTQKEEKVVQRGLTQVLTSGTLVDEAMLTSDL-STYCMA 505
Query: 458 LTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPAN 517
+ ES QS + + FGIC +D +T + + DD+ + L LL+++RP E+I +
Sbjct: 506 IKESLQSDNEEPS---FGICFIDTSTGGFHMCEFTDDIHRTKLDTLLTQVRPKELILEKS 562
Query: 518 MLSPETERAILRH-TRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVAN 576
+S ++ RAI + + + N + P +EFWD E EI I +
Sbjct: 563 KISQKSIRAIKYCVSSSSIWNFIKPYTEFWDNERVEREI------IAGDYFK-------- 608
Query: 577 SQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCS 636
+GL P IL +S +SA G +YL++ LD+ + F+ S
Sbjct: 609 -----NGLEGAPKILKSYLS---EKPLAISAFGALFWYLRQLKLDKDMCSMGNFDEYDAS 660
Query: 637 GFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPL 696
+ ++++ L+NLE+F NS G S GTL+ L CVT FGKRL TWL PL
Sbjct: 661 -----QQSTSLLMNGQTLKNLEIFSNSFDGGSEGTLFHLLCRCVTPFGKRLFHTWLCHPL 715
Query: 697 YNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVL 756
+ I R D V L N L +LPD+ERL++R+ A GR+
Sbjct: 716 RSGTAINARLDVVE-LIADNPVIRDTIWGFLHKLPDLERLISRVHA-----GRS------ 763
Query: 757 YEDAAKKQLQEFISALHGCELMDQACSSL-GAILENTESRQLHHILTPGKGLPAIVSILK 815
+ +F+ L G + ++ A L +E E L I+ + P + L+
Sbjct: 764 -------KPADFVRVLEGFQRINSAFDQLREEFMEVAEGTLLGEII---QSAPNMKEELE 813
Query: 816 HFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYV 875
+ AF+W +A+ G P G + +YD++ K E++ L L++ +K L +S+ +
Sbjct: 814 AWTRAFNWQKASEEGVFEPEIGFEAEYDTSQKYQSELKNELYALLEQYKKQLRCSSLNFK 873
Query: 876 TIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKS 935
IGK++Y +EVP ++ VP ++ S K RY+ ++K + +L +AE + +
Sbjct: 874 NIGKEVYQVEVPSDVK--VPVNWCKMSGTKKTNRYYNDELRKKIKKLLEAEELHLAIMSR 931
Query: 936 ILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYIS 995
+ ++ +F ++ +W ++ TA +D SL+ A+ P CRP I++ ++ ++
Sbjct: 932 MQEKFYIRFDSNYEQWLALIKYTASIDCFFSLSQAAAALGEPYCRPEIIE---QKDGHLY 988
Query: 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ 1055
+ L HP + + + FVPND+ +GG + + I+LTGPNM GKSTLLRQVC+AVI+AQ
Sbjct: 989 FEELRHPCINASAAST--FVPNDVVLGGE-SPNMIVLTGPNMAGKSTLLRQVCIAVIMAQ 1045
Query: 1056 VGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDEL 1115
+G VPA+ I+P+ I+ R+GA D IM+ +STF+ ELSET +L SLV+LDEL
Sbjct: 1046 LGCWVPAKRASITPMTSIYTRLGANDDIMSARSTFMVELSETKKILDECGPKSLVILDEL 1105
Query: 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175
GRGTST DG AIA +VL H V + C G FSTHY L VD+ +V L MA V
Sbjct: 1106 GRGTSTYDGHAIAYAVLHHLVSNIGCLGFFSTHYQSLCVDFMHHRQVRLMQMAAAVDE-- 1163
Query: 1176 GGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFE 1222
+ VTFLY+L G CPKSYG+NVA +AG+P+KV+ A K++E E
Sbjct: 1164 -KIRRVTFLYKLEDGICPKSYGMNVASMAGLPEKVIDAAEEKASELE 1209
|
Involved in post-replicative DNA-mismatch repair. Has a role towards base-base mispairs and insertion-deletion loops. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q55GU9|MSH6_DICDI DNA mismatch repair protein Msh6 OS=Dictyostelium discoideum GN=msh6 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust.
Identities = 314/926 (33%), Positives = 501/926 (54%), Gaps = 73/926 (7%)
Query: 312 YDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ 371
YD RTL++P L S ++Q+W+ KSK+ D V+FFK GKFYEL+E DA +G ++L L+
Sbjct: 345 YDKRTLHIPASCLSKFSPFERQFWDIKSKNYDTVVFFKKGKFYELYESDADIGHQQLHLK 404
Query: 372 YM-KGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKG---SKDKVV 427
+ G PE +F+ KL G++V V+Q ET + R+ EKG KD ++
Sbjct: 405 LTDRVNMRMVGVPEMSFNHWASKLIHLGHKVAKVDQMETSIGMAKRQNEKGGRNKKDSII 464
Query: 428 KREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRII 487
+RE+ +++T GTL + ++++ + ++YLMA+ E+ D+ +G+C VDV+
Sbjct: 465 QRELTSILTAGTLLDEQMIT-DQTSTYLMAIKENEY-------DKQYGVCFVDVSIGEFY 516
Query: 488 LGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILR--HTRNPLVNDLVPLSEF 545
L + DD + LL ++ P EI+ SP+T + R T P++N + L E+
Sbjct: 517 LCTIQDDDNRMQFETLLLQMMPKEIVYEKGATSPKTISIMKRVLSTVKPVMNARLSL-EY 575
Query: 546 WDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVL 605
WD T+ I + T E+L + + ++
Sbjct: 576 WDPTDTMERITQLCGGKTPETLCQMKNE----------------------------EYLM 607
Query: 606 SALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRS 665
ALGG + YL + +++ A+F+ G+ M+LD L NLE+F NS
Sbjct: 608 GALGGCISYLMDIKIGNSVVEQARFKRFNPLDIGNS-----MILDGQCLVNLEIFNNSTD 662
Query: 666 GDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRK 725
G + GTL+ ++ C TAFGKR+ R W+ RPL N I +RQ A+ LR + P L+
Sbjct: 663 GSTEGTLFKLMDRCTTAFGKRMFRQWICRPLANKNAIVDRQKAIEFLR--DSPETLQKVT 720
Query: 726 A-LSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQ-----EFISALH--GCEL 777
A L++LPD+ER++AR+ A + + + +++ K L+ E I ++H C
Sbjct: 721 AILNKLPDLERMIARIRAQTSKISDLISVLNHFDNIHSKLLELLDEAEQIESIHLRSCLF 780
Query: 778 MDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGG 837
MD + + + ++ G P + ++ + +F +E + R++P G
Sbjct: 781 MDNQQDNDDI---DEQENSNNNNNIRYSGYPNLKPYIERVRKSFT-IEQD---RVVPSKG 833
Query: 838 VDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRD 897
+ +++D ++ +E S KHL+EQ+ I Y +GK++Y +E+P + +P
Sbjct: 834 LFLEFDQCLGNIQSLEQSFAKHLEEQKAHFKCNKIEYKHMGKEIYQIEIPVAFTKKLPAG 893
Query: 898 YELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAA 957
+ L+SS RY +P + K L L + E K +L++++ F + N ++ +
Sbjct: 894 FSLKSSSSKVNRYHSPFVTKNLTSLLEERDTYEVLSKEVLKKILSNFAIYFNHFQIAITK 953
Query: 958 TAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPN 1017
++LD L+SL S CRP+ + S ++ +I K + HP + S S +F+PN
Sbjct: 954 LSQLDCLLSLYKVSFQSSIQMCRPLFVSS--DQRGFIDVKDMRHPCIYSKS--GDDFIPN 1009
Query: 1018 DITIGGHGNA-SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVR 1076
DI++ N S ++LTGPNMGGKSTLLRQ C+ VI+AQ+G V A E+S VDRIF R
Sbjct: 1010 DISLNTENNPPSLMVLTGPNMGGKSTLLRQSCILVIMAQMGCYVSASSCEMSIVDRIFTR 1069
Query: 1077 MGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFV 1136
+GA D+I+AGQSTF+ EL+ET+ +L AT+ SLV+LDELGRGTST DG +IA SVL +
Sbjct: 1070 LGANDNILAGQSTFMVELAETSAVLKYATKRSLVILDELGRGTSTFDGYSIAYSVLNYLA 1129
Query: 1137 HKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSY 1196
KVQ +F+THY LA + +S +M C V ++V FLY+L+ G CP SY
Sbjct: 1130 TKVQSMCIFATHYQSLAYEPTVRDLISTAYMTCHVDE---EAKKVIFLYKLASGVCPNSY 1186
Query: 1197 GVNVARLAGIPDKVLQKAVAKSTEFE 1222
G++VA +AG+P +++ KA KST+ E
Sbjct: 1187 GLHVASMAGLPREIITKAEEKSTQME 1212
|
Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with msh2 to form MutS alpha, which binds to DNA mismatches thereby initiating DNA repair. When bound, MutS alpha bends the DNA helix and recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. After mismatch binding, forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. The ATPase activity associated with MutS alpha regulates binding similar to a molecular switch: mismatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts MutS alpha into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. This transition is crucial for mismatch repair. MutS alpha may also play a role in DNA homologous recombination repair. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q03834|MSH6_YEAST DNA mismatch repair protein MSH6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSH6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 486 bits (1250), Expect = e-136, Method: Compositional matrix adjust.
Identities = 314/965 (32%), Positives = 499/965 (51%), Gaps = 90/965 (9%)
Query: 275 PVMGDVSERFSAREADKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQW 334
P S +F+ + +++ +L D RDA+RR D YDPRTLY+P + +KQ+
Sbjct: 260 PSATSKSSKFNKQNEERYQWL-VDERDAQRRPKSDPEYDPRTLYIPSSAWNKFTPFEKQY 318
Query: 335 WEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPH---CGFPERNFSMNV 391
WE KSK D ++FFK GKF+EL+E DA + DL+ G + + G PE +F
Sbjct: 319 WEIKSKMWDCIVFFKKGKFFELYEKDALLANALFDLKIAGGGRANMQLAGIPEMSFEYWA 378
Query: 392 EKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPD 451
+ + GY+V V+Q E+ E+R KG +VKRE+ ++T GTLT+G++L ++
Sbjct: 379 AQFIQMGYKVAKVDQRESMLAKEMREGSKG----IVKRELQCILTSGTLTDGDMLHSDL- 433
Query: 452 ASYLMALTES-----NQSPASQST------DRCFGICVVDVATSRIILGQVMDDLDCSVL 500
A++ +A+ E N++ ST + FG +D AT + + + DD +C+ L
Sbjct: 434 ATFCLAIREEPGNFYNETQLDSSTIVQKLNTKIFGAAFIDTATGELQMLEFEDDSECTKL 493
Query: 501 CCLLSELRPVEIIKPANMLSPETERAI-LRHTRNPLVNDLVPLSEFWDAETTVLEIKNIY 559
L+S++RP+E++ N LS + + N + N++ EF+D + T EI
Sbjct: 494 DTLMSQVRPMEVVMERNNLSTLANKIVKFNSAPNAIFNEVKAGEEFYDCDKTYAEI---- 549
Query: 560 NRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQV-LSALGGTLFYLKKS 618
I++E + + P +L S D+G +V SA GG L+YLK
Sbjct: 550 --ISSEYFSTEED--------------WPEVLK---SYYDTGKKVGFSAFGGLLYYLKWL 590
Query: 619 FLDETLLRFAKFELLPCSGFGDMAKKPY-MVLDAPALENLEVFENSRSGDSSGTLYAQLN 677
LD+ L+ + D K + MVLD L+NLE+F NS G GTL+ N
Sbjct: 591 KLDKNLISMKNIKEY------DFVKSQHSMVLDGITLQNLEIFSNSFDGSDKGTLFKLFN 644
Query: 678 HCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFAL--EFRKALSRLPDMER 735
+T GKR+++ WL PL I R D+V L Q L + S+LPD+ER
Sbjct: 645 RAITPMGKRMMKKWLMHPLLRKNDIESRLDSVDSLL---QDITLREQLEITFSKLPDLER 701
Query: 736 LLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESR 795
+LAR+ S ++ KV+ A + + E +L +L + + E
Sbjct: 702 MLARIH-SRTIKVKDFEKVI----TAFETIIELQDSLKNNDLKGDVSKYISSFPE----- 751
Query: 796 QLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEAS 855
+V +K + +AF+ +A N I+P G D+++D + +++E+E
Sbjct: 752 -------------GLVEAVKSWTNAFERQKAINENIIVPQRGFDIEFDKSMDRIQELEDE 798
Query: 856 LTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNI 915
L + L RK ++I Y GK++Y +E+P S +VP ++ ++ K + RY++ +
Sbjct: 799 LMEILMTYRKQFKCSNIQYKDSGKEIYTIEIPISATKNVPSNWVQMAANKTYKRYYSDEV 858
Query: 916 KKLLGELSQAESEKESALKSILQRLIGQFCEHHNK-WRQMVAATAELDALISLAIASDFY 974
+ L +++A+ ++ + + RL +F H+N W + A + +D L+++ S++
Sbjct: 859 RALARSMAEAKEIHKTLEEDLKNRLCQKFDAHYNTIWMPTIQAISNIDCLLAITRTSEYL 918
Query: 975 EGPTCRPVILDSCSNE-----EPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASF 1029
P+CRP I+D ++ ++ KSL HP + +F+PNDI +G
Sbjct: 919 GAPSCRPTIVDEVDSKTNTQLNGFLKFKSLRHPCFNLGATTAKDFIPNDIELGKE-QPRL 977
Query: 1030 ILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQST 1089
LLTG N GKST+LR C+AVI+AQ+G VP E ++P+DRI R+GA D+IM G+ST
Sbjct: 978 GLLTGANAAGKSTILRMACIAVIMAQMGCYVPCESAVLTPIDRIMTRLGANDNIMQGKST 1037
Query: 1090 FLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHY 1149
F EL+ET +L AT SL+V+DELGRG S+SDG AIAESVL H +Q G F+THY
Sbjct: 1038 FFVELAETKKILDMATNRSLLVVDELGRGGSSSDGFAIAESVLHHVATHIQSLGFFATHY 1097
Query: 1150 HRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDK 1209
LA +K P+V M+ V VTFLY++ G S+G++VA + GI +
Sbjct: 1098 GTLASSFKHHPQVRPLKMSILVDE---ATRNVTFLYKMLEGQSEGSFGMHVASMCGISKE 1154
Query: 1210 VLQKA 1214
++ A
Sbjct: 1155 IIDNA 1159
|
Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS alpha, which binds to DNA mismatches thereby initiating DNA repair. MSH6 provides substrate-binding and substrate-specificity to the complex. When bound, MutS alpha bends the DNA helix and shields approximately 20 base pairs. Acts mainly to repair base-base and single insertion-deletion mismatches that occur during replication, but can also repair longer insertion-deletion loops (IDLs), although with decreasing efficiency as the size of the extrahelical loop increases. After mismatch binding, forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis by the MutS alpha complex is crucial for MMR. Both subunits bind ATP, but with differing affinities, and their ATPase kinetics are also very different. MSH6 binds and hydrolyzes ATP rapidly, whereas MSH2 catalyzes ATP at a substantially slower rate. Binding to a mismatched base pair suppresses MSH6-catalyzed ATP hydrolysis, but not the activity of MSH2. ATP binding to both subunits is necessary to trigger a change in MutS alpha interaction with mismatched DNA, converting MutS alpha into a sliding clamp capable of hydrolysis-independent movement along DNA, and also facilitates formation of ternary complexes containing MutS and MutL proteins and the mismatch. May also be involved in resolution of recombination intermediates. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P20585|MSH3_HUMAN DNA mismatch repair protein Msh3 OS=Homo sapiens GN=MSH3 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 336 bits (861), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 264/927 (28%), Positives = 443/927 (47%), Gaps = 88/927 (9%)
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFSMNV 391
Q+ E K +H D V+ + G Y F DA + A+EL++ ++ P ++V
Sbjct: 235 QYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHV 294
Query: 392 EKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL------ 445
+L KGY+V VV+QTET + ++ + R++ A+ TK TL ++
Sbjct: 295 RRLVAKGYKVGVVKQTETAA----LKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKL 350
Query: 446 --------LSANPDASYLMALTESNQSPASQSTDRCF-GICVVDVATSRIILGQVMDDLD 496
+ + SYL+ ++E+ ++ + F GI V AT ++ D
Sbjct: 351 DDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDSFQDSAS 410
Query: 497 CSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIK 556
S L +S L+PVE++ P+ LS +TE I R T + +D + V +
Sbjct: 411 RSELETRMSSLQPVELLLPS-ALSEQTEALIHRATSVSVQDDRI----------RVERMD 459
Query: 557 NIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLK 616
NIY + + A + G + GI+ + V+ +L + YLK
Sbjct: 460 NIYFEYS-HAFQAVTEFYAKDTVDIKGSQIISGIV-------NLEKPVICSLAAIIKYLK 511
Query: 617 KSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQL 676
+ L++ L + F+ L +K +M ++ L NLE+ +N + G+L L
Sbjct: 512 EFNLEKMLSKPENFKQLS-------SKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVL 564
Query: 677 NHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERL 736
+H T+FG+R L+ W+ +PL I R DAV+ + + L +LPD+ER
Sbjct: 565 DHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERG 624
Query: 737 LARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQ 796
L ++ ++ + ++ + L+ + QA + A+ + +S
Sbjct: 625 LCSIY---------------HKKCSTQEFFLIVKTLYHLKSEFQAI--IPAVNSHIQSDL 667
Query: 797 LHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASL 856
L ++ +P ++S ++H+ + A + + D+ K+ EI+ +
Sbjct: 668 LRTVILE---IPELLSPVEHYLKILNEQAAKVGDKTELFKDLS-DFPLIKKRKDEIQGVI 723
Query: 857 TK---HLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTP 913
+ HL+E RK+L + S YVT+ +++E+ S +P D+ S K R+ +P
Sbjct: 724 DEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSP 783
Query: 914 NIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDF 973
I + L+Q + + + +F EH++ + V A +D + SLA +
Sbjct: 784 FIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAK- 842
Query: 974 YEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLT 1033
+G CRP + EE I K+ HPV+ + ++VPN+ + + +++T
Sbjct: 843 -QGDYCRPTV-----QEERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLS-EDSERVMIIT 895
Query: 1034 GPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTE 1093
GPNMGGKS+ ++QV L I+AQ+G+ VPAE I VD IF RMGA D+I GQSTF+ E
Sbjct: 896 GPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEE 955
Query: 1094 LSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153
L++TA ++ AT SLV+LDELGRGTST DG AIA + LE+F+ V+ LF THY +
Sbjct: 956 LTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC 1015
Query: 1154 -VDYKKDPRVSLCHMACQVGNGV-----GGVEE----VTFLYRLSPGACPKSYGVNVARL 1203
++ +V HM V G E+ VTFLY+++ G +SYG+NVA+L
Sbjct: 1016 ELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKL 1075
Query: 1204 AGIPDKVLQKAVAKSTEFEAIYGKHKK 1230
A +P ++L+KA KS E E + +K
Sbjct: 1076 ADVPGEILKKAAHKSKELEGLINTKRK 1102
|
Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS beta which binds to DNA mismatches thereby initiating DNA repair. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. MutS beta recognizes large insertion-deletion loops (IDL) up to 13 nucleotides long. After mismatch binding, forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. Homo sapiens (taxid: 9606) |
| >sp|Q0UXL8|MSH3_PHANO DNA mismatch repair protein MSH3 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=MSH3 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 322 bits (825), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 266/920 (28%), Positives = 433/920 (47%), Gaps = 83/920 (9%)
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-----EQPH-------- 379
Q+ + K KHMD VI ++G ++ F DA +KEL + + G E P
Sbjct: 224 QYLDIKRKHMDTVIVMEVGYKFKFFGEDARTASKELGIVCIPGKFRYDEHPSEAHYDRFA 283
Query: 380 -CGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKG 438
FP ++V++L + ++V VV Q ET + +++ R++ + TKG
Sbjct: 284 SASFPVHRLQVHVKRLVKANHKVGVVRQLETAAL----KAAGNNRNTPFVRKLTNLYTKG 339
Query: 439 TLT---EG-ELLSANPDAS-YLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMD 493
T EG E +A A+ YL+ +TE+N G+ V AT II D
Sbjct: 340 TYVDDIEGLETPTAGAQATGYLLCVTETNAKGWGTDEKVQVGLVAVQPATGDIIYDDFED 399
Query: 494 DLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVL 553
S + L + P E + + LS T++ ++ H N S E
Sbjct: 400 GFMRSEIETRLLHIAPAEFLIVGD-LSKATDK-LIHHLSASKTNVFGDRSRVERVEKPKT 457
Query: 554 EIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLF 613
Y+ I+ +K S+ +G IL ++ + + LSA+ +
Sbjct: 458 MAAQAYSHISNFYADKMKSSQEGGSEQG-------AILDKVHQLSEHVTICLSAM---IT 507
Query: 614 YLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLY 673
YL L E + K+ F + + YM+L+ L +LE+++N S G+L+
Sbjct: 508 YLSDYAL-EHVFDLTKY-------FQPFSARSYMLLNGNTLSSLEIYQNQTDYTSKGSLF 559
Query: 674 AQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKAL--SRLP 731
++ T FG+RLLR W+ RPL + + ER AV L+ A++ K L
Sbjct: 560 WTMDRTKTRFGQRLLRKWVGRPLIDKERLEERIAAVEELKEGEHTIAVDKVKFLLGKIKT 619
Query: 732 DMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCE--LMDQACSSLGAIL 789
D+E++L R++ + + + +D A + L G L+ +A S++ I
Sbjct: 620 DLEKVLIRIYYKKCSRPELLAALQILQDIASQYLSAKTPEQSGFSSILLSEAVSNVPKIY 679
Query: 790 ENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKV 849
E+ S L I + D + + D + +
Sbjct: 680 EDVNS-----------FLEKINAKAAKDDDKYGFFREEFEAE---------DINDLKLSI 719
Query: 850 KEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESL--RGSVPRDYELRSSKKGF 907
+E L H K+ LG T + YVT+ YL+EV VP ++ S+ K
Sbjct: 720 ASVEDDLNTHRKDAAAKLGKTKVDYVTVAGIEYLIEVKRKSVEEKKVPASWQQISATKTT 779
Query: 908 FRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISL 967
R+ TP +K++L E Q + +A + +RL+ + R V++ A LDAL+SL
Sbjct: 780 LRFHTPEVKRMLQERDQYKESLAAACDTAFKRLLDDIAAKYQSLRDCVSSLATLDALLSL 839
Query: 968 AIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNA 1027
A ++ + +P +++ E + + HP++ + L +VPND+ + G
Sbjct: 840 ATLAN--QPGYVKPTFVETT--ELDIVGGR---HPMV--EQLLLDAYVPNDVHLSGDATR 890
Query: 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQ 1087
+ +L+TGPNMGGKS+ +R L I+ Q+G+ VPAE ++ +D +F RMGA D+++ G+
Sbjct: 891 A-LLVTGPNMGGKSSYVRSAALIAIMGQIGSYVPAESAKLGMLDAVFTRMGALDNMLKGE 949
Query: 1088 STFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFST 1147
STF+ EL+ETA +L SAT SL++LDELGRGTST DG AIAE+VL++ + V LF T
Sbjct: 950 STFMVELNETADILRSATSRSLIILDELGRGTSTFDGVAIAEAVLDYVIRDVGALTLFIT 1009
Query: 1148 HYHRLA-VDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGI 1206
HY LA + + + + HM+ + + G +EV FLY ++ G +SYG+NVARLA +
Sbjct: 1010 HYQHLARLQDRFNGELKNVHMSFEERD---GGKEVVFLYEVAEGTSHRSYGLNVARLAKV 1066
Query: 1207 PDKVLQKAVAKSTEFEAIYG 1226
P+KV++ A KS+E E G
Sbjct: 1067 PEKVIETAEVKSSELEESMG 1086
|
Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS beta, which binds to DNA mismatches thereby initiating DNA repair. MSH3 provides substrate-binding and substrate-specificity to the complex. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. Acts mainly to repair insertion-deletion loops (IDLs) from 2 to 13 nucleotides in size, but can also repair base-base and single insertion-deletion mismatches that occur during replication. After mismatch binding, forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) (taxid: 321614) |
| >sp|P13705|MSH3_MOUSE DNA mismatch repair protein Msh3 OS=Mus musculus GN=Msh3 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 320 bits (821), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 269/932 (28%), Positives = 439/932 (47%), Gaps = 96/932 (10%)
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFSMNV 391
Q+ + K +H D V+ + G Y F DA + A+EL++ ++ P ++V
Sbjct: 193 QYLDMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHV 252
Query: 392 EKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELL----- 446
+L KGY+V VV+QTET + +K V R++ A+ TK TL GE +
Sbjct: 253 RRLVAKGYKVGVVKQTETAALKAI----GDNKSSVFSRKLTALYTKSTLI-GEDVNPLIR 307
Query: 447 ---SANPD-------ASYLMALTESNQSPASQST-DRCFGICVVDVATSRIILGQVMDDL 495
S N D +YL+ + E ++ + + G+ V AT ++ D
Sbjct: 308 LDDSVNIDEVMTDTSTNYLLCIYEEKENIKDKKKGNLSVGVVGVQPATGEVVFDCFQDSA 367
Query: 496 DCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEI 555
L +S L+PVE++ P+++ P TE I R T + +D + + T E
Sbjct: 368 SRLELETRISSLQPVELLLPSDLSEP-TEMLIQRATNVSVRDDRIRVERM---NNTYFEY 423
Query: 556 KNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYL 615
+ + +T A + G L G++ + V+ AL + YL
Sbjct: 424 SHAFQTVT--------EFYAREIVDSQGSQSLSGVI-------NLEKPVICALAAVIRYL 468
Query: 616 KKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQ 675
K+ L++ L + F+ L SG +M ++ L NLE+ +N + G+L
Sbjct: 469 KEFNLEKMLSKPESFKQLS-SGM------EFMRINGTTLRNLEMVQNQTDMKTKGSLLWV 521
Query: 676 LNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMER 735
L+H T+FG+R L+ W+ +PL I R DAV+ + + L +LPD+ER
Sbjct: 522 LDHTKTSFGRRKLKNWVTQPLLKLREINARLDAVSDVLHSESSVFEQIENLLRKLPDVER 581
Query: 736 LLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHG-CELMDQACSSLGAILENTES 794
L ++ K QEF + C+L + + + A+ + +S
Sbjct: 582 GLCSIYHK------------------KCSTQEFFLIVKSLCQLKSELQALMPAVNSHVQS 623
Query: 795 RQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKK---VKE 851
L ++ ++S ++H+ + A + + D+ K+ ++E
Sbjct: 624 DLLRALIV------ELLSPVEHYLKVLNGPAAKVGDKTELFKDLS-DFPLIKKRKNEIQE 676
Query: 852 IEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYW 911
+ S+ L+E RK+L S+ YVT+ +++E+ S +P D+ S K R+
Sbjct: 677 VIHSIQMRLQEFRKILKLPSLQYVTVSGQEFMIEIKNSAVSCIPADWVKVGSTKAVSRFH 736
Query: 912 TPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIAS 971
P I + L+Q + + + F EH++ + V A +D + SLA +
Sbjct: 737 PPFIVESYRRLNQLREQLVLDCNAEWLGFLENFGEHYHTLCKAVDHLATVDCIFSLAKVA 796
Query: 972 DFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFIL 1031
+G CRP + EE I K+ HP++ + +FVPN ++ + ++
Sbjct: 797 K--QGNYCRPTL-----QEEKKIIIKNGRHPMIDVLLGEQDQFVPNSTSLSD--SERVMI 847
Query: 1032 LTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFL 1091
+TGPNMGGKS+ ++QV L I+AQ+G+ VPAE I VD IF RMGA D+I G+STF+
Sbjct: 848 ITGPNMGGKSSYIKQVTLVTIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFM 907
Query: 1092 TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHR 1151
+L++TA ++ A+ SLV+LDELGRGTST DG AIA + LE+F+ V+ LF THY
Sbjct: 908 EQLTDTAEIIRRASPQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP 967
Query: 1152 LAVDYKKDP-RVSLCHMACQVG-----NGVGGVEE----VTFLYRLSPGACPKSYGVNVA 1201
+ K P +V HM V G +E+ VTFLY+++ G +SYG+NVA
Sbjct: 968 VCELEKCYPEQVGNYHMGFLVNEDESKQDSGDMEQMPDSVTFLYQITRGIAARSYGLNVA 1027
Query: 1202 RLAGIPDKVLQKAVAKSTEFEAIYGKHKKESE 1233
+LA +P +VLQKA KS E E + +K E
Sbjct: 1028 KLADVPREVLQKAAHKSKELEGLVSLRRKRLE 1059
|
Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS beta which binds to DNA mismatches thereby initiating DNA repair. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. MutS beta recognizes large insertion-deletion loops (IDL) up to 13 nucleotides long. After mismatch binding, forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1288 | ||||||
| 255548475 | 1306 | ATP binding protein, putative [Ricinus c | 0.993 | 0.980 | 0.723 | 0.0 | |
| 225437545 | 1297 | PREDICTED: DNA mismatch repair protein M | 0.982 | 0.976 | 0.707 | 0.0 | |
| 224128348 | 1288 | predicted protein [Populus trichocarpa] | 0.964 | 0.964 | 0.691 | 0.0 | |
| 297743972 | 1237 | unnamed protein product [Vitis vinifera] | 0.939 | 0.978 | 0.688 | 0.0 | |
| 356572787 | 1269 | PREDICTED: DNA mismatch repair protein M | 0.961 | 0.976 | 0.669 | 0.0 | |
| 147861780 | 1349 | hypothetical protein VITISV_032225 [Viti | 0.984 | 0.939 | 0.664 | 0.0 | |
| 15235223 | 1324 | DNA mismatch repair protein Msh6-1 [Arab | 0.983 | 0.956 | 0.643 | 0.0 | |
| 297814117 | 1326 | hypothetical protein ARALYDRAFT_912022 [ | 0.983 | 0.955 | 0.642 | 0.0 | |
| 334186287 | 1321 | DNA mismatch repair protein Msh6-1 [Arab | 0.981 | 0.956 | 0.641 | 0.0 | |
| 449436747 | 1307 | PREDICTED: DNA mismatch repair protein M | 0.975 | 0.960 | 0.653 | 0.0 |
| >gi|255548475|ref|XP_002515294.1| ATP binding protein, putative [Ricinus communis] gi|223545774|gb|EEF47278.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1840 bits (4765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 948/1311 (72%), Positives = 1074/1311 (81%), Gaps = 31/1311 (2%)
Query: 1 MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRT 60
MAP ++ +NGRSPLVNPQRQITSFF K+ SPSPSP+ S + + S ++ +
Sbjct: 1 MAPSRKPSNGRSPLVNPQRQITSFFCKTTSPSPSPSPSPSPAS-TLSKGQTPKSNPNPNP 59
Query: 61 PSPSPSPTTPSPLQSNPKKSRLVIGQTPSPPPSTP---AAAKSYGEDVLRKRIRVYWPLD 117
SP PTTPSP+QS KK LVIG+TP+P PS A S+G++V+ KR++VYWPLD
Sbjct: 60 KPSSPGPTTPSPVQSKTKKPLLVIGKTPTPSPSPSMPRVMANSFGKEVVEKRVKVYWPLD 119
Query: 118 KAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWVQESVSLLKRLRRDS--FKKV 175
K WYEGCVKS+D++ KHLVQYDD E+E+LDLG EKIEWV+ESV+ KRLRR S FK
Sbjct: 120 KTWYEGCVKSYDEDSGKHLVQYDDFEEEVLDLGNEKIEWVEESVTKFKRLRRGSLAFKNT 179
Query: 176 VVEDDEEMENV----EDEISDDRSDSSDDDWNKNVGKEDVSEDEEVDLVDEQENKVLRG- 230
V+ED EEM++V E+ D DSSD+DW KNV K D+SEDE+ DL DE E +G
Sbjct: 180 VIED-EEMKDVADIEEENACVDGDDSSDEDWAKNVDK-DISEDEDADLEDEVEEDSYKGA 237
Query: 231 ----RKRKSSGVKKSKSD----GNAVNADFKSPIIKPVKIFGS---DKLSNGFDNPVMGD 279
RKRK G K S G+ K I+PVK G+ + L NG N + D
Sbjct: 238 KSDSRKRKVYGAKASVKKKKSCGDVSEGAVKVSFIEPVKDGGNGFCNGLGNG--NASIND 295
Query: 280 VSERFSAREADKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKS 339
SERFS REA+K FLG +RRDAKR+RPGD YDPRTLYLPP F+++LS GQ+QWWEFKS
Sbjct: 296 ASERFSMREAEKMWFLGAERRDAKRKRPGDADYDPRTLYLPPSFVKSLSGGQRQWWEFKS 355
Query: 340 KHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGY 399
KHMDKV+FFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPER FSMNVEKL RKGY
Sbjct: 356 KHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERIFSMNVEKLTRKGY 415
Query: 400 RVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALT 459
RVLV+EQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELL+ANPDASYLMA+T
Sbjct: 416 RVLVIEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLTANPDASYLMAVT 475
Query: 460 ESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANML 519
ES Q+ Q+ + FGICV DVATSRIILGQ +DD +CS LC LLSELRPVEIIKPA L
Sbjct: 476 ESQQNLEGQNFEPTFGICVADVATSRIILGQFVDDSECSSLCRLLSELRPVEIIKPAKSL 535
Query: 520 SPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRIT----AESLNKADSNVA 575
S ETER +LRHTRNPLVNDLVPLSEFWDAE TV E+K IY I+ + SLNK D + A
Sbjct: 536 SSETERLLLRHTRNPLVNDLVPLSEFWDAEKTVHEVKIIYKHISDQSASRSLNKEDKDTA 595
Query: 576 NSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPC 635
N Q +G +CLP IL EL++ GD+G LSALGGTL+YLK++FLDETLLRFAKFE LPC
Sbjct: 596 NLQFTEEGPSCLPEILLELVNKGDNGRLALSALGGTLYYLKQAFLDETLLRFAKFESLPC 655
Query: 636 SGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARP 695
S F D+A+KPYM+LDA ALENLE+FENSR+G SGTLYAQLNHCVTAFGKRLL+TWLARP
Sbjct: 656 SDFCDVAQKPYMILDAAALENLEIFENSRNGGLSGTLYAQLNHCVTAFGKRLLKTWLARP 715
Query: 696 LYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVV 755
LY+ I +RQDAVAGLRGVNQP LEFRKALSRLPDMERL+AR+FASSEANGRN+NKV+
Sbjct: 716 LYHLRSIVDRQDAVAGLRGVNQPATLEFRKALSRLPDMERLIARIFASSEANGRNANKVI 775
Query: 756 LYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILK 815
LYEDAAKK LQEFISAL GCELM+QACSSL ILEN ESRQLHH+LTPGK P I SILK
Sbjct: 776 LYEDAAKKLLQEFISALRGCELMEQACSSLAVILENVESRQLHHLLTPGKSRPHIHSILK 835
Query: 816 HFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYV 875
HFK+AFDWVEANNSGR+IPH GVD++YDSAC+K++ IE+SLTKHLKEQ+K+LGD SI YV
Sbjct: 836 HFKEAFDWVEANNSGRVIPHEGVDIEYDSACEKLRVIESSLTKHLKEQQKILGDKSIMYV 895
Query: 876 TIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKS 935
T+GK+ YLLEVPE RGS+PRDYELRSSKKGF+RYWTP+IKKLLGELSQAESEKE ALK+
Sbjct: 896 TVGKEAYLLEVPEHFRGSIPRDYELRSSKKGFYRYWTPSIKKLLGELSQAESEKELALKN 955
Query: 936 ILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYIS 995
ILQRLI QFCEHH+KWRQ+ +ATAELD LISLAIASDFYEG CRPVIL S S+E P S
Sbjct: 956 ILQRLIVQFCEHHDKWRQLNSATAELDVLISLAIASDFYEGQACRPVILGSSSSEMPCFS 1015
Query: 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ 1055
AKSLGHP+L+SDSLGKG FVPND++IGG ASFILLTGPNMGGKSTLLRQVCLAVILAQ
Sbjct: 1016 AKSLGHPILKSDSLGKGAFVPNDVSIGGSDGASFILLTGPNMGGKSTLLRQVCLAVILAQ 1075
Query: 1056 VGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDEL 1115
VGADVPAE FE+SPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLV LDEL
Sbjct: 1076 VGADVPAESFELSPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVTLDEL 1135
Query: 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175
GRGTSTSDGQAIAESVLEHFVH+VQCRG+FSTHYHRL+VDY+KDP+VSLCHMACQVG GV
Sbjct: 1136 GRGTSTSDGQAIAESVLEHFVHRVQCRGMFSTHYHRLSVDYQKDPKVSLCHMACQVGRGV 1195
Query: 1176 GGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEAIYGKHKKESEEN 1235
G VEEVTFLYRL+PGACPKSYGVNVARLAG+PD +LQKA AKS EFE IYGKH++ SE N
Sbjct: 1196 GEVEEVTFLYRLTPGACPKSYGVNVARLAGLPDPILQKAAAKSREFEVIYGKHRRRSEGN 1255
Query: 1236 LPADHCVDHMVVLIQSLLNFTANLSCQKSSEGDGVTCLTELQRQAGLFFAQ 1286
L D M V +Q + + NL+ + SE G++ LTELQ +A +F Q
Sbjct: 1256 LTIQSNGDEMGVFLQHVFDVATNLTGNR-SESIGISSLTELQHRARVFLQQ 1305
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437545|ref|XP_002275930.1| PREDICTED: DNA mismatch repair protein Msh6-1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1783 bits (4618), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 931/1316 (70%), Positives = 1066/1316 (81%), Gaps = 50/1316 (3%)
Query: 1 MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRT 60
MAP +R +NGRSPLVN Q QIT+FFSK++S + +K + NP + +
Sbjct: 1 MAPTRRMSNGRSPLVNQQSQITAFFSKTSSSPSPSPVL----SKQDLNPK------PSPS 50
Query: 61 PSPSPSPTTPSPLQSNPKKSRLVIGQTPSPPPSTPA-AAKSYGEDVLRKRIRVYWPLDKA 119
PSPSPSPTTPSP+Q+ +K LVIG + + PSTP +KSYGE+V+ +R++VYWPLDK+
Sbjct: 51 PSPSPSPTTPSPVQAKLRKPLLVIGPSKTTSPSTPVTGSKSYGEEVVNRRVKVYWPLDKS 110
Query: 120 WYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWVQESVSLLKRLRRDS-FKKVVVE 178
WY GCVKSFD+ +HLVQYDD ++E LDLGKEKIEWV++ L+RLRR S F+K VV
Sbjct: 111 WYVGCVKSFDELTGEHLVQYDDADEETLDLGKEKIEWVEDKGRSLRRLRRGSVFEKGVVP 170
Query: 179 DDEEMENVEDEISDDRSDSSDDDWNKNVGKEDVSEDEEVDLV-------------DEQEN 225
E NVE+E D DSSD+DW K G+E+V +D E + ++
Sbjct: 171 VGEA--NVEEESGGD--DSSDEDWGKGKGREEVEDDSEDVEFEEEEDEEEEVEGPKKGQS 226
Query: 226 KVLRGRKRKSSGV------KKSKSDGNAVNADFKSPIIKPVKIFGSDKLSNGFDNPVMGD 279
K + +KRK+ G K+ KS G A FK ++P+K S K S+ DN + GD
Sbjct: 227 KKVDPKKRKAVGEGTMGSGKRRKSSGGAEKNTFKVSSVEPMKNAESRKASDILDNVLPGD 286
Query: 280 VSERFSAREADKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKS 339
ERF AREA+K FLG +R+DAKRR PGD YDPRTLYLPP+FL+NL+ GQ+QWWEFKS
Sbjct: 287 ALERFGAREAEKLPFLGGERKDAKRRCPGDANYDPRTLYLPPNFLKNLTGGQRQWWEFKS 346
Query: 340 KHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGY 399
+HMDKVIFFKMGKFYELFEMDAH+GAKELDLQYMKG QPHCGFPE+NFS+NVEKLARKGY
Sbjct: 347 RHMDKVIFFKMGKFYELFEMDAHIGAKELDLQYMKGGQPHCGFPEKNFSINVEKLARKGY 406
Query: 400 RVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALT 459
RVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE+LSANPDASYLMA+T
Sbjct: 407 RVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEMLSANPDASYLMAVT 466
Query: 460 ESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANML 519
ES Q +R FG+CVVDVATSRIILGQ DD +CS LCCLLSELRPVEIIKPAN+L
Sbjct: 467 ES-----CQFEERSFGVCVVDVATSRIILGQFRDDSECSTLCCLLSELRPVEIIKPANLL 521
Query: 520 SPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIY---NRITAE-SLNKADSNVA 575
SPETERA++RHTR+PLVN+LVP+SEFWD++ TV EI+++Y N ++ SLN+A+ +V
Sbjct: 522 SPETERALMRHTRSPLVNELVPISEFWDSKKTVSEIRSVYRCFNDLSVSGSLNEANLSVK 581
Query: 576 NSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPC 635
S E D L LP ILS+L++ G+SGS LSALGGTLFYLK++F+DETLLRFAKFEL P
Sbjct: 582 GSFVEEDPLG-LPDILSKLVNAGESGSLALSALGGTLFYLKQAFMDETLLRFAKFELFPY 640
Query: 636 SGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARP 695
SG D+ KPYMVLDA ALENLE+FENSR GDSSGTLYAQLNHCVTAFGKRLL+TWLARP
Sbjct: 641 SGVSDIFHKPYMVLDAAALENLEIFENSRKGDSSGTLYAQLNHCVTAFGKRLLKTWLARP 700
Query: 696 LYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVV 755
LY+ IRERQDAVAGLRGVN P ALEFRK LSRLPDMERLLAR+FASSEANGRN+NKVV
Sbjct: 701 LYHLDSIRERQDAVAGLRGVNLPSALEFRKELSRLPDMERLLARIFASSEANGRNANKVV 760
Query: 756 LYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILK 815
YEDAAKKQLQEFISAL GCELM QACSSLG ILEN ES LHH+LTPGKGLP I S++
Sbjct: 761 FYEDAAKKQLQEFISALRGCELMTQACSSLGVILENVESGLLHHLLTPGKGLPDIHSVIN 820
Query: 816 HFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYV 875
HFK+AFDWVEANNSGRIIPH GVD +YDSACK VKEIE L KHLKEQ+KLLGD SI +V
Sbjct: 821 HFKEAFDWVEANNSGRIIPHEGVDKEYDSACKTVKEIELRLKKHLKEQQKLLGDASINFV 880
Query: 876 TIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKS 935
TIGK+ YLLEVPESLRG++PRDYELRSSKKGFFRYWTPNIKK LGELS AESEKES L+S
Sbjct: 881 TIGKEAYLLEVPESLRGNIPRDYELRSSKKGFFRYWTPNIKKFLGELSHAESEKESKLRS 940
Query: 936 ILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILD-SCSNEEPYI 994
ILQRLI +FCEHH+KWRQ+V++TAELD LISLAIA+D+YEGPTCRPVI S SNE P
Sbjct: 941 ILQRLISRFCEHHDKWRQLVSSTAELDVLISLAIANDYYEGPTCRPVISGLSNSNEVPCF 1000
Query: 995 SAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA 1054
+AKSLGHPVLRSDSLGKG FVPNDITIGG +A FILLTGPNMGGKSTLLRQVCLAVILA
Sbjct: 1001 TAKSLGHPVLRSDSLGKGTFVPNDITIGGSDHACFILLTGPNMGGKSTLLRQVCLAVILA 1060
Query: 1055 QVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDE 1114
QVGADVPAE FE+SPVDRIFVRMGAKD+IMAGQSTFLTELSETA ML+SAT NSLV LDE
Sbjct: 1061 QVGADVPAESFELSPVDRIFVRMGAKDNIMAGQSTFLTELSETASMLTSATCNSLVALDE 1120
Query: 1115 LGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174
LGRGTSTSDGQAIAESVLEHFVHKV+CRG+FSTHYHRLAVDYKK+ +VSLCHMACQVG G
Sbjct: 1121 LGRGTSTSDGQAIAESVLEHFVHKVRCRGMFSTHYHRLAVDYKKNSKVSLCHMACQVGKG 1180
Query: 1175 VGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEAIYGKHKKES-- 1232
VGGVEEVTFLYRL PGACPKSYGVNVARLAG+P+ VLQKA AKS E E IYG+H+K S
Sbjct: 1181 VGGVEEVTFLYRLRPGACPKSYGVNVARLAGLPNSVLQKAAAKSREIEGIYGRHRKGSDD 1240
Query: 1233 --EENLPADHCVDHMVVLIQSLLNFTANLSCQKSSEGDGVTCLTELQRQAGLFFAQ 1286
+E L + + D +V IQSL+N A LS KS + + L++LQ++A +F Q
Sbjct: 1241 GCDERLSSQNSEDDVVFFIQSLINGVAKLSYHKSFKDIHASSLSDLQQRARIFLDQ 1296
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128348|ref|XP_002320307.1| predicted protein [Populus trichocarpa] gi|222861080|gb|EEE98622.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1782 bits (4616), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 919/1329 (69%), Positives = 1053/1329 (79%), Gaps = 87/1329 (6%)
Query: 1 MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPT--ISKLNPNKSNSNPNPNPNSNSN 58
MAP ++ +NGRSP+VNPQRQIT+FFSK+ +PSPSP+ +SK KS++ PNPNP+S +
Sbjct: 1 MAPSRKPSNGRSPIVNPQRQITAFFSKTTTPSPSPSPTLSKKQIPKSHTKPNPNPSSRTQ 60
Query: 59 RTPSPSPSPTTPSPLQSNPKKSRLVIGQTPSPPPSTPAAAKSYGEDVLRKRIRVYWPLDK 118
S +P+ +QS PKK LVIGQTPSP PS YG++ + +R+RVYWPLDK
Sbjct: 61 SPSSSPTTPSP---VQSKPKKPLLVIGQTPSPSPSKVGV---YGKEAVERRVRVYWPLDK 114
Query: 119 AWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWVQESVSLLKRLRRDS--FKKVV 176
+WYEG VKS+D E KHL+QYDD E+ELLDL EKIEWV+ V KRLRR S F+K+V
Sbjct: 115 SWYEGLVKSYDDESKKHLIQYDDSEEELLDLNNEKIEWVEPCVKKFKRLRRGSLGFRKIV 174
Query: 177 VEDDEEMENVEDEISDDRSDSSDDD-----WNKNVGKEDVSEDEEVDLVDEQE------- 224
+EDDE MENVE + S DD W KN K DVSE+E+VDL+DE+E
Sbjct: 175 LEDDE-MENVEGDNGGAGGGSGGDDSSDEDWGKNAEK-DVSEEEDVDLMDEEEADDGKKG 232
Query: 225 -NKVLRGRKRKSSGV-------KKSKSDGNAVNADFKSPIIKPVKIFGSDKLSNGFDNPV 276
RKRK+SG KK KS G+A + +++PVK
Sbjct: 233 KRGGKDSRKRKASGEGGKLDLGKKGKSGGDASTGGVRVSVVEPVK--------------- 277
Query: 277 MGDVSERFSAREADKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWE 336
H +RRDAKRRRPGDV YDPRTLYLP +F ++L+ GQ+QWWE
Sbjct: 278 ----------------HKESKERRDAKRRRPGDVDYDPRTLYLPAEFAKSLTGGQRQWWE 321
Query: 337 FKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLAR 396
FKSKHMDKV+FFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPE+NFS+NVEKLAR
Sbjct: 322 FKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPEKNFSLNVEKLAR 381
Query: 397 KGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLM 456
KGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAV+TKGTLTEGE LSANPDASYLM
Sbjct: 382 KGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVITKGTLTEGEFLSANPDASYLM 441
Query: 457 ALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPA 516
ALTES QS A+Q +R FG+CVVDV TSRIILGQ DD +CS LCCLLSELRPVEI+KPA
Sbjct: 442 ALTESRQSLANQGLERIFGVCVVDVTTSRIILGQFGDDAECSSLCCLLSELRPVEIVKPA 501
Query: 517 NMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRI----TAESLNKADS 572
MLS ETER ++RHTRNPLVN+L PLSEFWDAE TV E+K IY I + LNK D
Sbjct: 502 KMLSSETERVMVRHTRNPLVNELAPLSEFWDAERTVQEVKTIYKHIGDLSASGPLNKTDL 561
Query: 573 NVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFEL 632
+ N +CLP IL E ++ G++GS LSALGG+L+YLK++FLDETLLRFAKFE
Sbjct: 562 DTTNLNVGEYRPSCLPSILLEFVNKGENGSLALSALGGSLYYLKQAFLDETLLRFAKFES 621
Query: 633 LPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWL 692
LPCS F ++AKKPYM+LDA ALENLE+FENSR+GD+SGTLYAQLNHCVTAFGKRLL+TWL
Sbjct: 622 LPCSDFCEVAKKPYMILDAAALENLEIFENSRNGDTSGTLYAQLNHCVTAFGKRLLKTWL 681
Query: 693 ARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSN 752
ARPLY+ I++RQDAVAGLRGVNQP LEF+K LS LPD+ERLLAR+F++SEANGRN+N
Sbjct: 682 ARPLYHLESIKDRQDAVAGLRGVNQPMMLEFQKVLSGLPDIERLLARIFSTSEANGRNAN 741
Query: 753 KVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVS 812
KVVLYEDAAKKQLQEFISAL GCEL+ QACSSL ILEN ES +LHH+LTPGKGLP I+
Sbjct: 742 KVVLYEDAAKKQLQEFISALRGCELVAQACSSLAVILENVESGRLHHLLTPGKGLPDILP 801
Query: 813 ILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSI 872
ILKHFK AFDWVEANNSGRIIPH GVD++YDSAC+KVKE+E+SL +HLKEQ+KLLGD SI
Sbjct: 802 ILKHFKSAFDWVEANNSGRIIPHEGVDVEYDSACEKVKEVESSLARHLKEQQKLLGDKSI 861
Query: 873 TYVTIGKDLYLLEVPESLRGSVPRDYELRSSKK----------------GFFRYWTPNIK 916
TYVT+GK+ YLLEVPE LRGS+P+DYELRSSKK GF+RYWTP+IK
Sbjct: 862 TYVTVGKEAYLLEVPEHLRGSIPQDYELRSSKKIGSVSASMPIKAGRFQGFYRYWTPSIK 921
Query: 917 KLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEG 976
K LGELSQAESEKESALKSILQRLI FC++H+KWRQ+V+ATAELD LISLAIASDFYEG
Sbjct: 922 KFLGELSQAESEKESALKSILQRLIVCFCKYHDKWRQLVSATAELDVLISLAIASDFYEG 981
Query: 977 PTCRPVIL-DSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGP 1035
P C P I+ S S++ P +SAK LGHPVLRSDSLGKG FVPNDI+IGG G A FILLTGP
Sbjct: 982 PACCPTIVGSSLSSQVPCLSAKKLGHPVLRSDSLGKGAFVPNDISIGGSGRARFILLTGP 1041
Query: 1036 NMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELS 1095
NMGGKSTLLRQVCLAVILAQ+GADVPAE FE+SPVDRIFVRMGAKDHIMAGQSTFLTELS
Sbjct: 1042 NMGGKSTLLRQVCLAVILAQIGADVPAESFELSPVDRIFVRMGAKDHIMAGQSTFLTELS 1101
Query: 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155
ETALMLSSAT NSLV LDELGRGTSTSDGQAIAESVLEHFVHKVQCRG+FSTHYHRLAVD
Sbjct: 1102 ETALMLSSATCNSLVALDELGRGTSTSDGQAIAESVLEHFVHKVQCRGMFSTHYHRLAVD 1161
Query: 1156 YKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAV 1215
Y+KD +VSL HM+CQVGNGV GVEEVTFLYRL PGACPKSYGVNVARLAG+PD +L A
Sbjct: 1162 YQKDSKVSLYHMSCQVGNGV-GVEEVTFLYRLRPGACPKSYGVNVARLAGLPDSILHNAA 1220
Query: 1216 AKSTEFEAIYGKHKKESEENLPADHCVDHMVVLIQSLLNFTANLSCQKSSEGDGVTCLTE 1275
AKS EFEA+YG+H+K SE L C D M VLI+SL+N T +LS KS+ G ++ +T+
Sbjct: 1221 AKSREFEAVYGRHRKGSEGKLAIQSC-DKMAVLIRSLINATTSLSGHKSA-GIDISSVTK 1278
Query: 1276 LQRQAGLFF 1284
LQ +A +F
Sbjct: 1279 LQDKARIFL 1287
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743972|emb|CBI36942.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1751 bits (4535), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 903/1312 (68%), Positives = 1026/1312 (78%), Gaps = 102/1312 (7%)
Query: 1 MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRT 60
MAP +R +NGRSPLVN Q QIT+FFSK++S + K
Sbjct: 1 MAPTRRMSNGRSPLVNQQSQITAFFSKTSSSPSPSPLRK--------------------- 39
Query: 61 PSPSPSPTTPSPLQSNPKKSRLVIGQTPSPPPSTPA-AAKSYGEDVLRKRIRVYWPLDKA 119
PL LVIG + + PSTP +KSYGE+V+ +R++VYWPLDK+
Sbjct: 40 -----------PL--------LVIGPSKTTSPSTPVTGSKSYGEEVVNRRVKVYWPLDKS 80
Query: 120 WYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWVQESVSLLKRLRRDS-FKKVVVE 178
WY GCVKSFD+ +HLVQYDD ++E LDLGKEKIEWV++ L+RLRR S F+K VV
Sbjct: 81 WYVGCVKSFDELTGEHLVQYDDADEETLDLGKEKIEWVEDKGRSLRRLRRGSVFEKGVVP 140
Query: 179 DDEEMENVEDEISDDRSDSSDDDWNKNVGKEDVSEDEEVDLV-------------DEQEN 225
E NVE+E D DSSD+DW K G+E+V +D E + ++
Sbjct: 141 VGEA--NVEEESGGD--DSSDEDWGKGKGREEVEDDSEDVEFEEEEDEEEEVEGPKKGQS 196
Query: 226 KVLRGRKRKSSGV------KKSKSDGNAVNADFKSPIIKPVKIFGSDKLSNGFDNPVMGD 279
K + +KRK+ G K+ KS G A FK ++P+K S K S+ DN + GD
Sbjct: 197 KKVDPKKRKAVGEGTMGSGKRRKSSGGAEKNTFKVSSVEPMKNAESRKASDILDNVLPGD 256
Query: 280 VSERFSAREADKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKS 339
ERF AREA+K FLG +R+DAKRR PGD YDPRTLYLPP+FL+NL+ GQ+QWWEFKS
Sbjct: 257 ALERFGAREAEKLPFLGGERKDAKRRCPGDANYDPRTLYLPPNFLKNLTGGQRQWWEFKS 316
Query: 340 KHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGY 399
+HMDKVIFFKMGKFYELFEMDAH+GAKELDLQYMKG QPHCGFPE+NFS+NVEKLARKGY
Sbjct: 317 RHMDKVIFFKMGKFYELFEMDAHIGAKELDLQYMKGGQPHCGFPEKNFSINVEKLARKGY 376
Query: 400 RVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALT 459
RVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE+LSANPDASYLMA+T
Sbjct: 377 RVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEMLSANPDASYLMAVT 436
Query: 460 ESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANML 519
ES Q +R FG+CVVDVATSRIILGQ DD +CS LCCLLSELRPVEIIKPAN+L
Sbjct: 437 ES-----CQFEERSFGVCVVDVATSRIILGQFRDDSECSTLCCLLSELRPVEIIKPANLL 491
Query: 520 SPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQA 579
SPETERA++RHTR+PLVN+LVP+SEFWD++ TV EI+++Y
Sbjct: 492 SPETERALMRHTRSPLVNELVPISEFWDSKKTVSEIRSVYR------------------- 532
Query: 580 EGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFG 639
C + L++ G+SGS LSALGGTLFYLK++F+DETLLRFAKFEL P SG
Sbjct: 533 ------CFNDL--SLVNAGESGSLALSALGGTLFYLKQAFMDETLLRFAKFELFPYSGVS 584
Query: 640 DMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNS 699
D+ KPYMVLDA ALENLE+FENSR GDSSGTLYAQLNHCVTAFGKRLL+TWLARPLY+
Sbjct: 585 DIFHKPYMVLDAAALENLEIFENSRKGDSSGTLYAQLNHCVTAFGKRLLKTWLARPLYHL 644
Query: 700 GLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYED 759
IRERQDAVAGLRGVN P ALEFRK LSRLPDMERLLAR+FASSEANGRN+NKVV YED
Sbjct: 645 DSIRERQDAVAGLRGVNLPSALEFRKELSRLPDMERLLARIFASSEANGRNANKVVFYED 704
Query: 760 AAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKD 819
AAKKQLQEFISAL GCELM QACSSLG ILEN ES LHH+LTPGKGLP I S++ HFK+
Sbjct: 705 AAKKQLQEFISALRGCELMTQACSSLGVILENVESGLLHHLLTPGKGLPDIHSVINHFKE 764
Query: 820 AFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGK 879
AFDWVEANNSGRIIPH GVD +YDSACK VKEIE L KHLKEQ+KLLGD SI +VTIGK
Sbjct: 765 AFDWVEANNSGRIIPHEGVDKEYDSACKTVKEIELRLKKHLKEQQKLLGDASINFVTIGK 824
Query: 880 DLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQR 939
+ YLLEVPESLRG++PRDYELRSSKKGFFRYWTPNIKK LGELS AESEKES L+SILQR
Sbjct: 825 EAYLLEVPESLRGNIPRDYELRSSKKGFFRYWTPNIKKFLGELSHAESEKESKLRSILQR 884
Query: 940 LIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILD-SCSNEEPYISAKS 998
LI +FCEHH+KWRQ+V++TAELD LISLAIA+D+YEGPTCRPVI S SNE P +AKS
Sbjct: 885 LISRFCEHHDKWRQLVSSTAELDVLISLAIANDYYEGPTCRPVISGLSNSNEVPCFTAKS 944
Query: 999 LGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058
LGHPVLRSDSLGKG FVPNDITIGG +A FILLTGPNMGGKSTLLRQVCLAVILAQVGA
Sbjct: 945 LGHPVLRSDSLGKGTFVPNDITIGGSDHACFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1004
Query: 1059 DVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRG 1118
DVPAE FE+SPVDRIFVRMGAKD+IMAGQSTFLTELSETA ML+SAT NSLV LDELGRG
Sbjct: 1005 DVPAESFELSPVDRIFVRMGAKDNIMAGQSTFLTELSETASMLTSATCNSLVALDELGRG 1064
Query: 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGV 1178
TSTSDGQAIAESVLEHFVHKV+CRG+FSTHYHRLAVDYKK+ +VSLCHMACQVG GVGGV
Sbjct: 1065 TSTSDGQAIAESVLEHFVHKVRCRGMFSTHYHRLAVDYKKNSKVSLCHMACQVGKGVGGV 1124
Query: 1179 EEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEAIYGKHKKES----EE 1234
EEVTFLYRL PGACPKSYGVNVARLAG+P+ VLQKA AKS E E IYG+H+K S +E
Sbjct: 1125 EEVTFLYRLRPGACPKSYGVNVARLAGLPNSVLQKAAAKSREIEGIYGRHRKGSDDGCDE 1184
Query: 1235 NLPADHCVDHMVVLIQSLLNFTANLSCQKSSEGDGVTCLTELQRQAGLFFAQ 1286
L + + D +V IQSL+N A LS KS + + L++LQ++A +F Q
Sbjct: 1185 RLSSQNSEDDVVFFIQSLINGVAKLSYHKSFKDIHASSLSDLQQRARIFLDQ 1236
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572787|ref|XP_003554547.1| PREDICTED: DNA mismatch repair protein Msh6-1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1696 bits (4392), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 873/1303 (66%), Positives = 1022/1303 (78%), Gaps = 64/1303 (4%)
Query: 1 MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRT 60
MAP +R NGRSPLVN Q QITSFF+KS SPSPSPT+SK NPN + + + +
Sbjct: 1 MAPSRRNTNGRSPLVNQQSQITSFFTKSASPSPSPTLSKTNPNPNPNPNPSPTPATPSPL 60
Query: 61 PSPSPSPTTPSPLQSNPKKSR--LVIGQTPSPPPSTPAAAKSYGEDVLRKRIRVYWPLDK 118
NPK+S+ LVIG + S A+ Y ++++ +RI+VYWPLDK
Sbjct: 61 ---------------NPKRSKPLLVIGASTS---PPSASPSLYFQELIGRRIKVYWPLDK 102
Query: 119 AWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWVQESVSL-LKRLRRD--SFKKV 175
AWYEG VKSFD +KH+V+YDDGE+E LDL KEKIEW+QES S LKRLRR + +K+
Sbjct: 103 AWYEGSVKSFDSLTSKHVVRYDDGEEESLDLSKEKIEWLQESSSKKLKRLRRGVPAVRKM 162
Query: 176 VVEDDEEMENV---EDEISDDRSDSSDDDWNKNVGKEDVSEDEE-VDLVDEQE------N 225
+++DD+E + DD DS+D+DW ED + EE DL DE +
Sbjct: 163 MIDDDDEEVEEEESHKKDDDDDDDSNDEDWGMKAALEDAGDAEEDTDLEDENDVAERAKG 222
Query: 226 KVLRGRKRKSSGV------KKSKSDGNAVNADFKSPIIKPVKIFGSDKLSNGFDNPVMGD 279
K + +KRK SG KKSKS FK +++P + SNG DN + +
Sbjct: 223 KKVETKKRKLSGTEKQEPAKKSKSGVEVGKGAFKLSVLEPT----IKETSNGTDNVAITE 278
Query: 280 VSERFSAREADKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKS 339
+SERF+ REA K FL DRRDAKRRRPGD YD RT+YLPPDFLR+LS+GQKQWWEFKS
Sbjct: 279 ISERFALREAQKLRFLKEDRRDAKRRRPGDENYDSRTIYLPPDFLRSLSDGQKQWWEFKS 338
Query: 340 KHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGY 399
KHMDKV+FFKMGKFYELFEMDAHVGAKELDLQYMKG+QPHCGFPE+NFSMNVEKLARKGY
Sbjct: 339 KHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGDQPHCGFPEKNFSMNVEKLARKGY 398
Query: 400 RVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALT 459
RVLVVEQT+TPEQLELRRKEKGSKDKVV+REIC+VVTKGTLT+GELLSANP+A+YLMALT
Sbjct: 399 RVLVVEQTDTPEQLELRRKEKGSKDKVVRREICSVVTKGTLTDGELLSANPEAAYLMALT 458
Query: 460 ESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANML 519
E +++ ++ ++ +G+C+VDVATSR+ILGQ DDL+CSVLCC+LSE+RPVEI+KPA +L
Sbjct: 459 EHHENHPTEVSEHLYGVCIVDVATSRVILGQFKDDLECSVLCCILSEIRPVEIVKPAKLL 518
Query: 520 SPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQA 579
S ETER +L+HTR+PLVN+LVP+ EFWDA+ TV ++K IY S+N +
Sbjct: 519 SAETERVLLKHTRDPLVNELVPIVEFWDADKTVDQLKRIYGNSNDVSVNNNE-------- 570
Query: 580 EGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFG 639
L CLP +L EL+ TGD LSALGG L+YL+++FLDE LLRFAKFELLPCSGFG
Sbjct: 571 ----LDCLPDVLLELVKTGDDSRSALSALGGALYYLRQAFLDERLLRFAKFELLPCSGFG 626
Query: 640 DMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNS 699
D+A KPYMVLDA ALENLE+FENSR+GDSSGTLYAQLN CVTAFGKRLL+TWLARPL +
Sbjct: 627 DLASKPYMVLDAAALENLEIFENSRNGDSSGTLYAQLNQCVTAFGKRLLKTWLARPLCHV 686
Query: 700 GLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYED 759
++ERQ+AVAGL+GVN P ALEFRKAL +LPDMERLLAR+F+SSEA+GRN+N+VVLYED
Sbjct: 687 ESVKERQEAVAGLKGVNLPSALEFRKALYKLPDMERLLARIFSSSEASGRNANRVVLYED 746
Query: 760 AAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKD 819
A+KKQLQEFI AL GCE M QAC SLG IL + +SRQLHH+LTPGK LP + L HFKD
Sbjct: 747 ASKKQLQEFILALRGCEQMAQACFSLGVILSHVKSRQLHHLLTPGKVLPDVCMDLNHFKD 806
Query: 820 AFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGK 879
AFDWVEANNSGRIIP GVD +YDSACK VKEIE+SL KHLKEQ KLLG TSITYV +GK
Sbjct: 807 AFDWVEANNSGRIIPREGVDTEYDSACKAVKEIESSLLKHLKEQMKLLGSTSITYVNVGK 866
Query: 880 DLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQR 939
D YLLEVPE+L ++PRDYELRSS+KGFFRYW+P+IK L ELS AESEKES LKS LQR
Sbjct: 867 DTYLLEVPENLSKNIPRDYELRSSRKGFFRYWSPDIKVFLRELSHAESEKESLLKSTLQR 926
Query: 940 LIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDS-CSNEEPYISAKS 998
LIG+FCEHH KW+Q+V+ TAELD LISLAIA D+YEGPTCRP + + C+ E PY+ AKS
Sbjct: 927 LIGRFCEHHAKWKQLVSTTAELDVLISLAIAGDYYEGPTCRPSFVGTLCTKEAPYLHAKS 986
Query: 999 LGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058
LGHPVLRSD+LGKG+FVPNDITIGG +ASFILLTGPNMGGKSTLLRQVCL VILAQVGA
Sbjct: 987 LGHPVLRSDTLGKGDFVPNDITIGGSDHASFILLTGPNMGGKSTLLRQVCLTVILAQVGA 1046
Query: 1059 DVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRG 1118
DVPAE F++SPVDRIFVRMGAKD+IMAGQSTFLTELSETA MLSSAT NSLV LDELGRG
Sbjct: 1047 DVPAESFDLSPVDRIFVRMGAKDNIMAGQSTFLTELSETASMLSSATCNSLVALDELGRG 1106
Query: 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGV 1178
T+TSDGQAIAESVLEH V KVQCRGLFSTHYHRLAVDY KDP+V LCHMACQVG+G+ G+
Sbjct: 1107 TATSDGQAIAESVLEHLVRKVQCRGLFSTHYHRLAVDYLKDPKVCLCHMACQVGSGIAGL 1166
Query: 1179 EEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEAIYGKHKKESE-ENLP 1237
+EVTFLYRL+PGACPKSYGVNVAR+AG+P VLQKA AKS EFEA YGK +K S N P
Sbjct: 1167 DEVTFLYRLTPGACPKSYGVNVARIAGLPTSVLQKAAAKSREFEATYGKCRKVSTVTNSP 1226
Query: 1238 ADHCVDHMVVLIQSLLNFTANLSCQKSSEGDGVTCLTELQRQA 1280
+ VD + +IQ +LN A + E V L+ELQ +A
Sbjct: 1227 NKNWVDEIAAIIQ-ILNNAA------TQETICVGSLSELQDKA 1262
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147861780|emb|CAN78918.1| hypothetical protein VITISV_032225 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1686 bits (4365), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 902/1357 (66%), Positives = 1042/1357 (76%), Gaps = 89/1357 (6%)
Query: 1 MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRT 60
MAP +R +NGRSPLVN Q QIT+FFSK++S +P+ S + NP + + +
Sbjct: 1 MAPTRRMSNGRSPLVNQQSQITAFFSKTSSSPSLSPSPSPSPSPVLSKQDLNPKPSPSPS 60
Query: 61 PSPSPSPTTPSPLQSNPKKSRLVIGQTPSPPPSTPA-AAKSYGEDVLRKRIRVYWPLDKA 119
PSPSP+ +P +Q+ +K LVIG + + PSTP +KSYGE+V+ +R++VYWPLDK+
Sbjct: 61 PSPSPTTPSP--VQAKLRKPLLVIGPSKTTSPSTPVTGSKSYGEEVVNRRVKVYWPLDKS 118
Query: 120 WYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWVQESVSLLKRLRRDS-FKKVVVE 178
WY GCVKSFD+ +HLVQYDD ++E LDLGKEKIEWV++ L+RLRR S F+K VV
Sbjct: 119 WYVGCVKSFDELTGEHLVQYDDADEETLDLGKEKIEWVEDKGRSLRRLRRGSVFEKGVVP 178
Query: 179 DDEEMENVEDEISDDRSDSSDDDWNKNVGKEDVSEDEEVDLV-------------DEQEN 225
E NVE+E D DSSD+DW K+ G+E+V +D E + ++
Sbjct: 179 VGEA--NVEEESGGD--DSSDEDWGKSKGREEVEDDSEDVEFEEEEDEEEEVEGPKKGQS 234
Query: 226 KVLRGRKRKSSGV------KKSKSDGNAVNADFKSPIIKPVKIFGSDKLSNGFDNPVMGD 279
K + +KRK+ G K+ KS G A FK ++P+K S K S+ DN + GD
Sbjct: 235 KKVDPKKRKAVGEGTMGSGKRRKSSGGAEKNTFKVSSVEPMKNAESRKASDILDNVLPGD 294
Query: 280 VSERFSAREADKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKS 339
ERF AREA+K FLG +R+DAKRR PGD YDPRTLYLPP+FL+NL+ GQ+QWWEFKS
Sbjct: 295 ALERFGAREAEKLPFLGGERKDAKRRCPGDANYDPRTLYLPPNFLKNLTGGQRQWWEFKS 354
Query: 340 KHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGY 399
+HMDKVIFFKMGKFYELFEMDAH+GAKELDLQYMK P + + +GY
Sbjct: 355 RHMDKVIFFKMGKFYELFEMDAHIGAKELDLQYMKSTSISFMNPFSSRILTGAPWTVQGY 414
Query: 400 RVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALT 459
RVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE+LSANPDASYLMA+T
Sbjct: 415 RVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEMLSANPDASYLMAVT 474
Query: 460 ESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANML 519
ES Q +R FG+CVVDVATSRIILGQ DD +CS LCCLLSELRPVEIIKPAN+L
Sbjct: 475 ES-----CQFEERSFGVCVVDVATSRIILGQFRDDSECSTLCCLLSELRPVEIIKPANLL 529
Query: 520 SPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIY---NRITAE-SLNKADSNVA 575
SPETERA++RHTR+PLVN+LVP+SEFWD++ TV EI+++Y N ++ SLN+A+ +V
Sbjct: 530 SPETERALMRHTRSPLVNELVPISEFWDSKKTVSEIRSVYRCFNDLSVSGSLNEANLSVK 589
Query: 576 NSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPC 635
S E D L LP ILS+L++ G+SGS LSALGGTLFYLK++F+DETLLRFAKFEL P
Sbjct: 590 XSFVEEDPLG-LPDILSKLVNAGESGSLALSALGGTLFYLKQAFMDETLLRFAKFELFPY 648
Query: 636 SGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARP 695
SG D+ KPYMVLDA ALENLE+FENSR GDSSGTLYAQLNHCVTAFGKRLL+TWLARP
Sbjct: 649 SGVSDIFHKPYMVLDAAALENLEIFENSRKGDSSGTLYAQLNHCVTAFGKRLLKTWLARP 708
Query: 696 LYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVV 755
LY+ IRERQDAVAGLRGVN P ALEFRK LSRLPDMERLLAR+FASSEANGRN+NKVV
Sbjct: 709 LYHLDSIRERQDAVAGLRGVNLPSALEFRKELSRLPDMERLLARIFASSEANGRNANKVV 768
Query: 756 LYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPG----------- 804
YEDAAKKQLQEFISAL GCELM QACSSLG ILEN ES LHH+LTPG
Sbjct: 769 FYEDAAKKQLQEFISALRGCELMTQACSSLGVILENVESGLLHHLLTPGTVGFYVNQIQK 828
Query: 805 -------------KGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKE 851
KGLP I S++ HFK+AFDWVEANNSGRIIPH GVD +YDSACK VKE
Sbjct: 829 SCLASYFLIICAGKGLPDIHSVINHFKEAFDWVEANNSGRIIPHEGVDKEYDSACKTVKE 888
Query: 852 IEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYW 911
IE L KHLKEQ+KLLGD SI +VTIGK+ YLLEVPESLRG++PRDYELRSSKKGFFRYW
Sbjct: 889 IELRLKKHLKEQQKLLGDASINFVTIGKEAYLLEVPESLRGNIPRDYELRSSKKGFFRYW 948
Query: 912 TPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATA------------ 959
TPNIKK LGELS AESEKES LKSILQRLI +FCEHH+KWRQ+V++TA
Sbjct: 949 TPNIKKFLGELSHAESEKESKLKSILQRLISRFCEHHDKWRQLVSSTAGSHXFTFXYGIG 1008
Query: 960 --------ELDAL-ISLAIASDFYEGPTCRPVILD-SCSNEEPYISAKSLGHPVLRSDSL 1009
+D + I LAIA+D+YEGPTCRPVI S SNE P +AKSLGHPVLRSDSL
Sbjct: 1009 AWFYGYLYHVDLVPILLAIANDYYEGPTCRPVISGLSNSNEVPCFTAKSLGHPVLRSDSL 1068
Query: 1010 GKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISP 1069
GKG FVPNDITIGG +A FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE FE+SP
Sbjct: 1069 GKGTFVPNDITIGGSDHACFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAESFELSP 1128
Query: 1070 VDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129
VDRIFVRMGAKD+IMAGQSTFLTELSETA ML+SAT NSLV LDELGRGTSTSDGQAIAE
Sbjct: 1129 VDRIFVRMGAKDNIMAGQSTFLTELSETASMLTSATCNSLVALDELGRGTSTSDGQAIAE 1188
Query: 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSP 1189
SVLEHFVHKV+CRG+FSTHYHRLAVDYKK+ +VSLCHMACQVG GVGGVEEVTFLYRL P
Sbjct: 1189 SVLEHFVHKVRCRGMFSTHYHRLAVDYKKNSKVSLCHMACQVGKGVGGVEEVTFLYRLRP 1248
Query: 1190 GACPKSYGVNVARLAG--IPDKVLQKAVAKSTEFEAIYGKHKKES----EENLPADHCVD 1243
GACPKSYGVNVARLAG +P+ VLQKA AKS E E IYG+H+K S +E L + + D
Sbjct: 1249 GACPKSYGVNVARLAGKELPNSVLQKAAAKSREIEGIYGRHRKGSDDGCDERLSSQNSED 1308
Query: 1244 HMVVLIQSLLNFTANLSCQKSSEGDGVTCLTELQRQA 1280
MV IQSL+N A LS +S + + L++LQ++A
Sbjct: 1309 DMVFFIQSLINGVAKLSYHESFKDIHASSLSDLQQRA 1345
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15235223|ref|NP_192116.1| DNA mismatch repair protein Msh6-1 [Arabidopsis thaliana] gi|6226648|sp|O04716.2|MSH6_ARATH RecName: Full=DNA mismatch repair protein MSH6; Short=AtMSH6; AltName: Full=MutS protein homolog 6 gi|3912921|gb|AAC78699.1| G/T DNA mismatch repair enzyme [Arabidopsis thaliana] gi|5763966|emb|CAB53337.1| mismatch repair protein msh6-1 [Arabidopsis thaliana] gi|7268591|emb|CAB80700.1| G/T DNA mismatch repair enzyme [Arabidopsis thaliana] gi|332656719|gb|AEE82119.1| DNA mismatch repair protein Msh6-1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1674 bits (4335), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1345 (64%), Positives = 1025/1345 (76%), Gaps = 78/1345 (5%)
Query: 1 MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNP----------- 49
MAP +RQ +GRSPLVN QRQITSFF KS S S SP+ S + P
Sbjct: 1 MAPSRRQISGRSPLVNQQRQITSFFGKSASSSSSPSPSPSPSLSNKKTPKSNNPNPKSPS 60
Query: 50 ------------NPNPNSNSNRTPSPSPSPTTPSPLQSNPKKSRLVIGQTPSPPPSTPAA 97
NPNP+SN SPSP P TPSP+QS KK LVIGQTPSPP S
Sbjct: 61 PSPSPPKKTPKLNPNPSSNLP-ARSPSPGPDTPSPVQSKFKKPLLVIGQTPSPPQSV--- 116
Query: 98 AKSYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWV 157
+YG++V+ K++RVYWPLDK WY+G V +DK KH+V+Y+DGE+E LDLGKEK EWV
Sbjct: 117 VITYGDEVVGKQVRVYWPLDKKWYDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEKTEWV 176
Query: 158 --QESVSLLKRLRR--DSFKKVVVE--DDEEMENVEDEISDDRSDSSDDDWNKNVGKEDV 211
++S RL+R + +KVV + DD EM NVE++ SD S +D W KNVGKE
Sbjct: 177 VGEKSGDRFNRLKRGASALRKVVTDSDDDVEMGNVEEDKSDGDDSSDED-WGKNVGKEVC 235
Query: 212 -SEDEEVDLVDEQE-----------------NKVLR--GRKRKSS------GVKKSKSDG 245
SE+++V+LVDE E N+V + RKRK+S G KKSK+D
Sbjct: 236 ESEEDDVELVDENEMDEEELVEEKDEETSKVNRVSKTDSRKRKTSEVTKSGGEKKSKTDT 295
Query: 246 NAVNADFKSPIIKPVKIFG-SDKLSNGF-DNPVMGDVSERFSAREADKFHFLGPDRRDAK 303
+ FK+ +++P K G +D++ G DN + GD RF AR+++KF FLG DRRDAK
Sbjct: 296 GTILKGFKASVVEPAKKIGQADRVVKGLEDNVLDGDALARFGARDSEKFRFLGVDRRDAK 355
Query: 304 RRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHV 363
RRRP D YDPRTLYLPPDF++ L+ GQ+QWWEFK+KHMDKV+FFKMGKFYELFEMDAHV
Sbjct: 356 RRRPTDENYDPRTLYLPPDFVKKLTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHV 415
Query: 364 GAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSK 423
GAKELD+QYMKGEQPHCGFPE+NFS+N+EKL RKGYRVLVVEQTETP+QLE RRKE GSK
Sbjct: 416 GAKELDIQYMKGEQPHCGFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSK 475
Query: 424 DKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVAT 483
DKVVKRE+CAVVTKGTLT+GE+L NPDASYLMALTE +S + + + FG+C+VDVAT
Sbjct: 476 DKVVKREVCAVVTKGTLTDGEMLLTNPDASYLMALTEGGESLTNPTAEHNFGVCLVDVAT 535
Query: 484 SRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLS 543
+IILGQ DD DCS L CLLSE+RPVEIIKPA +LS TER I+R TRNPLVN+LVPLS
Sbjct: 536 QKIILGQFKDDQDCSALSCLLSEMRPVEIIKPAKVLSYATERTIVRQTRNPLVNNLVPLS 595
Query: 544 EFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQ 603
EFWD+E T+ E+ IY RI + + + + + GDG + LP +LSEL + +GS
Sbjct: 596 EFWDSEKTIYEVGIIYKRINCQP---SSAYSSEGKILGDGSSFLPKMLSELATEDKNGSL 652
Query: 604 VLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENS 663
LSALGG ++YL+++FLDE+LLRFAKFE LP F ++ +K +MVLDA ALENLE+FENS
Sbjct: 653 ALSALGGAIYYLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENS 712
Query: 664 RSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEF 723
R+G SGTLYAQLN C+TA GKRLL+TWLARPLYN+ LI+ERQDAVA LRG N P++LEF
Sbjct: 713 RNGGYSGTLYAQLNQCITASGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLEF 772
Query: 724 RKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACS 783
RK+LSRLPDMERL+AR+F+S EA+GRN +KVVLYED AKKQ+QEFIS L GCE M +ACS
Sbjct: 773 RKSLSRLPDMERLIARMFSSIEASGRNGDKVVLYEDTAKKQVQEFISTLRGCETMAEACS 832
Query: 784 SLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYD 843
SL AIL++ SR+L H+LTPG+ LP I S +K+FKDAFDWVEA+NSGR+IPH G D +YD
Sbjct: 833 SLRAILKHDTSRRLLHLLTPGQSLPNISSSIKYFKDAFDWVEAHNSGRVIPHEGADEEYD 892
Query: 844 SACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSS 903
ACK V+E E+SL KHLKEQRKLLGD SI YVT+GKD YLLEVPESL GSVP DYEL SS
Sbjct: 893 CACKTVEEFESSLKKHLKEQRKLLGDASINYVTVGKDEYLLEVPESLSGSVPHDYELCSS 952
Query: 904 KKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDA 963
KKG RYWTP IKKLL ELSQA+SEKESALKSI QRLIG+FCEH KWRQ+V+ATAELD
Sbjct: 953 KKGVSRYWTPTIKKLLKELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATAELDV 1012
Query: 964 LISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGG 1023
LISLA ASD YEG CRPVI S S+ P++SA LGHPVLR DSLG+G FVPN++ IGG
Sbjct: 1013 LISLAFASDSYEGVRCRPVISGSTSDGVPHLSATGLGHPVLRGDSLGRGSFVPNNVKIGG 1072
Query: 1024 HGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHI 1083
ASFILLTGPNMGGKSTLLRQVCLAVILAQ+GADVPAE FE+SPVD+I VRMGAKDHI
Sbjct: 1073 AEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDKICVRMGAKDHI 1132
Query: 1084 MAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRG 1143
MAGQSTFLTELSETA+ML+SATRNSLVVLDELGRGT+TSDGQAIAESVLEHF+ KVQCRG
Sbjct: 1133 MAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEKVQCRG 1192
Query: 1144 LFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARL 1203
FSTHYHRL+VDY+ +P+VSLCHMACQ+G G+GGVEEVTFLYRL+PGACPKSYGVNVARL
Sbjct: 1193 FFSTHYHRLSVDYQTNPKVSLCHMACQIGEGIGGVEEVTFLYRLTPGACPKSYGVNVARL 1252
Query: 1204 AGIPDKVLQKAVAKSTEFEAIYGKHKKESEENLPADHCVDHMVVLIQSLLNFTANLSCQK 1263
AG+PD VLQ+AV KS EFEA+YGK+ +++ DH + M+ I S + ++ S K
Sbjct: 1253 AGLPDYVLQRAVIKSQEFEALYGKNHRKT------DHKLAAMIKQIISSVASDSDYSASK 1306
Query: 1264 SSEGDGVTCLTELQRQAGLFFAQQN 1288
S L EL A F N
Sbjct: 1307 DS-------LCELHSMANTFLRLTN 1324
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297814117|ref|XP_002874942.1| hypothetical protein ARALYDRAFT_912022 [Arabidopsis lyrata subsp. lyrata] gi|297320779|gb|EFH51201.1| hypothetical protein ARALYDRAFT_912022 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1667 bits (4316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1347 (64%), Positives = 1027/1347 (76%), Gaps = 80/1347 (5%)
Query: 1 MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNP----------- 49
MAP +RQ +GRSPLVN QRQITSFF KS S S SP+ S + P
Sbjct: 1 MAPSRRQISGRSPLVNQQRQITSFFGKSASSSSSPSPSPSPSLSNKKTPKPNPNPNSPSP 60
Query: 50 -----------NPNPNSNSNRTPSPSPSPTTPSPLQSNPKKSRLVIGQTPSPPPSTPAAA 98
NPNP+S+ SPSP P TPSP+QS KK LVIGQTPSPP S A
Sbjct: 61 SPSPPKKTPKLNPNPSSDPP-ARSPSPGPATPSPVQSKFKKPLLVIGQTPSPPQS---AV 116
Query: 99 KSYGEDVLRKRIRVYWPLDKAWYEGCVKSFDK-ECNKHLVQYDDGEDELLDLGKEKIEWV 157
+YG++V+ K++RVYWPLDK WY+G V +DK EC KH+V+Y+DGE+E LDLGKEKIEWV
Sbjct: 117 ITYGDEVVGKQVRVYWPLDKKWYDGSVTFYDKCEC-KHVVEYEDGEEESLDLGKEKIEWV 175
Query: 158 --QESVSLLKRLRR--DSFKKVVVEDDE--EMENVEDEISDDRSDSSD--DDWNKNVGKE 209
+S KRLRR + +KVV +DD+ EM NVE+E D +DW KNVGKE
Sbjct: 176 VGDKSGDRFKRLRRGASALRKVVTDDDDDVEMGNVEEEKGDKSDGDDSSDEDWGKNVGKE 235
Query: 210 ------------DVSEDEEVDLVDEQENKVLRG--------RKRKSS------GVKKSKS 243
D +E +E +LV+E++ + +G RKRK+S G KKS++
Sbjct: 236 LCESEEEDVELVDENEMDEDELVEEKDEETPKGSRVSKTDFRKRKTSEVTKSGGEKKSRT 295
Query: 244 DGNAVNADFKSPIIKP-VKIFGSDKL-SNGFDNPVMGDVSERFSAREADKFHFLGPDRRD 301
D + + FK+ +++P +KI +D++ N DN + GD RF ARE++KF FLG DRRD
Sbjct: 296 DKDTILKGFKASVVEPPMKIGEADRVVKNLEDNILDGDALARFGARESEKFRFLGVDRRD 355
Query: 302 AKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDA 361
AKRRR D YDPRTLYLPPDF++ L+ GQ+QWWEFKSKHMDKV+FFKMGKFYELFEMDA
Sbjct: 356 AKRRRSTDENYDPRTLYLPPDFVKKLTGGQRQWWEFKSKHMDKVVFFKMGKFYELFEMDA 415
Query: 362 HVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKG 421
HVGAKELD+QYMKGEQPHCGFPE+NFS+N+EKL RKGYRVLVVEQTETP+QLE RRKE G
Sbjct: 416 HVGAKELDIQYMKGEQPHCGFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETG 475
Query: 422 SKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDV 481
SKDKVVKREICAVVTKGTLT+GE+L NPDASY+MALTE + Q+ + FG+C+VDV
Sbjct: 476 SKDKVVKREICAVVTKGTLTDGEMLLTNPDASYIMALTEGGECLTDQTAEHNFGVCLVDV 535
Query: 482 ATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVP 541
AT +I+LGQ DD DCS L CLLSE+RPVEIIKPA +LS TER I+R TRNPLVN+LVP
Sbjct: 536 ATKKIMLGQFKDDQDCSALSCLLSEMRPVEIIKPAKVLSSATERTIVRQTRNPLVNNLVP 595
Query: 542 LSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSG 601
SEFWD+E T+ E+ Y RI S + + + + GDG + LP ILSEL + +G
Sbjct: 596 FSEFWDSEKTIHEVGIFYKRI---SCQPSSAYSSEGKIPGDGSSFLPKILSELATEDKNG 652
Query: 602 SQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFE 661
S LSALGG ++YL+++FLDE+LLRFAKFE LPC F ++ +K +MVLDA ALENLE+FE
Sbjct: 653 SLALSALGGAIYYLRQAFLDESLLRFAKFESLPCCDFSNVNEKQHMVLDAAALENLEIFE 712
Query: 662 NSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFAL 721
NSR+G SGTLYAQLN CVTA GKRLL+TWLARPLYN LI+ERQDAVA LRG N P++L
Sbjct: 713 NSRNGGYSGTLYAQLNQCVTASGKRLLKTWLARPLYNPELIKERQDAVAILRGENLPYSL 772
Query: 722 EFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQA 781
EFRKALSRLPDMERL+AR+F+S EA+GRN +KVVLYED AKK++QEFIS L GCE M +A
Sbjct: 773 EFRKALSRLPDMERLIARMFSSIEASGRNGDKVVLYEDTAKKEVQEFISTLRGCETMAEA 832
Query: 782 CSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMD 841
CSSL AIL++ +SR+L H+L+PG+ LP I S +K+FKDAFDWVEA+NSGR+IPH G D +
Sbjct: 833 CSSLRAILKHDKSRRLLHLLSPGQILPNISSSIKYFKDAFDWVEAHNSGRVIPHEGADEE 892
Query: 842 YDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELR 901
+D ACK V+E E++L KHLKEQRKLLGD SI YVT+GKD YLLEVPE L GSVP DYEL
Sbjct: 893 FDCACKTVEEFESNLKKHLKEQRKLLGDPSINYVTVGKDEYLLEVPEILSGSVPHDYELC 952
Query: 902 SSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAEL 961
SSKKG RYWTP IKKLL ELSQA+SEKESALKSI QRLIG+FCEH KWRQ+V+ATAEL
Sbjct: 953 SSKKGVSRYWTPTIKKLLKELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATAEL 1012
Query: 962 DALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITI 1021
D LISLA ASD YEG CRPVI S S++ P++SA LGHPVLR D+LG+G FVPN++ I
Sbjct: 1013 DVLISLAFASDSYEGVRCRPVISGSTSDDVPHLSATGLGHPVLRGDTLGRGSFVPNNVKI 1072
Query: 1022 GGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKD 1081
GG ASFILLTGPNMGGKSTLLRQVCLAVILAQ+GADVPAE FE+SPVDRI VRMGAKD
Sbjct: 1073 GGSEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDRICVRMGAKD 1132
Query: 1082 HIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQC 1141
HIMAGQSTFLTELSETA+ML+SATRNSLVVLDELGRGT+TSDGQAIAESVLEHF+ KVQC
Sbjct: 1133 HIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIDKVQC 1192
Query: 1142 RGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVA 1201
RGLFSTHYHRL+VDY+ +P+VSLCHMACQVG G+GGVEEVTFLYRL+PGACPKSYGVNVA
Sbjct: 1193 RGLFSTHYHRLSVDYQTNPKVSLCHMACQVGEGIGGVEEVTFLYRLTPGACPKSYGVNVA 1252
Query: 1202 RLAGIPDKVLQKAVAKSTEFEAIYGKHKKESEENLPADHCVDHMVVLIQSLLNFTANLSC 1261
RLAG+PD VLQ+AV KS EFEA+YGK ++ + DH + M+ I S + ++ S
Sbjct: 1253 RLAGLPDYVLQRAVIKSQEFEALYGKKQRTT------DHKMAAMIKQIISSVASDSDYSA 1306
Query: 1262 QKSSEGDGVTCLTELQRQAGLFFAQQN 1288
K S L+EL A F N
Sbjct: 1307 SKDS-------LSELHSMANTFLRLTN 1326
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334186287|ref|NP_001190656.1| DNA mismatch repair protein Msh6-1 [Arabidopsis thaliana] gi|332656720|gb|AEE82120.1| DNA mismatch repair protein Msh6-1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1662 bits (4305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 863/1345 (64%), Positives = 1022/1345 (75%), Gaps = 81/1345 (6%)
Query: 1 MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNP----------- 49
MAP +RQ +GRSPLVN QRQITSFF KS S S SP+ S + P
Sbjct: 1 MAPSRRQISGRSPLVNQQRQITSFFGKSASSSSSPSPSPSPSLSNKKTPKSNNPNPKSPS 60
Query: 50 ------------NPNPNSNSNRTPSPSPSPTTPSPLQSNPKKSRLVIGQTPSPPPSTPAA 97
NPNP+SN SPSP P TPSP+QS KK LVIGQTPSPP S
Sbjct: 61 PSPSPPKKTPKLNPNPSSNLP-ARSPSPGPDTPSPVQSKFKKPLLVIGQTPSPPQSV--- 116
Query: 98 AKSYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWV 157
+YG++V+ K++RVYWPLDK WY+G V +DK KH+V+Y+DGE+E LDLGKEK EWV
Sbjct: 117 VITYGDEVVGKQVRVYWPLDKKWYDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEKTEWV 176
Query: 158 --QESVSLLKRLRR--DSFKKVVVE--DDEEMENVEDEISDDRSDSSDDDWNKNVGKEDV 211
++S RL+R + +KVV + DD EM NVE++ SD S +D W KNVGKE
Sbjct: 177 VGEKSGDRFNRLKRGASALRKVVTDSDDDVEMGNVEEDKSDGDDSSDED-WGKNVGKEVC 235
Query: 212 -SEDEEVDLVDEQE-----------------NKVLR--GRKRKSS------GVKKSKSDG 245
SE+++V+LVDE E N+V + RKRK+S G KKSK+D
Sbjct: 236 ESEEDDVELVDENEMDEEELVEEKDEETSKVNRVSKTDSRKRKTSEVTKSGGEKKSKTDT 295
Query: 246 NAVNADFKSPIIKPVKIFG-SDKLSNGF-DNPVMGDVSERFSAREADKFHFLGPDRRDAK 303
+ FK+ +++P K G +D++ G DN + GD RF AR+++KF FLG D AK
Sbjct: 296 GTILKGFKASVVEPAKKIGQADRVVKGLEDNVLDGDALARFGARDSEKFRFLGVD---AK 352
Query: 304 RRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHV 363
RRRP D YDPRTLYLPPDF++ L+ GQ+QWWEFK+KHMDKV+FFKMGKFYELFEMDAHV
Sbjct: 353 RRRPTDENYDPRTLYLPPDFVKKLTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHV 412
Query: 364 GAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSK 423
GAKELD+QYMKGEQPHCGFPE+NFS+N+EKL RKGYRVLVVEQTETP+QLE RRKE GSK
Sbjct: 413 GAKELDIQYMKGEQPHCGFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSK 472
Query: 424 DKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVAT 483
DKVVKRE+CAVVTKGTLT+GE+L NPDASYLMALTE +S + + + FG+C+VDVAT
Sbjct: 473 DKVVKREVCAVVTKGTLTDGEMLLTNPDASYLMALTEGGESLTNPTAEHNFGVCLVDVAT 532
Query: 484 SRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLS 543
+IILGQ DD DCS L CLLSE+RPVEIIKPA +LS TER I+R TRNPLVN+LVPLS
Sbjct: 533 QKIILGQFKDDQDCSALSCLLSEMRPVEIIKPAKVLSYATERTIVRQTRNPLVNNLVPLS 592
Query: 544 EFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQ 603
EFWD+E T+ E+ IY RI + + + + + GDG + LP +LSEL + +GS
Sbjct: 593 EFWDSEKTIYEVGIIYKRINCQP---SSAYSSEGKILGDGSSFLPKMLSELATEDKNGSL 649
Query: 604 VLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENS 663
LSALGG ++YL+++FLDE+LLRFAKFE LP F ++ +K +MVLDA ALENLE+FENS
Sbjct: 650 ALSALGGAIYYLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENS 709
Query: 664 RSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEF 723
R+G SGTLYAQLN C+TA GKRLL+TWLARPLYN+ LI+ERQDAVA LRG N P++LEF
Sbjct: 710 RNGGYSGTLYAQLNQCITASGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLEF 769
Query: 724 RKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACS 783
RK+LSRLPDMERL+AR+F+S EA+GRN +KVVLYED AKKQ+QEFIS L GCE M +ACS
Sbjct: 770 RKSLSRLPDMERLIARMFSSIEASGRNGDKVVLYEDTAKKQVQEFISTLRGCETMAEACS 829
Query: 784 SLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYD 843
SL AIL++ SR+L H+LTPG+ LP I S +K+FKDAFDWVEA+NSGR+IPH G D +YD
Sbjct: 830 SLRAILKHDTSRRLLHLLTPGQSLPNISSSIKYFKDAFDWVEAHNSGRVIPHEGADEEYD 889
Query: 844 SACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSS 903
ACK V+E E+SL KHLKEQRKLLGD SI YVT+GKD YLLEVPESL GSVP DYEL SS
Sbjct: 890 CACKTVEEFESSLKKHLKEQRKLLGDASINYVTVGKDEYLLEVPESLSGSVPHDYELCSS 949
Query: 904 KKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDA 963
KKG RYWTP IKKLL ELSQA+SEKESALKSI QRLIG+FCEH KWRQ+V+ATAELD
Sbjct: 950 KKGVSRYWTPTIKKLLKELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATAELDV 1009
Query: 964 LISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGG 1023
LISLA ASD YEG CRPVI S S+ P++SA LGHPVLR DSLG+G FVPN++ IGG
Sbjct: 1010 LISLAFASDSYEGVRCRPVISGSTSDGVPHLSATGLGHPVLRGDSLGRGSFVPNNVKIGG 1069
Query: 1024 HGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHI 1083
ASFILLTGPNMGGKSTLLRQVCLAVILAQ+GADVPAE FE+SPVD+I VRMGAKDHI
Sbjct: 1070 AEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDKICVRMGAKDHI 1129
Query: 1084 MAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRG 1143
MAGQSTFLTELSETA+ML+SATRNSLVVLDELGRGT+TSDGQAIAESVLEHF+ KVQCRG
Sbjct: 1130 MAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEKVQCRG 1189
Query: 1144 LFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARL 1203
FSTHYHRL+VDY+ +P+VSLCHMACQ+G G+GGVEEVTFLYRL+PGACPKSYGVNVARL
Sbjct: 1190 FFSTHYHRLSVDYQTNPKVSLCHMACQIGEGIGGVEEVTFLYRLTPGACPKSYGVNVARL 1249
Query: 1204 AGIPDKVLQKAVAKSTEFEAIYGKHKKESEENLPADHCVDHMVVLIQSLLNFTANLSCQK 1263
AG+PD VLQ+AV KS EFEA+YGK+ +++ DH + M+ I S + ++ S K
Sbjct: 1250 AGLPDYVLQRAVIKSQEFEALYGKNHRKT------DHKLAAMIKQIISSVASDSDYSASK 1303
Query: 1264 SSEGDGVTCLTELQRQAGLFFAQQN 1288
S L EL A F N
Sbjct: 1304 DS-------LCELHSMANTFLRLTN 1321
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436747|ref|XP_004136154.1| PREDICTED: DNA mismatch repair protein MSH6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1647 bits (4266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 857/1312 (65%), Positives = 1011/1312 (77%), Gaps = 56/1312 (4%)
Query: 13 PLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRTPSPSPSPTTPSP 72
PLVN QRQITSFF+K PT N +S S+ TPSPSP+ +P
Sbjct: 13 PLVNQQRQITSFFTKK------PT---------GDNSAARTHSISSPTPSPSPNINSPPS 57
Query: 73 LQSNPKKSRLVIG--------QTPSPPPSTPAAAKSYGEDVLRKRIRVYWPLDKAWYEGC 124
+QS KK LVIG +P A KS+G+ V+ K+I+VYWPLDK WYEG
Sbjct: 58 VQSKRKKPLLVIGGGAPPFSSSSPGSSSLPDAEEKSHGDGVIGKKIKVYWPLDKTWYEGR 117
Query: 125 VKSFDKECNKHLVQYDDGEDELLDLGKEKIEWVQESVSLLKRLRRDSFKKVVVEDDEEME 184
VK FD++ KHLVQYDD E+ELL LG EKIEWV+ES KRLRR S V E+M+
Sbjct: 118 VKMFDEKAGKHLVQYDDAEEELLVLGNEKIEWVEESAKKFKRLRRGSSPPVSAAVLEDMD 177
Query: 185 NVEDEISDDRSDSSD-DDWNKNVGK----------------EDVSEDEEVDLVDEQENKV 227
++ D D SD S +DW KNV ED SE++ V ++
Sbjct: 178 DLNDLSDGDGSDDSRDEDWGKNVENEVSEEEDVDLVEENEDEDGSEEDGVGKSRRKQGGQ 237
Query: 228 LRGRKRKSSGVKKSKSDGNAVNADFKSPIIKPVKIFG--------SDKLSNGFDNPVMGD 279
+ +KRK S KK + + + S +++ S + G N + D
Sbjct: 238 VESKKRKMSNGKKVEVAPKKIKSSGGSVTSGGLQLSSMETKIKSESTSVLKGI-NEIASD 296
Query: 280 VSERFSAREADKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKS 339
ERF++REA+KF FL DR+DA +R PGD YDP+TL+LPP F++NLS+GQ+QWWEFKS
Sbjct: 297 ALERFNSREAEKFRFLKEDRKDANKRCPGDPDYDPKTLHLPPYFVKNLSDGQRQWWEFKS 356
Query: 340 KHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGY 399
KHMDKV+FFKMGKFYELFEMDAH+GAKELDLQYMKG+QPHCGFPERNFS+NVEKLARKGY
Sbjct: 357 KHMDKVLFFKMGKFYELFEMDAHIGAKELDLQYMKGDQPHCGFPERNFSLNVEKLARKGY 416
Query: 400 RVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALT 459
RVLV+EQTETPEQLE RRKEKGSKDKVVKREICAVVTKGTLTEGE+LS NPDASYLMA+T
Sbjct: 417 RVLVIEQTETPEQLERRRKEKGSKDKVVKREICAVVTKGTLTEGEMLSLNPDASYLMAVT 476
Query: 460 ESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANML 519
E+ +Q +R G+CVVDVATSR+ILGQ DD +CS LCCLLSELRPVEIIKPA +L
Sbjct: 477 ENFYGLENQQ-ERILGVCVVDVATSRVILGQFGDDSECSALCCLLSELRPVEIIKPAKLL 535
Query: 520 SPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIY----NRITAESLNKADSNVA 575
SPETER +L HTRNPLVN+LVPL EFWDAE TV E+K ++ NR + S ++A
Sbjct: 536 SPETERVLLTHTRNPLVNELVPLLEFWDAEKTVQEVKRLFKGIANRSVSGSSSEASLLND 595
Query: 576 NSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPC 635
N+ E DGL+ +P +LSEL++ ++GS LSALGG LFYLK++FLDETLLRFAKFELLPC
Sbjct: 596 NAARENDGLSYMPDVLSELVTADENGSWALSALGGILFYLKQAFLDETLLRFAKFELLPC 655
Query: 636 SGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARP 695
SGF D+ KPYMVLDA ALENLE+FENSR+GDSSGTLY+QLNHCVTAFGKRLL+TWLARP
Sbjct: 656 SGFSDVISKPYMVLDAAALENLEIFENSRNGDSSGTLYSQLNHCVTAFGKRLLKTWLARP 715
Query: 696 LYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVV 755
LY+ I RQ AVA LRG N F+LEFRKALS+LPDMERLLAR+F++SEANGRN+ VV
Sbjct: 716 LYHVESIEARQGAVASLRGDNLSFSLEFRKALSKLPDMERLLARIFSNSEANGRNAINVV 775
Query: 756 LYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILK 815
LYEDAAKKQLQEFISAL GCELM QACSSL IL N +SR+L +LTPG+GLP + S+L
Sbjct: 776 LYEDAAKKQLQEFISALRGCELMLQACSSLRVILPNVKSRRLDCLLTPGEGLPDLHSVLS 835
Query: 816 HFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYV 875
HFKDAFDWVEAN+SGR+IP GVD++YDSAC+K++EI++SLTKHLKEQRKLLGDTSITYV
Sbjct: 836 HFKDAFDWVEANSSGRVIPREGVDVEYDSACEKIREIQSSLTKHLKEQRKLLGDTSITYV 895
Query: 876 TIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKS 935
T+GK+ +LLEVPESL+G++P+ YELRSSKKGFFRYWTPNIKKLL ELS AESEKES+LKS
Sbjct: 896 TVGKETHLLEVPESLQGNIPQTYELRSSKKGFFRYWTPNIKKLLAELSLAESEKESSLKS 955
Query: 936 ILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDS-CSNEEPYI 994
ILQRLI +FCEHH +WRQ+V+A AELD LISLAIASD+YEG TC+P+ S C NE P
Sbjct: 956 ILQRLIRKFCEHHLQWRQLVSAIAELDVLISLAIASDYYEGYTCQPLFSKSQCQNEVPRF 1015
Query: 995 SAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA 1054
+AK+LGHP+LRSDSLG+G FVPNDITIGG G A+FILLTGPNMGGKSTLLRQVCL+VILA
Sbjct: 1016 TAKNLGHPILRSDSLGEGTFVPNDITIGGSG-ANFILLTGPNMGGKSTLLRQVCLSVILA 1074
Query: 1055 QVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDE 1114
Q+GADVPAE FE++PVDRIFVRMGA+D IM+GQSTFLTELSETALMLSSATRNS+V+LDE
Sbjct: 1075 QIGADVPAESFELAPVDRIFVRMGARDQIMSGQSTFLTELSETALMLSSATRNSVVILDE 1134
Query: 1115 LGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174
LGRGT+TSDGQAIAESVLEHFV KVQCRG+FSTHYHRLA+ Y KDPRVSL HMAC+VG G
Sbjct: 1135 LGRGTATSDGQAIAESVLEHFVSKVQCRGVFSTHYHRLALAYHKDPRVSLHHMACRVGEG 1194
Query: 1175 VGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEAIYGKHKKESEE 1234
G+EEVTFLYRL+PG CPKSYGVNVARLAG+P+ VL +A AKS EFE YG +ESE
Sbjct: 1195 NNGLEEVTFLYRLTPGTCPKSYGVNVARLAGLPNCVLTEAAAKSMEFEVTYGMAGEESEV 1254
Query: 1235 NLPADHCVDHMVVLIQSLLNFTANLSCQKSSEGDGVTCLTELQRQAGLFFAQ 1286
+L VD LIQ L++ + + C +E +G+ L +LQ+QA + Q
Sbjct: 1255 DLCNQTWVDDTTTLIQKLISLESAVRCNDETEKNGIGSLKQLQQQARILVQQ 1306
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O04716 | MSH6_ARATH | No assigned EC number | 0.6438 | 0.9836 | 0.9569 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00140670 | hypothetical protein (1288 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.00120511 | hypothetical protein (944 aa) | • | • | • | • | • | 0.798 | |||
 | gw1.XIX.1944.1 | annotation not avaliable (727 aa) | • | • | • | • | 0.688 | ||||
 | gw1.V.2541.1 | hypothetical protein (1081 aa) | • | • | • | 0.597 | |||||
 | estExt_Genewise1_v1.C_LG_I1046 | proliferating cell nuclear antigen (PCNA); This protein is an auxiliary protein of DNA polymera [...] (268 aa) | • | • | • | 0.527 | |||||
 | estExt_Genewise1_v1.C_LG_IX3930 | proliferating cell nuclear antigen (PCNA); This protein is an auxiliary protein of DNA polymera [...] (265 aa) | • | • | • | 0.519 | |||||
 | fgenesh4_pg.C_scaffold_15300000001 | Predicted protein (342 aa) | • | 0.502 | |||||||
 | eugene3.00660007 | hypothetical protein (2222 aa) | • | • | • | 0.436 | |||||
 | eugene3.07100002 | annotation not avaliable (68 aa) | • | 0.431 | |||||||
 | eugene3.00140751 | SubName- Full=Putative uncharacterized protein; (915 aa) | • | • | • | 0.423 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1288 | |||
| COG0249 | 843 | COG0249, MutS, Mismatch repair ATPase (MutS family | 0.0 | |
| PRK05399 | 854 | PRK05399, PRK05399, DNA mismatch repair protein Mu | 1e-157 | |
| TIGR01070 | 840 | TIGR01070, mutS1, DNA mismatch repair protein MutS | 1e-119 | |
| cd03286 | 218 | cd03286, ABC_MSH6_euk, ATP-binding cassette domain | 1e-100 | |
| pfam00488 | 235 | pfam00488, MutS_V, MutS domain V | 3e-96 | |
| smart00534 | 185 | smart00534, MUTSac, ATPase domain of DNA mismatch | 2e-90 | |
| cd03284 | 216 | cd03284, ABC_MutS1, ATP-binding cassette domain of | 2e-78 | |
| cd03243 | 202 | cd03243, ABC_MutS_homologs, ATP-binding cassette d | 1e-75 | |
| cd03285 | 222 | cd03285, ABC_MSH2_euk, ATP-binding cassette domain | 2e-67 | |
| cd03287 | 222 | cd03287, ABC_MSH3_euk, ATP-binding cassette domain | 9e-64 | |
| smart00533 | 308 | smart00533, MUTSd, DNA-binding domain of DNA misma | 2e-61 | |
| pfam05192 | 290 | pfam05192, MutS_III, MutS domain III | 3e-55 | |
| cd03281 | 213 | cd03281, ABC_MSH5_euk, ATP-binding cassette domain | 3e-52 | |
| cd03282 | 204 | cd03282, ABC_MSH4_euk, ATP-binding cassette domain | 1e-42 | |
| pfam01624 | 113 | pfam01624, MutS_I, MutS domain I | 1e-39 | |
| cd03283 | 199 | cd03283, ABC_MutS-like, ATP-binding cassette domai | 1e-37 | |
| TIGR01069 | 771 | TIGR01069, mutS2, MutS2 family protein | 3e-32 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 8e-30 | |
| cd03280 | 200 | cd03280, ABC_MutS2, ATP-binding cassette domain of | 1e-29 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 1e-25 | |
| COG1193 | 753 | COG1193, COG1193, Mismatch repair ATPase (MutS fam | 2e-21 | |
| pfam05190 | 92 | pfam05190, MutS_IV, MutS family domain IV | 2e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-10 | |
| pfam05188 | 133 | pfam05188, MutS_II, MutS domain II | 3e-04 |
| >gnl|CDD|223327 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 573 bits (1478), Expect = 0.0
Identities = 289/898 (32%), Positives = 426/898 (47%), Gaps = 116/898 (12%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDL-QYMKGEQPHCGFPERNFSMN 390
+Q+ E K+++ D ++FF+MG FYELF DA + A+ LD+ +G P G P
Sbjct: 11 QQYLEIKAQYPDTLLFFRMGDFYELFFEDAKIAARLLDITLTKRGNIPMAGVPYHALDYY 70
Query: 391 VEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANP 450
+ KL GY+V + EQ E P VV+R++ VVT GTLT+ LLS
Sbjct: 71 LAKLIELGYKVAICEQLEDP----------AEAKGVVERKVVRVVTPGTLTDEALLSDR- 119
Query: 451 DASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSEL--- 507
+ +YL AL + D G+ +D++T + + + LLSEL
Sbjct: 120 ENNYLAAL--------AIDRDGKVGLAFIDLSTGEFFVSEFEREK-------LLSELKRL 164
Query: 508 RPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESL 567
+P E++ ++LS L P S F D + + +
Sbjct: 165 QPKELLLSESLLSSTLAEIQKGLFVVRL-----PASFF-DEDDAEEILSEYFG------- 211
Query: 568 NKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETL-LR 626
LIST + LSA G L YLK + ++
Sbjct: 212 ------------------VRDLDGFGLISTPLA----LSAAGALLSYLKDTQKTFLPHIQ 249
Query: 627 FAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKR 686
+ L + YMVLDA NLE+F N R G+L+ L+ VT G R
Sbjct: 250 IIQRYDL----------EDYMVLDAATRRNLELFSNLRGNGKKGSLFWLLDRTVTPMGSR 299
Query: 687 LLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE-FRKALSRLPDMERLLARLFASSE 745
LL+ WL +PL + I ER DAV L + P E R+ L ++PD+ERLL+RL
Sbjct: 300 LLKRWLLQPLLDKEEIEERLDAVEEL--KDNPELREKLREMLKKVPDLERLLSRL----- 352
Query: 746 ANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGK 805
+ GR S + +L +L++ + + E+ L +L +
Sbjct: 353 SLGRASPRDLL-------RLRDSLEKIP--EIFKLL-------SSLKSESDLLLLLEDIE 396
Query: 806 GLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRK 865
L + +L+ + A + I G +++ D + + + K E+R+
Sbjct: 397 SLDYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWIAKLELEERE 456
Query: 866 LLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQA 925
G S+ Y +EV +S VP DY R + K R+ TP +K+L +L A
Sbjct: 457 RTGIKSLKIKYNKVYGYYIEVTKSNAKLVPDDYIRRQTLKNAERFTTPELKELEEKLLDA 516
Query: 926 ESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILD 985
E + + + L + H N+ + + A AELD L SLA + RP
Sbjct: 517 EEKILALEYELFDELREKILAHINELQALAKALAELDVLSSLAEIAAEQ--NYVRPEF-- 572
Query: 986 SCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLR 1045
+ + K HPV+ +++ FVPNDI + G+ IL+TGPNMGGKST LR
Sbjct: 573 ---VDSNDLEIKEGRHPVV--EAVLDNGFVPNDIDLSGNRR--IILITGPNMGGKSTYLR 625
Query: 1046 QVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSAT 1105
QV L VILAQ+G+ VPAE I VDRIF R+GA D + +G+STF+ E+ ETA +L +AT
Sbjct: 626 QVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNAT 685
Query: 1106 RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLC 1165
SLV+LDE+GRGTST DG AIA +VLE+ K+ CR LF+THYH L +K P+V
Sbjct: 686 ERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLFATHYHELTELEEKLPQVKNY 745
Query: 1166 HMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEA 1223
HM+ G ++TFLY++ PG KSYG++VA+LAG+P++V+++A E E
Sbjct: 746 HMSAVEEGG-----DITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERAREILAELEK 798
|
Length = 843 |
| >gnl|CDD|235444 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Score = 493 bits (1271), Expect = e-157
Identities = 290/942 (30%), Positives = 421/942 (44%), Gaps = 182/942 (19%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDL-----QYMKGEQ-PHCGFPER 385
+Q+ E K+++ D ++FF+MG FYELF DA ++ LD+ GE P G P
Sbjct: 13 QQYLEIKAQYPDALLFFRMGDFYELFFEDAKKASRLLDITLTKRGKSAGEPIPMAGVPYH 72
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ KL +KGY+V + EQ E P KG VKRE+ +VT GT+T+ L
Sbjct: 73 AAEGYLAKLVKKGYKVAICEQVEDPAT------AKG----PVKREVVRIVTPGTVTDEAL 122
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L +YL A+ + +G+ +D++T + + LD L L+
Sbjct: 123 LDEK-QNNYLAAIAQD---------GGGYGLAYLDLSTGEFRVTE----LDEEELLAELA 168
Query: 506 ELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAE 565
L P EI+ + + L R L P EF D +T + + + +
Sbjct: 169 RLNPAEIL-----VPEDFSEDELLLLRRGLR--RRPPWEF-DLDTAEKRLLEQFGVASLD 220
Query: 566 SLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLK---KSFLDE 622
G+ L + A G L YLK K L
Sbjct: 221 GF---------------------GVDLPL---------AIRAAGALLQYLKETQKRSLP- 249
Query: 623 TLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTA 682
LR K D Y++LDA NLE+ EN R G +L + L+ VTA
Sbjct: 250 -HLRSPKRY-----EESD-----YLILDAATRRNLELTENLR-GGRKNSLLSVLDRTVTA 297
Query: 683 FGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE-FRKALSRLPDMERLLARLF 741
G RLLR WL RPL + I R DAV L + P E R+ L + D+ERLL+R+
Sbjct: 298 MGGRLLRRWLHRPLRDREAIEARLDAVEEL--LEDPLLREDLRELLKGVYDLERLLSRIA 355
Query: 742 ASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHIL 801
AN R + + E A L +L +S L +
Sbjct: 356 LGR-ANPR-----------------DLAALRDSLE----ALPELKELLAELDSPLLAELA 393
Query: 802 TPGKGLPAIVSILKH---------------FKDAFD-----WVE-ANNSGRIIPHGGVDM 840
L + +L+ D +D ++N + ++
Sbjct: 394 EQLDPLEELADLLERAIVEEPPLLIRDGGVIADGYDAELDELRALSDNGKDWL----AEL 449
Query: 841 DYDSACKKVKEIEASLTKHLKEQR-KLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYE 899
+ +E E + LK K+ G Y +EV ++ VP DY
Sbjct: 450 -------EARERERTGISSLKVGYNKVFG-------------YYIEVTKANLDKVPEDYI 489
Query: 900 LRSSKKGFFRYWTPNIKKLLGELSQAESEKESAL-KSILQRLIGQFCEHHNKWRQMVAAT 958
R + K RY TP +K+L ++ AE EK AL + + L + EH + +++ A
Sbjct: 490 RRQTLKNAERYITPELKELEDKILSAE-EKALALEYELFEELREEVAEHIERLQKLAKAL 548
Query: 959 AELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLG-HPVLRSDSLGKGEFVPN 1017
AELD L SLA ++ RP D + I G HPV+ LG FVPN
Sbjct: 549 AELDVLASLAEVAEENN--YVRPEFTDDPGID---IEE---GRHPVVEQ-VLGGEPFVPN 599
Query: 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRM 1077
D + +L+TGPNM GKST +RQV L V+LAQ+G+ VPAE I VDRIF R+
Sbjct: 600 DCDLDEERR--LLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDRIFTRI 657
Query: 1078 GAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVH 1137
GA D + +G+STF+ E++ETA +L++AT SLV+LDE+GRGTST DG +IA +V E+
Sbjct: 658 GASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHD 717
Query: 1138 KVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEE----VTFLYRLSPGACP 1193
K+ + LF+THYH L +K P V H+A V+E + FL+++ PGA
Sbjct: 718 KIGAKTLFATHYHELTELEEKLPGVKNVHVA---------VKEHGGDIVFLHKVVPGAAD 768
Query: 1194 KSYGVNVARLAGIPDKVLQKAVAKSTEFEAIYGKHKKESEEN 1235
KSYG++VA+LAG+P V+++A + E+ K K S E
Sbjct: 769 KSYGIHVAKLAGLPASVIKRAREILAQLESASEKAKAASAEE 810
|
Length = 854 |
| >gnl|CDD|233259 TIGR01070, mutS1, DNA mismatch repair protein MutS | Back alignment and domain information |
|---|
Score = 391 bits (1007), Expect = e-119
Identities = 267/916 (29%), Positives = 409/916 (44%), Gaps = 142/916 (15%)
Query: 327 LSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ------PHC 380
L+ +Q+ + K++H D ++FF+MG FYELF DA A+ LD+ Q P
Sbjct: 1 LTPMMQQYLKLKAEHPDALLFFRMGDFYELFYEDAKKAAQLLDISLTSRGQSADEPIPMA 60
Query: 381 GFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTL 440
G P +EKL ++G V + EQ E P+ KG V+RE+ ++T GT+
Sbjct: 61 GIPYHAVEAYLEKLVKQGESVAICEQIEDPKT------AKG----PVEREVVQLITPGTV 110
Query: 441 TEGELLSANPDASYLMAL-TESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSV 499
++ LL D + L A+ ESN FG+ +D+ T +V + D
Sbjct: 111 SDEALLPERQD-NLLAAIAQESNG----------FGLATLDLTTGEF---KVTELADKET 156
Query: 500 LCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIY 559
L L L P E++ L+E +E++
Sbjct: 157 LYAELQRLNPAEVL----------------------------LAEDLSEME-AIELREFR 187
Query: 560 NRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSF 619
SL Q + L L + L L+A G L Y K
Sbjct: 188 KDTAVMSLEA--------QFGTEDLGGLGLRNAPLG---------LTAAGCLLQYAK--- 227
Query: 620 LDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHC 679
R + L + +M LDA NLE+ EN R G TL++ L+
Sbjct: 228 ------RTQRTALPHLQPVRLYELQDFMQLDAATRRNLELTENLRGG-KQNTLFSVLDET 280
Query: 680 VTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFAL--EFRKALSRLPDMERLL 737
TA G RLL+ WL RPL + ++ RQD V L + F L R L + D+ERL
Sbjct: 281 KTAMGSRLLKRWLHRPLRDREVLEARQDTVEVLL---RHFFLREGLRPLLKEVGDLERLA 337
Query: 738 ARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQL 797
AR+ A A R D A +L+ + L L A+LE E L
Sbjct: 338 ARV-ALGNARPR---------DLA--RLRTSLEQLPE----------LRALLEELEGPTL 375
Query: 798 HHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMD-YDSACKKVKEIEASL 856
+ + +L+ + A N ++ GG+ + YD +++
Sbjct: 376 QALA---AQIDDFSELLELLEAAL----IENPPLVVRDGGLIREGYDEELDELRAASREG 428
Query: 857 TKHLKE-QRKLLGDTSITYVTIG---KDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWT 912
T +L + + T I + +G Y +EV VP Y R + K RY T
Sbjct: 429 TDYLARLEARERERTGIPTLKVGYNAVFGYYIEVTRGQLHLVPAHYRRRQTLKNAERYIT 488
Query: 913 PNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASD 972
P +K+ ++ +AE + + K + + L ++ ++ A AELD L +LA ++
Sbjct: 489 PELKEKEDKVLEAEGKILALEKELFEELRELLKKYLEALQEAARALAELDVLANLAEVAE 548
Query: 973 FYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILL 1032
RP D +P + + HPV+ + + + FVPND+ + N +L+
Sbjct: 549 TLH--YTRPRFGD-----DPQLRIREGRHPVV--EQVLRTPFVPNDLEMAH--NRRMLLI 597
Query: 1033 TGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLT 1092
TGPNMGGKST +RQ L +LAQ+G+ VPAE E+ DRIF R+GA D + +G+STF+
Sbjct: 598 TGPNMGGKSTYMRQTALIALLAQIGSFVPAESAELPLFDRIFTRIGASDDLASGRSTFMV 657
Query: 1093 ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRL 1152
E++E A +L +AT NSLV+ DE+GRGTST DG A+A ++ E+ ++ + LF+THY L
Sbjct: 658 EMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFEL 717
Query: 1153 AVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQ 1212
+ P + H+A NG + FL+++ PG KSYG+ VA LAG+P +V+
Sbjct: 718 TALEESLPGLKNVHVAALEHNG-----TIVFLHQVLPGPASKSYGLAVAALAGLPKEVIA 772
Query: 1213 KAVAKSTEFEAIYGKH 1228
+A T+ EA +
Sbjct: 773 RARQILTQLEARSTES 788
|
[DNA metabolism, DNA replication, recombination, and repair]. Length = 840 |
| >gnl|CDD|213253 cd03286, ABC_MSH6_euk, ATP-binding cassette domain of eukaryotic MutS6 homolog | Back alignment and domain information |
|---|
Score = 318 bits (816), Expect = e-100
Identities = 124/220 (56%), Positives = 158/220 (71%), Gaps = 4/220 (1%)
Query: 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ 1055
+ L HP L + + FVPND+ +G + ++LTGPNMGGKSTLLR VCLAVI+AQ
Sbjct: 2 FEELRHPCLNAST--ASSFVPNDVDLGA-TSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ 58
Query: 1056 VGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDEL 1115
+G DVPA+ +S VDRIF R+GA+D IM G+STF+ ELSETA +L AT +SLV+LDEL
Sbjct: 59 MGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATPDSLVILDEL 118
Query: 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN-G 1174
GRGTST DG AIA +VLE+ V KV+C LFSTHYH L ++ + V L HMAC V N
Sbjct: 119 GRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHEHGGVRLGHMACAVKNES 178
Query: 1175 VGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKA 1214
+ ++TFLY+L G CPKSYG+ VA +AGIPD V+++A
Sbjct: 179 DPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 218 |
| >gnl|CDD|215944 pfam00488, MutS_V, MutS domain V | Back alignment and domain information |
|---|
Score = 307 bits (788), Expect = 3e-96
Identities = 118/244 (48%), Positives = 157/244 (64%), Gaps = 12/244 (4%)
Query: 979 CRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMG 1038
RP +S + + HPV+ + L G FVPND+++G + +L+TGPNMG
Sbjct: 2 VRPEFTES-----AALHIEGGRHPVVEA-VLDAGNFVPNDVSLG-KERSRILLITGPNMG 54
Query: 1039 GKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETA 1098
GKST LRQV L VI+AQ+G+ VPAE I VDRIF R+GA D + +G+STF+ E+ ETA
Sbjct: 55 GKSTYLRQVALIVIMAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMLETA 114
Query: 1099 LMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158
+L +AT SLV+LDELGRGTST DG AIA +V EH K++ R LF+THYH L +K
Sbjct: 115 NILHNATDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEKIRARTLFATHYHELTKLAEK 174
Query: 1159 DPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKS 1218
P V HMA NG ++ FLY++ PGA KSYG++VA LAG+P+ V+++A
Sbjct: 175 LPAVKNVHMAAVETNG-----DIVFLYKVKPGAADKSYGIHVAELAGLPESVVERAREVL 229
Query: 1219 TEFE 1222
E E
Sbjct: 230 AELE 233
|
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain V of Thermus aquaticus MutS as characterized in, which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters. Length = 235 |
| >gnl|CDD|197777 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Score = 289 bits (742), Expect = 2e-90
Identities = 98/186 (52%), Positives = 129/186 (69%), Gaps = 5/186 (2%)
Query: 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQS 1088
+++TGPNMGGKST LRQV L VI+AQ+G+ VPAE E+ DRIF R+GA D + G S
Sbjct: 1 VVIITGPNMGGKSTYLRQVALIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLS 60
Query: 1089 TFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTH 1148
TF+ E+ ETA +L +AT+NSLV+LDELGRGTST DG AIA ++LE+ + K+ R LF+TH
Sbjct: 61 TFMVEMKETANILKNATKNSLVLLDELGRGTSTYDGLAIAAAILEYLLEKIGARTLFATH 120
Query: 1149 YHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPD 1208
YH L P V HM+ E +TFLY+L PG KSYG+ VA+LAG+P
Sbjct: 121 YHELTKLADNHPGVRNLHMSALEET-----ENITFLYKLKPGVAGKSYGIEVAKLAGLPK 175
Query: 1209 KVLQKA 1214
+V+++A
Sbjct: 176 EVIERA 181
|
Length = 185 |
| >gnl|CDD|213251 cd03284, ABC_MutS1, ATP-binding cassette domain of MutS1 homolog | Back alignment and domain information |
|---|
Score = 256 bits (657), Expect = 2e-78
Identities = 103/214 (48%), Positives = 140/214 (65%), Gaps = 8/214 (3%)
Query: 1001 HPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060
HPV+ L FVPND + +L+TGPNM GKST LRQV L +LAQ+G+ V
Sbjct: 7 HPVVEQ-VLDNEPFVPNDTELDP--ERQILLITGPNMAGKSTYLRQVALIALLAQIGSFV 63
Query: 1061 PAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTS 1120
PA EI VDRIF R+GA D + G+STF+ E+ ETA +L++AT SLV+LDE+GRGTS
Sbjct: 64 PASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTS 123
Query: 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEE 1180
T DG +IA +++E+ K+ + LF+THYH L K PRV H+A + G
Sbjct: 124 TYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGG-----G 178
Query: 1181 VTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKA 1214
V FL+++ GA KSYG+ VARLAG+P++V+++A
Sbjct: 179 VVFLHKIVEGAADKSYGIEVARLAGLPEEVIERA 212
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 216 |
| >gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS homologs | Back alignment and domain information |
|---|
Score = 248 bits (636), Expect = 1e-75
Identities = 109/211 (51%), Positives = 138/211 (65%), Gaps = 12/211 (5%)
Query: 997 KSLGHPVLRSDSLGKGE-FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ 1055
K HPVL +L KGE FVPNDI +G + +L+TGPNMGGKST LR + LAV+LAQ
Sbjct: 3 KGGRHPVL--LALTKGETFVPNDINLG---SGRLLLITGPNMGGKSTYLRSIGLAVLLAQ 57
Query: 1056 VGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDEL 1115
+G VPAE I VDRIF R+GA+D I G+STF+ EL E +LS AT SLV++DEL
Sbjct: 58 IGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDEL 117
Query: 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175
GRGTST++G AIA +VLEH + K CR LF+TH+H LA ++ P V HM + G
Sbjct: 118 GRGTSTAEGLAIAYAVLEHLLEK-GCRTLFATHFHELADLPEQVPGVKNLHMEELITTG- 175
Query: 1176 GGVEEVTFLYRLSPGACPKSYGVNVARLAGI 1206
+TF Y+L G C SY + +A LAG+
Sbjct: 176 ----GLTFTYKLIDGICDPSYALQIAELAGL 202
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 202 |
| >gnl|CDD|213252 cd03285, ABC_MSH2_euk, ATP-binding cassette domain of eukaryotic MutS2 homolog | Back alignment and domain information |
|---|
Score = 226 bits (577), Expect = 2e-67
Identities = 92/226 (40%), Positives = 140/226 (61%), Gaps = 6/226 (2%)
Query: 997 KSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQV 1056
K HP + + F+PND+T+ G + F+++TGPNMGGKST +RQ+ + V++AQ+
Sbjct: 3 KEARHPCVEAQDDVA--FIPNDVTLT-RGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQI 59
Query: 1057 GADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELG 1116
G VP + +I VD I R+GA D + G STF+ E+ ETA +L SAT NSL+++DELG
Sbjct: 60 GCFVPCDSADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELG 119
Query: 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176
RGTST DG +A ++ E+ +++C LF+TH+H L + P V H+ +
Sbjct: 120 RGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASR 179
Query: 1177 GVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFE 1222
+T LY++ GAC +S+G++VA LA P +V++ A K+ E E
Sbjct: 180 ---TLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALELE 222
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 222 |
| >gnl|CDD|213254 cd03287, ABC_MSH3_euk, ATP-binding cassette domain of eukaryotic MutS3 homolog | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 9e-64
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 7/225 (3%)
Query: 994 ISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL 1053
I K HP++ +SL FVPNDI + G I+ TGPNMGGKS+ +RQV L I+
Sbjct: 1 ILIKEGRHPMI--ESLLDKSFVPNDIHLSAEGGYCQII-TGPNMGGKSSYIRQVALITIM 57
Query: 1054 AQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLD 1113
AQ+G+ VPA +S D + RMGA D I G STF+ ELSET+ +LS+ T SLV+LD
Sbjct: 58 AQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILD 117
Query: 1114 ELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD-YKKDPRVSLCHM---AC 1169
ELGRGTST DG AIA + L + + + +C LF THY L + + + HM
Sbjct: 118 ELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILRRFEGSIRNYHMSYLES 177
Query: 1170 QVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKA 1214
Q + +TFLY+L G +S+G+NVARLAG+P ++ +A
Sbjct: 178 QKDFETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 222 |
| >gnl|CDD|214710 smart00533, MUTSd, DNA-binding domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 2e-61
Identities = 113/338 (33%), Positives = 170/338 (50%), Gaps = 35/338 (10%)
Query: 669 SGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALS 728
G+L+ LNH T GKRLLR WL +PL + I ER DAV L N + R+ L
Sbjct: 1 KGSLFELLNHTKTPMGKRLLRRWLLQPLLDLKEINERLDAVEELVE-NPELRQKLRQLLK 59
Query: 729 RLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAI 788
R+PD+ERLL+R+ A+ R+ + LY+ + + L+E L + LG +
Sbjct: 60 RIPDLERLLSRIERGR-ASPRDL--LRLYD--SLEGLKEIRQLLESLDG-----PLLGLL 109
Query: 789 LENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKK 848
L+ L + +L+ D D +E N+ G I G D + D +K
Sbjct: 110 LKVILEPLLELLEL----------LLELLND-DDPLEVNDGGLIKD--GFDPELDELREK 156
Query: 849 VKEIEASLTKHLKEQRKLLG-DT-SITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKG 906
++E+E L + LK++R+ LG D+ + Y + Y +EV +S VP+D+ RSS K
Sbjct: 157 LEELEEELEELLKKEREELGIDSLKLGYNKVHG--YYIEVTKSEAKKVPKDFIRRSSLKN 214
Query: 907 FFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALIS 966
R+ TP +K+L EL +A+ E E K IL+ L+ + E+ + R + A AELD L+S
Sbjct: 215 TERFTTPELKELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVLLS 274
Query: 967 LAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVL 1004
LA + EG RP +DS + K+ HPVL
Sbjct: 275 LATLA--AEGNYVRPEFVDSG-----ELEIKNGRHPVL 305
|
Length = 308 |
| >gnl|CDD|218489 pfam05192, MutS_III, MutS domain III | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 3e-55
Identities = 91/324 (28%), Positives = 139/324 (42%), Gaps = 39/324 (12%)
Query: 651 APALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVA 710
A L NLE+F N G G+L L+ VT GKRLLR WL RPL + I R DAV
Sbjct: 1 AATLRNLELFRN-LRGGKKGSLLGLLDRTVTPMGKRLLRRWLLRPLTDLDEINARLDAVE 59
Query: 711 GLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFIS 770
L + E R+AL +PD+ERLL+RL + ++ ++
Sbjct: 60 ELL---EDLREELREALKGIPDLERLLSRLA------------------LGRASPRDLLA 98
Query: 771 ALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDW---VEAN 827
E + L + +L + +L+ + A D +
Sbjct: 99 LRSSLEALPALRKLLAS----------APLLADLADQLPLPELLELLERAIDEDPPLSLR 148
Query: 828 NSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLY-LLEV 886
+ G I G D + D + E+ L + L+ +R+ G S+ Y ++EV
Sbjct: 149 DGGVIKD--GYDPELDELRALLDELREKLAELLERERERTGIKSLKVGYNRVFGYYVIEV 206
Query: 887 PESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCE 946
S VP DY RS+ K R+ TP +K+L +L +AE + K IL+ L+ +
Sbjct: 207 KASKADKVPGDYIRRSTTKNAVRFTTPELKELERKLLEAEERALALEKEILEELLERVLS 266
Query: 947 HH-NKWRQMVAATAELDALISLAI 969
+ +++ A AELD L+SLA
Sbjct: 267 EYAELLQELADAIAELDVLLSLAE 290
|
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam00488, pfam05188, pfam01624 and pfam05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterized in. Length = 290 |
| >gnl|CDD|213248 cd03281, ABC_MSH5_euk, ATP-binding cassette domain of eukaryotic MutS5 homolog | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 3e-52
Identities = 83/213 (38%), Positives = 121/213 (56%), Gaps = 13/213 (6%)
Query: 1001 HPV--LRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058
HP+ L DS FVPND IGG G S +++TGPN GKS L+QV L V LA +G+
Sbjct: 7 HPLLELFVDS-----FVPNDTEIGG-GGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGS 60
Query: 1059 DVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRG 1118
VPA+ I VD+IF RM +++ + +GQS F+ +L + + L ATR SLV++DE G+G
Sbjct: 61 FVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKG 120
Query: 1119 TSTSDGQAIAESVLEHFVHKVQC--RGLFSTHYHRL--AVDYKKDPRVSLCHMA-CQVGN 1173
T T DG + + +EH + + R + STH+H L + ++ M
Sbjct: 121 TDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSLLPERLKIKFLTMEVLLNPT 180
Query: 1174 GVGGVEEVTFLYRLSPGACPKSYGVNVARLAGI 1206
E++T+LYRL PG S+ ++ A+LAGI
Sbjct: 181 STSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 213 |
| >gnl|CDD|213249 cd03282, ABC_MSH4_euk, ATP-binding cassette domain of eukaryotic MutS4 homolog | Back alignment and domain information |
|---|
Score = 154 bits (390), Expect = 1e-42
Identities = 79/206 (38%), Positives = 116/206 (56%), Gaps = 12/206 (5%)
Query: 1001 HPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060
HP+L D K F+PNDI + G++ F ++TGPNM GKST L+Q+ L I+AQ+G V
Sbjct: 7 HPILDRD---KKNFIPNDIYLT-RGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFV 62
Query: 1061 PAEIFEISPV-DRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGT 1119
PAE + P+ +R+ R+ D + STF +E+SETA +L A +SLV++DELGRGT
Sbjct: 63 PAE-YATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGT 121
Query: 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVE 1179
S++DG AI+ ++LE + K + F+TH+ +A V HM Q N G
Sbjct: 122 SSADGFAISLAILECLI-KKESTVFFATHFRDIAAILGNKSCVVHLHMKAQSINSNG--- 177
Query: 1180 EVTFLYRLSPGA-CPKSYGVNVARLA 1204
+ Y+L G G+ R+
Sbjct: 178 -IEMAYKLVLGLYRIVDDGIRFVRVL 202
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 204 |
| >gnl|CDD|216613 pfam01624, MutS_I, MutS domain I | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 1e-39
Identities = 47/121 (38%), Positives = 64/121 (52%), Gaps = 16/121 (13%)
Query: 330 GQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ------PHCGFP 383
+Q+ E KSK+ D V+FF++G FYELF DA + A+EL + P G P
Sbjct: 3 MMRQYLELKSKYPDAVLFFRVGDFYELFGEDAEIAARELGITLTVRGGGSGKRIPMAGVP 62
Query: 384 ERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEG 443
E F + +L KGY+V + EQTE P + VVKRE+ V+T GTLT+
Sbjct: 63 EHAFETYLRRLVNKGYKVAICEQTEDPAE----------AKGVVKREVVRVITPGTLTDE 112
Query: 444 E 444
E
Sbjct: 113 E 113
|
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam00488, pfam05188, pfam05192 and pfam05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with globular domain I, which is involved in DNA binding, in Thermus aquaticus MutS as characterized in. Length = 113 |
| >gnl|CDD|213250 cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like homolog | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 1e-37
Identities = 71/214 (33%), Positives = 107/214 (50%), Gaps = 17/214 (7%)
Query: 995 SAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA 1054
AK+LGHP++ + + V NDI + + IL+TG NM GKST LR + + VILA
Sbjct: 1 EAKNLGHPLIGRE-----KRVANDIDME---KKNGILITGSNMSGKSTFLRTIGVNVILA 52
Query: 1055 QVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN--SLVVL 1112
Q GA V A FE+ P +IF + D + G S F EL ++ A + L +L
Sbjct: 53 QAGAPVCASSFEL-PPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLL 111
Query: 1113 DELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172
DE+ +GT++ + QA + +VL+ F+ G+ STH LA D V H +
Sbjct: 112 DEIFKGTNSRERQAASAAVLK-FLKNKNTIGIISTHDLELADLLDLDSAVRNYHFREDID 170
Query: 1173 NGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGI 1206
+ ++ F Y+L PG P + + + GI
Sbjct: 171 DN-----KLIFDYKLKPGVSPTRNALRLMKKIGI 199
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 199 |
| >gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 3e-32
Identities = 119/493 (24%), Positives = 199/493 (40%), Gaps = 48/493 (9%)
Query: 741 FASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHI 800
S E N R + E + +L + L ++ A+ + L
Sbjct: 53 LGSIENNVRFFGFEDIRELLKRAELGGIVKGLEYILVI------QNALKTVKHLKVLSEH 106
Query: 801 LTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHL 860
+ + L + L + + A I G V D A +++ I SL
Sbjct: 107 VLDLEILFHLRLNLITLPPLENDIIAC----IDDDGKV---KDGASEELDAIRESLKALE 159
Query: 861 KEQRKLLGDT----------SITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRY 910
+E K L S T VTI Y+L + +G + SS G Y
Sbjct: 160 EEVVKRLHKIIRSKELAKYLSDTIVTIRNGRYVLPLKSGFKGKIKGIVHDTSSS-GETFY 218
Query: 911 WTPN-IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAI 969
P I KL +L+Q ++E+E ++ IL+ L + E+ + + + LD+L + A
Sbjct: 219 IEPQAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQARAR 278
Query: 970 ASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASF 1029
+ +G P + I ++ HP+L+ + VP + +
Sbjct: 279 YAKAVKGEFPMP-------SFTGKIILENARHPLLKEPKV-----VPFTLNLKF--EKRV 324
Query: 1030 ILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPV-DRIFVRMGAKDHIMAGQS 1088
+ +TGPN GGK+ L+ + L ++ Q G +PA P + IF +G + I S
Sbjct: 325 LAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLS 384
Query: 1089 TFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTH 1148
TF + + +LS T NSLV+ DELG GT +G A+A S+LE+ + K + L +TH
Sbjct: 385 TFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEY-LLKQNAQVLITTH 443
Query: 1149 YHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPD 1208
Y L + V + E ++ Y+L G +SY +A+ GIP
Sbjct: 444 YKELKALMYNNEGVENASVLFD-------EETLSPTYKLLKGIPGESYAFEIAQRYGIPH 496
Query: 1209 KVLQKAVAKSTEF 1221
++++A EF
Sbjct: 497 FIIEQAKTFYGEF 509
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function [DNA metabolism, Other]. Length = 771 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 8e-30
Identities = 55/168 (32%), Positives = 79/168 (47%), Gaps = 25/168 (14%)
Query: 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIF--EISP-- 1069
FVPND+T G S ++TGPN GKST+L + LA+ AQ + + I
Sbjct: 11 FVPNDVTFG---EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAV 67
Query: 1070 -VDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN--SLVVLDELGRGTSTSDGQA 1126
+ IF R+ + G+ ELS AL+L+ A+ L +LDE+ RG DGQA
Sbjct: 68 SAELIFTRLQ----LSGGEK----ELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119
Query: 1127 IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174
+AE++LEH V + + TH LA L H+ +
Sbjct: 120 LAEAILEHLVK--GAQVIVITHLPELAELA-----DKLIHIKKVITGV 160
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2 | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 1e-29
Identities = 66/207 (31%), Positives = 99/207 (47%), Gaps = 14/207 (6%)
Query: 1001 HPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060
HP+L L + VP DI +G N +++TGPN GGK+ L+ + L ++AQ G +
Sbjct: 7 HPLL---PLQGEKVVPLDIQLGE--NKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPI 61
Query: 1061 PA-EIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGT 1119
PA E + + IF +G + I STF + + A +L A +SLV+LDELG GT
Sbjct: 62 PAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGT 121
Query: 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVE 1179
+G A+A ++LE + + +THY L K V M E
Sbjct: 122 DPVEGAALAIAILEEL-LERGALVIATTHYGELKAYAYKREGVENASMEFD-------PE 173
Query: 1180 EVTFLYRLSPGACPKSYGVNVARLAGI 1206
+ YRL G +S + +AR G+
Sbjct: 174 TLKPTYRLLIGVPGRSNALEIARRLGL 200
|
MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 200 |
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-25
Identities = 110/413 (26%), Positives = 181/413 (43%), Gaps = 74/413 (17%)
Query: 832 IIPHGGVDMDYDSACKKVKEIEASLTKHLKEQ--------------RKLLGDTSITYVTI 877
I G V DSA +K++ I L + K + +K L DT IT
Sbjct: 139 IDEEGEV---KDSASEKLRGIRRQL-RRKKSRIREKLESIIRSKSLQKYLQDTIITIRN- 193
Query: 878 GKDLYLLEVPESLRGSVP---RDYELRSSKKGFFRYWTPN-IKKLLGELSQAESEKESAL 933
D Y+L V + ++ D +SS Y P + +L E+ + +++E +
Sbjct: 194 --DRYVLPVKAEYKHAIKGIVHD---QSSSGATL-YIEPQSVVELNNEIRELRNKEEQEI 247
Query: 934 KSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPY 993
+ IL+ L + ++ + + + ELD + + A + + N+E
Sbjct: 248 ERILKELSAKVAKNLDFLKFLNKIFDELDFIFARARYAKALKATFPLF-------NDEGK 300
Query: 994 ISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL 1053
I + HP+L + + VP DI++G +++TGPN GGK+ L+ + LA ++
Sbjct: 301 IDLRQARHPLLDGEKV-----VPKDISLGFDKTV--LVITGPNTGGKTVTLKTLGLAALM 353
Query: 1054 AQVGADVPA-EIFEISPVDRIFVRMGAKDHIMAGQSTF---LTELSETALMLSSATRNSL 1109
A+ G +PA E EI IF +G + I STF +T + +L A +NSL
Sbjct: 354 AKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVR---ILEKADKNSL 410
Query: 1110 VVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYK-KDPRVSLCHMA 1168
V+ DELG GT +G A+A S+LE+ + K + + +THY L V
Sbjct: 411 VLFDELGAGTDPDEGAALAISILEY-LRKRGAKIIATTHYKELKA-LMYNREGVENA--- 465
Query: 1169 CQVGNGVGGVE--EVTF--LYRL---SPGACPKSYGVNVARLAGIPDKVLQKA 1214
VE E T YRL PG KS +A+ G+P+ ++++A
Sbjct: 466 --------SVEFDEETLRPTYRLLIGIPG---KSNAFEIAKRLGLPENIIEEA 507
|
Length = 782 |
| >gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-21
Identities = 95/409 (23%), Positives = 169/409 (41%), Gaps = 51/409 (12%)
Query: 842 YDSACKKVKEIEASLTKHLKEQRKLLGDTSITY---------VTIGKDLYLLEVPESLRG 892
D A ++ I L +E R L + VT +L V +G
Sbjct: 139 KDRASFELDAIRRQLRDLEEEIRDKLESLIRSKEAKYLQDRIVTTRDGREVLPVKAEFKG 198
Query: 893 SVP-RDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKW 951
++ ++ SS + ++ KL EL E++ + IL+ L +
Sbjct: 199 AIKGIVHDTSSSGATLYIEPR-SVVKLNNELRALLVEEDEEEERILRELSALVAPVIPEL 257
Query: 952 RQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGK 1011
++ ELD + + + +G + SN+ + HP+L+ D
Sbjct: 258 EILLEIIGELDFIEAKVRYAKALKG------VKPDFSNDG-VLELLDARHPLLKED---- 306
Query: 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-FEISPV 1070
VPND+ +G + +++TGPN GGK+ L+ + L ++AQ G +PA E+
Sbjct: 307 ---VPNDLELGEELDR--LIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVF 361
Query: 1071 DRIFVRMGAKDHIMAGQSTF---LTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127
+IF +G + I STF +T + E +SLV+ DELG GT +G A+
Sbjct: 362 VKIFADIGDEQSIEQSLSTFSSHMTNIVEIL-----EKADSLVLFDELGSGTDPDEGAAL 416
Query: 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRL 1187
A ++LE + + + + +THY L + V M E + YRL
Sbjct: 417 AIAILED-LLEKPAKIVATTHYRELKALAAEREGVENASM-------EFDAETLRPTYRL 468
Query: 1188 SPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEAIYGKHKKESEENL 1236
G +S ++A G+P+ ++++A + +G+ K+ EE +
Sbjct: 469 LEGVPGRSNAFDIALRLGLPEPIIEEA-------KTEFGEEKELLEELI 510
|
Length = 753 |
| >gnl|CDD|218487 pfam05190, MutS_IV, MutS family domain IV | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 2e-19
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 837 GVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPR 896
G D + D ++E+E+ L + L ++R+ LG S+ Y +EV S VP+
Sbjct: 1 GFDEELDELRDLLEELESELDELLAKERERLGIKSLKVGYNKVFGYYIEVTRSEAKKVPK 60
Query: 897 DYELRSSKKGFFRYWTPNIKKLLGELSQAESE 928
DY R + K R+ TP +KKL EL +AE E
Sbjct: 61 DYIRRQTLKNGVRFTTPELKKLEDELLEAEEE 92
|
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam00488. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds in part with globular domain IV, which is involved in DNA binding, in Thermus aquaticus MutS as characterized in. Length = 92 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-10
Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 11/140 (7%)
Query: 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRI 1073
+T+ + L GPN GKSTLLR + + + + P++ +
Sbjct: 15 LDNVSLTLK---AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL 71
Query: 1074 FVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLE 1133
R+G + GQ + A L L++LDE G + + + E + E
Sbjct: 72 RRRIGYVPQLSGGQ----RQRVALARAL--LLNPDLLLLDEPTSGLDPASRERLLELLRE 125
Query: 1134 HFVHKVQCRGLFSTHYHRLA 1153
+ TH LA
Sbjct: 126 LAEEGRT--VIIVTHDPELA 143
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|218486 pfam05188, MutS_II, MutS domain II | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 14/104 (13%)
Query: 453 SYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEI 512
+YL A+ S+ +G+ +D++T + + D L LS L P E+
Sbjct: 1 NYLAAI--------SRGDGNRYGLAFLDLSTGEFGVSEFE---DFEELLAELSRLSPKEL 49
Query: 513 IKPANMLSPETERAILRHTRNPLVNDLVPLSEFW--DAETTVLE 554
+ P ++ S + L P F A + E
Sbjct: 50 LLPESLSSSTVAESQKLLELR-LRVGRRPTWLFELEHAYEDLNE 92
|
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam00488, pfam01624, pfam05192 and pfam05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. This domain corresponds to domain II in Thermus aquaticus MutS as characterized in, and has similarity resembles RNAse-H-like domains (see pfam00075). Length = 133 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1288 | |||
| KOG0217 | 1125 | consensus Mismatch repair ATPase MSH6 (MutS family | 100.0 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 100.0 | |
| TIGR01070 | 840 | mutS1 DNA mismatch repair protein MutS. | 100.0 | |
| COG0249 | 843 | MutS Mismatch repair ATPase (MutS family) [DNA rep | 100.0 | |
| KOG0218 | 1070 | consensus Mismatch repair MSH3 [Replication, recom | 100.0 | |
| KOG0219 | 902 | consensus Mismatch repair ATPase MSH2 (MutS family | 100.0 | |
| KOG0220 | 867 | consensus Mismatch repair ATPase MSH4 (MutS family | 100.0 | |
| KOG0221 | 849 | consensus Mismatch repair ATPase MSH5 (MutS family | 100.0 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 100.0 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 100.0 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 100.0 | |
| COG1193 | 753 | Mismatch repair ATPase (MutS family) [DNA replicat | 100.0 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 100.0 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 100.0 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 100.0 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 100.0 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 100.0 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 100.0 | |
| smart00533 | 308 | MUTSd DNA-binding domain of DNA mismatch repair MU | 100.0 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 100.0 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 100.0 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 100.0 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.98 | |
| PF01624 | 113 | MutS_I: MutS domain I C-terminus.; InterPro: IPR00 | 99.97 | |
| PF05192 | 204 | MutS_III: MutS domain III C-terminus.; InterPro: I | 99.88 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.82 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.82 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.81 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.8 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.78 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.78 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.77 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.76 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.75 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.73 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.73 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.73 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.72 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.72 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.72 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.72 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.72 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.71 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.71 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.71 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.71 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.71 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.7 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.7 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.7 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.7 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.7 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.7 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.7 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.7 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.7 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.69 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.69 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.69 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.69 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.69 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.69 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.69 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.69 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.69 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.69 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.69 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.69 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.69 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.68 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.68 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.68 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.68 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.68 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.68 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.68 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.68 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.68 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.68 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.68 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.68 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.68 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.68 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.68 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.68 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.68 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.68 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.68 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.68 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.67 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.67 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.67 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.67 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.67 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.67 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.67 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.67 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.67 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.67 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.67 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.67 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.67 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.67 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.67 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.67 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.67 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.66 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.66 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.66 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.66 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.66 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.66 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.66 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.66 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.66 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.66 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.66 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.66 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.66 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.66 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.66 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.66 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.66 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.66 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.66 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.66 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.66 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.66 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.66 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.66 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.66 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.66 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.65 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.65 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.65 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.65 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.65 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.65 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.65 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.65 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.65 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.65 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.65 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.65 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.65 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.65 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.65 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.65 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.65 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.65 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.65 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.64 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.64 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.64 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.64 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.64 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.64 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.64 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.64 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.64 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.64 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.64 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.64 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.64 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.63 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.63 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.63 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.63 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.63 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.63 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.63 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.63 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.63 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.63 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.63 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.63 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.63 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.63 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.63 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.63 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.63 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.63 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.63 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.63 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.63 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.63 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.63 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.62 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.62 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.62 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.62 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.62 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.62 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.62 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.62 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.62 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.62 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.62 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.62 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.62 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.62 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.61 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.61 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.61 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.61 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.61 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.61 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.61 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.61 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.61 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.61 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.61 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.61 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.61 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.61 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.61 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.61 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.61 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.61 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.61 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.6 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.6 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.6 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.6 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.6 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.6 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.6 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.6 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.6 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.59 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.59 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.59 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.59 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.59 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.59 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.59 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.59 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.59 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.59 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.59 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.59 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.59 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.59 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.59 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.59 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.59 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.59 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.59 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.59 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.58 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.58 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.58 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.58 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.58 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.58 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.58 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.58 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.58 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.58 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.58 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.58 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.58 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.58 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.58 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.58 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.58 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.58 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.57 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.57 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.57 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.57 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.57 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.57 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.57 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.57 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.57 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.57 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.57 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.57 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.57 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.57 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.56 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.56 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.56 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.56 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.56 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.56 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.56 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.56 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.56 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.56 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.56 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.56 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.55 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.55 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.55 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.55 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.55 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.55 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.55 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.54 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.54 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.54 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.54 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.54 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.54 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.54 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.53 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.53 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.53 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.52 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.52 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.52 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.52 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.51 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.51 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.51 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.51 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.5 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.5 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.49 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.49 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.48 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.48 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.48 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.47 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.47 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.47 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.46 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.46 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.46 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.46 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.46 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.46 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.43 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.43 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.43 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.42 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.42 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.42 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.41 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.41 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.41 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.4 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.4 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.4 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.39 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.39 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.38 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.38 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.38 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.38 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.37 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.37 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.37 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.37 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.37 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.37 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.35 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.35 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.35 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.35 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.34 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.34 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.33 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.33 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.33 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.33 | |
| PF05188 | 137 | MutS_II: MutS domain II; InterPro: IPR007860 Misma | 99.33 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.33 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.33 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.3 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.29 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.28 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.28 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.26 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.25 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.25 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.24 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.23 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.23 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.22 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.21 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.21 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.19 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.16 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.16 | |
| PF05190 | 92 | MutS_IV: MutS family domain IV C-terminus.; InterP | 99.16 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.16 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.15 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.15 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.15 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.14 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.14 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.13 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.12 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.1 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.09 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.09 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.09 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.08 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.08 | |
| PF09465 | 55 | LBR_tudor: Lamin-B receptor of TUDOR domain; Inter | 99.07 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.06 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.06 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.06 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.06 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.03 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.01 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.0 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 98.97 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 98.97 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 98.97 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 98.96 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 98.95 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 98.93 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 98.9 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 98.83 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 98.82 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 98.81 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 98.8 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 98.75 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 98.74 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 98.7 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 98.7 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 98.7 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 98.65 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 98.57 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.51 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 98.49 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 98.47 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 98.43 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 98.28 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.23 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 98.11 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.08 | |
| KOG4675 | 273 | consensus Uncharacterized conserved protein, conta | 98.04 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.03 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 98.0 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 98.0 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 97.98 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 97.94 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 97.9 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 97.87 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 97.86 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 97.83 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 97.79 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.79 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 97.73 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 97.65 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 97.58 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 97.54 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.45 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.39 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 97.39 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.29 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.27 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.19 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.19 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 97.18 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.16 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.13 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 97.09 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.07 | |
| PF13481 | 193 | AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. | 97.06 | |
| KOG0219 | 902 | consensus Mismatch repair ATPase MSH2 (MutS family | 97.03 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 97.03 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 96.99 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 96.99 | |
| smart00333 | 57 | TUDOR Tudor domain. Domain of unknown function pre | 96.98 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 96.98 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 96.94 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 96.91 | |
| PRK06526 | 254 | transposase; Provisional | 96.91 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 96.9 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 96.89 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 96.89 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 96.88 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.84 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 96.82 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.78 | |
| cd04508 | 48 | TUDOR Tudor domains are found in many eukaryotic o | 96.78 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 96.77 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 96.74 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.72 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 96.72 | |
| smart00743 | 61 | Agenet Tudor-like domain present in plant sequence | 96.7 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 96.68 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 96.67 | |
| PRK08181 | 269 | transposase; Validated | 96.66 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 96.64 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 96.61 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 96.61 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 96.59 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 96.59 | |
| PF13173 | 128 | AAA_14: AAA domain | 96.58 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 96.58 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 96.57 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 96.54 | |
| PRK13764 | 602 | ATPase; Provisional | 96.53 |
| >KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-174 Score=1556.77 Aligned_cols=1055 Identities=44% Similarity=0.708 Sum_probs=879.0
Q ss_pred cccccccccccceEEeecCCCcEEeEEEEeeeCCCCcEEEEccCCchhhhccCcceEEEEecchhh--hhhccccccccc
Q 000778 98 AKSYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWVQESVSL--LKRLRRDSFKKV 175 (1288)
Q Consensus 98 ~~~~~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~l~~e~~~~~~~~~~~--~~~~~~~~~~~~ 175 (1288)
.-.++++.+| .||.+.|..++.+..+ |-++...-+..-+|+-+|......+ ..|++. ..+
T Consensus 8 ~~t~~~e~~~-----------~~~~~~v~~~~~~e~k----~l~~~t~k~~~~~e~~~~~~~~~r~~~~~rv~~---~e~ 69 (1125)
T KOG0217|consen 8 HMTFFEETPG-----------KLYRNSVGLKPKEEPK----SLRNGTLKIKNLKEKEEFKSGQPREVVSSRVKE---YEA 69 (1125)
T ss_pred ceeecccCcc-----------hhcccccccCCccchh----hhcCCCcCcCccchhhHhhccCccccccccccc---hhh
Confidence 4456777777 7999999998877766 6555554444445666666311111 111111 222
Q ss_pred ccCChhhhhccc-CccCCCCCCCcchhhc-ccCCC-CCCCcchh-------hchhhhhhh--------ccccCCccccCC
Q 000778 176 VVEDDEEMENVE-DEISDDRSDSSDDDWN-KNVGK-EDVSEDEE-------VDLVDEQEN--------KVLRGRKRKSSG 237 (1288)
Q Consensus 176 ~~~~~~~~~~~~-~~~~~~~~~~~d~~~~-~~~~~-~~~~~~e~-------~~~~~e~e~--------~~~~~~~~~~~~ 237 (1288)
+..+.+...+.. .-.-++.+++||+||+ |.+.+ +++++++| ++..+|+.. +.+++|.+++..
T Consensus 70 ~~~d~~~~~~~~~~~~k~~~~sDsd~d~g~k~~~~~~~~d~~~~D~~~~d~~~~~~ee~~~~~~~~~~~~~~~r~~~a~~ 149 (1125)
T KOG0217|consen 70 VGDDADIVVESSSEKPKSGLDSDSDEDFGGKEVEEKEDSDEELDDETASDYEVVISEESEGGEPVCRVSDTDSRSRKAES 149 (1125)
T ss_pred cCCCccceeeecccCCccccCCCcccccCcccccccccccccccccccCCcceeccccccCCCcccccCCCcccchhccc
Confidence 222222222222 2233445777888886 22222 22222111 111111111 234566666644
Q ss_pred ccCCC-----CCCCCCCCCccccccCCcccc-CC-CCCCCCC-CCCccccccccccccccccccccCC-CCCccCCCCCC
Q 000778 238 VKKSK-----SDGNAVNADFKSPIIKPVKIF-GS-DKLSNGF-DNPVMGDVSERFSAREADKFHFLGP-DRRDAKRRRPG 308 (1288)
Q Consensus 238 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-~~rD~~~r~p~ 308 (1288)
..|++ +...+...+.......|.+-. +. ++.+.+. ....-++..+|+..+.++++.||.+ ++||+++|||+
T Consensus 150 v~k~~~kk~~~~~~~~~~~~~~~~~~p~~~~~~~a~r~~~~~~~i~~~~~~~~~~~a~~~E~~r~l~~e~~RD~~rrr~~ 229 (1125)
T KOG0217|consen 150 VSKGKSKKSPSDSGAVSMGHDLDFNDPMPLREGQASRSASGYCGISNGETELSRMEAFDHEKERYLKLEDVRDALRRRRG 229 (1125)
T ss_pred ccccccCCCCCCccccccccccccCCCCccccCccccccccccccccccccccchhhhcccchhhccHHHhhhhhcCCCC
Confidence 22222 223344455555556666621 22 2222222 2223344467788888888777775 57999999999
Q ss_pred CCCCCCCCCCCCcccccCCCHHHHHHHHHHhhCCCeEEEEeeCceEEEecccHHHHhhhcceeeecCCCCcCCcCcccHh
Q 000778 309 DVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFS 388 (1288)
Q Consensus 309 ~p~ydp~Tl~ip~~~~~~~TP~~~QyweiK~~~~D~VlfFkvGkFYEly~~DA~i~ak~L~L~~~~g~~~~~GfPe~sl~ 388 (1288)
||+|||+||||||++|++|||+++|||+||++|||||||||+|||||||++||.+++++|+|+||++++|||||||++|+
T Consensus 230 dp~yDp~TLyiP~s~~~kftpg~kqwWeiKs~~fD~ivfFk~GKFyELye~DA~vg~~~~dl~f~~vN~~~~GfPE~sf~ 309 (1125)
T KOG0217|consen 230 DPEYDPRTLYIPPSFWKKFTPGEKQWWEIKSDNFDTIVFFKKGKFYELYEMDALVGARLFDLKFMDVNMPHSGFPEGSFD 309 (1125)
T ss_pred CCCCCccceecCHHHHhcCCchhhhhhhhhhhcccEEEEEecchHHHHHhhhhhhhhhhcceeecccccccCCCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEeccCChHHHHHHhhhcCCCCceeeeeEEEEeeCcceeeccccCCCCCCcEEEEEEecCCCCCCC
Q 000778 389 MNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQ 468 (1288)
Q Consensus 389 ~y~~kLV~~GyKVavveQ~Et~~~~~~r~~~~g~~~kvv~Rev~~ViTpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~ 468 (1288)
.|+.+|+++|||||+|||+||+.++++|++.+|+++|||+||||+|+|+||++|..++. ++.+.|||||+|+..+. .
T Consensus 310 ~~a~q~iq~GYkvarVEQtEt~l~~e~r~~~~~~kdkvvrRev~~ilt~GT~td~~l~~-~~~akylmai~e~~~~~--~ 386 (1125)
T KOG0217|consen 310 YWADQFIQKGYKVARVEQTETPLGKEIRERKTGKKDKVVRREVCRILTNGTLTDIALLT-SDLAKYLMAIKESEESY--S 386 (1125)
T ss_pred hHHHHHHhccceeeeeccccChHHhhhhhcccccchhhHHHHHHHHhcCCcchhHHHhc-cHHHHHHHHHhhcCCCC--C
Confidence 99999999999999999999999999999999999999999999999999999977664 45677999999977542 1
Q ss_pred CCCCEEEEEEEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccCh
Q 000778 469 STDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDA 548 (1288)
Q Consensus 469 ~~~~~iGva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~ls~~~~~~l~~~~~~~~~~~~~~~~~f~~~ 548 (1288)
.+...+|+|++|++||+|+++||+||..++.|.|+|+|++|+|+|.+.+.++..|...++....++.+..++|..+||++
T Consensus 387 ~~~~s~gvc~iDtstge~~~~eF~DDr~~s~L~tlLs~~rp~E~I~e~~~ls~~t~~~ik~~~~~~~~~n~~~~~eFwds 466 (1125)
T KOG0217|consen 387 TGEVSFGVCFIDTSTGEINIGEFCDDRHCSKLDTLLSQVRPVELIEERKNLSDPTKVIIKLKLSSNLVENLVPKSEFWDS 466 (1125)
T ss_pred cCceeeeEEEEEcccceEEEEEeecchhhhHHHHHHHcccHHHHHHHhhccCCceeeeeeeeecchhhhcccChhhhcch
Confidence 45688999999999999999999999999999999999999999999999998887777666666667777888899999
Q ss_pred hhhHHHH--HHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhcc
Q 000778 549 ETTVLEI--KNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLR 626 (1288)
Q Consensus 549 ~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~l~~ 626 (1288)
+++..++ ..||... +...+|.++. ....++.++++|+|++++||+.+++++.+++
T Consensus 467 ek~~~eii~~dy~~~~--------------------g~e~~~sil~---~p~~~~~la~safg~~~~Ylk~~~id~~lls 523 (1125)
T KOG0217|consen 467 EKTGREIISEDYFESL--------------------GLEDSPSILK---SPNTDKELALSAFGGLFYYLKKLLIDEELLS 523 (1125)
T ss_pred hhHHHHHhhhhhhhcc--------------------cccCchhhcc---CCCccchhhHHHHHHHHHHHHHHhhHHHHhh
Confidence 9988754 2343310 1223333332 2233578999999999999999999999999
Q ss_pred cccceecCCCCCccCCCCCceecCHHHHHhcccccccCCCCCcccHHHHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHH
Q 000778 627 FAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQ 706 (1288)
Q Consensus 627 ~~~f~~~~~~~~~~~~~~~~M~LD~~tl~~LEI~~n~~~g~~~gSL~~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~Rl 706 (1288)
+.+|+.|+... ...|+||++||+|||||.|.++|+.+||||.++|+|.||||||||+.|+++||+|.+.|++||
T Consensus 524 m~n~~ey~~~~------~s~mvlD~~tL~NleIf~Ns~~G~~~gtL~~~~~~csTpfGKRllk~Wl~~Pl~~~~~I~~R~ 597 (1125)
T KOG0217|consen 524 MKNFEEYDSLD------QSEMVLDGATLENLEIFSNSRNGGDEGTLFYAVNRCSTPFGKRLLKTWLMAPLCDKEDIKQRQ 597 (1125)
T ss_pred hhhhhhcchhc------ccceeecchhhhhhhhhccCCCCCCchhHHHHHhhccChHHHHHHHHHhhCcCCCHHHHHHHH
Confidence 99999886432 234999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 000778 707 DAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLG 786 (1288)
Q Consensus 707 daVe~L~~~~~~~~~~lr~~Lk~lpDlerll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~ 786 (1288)
|||+.|.. ++..+.++...|+++||+||+|.|+|..+.+ .++++.+|+.+|.+|+.+...+..+.
T Consensus 598 dav~~l~~-~~~~~~~~~e~l~klPDlERlL~Rih~~~~~--------------~~k~i~~f~rvLegfk~~~~~~~~~~ 662 (1125)
T KOG0217|consen 598 DAVDSLGK-APMDRTKVGETLKKLPDLERLLVRIHNGGEK--------------NKKKIADFIRVLEGFKEINKLLGSLI 662 (1125)
T ss_pred HHHHHHhc-CchhHHHHHHHHhhCCcHHHHHHHHHhcCcc--------------chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999986 5666778999999999999999999975432 35789999999999999888877765
Q ss_pred HHHhhcc-hhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000778 787 AILENTE-SRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRK 865 (1288)
Q Consensus 787 ~~l~~~~-s~~l~~l~~~~~~~~~l~~~l~~~~~~~d~~~~~~~g~ii~~~g~d~~ld~~~~~~~~i~~~L~~~l~~~~~ 865 (1288)
..+.... ...+..++ ..+|++..-+..+..+|||+.+.++|.|.|..|++.+||.+...+.++++.|..+|.++++
T Consensus 663 ~v~~~~~~~~~is~~~---~~~p~~~~~i~~~~~af~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~L~~~L~~~rk 739 (1125)
T KOG0217|consen 663 NVLKEGEGLRLISELL---ESMPNLSEEIENWTEAFDRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAENELLAYLEEYRK 739 (1125)
T ss_pred HHHHhhHHHHHHHHHh---cCcchhhHHHHHHHHHHHHHHHhhcCccCCCccccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5443221 22233322 3489999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCceEEEeCCceeeeeccccccCCCCCcEEEEeeecCcEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000778 866 LLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFC 945 (1288)
Q Consensus 866 ~l~~~~i~~~~~~~~~y~i~v~~~~~~~~p~~~~~~ss~~~~~ry~tp~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~ 945 (1288)
.+++.++.|++++++.|+++||.+.....|.+|...++++|..||+||++.++...+.+++++.......+.++++.+|.
T Consensus 740 ~l~c~si~~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~d~~~r~~~~f~ 819 (1125)
T KOG0217|consen 740 RLGCSSIVFVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGVSRYYTPDLRKLIAHLDEAEERKKSSLSDLKRRLIVRFD 819 (1125)
T ss_pred hcCCCceeEeecCceEEEEecCcccCCCCchHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988777888999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEEecCCCCccccccCCCCcccccccccCCCC
Q 000778 946 EHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHG 1025 (1288)
Q Consensus 946 ~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~ 1025 (1288)
+|+..|++++.++|.||||+|+|.+|..+++++|||+|+.... ..+.+.++.+||||+.... .++.|||||+.++...
T Consensus 820 ~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~~d-t~~~l~~~~~~Hpcfsl~s-~~~~fipN~v~~g~~~ 897 (1125)
T KOG0217|consen 820 EHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVESTD-TPGFLIVKGLRHPCFSLPS-TGTSFIPNDVELGGAE 897 (1125)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeecccC-CCceeEEecccCceeecCc-CCCccccchhhccccc
Confidence 9999999999999999999999999999999999999987532 3348999999999998643 3468999999999645
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCC
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSAT 1105 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~ 1105 (1288)
...+.++|||||+|||||||++|.+++|||+||+|||..+.++++|+||+|+|+.|+++.+.|||+.|+.+++.||..++
T Consensus 898 e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~aT 977 (1125)
T KOG0217|consen 898 ENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHAT 977 (1125)
T ss_pred cceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccchhcCCceEEEeccchHHHHhhcC
Confidence 66677799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEee
Q 000778 1106 RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLY 1185 (1288)
Q Consensus 1106 ~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~y 1185 (1288)
+.||||+||+||||++.||.+||.++|++|....+|..+|+||||.++..+..+|.|.++||++++.... +++|+|
T Consensus 978 ~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd~e~----~vtFLY 1053 (1125)
T KOG0217|consen 978 RHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLCVDFMHHPQVRLLHMACVVDEEI----DVTFLY 1053 (1125)
T ss_pred ccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCccccccchhHhhhcCccccchhheeeecCCc----cEEEee
Confidence 9999999999999999999999999999999988999999999999999999999999999999997642 799999
Q ss_pred EecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Q 000778 1186 RLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEAIYG 1226 (1288)
Q Consensus 1186 kl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~~~~le~~~~ 1226 (1288)
++.+|+|++|||+++|++||+|..||++|..++.+|+....
T Consensus 1054 kl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~e~~~~ 1094 (1125)
T KOG0217|consen 1054 KLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHELEKSSA 1094 (1125)
T ss_pred hhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998764
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-138 Score=1323.10 Aligned_cols=840 Identities=33% Similarity=0.470 Sum_probs=688.4
Q ss_pred ccCCCHHHHHHHHHHhhCCCeEEEEeeCceEEEecccHHHHhhhcceeeecCC------CCcCCcCcccHhHHHHHHHHc
Q 000778 324 LRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGE------QPHCGFPERNFSMNVEKLARK 397 (1288)
Q Consensus 324 ~~~~TP~~~QyweiK~~~~D~VlfFkvGkFYEly~~DA~i~ak~L~L~~~~g~------~~~~GfPe~sl~~y~~kLV~~ 397 (1288)
.+++||||||||+||++|||+|||||||||||+|++||+++|++|||++|+++ .||||||+|+++.|+++||++
T Consensus 5 ~~~~TP~~~Qy~~iK~~~~D~ilffr~GdFYElf~eDA~~~s~~L~i~lt~r~~~~~~~~pm~GvP~h~~~~yl~kLv~~ 84 (854)
T PRK05399 5 MSKLTPMMQQYLEIKAQYPDALLFFRMGDFYELFFEDAKKASRLLDITLTKRGKSAGEPIPMAGVPYHAAEGYLAKLVKK 84 (854)
T ss_pred cCCCCHHHHHHHHHHhhCCCEEEEEEcCCEEEEeHhhHHHHHHHhCeEEeeccCCCCCCCCEecCcHHHHHHHHHHHHHC
Confidence 35799999999999999999999999999999999999999999999999753 499999999999999999999
Q ss_pred CCeEEEEeccCChHHHHHHhhhcCCCCceeeeeEEEEeeCcceeeccccCCCCCCcEEEEEEecCCCCCCCCCCCEEEEE
Q 000778 398 GYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGIC 477 (1288)
Q Consensus 398 GyKVavveQ~Et~~~~~~r~~~~g~~~kvv~Rev~~ViTpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~iGva 477 (1288)
|||||||||+|||..+ .++|+|+||+||||||+++++++.. ..++||+||.+.. ..||+|
T Consensus 85 GyKVaI~EQ~e~~~~~----------k~~v~R~v~~i~TpGT~~~~~~l~~-~~~~yl~ai~~~~---------~~~Gia 144 (854)
T PRK05399 85 GYKVAICEQVEDPATA----------KGPVKREVVRIVTPGTVTDEALLDE-KQNNYLAAIAQDG---------GGYGLA 144 (854)
T ss_pred CCEEEEEEecCChhhc----------CCccceEEEEEECCCeeecccccCC-CCCcEEEEEEECC---------CeEEEE
Confidence 9999999999998642 2599999999999999999988764 4688999998742 469999
Q ss_pred EEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhhHHHHHH
Q 000778 478 VVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKN 557 (1288)
Q Consensus 478 ~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~ls~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~ 557 (1288)
|+|++||+|++++| .+++|++.|.+++|+|||++.+..+.. +... ..... ..+...| +.+.+.+.+.+
T Consensus 145 ~~D~stg~~~~~~~----~~~~L~~~l~~~~P~Eil~~~~~~~~~----~~~~--~~~~~-~~~~~~f-~~~~~~~~l~~ 212 (854)
T PRK05399 145 YLDLSTGEFRVTEL----DEEELLAELARLNPAEILVPEDFSEDE----LLLL--RRGLR-RRPPWEF-DLDTAEKRLLE 212 (854)
T ss_pred EEECCCCeEEEEEE----cHHHHHHHHHhcCCcEEEEcCCcchhh----Hhhc--cccce-ecccccc-ChHHHHHHHHH
Confidence 99999999999999 367899999999999999998754332 1111 11111 1122223 66666677777
Q ss_pred HHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhcccccceecCCCC
Q 000778 558 IYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSG 637 (1288)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~l~~~~~f~~~~~~~ 637 (1288)
+|...+ + ..+ .. ....+++|+|+++.||+.+... .+.++..+..
T Consensus 213 ~f~~~~---~-----------------~~~--------~~--~~~~~~~a~~all~Yl~~~~~~-~~~~~~~~~~----- 256 (854)
T PRK05399 213 QFGVAS---L-----------------DGF--------GV--DLPLAIRAAGALLQYLKETQKR-SLPHLRSPKR----- 256 (854)
T ss_pred HhCcCC---c-----------------ccc--------CC--CCHHHHHHHHHHHHHHHHhchh-hhhccCCCEE-----
Confidence 664211 0 001 00 2357899999999999987653 2333333333
Q ss_pred CccCCCCCceecCHHHHHhcccccccCCCCCcccHHHHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCc
Q 000778 638 FGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQ 717 (1288)
Q Consensus 638 ~~~~~~~~~M~LD~~tl~~LEI~~n~~~g~~~gSL~~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~ 717 (1288)
....++|.||++|++|||||.|.. |+.+||||++||||+|+||+|+||+||++||+|++.|++|||+|++|.+ +.
T Consensus 257 ---~~~~~~m~lD~~tl~~Lei~~~~~-~~~~gSL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~-~~ 331 (854)
T PRK05399 257 ---YEESDYLILDAATRRNLELTENLR-GGRKNSLLSVLDRTVTAMGGRLLRRWLHRPLRDREAIEARLDAVEELLE-DP 331 (854)
T ss_pred ---ECCCCEEEcCHHHHHhccCCccCC-CCCCCcHHHHhccCCCcHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHh-CH
Confidence 345679999999999999999875 5567899999999999999999999999999999999999999999995 66
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhH
Q 000778 718 PFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQL 797 (1288)
Q Consensus 718 ~~~~~lr~~Lk~lpDlerll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l 797 (1288)
..+..++..|+++||++|+++|+..+. . ..+++..+..+|..+..+.+ .+....+..+
T Consensus 332 ~~~~~l~~~L~~i~Dlerll~ri~~~~-~--------------~~~dl~~l~~~l~~~~~l~~-------~l~~~~~~~l 389 (854)
T PRK05399 332 LLREDLRELLKGVYDLERLLSRIALGR-A--------------NPRDLAALRDSLEALPELKE-------LLAELDSPLL 389 (854)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcC-C--------------CHHHHHHHHHHHHHHHHHHH-------HHHhcCcHHH
Confidence 778899999999999999999996421 1 12345555555544433322 2222334455
Q ss_pred HhhhcCCCCchhHHHHHHHHHhhhchHhh--cCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEE
Q 000778 798 HHILTPGKGLPAIVSILKHFKDAFDWVEA--NNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYV 875 (1288)
Q Consensus 798 ~~l~~~~~~~~~l~~~l~~~~~~~d~~~~--~~~g~ii~~~g~d~~ld~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~~~ 875 (1288)
..+.. .++.+.++++.+..+||.... ..++.+ +++|++++||.+++.++++++++.++.++.++.++.+++++.
T Consensus 390 ~~l~~---~l~~~~~l~~~i~~~i~~~~~~~~~~~~~-i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 465 (854)
T PRK05399 390 AELAE---QLDPLEELADLLERAIVEEPPLLIRDGGV-IADGYDAELDELRALSDNGKDWLAELEARERERTGISSLKVG 465 (854)
T ss_pred HHHHh---hcccHHHHHHHHHHHHccCCchhcccCCE-ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEE
Confidence 55543 245677777888888875321 123444 489999999999999999999999999888888888878887
Q ss_pred EeCCceeeeeccccccCCCCCcEEEEeeecCcEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000778 876 TIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMV 955 (1288)
Q Consensus 876 ~~~~~~y~i~v~~~~~~~~p~~~~~~ss~~~~~ry~tp~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~ 955 (1288)
..+..+|+|+||......+|++|+..+++++..||+||+++++++++.++++++...+.+++.+++..+.++...|..++
T Consensus 466 ~~~~~gy~iev~~~~~~~vp~~~~~~~s~~~~~rf~t~~l~~l~~~l~~~~~~~~~~e~~i~~~l~~~i~~~~~~l~~~~ 545 (854)
T PRK05399 466 YNKVFGYYIEVTKANLDKVPEDYIRRQTLKNAERYITPELKELEDKILSAEEKALALEYELFEELREEVAEHIERLQKLA 545 (854)
T ss_pred EcCceeEEEEEEcchhhhCChhhhheeeccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEec
Q 000778 956 AATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGP 1035 (1288)
Q Consensus 956 ~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGp 1035 (1288)
+++++|||++|||.+|.. .+||||+|.+. +.|.|++||||+++.. +..+.|||||+.|+. .+++++||||
T Consensus 546 ~~la~lD~l~s~A~~a~~--~~~~~P~~~~~-----~~l~i~~~rHP~le~~-~~~~~~vpnd~~l~~--~~~~~iiTGp 615 (854)
T PRK05399 546 KALAELDVLASLAEVAEE--NNYVRPEFTDD-----PGIDIEEGRHPVVEQV-LGGEPFVPNDCDLDE--ERRLLLITGP 615 (854)
T ss_pred HHHHHHHHHHHHHHHHHH--CCccccEEeCC-----CCEEEEeccCcEEecc-cCCCceEecceeeCC--CCcEEEEECC
Confidence 999999999999999975 47999999853 4699999999999852 235679999999983 5789999999
Q ss_pred CCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1036 NMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1036 NgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
||||||||||++|++++|||+||||||..+.++++|+||+|+|+.|++..|.|||++||.+++.|+..+++++|||||||
T Consensus 616 N~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~ 695 (854)
T PRK05399 616 NMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEI 695 (854)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCc
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKS 1195 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s 1195 (1288)
||||++.||.+++++++++|.+..+|++||+|||++++.....+++|.++||++... .++++|+|+|.+|+|++|
T Consensus 696 GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~l~~~~~~v~n~~m~~~~~-----~~~l~flYkl~~G~~~~S 770 (854)
T PRK05399 696 GRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTELEEKLPGVKNVHVAVKEH-----GGDIVFLHKVVPGAADKS 770 (854)
T ss_pred CCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHHHhhhcCCeEEEEEEEEEe-----CCeEEEEEEeCcCCCCCc
Confidence 999999999999999999998876799999999999998877788999999998743 258999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccchhhHHHHHHHHHHHHHhhccccccCccchhhHHHH
Q 000778 1196 YGVNVARLAGIPDKVLQKAVAKSTEFEAIYGKHKKESEENLPADHCVDHMVVLIQSLLNFTANLSCQKSSEGDGVTCLTE 1275 (1288)
Q Consensus 1196 ~g~~vA~~aGlP~~vi~~A~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 1275 (1288)
||++||++||+|++||+||++++.++|+............... ....+ ....++.+++..+......+.+.++.|.+
T Consensus 771 yGi~VA~laGlP~~VI~rA~~i~~~le~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~tp~~a~~~l~~ 847 (854)
T PRK05399 771 YGIHVAKLAGLPASVIKRAREILAQLESASEKAKAASAEEDQL-SLFAE--PEESPLLEALKALDPDNLTPREALNLLYE 847 (854)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhccccccccccccccc-ccccc--cccHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999985311000000000000 00110 01344666677776666666666666777
Q ss_pred HHHHH
Q 000778 1276 LQRQA 1280 (1288)
Q Consensus 1276 l~~~~ 1280 (1288)
|++.+
T Consensus 848 l~~~~ 852 (854)
T PRK05399 848 LKKLL 852 (854)
T ss_pred HHHHh
Confidence 76654
|
|
| >TIGR01070 mutS1 DNA mismatch repair protein MutS | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-138 Score=1314.80 Aligned_cols=776 Identities=32% Similarity=0.475 Sum_probs=653.4
Q ss_pred CCHHHHHHHHHHhhCCCeEEEEeeCceEEEecccHHHHhhhcceeeecC------CCCcCCcCcccHhHHHHHHHHcCCe
Q 000778 327 LSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG------EQPHCGFPERNFSMNVEKLARKGYR 400 (1288)
Q Consensus 327 ~TP~~~QyweiK~~~~D~VlfFkvGkFYEly~~DA~i~ak~L~L~~~~g------~~~~~GfPe~sl~~y~~kLV~~GyK 400 (1288)
+||||||||+||++|||+|||||||||||||++||.++|++|+|++|.+ ++||||||+|+++.|+++||++|||
T Consensus 1 ~TPm~~Qy~~iK~~~~D~iLffr~GdFYElf~eDA~~~a~~L~i~lt~r~~~~~~~~pm~GvP~ha~~~yl~kLv~~G~k 80 (840)
T TIGR01070 1 LTPMMQQYLKLKAEHPDALLFFRMGDFYELFYEDAKKAAQLLDISLTSRGQSADEPIPMAGIPYHAVEAYLEKLVKQGES 80 (840)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCeEEeecCCCCCCCCCcccCCHHHHHHHHHHHHHCCCE
Confidence 6999999999999999999999999999999999999999999999975 2799999999999999999999999
Q ss_pred EEEEeccCChHHHHHHhhhcCCCCceeeeeEEEEeeCcceeeccccCCCCCCcEEEEEEecCCCCCCCCCCCEEEEEEEE
Q 000778 401 VLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVD 480 (1288)
Q Consensus 401 VavveQ~Et~~~~~~r~~~~g~~~kvv~Rev~~ViTpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~iGva~vD 480 (1288)
||||||+|+|... +++|+||||+||||||+++++++.. .+++||+||.+.. ..||+||+|
T Consensus 81 Vai~eQ~e~~~~~----------kg~v~Rev~ri~TpGT~~~~~~l~~-~~~nyl~ai~~~~---------~~~gla~~D 140 (840)
T TIGR01070 81 VAICEQIEDPKTA----------KGPVEREVVQLITPGTVSDEALLPE-RQDNLLAAIAQES---------NGFGLATLD 140 (840)
T ss_pred EEEEEecCCchhc----------CCceeeEEEEEECCCcccccccccC-CCCceEEEEEeCC---------CeEEEEEEE
Confidence 9999999998641 2599999999999999999998864 3678999997421 259999999
Q ss_pred cCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhhHHHHHHHHh
Q 000778 481 VATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYN 560 (1288)
Q Consensus 481 ~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~ls~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~ 560 (1288)
++||+|++++|.|+ ..|.+.|.+++|+|||+|.+..+ .... + +. .| +.......+...|.
T Consensus 141 ~sTG~~~~~~~~d~---~~l~~~l~~~~P~Eil~~~~~~~-~~~~-~--------~~------~f-~~~~~~~~l~~~f~ 200 (840)
T TIGR01070 141 LTTGEFKVTELADK---ETLYAELQRLNPAEVLLAEDLSE-MEAI-E--------LR------EF-RKDTAVMSLEAQFG 200 (840)
T ss_pred ccccEEEEEEecCH---HHHHHHHhccCCeEEEEcCCCCh-HHHH-H--------hH------hc-chhHHHHHHHHhcC
Confidence 99999999999874 36899999999999999876422 2211 1 00 22 33333334444432
Q ss_pred hcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhcccccceecCCCCCcc
Q 000778 561 RITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGD 640 (1288)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~l~~~~~f~~~~~~~~~~ 640 (1288)
... + ..+ . ..+...+++|+|+++.||+.+.... +.++..+..
T Consensus 201 ~~~---l------------------------~~~-~-~~~~~~~~~a~g~ll~Yl~~~~~~~-~~~~~~~~~-------- 242 (840)
T TIGR01070 201 TED---L------------------------GGL-G-LRNAPLGLTAAGCLLQYAKRTQRTA-LPHLQPVRL-------- 242 (840)
T ss_pred ccc---h------------------------hhc-C-CCCCHHHHHHHHHHHHHHHHhChhh-hhhCCCcEE--------
Confidence 100 0 000 0 0123578999999999999875432 323333332
Q ss_pred CCCCCceecCHHHHHhcccccccCCCCCcccHHHHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCchhH
Q 000778 641 MAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFA 720 (1288)
Q Consensus 641 ~~~~~~M~LD~~tl~~LEI~~n~~~g~~~gSL~~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~ 720 (1288)
+..+++|.||++|++|||||.|.+ |+.+||||++||+|+|+||+|+||+||++||+|++.|++|||+|++|.. +..++
T Consensus 243 ~~~~~~m~lD~~t~~~LEl~~~~~-~~~~gSL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~-~~~l~ 320 (840)
T TIGR01070 243 YELQDFMQLDAATRRNLELTENLR-GGKQNTLFSVLDETKTAMGSRLLKRWLHRPLRDREVLEARQDTVEVLLR-HFFLR 320 (840)
T ss_pred ECCCCEEEeCHHHHHhccCCccCC-CCCCCcHHHHHhhcCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHh-CHHHH
Confidence 345679999999999999999886 4578999999999999999999999999999999999999999999986 55677
Q ss_pred HHHHHhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhh
Q 000778 721 LEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHI 800 (1288)
Q Consensus 721 ~~lr~~Lk~lpDlerll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l 800 (1288)
..++..|+++||++|+++|+..+. . ..+++..+..+|..+..+.+. +....+..+..+
T Consensus 321 ~~l~~~L~~i~Dlerll~ri~~~~-~--------------~~~dl~~l~~~l~~~~~l~~~-------l~~~~~~~l~~l 378 (840)
T TIGR01070 321 EGLRPLLKEVGDLERLAARVALGN-A--------------RPRDLARLRTSLEQLPELRAL-------LEELEGPTLQAL 378 (840)
T ss_pred HHHHHHhccCcCHHHHHHHHHcCC-C--------------CHHHHHHHHHHHHHHHHHHHH-------HHhcCcHHHHHH
Confidence 889999999999999999996431 1 134555666665544443322 222233444444
Q ss_pred hcCCCCchhHHHHHHHHHhhhchHhh--cCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeC
Q 000778 801 LTPGKGLPAIVSILKHFKDAFDWVEA--NNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIG 878 (1288)
Q Consensus 801 ~~~~~~~~~l~~~l~~~~~~~d~~~~--~~~g~ii~~~g~d~~ld~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~~~~~~ 878 (1288)
.. .++++.++.+.+..+|+.... ..++.+ +++|+++++|.++..+.++++++.++.++.++.++.+++++....
T Consensus 379 ~~---~l~~~~~l~~~i~~~i~~~~~~~~~~~~~-I~~g~~~~Ld~lr~~~~~~~~~l~~l~~~~~~~~~i~~lk~~~~~ 454 (840)
T TIGR01070 379 AA---QIDDFSELLELLEAALIENPPLVVRDGGL-IREGYDEELDELRAASREGTDYLARLEARERERTGIPTLKVGYNA 454 (840)
T ss_pred HH---hcccHHHHHHHHHHHHhcCCccccccCCe-eCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEec
Confidence 32 355667777777777763211 123333 489999999999999999999999888877777777777776667
Q ss_pred CceeeeeccccccCCCCCcEEEEeeecCcEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 000778 879 KDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAAT 958 (1288)
Q Consensus 879 ~~~y~i~v~~~~~~~~p~~~~~~ss~~~~~ry~tp~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~l 958 (1288)
..+|+|+|+.....++|++|...++.++.+||+||+++++++++.++++++..++.+++.++...+..+.+.|..+++.+
T Consensus 455 ~~gy~iev~~~~~~~vp~~~i~~~s~~~~~rf~tpel~~l~~~l~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~l 534 (840)
T TIGR01070 455 VFGYYIEVTRGQLHLVPAHYRRRQTLKNAERYITPELKEKEDKVLEAEGKILALEKELFEELRELLKKYLEALQEAARAL 534 (840)
T ss_pred CceEEEEEehhhhhcCCcceEEEEeccCceEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCC
Q 000778 959 AELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMG 1038 (1288)
Q Consensus 959 a~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgs 1038 (1288)
++|||++|||.+|..+ +||||+|.+. +.|.|++||||+++.. + ...|||||+.++. ..++++|||||||
T Consensus 535 a~lD~l~s~A~~a~~~--~~~~P~~~~~-----~~i~i~~~RHP~le~~-~-~~~~VpNdi~l~~--~~~~~iITGPNmg 603 (840)
T TIGR01070 535 AELDVLANLAEVAETL--HYTRPRFGDD-----PQLRIREGRHPVVEQV-L-RTPFVPNDLEMAH--NRRMLLITGPNMG 603 (840)
T ss_pred HHHHHHHHHHHHHHHC--CCcCceecCC-----CcEEEEeeECHHHHhc-c-CCCeEeeeeecCC--CccEEEEECCCCC
Confidence 9999999999999754 7999999753 4699999999999852 2 3579999999984 4689999999999
Q ss_pred ChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1039 GKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1039 GKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
|||||||++|++++|||+||||||..+.++++|+||+|+|+.|++..+.||||+||.+++.|+..+++++||||||+|||
T Consensus 604 GKSt~lrqvali~imAq~G~~VPA~~a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrG 683 (840)
T TIGR01070 604 GKSTYMRQTALIALLAQIGSFVPAESAELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRG 683 (840)
T ss_pred CchHHHHHHHHHHHHHhcCCCccchheEeccccEEEEecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHH
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGV 1198 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~ 1198 (1288)
|++.||.+|+++|+++|.+..+|.+||+|||++++......+.|.++||++.... +.++|+|+|.+|.+++|||+
T Consensus 684 T~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l~~~~~~v~n~~~~~~~~~-----~~l~flYkl~~G~~~~Sygi 758 (840)
T TIGR01070 684 TSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTALEESLPGLKNVHVAALEHN-----GTIVFLHQVLPGPASKSYGL 758 (840)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHHhhhCCCeEEEEEEEEEEC-----CcEEEEEEECCCCCCCcHHH
Confidence 9999999999999999987579999999999999988888889999999986543 47999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH
Q 000778 1199 NVARLAGIPDKVLQKAVAKSTEFEAI 1224 (1288)
Q Consensus 1199 ~vA~~aGlP~~vi~~A~~~~~~le~~ 1224 (1288)
+||+++|+|++||+||++++.++|..
T Consensus 759 ~VA~laGlP~~VI~rA~~il~~le~~ 784 (840)
T TIGR01070 759 AVAALAGLPKEVIARARQILTQLEAR 784 (840)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999853
|
|
| >COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-136 Score=1279.09 Aligned_cols=829 Identities=35% Similarity=0.503 Sum_probs=675.2
Q ss_pred ccCCCHHHHHHHHHHhhCCCeEEEEeeCceEEEecccHHHHhhhcceeeecCC-CCcCCcCcccHhHHHHHHHHcCCeEE
Q 000778 324 LRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGE-QPHCGFPERNFSMNVEKLARKGYRVL 402 (1288)
Q Consensus 324 ~~~~TP~~~QyweiK~~~~D~VlfFkvGkFYEly~~DA~i~ak~L~L~~~~g~-~~~~GfPe~sl~~y~~kLV~~GyKVa 402 (1288)
++++||||||||+||++|+|++|||+||+|||+|++||.++|++|+|++|+++ +||||||+|+++.|+++||++|||||
T Consensus 3 ~~~~tP~m~qy~~ik~~~~d~llffr~GdfYelf~~DA~~~s~~l~itlT~r~~~pm~gvP~h~~~~yl~~li~~g~kVA 82 (843)
T COG0249 3 KAKLTPMMQQYLEIKAQYPDTLLFFRMGDFYELFFEDAKIAARLLDITLTKRGNIPMAGVPYHALDYYLAKLIELGYKVA 82 (843)
T ss_pred cccCCcHHHHHHHHHHhCCccEEEEecccchhhhHHHHHHHHHhhCceeecCCCCcCCCCccccHHHHHHHHHhCCCeEE
Confidence 56899999999999999999999999999999999999999999999999876 59999999999999999999999999
Q ss_pred EEeccCChHHHHHHhhhcCCCCceeeeeEEEEeeCcceeeccccCCCCCCcEEEEEEecCCCCCCCCCCCEEEEEEEEcC
Q 000778 403 VVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVA 482 (1288)
Q Consensus 403 vveQ~Et~~~~~~r~~~~g~~~kvv~Rev~~ViTpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~iGva~vD~s 482 (1288)
||||+|+|..+ .++|+|+|++|+||||++|+.++... +++||+||..... . .||+||+|++
T Consensus 83 iceQ~e~~~~~----------k~~v~R~v~rv~TpGt~~d~~~l~~~-~~n~l~a~~~~~~-------~-~~gla~~dls 143 (843)
T COG0249 83 ICEQLEDPAEA----------KGVVERKVVRVVTPGTLTDEALLSDR-ENNYLAALAIDRD-------G-KVGLAFIDLS 143 (843)
T ss_pred EEEcccChhhh----------cCcceeEEEEEECCCeeecccccccc-ccceEEEEEecCC-------C-EEEEEEEEcc
Confidence 99999999752 24999999999999999999988543 6889999986431 1 7999999999
Q ss_pred CCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhhHHHHHHHHhhc
Q 000778 483 TSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRI 562 (1288)
Q Consensus 483 tg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~ls~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~ 562 (1288)
||+|++.+|. +.+|.+.|.+++|+|||++....+........ .+.....+. .+++...+...+..+|...
T Consensus 144 tGef~~~~~~----~~~l~~~l~r~~p~Eil~~~~~~~~~~~~~~~-----~~~~~~~~~-~~f~~~~~~~~l~~~~~~~ 213 (843)
T COG0249 144 TGEFFVSEFE----REKLLSELKRLQPKELLLSESLLSSTLAEIQK-----GLFVVRLPA-SFFDEDDAEEILSEYFGVR 213 (843)
T ss_pred cCeEEEEEee----HHHHHHHHHhCCCcEEEeccccCchhhhhhhh-----ceeeeecch-hhcCccHHHHHHHHHhCcc
Confidence 9999999998 77899999999999999998766543221111 111112222 3445555566666666422
Q ss_pred ccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhcccccceecCCCCCccCC
Q 000778 563 TAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMA 642 (1288)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~l~~~~~f~~~~~~~~~~~~ 642 (1288)
+-. ..+. .....+++|+|+++.|++..+... +.+.. .+....
T Consensus 214 ~l~---------------~~~~--------------~~~~~~~~a~~~ll~Y~~~t~~~~-l~~~~--------~~~~~~ 255 (843)
T COG0249 214 DLD---------------GFGL--------------ISTPLALSAAGALLSYLKDTQKTF-LPHIQ--------IIQRYD 255 (843)
T ss_pred ccc---------------cccc--------------ccchHHHHHHHHHHHHHHHhhhcc-ccccc--------cceeec
Confidence 110 0000 013679999999999997765432 22221 122345
Q ss_pred CCCceecCHHHHHhcccccccCCCCCcccHHHHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 000778 643 KKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE 722 (1288)
Q Consensus 643 ~~~~M~LD~~tl~~LEI~~n~~~g~~~gSL~~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~ 722 (1288)
...+|.||.+|++||||++|.++++.+||||++||+|+|+||+|+|++||++||+|.+.|+.|||+|++|.. +..++..
T Consensus 256 ~~~~m~lD~~t~~nLEl~~~~~~~~~~gSL~~~ld~t~T~mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~-~~~l~~~ 334 (843)
T COG0249 256 LEDYMVLDAATRRNLELFSNLRGNGKKGSLFWLLDRTVTPMGSRLLKRWLLQPLLDKEEIEERLDAVEELKD-NPELREK 334 (843)
T ss_pred cCcEEEEcHHHHhcccccccCCCCCCCCcHHHHhccCCCchhHHHHHHHhhCcccCHHHHHHHHHHHHHHHh-hhHHHHH
Confidence 677999999999999999999877889999999999999999999999999999999999999999999986 4567889
Q ss_pred HHHhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcc-hhhHHhhh
Q 000778 723 FRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTE-SRQLHHIL 801 (1288)
Q Consensus 723 lr~~Lk~lpDlerll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~-s~~l~~l~ 801 (1288)
||..|+++||+||+++|+..+. .+ .+++..+...|..+..+..... ... ...+..+.
T Consensus 335 L~~~L~~v~DleRl~~Rl~~~~-~~--------------~rDl~~l~~~l~~~~~i~~~l~-------~~~~~~~l~~~~ 392 (843)
T COG0249 335 LREMLKKVPDLERLLSRLSLGR-AS--------------PRDLLRLRDSLEKIPEIFKLLS-------SLKSESDLLLLL 392 (843)
T ss_pred HHHHHhcCcCHHHHHHHHHcCC-CC--------------hhhHHHHHHHHHHHHHHHHHHh-------ccccchhhhHHh
Confidence 9999999999999999996542 11 2345555555544444333221 111 11122111
Q ss_pred cCCCCchhHHHHHHHHHhhhchHhhcCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCce
Q 000778 802 TPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDL 881 (1288)
Q Consensus 802 ~~~~~~~~l~~~l~~~~~~~d~~~~~~~g~ii~~~g~d~~ld~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~~~~~~~~~ 881 (1288)
.....++.+.++...+..++...........+++.|++++||..+.......+++.++....+...+..+++....+..+
T Consensus 393 ~~i~~~~~~~e~~~ll~~~i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~~~i~~le~~~r~~~gi~slki~~n~v~G 472 (843)
T COG0249 393 EDIESLDYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWIAKLELEERERTGIKSLKIKYNKVYG 472 (843)
T ss_pred hhhhccccHHHHHHHHHHHhhhcchhhcchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhccce
Confidence 11112343445666666666532221111134689999999999999999999999888777777777765554455579
Q ss_pred eeeeccccccCCCCCcEEEEeeecCcEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000778 882 YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAEL 961 (1288)
Q Consensus 882 y~i~v~~~~~~~~p~~~~~~ss~~~~~ry~tp~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~L 961 (1288)
|+++|+......+|.+|+..++.++..||+||+++++..++..++.++...+.+++.++.+.+..|.+.|+.+..++|+|
T Consensus 473 y~ievt~~~~~~~p~~~ir~qt~kn~~rf~t~el~~~e~~i~~a~~~i~~lE~~l~~~~~~~i~~~~~~l~~~a~aLa~l 552 (843)
T COG0249 473 YYIEVTKSNAKLVPDDYIRRQTLKNAERFTTPELKELEEKLLDAEEKILALEYELFDELREKILAHINELQALAKALAEL 552 (843)
T ss_pred eEEEechhccccCchHHHHHHHHhcceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChh
Q 000778 962 DALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKS 1041 (1288)
Q Consensus 962 D~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKS 1041 (1288)
||++|||..|. ..+||||+|++. ..|.|++||||+++.. +..+ |||||+.|+. .+++++||||||||||
T Consensus 553 D~l~slA~~a~--~~~y~rP~~~~~-----~~l~i~~gRHPvvE~~-~~~~-fVpNd~~L~~--~~~i~lITGPNM~GKS 621 (843)
T COG0249 553 DVLSSLAEIAA--EQNYVRPEFVDS-----NDLEIKEGRHPVVEAV-LDNG-FVPNDIDLSG--NRRIILITGPNMGGKS 621 (843)
T ss_pred HHHHHHHHHHh--hCCCCCceecCC-----CCEEEEecCcchhhhh-ccCC-cccCceeeCC--CceEEEEECCCCCccH
Confidence 99999999996 458999999863 2299999999999963 3333 9999999985 6799999999999999
Q ss_pred HHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1042 TLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1042 TlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
|||||+|++++|||+||||||+.+.++++|+||||+|+.|++..|.||||+||.+++.||..|++.|||||||.||||++
T Consensus 622 TylRQvali~imAQiGsfVPA~~A~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT 701 (843)
T COG0249 622 TYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTST 701 (843)
T ss_pred HHHHHHHHHHHHHHcCCCeeHHHccccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHH
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVA 1201 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA 1201 (1288)
.||.+|||++++||+++.+|.+||+||||+++......+.|.++||...... +.++|+|++.+|.+++|||++||
T Consensus 702 ~DGlaIA~Av~eyL~~~~~~~tLFATHy~ELt~l~~~~~~v~N~h~~~~e~~-----~~i~Fl~kv~~G~a~~SyGi~VA 776 (843)
T COG0249 702 YDGLAIAWAVLEYLHEKIGCRTLFATHYHELTELEEKLPQVKNYHMSAVEEG-----GDITFLYKVKPGIADKSYGIHVA 776 (843)
T ss_pred chhHHHHHHHHHHHHhccCceEEEeccHHHHHHhhhcccccceeEEEEEEcC-----CceEEEEEeccCCCCccHHHHHH
Confidence 9999999999999998779999999999999998888789999999965544 35999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccchhhHHHHHHHHHHHHHhhccccccCcc
Q 000778 1202 RLAGIPDKVLQKAVAKSTEFEAIYGKHKKESEENLPADHCVDHMVVLIQSLLNFTANLSCQKSSEG 1267 (1288)
Q Consensus 1202 ~~aGlP~~vi~~A~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1267 (1288)
++||+|.+||+||++++.++|+... ...... .+ ......+++.+.++.+.-....+.
T Consensus 777 klaGlP~~Vi~rA~~il~~le~~~~----~~~~~~-~~----~~~~~~~~i~~~~~~~~~~~~tp~ 833 (843)
T COG0249 777 KLAGLPEEVIERAREILAELEKESR----SSNLEL-NQ----KDLSLFPKVLKALKSLDPDELTPR 833 (843)
T ss_pred HHhCCCHHHHHHHHHHHHHHhhccc----Ccccch-hh----hhHhHHHHHHHHHHhCChhhcCHH
Confidence 9999999999999999999986432 000000 11 111112266777777766655544
|
|
| >KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-128 Score=1114.44 Aligned_cols=850 Identities=30% Similarity=0.444 Sum_probs=667.7
Q ss_pred cCCCHHHHHHHHHHhhCCCeEEEEeeCceEEEecccHHHHhhhccee-eecCCCCcCCcCcccHhHHHHHHHHcCCeEEE
Q 000778 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFSMNVEKLARKGYRVLV 403 (1288)
Q Consensus 325 ~~~TP~~~QyweiK~~~~D~VlfFkvGkFYEly~~DA~i~ak~L~L~-~~~g~~~~~GfPe~sl~~y~~kLV~~GyKVav 403 (1288)
+++||.+|||.|+|++|.|+||..+||+.|.+|++||+|++++|||. ++.+++..|.||.++++.|+++||++||||||
T Consensus 160 s~yTPLeqQ~~elK~~h~d~VL~ievGYkyRfFgeDAeiasrvLgIych~dhnFmtaS~P~~Rl~vHleRLv~~g~KVaV 239 (1070)
T KOG0218|consen 160 SKYTPLEQQVKELKMHHRDKVLVIEVGYKYRFFGEDAEIASRVLGIYCHNDHNFMTASFPDVRLNVHLERLVHHGLKVAV 239 (1070)
T ss_pred cccCcHHHHHHHHHhhCCceEEEEEecceEEeecccHHHHHHhhceEEEeccceeeccCCcchhhHHHHHHHhcCceEEE
Confidence 47999999999999999999999999999999999999999999996 57788999999999999999999999999999
Q ss_pred EeccCChHHHHHHhhhcCCCCceeeeeEEEEeeCcceeecc--ccCC----CCCCcEEEEEEecCCCCCCCCCCCEEEEE
Q 000778 404 VEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE--LLSA----NPDASYLMALTESNQSPASQSTDRCFGIC 477 (1288)
Q Consensus 404 veQ~Et~~~~~~r~~~~g~~~kvv~Rev~~ViTpGTl~d~~--~l~~----~~~~~yllaI~e~~~~~~~~~~~~~iGva 477 (1288)
|+|+||++-+. ...++..+|.|+|++|||+||+.++. .+.. +..++|++||.+.......+.+...||+.
T Consensus 240 VkQtETAAiKs----~gasRsslF~RklsavyTKaTl~eds~~~~r~e~~~~~~ssfllcv~dn~~ksk~ksg~v~vgli 315 (1070)
T KOG0218|consen 240 VKQTETAAIKS----HGASRSSLFERKLSAVYTKATLGEDSTFVLRGERILGDTSSFLLCVRDNVHKSKEKSGVVKVGLI 315 (1070)
T ss_pred EeehhhHHHHh----cCCcccchHHHHHHHHhhhhhhccccccccchhhhcCCcceEEEEEehhhhhhhhhcCceEEEEE
Confidence 99999987642 23367889999999999999998653 1211 12467999998755433234556789999
Q ss_pred EEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhhH-HHHH
Q 000778 478 VVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTV-LEIK 556 (1288)
Q Consensus 478 ~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~ls~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~-~~l~ 556 (1288)
-|.++||++.+.+|.|+..++.|++.|..++|.|+|++.. +|+.+...+.+.. +-.+......| +-+..+ +.+.
T Consensus 316 gVqlstGevVydeFqdnf~rseLqtrisslqP~ElLl~~~-ls~qt~all~~~~---Vsve~~~~rv~-r~~naV~q~ik 390 (1070)
T KOG0218|consen 316 GVQLSTGEVVYDEFQDNFARSELQTRISSLQPIELLLNTD-LSPQTVALLFKDN---VSVELIHKRVY-RLENAVVQAIK 390 (1070)
T ss_pred EEecCCCcEehHhhhhhHHHHHHHHHHhccCcceeecCCC-CcHHHHHHHHhcc---cchhhhhhhhh-hchhHHHHHHH
Confidence 9999999999999999999999999999999999999854 6777777665421 11111111111 111111 1111
Q ss_pred HHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhcccccceecCCC
Q 000778 557 NIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCS 636 (1288)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~l~~~~~f~~~~~~ 636 (1288)
-.+....+.... + .+ ..+....|+ +++.. +.-.+|.+++++.||....++. ++..++|..
T Consensus 391 la~e~~q~f~~~--k-~~----l~gs~ii~l------i~nl~--~psvic~la~~is~lkefnlE~-~l~~psf~s---- 450 (1070)
T KOG0218|consen 391 LANEKIQNFEDD--K-EM----LEGSEIICL------IMNLS--HPSVICLLAKLISHLKEFNLEQ-VLLIPSFYS---- 450 (1070)
T ss_pred HHHHHHhhhhhh--h-hh----hhhhhhhhh------hhcCC--CchHHHHHHHHHHHHHHhchHH-heecccccC----
Confidence 111110000000 0 00 000000111 22211 2335566999999999976654 444444432
Q ss_pred CCccCCCCCceecCHHHHHhcccccccCCCCCcccHHHHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh--c
Q 000778 637 GFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLR--G 714 (1288)
Q Consensus 637 ~~~~~~~~~~M~LD~~tl~~LEI~~n~~~g~~~gSL~~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~--~ 714 (1288)
......+|.|+++||++||||.|..+|+.+|||||+||||.|.||.|+||.|+.+||.|...|++|+|||+++. .
T Consensus 451 ---~~ss~e~Mtls~ntLq~Leif~nqtd~~~kGSLfwvldhT~TsfG~RmLr~WvtkPLvd~~~I~eRLDAVeeitshs 527 (1070)
T KOG0218|consen 451 ---PFSSKEHMTLSPNTLQSLEIFTNQTDGSEKGSLFWVLDHTRTSFGLRMLREWVTKPLVDVHQIEERLDAVEEITSHS 527 (1070)
T ss_pred ---cccccceeeechhhhhceeeeeecCCCCcccceEEEeccchhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcc
Confidence 23455689999999999999999999999999999999999999999999999999999999999999999993 2
Q ss_pred CCchhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHhhc
Q 000778 715 VNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSL--GAILENT 792 (1288)
Q Consensus 715 ~~~~~~~~lr~~Lk~lpDlerll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l--~~~l~~~ 792 (1288)
.+...+..+++.|.++|||.|-|+||+.+....+ ..++++ ++.+..+...++.+....... ..--...
T Consensus 528 snS~vf~si~~~l~rlpDl~rgL~rIy~~tCtp~---~eff~v-------lk~iy~a~s~fq~~~~~~~~~~~s~~~s~~ 597 (1070)
T KOG0218|consen 528 SNSIVFESINQMLNRLPDLLRGLNRIYYGTCTPR---KEFFFV-------LKQIYSAVSHFQMHQSYLEHFKSSDGRSGK 597 (1070)
T ss_pred cchHHHHHHHHHHHhCcHhHhhHHHHhcccCCcH---HHHHHH-------HHHHHHHHHHHHHHhhhhhhhccccccchh
Confidence 2334667899999999999999999987643211 111111 122222221111110000000 0001123
Q ss_pred chhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCCc--eeeCCCCChhHHHHHHHHHHH------HHHHHHHHHHHH
Q 000778 793 ESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGR--IIPHGGVDMDYDSACKKVKEI------EASLTKHLKEQR 864 (1288)
Q Consensus 793 ~s~~l~~l~~~~~~~~~l~~~l~~~~~~~d~~~~~~~g~--ii~~~g~d~~ld~~~~~~~~i------~~~L~~~l~~~~ 864 (1288)
.|.+|+.+..... -|.+.+.+.+|-.+++..++.+... +...-.-.|.++...+....+ ...|..+|.+.+
T Consensus 598 qS~LLrrlisel~-~p~~~s~~~hfL~mln~~aa~~gnk~d~fkd~snfpl~~e~~di~~virE~~ms~~~~~~hLaeiR 676 (1070)
T KOG0218|consen 598 QSPLLRRLISELN-EPLSTSQLPHFLTMLNVSAAMEGNKDDQFKDFSNFPLYDESEDIIKVIRESEMSRSQLKEHLAEIR 676 (1070)
T ss_pred ccHHHHHHHHHhc-CccccccHHHHHHHhhHHHHhhCChHHhhhhhccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777664311 2566667777777777655433221 111111135566554433322 235777999999
Q ss_pred HHhcCCCceEEEeCCceeeeeccccccCCCCCcEEEEeeecCcEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000778 865 KLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQF 944 (1288)
Q Consensus 865 ~~l~~~~i~~~~~~~~~y~i~v~~~~~~~~p~~~~~~ss~~~~~ry~tp~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~ 944 (1288)
++|..+++.|..+++-.|+|||+....+++|.+|+..++++...||+||+++++..+|...++.........+..++.+|
T Consensus 677 k~Lk~pnlef~~vsgv~flIEvkns~~kkiP~dWiKvnsTk~vsRfhtP~iq~~l~eL~~~~e~L~i~sea~~~sFL~ki 756 (1070)
T KOG0218|consen 677 KYLKRPNLEFRQVSGVDFLIEVKNSQIKKIPDDWIKVNSTKMVSRFHTPRIQKLLQELEYYKELLIIESEAQYKSFLNKI 756 (1070)
T ss_pred HHhcCCCceeEEecCeeEEEEecccccccCCccceeeccceeeeecCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999888899999999999999999999999999999999999988888888999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEEecCCCCccccccCCCCcccccccccCCC
Q 000778 945 CEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGH 1024 (1288)
Q Consensus 945 ~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~ 1024 (1288)
.+|+..|+.+...+|.||||+|||.++. +.+||||+|+++ ...|.|++||||+++. +..+.|||||+.|..
T Consensus 757 SehYtelrkat~~LatlDCi~SlA~~s~--n~nYvRPtfvd~----~~eI~ikngRhPvIe~--Ll~d~fVPNdi~ls~- 827 (1070)
T KOG0218|consen 757 SEHYTELRKATLNLATLDCILSLAATSC--NVNYVRPTFVDG----QQEIIIKNGRHPVIES--LLVDYFVPNDIMLSP- 827 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCccCcccccc----hhhhhhhcCCCchHHH--HhhhccCCCcceecC-
Confidence 9999999999999999999999999997 568999999974 2468999999999985 344569999999997
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhC
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSA 1104 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a 1104 (1288)
+.+++.+||||||||||.|+||+|++.||||+||||||+.+.++++|.||+|||+.|+|..|.|||+.||.++..|+..|
T Consensus 828 egerc~IITGPNMGGKSsyIrQvALitIMAQiGsfVPAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~ka 907 (1070)
T KOG0218|consen 828 EGERCNIITGPNMGGKSSYIRQVALITIMAQIGSFVPAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKA 907 (1070)
T ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCccchHHhhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCC-CceEEeeeEEEEec--CCCCcceE
Q 000778 1105 TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKD-PRVSLCHMACQVGN--GVGGVEEV 1181 (1288)
Q Consensus 1105 ~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~-~~v~~~~~~~~~~~--g~~~~~~l 1181 (1288)
+..|||||||+||||++.||.||++|+|+|+.+...|.+||+|||+.+...-... +.|.++|||.+... +..+.+.+
T Consensus 908 t~~SlvilDElGRGTsThDGiAIsYAtL~yf~~~~k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~sedk~~~d~dsV 987 (1070)
T KOG0218|consen 908 TKRSLVILDELGRGTSTHDGIAISYATLKYFSELSKCLILFVTHFPMLGEIESGFPGQVRNYHMGYLESEDKTGEDWDSV 987 (1070)
T ss_pred ccchhhhhHhhcCCCccccchhHHHHHHHHHHHhhceeEEeeecCcchhhhhcCCCccccceeeeeeeeccccCCCchhh
Confidence 9999999999999999999999999999999998899999999999988765543 36889999998833 23457889
Q ss_pred EEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Q 000778 1182 TFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEAIYG 1226 (1288)
Q Consensus 1182 ~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~~~~le~~~~ 1226 (1288)
+|+|+|+.|.|.+|||++||++|++|.+||.||-.+++++|....
T Consensus 988 tfLYklvrGlasrSyGlnVAklA~ip~sii~rA~siSeeleke~r 1032 (1070)
T KOG0218|consen 988 TFLYKLVRGLASRSYGLNVAKLARIPKSIINRAFSISEELEKESR 1032 (1070)
T ss_pred hhHHHHhhhhhhccccccHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999997654
|
|
| >KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-91 Score=824.49 Aligned_cols=831 Identities=28% Similarity=0.414 Sum_probs=629.2
Q ss_pred CCCHHHHHHHHHHhhC---CCeEEEEeeCceEEEecccHHHHhhhc-----ceeeecCC----CCcCCcCcccHhHHHHH
Q 000778 326 NLSEGQKQWWEFKSKH---MDKVIFFKMGKFYELFEMDAHVGAKEL-----DLQYMKGE----QPHCGFPERNFSMNVEK 393 (1288)
Q Consensus 326 ~~TP~~~QyweiK~~~---~D~VlfFkvGkFYEly~~DA~i~ak~L-----~L~~~~g~----~~~~GfPe~sl~~y~~k 393 (1288)
+-+.+++-|..+=..- -+||.||.+|+||..||+||..+|+.. -++++... ...|.+.-..|...++-
T Consensus 11 ~d~~~~~~f~~f~~~l~~p~~tvr~fdrge~ytv~geDa~~va~~v~kt~~~~k~l~~~~~~~~~~v~ls~~~~e~~vr~ 90 (902)
T KOG0219|consen 11 KDEAADRNFLKFYEGLPKPTTTVRFFDRGEYYTVHGEDAEFVARNVYKTQAVIKTLSPDNAKNTKEVSLSKGNFEKVVRE 90 (902)
T ss_pred ccchhHHHHHHHHhcCCCCCceEEEecCcceEEEeccchhhhhhhhhhhhhhheecCCcccccceEEEecHHHHHHHHHH
Confidence 3455666666655443 389999999999999999999999865 25544321 22344444556666655
Q ss_pred H-HHcCCeEEEEeccCChHHHHHHhhhcCCCCceeeeeEEEEeeCcceeecc-ccCCCCCCc---EEEEEEecCCCCCCC
Q 000778 394 L-ARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE-LLSANPDAS---YLMALTESNQSPASQ 468 (1288)
Q Consensus 394 L-V~~GyKVavveQ~Et~~~~~~r~~~~g~~~kvv~Rev~~ViTpGTl~d~~-~l~~~~~~~---yllaI~e~~~~~~~~ 468 (1288)
| +..+|+|.+++--|+ +|+++.=-+||++.+.+ ++..+.+.. .++.+.-.. .
T Consensus 91 ~l~~~~~~Ve~y~~~~~------------------~w~l~~~~sPGN~~~fedll~~~~~v~is~~~~~v~~~~-----~ 147 (902)
T KOG0219|consen 91 LLLVLRYRVEVYSSNQG------------------DWKLTKRGSPGNLVQFEDLLFSNNDVPISIISLIVKHPG-----V 147 (902)
T ss_pred HHHHhccceEEeecCcc------------------ceeEEecCCCCcHHHHHHHHcccccchhhhhheeEEeec-----c
Confidence 5 479999999974321 25566666999998875 333322211 112222211 2
Q ss_pred CCCCEEEEEEEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccCh
Q 000778 469 STDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDA 548 (1288)
Q Consensus 469 ~~~~~iGva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~ls~~~~~~l~~~~~~~~~~~~~~~~~f~~~ 548 (1288)
.+.+.+|+|++|++.-.+++++|.||..|++|+..|.+++|+|+|++.+....+..++..-..+..++......++|-+
T Consensus 148 ~~~~~vgv~~~d~~~~k~~~~ef~Dn~~~snle~~l~~lg~kEcll~~~~~~~~~~kl~~~~~r~g~~~t~~~~~e~~~- 226 (902)
T KOG0219|consen 148 DGQRRVGVAFVDTINVKIGLSEFVDDDSFSNLEALLIQLGPKECVLPEGSVAGEMKKLRNIIDRCGVLITLRKKSESSW- 226 (902)
T ss_pred CCCceeEEEEechhheeeehhhhcCcHHHHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhccCeEEEEecccchhH-
Confidence 3568899999999999999999999999999999999999999999954333333433222345555555555455422
Q ss_pred hhhHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhcccc
Q 000778 549 ETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFA 628 (1288)
Q Consensus 549 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~l~~~~ 628 (1288)
...+..+.+.+.. . .....+|+. .+..|++++.+++.||.. .++. -+.+
T Consensus 227 kdv~~~l~~~l~~--~-----------------~~~~~~~e~---------~~q~a~~~~~~~i~yl~~--~~e~-~~s~ 275 (902)
T KOG0219|consen 227 KDVEQDLNRLLKS--Q-----------------EHAAYLPEL---------ELQLAMSALSALIKYLDL--ENEY-SNSG 275 (902)
T ss_pred HHHHHHHHhcccc--h-----------------hhhccchHH---------HhHHHHHHHHHHHHHHhh--cccc-cccc
Confidence 2233333333220 0 001123332 347899999999999952 2221 2233
Q ss_pred cceecCCCCCccCCCCCceecCHHHHHhcccccccCC-CCCcccHHH-HHhhhcChHHHHHHHHHhcCCCCCHHHHHHHH
Q 000778 629 KFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRS-GDSSGTLYA-QLNHCVTAFGKRLLRTWLARPLYNSGLIRERQ 706 (1288)
Q Consensus 629 ~f~~~~~~~~~~~~~~~~M~LD~~tl~~LEI~~n~~~-g~~~gSL~~-lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~Rl 706 (1288)
+|++. ......+|.||.+|+++|++|+...+ -....+|.. +||||+|++|.|||++|+.+||+++..|++|+
T Consensus 276 ~~ei~------~~~~~~~m~ld~~av~alnlf~~~~~~~~~s~~L~~~~LN~c~t~~G~rll~~w~~qpL~~~~ri~~r~ 349 (902)
T KOG0219|consen 276 KYELT------NHGLHQFMRLDSAAVRALNLFPLPYNNPEKSNNLALSLLNHCKTLQGERLLRQWLKQPLRDIDRINERH 349 (902)
T ss_pred eEEEe------ecchHHHhhHHHHHHHHHhhcCCCCCCccccchhhHHHHhhcccccchhhhhhhhhcchHHHHHHHHHh
Confidence 55543 23456799999999999999986532 233457887 99999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHH-HhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 000778 707 DAVAGLRGVNQPFALEFR-KALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSL 785 (1288)
Q Consensus 707 daVe~L~~~~~~~~~~lr-~~Lk~lpDlerll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l 785 (1288)
|.|+.|+. +...+..++ +.|..+||+-|+..++.. .+- .++..++.....+..+.+...+
T Consensus 350 d~v~~l~~-~~~~rq~L~~~lL~~~pdi~rl~~~l~~---~~L--------------~d~~r~yq~~~~l~~~~~~l~~- 410 (902)
T KOG0219|consen 350 DLVEALVE-DAEIRQKLRDDLLRRIPDISRLARRLMK---ANL--------------QDVNRIYQAAKLLPTVVQVLIS- 410 (902)
T ss_pred hhHHHHHh-hhHHHHHHHHHHhhcChhHHHhhhhhhh---cch--------------HHHHHHHHHHHHhHHHHHHHHh-
Confidence 99999986 455555554 578999999999999851 110 1111122211122222222111
Q ss_pred HHHHhhcchhhHHh-hhcCCCCchhHHHHHHHHHhhhchHhhcCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 000778 786 GAILENTESRQLHH-ILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQR 864 (1288)
Q Consensus 786 ~~~l~~~~s~~l~~-l~~~~~~~~~l~~~l~~~~~~~d~~~~~~~g~ii~~~g~d~~ld~~~~~~~~i~~~L~~~l~~~~ 864 (1288)
+....+ .++.. +. .....+.+....+...+|++++.+ +.++++..+|+++.++++.+.+++..+.+..++..
T Consensus 411 --~~~~~~-~ll~~~l~---~~~~~~~kf~~~ve~t~D~da~ee-~ey~VR~eFdeeL~eLrq~LdeL~~~m~~~hkrv~ 483 (902)
T KOG0219|consen 411 --LSESHN-RLLKSPLT---EHLKKLEKFQEMVETTVDLDAEEE-NEYRVRVDFDEELQELREKLDELERKMEKLHKKVS 483 (902)
T ss_pred --hhhhhh-hhhhhhhh---hhhhhHHHHHHHHHHHhhHhHHhc-CcEEEecccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 11111 11 112244556666778888877765 88888999999999999999999999998887776
Q ss_pred HHhcC---CCceEEEeCCceeeeeccccccCCC--CCcEEEEeeecCcEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000778 865 KLLGD---TSITYVTIGKDLYLLEVPESLRGSV--PRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQR 939 (1288)
Q Consensus 865 ~~l~~---~~i~~~~~~~~~y~i~v~~~~~~~~--p~~~~~~ss~~~~~ry~tp~l~~l~~~l~~~~~~~~~~~~~il~~ 939 (1288)
..++. .+++.-.....+|++.+.....+.+ .++|+..++.||+++|+|.+|..+|+++...+.++...+..+.++
T Consensus 484 ~dl~~D~~kklkLe~~~~~G~~~RlTr~e~~~LR~~k~y~eLstqK~GV~FTtk~L~slN~e~~~~qk~Y~~~Q~~ivre 563 (902)
T KOG0219|consen 484 ADLGLDPKKQLKLENSAQFGWYFRVTRKEEKVLRKKKNYTELSTQKGGVKFTTKKLSSLNDEFMSLQKEYDEAQNEIVRE 563 (902)
T ss_pred hhcCCCcccceeeeccchhheeeeeeehhhhHhhccCCceEEEEeeCcEEEEhhhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55543 2455556667788888876433333 368999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEEecCCCCccccccCCCCccccccc
Q 000778 940 LIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDI 1019 (1288)
Q Consensus 940 l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi 1019 (1288)
++.....|.+.+..+...+|.|||+.|||++|.....+|+||.+.+.+ ...+.++++|||+++.+ ..-.|||||+
T Consensus 564 vikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~g---s~rl~l~~~rHp~lE~Q--d~~~fIpNdv 638 (902)
T KOG0219|consen 564 IIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLG---SKRLELKQSRHPVLEGQ--DEIPFIPNDV 638 (902)
T ss_pred HHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccc---hhHHHHHhcccchhhcc--ccCCCCCCcc
Confidence 999999999999999999999999999999998778899999999864 34689999999999864 2347999999
Q ss_pred ccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHH
Q 000778 1020 TIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETAL 1099 (1288)
Q Consensus 1020 ~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~ 1099 (1288)
.|.. .++++++||||||+||||++|+.|.+++|||+||||||+.+.++++|.|++|.|+.|++.+|.||||.||.+++.
T Consensus 639 ~le~-~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D~q~kG~STFM~Emleta~ 717 (902)
T KOG0219|consen 639 VLEK-GKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGDSQLKGISTFMAEMLETAS 717 (902)
T ss_pred cccc-CCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccchhhhcchHHHHHHHHHHHH
Confidence 9997 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCCCcc
Q 000778 1100 MLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVE 1179 (1288)
Q Consensus 1100 il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~ 1179 (1288)
|++.+++.||||+|||||||++.||..+||+|-+|++.+.||.+||+||+|++.......+.|.++||+..+.+ +
T Consensus 718 Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt~lae~~~~vKn~h~~a~i~~-----~ 792 (902)
T KOG0219|consen 718 ILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELTKLAEQLPTVKNLHVTAQIEN-----D 792 (902)
T ss_pred HHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhhhhhhhhhheeeeEecC-----c
Confidence 99999999999999999999999999999999999999999999999999999998888899999999999875 5
Q ss_pred eEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccchhhHHHHHHHHHHHHHhhc
Q 000778 1180 EVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEAIYGKHKKESEENLPADHCVDHMVVLIQSLLNFTANL 1259 (1288)
Q Consensus 1180 ~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1259 (1288)
+++.+|++.+|+|+.|||++||+++|||+.||+.|+.+++++|+.-..+..++ -....+..+.+++++..+++.+
T Consensus 793 ~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~~~~e~k~-----kKe~l~~~~~~~~~~~skvk~~ 867 (902)
T KOG0219|consen 793 DITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELEDELVIKESKE-----KKELLERAQVIIQEWLSKVKNV 867 (902)
T ss_pred chhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHHHHHhhhhhhh-----HHHHHHHHHHHHHHHHhcchhH
Confidence 78999999999999999999999999999999999999999987543211111 1111223334666666666665
|
|
| >KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-75 Score=679.08 Aligned_cols=698 Identities=24% Similarity=0.329 Sum_probs=539.4
Q ss_pred CcEEEEEEecCCCCCCCCCCCEEEEEEEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhhc
Q 000778 452 ASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHT 531 (1288)
Q Consensus 452 ~~yllaI~e~~~~~~~~~~~~~iGva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~ls~~~~~~l~~~~ 531 (1288)
...++||.|+++. ...+||+|.+|+.++++++++|.|+..|.++.+.|.-+.|-||+++....-....+++....
T Consensus 103 ~~v~~~v~e~r~~-----~~~~Ig~~~~~~~~~q~~l~~f~dst~y~~v~~~l~i~s~~ei~i~~~~~a~~~skl~~~~~ 177 (867)
T KOG0220|consen 103 PSVIVAVVEGRGL-----ARGEIGMASIDLKNPQIILSQFADSTTYAKVITKLKILSPLEIIISNTACAVGNSKLLFTLI 177 (867)
T ss_pred CceEEEEEecCCc-----ccceeEEEEecCCCCceehhhhhccchhHHHHhHhhccChhheeecccccccchHHHHHHHH
Confidence 4588999998764 46789999999999999999999999999999999999999999998765544444432211
Q ss_pred --CCCccccccCCccccChhhhHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHH
Q 000778 532 --RNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALG 609 (1288)
Q Consensus 532 --~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Alg 609 (1288)
..+-++-.--...++..+++++.+..++....+ -++.+++ ++.++++|+|
T Consensus 178 ~e~~~~v~~~~~s~k~fns~~gl~~i~~~~~~~~s------------------------~vle~i~----~k~~al~a~a 229 (867)
T KOG0220|consen 178 TENFKNVNFTTISRKYFNSTKGLEYIEQLCIAEFS------------------------TVLEEIQ----SKTYALGAAA 229 (867)
T ss_pred hhcccccceeehhhhhcCchhhHHHHHHHHhhhhH------------------------HHHHHHH----HHHHHHHHHH
Confidence 001111011123455677777777766543111 1233343 4689999999
Q ss_pred HHHHHHHHhccchhhcccccceecCCCCCccCCCCCceecCHHHHHhcccccccCCCCCcccHHHHHhhhcChHHHHHHH
Q 000778 610 GTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLR 689 (1288)
Q Consensus 610 all~YL~~~~l~~~l~~~~~f~~~~~~~~~~~~~~~~M~LD~~tl~~LEI~~n~~~g~~~gSL~~lLn~t~T~~GkRlLr 689 (1288)
++++|++.... .+... ..+ .+......+.|.||..+..+|||+.|.. -....+|++++|+|.|++|.|.||
T Consensus 230 ~llky~~~~~~--~~~~~---~sl---ri~~~gs~nT~~id~~~~~~lelV~~~~-~kn~~~l~~vl~~T~t~~g~r~lR 300 (867)
T KOG0220|consen 230 ALLKYVEEIQS--SVYAP---KSL---RICFQGSENTAMIDSSSAQSLELVINNQ-YKNNHTLFGVLNYTKTPGGYRRLR 300 (867)
T ss_pred HHHHHHHHHHH--hhhcc---cee---EEEeecccceeeeecccccceEEechhh-hhcccceeeeeeeeecccchhhHH
Confidence 99999997543 12111 111 1223345679999999999999999874 334569999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhcCCCCCHHHHHHHHhccccccC-CCCccchhhHHHHHHHHHHH
Q 000778 690 TWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANG-RNSNKVVLYEDAAKKQLQEF 768 (1288)
Q Consensus 690 ~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr~~Lk~lpDlerll~ri~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 768 (1288)
..+++||+|...|+.|++++++|.. +.++...+|..|++++|++++++++........ ......+. .+..+
T Consensus 301 ssilqpl~d~~ti~~rleaiqeL~a-~~~L~~~Lr~~~k~~~dld~~~s~~~~~~~~~~i~~~~s~I~-------~~~~L 372 (867)
T KOG0220|consen 301 SSILQPLTDIETINMRLEAIQELLA-DEELFFGLRSVIKRFLDLDQLLSVLVQIPTQDTVNAAESKIN-------NLIYL 372 (867)
T ss_pred hhhcccccchhhhhHHHHHHHHHhc-CchHhhhhHHHHhhhhhHHHHHHHHHhhhhHHhhhcchhHHH-------HHHHH
Confidence 9999999999999999999999997 567788899999999999999998864321100 00000000 01111
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchH--------hhcCCCceeeCCCCCh
Q 000778 769 ISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWV--------EANNSGRIIPHGGVDM 840 (1288)
Q Consensus 769 ~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~~~~~~d~~--------~~~~~g~ii~~~g~d~ 840 (1288)
..+|. ....+...+.+..+..+....... ..+.+..+.+.+.+.||-. ...++..+.++.+++.
T Consensus 373 k~tL~-------lv~~~~~al~~~~s~~~~e~~~~~-~~~r~~~i~~~i~e~I~dd~l~a~~~l~~~~qkcyAvks~i~~ 444 (867)
T KOG0220|consen 373 KHTLE-------LVDPLKIALKNCNSNLLREYYGSF-KDKRFGIILEKIKEVINDDALYAKGCLNLRTQKCYAVKSNING 444 (867)
T ss_pred HHHHH-------HHHHHHHHHhhchhHHHHHHHHHh-cchHHHHHHHHHHHHhhHHHHhccchhhhhccceeeecccccH
Confidence 11111 111111111111122222111100 1123333344444444321 1234455678999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCceeeeecccc----ccCCCCCcEEEEeeecCcEEEeChHHH
Q 000778 841 DYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPES----LRGSVPRDYELRSSKKGFFRYWTPNIK 916 (1288)
Q Consensus 841 ~ld~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~~~~~~~~~y~i~v~~~----~~~~~p~~~~~~ss~~~~~ry~tp~l~ 916 (1288)
.+|-+|+.+.++.....+.+.+..... ...+.+......||++.++.. ....+|..|+..+..+++++|+|-.+.
T Consensus 445 ~LDiaR~ty~ei~~~~~~~i~~l~E~~-~~nl~~~f~sarGF~~ri~~~~~~~~~~~lP~~fi~~~~~~~~~~~~s~~~i 523 (867)
T KOG0220|consen 445 FLDIARRTYTEIVDDIAGMISQLGEKF-SLNLRLSFSSARGFFIRITTDCIALPSDTLPSEFIKISKVKNSYSFTSADLI 523 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-CccccccccccccEEEEeeccccccccccCchhhhhhhhhcceeeechHHHH
Confidence 999999999998887777666665554 334444444456788877765 245789999999989999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEE
Q 000778 917 KLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISA 996 (1288)
Q Consensus 917 ~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i 996 (1288)
+++.++.+.-.++......++..+++.+.+|.+.+..+.++++.||+|+|||++.... .||||+|++ .+.|
T Consensus 524 k~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~~--~y~~P~fT~-------slaI 594 (867)
T KOG0220|consen 524 KMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTLS--DYVRPEFTD-------SLAI 594 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccc--cccccccCC-------ceee
Confidence 9999999999999999999999999999999999999999999999999999998743 899999985 2899
Q ss_pred ecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHh
Q 000778 997 KSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVR 1076 (1288)
Q Consensus 997 ~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ 1076 (1288)
++||||+|+.. ..+++|-||+.++. ..++.+||||||+||||||||+|+++||||+||||||..+.+++|++||+|
T Consensus 595 ~qGRHPILe~i--~~ek~i~N~t~~t~--~s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IPA~YaS~pIf~RIFtR 670 (867)
T KOG0220|consen 595 KQGRHPILEKI--SAEKPIANNTYVTE--GSNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVPAEYASFRVFKRIFTR 670 (867)
T ss_pred ccCCCchhhhh--cccCcccCcceeec--ccceEEEECCCCCcchHHHHHHHHHHHHHHhccCcchhhccchHHHHHHHH
Confidence 99999999963 46679999999985 468999999999999999999999999999999999999999999999999
Q ss_pred cCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhh
Q 000778 1077 MGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDY 1156 (1288)
Q Consensus 1077 ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~ 1156 (1288)
||..|++..+.|+|+.||+++|.|+..++..+||+|||+||||++.||.++.||+.|++++ .+.+++|+||+++++...
T Consensus 671 mg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TSteeGiaityAvCE~lL~-LkayTflATHFldIa~la 749 (867)
T KOG0220|consen 671 MGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEEGIAITYAVCEYLLS-LKAYTFLATHFLDIAAIA 749 (867)
T ss_pred hcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCccccchhhHHHHHHHHHH-hhHhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999987 488999999999999999
Q ss_pred cCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCC-CCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Q 000778 1157 KKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGAC-PKSYGVNVARLAGIPDKVLQKAVAKSTEFEAIYG 1226 (1288)
Q Consensus 1157 ~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~-~~s~g~~vA~~aGlP~~vi~~A~~~~~~le~~~~ 1226 (1288)
...|.|.++|+-.+..+.. .....|+|..|.. +..||+.+|++.-+|++|++.|+..+-++.+.+.
T Consensus 750 n~~paVdnlHF~~q~~eNs----sk~~k~kLsrg~~~~~~yG~~~vE~s~iPd~i~e~a~~~~t~i~A~v~ 816 (867)
T KOG0220|consen 750 NYYPAVDNLHFLVQTDENS----SKNKKYKLSRGLTEEKNYGLKAAEVSSLPDSIVEDAKEITTQITAQIL 816 (867)
T ss_pred hcCccccceeeeeeecccc----hhhhhhhhhhhhhhcccccceEEEEecCCHHHHHhhhHHHHHHHHHHH
Confidence 9999999999998776542 2223699999876 6789999999999999999999999888876654
|
|
| >KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-69 Score=616.43 Aligned_cols=585 Identities=27% Similarity=0.415 Sum_probs=478.4
Q ss_pred hhHHHHHHHHHHHHHHHhccchhhcccccceecCCCCCccCCCCCceecCHHHHHhcccccccCCC-------CCcccHH
Q 000778 601 GSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSG-------DSSGTLY 673 (1288)
Q Consensus 601 ~~~al~Algall~YL~~~~l~~~l~~~~~f~~~~~~~~~~~~~~~~M~LD~~tl~~LEI~~n~~~g-------~~~gSL~ 673 (1288)
...+..|+|+++.+|.+..+...+..+ +|+ -|+.++..+...+.|.||-+|+.+|+||+....- +..-|||
T Consensus 193 i~~~~r~~g~ll~fl~~~rigv~l~~~-~v~-~pI~gik~f~l~~lv~iD~nTisaL~Ifp~e~~~~~~k~~~~~g~Slf 270 (849)
T KOG0221|consen 193 IEAVVRALGGLLKFLGRRRIGVELEDY-NVS-VPILGIKKFMLTHLVNIDQNTISALQIFPSESHPSKVKSGLKEGLSLF 270 (849)
T ss_pred hHHHHHhhhhHHhhcccceeeeeeccc-ccc-ccccceeEEeecceeeeccchHHHHHhcccccccchhhhhhhcchhHH
Confidence 467789999999999987765443322 222 2445566667778999999999999999876431 1123999
Q ss_pred HHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc-CCchhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCc
Q 000778 674 AQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRG-VNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSN 752 (1288)
Q Consensus 674 ~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~-~~~~~~~~lr~~Lk~lpDlerll~ri~~~~~~~~~~~~ 752 (1288)
+++|+|.+..|+|+||.|+.+|++|..+|..||++|.+|.. .|.+....|.+.|+++||+--++.|+.++...
T Consensus 271 ~l~n~c~s~~g~k~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~qNa~~~~~Ls~~lgr~k~~~~~~~~~~sg~t~------ 344 (849)
T KOG0221|consen 271 GLLNRCHSKWGEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQMLSRLLGRIKNVPLILKRMKSGHTK------ 344 (849)
T ss_pred HHHHHHhhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcccHHHHHHHHhcCCce------
Confidence 99999999999999999999999999999999999999863 46677788999999999999999999654321
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCCce
Q 000778 753 KVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRI 832 (1288)
Q Consensus 753 ~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~~~~~~d~~~~~~~g~i 832 (1288)
+. .+.-+.+++...-.+.++|.+++.-.+ +..... ...+.++.+++..+...+|+..+..++++
T Consensus 345 -l~--------~W~~~~stv~~~~~i~~~~rslp~s~~------~~~~~~-~~~~~~l~eia~~~g~vIdF~~S~~~~r~ 408 (849)
T KOG0221|consen 345 -LS--------DWQVLYSTVYSALGIRDACRSLPQSIQ------LFRDIA-QEFSDDLHEIASLIGKVIDFEGSLAENRF 408 (849)
T ss_pred -ec--------hHHHHHHHHHHHHHHHHHHHhCccchh------hhhHHH-HHHHHHHHHHHHHhhheeccccccccceE
Confidence 22 223334444433445555655432111 110000 01134566777778889999999999999
Q ss_pred eeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCceEEEeCCceeeeeccccccCCCCCc----EEEEeeecC
Q 000778 833 IPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGD--TSITYVTIGKDLYLLEVPESLRGSVPRD----YELRSSKKG 906 (1288)
Q Consensus 833 i~~~g~d~~ld~~~~~~~~i~~~L~~~l~~~~~~l~~--~~i~~~~~~~~~y~i~v~~~~~~~~p~~----~~~~ss~~~ 906 (1288)
.+.+|+|+++|+.|..|..++..|.+..++....|.. +++..+++...+|++.||.-......++ |........
T Consensus 409 Tv~~giD~elDE~r~~y~~lp~~Lt~vAr~e~~~L~~~~psv~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf~s~E 488 (849)
T KOG0221|consen 409 TVLPGIDPELDEKRRRYMGLPSFLTEVARKELENLDSRIPSVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFLSEE 488 (849)
T ss_pred EecCCCChHHHHHHHHHccchHHHHHHHHHHHHhhCCCCCceeEEEeeceeeEEecccccchhhcCCcccchHHHhcccc
Confidence 9999999999999999999999998888776555543 5677888888999999987543222233 666666777
Q ss_pred cEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCC
Q 000778 907 FFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDS 986 (1288)
Q Consensus 907 ~~ry~tp~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~ 986 (1288)
..+|++....+|.+.+.++..++...+..|+-.|-.++......+.++...+++||+|+|||.+|..+ +|.||.++++
T Consensus 489 ~l~~rnart~eLD~~~GDIy~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~~--gy~~P~lv~e 566 (849)
T KOG0221|consen 489 KLHYRNARTKELDALLGDIYCEIRDQETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAADY--GYSRPRLVPE 566 (849)
T ss_pred eeEeecccHHhHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCccccH
Confidence 78999999999999999998888888888999999999999999999999999999999999999754 7999999973
Q ss_pred CCCCCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccc
Q 000778 987 CSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFE 1066 (1288)
Q Consensus 987 ~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~ 1066 (1288)
.-.+.|.+||||+++. ....||||++..+. ++|++.+|||||.||||.|||+++++++|||+||||||+.|+
T Consensus 567 ----~~il~I~ngrh~l~e~---~~dtfvPNst~igg-dkgri~vITGpNasGKSiYlkqvglivfLahIGsFVPAe~A~ 638 (849)
T KOG0221|consen 567 ----VLILRIQNGRHPLMEL---CADTFVPNSTEIGG-DKGRIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVPAEEAE 638 (849)
T ss_pred ----HHHHHHHcCChhHHHH---HHHhcCCCceeecC-CCceEEEEeCCCCCCceEEEeechhhhHHHhhccccchhhhh
Confidence 2347899999999874 34689999999998 789999999999999999999999999999999999999999
Q ss_pred cchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCc--EEE
Q 000778 1067 ISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQC--RGL 1144 (1288)
Q Consensus 1067 l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~--~vl 1144 (1288)
++++|+||+||+.-+.+..++|||+..+.+++.+++.||..||+|+||.|.||++.||.++..+++.|+..+..+ +|+
T Consensus 639 IGivDrI~tri~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~~rg~~~Prif 718 (849)
T KOG0221|consen 639 IGIVDRIFTRIHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLARGPTCPRIF 718 (849)
T ss_pred cchHHHHHHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHHhcCCCCCeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876433 688
Q ss_pred EEcCCchhhhhhcC--CCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 000778 1145 FSTHYHRLAVDYKK--DPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFE 1222 (1288)
Q Consensus 1145 ~~TH~~~l~~~~~~--~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~~~~le 1222 (1288)
++||+|++..+..- .+-+.++.|.....+| +.++|+|++.+|....|||+++|+.+|+|++||.||++++..++
T Consensus 719 vcThfheL~ne~~L~~n~i~qfltm~vlr~~g----e~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~Ra~~v~~ai~ 794 (849)
T KOG0221|consen 719 VCTHFHELVNEQLLPQNPIVQFLTMEVLREDG----EDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKEVSDAIR 794 (849)
T ss_pred EeccHHHhhhhccCCcchhhhhhhHHHHHhcc----CCeEEEEEeccchhhhcccchhHhhcCCCHHHHHHHHHHHHHHH
Confidence 89999999876442 3334455554433333 68999999999999999999999999999999999999999887
Q ss_pred H
Q 000778 1223 A 1223 (1288)
Q Consensus 1223 ~ 1223 (1288)
.
T Consensus 795 s 795 (849)
T KOG0221|consen 795 S 795 (849)
T ss_pred c
Confidence 4
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-66 Score=654.62 Aligned_cols=532 Identities=21% Similarity=0.312 Sum_probs=430.7
Q ss_pred HHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCcc
Q 000778 674 AQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNK 753 (1288)
Q Consensus 674 ~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr~~Lk~lpDlerll~ri~~~~~~~~~~~~~ 753 (1288)
.+-++|.|++|+|+|++ ++|+.|++.|+.||+.|+++.. .........|++++|+++++.|+..+..
T Consensus 17 ~l~~~~~t~~Gk~~l~~--l~P~~~~~~i~~~l~~~~e~~~---~~~~~~~~~l~~~~Di~~~l~r~~~g~~-------- 83 (782)
T PRK00409 17 QLKTFAASELGKEKVLQ--LDPETDFEEVEELLEETDEAAK---LLRLKGLPPFEGVKDIDDALKRAEKGGV-------- 83 (782)
T ss_pred HHHhHcCCHHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHH---HHHhcCCCCCCCCccHHHHHHHHhCCCC--------
Confidence 34478999999999999 5899999999999999998862 1122334468899999999999964221
Q ss_pred chhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCCcee
Q 000778 754 VVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRII 833 (1288)
Q Consensus 754 ~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~~~~~~d~~~~~~~g~ii 833 (1288)
+ ...+|.++...|..+..+........ +....+.|..++. .++.+.++.+.|..+|| .+|.+
T Consensus 84 --l----~~~eL~~i~~~l~~~~~l~~~l~~~~---~~~~~~~L~~~~~---~l~~~~~l~~~i~~~id-----~~g~i- 145 (782)
T PRK00409 84 --L----SGDELLEIAKTLRYFRQLKRFIEDLE---EEEELPILEEWVA---KIRTLPELEQEIHNCID-----EEGEV- 145 (782)
T ss_pred --C----CHHHHHHHHHHHHHHHHHHHHHHhcc---cccchhHHHHHHH---cCcCcHHHHHHHHHHhC-----CCCEE-
Confidence 1 13466677777766555443322110 0011234444443 34566677778888886 34544
Q ss_pred eCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceEEEeCCceeeeeccccccCCCCCcEEEEeeecCcEEE
Q 000778 834 PHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGD---TSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRY 910 (1288)
Q Consensus 834 ~~~g~d~~ld~~~~~~~~i~~~L~~~l~~~~~~l~~---~~i~~~~~~~~~y~i~v~~~~~~~~p~~~~~~ss~~~~~ry 910 (1288)
++|++++|+.++..+.+++.++.+.+.+.....+. -+..++++++++|+|+|+.+.++.+|+.|+..+ .+|.++|
T Consensus 146 -~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~~~~~~~L~d~~it~r~~r~~i~vk~~~~~~~~g~v~~~s-~sg~t~y 223 (782)
T PRK00409 146 -KDSASEKLRGIRRQLRRKKSRIREKLESIIRSKSLQKYLQDTIITIRNDRYVLPVKAEYKHAIKGIVHDQS-SSGATLY 223 (782)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEECCEEEEEechhhhccCCCceeeEE-CCCCEEE
Confidence 89999999999999999999888888765432221 122477889999999999999999998887765 6888999
Q ss_pred eChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCCCCC
Q 000778 911 WTPN-IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSN 989 (1288)
Q Consensus 911 ~tp~-l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~ 989 (1288)
++|. +.++++++.+++.++..++.+|+.+|...+.++...|..+.+++++|||++|+|.+|..+ +||+|.|++.
T Consensus 224 ~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~--~~~~P~~~~~--- 298 (782)
T PRK00409 224 IEPQSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDELDFIFARARYAKAL--KATFPLFNDE--- 298 (782)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCccceEcCC---
Confidence 9998 999999999999999999999999999999999999999999999999999999999865 6999999752
Q ss_pred CCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccc-cccc
Q 000778 990 EEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-FEIS 1068 (1288)
Q Consensus 990 ~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~-~~l~ 1068 (1288)
..|.|+++|||+++. ..+||||+.++. .+++++|||||||||||+||+|+++++|||+|+||||.. +.++
T Consensus 299 --~~i~l~~~rHPll~~-----~~~Vpndi~l~~--~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~ 369 (782)
T PRK00409 299 --GKIDLRQARHPLLDG-----EKVVPKDISLGF--DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIP 369 (782)
T ss_pred --CcEEEcCcCCceecc-----CceECceeEECC--CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcccc
Confidence 469999999999964 369999999985 468999999999999999999999999999999999986 7999
Q ss_pred hHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcC
Q 000778 1069 PVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTH 1148 (1288)
Q Consensus 1069 ~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH 1148 (1288)
+||+||+++|..|++..+.|+|+.+|.+++.|+..+++|+||||||||+|||+.+|.+++.++++++.+. ++++||+||
T Consensus 370 ~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~-~~~vIitTH 448 (782)
T PRK00409 370 VFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKR-GAKIIATTH 448 (782)
T ss_pred ccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999765 899999999
Q ss_pred CchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHH----HHHHH
Q 000778 1149 YHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKST----EFEAI 1224 (1288)
Q Consensus 1149 ~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~~~----~le~~ 1224 (1288)
|++++..+.+++.|.++++.. +.+++.|+|+|..|.+++|||++||+++|+|++||++|+++.. +++..
T Consensus 449 ~~el~~~~~~~~~v~~~~~~~-------d~~~l~~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~l 521 (782)
T PRK00409 449 YKELKALMYNREGVENASVEF-------DEETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGEDKEKLNEL 521 (782)
T ss_pred hHHHHHHHhcCCCeEEEEEEE-------ecCcCcEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHH
Confidence 999999999888888887763 3467999999999999999999999999999999999997543 34444
Q ss_pred hhh----hhccccccccccchhhHHHHHHHHHHHHHhhcc
Q 000778 1225 YGK----HKKESEENLPADHCVDHMVVLIQSLLNFTANLS 1260 (1288)
Q Consensus 1225 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1260 (1288)
+.+ ++..+++..+++...++.+.+.++++.+.+.+.
T Consensus 522 i~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 561 (782)
T PRK00409 522 IASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ 561 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 233333344444444455555555555555444
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-62 Score=615.90 Aligned_cols=525 Identities=24% Similarity=0.316 Sum_probs=428.0
Q ss_pred HHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCcc
Q 000778 674 AQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNK 753 (1288)
Q Consensus 674 ~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr~~Lk~lpDlerll~ri~~~~~~~~~~~~~ 753 (1288)
.+.++|.|++|++++++ +.|+++.+.|+.||+.++++.... . .-.|..++|+++++.|+..+...
T Consensus 17 ~l~~~~~t~~gk~~~~~--l~P~~~~~~i~~~l~~~~e~~~~~----~--~~~l~~~~di~~~l~r~~~g~~l------- 81 (771)
T TIGR01069 17 NLLKQTFTPLGKEDAIG--LKPPKSVEESKEIIIKLTALGSIE----N--NVRFFGFEDIRELLKRAELGGIV------- 81 (771)
T ss_pred HHHHHcCCHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHhh----c--cCCcCCCccHHHHHHHHhcCCcC-------
Confidence 45689999999999999 799999999999999999987421 1 34688999999999998532111
Q ss_pred chhhHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCCce
Q 000778 754 VVLYEDAAKKQ-LQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRI 832 (1288)
Q Consensus 754 ~~~~~~~~~~~-l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~~~~~~d~~~~~~~g~i 832 (1288)
...+ |..+..+|..+..+...... ....+.|..+.. .++.+.++++.|..+|| .+|.+
T Consensus 82 -------~~~e~l~~i~~~l~~~~~l~~~l~~------~~~~~~L~~~~~---~l~~~~~l~~~i~~~id-----~~g~i 140 (771)
T TIGR01069 82 -------KGLEYILVIQNALKTVKHLKVLSEH------VLDLEILFHLRL---NLITLPPLENDIIACID-----DDGKV 140 (771)
T ss_pred -------ChHHHHHHHHHHHHHHHHHHHHHhc------cccchHHHHHHh---cCCCcHHHHHHHHHHhC-----CCCEE
Confidence 0112 55555555544443332211 001233444432 24456667778888887 35655
Q ss_pred eeCCCCChhHHHHHHHHHHHHHHHHHHHHHHH------HHhcCCCceEEEeCCceeeeeccccccCCCCCcEEEEeeecC
Q 000778 833 IPHGGVDMDYDSACKKVKEIEASLTKHLKEQR------KLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKG 906 (1288)
Q Consensus 833 i~~~g~d~~ld~~~~~~~~i~~~L~~~l~~~~------~~l~~~~i~~~~~~~~~y~i~v~~~~~~~~p~~~~~~ss~~~ 906 (1288)
+++.+++|+.++..++.++.++.+.+.... +++++ .++++++++|+|+|+.++++++|+.++..| .+|
T Consensus 141 --~d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~~~~~~~~l~~---~~it~r~~r~vipvk~~~~~~i~g~v~~~S-~sg 214 (771)
T TIGR01069 141 --KDGASEELDAIRESLKALEEEVVKRLHKIIRSKELAKYLSD---TIVTIRNGRYVLPLKSGFKGKIKGIVHDTS-SSG 214 (771)
T ss_pred --CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcC---ceEEEECCEEEEEeeHHHhhcCCCeEEEEe-CCC
Confidence 789999999999999999888888776643 33444 388889999999999999999998887765 689
Q ss_pred cEEEeChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecC
Q 000778 907 FFRYWTPN-IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILD 985 (1288)
Q Consensus 907 ~~ry~tp~-l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~ 985 (1288)
.++|++|. +.++++++.+++.++..++.+|+.+|+..+.++...|..+++++++|||++|+|.+|..+ ++|+|.+.+
T Consensus 215 ~t~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~--~~~~P~~~~ 292 (771)
T TIGR01069 215 ETFYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQARARYAKAV--KGEFPMPSF 292 (771)
T ss_pred CEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCeeceecC
Confidence 99999998 999999999999999999999999999999999999999999999999999999999854 689999875
Q ss_pred CCCCCCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccc-
Q 000778 986 SCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI- 1064 (1288)
Q Consensus 986 ~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~- 1064 (1288)
. ..|.++++|||+++. ..+||||+.++. ..++++||||||||||||||+|+++++|+|+|++||+..
T Consensus 293 ~-----~~i~l~~~rhPll~~-----~~~vp~di~l~~--~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~ 360 (771)
T TIGR01069 293 T-----GKIILENARHPLLKE-----PKVVPFTLNLKF--EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEH 360 (771)
T ss_pred C-----CCEEEccccCceecC-----CceEeceeEeCC--CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcc
Confidence 3 379999999999863 259999999974 347999999999999999999999999999999999976
Q ss_pred cccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEE
Q 000778 1065 FEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGL 1144 (1288)
Q Consensus 1065 ~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl 1144 (1288)
+.++++|++|++++..+++..++|+|+.+|.+++.|+..+++++||||||||+|||+.+|.++++++++++.+ .|+++|
T Consensus 361 ~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~vi 439 (771)
T TIGR01069 361 SEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVL 439 (771)
T ss_pred ccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999976 489999
Q ss_pred EEcCCchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH--
Q 000778 1145 FSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFE-- 1222 (1288)
Q Consensus 1145 ~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~~~~le-- 1222 (1288)
++|||+++......+++|.+++|.. +.+++.|+|+|..|+++.|||++||+++|+|++||++|+++..+.+
T Consensus 440 itTH~~eL~~~~~~~~~v~~~~~~~-------d~~~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~ 512 (771)
T TIGR01069 440 ITTHYKELKALMYNNEGVENASVLF-------DEETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFYGEFKEE 512 (771)
T ss_pred EECChHHHHHHhcCCCCeEEeEEEE-------cCCCCceEEEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhhHHH
Confidence 9999999988877888999988863 3468999999999999999999999999999999999997654433
Q ss_pred --HHhhh----hhccccccccccchhhHHHHHHHHHHHHHhhcccc
Q 000778 1223 --AIYGK----HKKESEENLPADHCVDHMVVLIQSLLNFTANLSCQ 1262 (1288)
Q Consensus 1223 --~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1262 (1288)
..+.+ .+..++...++++..++.+...++++++.+.+++.
T Consensus 513 ~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 558 (771)
T TIGR01069 513 INVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER 558 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 23334444444555556666666666666655543
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=422.09 Aligned_cols=234 Identities=42% Similarity=0.732 Sum_probs=197.5
Q ss_pred cccceecCCCCCCCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC
Q 000778 978 TCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1288)
Q Consensus 978 ~~rP~~~~~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G 1057 (1288)
||||+|.++ ..|.|+++|||+++.. +....+||||+.++. ...++++||||||||||||||+|+.+++|||+|
T Consensus 1 y~~P~~~~~-----~~l~i~~~~HPll~~~-~~~~~~v~ndi~~~~-~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G 73 (235)
T PF00488_consen 1 YCRPKISEE-----KSLKIKEGRHPLLEEK-LENKKFVPNDIELSN-NKSRIIIITGPNMSGKSTFLKQIGLIVILAQIG 73 (235)
T ss_dssp EB-EEEEST-----TEEEEEEE--TTHHHH-TTTSSC--EEEEESS-SSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT
T ss_pred CcccEEcCC-----CCEEEEeccCCEEecc-ccCCceecceeecCC-CceeEEEEeCCCccchhhHHHHHHHHhhhhhcC
Confidence 799999863 4899999999999864 346789999999986 444799999999999999999999999999999
Q ss_pred ccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 000778 1058 ADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVH 1137 (1288)
Q Consensus 1058 ~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~ 1137 (1288)
+||||+.+.++++|+||++++..|++..+.|+|+.||.+++.|+..+++.+|||+||+|+||++.||.+++++++++|.+
T Consensus 74 ~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~ 153 (235)
T PF00488_consen 74 CFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLE 153 (235)
T ss_dssp --BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHH
T ss_pred ceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHH
Q 000778 1138 KVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAK 1217 (1288)
Q Consensus 1138 ~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~ 1217 (1288)
+.+|.+|++|||++++......+.|..+||.....+ +.+.|+|+|.+|.++.|||+++|+++|+|++||+||+++
T Consensus 154 ~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~-----~~~~f~Ykl~~G~~~~S~ai~iA~~~g~p~~II~rA~~i 228 (235)
T PF00488_consen 154 KSGCFVIIATHFHELAELLERNPNVQNYHMEVEEDN-----DSLTFTYKLKEGICSSSYAIEIAKLAGLPEEIIERAKEI 228 (235)
T ss_dssp TTT-EEEEEES-GGGGGHHHHSTTEEEEEEEEEEET-----TEEEEEEEEEES--SSTCHHHHHHHTT--HHHHHHHHHH
T ss_pred hccccEEEEeccchhHHHhhhCccccccceeeeeec-----cccceeEEEeECCCCCcHHHHHHHHhCcCHHHHHHHHHH
Confidence 568999999999999888777788999999877443 589999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000778 1218 STEFEA 1223 (1288)
Q Consensus 1218 ~~~le~ 1223 (1288)
.+++++
T Consensus 229 ~~~l~~ 234 (235)
T PF00488_consen 229 LKQLEE 234 (235)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999874
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=437.82 Aligned_cols=483 Identities=24% Similarity=0.344 Sum_probs=395.5
Q ss_pred HHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCchhHHHHH--HhcCCCCCHHHHHHHHhccccccCCCCc
Q 000778 675 QLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFR--KALSRLPDMERLLARLFASSEANGRNSN 752 (1288)
Q Consensus 675 lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr--~~Lk~lpDlerll~ri~~~~~~~~~~~~ 752 (1288)
+..++.|+.|+-+|+. +.|..+.+.|+..++-+.++... ... . -.+.++-|+...+.++..+..
T Consensus 16 ~~~~~~s~~g~~~~~~--l~p~~~~~~i~~~~~e~~~~~~~----~~~-~g~~~~~~l~~i~~~l~~~e~g~~------- 81 (753)
T COG1193 16 LASYAQSSLGLEELKN--LKPRTDLELIEEELSETAEALDI----LED-EGLPPLGGLNDVSEALGRLEKGGR------- 81 (753)
T ss_pred HHHhccCHHHHHHHHh--cCccccHHHHHHHHHHHHHHHHH----Hhc-cCCCCchhhhhhHHHHHHHhhccc-------
Confidence 4589999999999999 68999999999999988877521 000 0 135677888888888752211
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCCce
Q 000778 753 KVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRI 832 (1288)
Q Consensus 753 ~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~~~~~~d~~~~~~~g~i 832 (1288)
+ ...+|..+...|+++..+..+...+.... .... ..++.+..+...+...+| ..|.+
T Consensus 82 --l-----~~~el~~i~~~l~~~~~lkr~~~~~e~~~----~~~~-------~~~~~~~~l~~~i~~~id-----~~g~i 138 (753)
T COG1193 82 --L-----HVEELLEISDFLRGFRALKRAIKKLERIK----RTLA-------LALIELSDLELEINIPID-----DDGLI 138 (753)
T ss_pred --C-----CHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHH-------HhhhcchHHHHHHhhhhc-----ccccc
Confidence 0 23456677777777776665544332211 0111 123455555556666665 34555
Q ss_pred eeCCCCChhHHHHHHHHHHHHH----HHHHHHHHH-HHHhcCCCceEEEeCCceeeeeccccccCCCCCcEEEEeeecCc
Q 000778 833 IPHGGVDMDYDSACKKVKEIEA----SLTKHLKEQ-RKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGF 907 (1288)
Q Consensus 833 i~~~g~d~~ld~~~~~~~~i~~----~L~~~l~~~-~~~l~~~~i~~~~~~~~~y~i~v~~~~~~~~p~~~~~~ss~~~~ 907 (1288)
.+..++.++..+..++.+.. .++.+++.. ...+.+. +++.++++|+++|+..+++.+++..+..+ ..|.
T Consensus 139 --~d~as~~l~~ir~~lr~~~~~i~~~l~~~~~~~~~~~L~e~---~v~~r~~r~vlpvk~~fk~~i~giv~d~s-ssg~ 212 (753)
T COG1193 139 --KDRASFELDAIRRQLRDLEEEIRDKLESLIRSKEAKYLQDR---IVTTRDGREVLPVKAEFKGAIKGIVHDTS-SSGA 212 (753)
T ss_pred --cccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHhhhhc---eEeccCCeEEeHHHHHhhhhcCceEeecc-cccC
Confidence 56778889988887765544 455555544 5555554 78889999999999999999999987776 4788
Q ss_pred EEEeChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCC
Q 000778 908 FRYWTPN-IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDS 986 (1288)
Q Consensus 908 ~ry~tp~-l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~ 986 (1288)
+.|..|. +..+++++.++..+.+.+...+++.+...+.++...+..+...++.||++.+.+.++.. ..+++|.|.+
T Consensus 213 tl~ieP~~vv~l~n~~~~l~~eE~~e~e~il~~lsa~v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~--~~~v~P~~~~- 289 (753)
T COG1193 213 TLYIEPRSVVKLNNELRALLVEEDEEEERILRELSALVAPVIPELEILLEIIGELDFIEAKVRYAKA--LKGVKPDFSN- 289 (753)
T ss_pred eeeecchHHHhhccHhhhhhccchHhHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHHHh--hccCCCccCC-
Confidence 9999998 99999999999999999999999999999999999999999999999999999999985 4678999974
Q ss_pred CCCCCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcccccccc-
Q 000778 987 CSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIF- 1065 (1288)
Q Consensus 987 ~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~- 1065 (1288)
...|.+.++|||++.. .+|+++.++. .-..++|||||++|||+.||+++++.+|+|.|.++|+...
T Consensus 290 ----~~~l~l~~~~HPll~~-------~v~~~i~~~~--e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gs 356 (753)
T COG1193 290 ----DGVLELLDARHPLLKE-------DVPNDLELGE--ELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGS 356 (753)
T ss_pred ----CceEEeccccCccCcc-------cccccccccc--ccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCC
Confidence 3479999999999974 2899999985 3468999999999999999999999999999999999886
Q ss_pred ccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEE
Q 000778 1066 EISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLF 1145 (1288)
Q Consensus 1066 ~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~ 1145 (1288)
.+++|+.+|..+|.+|++.+.+|||+++|..++.++..++ +|+|+||+|+||+|.+|++++.++++++.+. ++.++.
T Consensus 357 ei~~F~~i~aDIGDeQsIeqsLSTFSshm~~i~~il~~~d--sLvl~DElg~GTdp~EgaaLai~ile~l~~~-~~~~~~ 433 (753)
T COG1193 357 ELPVFVKIFADIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDLLEK-PAKIVA 433 (753)
T ss_pred cchhHHHhhhccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHHhhcCCCcchhHHHHHHHHHHHHhc-ccceeh
Confidence 8999999999999999999999999999999999996444 9999999999999999999999999999775 999999
Q ss_pred EcCCchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHH----HHHH
Q 000778 1146 STHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAK----STEF 1221 (1288)
Q Consensus 1146 ~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~----~~~l 1221 (1288)
+|||.++..+...++.+.+..|. ++.+++.++|++..|.+++||+|.+|..+|+|..+|++|+.. ..++
T Consensus 434 tTH~~elk~~~~~~~~v~nas~~-------fd~etL~ptY~l~~G~~g~S~Af~ia~rlGl~~~iie~a~~~~g~~~~~~ 506 (753)
T COG1193 434 TTHYRELKALAAEREGVENASME-------FDAETLRPTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEFGEEKELL 506 (753)
T ss_pred HhhHHHHHHHHhcchhhhchhhh-------hhHHHhhHHHHHhcCCcccchHHHHHHHcCCCHHHHHHHHHhcCchHhHH
Confidence 99999999999998889888886 456889999999999999999999999999999999999852 3444
Q ss_pred HHHhh
Q 000778 1222 EAIYG 1226 (1288)
Q Consensus 1222 e~~~~ 1226 (1288)
+.+++
T Consensus 507 ~~~i~ 511 (753)
T COG1193 507 EELIE 511 (753)
T ss_pred HHHhh
Confidence 44444
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=387.80 Aligned_cols=216 Identities=57% Similarity=0.930 Sum_probs=200.0
Q ss_pred EecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHH
Q 000778 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1288)
Q Consensus 996 i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~ 1075 (1288)
|+++|||+++.. ....+||||++|+. .++++++||||||+|||||||+++++++|||+|+||||..+.++++|+||+
T Consensus 2 ~~~~rHPll~~~--~~~~~v~ndi~l~~-~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~ 78 (218)
T cd03286 2 FEELRHPCLNAS--TASSFVPNDVDLGA-TSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFT 78 (218)
T ss_pred cccccCCEEecc--cCCCeEEeeeEEee-cCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEE
Confidence 678999999742 23579999999997 668999999999999999999999999999999999999999999999999
Q ss_pred hcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1076 ~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
+++..|++..+.|+|+.||++++.|+..+++++||||||||+||++.||.+++++++++|.+..++++|++|||++++..
T Consensus 79 ~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 79 RIGARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred ecCcccccccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986558999999999999999
Q ss_pred hcCCCceEEeeeEEEEecC-CCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHH
Q 000778 1156 YKKDPRVSLCHMACQVGNG-VGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKA 1214 (1288)
Q Consensus 1156 ~~~~~~v~~~~~~~~~~~g-~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A 1214 (1288)
+..+++|.++||...+... +.+.+++.|+|+|.+|.++.|||+++|+++|+|++||+||
T Consensus 159 ~~~~~~v~~~~m~~~~~~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 159 FHEHGGVRLGHMACAVKNESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred hhcCcceEEEEEEEEEeccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 9888899999999877542 1123689999999999999999999999999999999987
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=380.46 Aligned_cols=218 Identities=44% Similarity=0.695 Sum_probs=198.1
Q ss_pred EEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHH
Q 000778 994 ISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRI 1073 (1288)
Q Consensus 994 l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i 1073 (1288)
|.|+++|||+++. +....+++||++|.. .++++++|+||||+|||||||+|+++.++||+|++||+..+.++++|+|
T Consensus 1 ~~i~~~rHPlle~--~~~~~~v~n~i~~~~-~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i 77 (222)
T cd03287 1 ILIKEGRHPMIES--LLDKSFVPNDIHLSA-EGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSV 77 (222)
T ss_pred CeeecccCCEEec--cCCCCEEEEeEEEEe-cCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceE
Confidence 4689999999985 233579999999997 6789999999999999999999999999999999999999999999999
Q ss_pred HHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1074 FVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1074 ~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
|++++..|++..+.|+|+.||.+++.|+..+++++||||||||+||++.|+.+++++++++|.+..++++|++||+++++
T Consensus 78 ~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~ 157 (222)
T cd03287 78 LTRMGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLG 157 (222)
T ss_pred EEEecCccccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876589999999999998
Q ss_pred hhhcC-CCceEEeeeEEEEecC---CCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHH
Q 000778 1154 VDYKK-DPRVSLCHMACQVGNG---VGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKA 1214 (1288)
Q Consensus 1154 ~~~~~-~~~v~~~~~~~~~~~g---~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A 1214 (1288)
..... .+.+.++||....... ..+.++++|+|||.+|.++.|||+++|+++|+|++||+||
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 158 EILRRFEGSIRNYHMSYLESQKDFETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred HHHHhcccCeEEEEEEEEEeccccccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 76643 2468899998765432 1235689999999999999999999999999999999997
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=370.33 Aligned_cols=220 Identities=41% Similarity=0.712 Sum_probs=195.5
Q ss_pred EecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHH
Q 000778 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1288)
Q Consensus 996 i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~ 1075 (1288)
|+++|||+++.. ...++|+||++++. .++++++|+||||+|||||||+|+.+++|||+|+||||..+.+++++++++
T Consensus 2 ~~~~~hpll~~~--~~~~~v~~~~~~~~-~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~ 78 (222)
T cd03285 2 LKEARHPCVEAQ--DDVAFIPNDVTLTR-GKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILA 78 (222)
T ss_pred ccccCCCEEecc--CCCCeEEeeEEEee-cCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEe
Confidence 679999999862 34679999999997 678999999999999999999999999999999999999999999999999
Q ss_pred hcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1076 ~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
+++..+.+..+.|+|+.||.+++.++..+++|+||||||||+||+++|+.++++++++++.++.++++||+||++++...
T Consensus 79 ~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~ 158 (222)
T cd03285 79 RVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTAL 158 (222)
T ss_pred eeccccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHH
Confidence 99999999999999999999999999989999999999999999999999999999999976558999999999877664
Q ss_pred hcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 000778 1156 YKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEF 1221 (1288)
Q Consensus 1156 ~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~~~~l 1221 (1288)
....+.+...++.....+ ..+.+.|+|+|.+|.++.|||+++|+++|+|++||+||+++++++
T Consensus 159 ~~~~~~i~~g~~~~~~~~---~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~~ 221 (222)
T cd03285 159 ADEVPNVKNLHVTALTDD---ASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALEL 221 (222)
T ss_pred hhcCCCeEEEEEEEEEeC---CCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 443344545555433322 236899999999999999999999999999999999999998876
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=350.80 Aligned_cols=214 Identities=48% Similarity=0.712 Sum_probs=194.1
Q ss_pred EecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHH
Q 000778 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1288)
Q Consensus 996 i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~ 1075 (1288)
|+++|||+++.. +....+|+||++|+. . .++++||||||+|||||||+|+++++|+|+|+++|+..+.+++++++|+
T Consensus 2 i~~~~hp~~~~~-~~~~~~v~n~~~l~~-~-~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~ 78 (216)
T cd03284 2 IEGGRHPVVEQV-LDNEPFVPNDTELDP-E-RQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFT 78 (216)
T ss_pred cccccCCEEeec-cCCCceEeeeEEecC-C-ceEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEec
Confidence 689999999852 223579999999997 3 3899999999999999999999999999999999999999999999999
Q ss_pred hcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1076 ~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
+++..|++..+.|+|+.||.+++.++..+++|+||||||||+||+++|+.+++++++++|.+..++++|++||++++...
T Consensus 79 ~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l 158 (216)
T cd03284 79 RIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTEL 158 (216)
T ss_pred cCCchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999976558999999999988776
Q ss_pred hcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHH
Q 000778 1156 YKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAK 1217 (1288)
Q Consensus 1156 ~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~ 1217 (1288)
....+++.++|+..... .+++.|+|++..|.++.|||+++|+++|+|++||+||+++
T Consensus 159 ~~~~~~v~~~~~~~~~~-----~~~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~ 215 (216)
T cd03284 159 EGKLPRVKNFHVAVKEK-----GGGVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREI 215 (216)
T ss_pred hhcCCCeEEEEEEEEee-----CCeEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHh
Confidence 66566787888765432 4689999999999999999999999999999999999975
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=339.71 Aligned_cols=207 Identities=39% Similarity=0.653 Sum_probs=186.2
Q ss_pred EecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHH
Q 000778 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1288)
Q Consensus 996 i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~ 1075 (1288)
|+++|||+++. ....+||||+.++. ..+++++||||||+|||||||+|+++.+|+|+|+++|+..+.++++|++++
T Consensus 2 i~~~rHPll~~---~~~~~vpnd~~l~~-~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~ 77 (213)
T cd03281 2 IQGGRHPLLEL---FVDSFVPNDTEIGG-GGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFT 77 (213)
T ss_pred cccccCCEEec---cCCceEcceEEecC-CCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeee
Confidence 67999999985 23479999999985 334899999999999999999999999999999999999999999999999
Q ss_pred hcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc-c-CcEEEEEcCCchhh
Q 000778 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHK-V-QCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1076 ~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~-~-~~~vl~~TH~~~l~ 1153 (1288)
+++..+++..+.|+|+.||++++.++..+++++|+|||||++|||+.++.++++++++++.+. . ++++|++|||++++
T Consensus 78 ~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~ 157 (213)
T cd03281 78 RMSSRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELF 157 (213)
T ss_pred eeCCccChhhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999764 1 35899999999999
Q ss_pred hhhc--CCCceEEeeeEEEEecC-CCCcceEEEeeEecCCCCCCcHHHHHHHHcCC
Q 000778 1154 VDYK--KDPRVSLCHMACQVGNG-VGGVEEVTFLYRLSPGACPKSYGVNVARLAGI 1206 (1288)
Q Consensus 1154 ~~~~--~~~~v~~~~~~~~~~~g-~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGl 1206 (1288)
..+. ..+.+.++||...+... ....+.+.|+|+|.+|+++.|||+++|+++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 158 NRSLLPERLKIKFLTMEVLLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred HhhhhccCCceEEEEEEEEEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 8875 56789999999876531 11246899999999999999999999999996
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=337.18 Aligned_cols=201 Identities=38% Similarity=0.605 Sum_probs=186.8
Q ss_pred EecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHH
Q 000778 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1288)
Q Consensus 996 i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~ 1075 (1288)
|+++|||+++. ...++++||++|+. ..+++++||||||+|||||||+|+++++|+|+|+||||..+.++++++|++
T Consensus 2 i~~~~hpll~~---~~~~~v~~~~~~~~-~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~ 77 (204)
T cd03282 2 IRDSRHPILDR---DKKNFIPNDIYLTR-GSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLS 77 (204)
T ss_pred cccccCCeEec---cCCcEEEeeeEEee-CCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeE
Confidence 67899999985 24579999999998 678999999999999999999999999999999999999999999999999
Q ss_pred hcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1076 ~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
+++..|++..+.|+|+.||+++..++..+++|+||||||||+||++.|+.++++++++++.+. ++++|++||+++++..
T Consensus 78 ~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~-~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 78 RLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKK-ESTVFFATHFRDIAAI 156 (204)
T ss_pred ecCCccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999775 8999999999999999
Q ss_pred hcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCC-CcHHHHHHHHcC
Q 000778 1156 YKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACP-KSYGVNVARLAG 1205 (1288)
Q Consensus 1156 ~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~-~s~g~~vA~~aG 1205 (1288)
+...+.+.++||...+.. .+.+.|+|+|.+|.+. .|||+++|+++.
T Consensus 157 ~~~~~~v~~~~~~~~~~~----~~~~~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 157 LGNKSCVVHLHMKAQSIN----SNGIEMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred hhcCCCeEEEEEEEEEcC----CCceeeEEEEeeCCCCCCccHHHHHHHhh
Confidence 888889999999876643 2577899999999999 999999999764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=333.89 Aligned_cols=306 Identities=34% Similarity=0.441 Sum_probs=236.4
Q ss_pred cccHHHHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhcCCCCCHHHHHHHHhccccccC
Q 000778 669 SGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANG 748 (1288)
Q Consensus 669 ~gSL~~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr~~Lk~lpDlerll~ri~~~~~~~~ 748 (1288)
+||||++||+|+|++|+|+||+|+++|++|.++|++||++|++|.. +..+...++..|+++||++|++.++..+. .
T Consensus 1 ~~sL~~~l~~~~T~~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~-~~~l~~~l~~~L~~~~Di~~~l~~~~~~~-~-- 76 (308)
T smart00533 1 KGSLFELLNHTKTPMGKRLLRRWLLQPLLDLKEINERLDAVEELVE-NPELRQKLRQLLKRIPDLERLLSRIERGR-A-- 76 (308)
T ss_pred CCCHHHHHccCCCcHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHh-ChHHHHHHHHHHccCCcHHHHHHHHHcCC-C--
Confidence 4799999999999999999999999999999999999999999986 55677889999999999999999985321 0
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchH-hhc
Q 000778 749 RNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWV-EAN 827 (1288)
Q Consensus 749 ~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~~~~~~d~~-~~~ 827 (1288)
...++..+..++..+..+.+.+.... .......+..+. . .+...+..+.+.++.. ...
T Consensus 77 ------------~~~el~~l~~~l~~~~~l~~~l~~~~---~~~~~~~~~~~~---~---~~~~~~~~l~~~~~~~~~~~ 135 (308)
T smart00533 77 ------------SPRDLLRLYDSLEGLKEIRQLLESLD---GPLLGLLLKVIL---E---PLLELLELLLELLNDDDPLE 135 (308)
T ss_pred ------------CHHHHHHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHhhc---c---chHHHHHHHHHHhccCCccc
Confidence 12345556666555444433221110 000001111111 0 1112222222222111 111
Q ss_pred CCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCceeeeeccccccCCCCCcEEEEeeecCc
Q 000778 828 NSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGF 907 (1288)
Q Consensus 828 ~~g~ii~~~g~d~~ld~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~~~~~~~~~y~i~v~~~~~~~~p~~~~~~ss~~~~ 907 (1288)
......+++|++++||.++..+.+++++++++++++.+.++.+.+++..+...+|+++||.....++|++|+..+++++.
T Consensus 136 ~~~~~~i~~~~s~~Ld~lr~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~g~~i~v~~~~~~~~~~~~~~~s~s~~~ 215 (308)
T smart00533 136 VNDGGLIKDGFDPELDELREKLEELEEELEELLKKEREELGIDSLKLGYNKVHGYYIEVTKSEAKKVPKDFIRRSSLKNT 215 (308)
T ss_pred ccCCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeEeccEEEEEEecchhhccCChHHHHHhhhccc
Confidence 11112358999999999999999999999999998877766655665555566799999999888999999999999999
Q ss_pred EEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCCC
Q 000778 908 FRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSC 987 (1288)
Q Consensus 908 ~ry~tp~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~ 987 (1288)
.+|.++++.++++++.+++.++..+...++.+++..+.++...|..+++++++|||++|+|.+|..+ +||||+|++.
T Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~--~~~~P~i~~~- 292 (308)
T smart00533 216 ERFTTPELKELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAEG--NYVRPEFVDS- 292 (308)
T ss_pred ceeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCcCCeeCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999754 7999999863
Q ss_pred CCCCCeEEEecCCCCcccc
Q 000778 988 SNEEPYISAKSLGHPVLRS 1006 (1288)
Q Consensus 988 ~~~~~~l~i~~~rHP~l~~ 1006 (1288)
+.|.|+++|||+++.
T Consensus 293 ----~~l~i~~~rHPlle~ 307 (308)
T smart00533 293 ----GELEIKNGRHPVLEL 307 (308)
T ss_pred ----CCEEEeeCCCCcccC
Confidence 579999999999973
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=310.66 Aligned_cols=184 Identities=53% Similarity=0.820 Sum_probs=171.2
Q ss_pred EEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCc
Q 000778 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNS 1108 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~s 1108 (1288)
+++||||||||||||||+|+++++|||+|++|||..+.++++|+++++++..+++..+.|+|+.||++++.++..+++|+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEeeEec
Q 000778 1109 LVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLS 1188 (1288)
Q Consensus 1109 LvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~ 1188 (1288)
|+|+|||++|||+.++.++++++++++.++.++++|++||++++.......++|.++||...... +++.|+|+|.
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~-----~~~~~~Y~l~ 155 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEET-----ENLTFLYKLT 155 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEec-----CceeEEEEEe
Confidence 99999999999999999999999999876448899999999998877666678999999876543 4699999999
Q ss_pred CCCCCCcHHHHHHHHcCCCHHHHHHHHHH
Q 000778 1189 PGACPKSYGVNVARLAGIPDKVLQKAVAK 1217 (1288)
Q Consensus 1189 ~G~~~~s~g~~vA~~aGlP~~vi~~A~~~ 1217 (1288)
+|.++.|||+++|+++|+|++||+||+++
T Consensus 156 ~G~~~~s~a~~~a~~~g~~~~i~~~a~~~ 184 (185)
T smart00534 156 PGVAGKSYGIEVAKLAGLPKEVIERAKEI 184 (185)
T ss_pred ECCCCCcHHHHHHHHhCCCHHHHHHHHHh
Confidence 99999999999999999999999999874
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=309.87 Aligned_cols=196 Identities=36% Similarity=0.530 Sum_probs=180.7
Q ss_pred EecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHH
Q 000778 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1288)
Q Consensus 996 i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~ 1075 (1288)
++++|||+++. .++|+||++|.. |++++||||||||||||||+|++.++++|.|++||+..+.++ .+.+|.
T Consensus 2 ~~~~~hp~~~~-----~~~v~n~i~l~~---g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l~~ 72 (199)
T cd03283 2 AKNLGHPLIGR-----EKRVANDIDMEK---KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKIFT 72 (199)
T ss_pred CcccCCCeecC-----CCeecceEEEcC---CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceEEE
Confidence 67899999974 369999999985 589999999999999999999999999999999999888887 789999
Q ss_pred hcCchhhHhhcccchHHHHHHHHHHHHhCC--CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1076 RMGAKDHIMAGQSTFLTELSETALMLSSAT--RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1076 ~ig~~d~i~~~~Stf~~e~~~~~~il~~a~--~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
+++..|++..+.|.|..++.++..++..+. +|+|||||||++|||+.++..+..++++.+.+. +.++|++||+++++
T Consensus 73 ~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~-~~tiiivTH~~~~~ 151 (199)
T cd03283 73 SIRVSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNK-NTIGIISTHDLELA 151 (199)
T ss_pred eccchhccccccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEcCcHHHH
Confidence 999999999999999999999999999988 999999999999999999998888889988754 89999999999999
Q ss_pred hhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCC
Q 000778 1154 VDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGI 1206 (1288)
Q Consensus 1154 ~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGl 1206 (1288)
..+...++|.++||...+.+ ..+.|+|+|.+|+|+.|||+++|+++|+
T Consensus 152 ~~~~~~~~v~~~~~~~~~~~-----~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 152 DLLDLDSAVRNYHFREDIDD-----NKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred HhhhcCCCeEEEEEEEEEEC-----CeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 88877889999999988753 5899999999999999999999999996
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=300.29 Aligned_cols=199 Identities=32% Similarity=0.491 Sum_probs=175.2
Q ss_pred EEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccc-cccchHHHH
Q 000778 995 SAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-FEISPVDRI 1073 (1288)
Q Consensus 995 ~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~-~~l~~~d~i 1073 (1288)
+|+++|||+++. ...+++++++.+.. ..++++||||||+|||||||+|+.+.+++|+|++||+.. ..+++++++
T Consensus 1 ~~~~~~hp~~~~---~~~~~~~~~~~i~~--~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~ 75 (200)
T cd03280 1 RLREARHPLLPL---QGEKVVPLDIQLGE--NKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENI 75 (200)
T ss_pred CCcccCCCEEec---cCCceEcceEEECC--CceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEE
Confidence 378999999985 25679999999874 236899999999999999999998899999999999975 678889999
Q ss_pred HHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1074 FVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1074 ~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
+++++..+.+..+.|+|+.+|+++..++..+++|+++|+|||++|||+.++..+...+++.+.+. ++++|++||++++.
T Consensus 76 ~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~-~~~vi~~tH~~~l~ 154 (200)
T cd03280 76 FADIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLER-GALVIATTHYGELK 154 (200)
T ss_pred EEecCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECCHHHHH
Confidence 99999999999999999999999999998899999999999999999999999888888888654 89999999997765
Q ss_pred hhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCC
Q 000778 1154 VDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGI 1206 (1288)
Q Consensus 1154 ~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGl 1206 (1288)
. +++ ++..++.|.++.+ .+++.|+|++.+|.++.|||+++|+.+|+
T Consensus 155 ~-~~d--~~~~l~~g~l~~~----~~~~~~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 155 A-YAY--KREGVENASMEFD----PETLKPTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred H-HHh--cCCCeEEEEEEEe----cCcccEEEEEeECCCCCcHHHHHHHHcCC
Confidence 4 454 5666677777654 35789999999999999999999999996
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-32 Score=295.18 Aligned_cols=201 Identities=52% Similarity=0.772 Sum_probs=177.4
Q ss_pred EecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHH
Q 000778 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1288)
Q Consensus 996 i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~ 1075 (1288)
++++|||+++.. ....+++|||+.++. |++++||||||||||||||+|++..+++|.|+++|+..+.+++++++++
T Consensus 2 ~~~~~~p~l~~~-~~~~~~~~~~~~l~~---~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~ 77 (202)
T cd03243 2 IKGGRHPVLLAL-TKGETFVPNDINLGS---GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFT 77 (202)
T ss_pred cccccCCEEecc-ccCCceEeeeEEEcC---CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEE
Confidence 678999999742 123579999999974 6899999999999999999999999999999999999999999999999
Q ss_pred hcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1076 ~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
.++..+++..+.|+|+.|++++..++..+.+|+++|||||++|||+.++..+.+++++.+.+. ++++|++||+++++..
T Consensus 78 ~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~-~~~vi~~tH~~~~~~~ 156 (202)
T cd03243 78 RIGAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEK-GCRTLFATHFHELADL 156 (202)
T ss_pred EecCcccccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEECChHHHHHH
Confidence 999999999999999999999999999999999999999999999999998888888888654 8999999999999887
Q ss_pred hcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCC
Q 000778 1156 YKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGI 1206 (1288)
Q Consensus 1156 ~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGl 1206 (1288)
....+.+...++..... ..++.|+|++.+|.++.|||+.+|+..|+
T Consensus 157 ~~~~~~l~~~~~~~~~~-----~~~~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 157 PEQVPGVKNLHMEELIT-----TGGLTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred hhcCCCeEEEEEEEEec-----CCeeeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 66444555555543322 35789999999999999999999999886
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PF01624 MutS_I: MutS domain I C-terminus | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-31 Score=257.89 Aligned_cols=107 Identities=37% Similarity=0.683 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHhhCCCeEEEEeeCceEEEecccHHHHhhhcceeeec----CC--CCcCCcCcccHhHHHHHHHHcCCeE
Q 000778 328 SEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK----GE--QPHCGFPERNFSMNVEKLARKGYRV 401 (1288)
Q Consensus 328 TP~~~QyweiK~~~~D~VlfFkvGkFYEly~~DA~i~ak~L~L~~~~----g~--~~~~GfPe~sl~~y~~kLV~~GyKV 401 (1288)
|||++|||++|++|||+|+||++|+|||+|++||+.+|+.|+++++. ++ .||||||.++++.|+++|+++||||
T Consensus 1 Tp~~~~y~~lk~k~~d~i~lf~~G~fYe~y~~DA~~~a~~l~~~~~~~~~~~~~~~~~~gfp~~~l~~~l~~Ll~~G~~V 80 (113)
T PF01624_consen 1 TPFEQQYWELKEKYPDTIVLFQVGDFYEAYGEDAEFVAEILGLKLSKRKTGGGKSVPMAGFPKSQLDKYLKKLLEAGYRV 80 (113)
T ss_dssp -HHHHHHHHHHCTSTTSEEEEEETTEEEEECHHHHHHHHHHTSSSEEEECSSSECEEEEEEEGGGHHHHHHHHHHTT-EE
T ss_pred ChHHHHHHHHHhhCCCeEEEEEcCCEEEEEccCHHHHHHhccceeeeccccccccccEecccHHHHHHHHHHHHHcCCEE
Confidence 89999999999999999999999999999999999999999999873 22 6999999999999999999999999
Q ss_pred EEEeccCChHHHHHHhhhcCCCCceeeeeEEEEeeCcceeecc
Q 000778 402 LVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE 444 (1288)
Q Consensus 402 avveQ~Et~~~~~~r~~~~g~~~kvv~Rev~~ViTpGTl~d~~ 444 (1288)
+||+|+|++... +++++|+|++|+||||++|++
T Consensus 81 ~i~~q~~~~~~~----------~~~~~R~v~~i~TpGt~~~~~ 113 (113)
T PF01624_consen 81 AIYEQVETPSET----------KGLIEREVTRIYTPGTLIDDE 113 (113)
T ss_dssp EEEEE-S-HHHH----------SSS--EEEEEEEBTTS-TST-
T ss_pred EEEEecCCcccc----------CCCccEEEEEEECcCeecCcC
Confidence 999999998642 258999999999999999864
|
; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A .... |
| >PF05192 MutS_III: MutS domain III C-terminus | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-22 Score=214.09 Aligned_cols=91 Identities=47% Similarity=0.776 Sum_probs=79.6
Q ss_pred HHHHHhcccccccCCCCCcccHHHHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhcCCC
Q 000778 651 APALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRL 730 (1288)
Q Consensus 651 ~~tl~~LEI~~n~~~g~~~gSL~~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr~~Lk~l 730 (1288)
++|+++||||++..+++.+||||++||+|.|++|+|+|++||++|++|++.|+.||++|++|.. ++.+...++..|+++
T Consensus 1 ~~Tl~~L~i~~~~~~~~~~~sL~~~ln~t~T~~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~-n~~~~~~~~~~l~~~ 79 (204)
T PF05192_consen 1 ANTLKSLEIFENSRSGKKKGSLFSLLNRTSTPMGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQ-NEELREELRSILKKI 79 (204)
T ss_dssp HHHHHHTTSSSBTTTSSSSTSHHHHH---SSHHHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHH-THHHHHHHHHHHTTC
T ss_pred ChhHHhccCCCCCCCCCCCCcHHHHHhcCCChHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH-hhhHhhhhhhhhhcc
Confidence 5899999999988888889999999999999999999999999999999999999999999996 667778899999999
Q ss_pred CCHHHHHHHHhc
Q 000778 731 PDMERLLARLFA 742 (1288)
Q Consensus 731 pDlerll~ri~~ 742 (1288)
+|+++++.++..
T Consensus 80 ~di~~~l~~l~~ 91 (204)
T PF05192_consen 80 PDIERILKRLRS 91 (204)
T ss_dssp -SHHHHHHHHHT
T ss_pred chHHHHHHHHHH
Confidence 999999999864
|
; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A .... |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-20 Score=204.75 Aligned_cols=158 Identities=22% Similarity=0.210 Sum_probs=125.7
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--------------------HHhhcCcccccccc---ccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EIS 1068 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--------------------ilaq~G~~vPa~~~---~l~ 1068 (1288)
+++|.+|++|++ .+|++++|+||||||||||||+|+++. -+|+.-+|||+... .+.
T Consensus 14 ~~~il~~ls~~i-~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~t 92 (258)
T COG1120 14 GKPILDDLSFSI-PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLT 92 (258)
T ss_pred CeeEEecceEEe-cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcE
Confidence 478999999999 789999999999999999999999854 24666678887631 111
Q ss_pred -------------------------hHHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1069 -------------------------PVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1069 -------------------------~~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
.++..+..+|..+...+...++| +|.+++..+.++|++|.++||||| |+.+
T Consensus 93 V~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEP---Ts~L 169 (258)
T COG1120 93 VYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEP---TSHL 169 (258)
T ss_pred EeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCC---cccc
Confidence 12334666777777777777777 566677777788999999999999 6666
Q ss_pred HH--HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1123 DG--QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1123 Dg--~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|- +--...++..+.++.|.|+|+++||++++..+++ ++..++.|.++..|.
T Consensus 170 Di~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad--~~i~lk~G~i~a~G~ 222 (258)
T COG1120 170 DIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYAD--HLILLKDGKIVAQGT 222 (258)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC--EEEEEECCeEEeecC
Confidence 62 2223478888876779999999999999999999 999999999999885
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-20 Score=191.30 Aligned_cols=134 Identities=43% Similarity=0.548 Sum_probs=114.3
Q ss_pred EecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh----------cCcccccccc
Q 000778 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ----------VGADVPAEIF 1065 (1288)
Q Consensus 996 i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq----------~G~~vPa~~~ 1065 (1288)
|..++||.+ +++|+|.+.. +.+++|||||||||||+||+|+.+..+++ .|+++|+..+
T Consensus 2 i~~~~~~~~---------~~~~~i~~~~---~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 69 (162)
T cd03227 2 IVLGRFPSY---------FVPNDVTFGE---GSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSA 69 (162)
T ss_pred ceeCCCCEE---------EeccEEecCC---CCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEE
Confidence 456789976 5799999863 37999999999999999999999999999 9999999876
Q ss_pred ccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCC--CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEE
Q 000778 1066 EISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSAT--RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRG 1143 (1288)
Q Consensus 1066 ~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~--~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~v 1143 (1288)
.+ ++++++ +|..+.++..++.++..++ +|+|+|||||++|||+.++..++..+.+++. + ++++
T Consensus 70 ~~-----i~~~~~--------lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~-~-~~~v 134 (162)
T cd03227 70 EL-----IFTRLQ--------LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLV-K-GAQV 134 (162)
T ss_pred EE-----ehheee--------ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c-CCEE
Confidence 65 565554 6777788888888888765 9999999999999999999999988887764 4 7899
Q ss_pred EEEcCCchhhhhh
Q 000778 1144 LFSTHYHRLAVDY 1156 (1288)
Q Consensus 1144 l~~TH~~~l~~~~ 1156 (1288)
|++||+++++...
T Consensus 135 ii~TH~~~~~~~~ 147 (162)
T cd03227 135 IVITHLPELAELA 147 (162)
T ss_pred EEEcCCHHHHHhh
Confidence 9999999998753
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-19 Score=199.98 Aligned_cols=150 Identities=24% Similarity=0.220 Sum_probs=120.0
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------h---------hcCcccccccc---cc------
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------A---------QVGADVPAEIF---EI------ 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------a---------q~G~~vPa~~~---~l------ 1067 (1288)
.++.||+|.+ .+|++++|+||||||||||+|+|+|+.-. . +.-.|||+... .+
T Consensus 18 ~vl~~i~l~v-~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d 96 (254)
T COG1121 18 PVLEDISLSV-EKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKD 96 (254)
T ss_pred eeeeccEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHH
Confidence 5889999999 78999999999999999999999996521 1 12358887431 11
Q ss_pred ---------------------chHHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1068 ---------------------SPVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1068 ---------------------~~~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
..++..+.++|..+...+..+.+| ++++++..+.+++++|.|+|||||+.|.|+.- .
T Consensus 97 ~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~-~ 175 (254)
T COG1121 97 VVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG-Q 175 (254)
T ss_pred HHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHH-H
Confidence 123456677888877777888888 56677778888999999999999999999884 4
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
...+.+|.+|.++ |||||++|||++.+..+++ +|..++..
T Consensus 176 ~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D--~vi~Ln~~ 215 (254)
T COG1121 176 KEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFD--RVICLNRH 215 (254)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCC--EEEEEcCe
Confidence 4556999999887 9999999999999999988 77666544
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-19 Score=185.93 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=122.9
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------hhcCccccccc---cc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------AQVGADVPAEI---FE 1066 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------aq~G~~vPa~~---~~ 1066 (1288)
+..|+++|++++ .+|++++|+||+|||||||||+|.++-.. .++| +|.+.. ..
T Consensus 14 ~~~VLkgi~l~v-~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG-mVFQ~fnLFPH 91 (240)
T COG1126 14 DKEVLKGISLSV-EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG-MVFQQFNLFPH 91 (240)
T ss_pred CeEEecCcceeE-cCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC-eeccccccccc
Confidence 457999999999 89999999999999999999999975311 1223 333322 12
Q ss_pred cchH----------------------HHHHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1067 ISPV----------------------DRIFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1067 l~~~----------------------d~i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+++. -.++.++|..|......+.+|+ +.++++.+.++|.+|.++|+||||+..||.-
T Consensus 92 lTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPEl 171 (240)
T COG1126 92 LTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL 171 (240)
T ss_pred chHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHH
Confidence 2222 2357788888888888888885 4556888888999999999999966666654
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
... ...++..|++. |.|.+++||.+.+|...++ +|++++.|.++..|.
T Consensus 172 v~E-VL~vm~~LA~e-GmTMivVTHEM~FAr~Vad--rviFmd~G~iie~g~ 219 (240)
T COG1126 172 VGE-VLDVMKDLAEE-GMTMIIVTHEMGFAREVAD--RVIFMDQGKIIEEGP 219 (240)
T ss_pred HHH-HHHHHHHHHHc-CCeEEEEechhHHHHHhhh--eEEEeeCCEEEEecC
Confidence 332 34788888776 8999999999999999999 999999999888764
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-19 Score=202.06 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=123.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc---ccc-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF---EIS- 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~---~l~- 1068 (1288)
..++++|+|.+ .+|++++|+||||||||||||+|+|++. ..++| |+|.... .++
T Consensus 18 ~~~l~~vs~~i-~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig-y~~~~~~~~~~lT~ 95 (293)
T COG1131 18 KTALDGVSFEV-EPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG-YVPQEPSLYPELTV 95 (293)
T ss_pred CEEEeceeEEE-cCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE-EEccCCCCCccccH
Confidence 58999999999 7899999999999999999999999652 12233 5554321 111
Q ss_pred --------------------hHHHHHHhcCchhhHhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1069 --------------------PVDRIFVRMGAKDHIMAGQSTFLTELS-ETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1069 --------------------~~d~i~~~ig~~d~i~~~~Stf~~e~~-~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.++.++..+|..+......++||.+|+ ++..+++++.+|+|+|||||++|.|+.-.. .
T Consensus 96 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~-~ 174 (293)
T COG1131 96 RENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRR-E 174 (293)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHH-H
Confidence 234566667766643444678886665 567778889999999999999999998555 4
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+.++..+.++.++|||++||.++.+..+|+ +|.+++.|.++..|.
T Consensus 175 ~~~~l~~l~~~g~~tvlissH~l~e~~~~~d--~v~il~~G~~~~~g~ 220 (293)
T COG1131 175 IWELLRELAKEGGVTILLSTHILEEAEELCD--RVIILNDGKIIAEGT 220 (293)
T ss_pred HHHHHHHHHhCCCcEEEEeCCcHHHHHHhCC--EEEEEeCCEEEEeCC
Confidence 5688888877645899999999999999988 999999999998874
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.4e-19 Score=189.03 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=127.4
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-------------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI------------------- 1052 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i------------------- 1052 (1288)
+.|++++...-+ +++.|..+++|++ .+|++++|+||+|+|||||||+|+|+.-
T Consensus 7 ~~I~vr~v~~~f-------G~~~Ild~v~l~V-~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 7 PLIEVRGVTKSF-------GDRVILDGVDLDV-PRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred ceEEEeeeeeec-------CCEEEecCceeee-cCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHH
Confidence 456666554322 3578999999999 8999999999999999999999998541
Q ss_pred -----HhhcCcccc--ccccccchHHHH----------------------HHhcCchhh-HhhcccchHHHHHH-HHHHH
Q 000778 1053 -----LAQVGADVP--AEIFEISPVDRI----------------------FVRMGAKDH-IMAGQSTFLTELSE-TALML 1101 (1288)
Q Consensus 1053 -----laq~G~~vP--a~~~~l~~~d~i----------------------~~~ig~~d~-i~~~~Stf~~e~~~-~~~il 1101 (1288)
.-++|...- |-...+.+++++ +..+|.... .....|.++++|++ ++.+.
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHH
Confidence 111221110 111223333322 122344444 34446778888864 67777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1102 SSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1102 ~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
++|.+|+||++|||++|.||.....+ ..++..|.+..++|++++|||++-+...++ +|.++..+.++..|+.
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~D--rv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIAD--RVAVLADGKVIAEGTP 230 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhc--eEEEEeCCEEEEeCCH
Confidence 88999999999999999999965544 477888888889999999999999999999 9999999999988853
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.7e-19 Score=188.59 Aligned_cols=161 Identities=17% Similarity=0.242 Sum_probs=115.7
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcc----cccccccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGAD----VPAEIFEI 1067 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~----vPa~~~~l 1067 (1288)
+-.+.||++|++ .+|++++|+||||+||||++++|.|+.-. ++.|.. ++.-...+
T Consensus 16 Gl~Al~~Vsl~v-~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~l 94 (250)
T COG0411 16 GLTAVNDVSLEV-RPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGL 94 (250)
T ss_pred CEEEEeceeEEE-cCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCC
Confidence 457899999999 89999999999999999999999985421 122210 00011112
Q ss_pred chHHHH---------------------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEe
Q 000778 1068 SPVDRI---------------------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLD 1113 (1288)
Q Consensus 1068 ~~~d~i---------------------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLD 1113 (1288)
++++.+ +.++|..+........++ ++++.+-.+.++|++|.|||||
T Consensus 95 TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLD 174 (250)
T COG0411 95 TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLD 174 (250)
T ss_pred cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEec
Confidence 222222 222222222222223333 4555556667789999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1114 ELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1114 Epg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
||.+|.++.+...++ .++..+.+..+.+++++.|++.++..+++ +|.+++.|.++.+|++
T Consensus 175 EPaAGln~~e~~~l~-~~i~~i~~~~g~tillIEHdM~~Vm~l~d--ri~Vl~~G~~IAeG~P 234 (250)
T COG0411 175 EPAAGLNPEETEELA-ELIRELRDRGGVTILLIEHDMKLVMGLAD--RIVVLNYGEVIAEGTP 234 (250)
T ss_pred CccCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEEeccHHHhhhcc--EEEeccCCcCcccCCH
Confidence 999999999988876 56777877668999999999999999999 9999999999988863
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-18 Score=185.11 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=121.0
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH----------------HhhcCccccccc---cccchHHH
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------LAQVGADVPAEI---FEISPVDR 1072 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i----------------laq~G~~vPa~~---~~l~~~d~ 1072 (1288)
+..+.+|++|.+ .+|++++++||||+||||++|+|.++.- +-+.-.|+|.+. ..+.+.|+
T Consensus 14 ~k~av~~isf~v-~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dq 92 (300)
T COG4152 14 DKKAVDNISFEV-PPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQ 92 (300)
T ss_pred ceeeecceeeee-cCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHH
Confidence 357899999999 8999999999999999999999998652 122234778765 34555555
Q ss_pred H---------------------HHhcCchhhHhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHH
Q 000778 1073 I---------------------FVRMGAKDHIMAGQSTFLTELS-ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAES 1130 (1288)
Q Consensus 1073 i---------------------~~~ig~~d~i~~~~Stf~~e~~-~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~a 1130 (1288)
+ +.|+++.+.......+++.+++ .+..|.+.+++|.|||||||++|.||.....+-.+
T Consensus 93 l~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~ 172 (300)
T COG4152 93 LKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDA 172 (300)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHH
Confidence 3 2333333333334455665554 46677778999999999999999999987766655
Q ss_pred HHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1131 VLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1131 ile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|.+ +.+ .|.||||+||-++-+..+|+ +++.++.|..|-.|+
T Consensus 173 I~~-lk~-~GatIifSsH~Me~vEeLCD--~llmL~kG~~V~~G~ 213 (300)
T COG4152 173 IFE-LKE-EGATIIFSSHRMEHVEELCD--RLLMLKKGQTVLYGT 213 (300)
T ss_pred HHH-HHh-cCCEEEEecchHHHHHHHhh--hhheecCCceEEecc
Confidence 555 544 49999999999999999999 899999998887764
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-18 Score=185.10 Aligned_cols=152 Identities=22% Similarity=0.185 Sum_probs=114.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh-----cC----------ccccccccccc---------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-----VG----------ADVPAEIFEIS--------- 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq-----~G----------~~vPa~~~~l~--------- 1068 (1288)
..++.||+|++ .+|++++|+||+|||||||||.|+|+.-... .| .+|+++.+-++
T Consensus 16 ~~vl~~i~L~v-~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~ 94 (248)
T COG1116 16 VEVLEDINLSV-EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVA 94 (248)
T ss_pred eEEeccceeEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhhe
Confidence 57899999999 8899999999999999999999999652110 01 23444333222
Q ss_pred ---------------hHHHHHHhcCchhhHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 000778 1069 ---------------PVDRIFVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVL 1132 (1288)
Q Consensus 1069 ---------------~~d~i~~~ig~~d~i~~~~Stf~~e~~~-~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ail 1132 (1288)
....++..+|..+.-......+|++|++ ++.+.+++.+|.++|||||+...|.+-...+-..++
T Consensus 95 l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~ 174 (248)
T COG1116 95 LGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL 174 (248)
T ss_pred ehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHH
Confidence 2334555666666666667778888875 667777899999999999988888887666655555
Q ss_pred HHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1133 EHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1133 e~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
+ +.++.+.|+||||||.+.|..+++ +|+++..+
T Consensus 175 ~-lw~~~~~TvllVTHdi~EAv~Lsd--Rivvl~~~ 207 (248)
T COG1116 175 R-LWEETRKTVLLVTHDVDEAVYLAD--RVVVLSNR 207 (248)
T ss_pred H-HHHhhCCEEEEEeCCHHHHHhhhC--EEEEecCC
Confidence 5 445568999999999999999999 88887663
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.9e-18 Score=174.61 Aligned_cols=155 Identities=21% Similarity=0.226 Sum_probs=109.9
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh--------------------cCccccccc---cc-----
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ--------------------VGADVPAEI---FE----- 1066 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq--------------------~G~~vPa~~---~~----- 1066 (1288)
...|++|.. ..|++++|.||||+||||+||+|+.+.++.+ +|.. +.+. ++
T Consensus 17 AvrdVSF~a-e~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl-~~e~glY~RlT~rE 94 (245)
T COG4555 17 AVRDVSFEA-EEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL-FGERGLYARLTARE 94 (245)
T ss_pred hhhheeEEe-ccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee-cCCcChhhhhhHHH
Confidence 578999998 8899999999999999999999998765433 2211 1000 01
Q ss_pred -cchHHH---------------HHHhcCchhhHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1067 -ISPVDR---------------IFVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1067 -l~~~d~---------------i~~~ig~~d~i~~~~Stf~~e~~~-~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
+.+|-+ +..+++..+.+......|+.+|++ ++.+.+++.+|+++|||||++|.|-.... ...
T Consensus 95 nl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r-~~~ 173 (245)
T COG4555 95 NLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRR-KFH 173 (245)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHH-HHH
Confidence 111111 122344444445555566766654 56666789999999999997777666433 344
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.++.++.+ .|..+||+||.++.+..+|| +|+++|.|.++..|+
T Consensus 174 dfi~q~k~-egr~viFSSH~m~EvealCD--rvivlh~Gevv~~gs 216 (245)
T COG4555 174 DFIKQLKN-EGRAVIFSSHIMQEVEALCD--RVIVLHKGEVVLEGS 216 (245)
T ss_pred HHHHHhhc-CCcEEEEecccHHHHHHhhh--eEEEEecCcEEEcCC
Confidence 66666654 38899999999999999999 999999998887653
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-17 Score=196.43 Aligned_cols=282 Identities=18% Similarity=0.156 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEeCCceeeee-ccccccCCCCCcEEEE-----eeecCcEEEeChHHHHHHHHHHHHH
Q 000778 853 EASLTKHLKEQRKLLGDTSITYVTIGKDLYLLE-VPESLRGSVPRDYELR-----SSKKGFFRYWTPNIKKLLGELSQAE 926 (1288)
Q Consensus 853 ~~~L~~~l~~~~~~l~~~~i~~~~~~~~~y~i~-v~~~~~~~~p~~~~~~-----ss~~~~~ry~tp~l~~l~~~l~~~~ 926 (1288)
..||+++|+++.. .++.++|+||++. |.. ..|++. .-..++..|.... +...+.....
T Consensus 189 i~WLe~~L~~~~g-------tviiVSHDR~FLd~V~t-------~I~~ld~g~l~~y~Gny~~~~~~r--~~~~~~~~~~ 252 (530)
T COG0488 189 IEWLEDYLKRYPG-------TVIVVSHDRYFLDNVAT-------HILELDRGKLTPYKGNYSSYLEQK--AERLRQEAAA 252 (530)
T ss_pred HHHHHHHHHhCCC-------cEEEEeCCHHHHHHHhh-------heEEecCCceeEecCCHHHHHHHH--HHHHHHHHHH
Confidence 3688888875432 3677889999872 211 111111 1122233332222 1111222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccce---ecCCC-CCCCCeEEEecCCCC
Q 000778 927 SEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPV---ILDSC-SNEEPYISAKSLGHP 1002 (1288)
Q Consensus 927 ~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~---~~~~~-~~~~~~l~i~~~rHP 1002 (1288)
.+..+...+-++.++.++......-.++-..+..|+-+.+-........ --+|. |.+.. .....++.+++....
T Consensus 253 ~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~--~~~~~~~~f~~~~~~~g~~vl~~~~~~~~ 330 (530)
T COG0488 253 YEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVE--EGKPLAFRFPPPGKRLGKLVLEFENVSKG 330 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhccccc--ccccceeeccCCcccCCCeeEEEeccccc
Confidence 2223333344666777777776666777778888887775322111110 01111 11111 012334444433222
Q ss_pred ccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCc----------ccccccccc----c
Q 000778 1003 VLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA----------DVPAEIFEI----S 1068 (1288)
Q Consensus 1003 ~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~----------~vPa~~~~l----~ 1068 (1288)
+ ..++.+..+++|.+ .+|+.++|+||||+|||||||.|++..-.. .|. |+++....+ .
T Consensus 331 y------~~~~~l~~~~s~~i-~~g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g~~v~igyf~Q~~~~l~~~~t 402 (530)
T COG0488 331 Y------DGGRLLLKDLSFRI-DRGDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGETVKIGYFDQHRDELDPDKT 402 (530)
T ss_pred c------CCCceeecCceEEe-cCCCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeCCceEEEEEEehhhhcCccCc
Confidence 1 12257999999999 789999999999999999999997633211 232 223322111 2
Q ss_pred hHHH---------------HHHhcCc-hhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHH
Q 000778 1069 PVDR---------------IFVRMGA-KDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1069 ~~d~---------------i~~~ig~-~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ai 1131 (1288)
+++. .+.+++. .+.+.....++| +|..++..+..++.+|.||||||| |+++|..++- .
T Consensus 403 ~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEP---TNhLDi~s~~--a 477 (530)
T COG0488 403 VLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP---TNHLDIESLE--A 477 (530)
T ss_pred HHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCC---CccCCHHHHH--H
Confidence 2222 2233332 233344556666 577788888888999999999999 9999988653 4
Q ss_pred HHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1132 le~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
|+.....+..++||||||..++...+. ++..+..
T Consensus 478 Le~aL~~f~Gtvl~VSHDr~Fl~~va~--~i~~~~~ 511 (530)
T COG0488 478 LEEALLDFEGTVLLVSHDRYFLDRVAT--RIWLVED 511 (530)
T ss_pred HHHHHHhCCCeEEEEeCCHHHHHhhcc--eEEEEcC
Confidence 555556678899999999999999887 6655543
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-17 Score=191.42 Aligned_cols=158 Identities=17% Similarity=0.160 Sum_probs=116.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
..+++|++|++ .+|++++|+||||||||||||+|+|+... .+.-.|+|+... .+.+.
T Consensus 20 ~~~l~~vsl~i-~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~ 98 (306)
T PRK13537 20 KLVVDGLSFHV-QRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVR 98 (306)
T ss_pred eEEEecceEEE-eCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHH
Confidence 46899999999 78999999999999999999999985411 111235565431 22233
Q ss_pred HHH---------------------HHhcCchhhHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 DRI---------------------FVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d~i---------------------~~~ig~~d~i~~~~Stf~~e~-~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+.+ +..++..+.......++|++| ++++.+.+++.+|+|||||||++|.|+..... .
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~-l 177 (306)
T PRK13537 99 ENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHL-M 177 (306)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHH-H
Confidence 322 222333333333445666554 56777888899999999999999999986554 4
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.++..+.++ |+|+|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 178 ~~~l~~l~~~-g~till~sH~l~e~~~~~d--~i~il~~G~i~~~g~ 221 (306)
T PRK13537 178 WERLRSLLAR-GKTILLTTHFMEEAERLCD--RLCVIEEGRKIAEGA 221 (306)
T ss_pred HHHHHHHHhC-CCEEEEECCCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 5677777654 8999999999999999998 999999999988775
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.7e-18 Score=174.49 Aligned_cols=160 Identities=19% Similarity=0.238 Sum_probs=123.1
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--------------------HHhhcC-cccccccc---cc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVG-ADVPAEIF---EI 1067 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--------------------ilaq~G-~~vPa~~~---~l 1067 (1288)
.+.|.||++|.+ .+|++++|.||||+||||.+-+|.|++ .-|++| .|+|++.. .+
T Consensus 16 kr~Vv~~Vsl~v-~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~L 94 (243)
T COG1137 16 KRKVVNDVSLEV-NSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKL 94 (243)
T ss_pred CeeeeeeeeEEE-cCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcC
Confidence 578999999999 899999999999999999999999865 236666 57787652 34
Q ss_pred chHHHHHHhcCchh-----------------------hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1068 SPVDRIFVRMGAKD-----------------------HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1068 ~~~d~i~~~ig~~d-----------------------~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
++.|.|..-+.... -..+...++| +|.+++-.+.++|.+|+++|||||++|.||..
T Consensus 95 tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPia 174 (243)
T COG1137 95 TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174 (243)
T ss_pred cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchh
Confidence 45555443222111 0011112233 57777777777889999999999999999997
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
...| ..++.+|..+ |.-||++-|+...+..+++ +..+++.|.++.+|++
T Consensus 175 V~dI-q~iI~~L~~r-giGvLITDHNVREtL~i~d--RaYIi~~G~vla~G~p 223 (243)
T COG1137 175 VIDI-QRIIKHLKDR-GIGVLITDHNVRETLDICD--RAYIISDGKVLAEGSP 223 (243)
T ss_pred HHHH-HHHHHHHHhC-CceEEEccccHHHHHhhhh--eEEEEecCeEEecCCH
Confidence 6655 4788899665 9999999999999999998 8999999999998864
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-17 Score=189.96 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=116.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
..+++|++|++ .+|++++|+||||||||||||+|+|+... .+.-.|+|+... .+++.
T Consensus 6 ~~~l~~vs~~i-~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKV-REGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 46789999999 78999999999999999999999985411 111234554421 11222
Q ss_pred H---------------------HHHHhcCchhhHhhcccchHHH-HHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 D---------------------RIFVRMGAKDHIMAGQSTFLTE-LSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d---------------------~i~~~ig~~d~i~~~~Stf~~e-~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+ .++..+|..+......+++|++ .++++.+.+++.+|++||||||++|.|+..... .
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~-l 163 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRA-I 163 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH-H
Confidence 2 2334445544444455667754 456777788899999999999999999886554 4
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.++..+.++ |.++|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 164 ~~~l~~~~~~-g~tvi~~sH~~~~~~~~~d--~v~~l~~G~i~~~g~ 207 (302)
T TIGR01188 164 WDYIRALKEE-GVTILLTTHYMEEADKLCD--RIAIIDHGRIIAEGT 207 (302)
T ss_pred HHHHHHHHhC-CCEEEEECCCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 5677777654 8999999999999999998 899999999887764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-17 Score=176.25 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=116.9
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcccccc-----------ccccchHHHHHHhcCchhh
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE-----------IFEISPVDRIFVRMGAKDH 1082 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~-----------~~~l~~~d~i~~~ig~~d~ 1082 (1288)
.++++++|.+ .+|++++|+||||+|||||||+|+|+.- +..|...... ...++++.+++..+|..+.
T Consensus 13 ~~l~~~~~~i-~~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~ 90 (180)
T cd03214 13 TVLDDLSLSI-EAGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHL 90 (180)
T ss_pred eeEeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhH
Confidence 5788999998 7899999999999999999999998643 3344221110 1134555557778888777
Q ss_pred HhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCc
Q 000778 1083 IMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPR 1161 (1288)
Q Consensus 1083 i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~ 1161 (1288)
+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ ..++..+.++.++++|++||+++.+..+++ +
T Consensus 91 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~-~~~l~~~~~~~~~tiii~sh~~~~~~~~~d--~ 167 (180)
T cd03214 91 ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIEL-LELLRRLARERGKTVVMVLHDLNLAARYAD--R 167 (180)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--E
Confidence 766667777 555667888888999999999999999988765544 466666655447899999999999888888 8
Q ss_pred eEEeeeEEEEe
Q 000778 1162 VSLCHMACQVG 1172 (1288)
Q Consensus 1162 v~~~~~~~~~~ 1172 (1288)
+.+++.|.++.
T Consensus 168 ~~~l~~g~i~~ 178 (180)
T cd03214 168 VILLKDGRIVA 178 (180)
T ss_pred EEEEECCEEEe
Confidence 88888776553
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-17 Score=192.13 Aligned_cols=158 Identities=19% Similarity=0.165 Sum_probs=116.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
..+++|++|++ .+|++++|+||||||||||||+|+|+... .+.-.|+|+... .+.+.
T Consensus 54 ~~~l~~is~~i-~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~ 132 (340)
T PRK13536 54 KAVVNGLSFTV-ASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVR 132 (340)
T ss_pred EEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHH
Confidence 46899999999 78999999999999999999999985411 111235554421 22233
Q ss_pred HHH---------------------HHhcCchhhHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 DRI---------------------FVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d~i---------------------~~~ig~~d~i~~~~Stf~~e~-~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+.+ +.+++..+.......++|++| ++++.+.+++.+|++||||||++|.|+.....+
T Consensus 133 e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l- 211 (340)
T PRK13536 133 ENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI- 211 (340)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-
Confidence 322 223333333333455677555 456777788999999999999999998865544
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.++..+.+. |.|+|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 212 ~~~l~~l~~~-g~tilisSH~l~e~~~~~d--~i~il~~G~i~~~g~ 255 (340)
T PRK13536 212 WERLRSLLAR-GKTILLTTHFMEEAERLCD--RLCVLEAGRKIAEGR 255 (340)
T ss_pred HHHHHHHHhC-CCEEEEECCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 5677777654 8999999999999999999 999999999988775
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-17 Score=175.79 Aligned_cols=160 Identities=20% Similarity=0.236 Sum_probs=127.9
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH------------------------HHhhcCcc------cc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV------------------------ILAQVGAD------VP 1061 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~------------------------ilaq~G~~------vP 1061 (1288)
++.++.||+|.+ ..|++++|+||+|+|||||||+|.+++ +.+++|+. ||
T Consensus 16 ~~~aL~~Vnl~I-~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~ 94 (258)
T COG3638 16 GHQALKDVNLEI-NQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVP 94 (258)
T ss_pred CceeeeeEeEEe-CCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCccc
Confidence 568999999999 789999999999999999999999854 23555532 33
Q ss_pred ccc-------cc----------cchH---H-----HHHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1062 AEI-------FE----------ISPV---D-----RIFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1062 a~~-------~~----------l~~~---d-----~i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
..+ .. ++++ | ..+.++|..+...+..+++++ ++++++.+.+++.+|.++|.|||
T Consensus 95 r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEP 174 (258)
T COG3638 95 RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEP 174 (258)
T ss_pred ccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCc
Confidence 221 01 1111 1 236688888888888899984 56678888889999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+..||..... .+.+|..+.++.|.|+|+.-|+.+++..+++ +|+-+..|.++.+|.
T Consensus 175 vasLDp~~a~~-Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~--Riigl~~G~ivfDg~ 231 (258)
T COG3638 175 VASLDPESAKK-VMDILKDINQEDGITVIVNLHQVDLAKKYAD--RIIGLKAGRIVFDGP 231 (258)
T ss_pred ccccChhhHHH-HHHHHHHHHHHcCCEEEEEechHHHHHHHHh--hheEecCCcEEEeCC
Confidence 88888886554 4577888888889999999999999999999 999999999988874
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.9e-18 Score=193.36 Aligned_cols=174 Identities=19% Similarity=0.221 Sum_probs=122.7
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------hhcCcccccc
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------AQVGADVPAE 1063 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------aq~G~~vPa~ 1063 (1288)
+.|+|++.++-+- +..+..|++|++ .+|+++.|+||+||||||+||+|||+.-. .+.-..+|..
T Consensus 4 ~~l~i~~v~k~yg-------~~~av~~isl~i-~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 4 PALEIRNVSKSFG-------DFTAVDDISLDI-KKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE 75 (352)
T ss_pred ceEEEEeeeeecC-------CeeEEecceeee-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh
Confidence 4567776544332 468899999999 88999999999999999999999996532 1111224443
Q ss_pred ccccchHH---HHHHhcCchhhHhhc--------------------------------ccchH-HHHHHHHHHHHhCCCC
Q 000778 1064 IFEISPVD---RIFVRMGAKDHIMAG--------------------------------QSTFL-TELSETALMLSSATRN 1107 (1288)
Q Consensus 1064 ~~~l~~~d---~i~~~ig~~d~i~~~--------------------------------~Stf~-~e~~~~~~il~~a~~~ 1107 (1288)
.-.++++- .+|.+|.+.+|+.-+ .+.+| ++.++++.+.+++.+|
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P 155 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEP 155 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCc
Confidence 33333221 244455555554333 23334 4566788899999999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1108 SLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1108 sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
.+||||||.+..|..-...+. .-+..+.++.|.|+||+|||.+.+..+++ +|.+|+.|++...|++
T Consensus 156 ~vLLLDEPlSaLD~kLR~~mr-~Elk~lq~~~giT~i~VTHDqeEAl~msD--rI~Vm~~G~I~Q~gtP 221 (352)
T COG3842 156 KVLLLDEPLSALDAKLREQMR-KELKELQRELGITFVYVTHDQEEALAMSD--RIAVMNDGRIEQVGTP 221 (352)
T ss_pred chhhhcCcccchhHHHHHHHH-HHHHHHHHhcCCeEEEEECCHHHHhhhcc--ceEEccCCceeecCCH
Confidence 999999994444444344443 44555667789999999999999999999 9999999999887753
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.9e-17 Score=178.44 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=110.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~d 1071 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+... ..++.+
T Consensus 13 ~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 91 (213)
T cd03259 13 VRALDDLSLTV-EPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAE 91 (213)
T ss_pred eeeecceeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHH
Confidence 35789999999 78999999999999999999999986421 011134454321 122222
Q ss_pred H---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1072 R---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1072 ~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
. ++..++..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l-~ 170 (213)
T cd03259 92 NIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL-R 170 (213)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 2 2233333333333345566 555667788888999999999999888888765544 4
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
.++..+.++.+.++|++||+.+++..+++ +|..++.|.++.
T Consensus 171 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d--~v~~l~~G~i~~ 211 (213)
T cd03259 171 EELKELQRELGITTIYVTHDQEEALALAD--RIAVMNEGRIVQ 211 (213)
T ss_pred HHHHHHHHHcCCEEEEEecCHHHHHHhcC--EEEEEECCEEEe
Confidence 66666655447899999999999888888 888888877654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-17 Score=181.00 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=112.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~ 1066 (1288)
..+.+|++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .
T Consensus 13 ~~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (235)
T cd03261 13 RTVLKGVDLDV-RRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDS 91 (235)
T ss_pred EEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCC
Confidence 35789999999 78999999999999999999999985411 111234554421 1
Q ss_pred cchHHHH----------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1067 ISPVDRI----------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1067 l~~~d~i----------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+++.+.+ +.++|..+......+.+| ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 92 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 171 (235)
T cd03261 92 LTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA 171 (235)
T ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 2222222 223333333333345566 45567788888899999999999988888875
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+ ..++..+.++.++++|++||+++.+..+++ +|.+++.|.++..+
T Consensus 172 ~~~l-~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d--~v~~l~~G~i~~~g 219 (235)
T cd03261 172 SGVI-DDLIRSLKKELGLTSIMVTHDLDTAFAIAD--RIAVLYDGKIVAEG 219 (235)
T ss_pred HHHH-HHHHHHHHHhcCcEEEEEecCHHHHHHhcC--EEEEEECCeEEEec
Confidence 5544 466666655447899999999999988888 89899888877655
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.9e-17 Score=178.20 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=113.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
..+++|++|++ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+... .+.+.
T Consensus 13 ~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (220)
T cd03265 13 FEAVRGVSFRV-RRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGW 91 (220)
T ss_pred EEeeeceeEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHH
Confidence 35789999999 78999999999999999999999986411 011124454421 11222
Q ss_pred H---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 D---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+ .++..++..+.+......+| ++.++++.+.+++.+|+|+|||||++|.|+.....+
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l- 170 (220)
T cd03265 92 ENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV- 170 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH-
Confidence 2 22334444444444455566 566677888889999999999999888888765544
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..++..+.++.++++|++||+.+.+..+++ ++.++..|.++..+
T Consensus 171 ~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d--~i~~l~~G~i~~~~ 214 (220)
T cd03265 171 WEYIEKLKEEFGMTILLTTHYMEEAEQLCD--RVAIIDHGRIIAEG 214 (220)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEeCCEEEEeC
Confidence 466666665457899999999999998888 88888888877654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-17 Score=174.84 Aligned_cols=159 Identities=15% Similarity=0.220 Sum_probs=121.3
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH----------------------------HHhhcCcccccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV----------------------------ILAQVGADVPAE 1063 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~----------------------------ilaq~G~~vPa~ 1063 (1288)
+..+.+|++|++ ..|++++++||+||||||+||+|..++ ++-|+|.| |..
T Consensus 13 ~~~av~~v~l~I-~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLF-Ph~ 90 (309)
T COG1125 13 NKKAVDDVNLTI-EEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLF-PHL 90 (309)
T ss_pred CceeeeeeeEEe-cCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccC-CCc
Confidence 467899999999 889999999999999999999999754 12333433 221
Q ss_pred c-----cccc------------hHHHHHHhcCch--hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1064 I-----FEIS------------PVDRIFVRMGAK--DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1064 ~-----~~l~------------~~d~i~~~ig~~--d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
. +.++ -.+.++..+|.. +...+..+.+| ++.+++..+.++|.+|.++|||||+...||..
T Consensus 91 Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~ 170 (309)
T COG1125 91 TVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPIT 170 (309)
T ss_pred cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhh
Confidence 1 1111 134455556654 34555566676 56667888888999999999999999999998
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
...+-.. +..+.++.+.|++|||||++.|..+++ +|.+|..|.++..++
T Consensus 171 R~~lQ~e-~~~lq~~l~kTivfVTHDidEA~kLad--ri~vm~~G~i~Q~~~ 219 (309)
T COG1125 171 RKQLQEE-IKELQKELGKTIVFVTHDIDEALKLAD--RIAVMDAGEIVQYDT 219 (309)
T ss_pred HHHHHHH-HHHHHHHhCCEEEEEecCHHHHHhhhc--eEEEecCCeEEEeCC
Confidence 7776544 445778889999999999999999999 999999998876553
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=180.53 Aligned_cols=158 Identities=19% Similarity=0.117 Sum_probs=114.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------hhcCccccccccc---cchHH---
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------AQVGADVPAEIFE---ISPVD--- 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------aq~G~~vPa~~~~---l~~~d--- 1071 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+.... ..+.+
T Consensus 25 ~~il~~isl~i-~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 103 (257)
T PRK11247 25 RTVLNQLDLHI-PAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVG 103 (257)
T ss_pred cceeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHH
Confidence 46889999999 78999999999999999999999986421 0111244443211 12222
Q ss_pred ------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc
Q 000778 1072 ------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHK 1138 (1288)
Q Consensus 1072 ------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~ 1138 (1288)
.++..+|..+.+....+.+| ++.++++.+.+++.+|+++|||||++|.|+.....+ ..++..+.++
T Consensus 104 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~~~~~ 182 (257)
T PRK11247 104 LGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM-QDLIESLWQQ 182 (257)
T ss_pred hcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHH
Confidence 23444555554445556676 455667788888999999999999888888765544 4566666554
Q ss_pred cCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1139 VQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1139 ~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.++++|++||+++++..+++ +|.+++.|.++..+
T Consensus 183 ~~~tviivsHd~~~~~~~~d--~i~~l~~G~i~~~~ 216 (257)
T PRK11247 183 HGFTVLLVTHDVSEAVAMAD--RVLLIEEGKIGLDL 216 (257)
T ss_pred cCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEeec
Confidence 57899999999999888888 88888888877654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-15 Score=192.08 Aligned_cols=153 Identities=21% Similarity=0.200 Sum_probs=106.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----------hcCccccccc-c----ccchH-------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----------QVGADVPAEI-F----EISPV------- 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----------q~G~~vPa~~-~----~l~~~------- 1070 (1288)
..+.+|++|.+ .+|++++|+||||||||||||+|+|+.... .+ .|+|+.. . ...++
T Consensus 325 ~~il~~isl~i-~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i-gy~~Q~~~~~l~~~~~~~~~~~~~~ 402 (638)
T PRK10636 325 RIILDSIKLNL-VPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKL-GYFAQHQLEFLRADESPLQHLARLA 402 (638)
T ss_pred eeeeccceEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEE-EEecCcchhhCCccchHHHHHHHhC
Confidence 56899999999 789999999999999999999999864210 12 2444431 0 01111
Q ss_pred --------HHHHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccC
Q 000778 1071 --------DRIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQ 1140 (1288)
Q Consensus 1071 --------d~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~ 1140 (1288)
..++.+++.. +......+++| +|.++++.+..++.+|.|||||||++|.|+.....+ .+.|. ..+
T Consensus 403 ~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l----~~~L~-~~~ 477 (638)
T PRK10636 403 PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQAL----TEALI-DFE 477 (638)
T ss_pred chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH----HHHHH-HcC
Confidence 1233444543 23445566777 455677778888999999999999777776644433 33332 235
Q ss_pred cEEEEEcCCchhhhhhcCCCceEEeeeEEEE-ecC
Q 000778 1141 CRGLFSTHYHRLAVDYKKDPRVSLCHMACQV-GNG 1174 (1288)
Q Consensus 1141 ~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~-~~g 1174 (1288)
.|+|+||||.+++..+++ +|.+++.|.++ ..|
T Consensus 478 gtvi~vSHd~~~~~~~~d--~i~~l~~G~i~~~~g 510 (638)
T PRK10636 478 GALVVVSHDRHLLRSTTD--DLYLVHDGKVEPFDG 510 (638)
T ss_pred CeEEEEeCCHHHHHHhCC--EEEEEECCEEEEcCC
Confidence 699999999999999998 88888888765 444
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.4e-17 Score=179.74 Aligned_cols=158 Identities=18% Similarity=0.216 Sum_probs=112.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-----------------------HhhcCcccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------------LAQVGADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-----------------------laq~G~~vPa~~~---~ 1066 (1288)
..+.++++|++ .+|++++|+||||||||||||+|+|+.- +.+...|+|+... .
T Consensus 15 ~~il~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 15 KQALKNINLNI-NPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93 (243)
T ss_pred cceeecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence 45889999999 7899999999999999999999998531 0111234554321 1
Q ss_pred cchHHHH-----------------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1067 ISPVDRI-----------------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1067 l~~~d~i-----------------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
+++.+.+ +..+|..+.+......+| ++.++++.+.+++.+|++||||||+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 173 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 2222222 233344433344445666 4556678888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ ..++..+.++.++++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 174 ~~LD~~~~~~l-~~~l~~~~~~~~~tiii~tH~~~~~~~~~d--~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 174 ASLDPKTSKQV-MDYLKRINKEDGITVIINLHQVDLAKKYAD--RIVGLKAGEIVFDG 228 (243)
T ss_pred ccCCHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhcC--eEEEEECCEEEecC
Confidence 88888755544 466777755447899999999999988888 88888888776554
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.2e-17 Score=176.63 Aligned_cols=157 Identities=14% Similarity=0.124 Sum_probs=111.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh------------------hcCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA------------------QVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila------------------q~G~~vPa~~~---~l~~~d 1071 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-.. +.-.|+|+... ..++.+
T Consensus 13 ~~~l~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (213)
T cd03301 13 VTALDDLNLDI-ADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYD 91 (213)
T ss_pred eeeeeceEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHH
Confidence 35788999999 789999999999999999999999864210 01124443321 112222
Q ss_pred ---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1072 ---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1072 ---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
.++.++|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ .
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l-~ 170 (213)
T cd03301 92 NIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQM-R 170 (213)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 22334444444444455666 455567777888999999999999888888865544 4
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
.++..+.++.++++|++||+.+.+..+++ ++.+++.|.++..
T Consensus 171 ~~l~~~~~~~~~tvi~~sH~~~~~~~~~d--~i~~l~~g~~~~~ 212 (213)
T cd03301 171 AELKRLQQRLGTTTIYVTHDQVEAMTMAD--RIAVMNDGQIQQI 212 (213)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcC--eEEEEECCEEEec
Confidence 56666665458899999999999888888 8888888876643
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.9e-17 Score=178.75 Aligned_cols=157 Identities=20% Similarity=0.125 Sum_probs=111.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------hhcCcccccccc---ccchHHH--
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------AQVGADVPAEIF---EISPVDR-- 1072 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------aq~G~~vPa~~~---~l~~~d~-- 1072 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+... .+...|+|+... ..++.+.
T Consensus 17 ~~il~~vs~~i-~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 95 (220)
T cd03293 17 VTALEDISLSV-EEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVA 95 (220)
T ss_pred eEEEeceeEEE-eCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHH
Confidence 36789999999 78999999999999999999999986421 011134554321 1222222
Q ss_pred -------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 000778 1073 -------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVL 1132 (1288)
Q Consensus 1073 -------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ail 1132 (1288)
++.+++..+.+....+.+| ++.++++.+.+++.+|+++|||||++|.|+.....+ +.++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~-~~~l 174 (220)
T cd03293 96 LGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL-QEEL 174 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHH-HHHH
Confidence 2333444444444455666 455677888888999999999999888888866554 4566
Q ss_pred HHHHhccCcEEEEEcCCchhhhhhcCCCceEEee--eEEEEec
Q 000778 1133 EHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH--MACQVGN 1173 (1288)
Q Consensus 1133 e~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~--~~~~~~~ 1173 (1288)
..+.++.+.++|++||+.+.+..+++ ++.+++ .|.++..
T Consensus 175 ~~~~~~~~~tiii~sH~~~~~~~~~d--~i~~l~~~~G~i~~~ 215 (220)
T cd03293 175 LDIWRETGKTVLLVTHDIDEAVFLAD--RVVVLSARPGRIVAE 215 (220)
T ss_pred HHHHHHcCCEEEEEecCHHHHHHhCC--EEEEEECCCCEEEEE
Confidence 66654447899999999998888888 888887 5776654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.4e-17 Score=187.61 Aligned_cols=159 Identities=16% Similarity=0.114 Sum_probs=119.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~ 1066 (1288)
..+++|++|++ .+|++++|+||||||||||||+|+++.-. .+.-.++|+... .
T Consensus 18 ~~~L~~vsl~i-~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~ 96 (343)
T TIGR02314 18 IQALNNVSLHV-PAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccccc
Confidence 36899999999 78999999999999999999999985410 111234444321 1
Q ss_pred cchHH---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1067 ISPVD---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1067 l~~~d---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.++.+ .++..+|..+......+.+| ++.++++.+.+++++|++||||||++|.|+...
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~ 176 (343)
T TIGR02314 97 RTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 12222 23444555555555566777 455678888889999999999999888888865
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+ ..++..+.++.|.|+|++||+++.+..+++ +|.+++.|.++..|.
T Consensus 177 ~~i-~~lL~~l~~~~g~tiiliTH~~~~v~~~~d--~v~vl~~G~iv~~g~ 224 (343)
T TIGR02314 177 QSI-LELLKEINRRLGLTILLITHEMDVVKRICD--CVAVISNGELIEQGT 224 (343)
T ss_pred HHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 554 477777876668999999999999999998 999999999987764
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=174.43 Aligned_cols=155 Identities=15% Similarity=0.153 Sum_probs=111.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~d 1071 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+... ..++.+
T Consensus 13 ~~~l~~~~~~i-~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 91 (208)
T cd03268 13 KRVLDDISLHV-KKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARE 91 (208)
T ss_pred eEeEeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHH
Confidence 36889999998 78999999999999999999999985310 111235554421 122222
Q ss_pred H-----------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHH
Q 000778 1072 R-----------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLE 1133 (1288)
Q Consensus 1072 ~-----------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile 1133 (1288)
. ++.+++..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ ..++.
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~ 170 (208)
T cd03268 92 NLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKEL-RELIL 170 (208)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH-HHHHH
Confidence 2 2334444444444445555 556677888888999999999999888888765544 46677
Q ss_pred HHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1134 HFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1134 ~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
++.+ .+.++|++||+.+++..+++ ++..++.|.++.
T Consensus 171 ~~~~-~~~tii~~tH~~~~~~~~~d--~v~~l~~g~i~~ 206 (208)
T cd03268 171 SLRD-QGITVLISSHLLSEIQKVAD--RIGIINKGKLIE 206 (208)
T ss_pred HHHH-CCCEEEEEcCCHHHHHHhcC--EEEEEECCEEEe
Confidence 7765 47899999999999988888 888888887654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=177.82 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=113.5
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---cc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---EI 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~l 1067 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+...|+|+... .+
T Consensus 19 ~il~~~s~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (233)
T cd03258 19 TALKDVSLSV-PKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred eeeecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence 6788999999 78999999999999999999999985410 111234554421 12
Q ss_pred chHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1068 SPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1068 ~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
++.+. ++.+++..+.+....+.++ ++.++++.+.+++.+|+++|||||++|.|+....
T Consensus 98 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 177 (233)
T cd03258 98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177 (233)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHH
Confidence 22332 2333444444444455666 5556788888899999999999998888888655
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.+ +.++..+.++.++++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 178 ~l-~~~l~~~~~~~~~tvii~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 223 (233)
T cd03258 178 SI-LALLRDINRELGLTIVLITHEMEVVKRICD--RVAVMEKGEVVEEG 223 (233)
T ss_pred HH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEec
Confidence 44 456666655447899999999999988888 88888888877654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.9e-17 Score=185.48 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=114.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
..++++++|++ .+|++++|+||||||||||||+|+|+... .+.-.|+|+... .+++.
T Consensus 17 ~~~l~~vsl~i-~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 95 (303)
T TIGR01288 17 KVVVNDLSFTI-ARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVR 95 (303)
T ss_pred eEEEcceeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHH
Confidence 46899999999 78999999999999999999999985411 111235554421 12333
Q ss_pred HHH---------------------HHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 DRI---------------------FVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d~i---------------------~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+.+ +..++..+.......++|+ +.++++.+.+++.+|++||||||++|.|+.....+
T Consensus 96 e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l- 174 (303)
T TIGR01288 96 ENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI- 174 (303)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-
Confidence 332 2223333333334456664 45567778888999999999999999988865544
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.++..+.++ |.++|++||+++.+..+++ ++.+++.|.++..|+
T Consensus 175 ~~~l~~~~~~-g~til~~sH~~~~~~~~~d--~i~~l~~G~i~~~g~ 218 (303)
T TIGR01288 175 WERLRSLLAR-GKTILLTTHFMEEAERLCD--RLCVLESGRKIAEGR 218 (303)
T ss_pred HHHHHHHHhC-CCEEEEECCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 4667777554 8899999999999999898 899999998887664
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.9e-17 Score=175.38 Aligned_cols=151 Identities=17% Similarity=0.187 Sum_probs=110.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------------hhcCcccccccc--
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------------AQVGADVPAEIF-- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------------aq~G~~vPa~~~-- 1065 (1288)
..++++++|.+ .+|++++|+||+||||||||.+|+++.-. .++| ||.+...
T Consensus 18 ~~~L~~v~l~i-~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iG-fvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEI-EAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIG-FVFQNFNLL 95 (226)
T ss_pred eEecccceEEE-cCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEE-EECccCCCC
Confidence 46899999999 89999999999999999999999985411 1222 2322211
Q ss_pred -ccch---------------------HHHHHHhcCchhhHh-hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1066 -EISP---------------------VDRIFVRMGAKDHIM-AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1066 -~l~~---------------------~d~i~~~ig~~d~i~-~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
.+++ ...++.++|..+... ...+.+| +|.++++.+.+++.+|++||.||||...|.
T Consensus 96 ~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~ 175 (226)
T COG1136 96 PDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDS 175 (226)
T ss_pred CCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCCh
Confidence 1111 223445556666655 5566676 567788888999999999999999666666
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEE
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMAC 1169 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~ 1169 (1288)
..+..+ ..++..+.++.|.|+|+||||.+++.. ++ ++..++.|.
T Consensus 176 ~t~~~V-~~ll~~~~~~~g~tii~VTHd~~lA~~-~d--r~i~l~dG~ 219 (226)
T COG1136 176 KTAKEV-LELLRELNKERGKTIIMVTHDPELAKY-AD--RVIELKDGK 219 (226)
T ss_pred HHHHHH-HHHHHHHHHhcCCEEEEEcCCHHHHHh-CC--EEEEEeCCe
Confidence 656654 467777877779999999999999884 55 777777775
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.2e-17 Score=173.31 Aligned_cols=155 Identities=19% Similarity=0.153 Sum_probs=116.2
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh-----cC----------------ccccccc-----ccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-----VG----------------ADVPAEI-----FEI 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq-----~G----------------~~vPa~~-----~~l 1067 (1288)
.+.|+|+|++ .+|++++|+|++|||||||.|+|+|+.-..+ .| -.|+++. ...
T Consensus 21 ~~l~~VS~~i-~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~ 99 (252)
T COG1124 21 HALNNVSLEI-ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR 99 (252)
T ss_pred hhhcceeEEe-cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcch
Confidence 5899999999 8999999999999999999999999652211 01 1222221 111
Q ss_pred ch-------------------HHHHHHhcCchhhHhh-cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH--H
Q 000778 1068 SP-------------------VDRIFVRMGAKDHIMA-GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD--G 1124 (1288)
Q Consensus 1068 ~~-------------------~d~i~~~ig~~d~i~~-~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D--g 1124 (1288)
++ ...++..+|....... ....|+ +++++++.+.+++.+|++||+||| |+.+| .
T Consensus 100 tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEp---tSaLD~si 176 (252)
T COG1124 100 TVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEP---TSALDVSV 176 (252)
T ss_pred hHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCc---hhhhcHHH
Confidence 11 2234455555443332 334455 678899999999999999999999 66666 4
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
++..+.+|.++.++.+.|.||+|||..++..+|+ +|.+|..|.+++.+
T Consensus 177 Qa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cd--Ri~Vm~~G~ivE~~ 224 (252)
T COG1124 177 QAQILNLLLELKKERGLTYLFISHDLALVEHMCD--RIAVMDNGQIVEIG 224 (252)
T ss_pred HHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhh--heeeeeCCeEEEee
Confidence 5556788888888889999999999999999999 99999999988764
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-17 Score=173.18 Aligned_cols=152 Identities=23% Similarity=0.284 Sum_probs=117.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcC-ccccccccccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVG-ADVPAEIFEISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G-~~vPa~~~~l~~~d 1071 (1288)
..++.+|+|.+ ..|++++|+||||+|||||||+|+|++-. +..| +|||.. .
T Consensus 16 ~~~L~gvsl~v-~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPeg-------R 87 (237)
T COG0410 16 IQALRGVSLEV-ERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEG-------R 87 (237)
T ss_pred eeEEeeeeeEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCccc-------c
Confidence 57899999999 88999999999999999999999996521 2222 344432 3
Q ss_pred HHHHhcCchhhHhhc-------------------------------ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1072 RIFVRMGAKDHIMAG-------------------------------QSTFL-TELSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1072 ~i~~~ig~~d~i~~~-------------------------------~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
+||.++.+++|+..+ ..++| +|.+.++...+++.+|+|+|||||+-|+
T Consensus 88 ~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GL 167 (237)
T COG0410 88 RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL 167 (237)
T ss_pred cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCc
Confidence 345555554444432 23444 4666677778889999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1120 s~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+|.=...|. .++..|.++.+.|||+|.++..++..++| +.+++..|.++.+|.
T Consensus 168 aP~iv~~I~-~~i~~l~~~~g~tIlLVEQn~~~Al~iaD--r~yvle~Griv~~G~ 220 (237)
T COG0410 168 APKIVEEIF-EAIKELRKEGGMTILLVEQNARFALEIAD--RGYVLENGRIVLSGT 220 (237)
T ss_pred CHHHHHHHH-HHHHHHHHcCCcEEEEEeccHHHHHHhhC--EEEEEeCCEEEEecC
Confidence 999665554 67777876667899999999999999999 888999999988774
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=188.48 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=117.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------hh-cCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------AQ-VGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------aq-~G~~vPa~~~---~l~~~d 1071 (1288)
..+++|++|++ .+|++++|+||||||||||||+|+|+.-. .+ .-.|||+..+ .+++.+
T Consensus 17 ~~~l~~vsl~i-~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~e 95 (356)
T PRK11650 17 TQVIKGIDLDV-ADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRE 95 (356)
T ss_pred CEEEeeeeEEE-cCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHH
Confidence 46889999999 78999999999999999999999996421 00 1124444321 122222
Q ss_pred ---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1072 ---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1072 ---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
.++..+|..+.+.....++| ++.++++.+.+++.+|+|||||||++|.|+.-...+.
T Consensus 96 Ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~- 174 (356)
T PRK11650 96 NMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMR- 174 (356)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-
Confidence 23344455544444555666 5666788888899999999999998888877655544
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+..+.++.+.++|++||+.+.+..+++ +|.+++.|.++..|+
T Consensus 175 ~~l~~l~~~~g~tii~vTHd~~ea~~l~D--~i~vl~~G~i~~~g~ 218 (356)
T PRK11650 175 LEIQRLHRRLKTTSLYVTHDQVEAMTLAD--RVVVMNGGVAEQIGT 218 (356)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEeCCEEEEECC
Confidence 55666766668999999999999999998 999999999987764
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.9e-17 Score=176.95 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=105.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc---
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF--- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~--- 1065 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+...
T Consensus 17 ~~il~~~s~~i-~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 17 VQALKGVSLSI-EKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred eeEEeeeEEEE-cCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence 46789999999 78999999999999999999999985411 111234443321
Q ss_pred ccchHH---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1066 EISPVD---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1066 ~l~~~d---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+.+.+ .++..+|..+.+.....+++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 175 (218)
T cd03255 96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175 (218)
T ss_pred CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHH
Confidence 112211 23334444444444445566 45566788888999999999999999988875
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
... ...++..+.++.++++|++||+.+.+. +++ ++.+++.|
T Consensus 176 ~~~-l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d--~v~~l~~G 216 (218)
T cd03255 176 GKE-VMELLRELNKEAGTTIVVVTHDPELAE-YAD--RIIELRDG 216 (218)
T ss_pred HHH-HHHHHHHHHHhcCCeEEEEECCHHHHh-hhc--EEEEeeCC
Confidence 444 456677776534789999999999886 777 77777655
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=177.81 Aligned_cols=158 Identities=19% Similarity=0.215 Sum_probs=112.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~ 1066 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .
T Consensus 14 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T cd03256 14 KKALKDVSLSI-NPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER 92 (241)
T ss_pred cEEEecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence 46889999999 78999999999999999999999985411 011234554321 1
Q ss_pred cchHHHH-----------------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1067 ISPVDRI-----------------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1067 l~~~d~i-----------------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
+++.+.+ +..++..+.+......++ ++.++++.+.+++.+|++||||||+
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 172 (241)
T cd03256 93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV 172 (241)
T ss_pred CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 2222222 222333333333344565 5666778888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ ..++..+.++.|+++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 173 ~~LD~~~~~~l-~~~l~~~~~~~~~tii~~tH~~~~~~~~~d--~v~~l~~G~i~~~~ 227 (241)
T cd03256 173 ASLDPASSRQV-MDLLKRINREEGITVIVSLHQVDLAREYAD--RIVGLKDGRIVFDG 227 (241)
T ss_pred ccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEeec
Confidence 88888755544 466777765458899999999999988888 88888888776554
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=175.98 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=107.2
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---cc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---EI 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~l 1067 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .+
T Consensus 17 ~il~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (216)
T TIGR00960 17 PALDNLNFHI-TKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR 95 (216)
T ss_pred eEEEeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence 5889999999 78999999999999999999999985310 111234554421 12
Q ss_pred chHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1068 SPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1068 ~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
++.+. ++..+|..+.+.....+++ ++.++++.+.+++.+|+++|||||++|.|+....
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 175 (216)
T TIGR00960 96 TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSR 175 (216)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 22222 2333444444444445566 5666788888899999999999998888887665
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
.+. .++..+.+. ++++|++||+.+++..+++ ++..++.|
T Consensus 176 ~l~-~~l~~~~~~-~~tii~vsH~~~~~~~~~d--~i~~l~~G 214 (216)
T TIGR00960 176 DIM-RLFEEFNRR-GTTVLVATHDINLVETYRH--RTLTLSRG 214 (216)
T ss_pred HHH-HHHHHHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEeCC
Confidence 544 566666554 8899999999999988887 77777655
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=174.95 Aligned_cols=153 Identities=15% Similarity=0.135 Sum_probs=108.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------hhcCccccccc----cccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------AQVGADVPAEI----FEISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------aq~G~~vPa~~----~~l~~~d 1071 (1288)
..+.++++|++ .+|++++|+||||||||||||+|+|+.-. .+.-.|+|+.. ...++.+
T Consensus 13 ~~~l~~v~~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 13 TEILDDLSLDL-YAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred CceeeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence 35788999998 78999999999999999999999985410 11123455442 1112222
Q ss_pred H-----------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHH
Q 000778 1072 R-----------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLE 1133 (1288)
Q Consensus 1072 ~-----------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile 1133 (1288)
. ++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ ..++.
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~ 170 (205)
T cd03226 92 ELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV-GELIR 170 (205)
T ss_pred HHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH-HHHHH
Confidence 2 2333444433333445566 455667777888999999999999999998765544 46677
Q ss_pred HHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEE
Q 000778 1134 HFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQ 1170 (1288)
Q Consensus 1134 ~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~ 1170 (1288)
.+.++ +.++|++||+++.+..+++ ++..++.|.+
T Consensus 171 ~~~~~-~~tii~~sH~~~~~~~~~d--~i~~l~~G~i 204 (205)
T cd03226 171 ELAAQ-GKAVIVITHDYEFLAKVCD--RVLLLANGAI 204 (205)
T ss_pred HHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEE
Confidence 77554 8899999999999988888 7888877754
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-16 Score=180.74 Aligned_cols=158 Identities=16% Similarity=0.120 Sum_probs=113.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc---
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF--- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~--- 1065 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. .+...|+|+...
T Consensus 37 ~~il~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 115 (269)
T cd03294 37 TVGVNDVSLDV-REGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLP 115 (269)
T ss_pred ceEeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCC
Confidence 45788999999 78999999999999999999999986411 011234444321
Q ss_pred ccchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1066 EISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1066 ~l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+.+.+. ++..+|..+.+......++ ++.++++.+.+++.+|++||||||++|.|+..
T Consensus 116 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~ 195 (269)
T cd03294 116 HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLI 195 (269)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 1122222 2334444444444455666 55566788888899999999999998888876
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+ ..++..+.++.|.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 196 ~~~l-~~~l~~~~~~~g~tiii~tH~~~~~~~~~d--~v~~l~~G~i~~~g 243 (269)
T cd03294 196 RREM-QDELLRLQAELQKTIVFITHDLDEALRLGD--RIAIMKDGRLVQVG 243 (269)
T ss_pred HHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhcC--EEEEEECCEEEEeC
Confidence 5544 466666655447899999999999888888 88888888776554
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=176.99 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=110.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhc-Ccccccccc---ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQV-GADVPAEIF---EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~-G~~vPa~~~---~l~ 1068 (1288)
..++++++|++ .+|++++|+||||||||||||+|+|+... .+. -.|+|+... .+.
T Consensus 13 ~~~l~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (236)
T cd03219 13 LVALDDVSFSV-RPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELT 91 (236)
T ss_pred EEEecCceEEe-cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCC
Confidence 35788999998 78999999999999999999999986411 011 134554321 122
Q ss_pred hHHHH-------------------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1069 PVDRI-------------------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1069 ~~d~i-------------------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
+.+.+ +..+|....+....++++ ++.++++.+.+++.+|+++|||||+
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 171 (236)
T cd03219 92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPA 171 (236)
T ss_pred HHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 22222 222333333333344555 4556678888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+..... .+.++..+.+ .++++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 172 ~~LD~~~~~~-l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d--~i~~l~~G~i~~~~ 225 (236)
T cd03219 172 AGLNPEETEE-LAELIRELRE-RGITVLLVEHDMDVVMSLAD--RVTVLDQGRVIAEG 225 (236)
T ss_pred ccCCHHHHHH-HHHHHHHHHH-CCCEEEEEecCHHHHHHhCC--EEEEEeCCEEEeec
Confidence 8888875554 4466666655 48899999999999988888 88889888877654
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=173.44 Aligned_cols=155 Identities=18% Similarity=0.199 Sum_probs=108.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------hhcCcccccccc---ccchHHH-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------AQVGADVPAEIF---EISPVDR- 1072 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------aq~G~~vPa~~~---~l~~~d~- 1072 (1288)
..+.++++|++ .+|++++|+||||+||||||++|+|+... ...-.|+|+... .+++.+.
T Consensus 13 ~~~l~~v~~~i-~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 91 (210)
T cd03269 13 VTALDDISFSV-EKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQL 91 (210)
T ss_pred EEEEeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHH
Confidence 35788999998 78999999999999999999999986421 011124444321 1222222
Q ss_pred --------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHH
Q 000778 1073 --------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1073 --------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ai 1131 (1288)
++..+|....+......++ ++.++++.+++++.+|+++|||||++|.|+.....+ ..+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~-~~~ 170 (210)
T cd03269 92 VYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELL-KDV 170 (210)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-HHH
Confidence 2223333333333334455 556667788888999999999999999998765544 356
Q ss_pred HHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1132 le~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
++.+.++ ++++|++||+.+++..+++ ++..++.|.++.
T Consensus 171 l~~~~~~-~~tii~~sH~~~~~~~~~d--~i~~l~~g~i~~ 208 (210)
T cd03269 171 IRELARA-GKTVILSTHQMELVEELCD--RVLLLNKGRAVL 208 (210)
T ss_pred HHHHHHC-CCEEEEECCCHHHHHHhhh--EEEEEeCCEEEe
Confidence 6666554 7899999999999888887 888888776653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=176.12 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=110.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------h-hcCcccccccc---ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------A-QVGADVPAEIF---EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------a-q~G~~vPa~~~---~l~ 1068 (1288)
..++++++|.+ .+|++++|+||||||||||||+|+|+.-. . +.-.|+|+... .++
T Consensus 13 ~~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (232)
T cd03218 13 RKVVNGVSLSV-KQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLT 91 (232)
T ss_pred EEeeccceeEe-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCc
Confidence 35789999998 78999999999999999999999986411 0 11124444321 112
Q ss_pred hHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 000778 1069 PVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1288)
Q Consensus 1069 ~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~a 1126 (1288)
+.+. ++..++..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 171 (232)
T cd03218 92 VEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD 171 (232)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 2222 2223333333333344565 55566788888999999999999988888876554
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1127 IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1127 ia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+ ..++..+.+. +.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 172 ~-~~~l~~~~~~-~~tii~~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 215 (232)
T cd03218 172 I-QKIIKILKDR-GIGVLITDHNVRETLSITD--RAYIIYEGKVLAEG 215 (232)
T ss_pred H-HHHHHHHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEECCeEEEEe
Confidence 4 4667777654 7899999999999888888 88888888776544
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=189.62 Aligned_cols=158 Identities=20% Similarity=0.217 Sum_probs=117.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc---ccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF---EISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~---~l~~ 1069 (1288)
..++++++|.+ .+|++++|+||||+|||||||+|+|+... ++.-.+||+... .+++
T Consensus 16 ~~vL~~vs~~i-~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv 94 (402)
T PRK09536 16 TTVLDGVDLSV-REGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDV 94 (402)
T ss_pred EEEEEeeEEEE-CCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCH
Confidence 46899999999 78999999999999999999999985411 111234554321 1222
Q ss_pred HH-------------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1070 VD-------------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1070 ~d-------------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+ .++..+|..+........+| +|.++++.+.+++.+|++||||||++|.|+..
T Consensus 95 ~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~ 174 (402)
T PRK09536 95 RQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINH 174 (402)
T ss_pred HHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 22 22334444444444455666 56667788888999999999999988888875
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
...+ ..+|..+.++ +.|+|++||+++++..+++ ++.+++.|.++..|.
T Consensus 175 ~~~l-~~lL~~l~~~-g~TIIivsHdl~~~~~~ad--rii~l~~G~iv~~G~ 222 (402)
T PRK09536 175 QVRT-LELVRRLVDD-GKTAVAAIHDLDLAARYCD--ELVLLADGRVRAAGP 222 (402)
T ss_pred HHHH-HHHHHHHHhc-CCEEEEEECCHHHHHHhCC--EEEEEECCEEEEecC
Confidence 5544 4777778654 7899999999999999999 999999999987765
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-16 Score=174.17 Aligned_cols=151 Identities=19% Similarity=0.159 Sum_probs=107.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc----ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF----EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~----~l~ 1068 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+... ...
T Consensus 14 ~~il~~vs~~i-~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 14 RPALDDISLTI-KKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT 92 (211)
T ss_pred eeeecceEEEE-cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence 35788999998 78999999999999999999999985411 111234554421 112
Q ss_pred hHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 000778 1069 PVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1288)
Q Consensus 1069 ~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~a 1126 (1288)
+.+. ++..++..+.+....+.++ ++.++++.+.+++.+|+|+|||||++|.|+.....
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 172 (211)
T cd03225 93 VEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172 (211)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 2222 2333444444444456666 45566788888899999999999988888886555
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1127 IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1127 ia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
+. .++..+.++ ++++|++||+.+.+..+++ ++.+++.|
T Consensus 173 ~~-~~l~~~~~~-~~tvi~~sH~~~~~~~~~d--~i~~l~~G 210 (211)
T cd03225 173 LL-ELLKKLKAE-GKTIIIVTHDLDLLLELAD--RVIVLEDG 210 (211)
T ss_pred HH-HHHHHHHHc-CCEEEEEeCCHHHHHHhCC--EEEEEeCC
Confidence 44 566666655 8899999999999988887 77666543
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=186.98 Aligned_cols=159 Identities=15% Similarity=0.134 Sum_probs=116.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~ 1066 (1288)
..+++|++|++ .+|++++|+||||||||||||+|+|+.-. .+.-.|+|+... .
T Consensus 18 ~~il~~vsl~i-~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~ 96 (343)
T PRK11153 18 IHALNNVSLHI-PAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEEeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCC
Confidence 46889999999 78999999999999999999999986410 111234554321 1
Q ss_pred cchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1067 ISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1067 l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
+++.+. ++..+|..+.+....+.+| ++.++++.+.+++.+|++||||||++|.|+...
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~ 176 (343)
T PRK11153 97 RTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 222222 2333444444444456666 455667788888999999999999888888755
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+ +.+|..+.++.|.++|++||+++.+..+++ +|.+++.|.++..|.
T Consensus 177 ~~l-~~~L~~l~~~~g~tiilvtH~~~~i~~~~d--~v~~l~~G~i~~~g~ 224 (343)
T PRK11153 177 RSI-LELLKDINRELGLTIVLITHEMDVVKRICD--RVAVIDAGRLVEQGT 224 (343)
T ss_pred HHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 544 466777765558899999999999998898 899999998887653
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-16 Score=186.82 Aligned_cols=160 Identities=16% Similarity=0.131 Sum_probs=118.6
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------H----hhcCccccccccc-
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------L----AQVGADVPAEIFE- 1066 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------l----aq~G~~vPa~~~~- 1066 (1288)
+..+++|++|++ .+|++++|+||||||||||||+|+|+.- + .+.-.|||+...-
T Consensus 5 ~~~~l~~vs~~i-~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 5 GKKGVNDADLAI-AKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CceeEEeeEEEE-cCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 346789999999 7899999999999999999999998541 0 1122355544321
Q ss_pred --cchHHH---------------------HHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1067 --ISPVDR---------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1067 --l~~~d~---------------------i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
+++.+. ++..+|....+......+|+ +.++++.+.+++.+|++||||||++|.|+.
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 222222 33444554445555666775 455677888899999999999999999998
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
-...+. .++..+.+..+.|+||+||+++.+..+++ +|.++..|.++..|+
T Consensus 164 ~r~~l~-~~l~~l~~~~~~Tii~vTHd~~ea~~~~d--rI~vl~~G~iv~~g~ 213 (363)
T TIGR01186 164 IRDSMQ-DELKKLQATLQKTIVFITHDLDEAIRIGD--RIVIMKAGEIVQVGT 213 (363)
T ss_pred HHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEeCCEEEeeCC
Confidence 766655 44555655558899999999999999898 999999999987764
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-16 Score=182.39 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=115.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH----------------------HhhcCccccccc----cc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------------LAQVGADVPAEI----FE 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i----------------------laq~G~~vPa~~----~~ 1066 (1288)
..+++|++|++ .+|++++|+||||||||||||+|+|+.- +.+...|||+.. ..
T Consensus 20 ~~~l~~vs~~i-~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 98 (287)
T PRK13637 20 KKALDNVNIEI-EDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFE 98 (287)
T ss_pred cceeeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccc
Confidence 36899999999 7899999999999999999999998531 111224566542 11
Q ss_pred cchHHH---------------------HHHhcCch--hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1067 ISPVDR---------------------IFVRMGAK--DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1067 l~~~d~---------------------i~~~ig~~--d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
..+.+. ++..+|.. +........++ ++.++++.+.+++.+|++||||||++|.|+.
T Consensus 99 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~ 178 (287)
T PRK13637 99 ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178 (287)
T ss_pred ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHH
Confidence 222222 23334443 22333445566 4556677778889999999999999999887
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.... .+.++..+.++.|.|+|++||+++++..+++ +|.+++.|.++..|
T Consensus 179 ~~~~-l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d--rv~~l~~G~i~~~g 227 (287)
T PRK13637 179 GRDE-ILNKIKELHKEYNMTIILVSHSMEDVAKLAD--RIIVMNKGKCELQG 227 (287)
T ss_pred HHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEC
Confidence 5554 4567777766558899999999999988888 99999999887665
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-16 Score=173.73 Aligned_cols=154 Identities=18% Similarity=0.147 Sum_probs=110.0
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCccccccc---cccchHH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEI---FEISPVD 1071 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~---~~l~~~d 1071 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+.. ..+++.+
T Consensus 19 ~il~~~sl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (218)
T cd03266 19 QAVDGVSFTV-KPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARE 97 (218)
T ss_pred eeecceEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHH
Confidence 5788999998 78999999999999999999999986421 01112444432 1122222
Q ss_pred H---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1072 R---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1072 ~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
. ++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ .
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~ 176 (218)
T cd03266 98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRAL-R 176 (218)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHH-H
Confidence 2 2334444444444445555 566678888888999999999999888888765544 4
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
.++..+.++ ++++|++||+.+.+..+++ ++..++.|.++.
T Consensus 177 ~~l~~~~~~-~~tii~~tH~~~~~~~~~d--~i~~l~~G~i~~ 216 (218)
T cd03266 177 EFIRQLRAL-GKCILFSTHIMQEVERLCD--RVVVLHRGRVVY 216 (218)
T ss_pred HHHHHHHHC-CCEEEEEeCCHHHHHHhcC--EEEEEECCEEee
Confidence 666666554 8899999999999888888 888888776654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=186.07 Aligned_cols=173 Identities=13% Similarity=0.100 Sum_probs=123.3
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh-----------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----------------- 1054 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----------------- 1054 (1288)
+.|.+++..+-+- +..++++++|++ .+|++++|+||||||||||||+|+|+.-..
T Consensus 5 ~~l~~~~l~~~~~-------~~~~l~~isl~i-~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~ 76 (351)
T PRK11432 5 NFVVLKNITKRFG-------SNTVIDNLNLTI-KQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ 76 (351)
T ss_pred cEEEEEeEEEEEC-------CeEEEeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH
Confidence 3566666554331 246789999999 789999999999999999999999864210
Q ss_pred -hcCcccccccc---ccchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCc
Q 000778 1055 -QVGADVPAEIF---EISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNS 1108 (1288)
Q Consensus 1055 -q~G~~vPa~~~---~l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~s 1108 (1288)
..-.+|++..+ .+.+.+. ++..+|..+........+| ++.++++.+.+++.+|+
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~ 156 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPK 156 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 01124444332 1222332 2233344333333445555 56677888889999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1109 LVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1109 LvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|+|||||++|.|+.-...+. ..+..+.++.+.|+|++|||.+.+..+++ +|.+++.|.++..|+
T Consensus 157 lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~tii~vTHd~~e~~~laD--~i~vm~~G~i~~~g~ 220 (351)
T PRK11432 157 VLLFDEPLSNLDANLRRSMR-EKIRELQQQFNITSLYVTHDQSEAFAVSD--TVIVMNKGKIMQIGS 220 (351)
T ss_pred EEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 99999998888887666544 56666766668999999999999999998 999999999987764
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-16 Score=176.35 Aligned_cols=156 Identities=13% Similarity=0.140 Sum_probs=108.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCccccccc----cccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEI----FEISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~----~~l~~ 1069 (1288)
..++++++|.+ .+|++++|+||||+|||||||+|+|+... .+...|+|+.. ..+++
T Consensus 34 ~~il~~vs~~i-~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTI-EKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 56899999999 78999999999999999999999986411 01112444221 11222
Q ss_pred HHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1070 VDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1070 ~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.+. ++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 192 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 222 1222233333333344555 455667777888999999999999888888866654
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
. .++..+.++.++++|++||+++++..+++ ++..++.|.++.
T Consensus 193 ~-~~l~~~~~~~~~tiiivsH~~~~~~~~~d--~i~~l~~G~i~~ 234 (236)
T cd03267 193 R-NFLKEYNRERGTTVLLTSHYMKDIEALAR--RVLVIDKGRLLY 234 (236)
T ss_pred H-HHHHHHHhcCCCEEEEEecCHHHHHHhCC--EEEEEeCCEEEe
Confidence 4 56666655557899999999999988888 888888776654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=187.39 Aligned_cols=173 Identities=15% Similarity=0.194 Sum_probs=124.3
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------h
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------A 1054 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------a 1054 (1288)
+.|.+++.+.-+- +..+.++++|++ .+|++++|+||||||||||||+|+|+.-. .
T Consensus 13 ~~L~l~~l~~~~~-------~~~~l~~vsl~i-~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 13 PLVELRGISKSFD-------GKEVISNLDLTI-NNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE 84 (375)
T ss_pred ceEEEEEEEEEEC-------CeEEEeeeEEEE-eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH
Confidence 4577776654331 235789999999 78999999999999999999999996421 0
Q ss_pred h-cCcccccccc---ccchHHHH---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCc
Q 000778 1055 Q-VGADVPAEIF---EISPVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNS 1108 (1288)
Q Consensus 1055 q-~G~~vPa~~~---~l~~~d~i---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~s 1108 (1288)
+ ...+|++..+ .+++.+.| +..+|..+.+.....+++ ++.++++.+.+++.+|+
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ 164 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK 164 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 0 1123444332 22333332 333344444444445565 56677888888999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1109 LVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1109 LvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|+|||||++|.|..-...+ ...|..+.++.+.++|++||+.+.+..+++ +|.+++.|.++..|+
T Consensus 165 llLLDEP~s~LD~~~r~~l-~~~L~~l~~~~g~tiI~vTHd~~ea~~laD--ri~vl~~G~i~~~g~ 228 (375)
T PRK09452 165 VLLLDESLSALDYKLRKQM-QNELKALQRKLGITFVFVTHDQEEALTMSD--RIVVMRDGRIEQDGT 228 (375)
T ss_pred EEEEeCCCCcCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 9999999888888765544 466666766668999999999999999998 999999999987664
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=178.04 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=112.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh------------------hcCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA------------------QVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila------------------q~G~~vPa~~~---~l~~~d 1071 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-.. +.-.|+|+... .+++.+
T Consensus 15 ~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 93 (239)
T cd03296 15 FVALDDVSLDI-PSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFD 93 (239)
T ss_pred EEeeeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHH
Confidence 35789999999 789999999999999999999999964210 01124444321 122222
Q ss_pred H-------------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1072 R-------------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1072 ~-------------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
. ++..+|..+.......+++ ++.++++.+.+++.+|++||||||++|.|+....
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~ 173 (239)
T cd03296 94 NVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 173 (239)
T ss_pred HHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 2 2233333333333345565 5566778888889999999999999999887655
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.+ ..++..+.++.++++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 174 ~l-~~~l~~~~~~~~~tvii~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 219 (239)
T cd03296 174 EL-RRWLRRLHDELHVTTVFVTHDQEEALEVAD--RVVVMNKGRIEQVG 219 (239)
T ss_pred HH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCC--EEEEEECCeEEEec
Confidence 44 466777765447899999999999888888 88888888877654
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.4e-17 Score=178.15 Aligned_cols=159 Identities=19% Similarity=0.173 Sum_probs=119.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh---------------------cCccccccc----ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ---------------------VGADVPAEI----FEI 1067 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq---------------------~G~~vPa~~----~~l 1067 (1288)
..+.+|++|++ .+|++++|+||||||||||+++++|+..... .-.+|.+.. ..-
T Consensus 17 ~~~l~~v~~~i-~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~ 95 (235)
T COG1122 17 KAALKDVSLEI-EKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP 95 (235)
T ss_pred ceeeeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence 47889999999 7899999999999999999999998653221 011121110 000
Q ss_pred ch---------------------HHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1068 SP---------------------VDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1068 ~~---------------------~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
.+ ++..+..+|..+.......++| +|+++++.+-.+|.+|.++||||||+|.|+.-..
T Consensus 96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~ 175 (235)
T COG1122 96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175 (235)
T ss_pred cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHH
Confidence 11 2233445566666556666666 6777888888889999999999999999988544
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
....++..|....|.|+|++||+++.+..+++ ++.+++.|.++.+|.
T Consensus 176 -~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad--~v~vl~~G~i~~~g~ 222 (235)
T COG1122 176 -ELLELLKKLKEEGGKTIIIVTHDLELVLEYAD--RVVVLDDGKILADGD 222 (235)
T ss_pred -HHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCC--EEEEEECCEEeecCC
Confidence 44578888877767899999999999999999 999999998877763
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-16 Score=186.84 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=117.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~d 1071 (1288)
..++++++|++ ..|++++|+||||||||||||+|+|+.-. .+...+|++..+ .+++.+
T Consensus 17 ~~~l~~vs~~i-~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~e 95 (353)
T TIGR03265 17 FTALKDISLSV-KKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVAD 95 (353)
T ss_pred eEEEEeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHH
Confidence 35789999998 78999999999999999999999996421 011234444432 122222
Q ss_pred ---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1072 ---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1072 ---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
.++..++..+.+......++ ++.++++.+.+++.+|+++|||||++|.|..-...+.
T Consensus 96 Ni~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~- 174 (353)
T TIGR03265 96 NIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLR- 174 (353)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-
Confidence 23334444444444455566 5666788888999999999999998888877655544
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..|..+.++.+.|+|++||+.+.+..+++ +|.+++.|.++..|+
T Consensus 175 ~~L~~l~~~~~~tvi~vTHd~~ea~~l~d--~i~vl~~G~i~~~g~ 218 (353)
T TIGR03265 175 TEIRQLQRRLGVTTIMVTHDQEEALSMAD--RIVVMNHGVIEQVGT 218 (353)
T ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 55666666668999999999999999998 999999999987764
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=177.50 Aligned_cols=158 Identities=16% Similarity=0.282 Sum_probs=112.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcC-ccccccc---cccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVG-ADVPAEI---FEIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G-~~vPa~~---~~l~ 1068 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.+ .|+|+.. ..++
T Consensus 18 ~~~l~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (255)
T PRK11300 18 LLAVNNVNLEV-REQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMT 96 (255)
T ss_pred EEEEEeeeeEE-cCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCc
Confidence 46889999999 78999999999999999999999986411 1112 2344432 1122
Q ss_pred hHHH------------------------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEE
Q 000778 1069 PVDR------------------------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVV 1111 (1288)
Q Consensus 1069 ~~d~------------------------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvL 1111 (1288)
+.+. ++..+|..+.+......++ ++.++++.+.+++.+|+++|
T Consensus 97 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 176 (255)
T PRK11300 97 VIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILM 176 (255)
T ss_pred HHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2221 1223344443444455566 55667788888899999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1112 LDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1112 LDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
||||++|.|+.....+ +.+|..+.++.++++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 177 lDEPt~~LD~~~~~~l-~~~L~~~~~~~~~tii~~sH~~~~~~~~~d--~i~~l~~g~i~~~~ 236 (255)
T PRK11300 177 LDEPAAGLNPKETKEL-DELIAELRNEHNVTVLLIEHDMKLVMGISD--RIYVVNQGTPLANG 236 (255)
T ss_pred EcCCccCCCHHHHHHH-HHHHHHHHhhcCCEEEEEeCCHHHHHHhCC--EEEEEECCeEEecC
Confidence 9999888888865544 466777765457899999999999988888 88888888776544
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=183.05 Aligned_cols=157 Identities=14% Similarity=0.137 Sum_probs=114.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-------------------HhhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------LAQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-------------------laq~G~~vPa~~~---~l~~~ 1070 (1288)
..+++|++|.+ .+|++++|+||||+|||||||+|+|+.. ..+.-.|+|+... .+++.
T Consensus 15 ~~~l~~is~~i-~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~ 93 (301)
T TIGR03522 15 QNALDEVSFEA-QKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVR 93 (301)
T ss_pred EEEEEEeEEEE-eCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHH
Confidence 46899999999 7899999999999999999999998631 1112234554421 12222
Q ss_pred HH---------------------HHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 DR---------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d~---------------------i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+. ++..+|..+......+.+++ +.++++.+.+++.+|+++|||||++|.|+..... .
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~-l 172 (301)
T TIGR03522 94 EYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVE-I 172 (301)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH-H
Confidence 22 23334444434444556664 4456777888899999999999999999885544 4
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.++..+. + +.++|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 173 ~~~l~~~~-~-~~tiii~sH~l~~~~~~~d--~i~~l~~G~i~~~g~ 215 (301)
T TIGR03522 173 RNVIKNIG-K-DKTIILSTHIMQEVEAICD--RVIIINKGKIVADKK 215 (301)
T ss_pred HHHHHHhc-C-CCEEEEEcCCHHHHHHhCC--EEEEEECCEEEEeCC
Confidence 56677774 3 6899999999999999998 999999999987764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=174.79 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=110.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCcccccccc---ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEIF---EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~~---~l~ 1068 (1288)
..+.+|++|++ .+|++++|+||||||||||||+|+|+.-. .+.-.|+|+... .+.
T Consensus 13 ~~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (230)
T TIGR03410 13 SHILRGVSLEV-PKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLT 91 (230)
T ss_pred eEEecceeeEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCc
Confidence 35789999999 78999999999999999999999986411 111235555432 112
Q ss_pred hHHHH------------------HHhcC-chhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1069 PVDRI------------------FVRMG-AKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1069 ~~d~i------------------~~~ig-~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+.+.+ ...++ ..+........++ ++.++++.+.+++.+|+++|||||++|.|+.....+
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l- 170 (230)
T TIGR03410 92 VEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI- 170 (230)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH-
Confidence 22222 11111 1112222334455 455667788888999999999999888888865544
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+.++..+.++.++|+|++||+++.+..+++ ++.+++.|.++..+
T Consensus 171 ~~~l~~~~~~~~~tii~~sH~~~~~~~~~d--~v~~l~~g~i~~~~ 214 (230)
T TIGR03410 171 GRVIRRLRAEGGMAILLVEQYLDFARELAD--RYYVMERGRVVASG 214 (230)
T ss_pred HHHHHHHHHcCCcEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEC
Confidence 466666655447899999999999988888 88888888877655
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-16 Score=176.49 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=111.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------------hhcCccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------------AQVGADVPAEI 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------------aq~G~~vPa~~ 1064 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. .+...|+|+..
T Consensus 16 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 94 (250)
T PRK11264 16 QTVLHGIDLEV-KPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNF 94 (250)
T ss_pred eeeeccceEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCc
Confidence 35889999999 78999999999999999999999985310 01123444432
Q ss_pred c---ccchHHHH----------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1065 F---EISPVDRI----------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1065 ~---~l~~~d~i----------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
. ...+.+.+ +.++|..+......+.++ ++.++++.+.+++.+|++||||||++|
T Consensus 95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~ 174 (250)
T PRK11264 95 NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSA 174 (250)
T ss_pred ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 1 12222322 222333333333345555 556677888888999999999999888
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.|+.....+ ..++..+.++ +.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 175 LD~~~~~~l-~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d--~i~~l~~G~i~~~~ 226 (250)
T PRK11264 175 LDPELVGEV-LNTIRQLAQE-KRTMVIVTHEMSFARDVAD--RAIFMDQGRIVEQG 226 (250)
T ss_pred CCHHHHHHH-HHHHHHHHhc-CCEEEEEeCCHHHHHHhcC--EEEEEECCEEEEeC
Confidence 888755544 4667777654 8899999999999988888 88899888877654
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-16 Score=178.92 Aligned_cols=158 Identities=15% Similarity=0.173 Sum_probs=113.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----------------------------hcCccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----------------------------QVGADVPAEI 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----------------------------q~G~~vPa~~ 1064 (1288)
..++++++|.+ .+|++++|+||||+|||||||+|+|+.-.. +...|+|+..
T Consensus 17 ~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 17 HQALHAVDLNI-HHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred eEEEecceEEE-cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 46889999999 789999999999999999999999865210 0113444432
Q ss_pred c---ccchHHH-----------------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEE
Q 000778 1065 F---EISPVDR-----------------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVV 1111 (1288)
Q Consensus 1065 ~---~l~~~d~-----------------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvL 1111 (1288)
. .+++.+. ++.++|..+.+......++ ++.++++.+.+++.+|+|||
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 175 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVIL 175 (262)
T ss_pred ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 1 1122222 2333444444444455566 56667788888899999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1112 LDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1112 LDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
||||++|.|+.....+ ..++..+.++.|.++|++||+++++..+++ ++.+++.|.++..|
T Consensus 176 lDEPt~~LD~~~~~~l-~~~l~~~~~~~g~tvii~tH~~~~~~~~~d--~i~~l~~g~i~~~g 235 (262)
T PRK09984 176 ADEPIASLDPESARIV-MDTLRDINQNDGITVVVTLHQVDYALRYCE--RIVALRQGHVFYDG 235 (262)
T ss_pred ecCccccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 9999888888866554 466666765447899999999999888888 88888888766544
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-16 Score=175.28 Aligned_cols=159 Identities=20% Similarity=0.208 Sum_probs=114.9
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhc-----------CccccccccccchH---HHHHHhcCc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQV-----------GADVPAEIFEISPV---DRIFVRMGA 1079 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~-----------G~~vPa~~~~l~~~---d~i~~~ig~ 1079 (1288)
.+.+||+|.+ ..|++++|+|||||||||+||+|||+.-..+- -..++.....++++ -.+|..|++
T Consensus 16 ~a~~di~l~i-~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtV 94 (345)
T COG1118 16 GALDDISLDI-KSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTV 94 (345)
T ss_pred cccccceeee-cCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchH
Confidence 4566899999 78999999999999999999999996522110 00122222233322 124556666
Q ss_pred hhhHhhcc---------------------------------cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1080 KDHIMAGQ---------------------------------STFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1080 ~d~i~~~~---------------------------------Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
.|||.-|+ ..++ ++.++++.+.++|..|++||||||+...|..-..
T Consensus 95 a~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~ 174 (345)
T COG1118 95 ADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 174 (345)
T ss_pred HhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHH
Confidence 66665543 1222 4566788888899999999999997777666444
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
.+ ..-|..+.++.|++++|+|||.+.+..+++ +|++|+.|.+...|+.
T Consensus 175 ~l-r~wLr~~~~~~~~ttvfVTHD~eea~~lad--rvvvl~~G~Ieqvg~p 222 (345)
T COG1118 175 EL-RRWLRKLHDRLGVTTVFVTHDQEEALELAD--RVVVLNQGRIEQVGPP 222 (345)
T ss_pred HH-HHHHHHHHHhhCceEEEEeCCHHHHHhhcc--eEEEecCCeeeeeCCH
Confidence 43 355666777789999999999999999999 9999999998876653
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.9e-17 Score=185.66 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=113.3
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh-----cC-------------cccccccc---ccchHHHH
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-----VG-------------ADVPAEIF---EISPVDRI 1073 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq-----~G-------------~~vPa~~~---~l~~~d~i 1073 (1288)
+.++++|.+ ..|++++|+||||||||||||+|||+.-... .| .+|++..+ .+++++.|
T Consensus 18 ~l~~i~l~i-~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Ni 96 (338)
T COG3839 18 VLKDVNLDI-EDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENI 96 (338)
T ss_pred eeecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHh
Confidence 899999999 7899999999999999999999999652110 01 12333221 22333322
Q ss_pred ---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH--HHHH
Q 000778 1074 ---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ--AIAE 1129 (1288)
Q Consensus 1074 ---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~--aia~ 1129 (1288)
...+++.+.+....+.++ ++.++++...+++.+|+++||||| ++.+|.. ....
T Consensus 97 af~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEP---lSnLDa~lR~~mr 173 (338)
T COG3839 97 AFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEP---LSNLDAKLRVLMR 173 (338)
T ss_pred hhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCc---hhHhhHHHHHHHH
Confidence 223344455555556666 566788888899999999999999 6666632 2233
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+..|.++.+.|+|++|||...+..+++ +|.+++.|.+..-|+
T Consensus 174 ~ei~~lh~~l~~T~IYVTHDq~EAmtlad--ri~Vm~~G~i~Q~g~ 217 (338)
T COG3839 174 SEIKKLHERLGTTTIYVTHDQVEAMTLAD--RIVVMNDGRIQQVGT 217 (338)
T ss_pred HHHHHHHHhcCCcEEEEcCCHHHHHhhCC--EEEEEeCCeeeecCC
Confidence 56666888889999999999999999999 999999998887664
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=187.65 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=115.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~d 1071 (1288)
..++++++|++ .+|++++|+||||||||||||+|+|+.-. .+.-.|||+... .+++.+
T Consensus 16 ~~vl~~vsl~i-~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~e 94 (369)
T PRK11000 16 VVISKDINLDI-HEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAE 94 (369)
T ss_pred eEEEeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHH
Confidence 35789999999 78999999999999999999999986421 001124554421 122222
Q ss_pred H---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1072 R---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1072 ~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
. ++..+|..+.+.....++| ++.++++.+.+++.+|+|||||||++|.|+.....+ .
T Consensus 95 ni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l-~ 173 (369)
T PRK11000 95 NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM-R 173 (369)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-H
Confidence 2 2334444444444455666 566678888889999999999999888888755544 3
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+|..+.++.+.++|++||+.+.+..+++ +|.+++.|.++..|.
T Consensus 174 ~~L~~l~~~~g~tvI~vTHd~~~~~~~~d--~i~vl~~G~i~~~g~ 217 (369)
T PRK11000 174 IEISRLHKRLGRTMIYVTHDQVEAMTLAD--KIVVLDAGRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 56666765558899999999999998898 999999999887654
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-16 Score=173.47 Aligned_cols=151 Identities=18% Similarity=0.185 Sum_probs=105.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~ 1066 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+... .
T Consensus 15 ~~il~~is~~i-~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 15 VAALHDVSLHI-RKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred ceeecceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 35889999999 78999999999999999999999986310 111234444321 1
Q ss_pred cchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1067 ISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1067 l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.++.+. ++..++..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+...
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 173 (214)
T TIGR02673 94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence 222222 2233344433334445566 556677888889999999999999888888865
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
..+. .++..+.++ +.++|++||+++.+..+++ ++.+++.|
T Consensus 174 ~~l~-~~l~~~~~~-~~tii~~tH~~~~~~~~~d--~i~~l~~G 213 (214)
T TIGR02673 174 ERIL-DLLKRLNKR-GTTVIVATHDLSLVDRVAH--RVIILDDG 213 (214)
T ss_pred HHHH-HHHHHHHHc-CCEEEEEeCCHHHHHHhcC--EEEEecCC
Confidence 5544 566666554 7899999999999988887 77666543
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-16 Score=180.38 Aligned_cols=158 Identities=18% Similarity=0.131 Sum_probs=114.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccc----cccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEI----FEIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~----~~l~ 1068 (1288)
..+.+|++|.+ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+.. ...+
T Consensus 18 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 96 (274)
T PRK13647 18 TKALKGLSLSI-PEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSST 96 (274)
T ss_pred CeeeeeEEEEE-cCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCc
Confidence 35899999999 78999999999999999999999985411 11123455432 1112
Q ss_pred hHHHH---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 000778 1069 PVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1288)
Q Consensus 1069 ~~d~i---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~a 1126 (1288)
+.+.+ +..+|..+........++ ++.++++.+.+++.+|+++|||||++|.|+.....
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~ 176 (274)
T PRK13647 97 VWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHH
Confidence 22222 223343333333445566 45566778888899999999999999988886665
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1127 IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1127 ia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+ ..++..+.++ |+|+|++||+++.+..+++ ++.+++.|.++..|.
T Consensus 177 l-~~~l~~~~~~-g~tili~tH~~~~~~~~~d--~i~~l~~G~i~~~g~ 221 (274)
T PRK13647 177 L-MEILDRLHNQ-GKTVIVATHDVDLAAEWAD--QVIVLKEGRVLAEGD 221 (274)
T ss_pred H-HHHHHHHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 4 4667677655 8999999999999988888 899999998877653
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-16 Score=172.67 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=111.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... ..++.
T Consensus 15 ~~il~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 93 (220)
T cd03263 15 KPAVDDLSLNV-YKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVR 93 (220)
T ss_pred ceeecceEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHH
Confidence 46788999999 78999999999999999999999986411 011124444321 11222
Q ss_pred H---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 D---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+ .++..++..+.+.....+++ ++.++++.+.+++.+|+++|||||++|.|+.....+
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l- 172 (220)
T cd03263 94 EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI- 172 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHH-
Confidence 2 22333444443344445565 566678888889999999999999888888755544
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..++..+.+ ++++|++||+++++..+++ ++.+++.|.++..+
T Consensus 173 ~~~l~~~~~--~~tii~~sH~~~~~~~~~d--~i~~l~~g~i~~~~ 214 (220)
T cd03263 173 WDLILEVRK--GRSIILTTHSMDEAEALCD--RIAIMSDGKLRCIG 214 (220)
T ss_pred HHHHHHHhc--CCEEEEEcCCHHHHHHhcC--EEEEEECCEEEecC
Confidence 456666643 4899999999999988888 88888888877655
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-16 Score=185.22 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=116.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh------------------hcCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA------------------QVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila------------------q~G~~vPa~~~---~l~~~d 1071 (1288)
..++++++|++ .+|++++|+||||||||||||+|+|+.-.. ..-.||++..+ .+++.+
T Consensus 15 ~~~l~~isl~i-~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~e 93 (353)
T PRK10851 15 TQVLNDISLDI-PSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFD 93 (353)
T ss_pred eEEEEEeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHH
Confidence 35889999999 789999999999999999999999964110 01124444321 112222
Q ss_pred H-------------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1072 R-------------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1072 ~-------------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
. ++..++..+........++ ++.++++.+.+++.+|+|+|||||++|.|+....
T Consensus 94 ni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~ 173 (353)
T PRK10851 94 NIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRK 173 (353)
T ss_pred HHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 2 2333444444444445566 4556688888899999999999998888888666
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+. .++..+.++.++|+|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 174 ~l~-~~L~~l~~~~g~tii~vTHd~~ea~~~~D--ri~vl~~G~i~~~g~ 220 (353)
T PRK10851 174 ELR-RWLRQLHEELKFTSVFVTHDQEEAMEVAD--RVVVMSQGNIEQAGT 220 (353)
T ss_pred HHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 544 56667766668999999999999999998 999999999887764
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-16 Score=181.39 Aligned_cols=157 Identities=14% Similarity=0.151 Sum_probs=114.5
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------------------------
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------------------------- 1053 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------------------------- 1053 (1288)
.+++|++|.+ .+|++++|+||||||||||||+|+|+...
T Consensus 21 ~~l~~vsl~i-~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (305)
T PRK13651 21 KALDNVSVEI-NQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKK 99 (305)
T ss_pred cceeeeEEEE-eCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccch
Confidence 5899999999 78999999999999999999999986411
Q ss_pred ----hhcCccccccc----cccchHH---------------------HHHHhcCch-hhHhhcccchH-HHHHHHHHHHH
Q 000778 1054 ----AQVGADVPAEI----FEISPVD---------------------RIFVRMGAK-DHIMAGQSTFL-TELSETALMLS 1102 (1288)
Q Consensus 1054 ----aq~G~~vPa~~----~~l~~~d---------------------~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~ 1102 (1288)
.+.-.|||+.. ....+.+ .++..+|.. +.......++| ++.++++.+..
T Consensus 100 ~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~a 179 (305)
T PRK13651 100 IKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI 179 (305)
T ss_pred HHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 00113555531 1112222 223344443 33444455666 45566788888
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1103 SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1103 ~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
++.+|+|+|||||++|.|+.... ....++.++.+. |+|+|++||+++.+..+++ +|.+++.|.++..|.
T Consensus 180 L~~~P~lLlLDEPt~~LD~~~~~-~l~~~l~~l~~~-g~tiiivtHd~~~~~~~ad--rv~vl~~G~i~~~g~ 248 (305)
T PRK13651 180 LAMEPDFLVFDEPTAGLDPQGVK-EILEIFDNLNKQ-GKTIILVTHDLDNVLEWTK--RTIFFKDGKIIKDGD 248 (305)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHHC-CCEEEEEeeCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 89999999999999999887544 445777777654 8999999999999988898 999999998887653
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.8e-16 Score=160.05 Aligned_cols=157 Identities=22% Similarity=0.232 Sum_probs=117.7
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-----------------------H-hhcCccccccc---
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------------L-AQVGADVPAEI--- 1064 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-----------------------l-aq~G~~vPa~~--- 1064 (1288)
+..+++||+|.+ .+|+++-||||+|||||||||+|.+..- + .|+|. |.++.
T Consensus 14 g~~aL~~vs~~i-~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGv-VFQD~rLL 91 (223)
T COG2884 14 GREALRDVSFHI-PKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGV-VFQDFRLL 91 (223)
T ss_pred CchhhhCceEee-cCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeee-Eeeecccc
Confidence 456899999999 8999999999999999999999997441 1 23442 22221
Q ss_pred cccchH---------------------HHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1065 FEISPV---------------------DRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1065 ~~l~~~---------------------d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
...+++ ...+..+|..+....-.+.+| +|.++++.+.+.+..|.|||.|||+-..||.
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~ 171 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPD 171 (223)
T ss_pred ccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChH
Confidence 111222 234556666666666667777 6888899999999999999999997777777
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
-...|. .+++.+.. .|.|||++|||.+++..+.. ++..+..|+++.+.
T Consensus 172 ~s~~im-~lfeeinr-~GtTVl~ATHd~~lv~~~~~--rvl~l~~Grl~~d~ 219 (223)
T COG2884 172 LSWEIM-RLFEEINR-LGTTVLMATHDLELVNRMRH--RVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHH-HHHHHHhh-cCcEEEEEeccHHHHHhccC--cEEEEeCCEEEecc
Confidence 554443 56677744 59999999999999998866 88888999887653
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-16 Score=186.40 Aligned_cols=159 Identities=17% Similarity=0.146 Sum_probs=116.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh-cC-------------------cccccccc---ccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-VG-------------------ADVPAEIF---EISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq-~G-------------------~~vPa~~~---~l~~ 1069 (1288)
..++++++|++ ..|++++|+||||||||||||+|+|+..... .| .+|++..+ .+++
T Consensus 18 ~~~l~~vsl~i-~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv 96 (362)
T TIGR03258 18 NTVLDDLSLEI-EAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKV 96 (362)
T ss_pred eEEEeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcH
Confidence 36899999999 7899999999999999999999998643211 02 23333321 1122
Q ss_pred HH---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1070 VD---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1070 ~d---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.+ .++..+|..+.......++| ++.++++.+.+++.+|+|||||||++|.|+.....+
T Consensus 97 ~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l 176 (362)
T TIGR03258 97 EDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM 176 (362)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 22 22333444444444445555 556678888889999999999999888888765554
Q ss_pred HHHHHHHHHhcc-CcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1128 AESVLEHFVHKV-QCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1128 a~aile~l~~~~-~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
. ..|..+.++. |.|+|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 177 ~-~~l~~l~~~~~g~til~vTHd~~ea~~l~d--ri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 177 R-EEIAALHEELPELTILCVTHDQDDALTLAD--KAGIMKDGRLAAHGE 222 (362)
T ss_pred H-HHHHHHHHhCCCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 4 5666676665 7899999999999999998 999999999987764
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-16 Score=171.63 Aligned_cols=151 Identities=18% Similarity=0.177 Sum_probs=106.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------hhcCcccccccc---cc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------AQVGADVPAEIF---EI 1067 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------aq~G~~vPa~~~---~l 1067 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+...|+|+... .+
T Consensus 13 ~~~l~~~s~~i-~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (213)
T cd03262 13 FHVLKGIDLTV-KKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL 91 (213)
T ss_pred eEeecCceEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCC
Confidence 35788999998 78999999999999999999999986411 111234554321 12
Q ss_pred chHHH----------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1068 SPVDR----------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1068 ~~~d~----------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
++.+. ++.++|....+.....+++ ++.++++.+.+++.+|+++|||||++|.|+...
T Consensus 92 t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 171 (213)
T cd03262 92 TVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171 (213)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 22222 2333444433444445566 455667788888999999999999888888755
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
.. ...++..+.+. +.++|++||+.+.+..+++ ++.+++.|
T Consensus 172 ~~-l~~~l~~~~~~-~~tvi~~sh~~~~~~~~~d--~i~~l~~g 211 (213)
T cd03262 172 GE-VLDVMKDLAEE-GMTMVVVTHEMGFAREVAD--RVIFMDDG 211 (213)
T ss_pred HH-HHHHHHHHHHc-CCEEEEEeCCHHHHHHhCC--EEEEEeCC
Confidence 44 44667777653 7899999999999988888 77776655
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-16 Score=168.55 Aligned_cols=158 Identities=19% Similarity=0.164 Sum_probs=113.2
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hcCccccccc-----ccc--------------chH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QVGADVPAEI-----FEI--------------SPV 1070 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~G~~vPa~~-----~~l--------------~~~ 1070 (1288)
....||+|.+ ++|.+++++||||+||||+||++.|+.+.. .++.++|... ..+ +..
T Consensus 38 ~AVqdisf~I-P~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEI-PKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeec-CCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 3679999999 899999999999999999999999977542 2334555431 011 100
Q ss_pred H------HH---------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 D------RI---------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d------~i---------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
| .| -.-++....+......+| +|..+.-.+.++..+|.+|+|||||-|.|..-..+|.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir 196 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence 0 01 111223333333334444 5555666677789999999999998888877655554
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+....++.+|||+.+|||+.-+..+|+ +|..++.|.++.+|+
T Consensus 197 -~Flke~n~~~~aTVllTTH~~~di~~lc~--rv~~I~~Gqlv~dg~ 240 (325)
T COG4586 197 -EFLKEYNEERQATVLLTTHIFDDIATLCD--RVLLIDQGQLVFDGT 240 (325)
T ss_pred -HHHHHHHHhhCceEEEEecchhhHHHhhh--heEEeeCCcEeeccc
Confidence 44555556679999999999999999999 999999999999875
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-16 Score=179.54 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=113.6
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCccccccc----c
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEI----F 1065 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~----~ 1065 (1288)
.+.+|++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+.. .
T Consensus 21 ~~l~~vsl~i-~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 99 (287)
T PRK13641 21 KGLDNISFEL-EEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF 99 (287)
T ss_pred cceeeeEEEE-eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence 5889999999 78999999999999999999999985311 01123555432 1
Q ss_pred ccchHHHH---------------------HHhcCch-hhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1066 EISPVDRI---------------------FVRMGAK-DHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1066 ~l~~~d~i---------------------~~~ig~~-d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
..++.+.+ +..+|.. +.......++|+ +.++++.+.+++.+|++||||||++|.|+.
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~ 179 (287)
T PRK13641 100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179 (287)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 12223322 2333443 233344456664 555677778889999999999999999987
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
....+ ..++..+.++ |.++|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 180 ~~~~l-~~~l~~l~~~-g~tvlivsH~~~~~~~~~d--~v~~l~~G~i~~~g~ 228 (287)
T PRK13641 180 GRKEM-MQLFKDYQKA-GHTVILVTHNMDDVAEYAD--DVLVLEHGKLIKHAS 228 (287)
T ss_pred HHHHH-HHHHHHHHhC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEeCC
Confidence 65544 5677777554 8899999999999999998 999999998876653
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-16 Score=172.72 Aligned_cols=154 Identities=18% Similarity=0.153 Sum_probs=107.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------h-hcCcccccccc---
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------A-QVGADVPAEIF--- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------a-q~G~~vPa~~~--- 1065 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. . +.-.|+|+...
T Consensus 18 ~~~l~~isl~i-~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 96 (221)
T TIGR02211 18 TRVLKGVSLSI-GKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLP 96 (221)
T ss_pred eEeEeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCC
Confidence 35889999999 78999999999999999999999985310 0 11235554421
Q ss_pred ccchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1066 EISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1066 ~l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
..++.+. ++..+|..+.+.....+++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 97 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 176 (221)
T TIGR02211 97 DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN 176 (221)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHH
Confidence 1222222 2333444443444445666 45566788888899999999999988888876
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEE
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQV 1171 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~ 1171 (1288)
...+ ..++..+.++.+.++|++||+++++.. ++ ++.+++.|.++
T Consensus 177 ~~~l-~~~l~~~~~~~~~tii~~tH~~~~~~~-~d--~v~~l~~G~i~ 220 (221)
T TIGR02211 177 AKII-FDLMLELNRELNTSFLVVTHDLELAKK-LD--RVLEMKDGQLF 220 (221)
T ss_pred HHHH-HHHHHHHHHhcCCEEEEEeCCHHHHhh-cC--EEEEEeCCEec
Confidence 5544 456666655457899999999998765 45 78888777543
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-16 Score=170.32 Aligned_cols=151 Identities=23% Similarity=0.227 Sum_probs=107.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------hhcCcccccccc-----ccchHHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------AQVGADVPAEIF-----EISPVDR 1072 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------aq~G~~vPa~~~-----~l~~~d~ 1072 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+... ..++.+.
T Consensus 12 ~~~l~~isl~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~ 90 (213)
T cd03235 12 HPVLEDVSFEV-KPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDV 90 (213)
T ss_pred EEeeecceeEE-cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHH
Confidence 35788999999 78999999999999999999999986411 111235554321 1122222
Q ss_pred -------------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 000778 1073 -------------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1288)
Q Consensus 1073 -------------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~a 1126 (1288)
++..++..+.+.....+++ ++.++++.+.+++.+|+++|||||++|.|+.....
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 170 (213)
T cd03235 91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQED 170 (213)
T ss_pred HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 2333444444444556666 45566777788899999999999988888886655
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1127 IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1127 ia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
+. .++..+.+ .+.++|++||+++.+..+++ ++.+++.+
T Consensus 171 l~-~~l~~~~~-~~~tvi~~sH~~~~~~~~~d--~i~~l~~~ 208 (213)
T cd03235 171 IY-ELLRELRR-EGMTILVVTHDLGLVLEYFD--RVLLLNRT 208 (213)
T ss_pred HH-HHHHHHHh-cCCEEEEEeCCHHHHHHhcC--EEEEEcCc
Confidence 54 55666655 47899999999999988888 77777654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-16 Score=174.26 Aligned_cols=157 Identities=16% Similarity=0.143 Sum_probs=110.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH---------------------HhhcCcccccccc---ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---------------------LAQVGADVPAEIF---EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i---------------------laq~G~~vPa~~~---~l~ 1068 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+.- ..+.-.|+|+... .++
T Consensus 18 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (237)
T PRK11614 18 IQALHEVSLHI-NQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMT 96 (237)
T ss_pred ceeeeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCc
Confidence 46899999999 7899999999999999999999998531 1111234454321 122
Q ss_pred hHHHH-------------------HHhc-CchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1069 PVDRI-------------------FVRM-GAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1069 ~~d~i-------------------~~~i-g~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
+.+.+ +..+ +..+.......+++ ++.++++.+.+++.+|+++|||||++|.|+.....
T Consensus 97 v~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~- 175 (237)
T PRK11614 97 VEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQ- 175 (237)
T ss_pred HHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHH-
Confidence 23322 1112 12222222334455 55667788888899999999999999988875444
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...++..+.++ ++++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 176 l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 219 (237)
T PRK11614 176 IFDTIEQLREQ-GMTIFLVEQNANQALKLAD--RGYVLENGHVVLED 219 (237)
T ss_pred HHHHHHHHHHC-CCEEEEEeCcHHHHHhhCC--EEEEEeCCEEEeeC
Confidence 44667777654 8899999999998888888 88888888877655
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-16 Score=172.78 Aligned_cols=158 Identities=17% Similarity=0.182 Sum_probs=124.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH------------------------HhhcCccccccc----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI------------------------LAQVGADVPAEI---- 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i------------------------laq~G~~vPa~~---- 1064 (1288)
..+++||+|++ .+|++++|+|.+|+|||||+|+|.++-- -.++|+ +++..
T Consensus 19 ~~al~~vsL~I-~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGM-IFQhFnLLs 96 (339)
T COG1135 19 VTALDDVSLEI-PKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGM-IFQHFNLLS 96 (339)
T ss_pred eeeeccceEEE-cCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccE-Eeccccccc
Confidence 35789999999 8999999999999999999999997431 122332 22211
Q ss_pred --------------ccc------chHHHHHHhcCchhhHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1065 --------------FEI------SPVDRIFVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1065 --------------~~l------~~~d~i~~~ig~~d~i~~~~Stf~~e~-~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.. .-+..++..+|..|......+.+|++. ++++.+.++|++|++||.||+|+..||.-
T Consensus 97 srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~T 176 (339)
T COG1135 97 SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176 (339)
T ss_pred cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHH
Confidence 000 113345677888888888888888554 56778888999999999999977777776
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+|. ++|..+.++.|.|++++||.++.+..+|+ +|.+|+.|.++..|+
T Consensus 177 T~sIL-~LL~~In~~lglTIvlITHEm~Vvk~ic~--rVavm~~G~lvE~G~ 225 (339)
T COG1135 177 TQSIL-ELLKDINRELGLTIVLITHEMEVVKRICD--RVAVLDQGRLVEEGT 225 (339)
T ss_pred HHHHH-HHHHHHHHHcCCEEEEEechHHHHHHHhh--hheEeeCCEEEEecc
Confidence 66664 77888888889999999999999999999 999999999998874
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-16 Score=173.20 Aligned_cols=153 Identities=17% Similarity=0.100 Sum_probs=108.0
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc---c
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF---E 1066 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~---~ 1066 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .
T Consensus 24 ~~l~~~s~~i-~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~ 102 (228)
T PRK10584 24 SILTGVELVV-KRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPT 102 (228)
T ss_pred EEEeccEEEE-cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCC
Confidence 4889999999 78999999999999999999999986410 011234554421 1
Q ss_pred cchHHHH---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1067 ISPVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1067 l~~~d~i---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.++.+.+ +..++..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+...
T Consensus 103 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~ 182 (228)
T PRK10584 103 LNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG 182 (228)
T ss_pred cCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 2233332 223343333334445565 566677888888999999999999999988765
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEE
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQV 1171 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~ 1171 (1288)
..+ ..++..+.++.+.++|++||+++++.. ++ ++.+++.|.++
T Consensus 183 ~~l-~~~l~~~~~~~~~tii~~sH~~~~~~~-~d--~i~~l~~g~i~ 225 (228)
T PRK10584 183 DKI-ADLLFSLNREHGTTLILVTHDLQLAAR-CD--RRLRLVNGQLQ 225 (228)
T ss_pred HHH-HHHHHHHHHhcCCEEEEEecCHHHHHh-CC--EEEEEECCEEE
Confidence 544 466666755557899999999998754 66 78888877664
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-16 Score=174.62 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=112.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccccc--cch-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIFE--ISP- 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~~--l~~- 1069 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. .+...|+|+.... ..+
T Consensus 16 ~~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (241)
T PRK14250 16 KEILKDISVKF-EGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVK 94 (241)
T ss_pred eeeeeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHH
Confidence 45789999999 78999999999999999999999985411 0112344443211 011
Q ss_pred ----------------HHHHHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHH
Q 000778 1070 ----------------VDRIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1070 ----------------~d~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ai 1131 (1288)
+..++.+++.. +........++ ++.++++.+.+++.+|+++|||||++|.|+..... ...+
T Consensus 95 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~-l~~~ 173 (241)
T PRK14250 95 DNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI-IEEL 173 (241)
T ss_pred HHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH-HHHH
Confidence 12234445553 23344445566 56667788888899999999999988888875443 4466
Q ss_pred HHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1132 le~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+..+.++.|.++|++||+.+.+..+++ +|.+++.|.++..+
T Consensus 174 l~~~~~~~g~tii~~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 214 (241)
T PRK14250 174 IVKLKNKMNLTVIWITHNMEQAKRIGD--YTAFLNKGILVEYA 214 (241)
T ss_pred HHHHHHhCCCEEEEEeccHHHHHHhCC--EEEEEeCCEEEEeC
Confidence 666655448899999999999988888 88899888776544
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-16 Score=175.27 Aligned_cols=153 Identities=18% Similarity=0.121 Sum_probs=108.9
Q ss_pred cccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC----------------cccccccc---ccchHHHH----
Q 000778 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----------------ADVPAEIF---EISPVDRI---- 1073 (1288)
Q Consensus 1017 ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G----------------~~vPa~~~---~l~~~d~i---- 1073 (1288)
++++|++ .+|++++|+||||+|||||||+|+|+... ..| .++|+... .+++.+.+
T Consensus 2 ~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~ 79 (230)
T TIGR01184 2 KGVNLTI-QQGEFISLIGHSGCGKSTLLNLISGLAQP-TSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAV 79 (230)
T ss_pred CceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHH
Confidence 5788888 78999999999999999999999986421 111 24444321 12223322
Q ss_pred -------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHH
Q 000778 1074 -------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLE 1133 (1288)
Q Consensus 1074 -------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile 1133 (1288)
+.++|..+.+....+.+| ++.++++.+.+++.+|+++|||||++|.|+.....+. .++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~-~~l~ 158 (230)
T TIGR01184 80 DRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ-EELM 158 (230)
T ss_pred HhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH-HHHH
Confidence 233333333333445566 5556778888889999999999999999988665544 5555
Q ss_pred HHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1134 HFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1134 ~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.+.++.++++|++||+++.+..+++ +|.+++.|.++..+
T Consensus 159 ~~~~~~~~tii~~sH~~~~~~~~~d--~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 159 QIWEEHRVTVLMVTHDVDEALLLSD--RVVMLTNGPAANIG 197 (230)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhcC--EEEEEeCCcEeccc
Confidence 6655457899999999999988888 89999988887654
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-16 Score=178.43 Aligned_cols=158 Identities=20% Similarity=0.148 Sum_probs=114.0
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccc----cccch
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEI----FEISP 1069 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~----~~l~~ 1069 (1288)
.++++++|++ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+.. ...++
T Consensus 18 ~~l~~vsl~i-~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (277)
T PRK13652 18 EALNNINFIA-PRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTV 96 (277)
T ss_pred ceeeEeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccH
Confidence 5889999999 78999999999999999999999985310 11123455432 11122
Q ss_pred HHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1070 VDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1070 ~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.+. ++.++|..+.+......++ ++.++++.+.+++.+|++||||||++|.|+.....
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~- 175 (277)
T PRK13652 97 EQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE- 175 (277)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH-
Confidence 222 2333344444444445566 45566778888899999999999988888875554
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+.++..+.++.++|+|++||+++++..+++ +|.+++.|.++..|+
T Consensus 176 l~~~l~~l~~~~g~tvli~tH~~~~~~~~~d--rv~~l~~G~i~~~g~ 221 (277)
T PRK13652 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMAD--YIYVMDKGRIVAYGT 221 (277)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCC--EEEEEECCeEEEECC
Confidence 3466767765558899999999999988888 899999998887653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-16 Score=176.92 Aligned_cols=171 Identities=15% Similarity=0.118 Sum_probs=118.2
Q ss_pred eEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------
Q 000778 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------- 1053 (1288)
Q Consensus 993 ~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------- 1053 (1288)
.|.+++....+ .+..++++++|++ .+|++++|+||||+|||||||+|+|+.-.
T Consensus 11 ~l~i~~l~~~~-------~~~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 11 TFALRNVSFRV-------PGRTLLHPLSLTF-PAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA 82 (265)
T ss_pred eEEEeeEEEEE-------CCEEEEeeeeeEE-cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHH
Confidence 45666554322 1246899999999 78999999999999999999999986410
Q ss_pred -hhcCcccccccc---ccchHHH-------------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHh
Q 000778 1054 -AQVGADVPAEIF---EISPVDR-------------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSS 1103 (1288)
Q Consensus 1054 -aq~G~~vPa~~~---~l~~~d~-------------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~ 1103 (1288)
.+...|+|+... .+.+.+. ++.+++..+.+......++ ++.++++.+.++
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 162 (265)
T PRK10575 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLV 162 (265)
T ss_pred HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 011234444311 1122222 2333444433333445566 556677888889
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1104 ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1104 a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+.+|+|+|||||++|.|+.....+ ..++..+.++.++++|++||+++++..+++ +|.+++.|.++..+
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~-~~~l~~l~~~~~~tiii~sH~~~~i~~~~d--~i~~l~~G~i~~~~ 230 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDV-LALVHRLSQERGLTVIAVLHDINMAARYCD--YLVALRGGEMIAQG 230 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCeEEEec
Confidence 999999999999888888755543 466666765458899999999999988888 88888888776544
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-16 Score=176.49 Aligned_cols=158 Identities=18% Similarity=0.150 Sum_probs=112.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc---ccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF---EISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~---~l~~ 1069 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. ...-.|+|+... ...+
T Consensus 20 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 98 (265)
T PRK10253 20 YTVAENLTVEI-PDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITV 98 (265)
T ss_pred EEEeeecceEE-CCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcH
Confidence 46899999999 78999999999999999999999986410 011124444321 1122
Q ss_pred HHH-------------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1070 VDR-------------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1070 ~d~-------------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+. ++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~ 178 (265)
T PRK10253 99 QELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH 178 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 222 2233344433344445566 55667788888899999999999988888886
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+. .+|..+.++.++++|++||+++.+..+++ ++..++.|.++..+
T Consensus 179 ~~~l~-~~L~~l~~~~~~tiii~tH~~~~~~~~~d--~i~~l~~G~i~~~g 226 (265)
T PRK10253 179 QIDLL-ELLSELNREKGYTLAAVLHDLNQACRYAS--HLIALREGKIVAQG 226 (265)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 66544 56666655457899999999999999898 88888888766543
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-16 Score=171.87 Aligned_cols=156 Identities=18% Similarity=0.163 Sum_probs=108.4
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCcccccccc---ccch
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEIF---EISP 1069 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~~---~l~~ 1069 (1288)
.+.++++|++ .+|++++|+|||||||||||++|+|+.-. .+.-.|+|+... .+++
T Consensus 14 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (222)
T cd03224 14 QILFGVSLTV-PEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV 92 (222)
T ss_pred eEeeeeeEEE-cCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence 5788999998 78999999999999999999999985411 111234444321 1122
Q ss_pred HHHH-------------------HHhc-CchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1070 VDRI-------------------FVRM-GAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1070 ~d~i-------------------~~~i-g~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
.+.+ +..+ +..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l- 171 (222)
T cd03224 93 EENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI- 171 (222)
T ss_pred HHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH-
Confidence 2222 1112 12222222334455 455667778888999999999999999888765544
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+.++..+.+ .++++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 172 ~~~l~~~~~-~~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 214 (222)
T cd03224 172 FEAIRELRD-EGVTILLVEQNARFALEIAD--RAYVLERGRVVLEG 214 (222)
T ss_pred HHHHHHHHH-CCCEEEEEeCCHHHHHHhcc--EEEEeeCCeEEEeC
Confidence 456666655 47899999999999988888 88888888776554
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.1e-16 Score=173.58 Aligned_cols=157 Identities=17% Similarity=0.241 Sum_probs=112.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------hhcCcccccccc---cc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------AQVGADVPAEIF---EI 1067 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------aq~G~~vPa~~~---~l 1067 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .+
T Consensus 14 ~~il~~~s~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (240)
T PRK09493 14 TQVLHNIDLNI-DQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL 92 (240)
T ss_pred eEEeeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCC
Confidence 35789999999 78999999999999999999999985410 011234444321 11
Q ss_pred chHHH----------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1068 SPVDR----------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1068 ~~~d~----------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.+.+. ++.++|..+.+....+.++ ++.++++.+.+++.+|+++|||||++|.|+...
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 172 (240)
T PRK09493 93 TALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELR 172 (240)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 22222 2333444444444455666 556667888888999999999999999988765
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..+. .++..+.++ +.++|++||+.+++..+++ ++.+++.|.++..+
T Consensus 173 ~~l~-~~l~~~~~~-~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~g 218 (240)
T PRK09493 173 HEVL-KVMQDLAEE-GMTMVIVTHEIGFAEKVAS--RLIFIDKGRIAEDG 218 (240)
T ss_pred HHHH-HHHHHHHHc-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEeeC
Confidence 5544 566667554 7899999999999988888 88889888877654
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-16 Score=176.50 Aligned_cols=158 Identities=14% Similarity=0.124 Sum_probs=111.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~ 1066 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+...|+|+... .
T Consensus 20 ~~il~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 98 (269)
T PRK11831 20 RCIFDNISLTV-PRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTD 98 (269)
T ss_pred EEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCC
Confidence 46889999999 78999999999999999999999986411 111234554421 1
Q ss_pred cchHHHH----------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1067 ISPVDRI----------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1067 l~~~d~i----------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.+.+.+ +.++|..+......+.++ ++.++++.+.+++.+|++||||||++|.|+..
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 178 (269)
T PRK11831 99 MNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178 (269)
T ss_pred CCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 2223322 222333333333345566 45556777778899999999999988888875
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+ ..++..+.++.|+++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 179 ~~~l-~~~l~~~~~~~g~tiiivsH~~~~~~~~~d--~v~~l~~G~i~~~g 226 (269)
T PRK11831 179 MGVL-VKLISELNSALGVTCVVVSHDVPEVLSIAD--HAYIVADKKIVAHG 226 (269)
T ss_pred HHHH-HHHHHHHHHhcCcEEEEEecCHHHHHHhhC--EEEEEECCEEEEeC
Confidence 5544 456666655447899999999999988888 88888888776554
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-16 Score=171.27 Aligned_cols=151 Identities=15% Similarity=0.090 Sum_probs=106.3
Q ss_pred ccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchHHH----
Q 000778 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVDR---- 1072 (1288)
Q Consensus 1018 di~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~d~---- 1072 (1288)
+++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .+++.+.
T Consensus 16 ~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 94 (211)
T cd03298 16 HFDLTF-AQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLG 94 (211)
T ss_pred ceEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcc
Confidence 888988 78999999999999999999999986421 001124444321 1122222
Q ss_pred -----------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 000778 1073 -----------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1073 -----------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~ 1134 (1288)
++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+. .++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~ 173 (211)
T cd03298 95 LSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML-DLVLD 173 (211)
T ss_pred cccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 2333343333333345566 4556677778889999999999998888888666544 56666
Q ss_pred HHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1135 FVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1135 l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
+.++.++++|++||+++.+..+++ ++.+++.|.++.
T Consensus 174 ~~~~~~~tii~~sH~~~~~~~~~d--~i~~l~~G~i~~ 209 (211)
T cd03298 174 LHAETKMTVLMVTHQPEDAKRLAQ--RVVFLDNGRIAA 209 (211)
T ss_pred HHHhcCCEEEEEecCHHHHHhhhC--EEEEEECCEEee
Confidence 655458899999999999988888 888888887654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-16 Score=177.12 Aligned_cols=157 Identities=18% Similarity=0.109 Sum_probs=110.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC----------------cccccccc---ccchHH--
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----------------ADVPAEIF---EISPVD-- 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G----------------~~vPa~~~---~l~~~d-- 1071 (1288)
..+.+|++|.+ .+|++++|+||||||||||||+|+|+... ..| .|+|+... ..++.+
T Consensus 14 ~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l 91 (255)
T PRK11248 14 KPALEDINLTL-ESGELLVVLGPSGCGKTTLLNLIAGFVPY-QHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNV 91 (255)
T ss_pred eeeEeeeeEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHH
Confidence 36789999999 78999999999999999999999986421 111 24444321 112222
Q ss_pred -------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHH
Q 000778 1072 -------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1072 -------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ai 1131 (1288)
.++.++|..+.+......++ ++.++++.+.+++.+|++||||||++|.|+.....+ ..+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~ 170 (255)
T PRK11248 92 AFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM-QTL 170 (255)
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHH
Confidence 22334444443344455666 455667888888999999999999888888765544 456
Q ss_pred HHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee--eEEEEecC
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH--MACQVGNG 1174 (1288)
Q Consensus 1132 le~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~--~~~~~~~g 1174 (1288)
|..+.++.|+++|++||+.+.+..+++ ++.+++ .|.++..+
T Consensus 171 L~~~~~~~g~tviivsH~~~~~~~~~d--~i~~l~~~~G~i~~~~ 213 (255)
T PRK11248 171 LLKLWQETGKQVLLITHDIEEAVFMAT--ELVLLSPGPGRVVERL 213 (255)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEeCCCcEEEEEe
Confidence 666644448899999999999988888 788887 47666543
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-16 Score=171.05 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=105.2
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---cc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---EI 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~l 1067 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .+
T Consensus 15 ~~l~~~sl~i-~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (214)
T cd03292 15 AALDGINISI-SAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR 93 (214)
T ss_pred eeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC
Confidence 5788999998 78999999999999999999999985310 111234554321 11
Q ss_pred chHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1068 SPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1068 ~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
++.+. ++.++|..+.+.....+++ ++.++++.+.+++.+|+++|||||++|.|+....
T Consensus 94 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 173 (214)
T cd03292 94 NVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW 173 (214)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 22222 2333344433333445566 4556678888889999999999998888887655
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
.+ ..++..+.++ ++++|++||+.+.+..+++ ++.+++.|
T Consensus 174 ~~-~~~l~~~~~~-~~tiiivtH~~~~~~~~~d--~i~~l~~G 212 (214)
T cd03292 174 EI-MNLLKKINKA-GTTVVVATHAKELVDTTRH--RVIALERG 212 (214)
T ss_pred HH-HHHHHHHHHc-CCEEEEEeCCHHHHHHhCC--EEEEEeCC
Confidence 44 4566666554 7899999999999988887 77666554
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-16 Score=171.28 Aligned_cols=155 Identities=15% Similarity=0.082 Sum_probs=106.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-HhhcCcccccc-------ccccch---HHHHHHhcCchh
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-LAQVGADVPAE-------IFEISP---VDRIFVRMGAKD 1081 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-laq~G~~vPa~-------~~~l~~---~d~i~~~ig~~d 1081 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+.. .+..|...-.. ...+++ ...++..+...+
T Consensus 20 ~~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 98 (192)
T cd03232 20 RQLLNNISGYV-KPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVRE 98 (192)
T ss_pred eEeEEccEEEE-eCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHH
Confidence 45789999998 7899999999999999999999998642 12333211000 001111 112333344455
Q ss_pred hHhhcc--cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchh-hhhhc
Q 000778 1082 HIMAGQ--STFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRL-AVDYK 1157 (1288)
Q Consensus 1082 ~i~~~~--Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l-~~~~~ 1157 (1288)
++.... ..++ +|.++++.+.+++.+|+++|||||++|.|+.....+ +.++..+.+. ++++|++||+++. +...+
T Consensus 99 ~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l-~~~l~~~~~~-~~tiiivtH~~~~~~~~~~ 176 (192)
T cd03232 99 ALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNI-VRFLKKLADS-GQAILCTIHQPSASIFEKF 176 (192)
T ss_pred HHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHH-HHHHHHHHHc-CCEEEEEEcCChHHHHhhC
Confidence 554321 1565 566677888888999999999999999988765544 4667777554 8899999999984 56667
Q ss_pred CCCceEEeee-EEEEe
Q 000778 1158 KDPRVSLCHM-ACQVG 1172 (1288)
Q Consensus 1158 ~~~~v~~~~~-~~~~~ 1172 (1288)
+ ++..++. |.++.
T Consensus 177 d--~i~~l~~~g~i~~ 190 (192)
T cd03232 177 D--RLLLLKRGGKTVY 190 (192)
T ss_pred C--EEEEEcCCCeEEe
Confidence 7 7877776 66654
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-16 Score=165.14 Aligned_cols=145 Identities=17% Similarity=0.136 Sum_probs=100.8
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcccccc-c-cccchHHHHHHhcCchhhHhhcccchH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE-I-FEISPVDRIFVRMGAKDHIMAGQSTFL 1091 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~-~-~~l~~~d~i~~~ig~~d~i~~~~Stf~ 1091 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.. ...|...-.. . ......+..-..++. ...++
T Consensus 14 ~vl~~i~~~i-~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~~i~~-------~~qLS 84 (163)
T cd03216 14 KALDGVSLSV-RRGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKEVSFASPRDARRAGIAM-------VYQLS 84 (163)
T ss_pred EEEeeeEEEE-eCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECCcCCHHHHHhcCeEE-------EEecC
Confidence 5788999999 7899999999999999999999998643 2233221110 0 011111111111211 11155
Q ss_pred -HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEE
Q 000778 1092 -TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQ 1170 (1288)
Q Consensus 1092 -~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~ 1170 (1288)
++.++++.+.+++.+|+++|||||++|.|+.....+ ..++..+.++ +.++|++||+++.+..+++ ++..++.|.+
T Consensus 85 ~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l-~~~l~~~~~~-~~tiii~sh~~~~~~~~~d--~~~~l~~g~i 160 (163)
T cd03216 85 VGERQMVEIARALARNARLLILDEPTAALTPAEVERL-FKVIRRLRAQ-GVAVIFISHRLDEVFEIAD--RVTVLRDGRV 160 (163)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH-HHHHHHHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEE
Confidence 566678888889999999999999888888765544 4566666554 7899999999998888887 7877777765
Q ss_pred E
Q 000778 1171 V 1171 (1288)
Q Consensus 1171 ~ 1171 (1288)
+
T Consensus 161 ~ 161 (163)
T cd03216 161 V 161 (163)
T ss_pred E
Confidence 4
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.8e-16 Score=173.41 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=110.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------h-------hcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------A-------QVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------a-------q~G~~vPa~~~---~l~~~ 1070 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. . +...|+|+... ...+.
T Consensus 14 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~ 92 (236)
T TIGR03864 14 RRALDDVSFTV-RPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVR 92 (236)
T ss_pred EEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHH
Confidence 46889999999 78999999999999999999999986411 0 11234454321 12222
Q ss_pred HH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 DR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+. ++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+.
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~ 172 (236)
T TIGR03864 93 QNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIV 172 (236)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH
Confidence 22 2233344333334445566 5566778888899999999999999999988666554
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.++..+.++.++++|++||+++.+.. ++ ++.+++.|.++..+
T Consensus 173 -~~l~~~~~~~~~tiii~sH~~~~~~~-~d--~i~~l~~G~i~~~~ 214 (236)
T TIGR03864 173 -AHVRALCRDQGLSVLWATHLVDEIEA-DD--RLVVLHRGRVLADG 214 (236)
T ss_pred -HHHHHHHHhCCCEEEEEecChhhHhh-CC--EEEEEeCCeEEEeC
Confidence 56666654447899999999999864 66 88888888766543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-16 Score=169.22 Aligned_cols=160 Identities=19% Similarity=0.176 Sum_probs=108.7
Q ss_pred CCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH----------------------HHhhcCccc--------
Q 000778 1011 KGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV----------------------ILAQVGADV-------- 1060 (1288)
Q Consensus 1011 ~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~----------------------ilaq~G~~v-------- 1060 (1288)
+++.|+.||+..+ ++|+.++|+|||||||||||+++++-. +-..+|..-
T Consensus 42 ~gk~iL~~isW~V-~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~ 120 (257)
T COG1119 42 NGKKILGDLSWQV-NPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFR 120 (257)
T ss_pred CCEeeccccceee-cCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcc
Confidence 4689999999999 889999999999999999999999722 112222110
Q ss_pred ccc----------ccccch------------HHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1061 PAE----------IFEISP------------VDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1061 Pa~----------~~~l~~------------~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
+.. .+.+++ ...++..+|+..-..+...++| +|.+++-.+.+++.+|.|||||||+.
T Consensus 121 ~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~ 200 (257)
T COG1119 121 VRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQ 200 (257)
T ss_pred cccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccc
Confidence 100 011111 1234455666655555666666 45555556667899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhc-cCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHK-VQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~-~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|.|..-...+ ...+..++.. .+.++|||||+.+.+....+ ++..+..|.++..|
T Consensus 201 GLDl~~re~l-l~~l~~~~~~~~~~~ll~VtHh~eEi~~~~t--h~lll~~g~v~~~g 255 (257)
T COG1119 201 GLDLIAREQL-LNRLEELAASPGAPALLFVTHHAEEIPPCFT--HRLLLKEGEVVAQG 255 (257)
T ss_pred cCChHHHHHH-HHHHHHHhcCCCCceEEEEEcchhhcccccc--eEEEeeCCceeecc
Confidence 8888754433 3455555432 35689999999998877666 67777777666543
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-16 Score=170.34 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=110.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~ 1066 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+... .
T Consensus 15 ~~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 15 RQALQGVTFHM-RPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred CeEEeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 36789999999 78999999999999999999999985410 111234554321 1
Q ss_pred cchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1067 ISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1067 l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
..+.+. ++.+++..+.+....+.++ ++.++++.+.+++.+|+|+|||||++|.|+...
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 173 (222)
T PRK10908 94 RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALS 173 (222)
T ss_pred ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 122222 2333444443444445666 455667788888999999999999888888755
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
..+. .++..+.++ +.++|++||+++++..+++ ++..++.|.++.
T Consensus 174 ~~l~-~~l~~~~~~-~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~ 217 (222)
T PRK10908 174 EGIL-RLFEEFNRV-GVTVLMATHDIGLISRRSY--RMLTLSDGHLHG 217 (222)
T ss_pred HHHH-HHHHHHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEcc
Confidence 5444 566666554 7899999999999998888 888888887654
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-16 Score=184.60 Aligned_cols=173 Identities=17% Similarity=0.151 Sum_probs=121.2
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh-----------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----------------- 1054 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----------------- 1054 (1288)
+.|.+++.+..+- +..++++++|++ .+|++++|+||||||||||||+|+|+.-..
T Consensus 18 ~~l~l~~v~~~~~-------~~~~l~~vsl~i-~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 18 PLLEIRNLTKSFD-------GQHAVDDVSLTI-YKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY 89 (377)
T ss_pred ceEEEEeEEEEEC-------CEEEEeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH
Confidence 3466666554331 236889999999 789999999999999999999999964210
Q ss_pred -hcCcccccccc---ccchHHHH---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCc
Q 000778 1055 -QVGADVPAEIF---EISPVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNS 1108 (1288)
Q Consensus 1055 -q~G~~vPa~~~---~l~~~d~i---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~s 1108 (1288)
+.-.+|++..+ .+++.+.+ +..++..+........++ ++.++++.+.+++.+|+
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~ 169 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPK 169 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 01124444322 22333333 222333332233334455 56677888889999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1109 LVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1109 LvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|||||||++|.|..-...+. ..+..+.++.+.|+|++||+.+.+..+++ ++.+++.|.++..|+
T Consensus 170 lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~tii~vTHd~~ea~~laD--ri~vl~~G~i~~~g~ 233 (377)
T PRK11607 170 LLLLDEPMGALDKKLRDRMQ-LEVVDILERVGVTCVMVTHDQEEAMTMAG--RIAIMNRGKFVQIGE 233 (377)
T ss_pred EEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhCC--EEEEEeCCEEEEEcC
Confidence 99999998888887665554 44445555568999999999999999998 999999999887764
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-16 Score=174.36 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=111.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------------------hhcCcc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------------------AQVGAD 1059 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------------------aq~G~~ 1059 (1288)
..+++|++|++ .+|++++|+||||+|||||||+|+|+... .+.-.+
T Consensus 13 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (252)
T TIGR03005 13 LTVLDGLNFSV-AAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGM 91 (252)
T ss_pred eeEEeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEE
Confidence 35789999999 78999999999999999999999985411 111224
Q ss_pred cccccc---ccchHHH----------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEe
Q 000778 1060 VPAEIF---EISPVDR----------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLD 1113 (1288)
Q Consensus 1060 vPa~~~---~l~~~d~----------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLD 1113 (1288)
+|+... ..++.+. ++..+|..+.+......++ ++.++++.+.+++.+|+++|||
T Consensus 92 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 171 (252)
T TIGR03005 92 VFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFD 171 (252)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 443321 1122222 2233344333333445565 5666788888889999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1114 ELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1114 Epg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
||++|.|+.....+ ..++..+.++.+.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 172 EP~~~LD~~~~~~l-~~~l~~~~~~~~~tiiivsH~~~~~~~~~d--~i~~l~~G~i~~~g 229 (252)
T TIGR03005 172 EVTSALDPELVGEV-LNVIRRLASEHDLTMLLVTHEMGFAREFAD--RVCFFDKGRIVEQG 229 (252)
T ss_pred CCcccCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCCHHHHHHhcC--EEEEEECCEEEEeC
Confidence 99888888755544 456666655458899999999999888888 88888888877654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-16 Score=169.57 Aligned_cols=152 Identities=15% Similarity=0.135 Sum_probs=107.2
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchHH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~d 1071 (1288)
.+.++++|++ .+| +++|+||||+||||||++|+|+... .+.-.|+|+... .+.+.+
T Consensus 14 ~~l~~vs~~i-~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (211)
T cd03264 14 RALDGVSLTL-GPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVRE 91 (211)
T ss_pred EEEcceeEEE-cCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHH
Confidence 5788999999 668 9999999999999999999985410 111234554421 122222
Q ss_pred H---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1072 R---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1072 ~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
. ++..+|..+........++ ++.++++.+.+++.+|+++|||||++|.|+.....+ .
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~ 170 (211)
T cd03264 92 FLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF-R 170 (211)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 2 2223343333333344555 566678888889999999999999888888755544 4
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
.++.++.+ +.++|++||+++++..+++ ++.+++.|.++.
T Consensus 171 ~~l~~~~~--~~tii~vsH~~~~~~~~~d--~i~~l~~g~i~~ 209 (211)
T cd03264 171 NLLSELGE--DRIVILSTHIVEDVESLCN--QVAVLNKGKLVF 209 (211)
T ss_pred HHHHHHhC--CCEEEEEcCCHHHHHHhCC--EEEEEECCEEEe
Confidence 66777754 4899999999999988888 888888887654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-16 Score=173.18 Aligned_cols=156 Identities=13% Similarity=0.098 Sum_probs=108.7
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh---hcC-------------------cccccccc-----cc
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA---QVG-------------------ADVPAEIF-----EI 1067 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila---q~G-------------------~~vPa~~~-----~l 1067 (1288)
+.+|++|.+ .+|++++|+||||+|||||||+|+|+.-.. ..| .|+|+... .+
T Consensus 1 ~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSL-KRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 357899998 789999999999999999999999975320 111 23443321 01
Q ss_pred chHHH---------------------HHHhcCch---hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1068 SPVDR---------------------IFVRMGAK---DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1068 ~~~d~---------------------i~~~ig~~---d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
.+.+. ++.+++.. +.+......++ ++.++++.+++++.+|+++|||||++|.|+.
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 11111 12222332 12233345555 5666788888889999999999998888887
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
....+ ..++..+.++.++++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 160 ~~~~l-~~~l~~~~~~~~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 208 (230)
T TIGR02770 160 NQARV-LKLLRELRQLFGTGILLITHDLGVVARIAD--EVAVMDDGRIVERG 208 (230)
T ss_pred HHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 55544 456666655447899999999999888888 88888888877654
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-16 Score=170.67 Aligned_cols=155 Identities=19% Similarity=0.150 Sum_probs=110.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH-----HHhhcC-----------------------ccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-----ILAQVG-----------------------ADVPAEI 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~-----ilaq~G-----------------------~~vPa~~ 1064 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+. .. ..| .|+|+..
T Consensus 13 ~~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 13 KHALKDISLDI-PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP-DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred ceeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC-CCeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 36789999999 789999999999999999999999976 21 111 2444432
Q ss_pred c--ccchHHH----------------------HHHhcCchhhHhhc--ccchHH-HHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1065 F--EISPVDR----------------------IFVRMGAKDHIMAG--QSTFLT-ELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1065 ~--~l~~~d~----------------------i~~~ig~~d~i~~~--~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
. .+++.+. ++..+|..+.+... ...+++ +.++++.+.+++.+|+++|||||++
T Consensus 91 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 170 (227)
T cd03260 91 NPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTS 170 (227)
T ss_pred hhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 1 1122222 22333443333333 256764 5556777778899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|.|+.....+ +.++..+.++ .++|++||+++.+..+++ ++.+++.|.++..|
T Consensus 171 ~LD~~~~~~l-~~~l~~~~~~--~tii~~sH~~~~~~~~~d--~i~~l~~G~i~~~g 222 (227)
T cd03260 171 ALDPISTAKI-EELIAELKKE--YTIVIVTHNMQQAARVAD--RTAFLLNGRLVEFG 222 (227)
T ss_pred cCCHHHHHHH-HHHHHHHhhC--cEEEEEeccHHHHHHhCC--EEEEEeCCEEEEec
Confidence 8888755544 4666666543 799999999999988888 88899888877655
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-16 Score=166.71 Aligned_cols=144 Identities=18% Similarity=0.205 Sum_probs=101.8
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccc----ccc------ccccchH---HHHHHhcCch
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV----PAE------IFEISPV---DRIFVRMGAK 1080 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~v----Pa~------~~~l~~~---d~i~~~ig~~ 1080 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.- ...|... +.. ...++++ ..+|..+...
T Consensus 14 ~~l~~~~~~i-~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (173)
T cd03230 14 TALDDISLTV-EKGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVR 91 (173)
T ss_pred eeeeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHH
Confidence 5788999998 7899999999999999999999998642 2223111 000 0011111 1123333444
Q ss_pred hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCC
Q 000778 1081 DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKD 1159 (1288)
Q Consensus 1081 d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~ 1159 (1288)
+++. ++ ++.++++.+.+++.+|+++|||||++|.|+.....+. .+++.+.++ |.++|++||+.+++..+++
T Consensus 92 ~~~~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~-g~tiii~th~~~~~~~~~d- 163 (173)
T cd03230 92 ENLK-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW-ELLRELKKE-GKTILLSSHILEEAERLCD- 163 (173)
T ss_pred HHhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHC-CCEEEEECCCHHHHHHhCC-
Confidence 5543 44 5667788888899999999999998888887655544 666677665 7899999999999888887
Q ss_pred CceEEeeeE
Q 000778 1160 PRVSLCHMA 1168 (1288)
Q Consensus 1160 ~~v~~~~~~ 1168 (1288)
++..++.|
T Consensus 164 -~i~~l~~g 171 (173)
T cd03230 164 -RVAILNNG 171 (173)
T ss_pred -EEEEEeCC
Confidence 77776654
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-16 Score=173.54 Aligned_cols=156 Identities=16% Similarity=0.112 Sum_probs=107.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc---
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF--- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~--- 1065 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+...
T Consensus 22 ~~il~~isl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (233)
T PRK11629 22 TDVLHNVSFSI-GEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLP 100 (233)
T ss_pred eeeEEeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCC
Confidence 36899999999 78999999999999999999999986410 011234454421
Q ss_pred ccchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1066 EISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1066 ~l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+++.+. ++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 101 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 180 (233)
T PRK11629 101 DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180 (233)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 1122222 2233344333333344555 45566778888899999999999999998875
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
... ...++..+.++.|.++|++||+++.+..+ + ++.+++.|.++..
T Consensus 181 ~~~-l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~--~~~~l~~G~i~~~ 226 (233)
T PRK11629 181 ADS-IFQLLGELNRLQGTAFLVVTHDLQLAKRM-S--RQLEMRDGRLTAE 226 (233)
T ss_pred HHH-HHHHHHHHHHhCCCEEEEEeCCHHHHHhh-C--EEEEEECCEEEEE
Confidence 554 44667777554478999999999998764 4 6677777766543
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.7e-16 Score=170.08 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=109.6
Q ss_pred ccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchHHH--
Q 000778 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVDR-- 1072 (1288)
Q Consensus 1016 ~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~d~-- 1072 (1288)
..+++|.+ .+|++++|+||||+|||||||+|+|+.-. .+...|+|+... .+++.+.
T Consensus 14 ~~~~s~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~ 92 (213)
T TIGR01277 14 PMEFDLNV-ADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIG 92 (213)
T ss_pred ceeeEEEE-eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHH
Confidence 45788988 78999999999999999999999986411 111234554421 1222232
Q ss_pred -------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 000778 1073 -------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVL 1132 (1288)
Q Consensus 1073 -------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ail 1132 (1288)
++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ ..++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~-~~~l 171 (213)
T TIGR01277 93 LGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEM-LALV 171 (213)
T ss_pred hHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH-HHHH
Confidence 2333344333333345565 556677788888999999999999888888765544 4566
Q ss_pred HHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1133 EHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1133 e~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..+.++.++++|++||+.+++..+++ ++.+++.|.++..|
T Consensus 172 ~~~~~~~~~tii~vsh~~~~~~~~~d--~v~~l~~g~i~~~~ 211 (213)
T TIGR01277 172 KQLCSERQRTLLMVTHHLSDARAIAS--QIAVVSQGKIKVVS 211 (213)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHhhcC--eEEEEECCeEEEec
Confidence 66655457899999999999888888 88888888877654
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-16 Score=171.32 Aligned_cols=156 Identities=16% Similarity=0.190 Sum_probs=112.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC-----------------cccccccc---ccchHHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG-----------------ADVPAEIF---EISPVDR 1072 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G-----------------~~vPa~~~---~l~~~d~ 1072 (1288)
..+.++++|.+ .+|++++|+||||+||||||++|+|+.. .+.| .|+|+... .+++.+.
T Consensus 13 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~ 90 (223)
T TIGR03740 13 QTAVNNISLTV-PKNSVYGLLGPNGAGKSTLLKMITGILR-PTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTAREN 90 (223)
T ss_pred EEEEeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEeccccccccEEEEcCCCCccccCCHHHH
Confidence 35788999998 7899999999999999999999998642 1112 23443321 1222222
Q ss_pred -----------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 000778 1073 -----------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1073 -----------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~ 1134 (1288)
++.++|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +.++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l-~~~L~~ 169 (223)
T TIGR03740 91 LKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQEL-RELIRS 169 (223)
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHH-HHHHHH
Confidence 2334444444444445566 566677888888999999999999888888865554 466666
Q ss_pred HHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1135 FVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1135 l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+.+. +.++|++||+.+++..+++ ++..++.|.++..+
T Consensus 170 ~~~~-~~tiii~sH~~~~~~~~~d--~i~~l~~g~i~~~~ 206 (223)
T TIGR03740 170 FPEQ-GITVILSSHILSEVQQLAD--HIGIISEGVLGYQG 206 (223)
T ss_pred HHHC-CCEEEEEcCCHHHHHHhcC--EEEEEeCCEEEEec
Confidence 6554 7899999999999988888 88888888877654
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.3e-16 Score=172.95 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=110.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCcccccccc---ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEIF---EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~~---~l~ 1068 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+... .++
T Consensus 16 ~~~l~~~sl~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 94 (241)
T PRK10895 16 RRVVEDVSLTV-NSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLS 94 (241)
T ss_pred EEEEeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCc
Confidence 46889999999 78999999999999999999999996411 011234444321 122
Q ss_pred hHHHH----------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1069 PVDRI----------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1069 ~~d~i----------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
+.+.+ +..+|..+........++ ++.++++.+.+++.+|+++|||||++|.|+....
T Consensus 95 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 174 (241)
T PRK10895 95 VYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVI 174 (241)
T ss_pred HHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 22322 223333333333344555 4556678888889999999999998888887555
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.+ +.++..+.+ .|.++|++||+++.+..+++ ++..++.|.++..+
T Consensus 175 ~l-~~~l~~~~~-~g~tiii~sH~~~~~~~~~d--~v~~l~~G~i~~~~ 219 (241)
T PRK10895 175 DI-KRIIEHLRD-SGLGVLITDHNVRETLAVCE--RAYIVSQGHLIAHG 219 (241)
T ss_pred HH-HHHHHHHHh-cCCEEEEEEcCHHHHHHhcC--EEEEEeCCeEEeeC
Confidence 44 466777755 38899999999998888888 88888888776554
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-16 Score=177.43 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=113.7
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc----
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF---- 1065 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~---- 1065 (1288)
.+++|++|++ .+|++++|+||||||||||||+|+|+.-. .+.-.|||+...
T Consensus 21 ~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (286)
T PRK13646 21 QAIHDVNTEF-EQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF 99 (286)
T ss_pred CceeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccc
Confidence 5899999999 78999999999999999999999985311 111135555320
Q ss_pred ccchHH---------------------HHHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1066 EISPVD---------------------RIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1066 ~l~~~d---------------------~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
...+.+ .++..+|.. +.......+++ +++++++.+.+++.+|++||||||++|.|+.
T Consensus 100 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~ 179 (286)
T PRK13646 100 EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQ 179 (286)
T ss_pred hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 011222 223334443 23334455666 5566777888889999999999998888888
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
....+ ..++..+.++.|+|+|++||+++++..+++ +|.+++.|.++..|
T Consensus 180 ~~~~l-~~~l~~l~~~~g~tvl~vtH~~~~~~~~~d--ri~~l~~G~i~~~g 228 (286)
T PRK13646 180 SKRQV-MRLLKSLQTDENKTIILVSHDMNEVARYAD--EVIVMKEGSIVSQT 228 (286)
T ss_pred HHHHH-HHHHHHHHHhCCCEEEEEecCHHHHHHhCC--EEEEEECCEEEEEC
Confidence 65544 467777765558999999999999988888 89999999887665
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-16 Score=175.73 Aligned_cols=159 Identities=18% Similarity=0.114 Sum_probs=112.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-----------------------HhhcCccccccc-----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------------LAQVGADVPAEI----- 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-----------------------laq~G~~vPa~~----- 1064 (1288)
..+.+|++|++ .+|++++|+||||+|||||||+|+|+.. ..+.-.|+|+..
T Consensus 24 ~~il~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 24 APVLTNVSLSI-EEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN 102 (265)
T ss_pred eEEeeCceeEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence 47899999999 7899999999999999999999998631 011223555542
Q ss_pred cccchHHH----------------------HHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1065 FEISPVDR----------------------IFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1065 ~~l~~~d~----------------------i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
....+.+. ++..+|.. .........++ ++.++++.+.+++.+|++||||||++|.|
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD 182 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD 182 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 11222222 22233332 22223334455 55667788888899999999999988888
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+..... ...++..+.+..+.++|++||+++.+..+++ ++.+++.|.++..|.
T Consensus 183 ~~~~~~-l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d--~i~~l~~G~i~~~g~ 234 (265)
T TIGR02769 183 MVLQAV-ILELLRKLQQAFGTAYLFITHDLRLVQSFCQ--RVAVMDKGQIVEECD 234 (265)
T ss_pred HHHHHH-HHHHHHHHHHhcCcEEEEEeCCHHHHHHHhc--EEEEEeCCEEEEECC
Confidence 875444 3466666655457899999999999988888 888888888776653
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-16 Score=173.19 Aligned_cols=157 Identities=14% Similarity=0.151 Sum_probs=110.9
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc---ccchH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
.++++++|.+ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .+++.
T Consensus 15 ~~l~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (242)
T cd03295 15 KAVNNLNLEI-AKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVE 93 (242)
T ss_pred eEeeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHH
Confidence 5788999999 78999999999999999999999985311 011134454321 12222
Q ss_pred HH---------------------HHHhcCchh--hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 000778 1071 DR---------------------IFVRMGAKD--HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1288)
Q Consensus 1071 d~---------------------i~~~ig~~d--~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~a 1126 (1288)
+. ++..+|... ........++ ++.++++.+.+++.+|+|+|||||++|.|+.....
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 173 (242)
T cd03295 94 ENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQ 173 (242)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 22 233344432 2333445566 45566788888899999999999988888875444
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1127 IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1127 ia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...++..+.++.++++|++||+.+.+..+++ +|.+++.|.++..+
T Consensus 174 -l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 218 (242)
T cd03295 174 -LQEEFKRLQQELGKTIVFVTHDIDEAFRLAD--RIAIMKNGEIVQVG 218 (242)
T ss_pred -HHHHHHHHHHHcCCEEEEEecCHHHHHHhCC--EEEEEECCEEEEec
Confidence 4466666655447899999999999888888 88888888876544
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6e-16 Score=176.92 Aligned_cols=156 Identities=15% Similarity=0.100 Sum_probs=113.6
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccc----cccch
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEI----FEISP 1069 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~----~~l~~ 1069 (1288)
.+++|++|++ .+|++++|+||||||||||||+|+|+... .+...|+++.. ....+
T Consensus 21 ~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (279)
T PRK13650 21 YTLNDVSFHV-KQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATV 99 (279)
T ss_pred eeeeeeEEEE-eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccH
Confidence 5889999999 78999999999999999999999986411 11123454432 11122
Q ss_pred HHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1070 VDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1070 ~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.+. ++..+|..+.......+++ +++++++.+.+++.+|+|||||||++|.|+.....
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~- 178 (279)
T PRK13650 100 EDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLE- 178 (279)
T ss_pred HHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH-
Confidence 222 2334444444444556676 56677888888999999999999999998875554
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...++..+.++.|+|+|++||+++.+. .++ ++.+++.|.++..|
T Consensus 179 l~~~l~~l~~~~g~tilivtH~~~~~~-~~d--ri~~l~~G~i~~~g 222 (279)
T PRK13650 179 LIKTIKGIRDDYQMTVISITHDLDEVA-LSD--RVLVMKNGQVESTS 222 (279)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHH-hCC--EEEEEECCEEEEEC
Confidence 446777776555899999999999884 577 89999999887655
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.4e-16 Score=176.01 Aligned_cols=158 Identities=16% Similarity=0.097 Sum_probs=111.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------hhcCcccccccc----c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------AQVGADVPAEIF----E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------aq~G~~vPa~~~----~ 1066 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+... .+...|+|+... .
T Consensus 14 ~~il~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (271)
T PRK13638 14 EPVLKGLNLDF-SLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFY 92 (271)
T ss_pred cccccceEEEE-cCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccc
Confidence 46889999999 78999999999999999999999985410 111235554421 0
Q ss_pred cchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1067 ISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1067 l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
..+.+. ++..+|..+......+.++ ++.++++.+.+++.+|++||||||++|.|+...
T Consensus 93 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~ 172 (271)
T PRK13638 93 TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172 (271)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 111111 1222233332333345566 455667788888999999999999888888755
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+ ..++..+.++ +.++|++||+++.+..+++ ++.+++.|.++..|.
T Consensus 173 ~~l-~~~l~~~~~~-g~tii~vtH~~~~~~~~~d--~i~~l~~G~i~~~g~ 219 (271)
T PRK13638 173 TQM-IAIIRRIVAQ-GNHVIISSHDIDLIYEISD--AVYVLRQGQILTHGA 219 (271)
T ss_pred HHH-HHHHHHHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEeCC
Confidence 544 4666667554 7899999999999988888 888888888876653
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.2e-16 Score=170.38 Aligned_cols=155 Identities=18% Similarity=0.142 Sum_probs=107.9
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc-----
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF----- 1065 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~----- 1065 (1288)
.+.++++|.+ .+|++++|+||||+||||||++|+|+... ...-.|+|+...
T Consensus 19 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (228)
T cd03257 19 KALDDVSFSI-KKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP 97 (228)
T ss_pred eeecCceeEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence 5789999999 78999999999999999999999985410 011224444320
Q ss_pred ccchHHHH-----------------------HHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1066 EISPVDRI-----------------------FVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1066 ~l~~~d~i-----------------------~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
.+++.+.+ +..++.. ..+......++ ++.++++.+.+++.+|+++|||||++|.|
T Consensus 98 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 177 (228)
T cd03257 98 RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177 (228)
T ss_pred cCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 12222222 1222321 12223334455 56667788888899999999999999988
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
+.....+ ..++..+.++.+.++|++||+.+.+..+++ ++.+++.|.++.
T Consensus 178 ~~~~~~l-~~~l~~~~~~~~~tii~~sH~~~~~~~~~d--~i~~l~~G~i~~ 226 (228)
T cd03257 178 VSVQAQI-LDLLKKLQEELGLTLLFITHDLGVVAKIAD--RVAVMYAGKIVE 226 (228)
T ss_pred HHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhcC--eEEEEeCCEEEe
Confidence 8755544 456666655447899999999999988888 888888887654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.3e-16 Score=172.51 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=109.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH-HHh---------------------hcC-ccccccccc---
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-ILA---------------------QVG-ADVPAEIFE--- 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~-ila---------------------q~G-~~vPa~~~~--- 1066 (1288)
..++++++|.+ .+|++++|+||||||||||||+|+|+. +.. ..+ .|+|+....
T Consensus 13 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (243)
T TIGR01978 13 KEILKGVNLTV-KKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPG 91 (243)
T ss_pred EEEEeccceEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCC
Confidence 35788999999 789999999999999999999999972 111 111 244443211
Q ss_pred cchH----------------------------HHHHHhcCchhh-Hhhccc-chH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1067 ISPV----------------------------DRIFVRMGAKDH-IMAGQS-TFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1067 l~~~----------------------------d~i~~~ig~~d~-i~~~~S-tf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
+.+. ..++.++|..+. ...... .++ ++.++++.+.+++.+|+++|||||
T Consensus 92 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 171 (243)
T TIGR01978 92 VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEI 171 (243)
T ss_pred cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 1111 112223333321 222233 366 556677888888999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhh-cCCCceEEeeeEEEEecCC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDY-KKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~-~~~~~v~~~~~~~~~~~g~ 1175 (1288)
++|.|+.....+. .++..+.+ .+.++|++||+.+++..+ ++ ++.+++.|.++..+.
T Consensus 172 t~~LD~~~~~~l~-~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d--~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 172 DSGLDIDALKIVA-EGINRLRE-PDRSFLIITHYQRLLNYIKPD--YVHVLLDGRIVKSGD 228 (243)
T ss_pred cccCCHHHHHHHH-HHHHHHHH-CCcEEEEEEecHHHHHhhcCC--eEEEEeCCEEEEecC
Confidence 8888887655444 66666654 378999999999999887 67 888898888876653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.3e-16 Score=177.70 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=114.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCccccccc----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEI---- 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~---- 1064 (1288)
..+++|++|++ .+|++++|+||||+|||||||+|+|+... .+...|||+..
T Consensus 20 ~~~L~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (290)
T PRK13634 20 RRALYDVNVSI-PSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQL 98 (290)
T ss_pred ccceeeEEEEE-cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhh
Confidence 35889999999 78999999999999999999999986421 01123455432
Q ss_pred cccchHHH---------------------HHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1065 FEISPVDR---------------------IFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1065 ~~l~~~d~---------------------i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
....+.+. ++..+|.. +.......+++ ++.++++.+.+++.+|++||||||++|.|+
T Consensus 99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~ 178 (290)
T PRK13634 99 FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP 178 (290)
T ss_pred hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 01122222 23344443 22334455666 455667778888999999999999988888
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.....+ ..++..+.++.|.|+|++||+++.+..+++ +|.+++.|.++..|
T Consensus 179 ~~~~~l-~~~L~~l~~~~g~tviiitHd~~~~~~~~d--rv~~l~~G~i~~~g 228 (290)
T PRK13634 179 KGRKEM-MEMFYKLHKEKGLTTVLVTHSMEDAARYAD--QIVVMHKGTVFLQG 228 (290)
T ss_pred HHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEC
Confidence 765543 466777766558899999999999998888 99999999888765
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-16 Score=184.12 Aligned_cols=159 Identities=15% Similarity=0.126 Sum_probs=115.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc---
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF--- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~--- 1065 (1288)
..++++++|++ .+|++++|+||||||||||||+|+++... .+.-.|+|+...
T Consensus 41 ~~~L~~isl~i-~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~ 119 (400)
T PRK10070 41 SLGVKDASLAI-EEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP 119 (400)
T ss_pred eEEEEeEEEEE-cCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC
Confidence 35789999999 78999999999999999999999985411 011235554431
Q ss_pred ccchHHH---------------------HHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1066 EISPVDR---------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1066 ~l~~~d~---------------------i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+++.+. ++..+|..+.+....+.+|+ +.++++.+.+++.+|++||||||++|.|+..
T Consensus 120 ~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~ 199 (400)
T PRK10070 120 HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLI 199 (400)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 1222222 23344444444445566664 5566778888999999999999999999886
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
...+ +.++..+.++.++|+||+||+++.+..+++ +|.+++.|.++..|+
T Consensus 200 r~~l-~~~L~~l~~~~g~TIIivTHd~~~~~~~~D--ri~vL~~G~i~~~g~ 248 (400)
T PRK10070 200 RTEM-QDELVKLQAKHQRTIVFISHDLDEAMRIGD--RIAIMQNGEVVQVGT 248 (400)
T ss_pred HHHH-HHHHHHHHHHCCCeEEEEECCHHHHHHhCC--EEEEEECCEEEecCC
Confidence 5544 456666655458899999999999988888 899999999887654
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-14 Score=180.30 Aligned_cols=150 Identities=17% Similarity=0.118 Sum_probs=101.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------h---hcCccccccc----cccchHHHH-----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------A---QVGADVPAEI----FEISPVDRI----- 1073 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------a---q~G~~vPa~~----~~l~~~d~i----- 1073 (1288)
..+.++++|.+ .+|++++|+||||||||||||+|+|+... . .+ .|+++.. ..+++.+.+
T Consensus 332 ~~il~~vsl~i-~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i-~y~~q~~~~l~~~~tv~e~l~~~~~ 409 (635)
T PRK11147 332 KQLVKDFSAQV-QRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEV-AYFDQHRAELDPEKTVMDNLAEGKQ 409 (635)
T ss_pred eEEEcCcEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEE-EEEeCcccccCCCCCHHHHHHhhcc
Confidence 46899999999 78999999999999999999999986421 1 11 2444431 112233322
Q ss_pred --------------HHhcCch-hhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 000778 1074 --------------FVRMGAK-DHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVH 1137 (1288)
Q Consensus 1074 --------------~~~ig~~-d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~ 1137 (1288)
+.+++.. +......+++|+ |.++++.+..++.+|.|||||||++|.|+.... .+.+ +.+
T Consensus 410 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~----~l~~-~l~ 484 (635)
T PRK11147 410 EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLE----LLEE-LLD 484 (635)
T ss_pred cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH----HHHH-HHH
Confidence 2233332 233444566774 555677778889999999999996666665332 2333 334
Q ss_pred ccCcEEEEEcCCchhhhhhcCCCceEEee-eEEEE
Q 000778 1138 KVQCRGLFSTHYHRLAVDYKKDPRVSLCH-MACQV 1171 (1288)
Q Consensus 1138 ~~~~~vl~~TH~~~l~~~~~~~~~v~~~~-~~~~~ 1171 (1288)
..++++|+||||.+++..+++ ++..++ .|.+.
T Consensus 485 ~~~~tvi~vSHd~~~~~~~~d--~i~~l~~~g~i~ 517 (635)
T PRK11147 485 SYQGTVLLVSHDRQFVDNTVT--ECWIFEGNGKIG 517 (635)
T ss_pred hCCCeEEEEECCHHHHHHhcC--EEEEEeCCCeEE
Confidence 446799999999999998888 777776 56543
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6e-16 Score=177.01 Aligned_cols=157 Identities=17% Similarity=0.191 Sum_probs=113.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCcccccccc----cc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEIF----EI 1067 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~~----~l 1067 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+... .+...|+|+... ..
T Consensus 23 ~~vl~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 101 (280)
T PRK13633 23 KLALDDVNLEV-KKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVAT 101 (280)
T ss_pred cceeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccc
Confidence 46899999999 78999999999999999999999985410 111234554321 00
Q ss_pred chH---------------------HHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1068 SPV---------------------DRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1068 ~~~---------------------d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
.+. ..++.++|..+.+.....++| ++.++++.+.+++.+|+|||||||++|.|+....
T Consensus 102 ~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~ 181 (280)
T PRK13633 102 IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRR 181 (280)
T ss_pred cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 111 122334455444445556666 4556677778889999999999999999988766
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.+. .++..+.++.|+++|++||+++.+.. ++ ++.+++.|.++..|
T Consensus 182 ~l~-~~l~~l~~~~g~tillvtH~~~~~~~-~d--~v~~l~~G~i~~~g 226 (280)
T PRK13633 182 EVV-NTIKELNKKYGITIILITHYMEEAVE-AD--RIIVMDSGKVVMEG 226 (280)
T ss_pred HHH-HHHHHHHHhcCCEEEEEecChHHHhc-CC--EEEEEECCEEEEec
Confidence 554 67777765458999999999999865 66 89999988877655
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-16 Score=176.68 Aligned_cols=159 Identities=18% Similarity=0.132 Sum_probs=114.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH----------------------HhhcCccccccc----cc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------------LAQVGADVPAEI----FE 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i----------------------laq~G~~vPa~~----~~ 1066 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+.- +.....|+|+.. ..
T Consensus 19 ~~~l~~vs~~i-~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 97 (283)
T PRK13636 19 THALKGININI-KKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS 97 (283)
T ss_pred CeeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcc
Confidence 46889999999 7899999999999999999999998631 011123555542 11
Q ss_pred cchHHHH---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1067 ISPVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1067 l~~~d~i---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
..+.+.+ +.++|..+........++ ++.++++.+.+++.+|+|||||||++|.|+...
T Consensus 98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~ 177 (283)
T PRK13636 98 ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177 (283)
T ss_pred ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 1222222 233333333333445556 455667778888999999999999888888755
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+ ..++..+.++.|.|+|++||+++.+..+++ ++.+++.|.++..|.
T Consensus 178 ~~l-~~~l~~l~~~~g~tillvsH~~~~~~~~~d--ri~~l~~G~i~~~g~ 225 (283)
T PRK13636 178 SEI-MKLLVEMQKELGLTIIIATHDIDIVPLYCD--NVFVMKEGRVILQGN 225 (283)
T ss_pred HHH-HHHHHHHHHhCCCEEEEEecCHHHHHHhCC--EEEEEECCEEEEeCC
Confidence 544 466677765558899999999999988888 899999998877653
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.2e-16 Score=173.84 Aligned_cols=158 Identities=19% Similarity=0.221 Sum_probs=109.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc---ccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF---EISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~---~l~~ 1069 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... ...+
T Consensus 15 ~~il~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (258)
T PRK13548 15 RTLLDDVSLTL-RPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTV 93 (258)
T ss_pred eeeeeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCH
Confidence 46889999999 78999999999999999999999986411 011234454321 1223
Q ss_pred HHHH---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhC------CCCcEEEEeCCCCCCCh
Q 000778 1070 VDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSA------TRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1070 ~d~i---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a------~~~sLvLLDEpg~GTs~ 1121 (1288)
.+.+ +..+|..+........++ ++.++++.+.+++ .+|+++|||||++|.|+
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~ 173 (258)
T PRK13548 94 EEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173 (258)
T ss_pred HHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCH
Confidence 3322 223333333333344555 4556677777777 48999999999888888
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.....+. .++..+.++.+.++|++||+++++..+++ +|.+++.|.++..+
T Consensus 174 ~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 223 (258)
T PRK13548 174 AHQHHVL-RLARQLAHERGLAVIVVLHDLNLAARYAD--RIVLLHQGRLVADG 223 (258)
T ss_pred HHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhcC--EEEEEECCEEEeeC
Confidence 8655544 56666653347899999999999988888 88888888766543
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.3e-16 Score=162.47 Aligned_cols=158 Identities=20% Similarity=0.215 Sum_probs=112.4
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH----------------------------HHhhcCcccccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV----------------------------ILAQVGADVPAE 1063 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~----------------------------ilaq~G~~vPa~ 1063 (1288)
...++.||+|.+ .++.+.+|+||+|||||||||++..+. +-.++|+.....
T Consensus 19 ~~~aL~~i~l~i-~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 19 DKHALKDINLDI-PKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred chhhhccCceec-cCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 457899999999 789999999999999999999998643 223444332111
Q ss_pred -ccccchHHHHHH--h-cC----------------------chhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1064 -IFEISPVDRIFV--R-MG----------------------AKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1064 -~~~l~~~d~i~~--~-ig----------------------~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
....+++|.+-- | .| +.|.+....-.++ ++.+++..+.++|.+|++||||||+
T Consensus 98 nPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPt 177 (253)
T COG1117 98 NPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177 (253)
T ss_pred CCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcc
Confidence 122445554321 0 01 1233333333455 4556778888899999999999997
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+..||.....| ..++..|.+ .-|+++|||.+..+.+..+ ...++++|.+++.|.
T Consensus 178 SALDPIsT~kI-EeLi~eLk~--~yTIviVTHnmqQAaRvSD--~taFf~~G~LvE~g~ 231 (253)
T COG1117 178 SALDPISTLKI-EELITELKK--KYTIVIVTHNMQQAARVSD--YTAFFYLGELVEFGP 231 (253)
T ss_pred cccCchhHHHH-HHHHHHHHh--ccEEEEEeCCHHHHHHHhH--hhhhhcccEEEEEcC
Confidence 77777755554 366666753 5799999999999999999 788999999998764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.1e-16 Score=172.17 Aligned_cols=156 Identities=13% Similarity=0.150 Sum_probs=109.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hh-cCcccccccc---ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQ-VGADVPAEIF---EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq-~G~~vPa~~~---~l~ 1068 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+... .+ .-.|+|+... .++
T Consensus 15 ~~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (242)
T TIGR03411 15 FKALNDLSLYV-DPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLT 93 (242)
T ss_pred eEEeeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCC
Confidence 46889999999 78999999999999999999999985311 01 1123333221 112
Q ss_pred hHHH-----------------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1069 PVDR-----------------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1069 ~~d~-----------------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
+.+. ++.++|..+.+....++++ ++.++++.+.+++.+|+++|||||++|
T Consensus 94 v~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~ 173 (242)
T TIGR03411 94 VFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAG 173 (242)
T ss_pred HHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccC
Confidence 2222 2233333333333344555 566678888888999999999999888
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.|+.....+ +.++..+.+ +.++|++||+++++..+++ ++.+++.|.++..+
T Consensus 174 LD~~~~~~l-~~~l~~~~~--~~tii~~sH~~~~~~~~~d--~i~~l~~g~~~~~~ 224 (242)
T TIGR03411 174 MTDEETEKT-AELLKSLAG--KHSVVVVEHDMEFVRSIAD--KVTVLHQGSVLAEG 224 (242)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCEEEEEECCHHHHHHhCC--EEEEEECCeEEeeC
Confidence 888865544 456666643 5799999999999988888 88888888776554
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-16 Score=174.27 Aligned_cols=156 Identities=22% Similarity=0.257 Sum_probs=110.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh---------hcCcccccccc---cc--ch---------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA---------QVGADVPAEIF---EI--SP--------- 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila---------q~G~~vPa~~~---~l--~~--------- 1069 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-.. +.-.|+|+... .+ .+
T Consensus 17 ~~vl~~vs~~i-~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~ 95 (251)
T PRK09544 17 RRVLSDVSLEL-KPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPG 95 (251)
T ss_pred ceEEEeEEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhcccc
Confidence 36889999999 789999999999999999999999864211 01134454321 10 11
Q ss_pred -----HHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEE
Q 000778 1070 -----VDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRG 1143 (1288)
Q Consensus 1070 -----~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~v 1143 (1288)
+..++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +.+|..+.++.++++
T Consensus 96 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~~~~~~g~ti 174 (251)
T PRK09544 96 TKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVAL-YDLIDQLRRELDCAV 174 (251)
T ss_pred ccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHHHhcCCEE
Confidence 1123345555555555566677 556667888888999999999999888888765544 456666655447899
Q ss_pred EEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1144 LFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1144 l~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
|++||+++++..+++ +|.+++. .++..
T Consensus 175 iivsH~~~~i~~~~d--~i~~l~~-~i~~~ 201 (251)
T PRK09544 175 LMVSHDLHLVMAKTD--EVLCLNH-HICCS 201 (251)
T ss_pred EEEecCHHHHHHhCC--EEEEECC-ceEee
Confidence 999999999988888 7777653 44443
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.9e-16 Score=176.38 Aligned_cols=157 Identities=15% Similarity=0.150 Sum_probs=113.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccc----cccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEI----FEIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~----~~l~ 1068 (1288)
..+.++++|++ .+|++++|+||||+||||||++|+|+.-. .+.-.|+|+.. ....
T Consensus 20 ~~~l~~vsl~i-~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~t 98 (279)
T PRK13635 20 TYALKDVSFSV-YEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT 98 (279)
T ss_pred ccceeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccccc
Confidence 45889999999 78999999999999999999999986411 11123444432 1112
Q ss_pred hHHH---------------------HHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 000778 1069 PVDR---------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1288)
Q Consensus 1069 ~~d~---------------------i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~a 1126 (1288)
+.+. ++..+|..+.+......+++ +.++++.+.+++.+|+|||||||++|.|+.....
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 178 (279)
T PRK13635 99 VQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRRE 178 (279)
T ss_pred HHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 2222 33344554444555566664 5556777788899999999999999999886655
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1127 IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1127 ia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+ +.++..+.++.++|+|++||+++.+.. ++ ++.+++.|.++..+
T Consensus 179 l-~~~l~~l~~~~~~tilivsH~~~~~~~-~d--~i~~l~~G~i~~~g 222 (279)
T PRK13635 179 V-LETVRQLKEQKGITVLSITHDLDEAAQ-AD--RVIVMNKGEILEEG 222 (279)
T ss_pred H-HHHHHHHHHcCCCEEEEEecCHHHHHc-CC--EEEEEECCEEEEEC
Confidence 4 466777766558999999999998864 66 89999988877655
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.5e-16 Score=170.51 Aligned_cols=152 Identities=16% Similarity=0.097 Sum_probs=108.7
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------hhcC-ccccccccccchHHH----
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------AQVG-ADVPAEIFEISPVDR---- 1072 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------aq~G-~~vPa~~~~l~~~d~---- 1072 (1288)
+..++++++|++ .+|++++|+||||+|||||+++|+|+.-. .+.+ .+.|. +++.+.
T Consensus 34 ~~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~----~tv~enl~~~ 108 (224)
T cd03220 34 EFWALKDVSFEV-PRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPE----LTGRENIYLN 108 (224)
T ss_pred CeEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCC----CcHHHHHHHH
Confidence 356899999999 78999999999999999999999986421 0111 11111 122221
Q ss_pred -----------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 000778 1073 -----------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1073 -----------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~ 1134 (1288)
++..++..+.+......++ ++.++++.++.++.+|+++|||||++|.|+.....+. .++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~-~~l~~ 187 (224)
T cd03220 109 GRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQ-RRLRE 187 (224)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 2233344443444445566 5666778888889999999999999999887655544 56666
Q ss_pred HHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1135 FVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1135 l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
+.++ +.++|++||+.+.+..+++ ++.+++.|.++.
T Consensus 188 ~~~~-~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~ 222 (224)
T cd03220 188 LLKQ-GKTVILVSHDPSSIKRLCD--RALVLEKGKIRF 222 (224)
T ss_pred HHhC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEe
Confidence 6555 7899999999999988887 888888877654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6e-16 Score=175.84 Aligned_cols=158 Identities=14% Similarity=0.060 Sum_probs=110.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc-----cc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF-----EI 1067 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~-----~l 1067 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+...|+|+... .+
T Consensus 26 ~~~l~~vsl~i-~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 104 (267)
T PRK15112 26 VEAVKPLSFTL-REGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQ 104 (267)
T ss_pred cceeeeeeEEe-cCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcch
Confidence 36899999999 78999999999999999999999986411 111234444321 00
Q ss_pred chH----------------------HHHHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1068 SPV----------------------DRIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1068 ~~~----------------------d~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+. ..++..+|.. +......+.++ ++.++++.+.+++.+|.+||||||++|.|+..
T Consensus 105 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 184 (267)
T PRK15112 105 RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM 184 (267)
T ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHH
Confidence 111 1123334442 22222334555 55667788888899999999999988888865
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
... ...+|..+.++.+.++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 185 ~~~-l~~~l~~~~~~~g~tviivsH~~~~~~~~~d--~i~~l~~G~i~~~~ 232 (267)
T PRK15112 185 RSQ-LINLMLELQEKQGISYIYVTQHLGMMKHISD--QVLVMHQGEVVERG 232 (267)
T ss_pred HHH-HHHHHHHHHHHcCcEEEEEeCCHHHHHHhcC--EEEEEECCEEEecC
Confidence 444 3456666655457899999999999988888 88888888776544
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-16 Score=180.09 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=114.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCccccccc-----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEI----- 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~----- 1064 (1288)
..+.+|++|++ .+|++++|+|+||||||||+|+|+|+.-. ...-.+|++..
T Consensus 34 ~~~l~~vsl~i-~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 34 LKAVDGVTLRL-YEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred eEEEeeEEEEE-cCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence 45889999999 78999999999999999999999985411 01123455442
Q ss_pred cccchHHHH-----------------------HHhcCch-hhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1065 FEISPVDRI-----------------------FVRMGAK-DHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1065 ~~l~~~d~i-----------------------~~~ig~~-d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
..+.+.+.+ +.++|.. +.+......+|+ +.++++.+++++.+|+|||+|||++|.
T Consensus 113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~L 192 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 192 (331)
T ss_pred CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 112233332 2233331 122333455665 445677778889999999999998888
Q ss_pred ChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1120 s~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|..-...+ ..+|..+.++.+.++||+|||++++..+++ +|.+++.|.++..|.
T Consensus 193 D~~~~~~i-~~lL~~l~~~~~~til~iTHdl~~~~~~~d--ri~vl~~G~ive~g~ 245 (331)
T PRK15079 193 DVSIQAQV-VNLLQQLQREMGLSLIFIAHDLAVVKHISD--RVLVMYLGHAVELGT 245 (331)
T ss_pred CHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 87755544 466777766568999999999999999998 999999999988764
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.6e-16 Score=173.71 Aligned_cols=156 Identities=16% Similarity=0.140 Sum_probs=108.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------------hhcCcccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------------AQVGADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------------aq~G~~vPa~~~ 1065 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+...
T Consensus 25 ~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 25 KQALKNVSMQI-PKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred eeeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 46899999999 78999999999999999999999986421 011124443321
Q ss_pred c--cchHHHH---------------------HHhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1066 E--ISPVDRI---------------------FVRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1066 ~--l~~~d~i---------------------~~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
. .++.+.+ +..++.. +.+......++ ++.++++.+.+++.+|+++|||||++
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 183 (258)
T PRK14268 104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTS 183 (258)
T ss_pred cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 1 1222222 1111211 11122233455 56667888888899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|.|+.....+ +.+++.+. + ++++|++||+++++..+++ ++.+++.|.++..+
T Consensus 184 ~LD~~~~~~l-~~~l~~l~-~-~~tiiivsH~~~~~~~~~d--~i~~l~~G~i~~~~ 235 (258)
T PRK14268 184 ALDPISTARI-EDLIMNLK-K-DYTIVIVTHNMQQAARISD--YTGFFLMGELIEFG 235 (258)
T ss_pred ccCHHHHHHH-HHHHHHHh-h-CCEEEEEECCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 8888866554 46666664 3 6899999999999988888 89999998887655
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.5e-16 Score=167.76 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=106.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--HHhhcCccc----cc----cccccchH---HHHHHhcCc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--ILAQVGADV----PA----EIFEISPV---DRIFVRMGA 1079 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--ilaq~G~~v----Pa----~~~~l~~~---d~i~~~ig~ 1079 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+. - ...|... +. ....++++ ..+|..+..
T Consensus 22 ~~~l~~~~~~i-~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~ 99 (194)
T cd03213 22 KQLLKNVSGKA-KPGELTAIMGPSGAGKSTLLNALAGRRTGL-GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTV 99 (194)
T ss_pred ccceecceEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCceEEEECCEeCchHhhhheEEEccCcccCCCCCcH
Confidence 46899999999 789999999999999999999999875 2 2223110 00 00011111 112233344
Q ss_pred hhhHhhccc--chH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCch-hhhh
Q 000778 1080 KDHIMAGQS--TFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHR-LAVD 1155 (1288)
Q Consensus 1080 ~d~i~~~~S--tf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~-l~~~ 1155 (1288)
.+++..... .++ ++.++++.+.+++.+|+++|||||++|.|+.....+ ..++..+.++ +.++|++||+++ ....
T Consensus 100 ~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l-~~~l~~~~~~-~~tiii~sh~~~~~~~~ 177 (194)
T cd03213 100 RETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQV-MSLLRRLADT-GRTIICSIHQPSSEIFE 177 (194)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHHhC-CCEEEEEecCchHHHHH
Confidence 444432211 455 566677888888999999999999999988765544 4667777554 889999999996 6777
Q ss_pred hcCCCceEEeeeEEEEe
Q 000778 1156 YKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1156 ~~~~~~v~~~~~~~~~~ 1172 (1288)
+++ ++.+++.|.++.
T Consensus 178 ~~d--~v~~l~~G~i~~ 192 (194)
T cd03213 178 LFD--KLLLLSQGRVIY 192 (194)
T ss_pred hcC--EEEEEeCCEEEe
Confidence 777 888888776653
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=172.52 Aligned_cols=156 Identities=16% Similarity=0.133 Sum_probs=109.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc---ccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF---EISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~---~l~~ 1069 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .+++
T Consensus 15 ~~il~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (255)
T PRK11231 15 KRILNDLSLSL-PTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITV 93 (255)
T ss_pred EEEEeeeeeEE-cCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccH
Confidence 46889999998 78999999999999999999999985310 111234554421 1222
Q ss_pred HHHH-------------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1070 VDRI-------------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1070 ~d~i-------------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+.+ +..+|..+.+......+| ++.++++.+.+++.+|+|+|||||++|.|+..
T Consensus 94 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (255)
T PRK11231 94 RELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH 173 (255)
T ss_pred HHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 2222 222333333333344555 56667888888999999999999988888875
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
...+ ..++..+.++ ++++|++||+++.+..+++ ++.+++.|.++..
T Consensus 174 ~~~l-~~~l~~l~~~-~~tiii~tH~~~~~~~~~d--~i~~l~~G~i~~~ 219 (255)
T PRK11231 174 QVEL-MRLMRELNTQ-GKTVVTVLHDLNQASRYCD--HLVVLANGHVMAQ 219 (255)
T ss_pred HHHH-HHHHHHHHHC-CCEEEEEECCHHHHHHhcC--EEEEEECCeEEEE
Confidence 5544 3566666554 7899999999999998888 8888888776544
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=170.85 Aligned_cols=158 Identities=18% Similarity=0.131 Sum_probs=112.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchH-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPV- 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~- 1070 (1288)
..+.++++|++ .+|++++|+||||+||||||++|+|+.-. .+...|+|+... ..++.
T Consensus 13 ~~il~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 91 (237)
T TIGR00968 13 FQALDDVNLEV-PTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRD 91 (237)
T ss_pred eeeeeeEEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHH
Confidence 35889999999 78999999999999999999999985311 011234444321 11111
Q ss_pred --------------------HHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1071 --------------------DRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1071 --------------------d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
+.++.+++..+........++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~-~ 170 (237)
T TIGR00968 92 NIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL-R 170 (237)
T ss_pred HHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 223334444443444445566 455667888888999999999999888888755444 4
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.++..+.++.++++|++||+++.+..+++ ++..+..|.++..+
T Consensus 171 ~~l~~~~~~~~~tvli~sH~~~~~~~~~d--~i~~l~~g~i~~~~ 213 (237)
T TIGR00968 171 SWLRKLHDEVHVTTVFVTHDQEEAMEVAD--RIVVMSNGKIEQIG 213 (237)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHhhcC--EEEEEECCEEEEec
Confidence 56666655447899999999999888888 88888888887654
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.6e-16 Score=179.52 Aligned_cols=158 Identities=13% Similarity=0.074 Sum_probs=114.8
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------h----hcCcccccccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------A----QVGADVPAEIF 1065 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------a----q~G~~vPa~~~ 1065 (1288)
.+++||+|++ .+|++++|+|+||||||||+++|+|+.-. . +.-.+||+...
T Consensus 21 ~~l~~vsl~i-~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 21 RAVDRISYSV-KQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEeeeEEEE-CCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 5899999999 88999999999999999999999986421 0 01234554421
Q ss_pred -----ccchH----------------------HHHHHhcCchh---hHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeC
Q 000778 1066 -----EISPV----------------------DRIFVRMGAKD---HIMAGQSTFLTEL-SETALMLSSATRNSLVVLDE 1114 (1288)
Q Consensus 1066 -----~l~~~----------------------d~i~~~ig~~d---~i~~~~Stf~~e~-~~~~~il~~a~~~sLvLLDE 1114 (1288)
.+.+. ..++.++|..+ .+......+|++| ++++.+++++.+|+|||+||
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE 179 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE 179 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 11111 12233444432 2333455677555 56777788899999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1115 LGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1115 pg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|++|.|+.-... ...+|..+.++.|.++||+|||++++..+++ +|.+++.|.++..|.
T Consensus 180 Pts~LD~~~~~~-il~lL~~l~~~~g~til~iTHdl~~~~~~ad--ri~vm~~G~ive~g~ 237 (326)
T PRK11022 180 PTTALDVTIQAQ-IIELLLELQQKENMALVLITHDLALVAEAAH--KIIVMYAGQVVETGK 237 (326)
T ss_pred CCCCCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 988888775544 3466777766568999999999999998898 999999999998764
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=174.64 Aligned_cols=156 Identities=15% Similarity=0.055 Sum_probs=110.1
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCcccccccc----ccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEIF----EIS 1068 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~~----~l~ 1068 (1288)
.+++|++|++ .+|++++|+||||+|||||||+|+|+.-. ...-.|+|+... ..+
T Consensus 16 ~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 94 (274)
T PRK13644 16 PALENINLVI-KKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRT 94 (274)
T ss_pred ceeeeeEEEE-eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccch
Confidence 5789999999 78999999999999999999999985310 111234444321 112
Q ss_pred hHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 000778 1069 PVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1288)
Q Consensus 1069 ~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~a 1126 (1288)
+.+. ++..+|..+.+......++ ++.++++.+.+++.+|+|||||||++|.|+.....
T Consensus 95 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 174 (274)
T PRK13644 95 VEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 2222 2223344433344455566 45556777778899999999999999988875444
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1127 IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1127 ia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+.++..+.++ |.|+|++||+++.+. .++ +|.+++.|.++..|.
T Consensus 175 -l~~~l~~l~~~-g~til~~tH~~~~~~-~~d--~v~~l~~G~i~~~g~ 218 (274)
T PRK13644 175 -VLERIKKLHEK-GKTIVYITHNLEELH-DAD--RIIVMDRGKIVLEGE 218 (274)
T ss_pred -HHHHHHHHHhC-CCEEEEEecCHHHHh-hCC--EEEEEECCEEEEECC
Confidence 45667777654 899999999999885 477 899999898876653
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=178.98 Aligned_cols=159 Identities=13% Similarity=0.123 Sum_probs=113.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------h----hcCccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------A----QVGADVPAEI 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------a----q~G~~vPa~~ 1064 (1288)
..+++|++|++ .+|++++|+|+||||||||+|+|+|+.-. . ..-.+||+..
T Consensus 20 ~~~l~~vsl~i-~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 20 VKAVDRVSMTL-TEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred EEEEeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 45899999999 78999999999999999999999987410 0 0113455442
Q ss_pred c-----ccchHHH---------------------------HHHhcCchh---hHhhcccchHHH-HHHHHHHHHhCCCCc
Q 000778 1065 F-----EISPVDR---------------------------IFVRMGAKD---HIMAGQSTFLTE-LSETALMLSSATRNS 1108 (1288)
Q Consensus 1065 ~-----~l~~~d~---------------------------i~~~ig~~d---~i~~~~Stf~~e-~~~~~~il~~a~~~s 1108 (1288)
. .+.+.+. ++.++|..+ .+......+|++ .++++.+.+++.+|+
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ 178 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCC
Confidence 1 1111111 223333332 122333456654 456777888899999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1109 LVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1109 LvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|||+|||++|.|+.-...+ ..+|..+.++.|.++||+|||++++..+++ +|.+++.|.++..|.
T Consensus 179 llilDEPts~LD~~~~~~i-~~lL~~l~~~~g~tii~itHdl~~v~~~~d--ri~vm~~G~ive~g~ 242 (330)
T PRK15093 179 LLIADEPTNAMEPTTQAQI-FRLLTRLNQNNNTTILLISHDLQMLSQWAD--KINVLYCGQTVETAP 242 (330)
T ss_pred EEEEeCCCCcCCHHHHHHH-HHHHHHHHHhcCCEEEEEECCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 9999999888887654443 466777766568999999999999999998 999999999988764
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=172.35 Aligned_cols=157 Identities=18% Similarity=0.097 Sum_probs=110.1
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------h------------hcCccccccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------A------------QVGADVPAEI 1064 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------a------------q~G~~vPa~~ 1064 (1288)
.+++|++|++ .+|++++|+||||+|||||||+|+|+.-. . +.-.|+|+..
T Consensus 17 ~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (253)
T TIGR02323 17 KGCRDVSFDL-YPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNP 95 (253)
T ss_pred eEeecceEEE-eCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCc
Confidence 5789999999 78999999999999999999999986310 0 0113444332
Q ss_pred c-----ccchHHH----------------------HHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1065 F-----EISPVDR----------------------IFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1065 ~-----~l~~~d~----------------------i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
. .+...+. ++..++.. ..+......++ ++.++++.+.+++.+|+++|||||
T Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP 175 (253)
T TIGR02323 96 RDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP 175 (253)
T ss_pred ccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1 0111111 22333433 23333445555 556678888889999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
++|.|+.....+. .++..+.++.+.++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 176 ~~~LD~~~~~~l~-~~l~~~~~~~~~tii~vsH~~~~~~~~~d--~~~~l~~G~i~~~~ 231 (253)
T TIGR02323 176 TGGLDVSVQARLL-DLLRGLVRDLGLAVIIVTHDLGVARLLAQ--RLLVMQQGRVVESG 231 (253)
T ss_pred CccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcC--EEEEEECCEEEEEC
Confidence 8888888665544 55555555457899999999999988887 88888888877654
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=172.63 Aligned_cols=157 Identities=13% Similarity=0.078 Sum_probs=110.5
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------h----------------hcCcccccccc-cc---
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------A----------------QVGADVPAEIF-EI--- 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------a----------------q~G~~vPa~~~-~l--- 1067 (1288)
.++++++|.+ .+|++++|+||||+|||||||+|+|+.-. + +...|+|+... .+
T Consensus 17 ~il~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 17 PLVHGVSLTL-QRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred ceecceEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence 5788999999 78999999999999999999999987422 0 11124444421 01
Q ss_pred -chHH-------------------HHHHhcCchh---hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1068 -SPVD-------------------RIFVRMGAKD---HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1068 -~~~d-------------------~i~~~ig~~d---~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+.+ .++..++..+ .+......++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~ 175 (254)
T PRK10418 96 HTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVA 175 (254)
T ss_pred ccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHH
Confidence 1111 1222333322 1233345566 56667888888999999999999988888875
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
... ...+|+.+.++.|.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 176 ~~~-l~~~L~~~~~~~g~til~~sH~~~~~~~~~d--~v~~l~~G~i~~~~ 223 (254)
T PRK10418 176 QAR-ILDLLESIVQKRALGMLLVTHDMGVVARLAD--DVAVMSHGRIVEQG 223 (254)
T ss_pred HHH-HHHHHHHHHHhcCcEEEEEecCHHHHHHhCC--EEEEEECCEEEEec
Confidence 544 4466666765558899999999999988888 88888888876654
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.5e-16 Score=167.52 Aligned_cols=157 Identities=20% Similarity=0.174 Sum_probs=108.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH-HHhhcCccc----c------ccc--cccchH---HHHHHh
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-ILAQVGADV----P------AEI--FEISPV---DRIFVR 1076 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~-ilaq~G~~v----P------a~~--~~l~~~---d~i~~~ 1076 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+. +....|... + ... ..++++ ..++..
T Consensus 13 ~~~l~~is~~i-~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (200)
T cd03217 13 KEILKGVNLTI-KKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPG 91 (200)
T ss_pred EEeeeccceEE-CCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccC
Confidence 35788999998 789999999999999999999999973 222333111 0 000 001111 112333
Q ss_pred cCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1077 MGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1077 ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
+...+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +.++..+.++ ++++|++||+++.+..
T Consensus 92 ~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~~~L~~~~~~-~~tiii~sh~~~~~~~ 169 (200)
T cd03217 92 VKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLV-AEVINKLREE-GKSVLIITHYQRLLDY 169 (200)
T ss_pred ccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHHC-CCEEEEEecCHHHHHH
Confidence 334444433324566 556677888888999999999999888888755544 4666667554 7899999999998877
Q ss_pred -hcCCCceEEeeeEEEEecC
Q 000778 1156 -YKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1156 -~~~~~~v~~~~~~~~~~~g 1174 (1288)
+++ ++..++.|.++..+
T Consensus 170 ~~~d--~i~~l~~G~i~~~~ 187 (200)
T cd03217 170 IKPD--RVHVLYDGRIVKSG 187 (200)
T ss_pred hhCC--EEEEEECCEEEEEc
Confidence 677 88888888877655
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.8e-16 Score=174.29 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=110.4
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc-c---cch
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF-E---ISP 1069 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~-~---l~~ 1069 (1288)
.+.+|++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... . ..+
T Consensus 23 ~~l~~isl~i-~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v 101 (269)
T PRK13648 23 FTLKDVSFNI-PKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIV 101 (269)
T ss_pred cceeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccH
Confidence 5889999999 78999999999999999999999986411 111234444321 0 111
Q ss_pred HH---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1070 VD---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1070 ~d---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.+ .++..++..+........++ ++.++++.+.+++.+|+|+|||||++|.|+.....+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l 181 (269)
T PRK13648 102 KYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL 181 (269)
T ss_pred HHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 11 12233344333334445566 556677888889999999999999999988866655
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
. .++..+.++.++++|++||+.+.+.. ++ +|.+++.|.++..+
T Consensus 182 ~-~~L~~~~~~~~~tiiivtH~~~~~~~-~d--~i~~l~~G~i~~~g 224 (269)
T PRK13648 182 L-DLVRKVKSEHNITIISITHDLSEAME-AD--HVIVMNKGTVYKEG 224 (269)
T ss_pred H-HHHHHHHHhcCCEEEEEecCchHHhc-CC--EEEEEECCEEEEec
Confidence 4 56666655457899999999998875 66 88888888877655
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=159.66 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=107.4
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--------------------HHhhcCcccccccc-ccc--
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF-EIS-- 1068 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--------------------ilaq~G~~vPa~~~-~l~-- 1068 (1288)
++-+.++++|+. .+|++++|+||||+|||||||.++|-. -||+.-...|+.+. .++
T Consensus 13 Gr~ll~~vsl~~-~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 13 GRRLLDGVSLDL-RPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred cceeccCcceec-cCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 567899999998 899999999999999999999999821 23443334444321 111
Q ss_pred -----------------------hHHHHHHhcCchhhHhhcccchH-HHHHHH--HHHHHhCCC----CcEEEEeCCCCC
Q 000778 1069 -----------------------PVDRIFVRMGAKDHIMAGQSTFL-TELSET--ALMLSSATR----NSLVVLDELGRG 1118 (1288)
Q Consensus 1069 -----------------------~~d~i~~~ig~~d~i~~~~Stf~-~e~~~~--~~il~~a~~----~sLvLLDEpg~G 1118 (1288)
+..+.+.+.+....-....-+++ +|.+++ +..|+.... +..++||||++.
T Consensus 92 v~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsa 171 (259)
T COG4559 92 VQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171 (259)
T ss_pred HHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccc
Confidence 12223333332222222222333 566654 555655443 359999999444
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
.|..-... ...+...|+++ |+.|+.+-||++++..++| +|+++|.|+++..|.+
T Consensus 172 LDi~HQ~~-tl~laR~la~~-g~~V~~VLHDLNLAA~YaD--rivll~~Grv~a~g~p 225 (259)
T COG4559 172 LDIAHQHH-TLRLARQLARE-GGAVLAVLHDLNLAAQYAD--RIVLLHQGRVIASGSP 225 (259)
T ss_pred cchHHHHH-HHHHHHHHHhc-CCcEEEEEccchHHHHhhh--eeeeeeCCeEeecCCH
Confidence 44333333 34677788776 7999999999999999999 9999999999998854
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.6e-16 Score=163.53 Aligned_cols=145 Identities=16% Similarity=0.157 Sum_probs=101.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCc-----cccccc-cccchH--HHHHHhcCchh-hH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA-----DVPAEI-FEISPV--DRIFVRMGAKD-HI 1083 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~-----~vPa~~-~~l~~~--d~i~~~ig~~d-~i 1083 (1288)
..++++++|++ .+|++++|+||||+|||||||++.. ..|. ..+... ..+.++ ...+.+++... .+
T Consensus 8 ~~~l~~isl~i-~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~ 81 (176)
T cd03238 8 VHNLQNLDVSI-PLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTL 81 (176)
T ss_pred eeeecceEEEE-cCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCcccccccccEEEEhHHHHHHHcCCCcccc
Confidence 57789999999 7899999999999999999998842 1121 111110 011122 23556677654 35
Q ss_pred hhcccchHH-HHHHHHHHHHhCCC--CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCC
Q 000778 1084 MAGQSTFLT-ELSETALMLSSATR--NSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDP 1160 (1288)
Q Consensus 1084 ~~~~Stf~~-e~~~~~~il~~a~~--~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~ 1160 (1288)
.....+++. +.++++.+.+++.+ |+++|||||++|.|+.....+. .++..+.+ .+.++|++||+++++. .++
T Consensus 82 ~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~-~~l~~~~~-~g~tvIivSH~~~~~~-~~d-- 156 (176)
T cd03238 82 GQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL-EVIKGLID-LGNTVILIEHNLDVLS-SAD-- 156 (176)
T ss_pred CCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHh-CCCEEEEEeCCHHHHH-hCC--
Confidence 555667774 45567777778889 9999999999998888666554 45555654 4899999999999874 566
Q ss_pred ceEEeeeE
Q 000778 1161 RVSLCHMA 1168 (1288)
Q Consensus 1161 ~v~~~~~~ 1168 (1288)
++..+..|
T Consensus 157 ~i~~l~~g 164 (176)
T cd03238 157 WIIDFGPG 164 (176)
T ss_pred EEEEECCC
Confidence 66666544
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=8e-16 Score=181.65 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=114.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------h--------------------hcCccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------A--------------------QVGADVPAEI 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------a--------------------q~G~~vPa~~ 1064 (1288)
..+.+|++|++ .+|++++|+||||||||||||+|+++.-. . +.-.||++..
T Consensus 37 ~~~l~~vsf~i-~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 37 VVGVANASLDI-EEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred EEEEEeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 56789999999 78999999999999999999999985411 0 0123444432
Q ss_pred cc---cchHHHH---------------------HHhcCchhhHhhcccchHHH-HHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1065 FE---ISPVDRI---------------------FVRMGAKDHIMAGQSTFLTE-LSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1065 ~~---l~~~d~i---------------------~~~ig~~d~i~~~~Stf~~e-~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
.- .++.+.+ +..+|..+........++++ .++++.+.+++.+|+++|||||++|.
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~L 195 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSAL 195 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 21 2222222 22333333333344556644 45677778889999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1120 s~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|+.....+. .++..+.++.+.|+||+||+++++..+++ +|.+++.|.++..|+
T Consensus 196 D~~~r~~l~-~~L~~l~~~~~~TII~iTHdl~e~~~l~D--rI~vl~~G~iv~~g~ 248 (382)
T TIGR03415 196 DPLIRTQLQ-DELLELQAKLNKTIIFVSHDLDEALKIGN--RIAIMEGGRIIQHGT 248 (382)
T ss_pred CHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEecC
Confidence 998766654 45555655558999999999999999898 999999999987764
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=169.17 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=110.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------------hhcCcccccccc-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------------AQVGADVPAEIF- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------------aq~G~~vPa~~~- 1065 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+...
T Consensus 15 ~~il~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (242)
T PRK11124 15 HQALFDITLDC-PQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNL 93 (242)
T ss_pred eeeEeeeeeEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccc
Confidence 35789999999 78999999999999999999999986310 011134554321
Q ss_pred --ccchHHHH----------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1066 --EISPVDRI----------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1066 --~l~~~d~i----------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
.+++.+.+ +..+|....+......++ ++.++++.+.+++.+|+|+|||||++|.|
T Consensus 94 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD 173 (242)
T PRK11124 94 WPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173 (242)
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCC
Confidence 12223322 222333333333344455 56667888888899999999999988888
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+..... ...+++.+.++ +.++|++||+.+.+..+++ ++.++..|.++..+
T Consensus 174 ~~~~~~-l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d--~i~~l~~g~i~~~~ 223 (242)
T PRK11124 174 PEITAQ-IVSIIRELAET-GITQVIVTHEVEVARKTAS--RVVYMENGHIVEQG 223 (242)
T ss_pred HHHHHH-HHHHHHHHHHc-CCEEEEEeCCHHHHHHhcC--EEEEEECCEEEEeC
Confidence 875444 34667777543 7899999999999988887 88888888877654
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=175.36 Aligned_cols=157 Identities=19% Similarity=0.159 Sum_probs=112.2
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCccccccc----c
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEI----F 1065 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~----~ 1065 (1288)
.+++|++|.+ .+|++++|+||||+|||||||+|+|+... .+...||++.. .
T Consensus 20 ~~l~~vsl~i-~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 98 (288)
T PRK13643 20 RALFDIDLEV-KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF 98 (288)
T ss_pred cceeeeEEEE-cCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcc
Confidence 5889999999 78999999999999999999999986411 01112444431 1
Q ss_pred ccchHHHH---------------------HHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1066 EISPVDRI---------------------FVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1066 ~l~~~d~i---------------------~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
..++.+.+ +..+|.. +........++ ++.++++.+..++.+|++||||||++|.|+.
T Consensus 99 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~ 178 (288)
T PRK13643 99 EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178 (288)
T ss_pred cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence 11222222 2223332 12223334455 5666788888889999999999999998887
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
....+ ..++..+.++ |.|+|++||+++++..+++ +|.+++.|.++..|.
T Consensus 179 ~~~~l-~~~l~~l~~~-g~til~vtHd~~~~~~~~d--ri~~l~~G~i~~~g~ 227 (288)
T PRK13643 179 ARIEM-MQLFESIHQS-GQTVVLVTHLMDDVADYAD--YVYLLEKGHIISCGT 227 (288)
T ss_pred HHHHH-HHHHHHHHHC-CCEEEEEecCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 55544 4677777654 8899999999999988888 999999998887653
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=169.86 Aligned_cols=153 Identities=16% Similarity=0.123 Sum_probs=107.8
Q ss_pred ccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchHHH----
Q 000778 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVDR---- 1072 (1288)
Q Consensus 1018 di~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~d~---- 1072 (1288)
+++|++ .+|++++|+||||+|||||||+|+|+... .....|+|+... .+++.+.
T Consensus 17 ~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 17 RFDLTV-ERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLG 95 (232)
T ss_pred eeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcc
Confidence 788988 78999999999999999999999986411 011124444321 1222222
Q ss_pred -----------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 000778 1073 -----------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1073 -----------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~ 1134 (1288)
++..+|....+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ ..++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~-~~~l~~ 174 (232)
T PRK10771 96 LNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEM-LTLVSQ 174 (232)
T ss_pred cccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHH
Confidence 2233444433444445566 456677788888999999999999888888865544 356666
Q ss_pred HHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1135 FVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1135 l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+.++.++++|++||+.+++..+++ ++..++.|.++..+
T Consensus 175 ~~~~~~~tiii~sH~~~~~~~~~d--~i~~l~~g~i~~~g 212 (232)
T PRK10771 175 VCQERQLTLLMVSHSLEDAARIAP--RSLVVADGRIAWDG 212 (232)
T ss_pred HHHhcCCEEEEEECCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 655447899999999999988888 88888888776544
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=167.13 Aligned_cols=151 Identities=17% Similarity=0.076 Sum_probs=106.6
Q ss_pred ccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc---ccchH
Q 000778 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1018 di~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
+++|++ .+ ++++|+||||+||||||++|+|+... .+.-.|+|+... .+++.
T Consensus 16 ~vsl~i-~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (214)
T cd03297 16 KIDFDL-NE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVR 93 (214)
T ss_pred CceEEE-cc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHH
Confidence 899998 77 99999999999999999999986421 011124444321 11222
Q ss_pred HH-------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHH
Q 000778 1071 DR-------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAES 1130 (1288)
Q Consensus 1071 d~-------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~a 1130 (1288)
+. ++.++|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ ..
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~ 172 (214)
T cd03297 94 ENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQL-LP 172 (214)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HH
Confidence 22 2334444444444455666 455667788888999999999999888888765544 46
Q ss_pred HHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1131 VLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1131 ile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
++..+.++.++++|++||+.+.+..+++ ++.+++.|.++..
T Consensus 173 ~l~~~~~~~~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~ 213 (214)
T cd03297 173 ELKQIKKNLNIPVIFVTHDLSEAEYLAD--RIVVMEDGRLQYI 213 (214)
T ss_pred HHHHHHHHcCcEEEEEecCHHHHHHhcC--EEEEEECCEEEec
Confidence 6666655447899999999999988888 8888888876543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=171.29 Aligned_cols=157 Identities=13% Similarity=0.140 Sum_probs=112.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------------------hhcCcc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------------------AQVGAD 1059 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------------------aq~G~~ 1059 (1288)
..++++++|++ .+|++++|+||||+||||||++|+|+... .+.-.|
T Consensus 18 ~~~l~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 96 (257)
T PRK10619 18 HEVLKGVSLQA-NAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTM 96 (257)
T ss_pred EEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEE
Confidence 46889999999 78999999999999999999999986411 011134
Q ss_pred cccccc---ccchHHHH----------------------HHhcCchhhH-hhcccchH-HHHHHHHHHHHhCCCCcEEEE
Q 000778 1060 VPAEIF---EISPVDRI----------------------FVRMGAKDHI-MAGQSTFL-TELSETALMLSSATRNSLVVL 1112 (1288)
Q Consensus 1060 vPa~~~---~l~~~d~i----------------------~~~ig~~d~i-~~~~Stf~-~e~~~~~~il~~a~~~sLvLL 1112 (1288)
+|+... .+.+.+.+ +.++|..+.+ ......++ ++.++++.+.+++.+|+++||
T Consensus 97 v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 176 (257)
T PRK10619 97 VFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLF 176 (257)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 443321 12233332 2233333222 23344555 455667788888999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1113 DELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1113 DEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|||++|.|+.....+. .++..+.+. |+++|++||+.+++..+++ +|.+++.|.++..+
T Consensus 177 DEPt~~LD~~~~~~l~-~~l~~l~~~-g~tiiivsH~~~~~~~~~d--~i~~l~~G~i~~~~ 234 (257)
T PRK10619 177 DEPTSALDPELVGEVL-RIMQQLAEE-GKTMVVVTHEMGFARHVSS--HVIFLHQGKIEEEG 234 (257)
T ss_pred eCCcccCCHHHHHHHH-HHHHHHHhc-CCEEEEEeCCHHHHHHhcC--EEEEEECCEEEEeC
Confidence 9999999888666544 566677554 8999999999999988888 89899988887655
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-16 Score=166.07 Aligned_cols=146 Identities=22% Similarity=0.235 Sum_probs=99.5
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccc-cccc------------cccchH---HHHHHhc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV-PAEI------------FEISPV---DRIFVRM 1077 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~v-Pa~~------------~~l~~~---d~i~~~i 1077 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.- ...|... .... ..++++ ..++..+
T Consensus 14 ~~l~~i~~~i-~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (178)
T cd03229 14 TVLNDVSLNI-EAGEIVALLGPSGSGKSTLLRCIAGLEE-PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHL 91 (178)
T ss_pred EEEeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCC
Confidence 5788999998 7899999999999999999999998542 2223111 0000 011111 0112222
Q ss_pred CchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhh
Q 000778 1078 GAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDY 1156 (1288)
Q Consensus 1078 g~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~ 1156 (1288)
...+++... ++ ++.++++.+++++.+|+++|||||++|.|+..... ...++..+.++.+.++|++||+++++..+
T Consensus 92 t~~~~l~~~---lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~-l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 167 (178)
T cd03229 92 TVLENIALG---LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE-VRALLKSLQAQLGITVVLVTHDLDEAARL 167 (178)
T ss_pred CHHHheeec---CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 233333222 44 56677888888999999999999988888875554 44667777654478999999999998877
Q ss_pred cCCCceEEeee
Q 000778 1157 KKDPRVSLCHM 1167 (1288)
Q Consensus 1157 ~~~~~v~~~~~ 1167 (1288)
++ ++..+..
T Consensus 168 ~d--~i~~l~~ 176 (178)
T cd03229 168 AD--RVVVLRD 176 (178)
T ss_pred cC--EEEEEeC
Confidence 87 6665543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=174.46 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=108.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--H--hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--L--AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--l--aq~G-----------------------~~vPa~~~ 1065 (1288)
..+.+|++|.+ .+|++++|+||||+|||||||+|+|+.- . ...| .|+|+...
T Consensus 52 ~~il~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (286)
T PRK14275 52 FEAVKKVNADI-LSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130 (286)
T ss_pred EEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC
Confidence 46889999999 7899999999999999999999998631 1 0111 23444321
Q ss_pred cc--chHHHH----------------------HHhcCc----hhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 EI--SPVDRI----------------------FVRMGA----KDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~l--~~~d~i----------------------~~~ig~----~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
.+ ++.+.+ +..+|. .+.+......++ ++.++++.+.+++.+|+|||||||+
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt 210 (286)
T PRK14275 131 PFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPT 210 (286)
T ss_pred CCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 11 222222 111221 112222334555 5666778888899999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+. .++..+.. +.++|++||+++++..+++ ++.+++.|.++..|
T Consensus 211 ~gLD~~~~~~l~-~~L~~~~~--~~tvIivsH~~~~~~~~~d--~i~~L~~G~i~~~g 263 (286)
T PRK14275 211 SALDPKATAKIE-DLIQELRG--SYTIMIVTHNMQQASRVSD--YTMFFYEGVLVEHA 263 (286)
T ss_pred ccCCHHHHHHHH-HHHHHHhc--CCeEEEEeCCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 888887655443 56666643 5799999999999988888 88888888877655
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-16 Score=166.53 Aligned_cols=147 Identities=13% Similarity=0.115 Sum_probs=103.2
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcc------cc----cc--ccccchHH------HHHHh
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD------VP----AE--IFEISPVD------RIFVR 1076 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~------vP----a~--~~~l~~~d------~i~~~ 1076 (1288)
+.++++|.+ .+|++++|+||||+|||||||+|+|+.- ...|.. +. .. ...++++. .++..
T Consensus 15 ~l~~vs~~i-~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEV-RAGEIVGIAGLVGNGQTELAEALFGLRP-PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 789999999 7899999999999999999999998642 222311 10 00 01122211 13334
Q ss_pred cCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1077 MGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1077 ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
+...+++..... ++ ++.++++.+.+++.+|+++|||||++|.|+.....+. .++..+.++ +.++|++||+++.+..
T Consensus 93 ~t~~e~l~~~~~-LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~-~~tiii~sh~~~~~~~ 169 (182)
T cd03215 93 LSVAENIALSSL-LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIY-RLIRELADA-GKAVLLISSELDELLG 169 (182)
T ss_pred CcHHHHHHHHhh-cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHH-HHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence 455555543211 44 5566778888889999999999999999988666544 566666554 7899999999999888
Q ss_pred hcCCCceEEeeeE
Q 000778 1156 YKKDPRVSLCHMA 1168 (1288)
Q Consensus 1156 ~~~~~~v~~~~~~ 1168 (1288)
+++ ++.+++.|
T Consensus 170 ~~d--~v~~l~~G 180 (182)
T cd03215 170 LCD--RILVMYEG 180 (182)
T ss_pred hCC--EEEEecCC
Confidence 887 77776654
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=172.40 Aligned_cols=159 Identities=18% Similarity=0.127 Sum_probs=113.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---- 1065 (1288)
..+++|++|++ .+|++++|+||||+|||||||+|+|+... .+...|+|+...
T Consensus 25 ~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 103 (268)
T PRK10419 25 QTVLNNVSLSL-KSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVN 103 (268)
T ss_pred eeeEeceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccC
Confidence 46899999999 78999999999999999999999985311 111234444320
Q ss_pred -ccchH----------------------HHHHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1066 -EISPV----------------------DRIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1066 -~l~~~----------------------d~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
...+. ..++.++|.. +........++ ++.++++.+++++.+|++||||||++|.|
T Consensus 104 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD 183 (268)
T PRK10419 104 PRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183 (268)
T ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 11111 1223334443 23333444555 56677888888999999999999988888
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+..... ...+++.+.++.++++|++||+.+++..+++ ++..+..|.++..+.
T Consensus 184 ~~~~~~-~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d--~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 184 LVLQAG-VIRLLKKLQQQFGTACLFITHDLRLVERFCQ--RVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHH-HHHHHHHHHHHcCcEEEEEECCHHHHHHhCC--EEEEEECCEEeeeCC
Confidence 865443 4466767765557899999999999998888 888888888776653
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=174.20 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=111.5
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------hhcCccccccc----ccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------AQVGADVPAEI----FEI 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------aq~G~~vPa~~----~~l 1067 (1288)
.+..+++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+.. ...
T Consensus 16 ~~l~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (275)
T PRK13639 16 EALKGINFKA-EKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP 94 (275)
T ss_pred eeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccc
Confidence 5788999999 78999999999999999999999985311 11123455542 111
Q ss_pred chHHHH---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1068 SPVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1068 ~~~d~i---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
.+.+.+ +.++|..+.......++| ++.++++.+.+++.+|+|+|||||++|.|+....
T Consensus 95 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~ 174 (275)
T PRK13639 95 TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174 (275)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHH
Confidence 222222 222333222223334555 4556677888889999999999999999988666
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+. .++..+.+. +.++|++||+++.+..+++ ++.+++.|.++..|+
T Consensus 175 ~l~-~~l~~l~~~-~~til~vtH~~~~~~~~~d--~i~~l~~G~i~~~g~ 220 (275)
T PRK13639 175 QIM-KLLYDLNKE-GITIIISTHDVDLVPVYAD--KVYVMSDGKIIKEGT 220 (275)
T ss_pred HHH-HHHHHHHHC-CCEEEEEecCHHHHHHhCC--EEEEEECCEEEEeCC
Confidence 554 566666554 8899999999999988888 899998888876653
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=171.79 Aligned_cols=157 Identities=21% Similarity=0.181 Sum_probs=111.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc---ccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF---EISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~---~l~~ 1069 (1288)
..++++++|.+ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... ..++
T Consensus 14 ~~il~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (256)
T TIGR03873 14 RLIVDGVDVTA-PPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTV 92 (256)
T ss_pred EEEEeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCH
Confidence 46889999999 78999999999999999999999985310 111235554421 1222
Q ss_pred HHHH-------------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1070 VDRI-------------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1070 ~d~i-------------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+.+ +.+++..+.+......++ ++.++++.+.+++.+|+|+|||||++|.|+..
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 172 (256)
T TIGR03873 93 RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA 172 (256)
T ss_pred HHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 2222 223333333333344555 45566777888899999999999988888875
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+ ..++..+.++ +.++|++||+++.+..+++ +|.+++.|.++..+
T Consensus 173 ~~~l-~~~l~~~~~~-~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~g 219 (256)
T TIGR03873 173 QLET-LALVRELAAT-GVTVVAALHDLNLAASYCD--HVVVLDGGRVVAAG 219 (256)
T ss_pred HHHH-HHHHHHHHhc-CCEEEEEeCCHHHHHHhCC--EEEEEeCCCEEEec
Confidence 5544 4667777554 7899999999999988888 88888888766543
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=178.22 Aligned_cols=159 Identities=14% Similarity=0.093 Sum_probs=114.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---- 1065 (1288)
..+++||+|++ .+|++++|+|+||||||||+++|+++.-. ...-.+||+...
T Consensus 28 ~~~l~~vsl~i-~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 106 (327)
T PRK11308 28 VKALDGVSFTL-ERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLN 106 (327)
T ss_pred eeEEeeeEEEE-CCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcC
Confidence 36899999999 78999999999999999999999985311 011134554321
Q ss_pred -ccchH----------------------HHHHHhcCchh-hHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1066 -EISPV----------------------DRIFVRMGAKD-HIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1066 -~l~~~----------------------d~i~~~ig~~d-~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
.+.+. ..++.++|..+ .+......+++ +.++++.+++++.+|+|||+|||++|.|
T Consensus 107 p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD 186 (327)
T PRK11308 107 PRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186 (327)
T ss_pred CccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCC
Confidence 11111 12233444432 23334456665 4456778888899999999999988887
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
......+ ..+|..+.++.|.++||+|||+.++..+++ +|.+++.|.++..|.
T Consensus 187 ~~~~~~i-~~lL~~l~~~~g~til~iTHdl~~~~~~ad--rv~vm~~G~ive~g~ 238 (327)
T PRK11308 187 VSVQAQV-LNLMMDLQQELGLSYVFISHDLSVVEHIAD--EVMVMYLGRCVEKGT 238 (327)
T ss_pred HHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 7755544 356666766568999999999999999998 999999999998764
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=170.18 Aligned_cols=156 Identities=17% Similarity=0.116 Sum_probs=108.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--H--hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--L--AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--l--aq~G-----------------------~~vPa~~~ 1065 (1288)
..++++++|.+ .+|++++|+||||+|||||||+|+|+.- . ...| .|+|+...
T Consensus 19 ~~il~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 97 (253)
T PRK14242 19 FQALHDISLEF-EQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN 97 (253)
T ss_pred eeeecceeEEE-eCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC
Confidence 36889999999 7899999999999999999999998631 1 1112 23443321
Q ss_pred c--cchHHHHH----------------------HhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 E--ISPVDRIF----------------------VRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~--l~~~d~i~----------------------~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
. ..+.+.+. ..++..+ .+......++ ++.++++.+.+++.+|+++|||||+
T Consensus 98 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt 177 (253)
T PRK14242 98 PFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPA 177 (253)
T ss_pred CCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1 12223221 1112111 1122234455 4556677788889999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ ..++..+. + +.++|++||+.+.+..+++ +|..++.|.++..+
T Consensus 178 ~~LD~~~~~~l-~~~l~~~~-~-~~tvii~tH~~~~~~~~~d--~v~~l~~G~i~~~g 230 (253)
T PRK14242 178 SALDPIATQKI-EELIHELK-A-RYTIIIVTHNMQQAARVSD--VTAFFYMGKLIEVG 230 (253)
T ss_pred ccCCHHHHHHH-HHHHHHHh-c-CCeEEEEEecHHHHHHhCC--EEEEEECCEEEEeC
Confidence 99888765554 45666663 3 6899999999999988888 88899888877654
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=173.27 Aligned_cols=157 Identities=12% Similarity=0.102 Sum_probs=110.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc----ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF----EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~----~l~ 1068 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... ..+
T Consensus 22 ~~il~~isl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 100 (271)
T PRK13632 22 NNALKNVSFEI-NEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGAT 100 (271)
T ss_pred ccceeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCccc
Confidence 46899999999 78999999999999999999999986411 111235554421 122
Q ss_pred hHHHH---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 000778 1069 PVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1288)
Q Consensus 1069 ~~d~i---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~a 1126 (1288)
+.+.+ +.++|..+.+......++ ++.++++.+.+++.+|+|+|||||++|.|+.....
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~ 180 (271)
T PRK13632 101 VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE 180 (271)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 22222 233344433444445566 55667788888899999999999988888875544
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1127 IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1127 ia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...++..+.++.+.++|++||+++.+. .++ ++.+++.|.++..+
T Consensus 181 -l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d--~v~~l~~G~i~~~g 224 (271)
T PRK13632 181 -IKKIMVDLRKTRKKTLISITHDMDEAI-LAD--KVIVFSEGKLIAQG 224 (271)
T ss_pred -HHHHHHHHHHhcCcEEEEEEechhHHh-hCC--EEEEEECCEEEEec
Confidence 446666665543589999999999885 566 88888888876554
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=172.82 Aligned_cols=158 Identities=18% Similarity=0.124 Sum_probs=113.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-----------------Hh------------hcCcccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------LA------------QVGADVPAE 1063 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-----------------la------------q~G~~vPa~ 1063 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.- +. +...|+|+.
T Consensus 19 ~~il~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 19 RKGCRDVSFDL-YPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred ceeeeeeeEEE-eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence 36889999999 7899999999999999999999998531 10 012355544
Q ss_pred cc-----ccchHH----------------------HHHHhcCchh-hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeC
Q 000778 1064 IF-----EISPVD----------------------RIFVRMGAKD-HIMAGQSTFL-TELSETALMLSSATRNSLVVLDE 1114 (1288)
Q Consensus 1064 ~~-----~l~~~d----------------------~i~~~ig~~d-~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDE 1114 (1288)
.. .+...+ .++..++... .+.....+++ ++.++++.+.+++.+|+++||||
T Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE 177 (258)
T PRK11701 98 PRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE 177 (258)
T ss_pred cccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 21 011111 1233444432 3344455666 56667888888999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1115 LGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1115 pg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|++|.|+.....+ ..++..+.++.|.++|++||+.+++..+++ ++.+++.|.++..+
T Consensus 178 Pt~~LD~~~~~~l-~~~l~~~~~~~~~tii~isH~~~~~~~~~d--~i~~l~~g~i~~~~ 234 (258)
T PRK11701 178 PTGGLDVSVQARL-LDLLRGLVRELGLAVVIVTHDLAVARLLAH--RLLVMKQGRVVESG 234 (258)
T ss_pred CcccCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCCHHHHHHhcC--EEEEEECCEEEEeC
Confidence 9888888754443 455666655457899999999999998888 88999999887665
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=167.46 Aligned_cols=163 Identities=19% Similarity=0.216 Sum_probs=109.7
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------ 1053 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------ 1053 (1288)
+.|.+++.+..+ ++..+.+|++|.+ .+|++++|+||||+|||||||+|+|+...
T Consensus 6 ~~i~~~~l~~~~-------~~~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 77 (225)
T PRK10247 6 PLLQLQNVGYLA-------GDAKILNNISFSL-RAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPE 77 (225)
T ss_pred ceEEEeccEEee-------CCceeeeccEEEE-cCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHH
Confidence 346666555322 1246899999999 78999999999999999999999986411
Q ss_pred --hhcCccccccccc--cchHH-------------------HHHHhcCchh-hHhhcccchH-HHHHHHHHHHHhCCCCc
Q 000778 1054 --AQVGADVPAEIFE--ISPVD-------------------RIFVRMGAKD-HIMAGQSTFL-TELSETALMLSSATRNS 1108 (1288)
Q Consensus 1054 --aq~G~~vPa~~~~--l~~~d-------------------~i~~~ig~~d-~i~~~~Stf~-~e~~~~~~il~~a~~~s 1108 (1288)
.+..+|+|+.... .++.+ .++..++..+ ........++ ++.++++.+.+++.+|+
T Consensus 78 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (225)
T PRK10247 78 IYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPK 157 (225)
T ss_pred HHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 1112345543210 12222 2333444432 2333445555 56667888888999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee
Q 000778 1109 LVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH 1166 (1288)
Q Consensus 1109 LvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~ 1166 (1288)
++|||||++|.|+.....+ ..++..+.++.++++|++||+++.+. .++ ++..++
T Consensus 158 llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tvii~sh~~~~~~-~~d--~i~~l~ 211 (225)
T PRK10247 158 VLLLDEITSALDESNKHNV-NEIIHRYVREQNIAVLWVTHDKDEIN-HAD--KVITLQ 211 (225)
T ss_pred EEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEECChHHHH-hCC--EEEEEe
Confidence 9999999999888755543 45666665545889999999999886 466 666663
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=173.76 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=110.3
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCccccccc----c
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEI----F 1065 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~----~ 1065 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+.. .
T Consensus 21 ~~l~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (280)
T PRK13649 21 RALFDVNLTI-EDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF 99 (280)
T ss_pred ceeeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence 5788999999 78999999999999999999999986310 01123555542 1
Q ss_pred ccchHHHH---------------------HHhcCchh-hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1066 EISPVDRI---------------------FVRMGAKD-HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1066 ~l~~~d~i---------------------~~~ig~~d-~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
...+.+.+ +..+|... ........++ ++.++++.+.+++.+|+|+|||||++|.|+.
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 179 (280)
T PRK13649 100 EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK 179 (280)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 11222222 22233321 2233344566 4556677888889999999999998888887
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
....+ ..+|..+.+. +.++|++||+++++..+++ ++.+++.|.++..+
T Consensus 180 ~~~~l-~~~l~~~~~~-~~tiiivsH~~~~~~~~~d--~i~~l~~G~i~~~g 227 (280)
T PRK13649 180 GRKEL-MTLFKKLHQS-GMTIVLVTHLMDDVANYAD--FVYVLEKGKLVLSG 227 (280)
T ss_pred HHHHH-HHHHHHHHHC-CCEEEEEeccHHHHHHhCC--EEEEEECCEEEEeC
Confidence 65544 4566666554 7899999999999988888 88888888876554
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=168.14 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=112.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh------------------hcCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA------------------QVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila------------------q~G~~vPa~~~---~l~~~d 1071 (1288)
..+.++++|.+ .+|++++|+||||+||||||++|+|+.-.. +.-.++|+... .+++.+
T Consensus 13 ~~il~~i~~~i-~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 91 (232)
T cd03300 13 FVALDGVSLDI-KEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFE 91 (232)
T ss_pred eeeeccceEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHH
Confidence 35788999998 789999999999999999999999864210 11123443321 112222
Q ss_pred ---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1072 ---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1072 ---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
.++.++|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l-~ 170 (232)
T cd03300 92 NIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM-Q 170 (232)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 22333444444444445565 566678888889999999999999999888865544 4
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.++..+.++.++|+|++||+.+++..+++ ++..++.|.++..+
T Consensus 171 ~~l~~~~~~~~~tiii~sh~~~~~~~~~d--~i~~l~~G~~~~~~ 213 (232)
T cd03300 171 LELKRLQKELGITFVFVTHDQEEALTMSD--RIAVMNKGKIQQIG 213 (232)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcC--EEEEEECCEEEecC
Confidence 56666765448899999999999888888 88888888776554
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=162.23 Aligned_cols=141 Identities=14% Similarity=0.135 Sum_probs=97.4
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccc-cccc----------cccchHH---HHHHhcCc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV-PAEI----------FEISPVD---RIFVRMGA 1079 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~v-Pa~~----------~~l~~~d---~i~~~ig~ 1079 (1288)
.+.++++|.+ .+|++++|+||||+|||||||+|+|+.- ...|... .... ..++++. .+|. ..+
T Consensus 16 ~~l~~~~~~i-~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (173)
T cd03246 16 PVLRNVSFSI-EPGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFS-GSI 92 (173)
T ss_pred cceeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEEcccCCHHHHHhheEEECCCCcccc-CcH
Confidence 5788899998 7899999999999999999999998643 2223211 0000 0111110 1121 123
Q ss_pred hhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1080 KDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1080 ~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
.+++ ++ ++.++++.+.+++.+|+++|||||++|.|+.....+. .++..+.++ +.++|++||+++++. .++
T Consensus 93 ~~~l------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~-~~tii~~sh~~~~~~-~~d 163 (173)
T cd03246 93 AENI------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALN-QAIAALKAA-GATRIVIAHRPETLA-SAD 163 (173)
T ss_pred HHHC------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHH-HHHHHHHhC-CCEEEEEeCCHHHHH-hCC
Confidence 3333 44 5667788888899999999999998888888666544 566666554 889999999999874 566
Q ss_pred CCceEEeeeE
Q 000778 1159 DPRVSLCHMA 1168 (1288)
Q Consensus 1159 ~~~v~~~~~~ 1168 (1288)
++.+++.|
T Consensus 164 --~v~~l~~G 171 (173)
T cd03246 164 --RILVLEDG 171 (173)
T ss_pred --EEEEEECC
Confidence 77666654
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=175.47 Aligned_cols=157 Identities=16% Similarity=0.080 Sum_probs=109.6
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh-------------------------hcCcccccccc---
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA-------------------------QVGADVPAEIF--- 1065 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila-------------------------q~G~~vPa~~~--- 1065 (1288)
.+.++++|++ .+|++++|+||||||||||||+|+|+.... +.-.|+|+...
T Consensus 25 ~il~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 103 (289)
T PRK13645 25 KALNNTSLTF-KKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQL 103 (289)
T ss_pred ceeeeeEEEE-eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhh
Confidence 5889999999 789999999999999999999999864210 01134444320
Q ss_pred -ccchHHHH---------------------HHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1066 -EISPVDRI---------------------FVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1066 -~l~~~d~i---------------------~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
...+.+.+ +..++.. +......+.++ ++.++++.+.+++.+|+|||||||++|.|+
T Consensus 104 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~ 183 (289)
T PRK13645 104 FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183 (289)
T ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 11222221 1222221 12222334555 555667888888999999999999888888
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..... .+.++..+.++.++++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 184 ~~~~~-l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d--~i~~l~~G~i~~~g 233 (289)
T PRK13645 184 KGEED-FINLFERLNKEYKKRIIMVTHNMDQVLRIAD--EVIVMHEGKVISIG 233 (289)
T ss_pred HHHHH-HHHHHHHHHHhcCCEEEEEecCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 76554 4466666655448899999999999888888 88889888877554
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=164.73 Aligned_cols=138 Identities=20% Similarity=0.150 Sum_probs=96.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------hhcCcccccccc----c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------AQVGADVPAEIF----E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------aq~G~~vPa~~~----~ 1066 (1288)
..+.++++|++ .+|++++|+||||||||||||+|+|+.-. .+.-.|+|+... .
T Consensus 5 ~~il~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 5 PEVLKGLNFAA-ERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred cceecceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 46889999999 78999999999999999999999985411 111234554421 1
Q ss_pred cchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1067 ISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1067 l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
..+.+. ++..+|..+.+....+.++ ++.++++.+.+++.+|+++|||||++|.|+...
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 122222 2233444444444455666 566677888888999999999999999998765
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
..+ ..++..+.++ ++++|++||+.+++
T Consensus 164 ~~~-~~~l~~~~~~-~~tili~sH~~~~~ 190 (190)
T TIGR01166 164 EQM-LAILRRLRAE-GMTVVISTHDVDLA 190 (190)
T ss_pred HHH-HHHHHHHHHc-CCEEEEEeeccccC
Confidence 554 4666667554 88999999998753
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.1e-16 Score=157.23 Aligned_cols=154 Identities=17% Similarity=0.149 Sum_probs=112.4
Q ss_pred ccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcc---------cccccc--ccchHHHHHHh----------
Q 000778 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD---------VPAEIF--EISPVDRIFVR---------- 1076 (1288)
Q Consensus 1018 di~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~---------vPa~~~--~l~~~d~i~~~---------- 1076 (1288)
.+++.+ ..|++++|+||+|+||||||+.|+|....++-... -|++.. .+..-..+|+.
T Consensus 17 ~fdl~v-~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLG 95 (231)
T COG3840 17 RFDLTV-PAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLG 95 (231)
T ss_pred EEEEee-cCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhccc
Confidence 445566 67899999999999999999999997654332111 133221 11111234444
Q ss_pred ---------------------cCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 000778 1077 ---------------------MGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1077 ---------------------ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~ 1134 (1288)
+|..+...+-..+++ +|.++++.+..+..+..++|||||++..+|.-.... .+++..
T Consensus 96 l~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eM-l~Lv~~ 174 (231)
T COG3840 96 LSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEM-LALVSQ 174 (231)
T ss_pred CCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHH-HHHHHH
Confidence 444444444344455 577788888889999999999999999998865543 478888
Q ss_pred HHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1135 FVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1135 l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
++.+.+.|+||+||..+.+..+.+ +++++..|++...|.
T Consensus 175 l~~E~~~TllmVTH~~~Da~~ia~--~~~fl~~Gri~~~g~ 213 (231)
T COG3840 175 LCDERKMTLLMVTHHPEDAARIAD--RVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHhhCCEEEEEeCCHHHHHHhhh--ceEEEeCCEEEeecc
Confidence 888889999999999999999988 999999999887763
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=175.06 Aligned_cols=156 Identities=18% Similarity=0.131 Sum_probs=111.6
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh-----------------------cCccccccc----cc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-----------------------VGADVPAEI----FE 1066 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq-----------------------~G~~vPa~~----~~ 1066 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+....+ ...|+|+.. ..
T Consensus 21 ~~l~~v~l~i-~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 21 PALNDISFSI-PRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred cceeeEEEEE-cCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 5889999999 7899999999999999999999998653211 112444432 11
Q ss_pred cchHHHH---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1067 ISPVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1067 l~~~d~i---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
..+.+.+ +..+|..+.+......++ ++.++++.+.+++.+|+|||||||++|.|+...
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~ 179 (282)
T PRK13640 100 ATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK 179 (282)
T ss_pred CCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 1222222 233343333333445565 556677888888999999999999999988866
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..+. .++..+.++.|+++|++||+++++. .++ ++.+++.|.++..+
T Consensus 180 ~~l~-~~l~~l~~~~g~tvli~tH~~~~~~-~~d--~i~~l~~G~i~~~g 225 (282)
T PRK13640 180 EQIL-KLIRKLKKKNNLTVISITHDIDEAN-MAD--QVLVLDDGKLLAQG 225 (282)
T ss_pred HHHH-HHHHHHHHhcCCEEEEEecCHHHHH-hCC--EEEEEECCEEEEeC
Confidence 5544 5666676545889999999999985 576 88899999887665
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-15 Score=169.54 Aligned_cols=155 Identities=18% Similarity=0.194 Sum_probs=109.4
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH--
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV-- 1070 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~-- 1070 (1288)
++++++|.+ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .+++.
T Consensus 11 ~l~~vsl~i-~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 89 (248)
T PRK03695 11 RLGPLSAEV-RAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY 89 (248)
T ss_pred eecceEEEE-cCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence 678999998 78999999999999999999999986410 011124444321 11111
Q ss_pred ------------------HHHHHhcCchhhHhhcccchHH-HHHHHHHHHHhCC-------CCcEEEEeCCCCCCChHHH
Q 000778 1071 ------------------DRIFVRMGAKDHIMAGQSTFLT-ELSETALMLSSAT-------RNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1071 ------------------d~i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~-------~~sLvLLDEpg~GTs~~Dg 1124 (1288)
+.++.++|..+.+......+++ +.++++.+.+++. +|+++|||||++|.|+...
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~ 169 (248)
T PRK03695 90 LTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQ 169 (248)
T ss_pred HHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHH
Confidence 2334445555444555566774 4455666666665 6799999999999988865
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..+. .++..+.++ +.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 170 ~~l~-~~L~~~~~~-~~tvi~~sH~~~~~~~~~d--~i~~l~~G~i~~~g 215 (248)
T PRK03695 170 AALD-RLLSELCQQ-GIAVVMSSHDLNHTLRHAD--RVWLLKQGKLLASG 215 (248)
T ss_pred HHHH-HHHHHHHhC-CCEEEEEecCHHHHHHhCC--EEEEEECCEEEEEC
Confidence 5544 666667554 7899999999999888888 88888888776544
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=179.19 Aligned_cols=154 Identities=16% Similarity=0.086 Sum_probs=111.0
Q ss_pred ccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc---ccchH
Q 000778 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1018 di~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
+++|.+ .+|++++|+||||||||||||+|+|+.-. .+.-.|+|+... .+++.
T Consensus 15 ~isl~i-~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (354)
T TIGR02142 15 DADFTL-PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR 93 (354)
T ss_pred EEEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence 789998 78999999999999999999999986411 011124444321 12222
Q ss_pred HH-------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHH
Q 000778 1071 DR-------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAES 1130 (1288)
Q Consensus 1071 d~-------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~a 1130 (1288)
+. ++..+|..+.+.....+++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +.
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l-~~ 172 (354)
T TIGR02142 94 GNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEI-LP 172 (354)
T ss_pred HHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHH-HH
Confidence 22 2333444444444456666 455667888888999999999999888888765544 46
Q ss_pred HHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1131 VLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1131 ile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+|..+.++.+.++|++||+++.+..+++ ++.+++.|.++..|.
T Consensus 173 ~L~~l~~~~g~tiiivtH~~~~~~~~~d--~i~~l~~G~i~~~g~ 215 (354)
T TIGR02142 173 YLERLHAEFGIPILYVSHSLQEVLRLAD--RVVVLEDGRVAAAGP 215 (354)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHHhCC--EEEEEeCCEEEEECC
Confidence 6666765558899999999999988888 899999998886654
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-15 Score=169.55 Aligned_cols=155 Identities=19% Similarity=0.149 Sum_probs=109.5
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh---------------------------hcCccccccccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA---------------------------QVGADVPAEIFE 1066 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila---------------------------q~G~~vPa~~~~ 1066 (1288)
.+.+|++|++ .+|++++|+||||+|||||||+|+|+.... +.-.|+|+....
T Consensus 15 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 15 EALKNINLDI-PKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred eeecceeEEE-CCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 5788999999 789999999999999999999999865211 111234433211
Q ss_pred --cchHHHH----------------------HHhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1067 --ISPVDRI----------------------FVRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1067 --l~~~d~i----------------------~~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
..+.+.+ +..+|.. +.+......++ ++.++++.+.+++.+|+++|||||++
T Consensus 94 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 173 (247)
T TIGR00972 94 FPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173 (247)
T ss_pred CCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 2222222 1222332 22333344555 45566778888899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|.|+.....+ ..++..+.+ ++++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 174 ~LD~~~~~~l-~~~l~~~~~--~~tiiivsH~~~~~~~~~d--~i~~l~~G~i~~~~ 225 (247)
T TIGR00972 174 ALDPIATGKI-EELIQELKK--KYTIVIVTHNMQQAARISD--RTAFFYDGELVEYG 225 (247)
T ss_pred cCCHHHHHHH-HHHHHHHHh--cCeEEEEecCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 8888865544 466666654 4799999999999988888 89999998877654
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-15 Score=186.39 Aligned_cols=157 Identities=15% Similarity=0.099 Sum_probs=115.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc-------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF------- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~------- 1065 (1288)
..++++++|++ .+|++++|+||||||||||||+|+|+... .+.-.++|+...
T Consensus 16 ~~il~~vsl~i-~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 94 (490)
T PRK10938 16 TKTLQLPSLTL-NAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPG 94 (490)
T ss_pred eeecccceEEE-cCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccc
Confidence 35889999999 78999999999999999999999986411 010123333210
Q ss_pred ----ccch-------------HHHHHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1066 ----EISP-------------VDRIFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1066 ----~l~~-------------~d~i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.+.+ +..++.++|..+......+++|+ +.++++.+.+++.+|+++|||||++|.|+.....+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 174 (490)
T PRK10938 95 EDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL 174 (490)
T ss_pred hhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 0111 22345566666655666777885 45567777888999999999999888888865544
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..++..+.++ |.++|++||+.+.+..+++ +|.+++.|.++..+
T Consensus 175 -~~~l~~~~~~-g~tvii~tH~~~~~~~~~d--~v~~l~~G~i~~~~ 217 (490)
T PRK10938 175 -AELLASLHQS-GITLVLVLNRFDEIPDFVQ--FAGVLADCTLAETG 217 (490)
T ss_pred -HHHHHHHHhc-CCeEEEEeCCHHHHHhhCC--EEEEEECCEEEEeC
Confidence 4677777654 8899999999999999888 88888888876544
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=176.89 Aligned_cols=177 Identities=11% Similarity=0.073 Sum_probs=120.4
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh-----------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----------------- 1054 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----------------- 1054 (1288)
+.|++++....+-.. .+...++++++|++ .+|++++|+|+||||||||+++|+++.-..
T Consensus 11 ~~L~i~~l~~~~~~~---~~~~~~l~~vsl~i-~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~ 86 (330)
T PRK09473 11 ALLDVKDLRVTFSTP---DGDVTAVNDLNFSL-RAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL 86 (330)
T ss_pred ceEEEeCeEEEEecC---CCCEEEEeeeEEEE-cCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcC
Confidence 456666654332110 11235899999999 789999999999999999999999865221
Q ss_pred ----------hcCcccccccc-----ccchHHH----------------------HHHhcCchh---hHhhcccchHHH-
Q 000778 1055 ----------QVGADVPAEIF-----EISPVDR----------------------IFVRMGAKD---HIMAGQSTFLTE- 1093 (1288)
Q Consensus 1055 ----------q~G~~vPa~~~-----~l~~~d~----------------------i~~~ig~~d---~i~~~~Stf~~e- 1093 (1288)
..-.+||+... .+.+.+. ++..+|..+ .+......+|++
T Consensus 87 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~ 166 (330)
T PRK09473 87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGM 166 (330)
T ss_pred CHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHH
Confidence 01134554421 1112221 122233221 112234456644
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1094 LSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1094 ~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
.++++.+.+++.+|+|||+|||++|.|..-...+ ..+|..+.++.+.++||+|||++++..+++ +|.+++.|.++..
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i-~~lL~~l~~~~g~til~iTHdl~~~~~~~D--ri~vm~~G~ive~ 243 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQI-MTLLNELKREFNTAIIMITHDLGVVAGICD--KVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHHHcCCEEEEEECCHHHHHHhCC--EEEEEECCEEEEE
Confidence 4567788888999999999999888877755544 466777766668999999999999998888 9999999999987
Q ss_pred CC
Q 000778 1174 GV 1175 (1288)
Q Consensus 1174 g~ 1175 (1288)
|.
T Consensus 244 g~ 245 (330)
T PRK09473 244 GN 245 (330)
T ss_pred CC
Confidence 64
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-15 Score=179.25 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=112.6
Q ss_pred ccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh------------------------hcCcccccccc---ccchH
Q 000778 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA------------------------QVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1018 di~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila------------------------q~G~~vPa~~~---~l~~~ 1070 (1288)
|++|++ .+|++++|+||||||||||||+|+|+.-.. +.-.|+|+... .+.+.
T Consensus 16 ~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 94 (352)
T PRK11144 16 TVNLTL-PAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVR 94 (352)
T ss_pred EEEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHH
Confidence 789998 789999999999999999999999864110 01123444321 11222
Q ss_pred ---------------HHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 000778 1071 ---------------DRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1071 ---------------d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~ 1134 (1288)
+.++..+|..+.+.....+++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +.+|..
T Consensus 95 enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l-~~~L~~ 173 (352)
T PRK11144 95 GNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREL-LPYLER 173 (352)
T ss_pred HHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH-HHHHHH
Confidence 223445555555555556676 455678888889999999999999888888765544 456666
Q ss_pred HHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1135 FVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1135 l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.++.+.++|++||+++.+..+++ ++.+++.|.++..|.
T Consensus 174 l~~~~g~tii~vTHd~~~~~~~~d--~i~~l~~G~i~~~g~ 212 (352)
T PRK11144 174 LAREINIPILYVSHSLDEILRLAD--RVVVLEQGKVKAFGP 212 (352)
T ss_pred HHHhcCCeEEEEecCHHHHHHhCC--EEEEEeCCEEEEecC
Confidence 766558899999999999999898 899999999887654
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-15 Score=172.73 Aligned_cols=156 Identities=20% Similarity=0.168 Sum_probs=109.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------hhcCccccccccc-----cch-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------AQVGADVPAEIFE-----ISP- 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------aq~G~~vPa~~~~-----l~~- 1069 (1288)
..+.+|++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+.... ..+
T Consensus 20 ~~il~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~ 98 (272)
T PRK15056 20 HTALRDASFTV-PGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVE 98 (272)
T ss_pred cEEEEeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchh
Confidence 46889999999 78999999999999999999999986411 0112345543210 000
Q ss_pred ------------------------HHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1070 ------------------------VDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1070 ------------------------~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
+..++.++|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+...
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~ 178 (272)
T PRK15056 99 DVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178 (272)
T ss_pred hheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 1123344455444444455666 455667788888999999999999999888866
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..+ ..+|..+.++ |+++|++||+++.+..+++ +++++ .|.++..|
T Consensus 179 ~~l-~~~L~~~~~~-g~tviivsH~~~~~~~~~d--~v~~~-~G~i~~~g 223 (272)
T PRK15056 179 ARI-ISLLRELRDE-GKTMLVSTHNLGSVTEFCD--YTVMV-KGTVLASG 223 (272)
T ss_pred HHH-HHHHHHHHhC-CCEEEEEeCCHHHHHHhCC--EEEEE-CCEEEeec
Confidence 655 4666667554 7899999999999888888 56555 56665544
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-15 Score=171.74 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=108.3
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC--------ccccccc---cccchHHHH-------
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG--------ADVPAEI---FEISPVDRI------- 1073 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G--------~~vPa~~---~~l~~~d~i------- 1073 (1288)
...+.++++|.+ .+|++++|+||||+||||||++|+|+... ..| .+++... ..+++.+.+
T Consensus 36 ~~~il~~is~~i-~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~ 113 (264)
T PRK13546 36 TFFALDDISLKA-YEGDVIGLVGINGSGKSTLSNIIGGSLSP-TVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCM 113 (264)
T ss_pred ceEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHc
Confidence 346889999999 78999999999999999999999996532 112 1111111 112222222
Q ss_pred --------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc
Q 000778 1074 --------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHK 1138 (1288)
Q Consensus 1074 --------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~ 1138 (1288)
+..++..+.+.....+++ +++++++.+.+++.+|++||||||++|.|+.....+ ..++..+.+
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l-~~~L~~~~~- 191 (264)
T PRK13546 114 GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKC-LDKIYEFKE- 191 (264)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHH-HHHHHHHHH-
Confidence 222233333334445566 566677888888999999999999888887754443 455666654
Q ss_pred cCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1139 VQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1139 ~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
.++++|++||+.+.+..+++ +|..++.|.++..
T Consensus 192 ~g~tiIiisH~~~~i~~~~d--~i~~l~~G~i~~~ 224 (264)
T PRK13546 192 QNKTIFFVSHNLGQVRQFCT--KIAWIEGGKLKDY 224 (264)
T ss_pred CCCEEEEEcCCHHHHHHHcC--EEEEEECCEEEEe
Confidence 48899999999999988888 7888887766543
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-15 Score=188.14 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=114.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhc-Ccccccccc---ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQV-GADVPAEIF---EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~-G~~vPa~~~---~l~ 1068 (1288)
..++++++|.+ .+|++++|+||||||||||||+|+|+... ... -.|+|+... .+.
T Consensus 24 ~~il~~vsl~i-~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 102 (510)
T PRK15439 24 VEVLKGIDFTL-HAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLS 102 (510)
T ss_pred ceeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCc
Confidence 46889999999 78999999999999999999999986411 001 124554321 112
Q ss_pred hHHH-----------------HHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHH
Q 000778 1069 PVDR-----------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAES 1130 (1288)
Q Consensus 1069 ~~d~-----------------i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~a 1130 (1288)
+.+. ++..+|..+......+++|+ +.++++.+.+++.+|++||||||++|.|+.....+ ..
T Consensus 103 v~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l-~~ 181 (510)
T PRK15439 103 VKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERL-FS 181 (510)
T ss_pred HHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH-HH
Confidence 2222 23344444444445566774 55567777788999999999999888888865544 46
Q ss_pred HHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1131 VLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1131 ile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+|..+.++ |.++|++||+.+++..+++ +|.+++.|.++..|.
T Consensus 182 ~l~~~~~~-g~tiiivtHd~~~~~~~~d--~i~~l~~G~i~~~g~ 223 (510)
T PRK15439 182 RIRELLAQ-GVGIVFISHKLPEIRQLAD--RISVMRDGTIALSGK 223 (510)
T ss_pred HHHHHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEecC
Confidence 67777654 8899999999999998888 899999998876654
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-15 Score=169.94 Aligned_cols=157 Identities=15% Similarity=0.077 Sum_probs=110.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhc-----------------------Ccccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQV-----------------------GADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~-----------------------G~~vPa~~~ 1065 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+... ... -.|+|+...
T Consensus 33 ~~il~~vsl~i-~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 111 (267)
T PRK14237 33 KEAIKGIDMQF-EKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN 111 (267)
T ss_pred eeeEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc
Confidence 46899999999 78999999999999999999999997521 011 134444321
Q ss_pred c--cchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 E--ISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~--l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
. .++.+.+. ..++.. +.+......++ ++.++++.+.+++.+|+++|||||+
T Consensus 112 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt 191 (267)
T PRK14237 112 PFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPA 191 (267)
T ss_pred cccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1 12222221 112211 11223344566 5566778888889999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+|.|+.....+ ..++..+. + +.++|++||+++.+..+++ ++.+++.|.++..|.
T Consensus 192 ~~LD~~~~~~l-~~~l~~~~-~-~~tiii~tH~~~~~~~~~d--~i~~l~~G~i~~~g~ 245 (267)
T PRK14237 192 SALDPISTMQL-EETMFELK-K-NYTIIIVTHNMQQAARASD--YTAFFYLGDLIEYDK 245 (267)
T ss_pred ccCCHHHHHHH-HHHHHHHh-c-CCEEEEEecCHHHHHHhcC--EEEEEECCEEEEeCC
Confidence 99988765544 45666664 3 6799999999999988888 899999998877653
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-15 Score=168.37 Aligned_cols=170 Identities=19% Similarity=0.145 Sum_probs=115.8
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hcC----------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QVG---------- 1057 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~G---------- 1057 (1288)
+.|.+++..+.+- +..+.++++|.+ .+|++++|+||||+|||||||+|+|+.-.. ..|
T Consensus 6 ~~l~~~~l~~~~~-------~~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 6 AIIETENLNLFYT-------DFKALNNINIKI-LKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred ceEEEeeeEEEeC-------CceeecceeeEE-cCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 3567776654331 235889999999 789999999999999999999999865320 011
Q ss_pred -------------cccccccc--ccchHHHHH----------------------HhcCc----hhhHhhcccchH-HHHH
Q 000778 1058 -------------ADVPAEIF--EISPVDRIF----------------------VRMGA----KDHIMAGQSTFL-TELS 1095 (1288)
Q Consensus 1058 -------------~~vPa~~~--~l~~~d~i~----------------------~~ig~----~d~i~~~~Stf~-~e~~ 1095 (1288)
+|+|+... ..++.+.+. ..++. .+........++ ++.+
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 78 SNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQ 157 (254)
T ss_pred cccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHH
Confidence 23443321 123333321 11111 011122234455 4556
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1096 ~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+++.+.+++.+|+|||||||++|.|+.....+. .++..+. + ++++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~-~-~~tvii~sH~~~~~~~~~d--~i~~l~~G~i~~~g 231 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIE-ELIINLK-E-SYTIIIVTHNMQQAGRISD--RTAFFLNGCIEEES 231 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHh-c-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 677888889999999999999998888665544 5666664 3 6899999999999988888 88899888887665
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=187.73 Aligned_cols=158 Identities=13% Similarity=0.117 Sum_probs=113.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------h-hcCccccccc---cccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------A-QVGADVPAEI---FEIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------a-q~G~~vPa~~---~~l~ 1068 (1288)
..+.+|++|++ .+|++++|+||||||||||||+|+|+.-. . +.-.|||+.. ..+.
T Consensus 18 ~~il~~vs~~i-~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t 96 (510)
T PRK09700 18 VHALKSVNLTV-YPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELT 96 (510)
T ss_pred eEEeeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCc
Confidence 46889999999 78999999999999999999999986411 1 1123455432 1122
Q ss_pred hHHH----------------------------HHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1069 PVDR----------------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1069 ~~d~----------------------------i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
+.+. ++..+|..+......+++|+ +.++++.+.+++.+|++||||||++|.
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~L 176 (510)
T PRK09700 97 VLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176 (510)
T ss_pred HHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 2222 22333433333344566664 555677777889999999999998888
Q ss_pred ChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1120 s~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|+.....+ ..++..+.++ |.++|++||+.+++..+++ +|.+++.|.++..|.
T Consensus 177 D~~~~~~l-~~~l~~l~~~-g~tiiivsHd~~~~~~~~d--~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 177 TNKEVDYL-FLIMNQLRKE-GTAIVYISHKLAEIRRICD--RYTVMKDGSSVCSGM 228 (510)
T ss_pred CHHHHHHH-HHHHHHHHhC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEeeecc
Confidence 88755544 4677777654 8899999999999998888 888998888876543
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-15 Score=160.80 Aligned_cols=147 Identities=19% Similarity=0.140 Sum_probs=101.3
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccc-cccc---------cccchHH---HHHHhcCch
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV-PAEI---------FEISPVD---RIFVRMGAK 1080 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~v-Pa~~---------~~l~~~d---~i~~~ig~~ 1080 (1288)
.+..+++|++ .+|++++|+||||+|||||||+|+|+.- ...|... .... ..++++. .++. ....
T Consensus 16 ~~l~~i~~~i-~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 92 (178)
T cd03247 16 QVLKNLSLEL-KQGEKIALLGRSGSGKSTLLQLLTGDLK-PQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLR 92 (178)
T ss_pred cceEEEEEEE-cCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHH
Confidence 5788999999 7899999999999999999999998642 2223211 0000 0011110 1121 2334
Q ss_pred hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCC
Q 000778 1081 DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKD 1159 (1288)
Q Consensus 1081 d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~ 1159 (1288)
+++ ...++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +.++..+. + ++++|++||+++++. .++
T Consensus 93 ~~i---~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l-~~~l~~~~-~-~~tii~~sh~~~~~~-~~d- 164 (178)
T cd03247 93 NNL---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL-LSLIFEVL-K-DKTLIWITHHLTGIE-HMD- 164 (178)
T ss_pred Hhh---cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHH-HHHHHHHc-C-CCEEEEEecCHHHHH-hCC-
Confidence 444 33444 566778888889999999999999888888755544 45666663 3 789999999999886 466
Q ss_pred CceEEeeeEEEEe
Q 000778 1160 PRVSLCHMACQVG 1172 (1288)
Q Consensus 1160 ~~v~~~~~~~~~~ 1172 (1288)
++..++.|.++.
T Consensus 165 -~~~~l~~g~i~~ 176 (178)
T cd03247 165 -KILFLENGKIIM 176 (178)
T ss_pred -EEEEEECCEEEe
Confidence 888888877654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=165.16 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=104.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccccc--cchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIFE--ISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~~--l~~~ 1070 (1288)
..+.++++|.+ .+|++++|+||||+||||||++|+|+... .....|+|+.... ..+.
T Consensus 17 ~~~l~~i~~~i-~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 95 (220)
T cd03245 17 IPALDNVSLTI-RAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLR 95 (220)
T ss_pred cccccceEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHH
Confidence 35889999999 78999999999999999999999986411 1112345544211 1222
Q ss_pred HH---------------HHHhcCchhhHhhc-----------ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DR---------------IFVRMGAKDHIMAG-----------QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~---------------i~~~ig~~d~i~~~-----------~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+. ++..++..+.+... ...++ ++.++++.+.+++.+|+|+|||||++|.|+..
T Consensus 96 e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~ 175 (220)
T cd03245 96 DNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNS 175 (220)
T ss_pred HHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 22 22233333322221 13566 45566777788899999999999988888886
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
...+. .++..+.+ ++++|++||++++. .+++ ++..++.|.++.
T Consensus 176 ~~~l~-~~l~~~~~--~~tii~~sH~~~~~-~~~d--~v~~l~~g~i~~ 218 (220)
T cd03245 176 EERLK-ERLRQLLG--DKTLIIITHRPSLL-DLVD--RIIVMDSGRIVA 218 (220)
T ss_pred HHHHH-HHHHHhcC--CCEEEEEeCCHHHH-HhCC--EEEEEeCCeEee
Confidence 66554 55555643 37999999999986 5676 888888776653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=174.18 Aligned_cols=178 Identities=13% Similarity=0.074 Sum_probs=121.6
Q ss_pred CCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------
Q 000778 991 EPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------- 1053 (1288)
Q Consensus 991 ~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------- 1053 (1288)
.+.|.+++...-+-.. ...+..++++++|.+ .+|++++|+||||||||||||+|+|+...
T Consensus 19 ~~~l~~~nl~~~y~~~--~~~~~~~L~~vsl~i-~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 19 DIILRVKNLYCVFDEK--QENELVALNNISYTF-EKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred CceEEEEeEEEEeCCC--CcccccceeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccc
Confidence 3567777765433110 001236899999999 78999999999999999999999985311
Q ss_pred -------------------hhcCccccccc----cccchHHH---------------------HHHhcCch-hhHhhccc
Q 000778 1054 -------------------AQVGADVPAEI----FEISPVDR---------------------IFVRMGAK-DHIMAGQS 1088 (1288)
Q Consensus 1054 -------------------aq~G~~vPa~~----~~l~~~d~---------------------i~~~ig~~-d~i~~~~S 1088 (1288)
.+.-.+|++.. ...++.+. ++..+|.. +.......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 00112444432 01122222 22233332 22333344
Q ss_pred chH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1089 TFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1089 tf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
+++ ++.++++.+.+++.+|++||||||++|.|+.....+. .++..+.++ ++|+|++||+++.+..+++ +|.+++.
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~-~~L~~l~~~-g~TiiivtHd~~~~~~~ad--ri~vl~~ 251 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMM-QLILDAKAN-NKTVFVITHTMEHVLEVAD--EVIVMDK 251 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHC-CCEEEEEecCHHHHHHhCC--EEEEEEC
Confidence 565 5666788888899999999999998888888665544 666666554 8899999999999888888 9999999
Q ss_pred EEEEecCC
Q 000778 1168 ACQVGNGV 1175 (1288)
Q Consensus 1168 ~~~~~~g~ 1175 (1288)
|.++..|.
T Consensus 252 G~i~~~g~ 259 (320)
T PRK13631 252 GKILKTGT 259 (320)
T ss_pred CEEEEeCC
Confidence 99887663
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-15 Score=166.93 Aligned_cols=156 Identities=15% Similarity=0.158 Sum_probs=111.0
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh------------------hcCccccccccc---cchHHH-
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA------------------QVGADVPAEIFE---ISPVDR- 1072 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila------------------q~G~~vPa~~~~---l~~~d~- 1072 (1288)
+.++++|++ .+|++++|+||||+|||||||+|+|+.-.. +.-.++|+.... +.+.+.
T Consensus 14 ~l~~is~~i-~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 92 (235)
T cd03299 14 KLKNVSLEV-ERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI 92 (235)
T ss_pred eeeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence 688999998 789999999999999999999999853110 011234433211 111111
Q ss_pred --------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHH
Q 000778 1073 --------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1073 --------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ai 1131 (1288)
++..+|....+.....+++ ++.++++.+.+++.+|+++|||||++|.|+..... .+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~-l~~~ 171 (235)
T cd03299 93 AYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEK-LREE 171 (235)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHH-HHHH
Confidence 2233444433444445566 56667888888999999999999988888885554 4566
Q ss_pred HHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1132 le~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+..+..+.++++|++||+++.+..+++ ++..++.|.++..+
T Consensus 172 l~~~~~~~~~tili~tH~~~~~~~~~d--~i~~l~~G~i~~~~ 212 (235)
T cd03299 172 LKKIRKEFGVTVLHVTHDFEEAWALAD--KVAIMLNGKLIQVG 212 (235)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCC--EEEEEECCEEEEec
Confidence 777765558999999999999888888 88888888776554
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4e-15 Score=167.46 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=108.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--HHh--hcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--ILA--QVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--ila--q~G-----------------------~~vPa~~~ 1065 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+. +.. ..| .|+|+...
T Consensus 16 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEI-EEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEE-eCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 35889999999 789999999999999999999998752 110 012 33443321
Q ss_pred c--cchHHHH----------------------HHhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 E--ISPVDRI----------------------FVRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~--l~~~d~i----------------------~~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
. ..+.+.+ +..++..+ .+......++ ++.++++.+.+++.+|+++|||||+
T Consensus 95 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 174 (250)
T PRK14245 95 PFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 1222222 11222211 1122223455 5666788888899999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+|.|+.....+ ..++..+. + ++++|++||+++.+..+++ ++.+++.|.++..+.
T Consensus 175 ~~LD~~~~~~l-~~~l~~~~-~-~~tiiivtH~~~~~~~~~d--~v~~l~~G~~~~~~~ 228 (250)
T PRK14245 175 SALDPISTAKV-EELIHELK-K-DYTIVIVTHNMQQAARVSD--KTAFFYMGEMVEYDD 228 (250)
T ss_pred ccCCHHHHHHH-HHHHHHHh-c-CCeEEEEeCCHHHHHhhCC--EEEEEECCEEEEECC
Confidence 99888865544 46666663 3 6899999999999988888 899999998877653
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-15 Score=164.80 Aligned_cols=162 Identities=17% Similarity=0.121 Sum_probs=109.1
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------h
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------A 1054 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------a 1054 (1288)
+.|.+++..+-+ .+..+.++++|.+ .+|++++|+||||+|||||||+|+|+.-. .
T Consensus 10 ~~l~~~~l~~~~-------~~~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSR-------NEEPVFGPLDFHV-DAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRS 81 (214)
T ss_pred ceEEEeeEEEec-------CCceeeecceEEE-CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhh
Confidence 446666554322 1246899999999 78999999999999999999999986411 1
Q ss_pred hcCcccccccc---ccchHHHH------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEE
Q 000778 1055 QVGADVPAEIF---EISPVDRI------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVL 1112 (1288)
Q Consensus 1055 q~G~~vPa~~~---~l~~~d~i------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLL 1112 (1288)
....|+|+... .+++.+.+ +..++..+........++ ++.++++.+..++.+|+++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLL 161 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11224443321 12233322 222333322233334455 566678888888999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEe
Q 000778 1113 DELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLC 1165 (1288)
Q Consensus 1113 DEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~ 1165 (1288)
|||++|.|+..... ...++..+.++ ++++|++||+++.+..+++ ++..+
T Consensus 162 DEPt~~LD~~~~~~-l~~~l~~~~~~-~~tiii~sH~~~~~~~~~~--~i~~l 210 (214)
T PRK13543 162 DEPYANLDLEGITL-VNRMISAHLRG-GGAALVTTHGAYAAPPVRT--RMLTL 210 (214)
T ss_pred eCCcccCCHHHHHH-HHHHHHHHHhC-CCEEEEEecChhhhhhhcc--eEEEE
Confidence 99988888875554 44677766554 7899999999999988887 55544
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-15 Score=159.75 Aligned_cols=140 Identities=18% Similarity=0.164 Sum_probs=96.5
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccc-cccc----------cccchH---HHHHHhcCc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV-PAEI----------FEISPV---DRIFVRMGA 1079 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~v-Pa~~----------~~l~~~---d~i~~~ig~ 1079 (1288)
.+.++++|.+ .+|++++|+||||+|||||||+|+|+.. ...|... .... ..++++ ..+|. ...
T Consensus 16 ~~l~~i~~~i-~~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~ 92 (171)
T cd03228 16 PVLKDVSLTI-KPGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTI 92 (171)
T ss_pred ccccceEEEE-cCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chH
Confidence 5788999998 7899999999999999999999998643 2223211 0000 011111 01221 233
Q ss_pred hhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1080 KDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1080 ~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
.+++ ++ ++.++++.+.+++.+|+++|||||++|.|+.....+ ..++..+. + ++++|++||+++.+.. ++
T Consensus 93 ~e~l------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l-~~~l~~~~-~-~~tii~~sh~~~~~~~-~d 162 (171)
T cd03228 93 RENI------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALI-LEALRALA-K-GKTVIVIAHRLSTIRD-AD 162 (171)
T ss_pred HHHh------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH-HHHHHHhc-C-CCEEEEEecCHHHHHh-CC
Confidence 3443 44 566677888888999999999999999998765544 45666664 3 6899999999999876 76
Q ss_pred CCceEEeeeE
Q 000778 1159 DPRVSLCHMA 1168 (1288)
Q Consensus 1159 ~~~v~~~~~~ 1168 (1288)
++..++.|
T Consensus 163 --~~~~l~~g 170 (171)
T cd03228 163 --RIIVLDDG 170 (171)
T ss_pred --EEEEEcCC
Confidence 66666543
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-15 Score=167.85 Aligned_cols=171 Identities=14% Similarity=0.139 Sum_probs=114.9
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-h---hcC----------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-A---QVG---------- 1057 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-a---q~G---------- 1057 (1288)
+.|.+++...-+ .+..++++++|.+ .+|++++|+||||+||||||++|+|+.-. . ..|
T Consensus 11 ~~l~i~~l~~~~-------~~~~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 11 EVYQINGMNLWY-------GQHHALKNINLSI-PENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82 (259)
T ss_pred ceEEEeeEEEEE-------CCeeeEEeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence 346666654322 1236889999999 78999999999999999999999986431 0 112
Q ss_pred -------------ccccccccc--cchHHHH----------------------HHhcCchh----hHhhcccchH-HHHH
Q 000778 1058 -------------ADVPAEIFE--ISPVDRI----------------------FVRMGAKD----HIMAGQSTFL-TELS 1095 (1288)
Q Consensus 1058 -------------~~vPa~~~~--l~~~d~i----------------------~~~ig~~d----~i~~~~Stf~-~e~~ 1095 (1288)
.|+|+.... ..+.+.+ +..++..+ .+......++ ++.+
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 83 KGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred ccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 233332110 1122221 11122211 1122234455 5666
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1096 ~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+++.+..++.+|+|+|||||++|.|+.....+ +.++..+. + ++++|++||+.+.+..+++ ++.+++.|.++..|.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~-~-~~tiiivtH~~~~~~~~~d--~i~~l~~G~i~~~g~ 237 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKI-EELILKLK-E-KYTIVIVTHNMQQAARVSD--QTAFFYMGELVECND 237 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHh-c-CCEEEEEEcCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 77888888999999999999999988765544 46666664 3 6899999999999988888 888999888877653
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-15 Score=187.20 Aligned_cols=157 Identities=12% Similarity=0.144 Sum_probs=113.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-hhc----------------------Cccccccc---cc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-AQV----------------------GADVPAEI---FE 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-aq~----------------------G~~vPa~~---~~ 1066 (1288)
..++++++|++ .+|++++|+||||||||||||+|+|+... ... -.|||+.. ..
T Consensus 18 ~~il~~isl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 18 VKALDNVSLKV-RAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eEeecceeEEE-eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 46899999999 78999999999999999999999986532 011 12444332 11
Q ss_pred cchHHH------------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1067 ISPVDR------------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1067 l~~~d~------------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
+++.+. ++.++|..+......+++| ++.++++.+.+++.+|+++|||||++|.|+
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~ 176 (506)
T PRK13549 97 LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE 176 (506)
T ss_pred CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 222222 2233333333333445666 455667888888999999999999888888
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.....+ ..++..+.++ +.++|++||+.+.+..+++ +|.+++.|.++..+
T Consensus 177 ~~~~~l-~~~l~~l~~~-~~tvi~~tH~~~~~~~~~d--~v~~l~~G~i~~~~ 225 (506)
T PRK13549 177 SETAVL-LDIIRDLKAH-GIACIYISHKLNEVKAISD--TICVIRDGRHIGTR 225 (506)
T ss_pred HHHHHH-HHHHHHHHHC-CCEEEEEeCcHHHHHHhcC--EEEEEECCEEeeec
Confidence 865554 4667777554 8899999999999998888 89999998887654
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-15 Score=168.25 Aligned_cols=172 Identities=19% Similarity=0.211 Sum_probs=114.7
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH-HHhhcC-------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-ILAQVG------------- 1057 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~-ilaq~G------------- 1057 (1288)
+.|.+++...-+ .+..++++++|++ .+|++++|+||||+|||||||+|+|+. +-...|
T Consensus 6 ~~l~~~~l~~~~-------~~~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T CHL00131 6 PILEIKNLHASV-------NENEILKGLNLSI-NKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE 77 (252)
T ss_pred ceEEEEeEEEEe-------CCEEeeecceeEE-cCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCC
Confidence 346666554322 1236899999999 789999999999999999999999962 111122
Q ss_pred ---------ccccccccc---cchH----------------------------HHHHHhcCchh-hHhhccc-chH-HHH
Q 000778 1058 ---------ADVPAEIFE---ISPV----------------------------DRIFVRMGAKD-HIMAGQS-TFL-TEL 1094 (1288)
Q Consensus 1058 ---------~~vPa~~~~---l~~~----------------------------d~i~~~ig~~d-~i~~~~S-tf~-~e~ 1094 (1288)
.++|+.... +... ..++..+|..+ .+..... .++ ++.
T Consensus 78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~ 157 (252)
T CHL00131 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEK 157 (252)
T ss_pred hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHH
Confidence 122222100 0111 11222333321 1222222 366 455
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhh-cCCCceEEeeeEEEEec
Q 000778 1095 SETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDY-KKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1095 ~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~-~~~~~v~~~~~~~~~~~ 1173 (1288)
++++.+.+++.+|+++|||||++|.|+.....+. .++..+.++ +.++|++||+++++... ++ ++.+++.|.++..
T Consensus 158 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~-g~tii~~tH~~~~~~~~~~d--~i~~l~~G~i~~~ 233 (252)
T CHL00131 158 KRNEILQMALLDSELAILDETDSGLDIDALKIIA-EGINKLMTS-ENSIILITHYQRLLDYIKPD--YVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCHHHHHhhhCC--EEEEEeCCEEEEe
Confidence 6777888889999999999998888888666554 566666553 78999999999998775 66 8888888988776
Q ss_pred CC
Q 000778 1174 GV 1175 (1288)
Q Consensus 1174 g~ 1175 (1288)
++
T Consensus 234 ~~ 235 (252)
T CHL00131 234 GD 235 (252)
T ss_pred cC
Confidence 54
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-15 Score=170.26 Aligned_cols=158 Identities=19% Similarity=0.214 Sum_probs=109.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----------------------------hcCccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----------------------------QVGADVPAEI 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----------------------------q~G~~vPa~~ 1064 (1288)
..++.+++|.+ .+|++++|+||||+|||||||+|+|+.-.. ....|+|+..
T Consensus 14 ~~il~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 14 RAILRDLSLRI-EPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred EeEEecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 46788999999 789999999999999999999999864221 1123444432
Q ss_pred ---cccchHHHH-------------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhC---------CC
Q 000778 1065 ---FEISPVDRI-------------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSA---------TR 1106 (1288)
Q Consensus 1065 ---~~l~~~d~i-------------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a---------~~ 1106 (1288)
..+.+.+.+ +..+|....+....++++ ++.++++.+..++ .+
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~ 172 (272)
T PRK13547 93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQP 172 (272)
T ss_pred CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCC
Confidence 112333332 122233222233345566 4555667777777 59
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1107 NSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1107 ~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|+++|||||++|.|+.....+. .++..+.++.+.++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 173 p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tviiisH~~~~~~~~~d--~i~~l~~G~i~~~g 237 (272)
T PRK13547 173 PRYLLLDEPTAALDLAHQHRLL-DTVRRLARDWNLGVLAIVHDPNLAARHAD--RIAMLADGAIVAHG 237 (272)
T ss_pred CCEEEEcCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCC--EEEEEECCeEEEec
Confidence 9999999998888888666544 56666655447899999999999988888 88888888776544
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-15 Score=181.11 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=112.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcc--------cc---ccccccchHH----------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD--------VP---AEIFEISPVD---------- 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~--------vP---a~~~~l~~~d---------- 1071 (1288)
..++++++|.+ .+|++++|+||||+|||||||+|+|+... ..|.. ++ .....+++.+
T Consensus 37 ~~IL~nVSfsI-~~GEivgIiGpNGSGKSTLLkiLaGLl~P-~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~ 114 (549)
T PRK13545 37 HYALNNISFEV-PEGEIVGIIGLNGSGKSTLSNLIAGVTMP-NKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMG 114 (549)
T ss_pred ceEEeeeEEEE-eCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcC
Confidence 46899999999 78999999999999999999999996421 22210 00 0001112222
Q ss_pred -----------HHHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcc
Q 000778 1072 -----------RIFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKV 1139 (1288)
Q Consensus 1072 -----------~i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~ 1139 (1288)
.++..++..+.+......+++ +.++++.+++++.+|++||||||++|.|+.....+. .+|..+.++
T Consensus 115 ~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~Ll-elL~el~~~- 192 (549)
T PRK13545 115 LTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCL-DKMNEFKEQ- 192 (549)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH-HHHHHHHhC-
Confidence 233445555555555667774 555677888889999999999998888887655544 556666544
Q ss_pred CcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1140 QCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1140 ~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|+++|++||+++.+..+++ ++.+++.|.++..|
T Consensus 193 G~TIIIVSHdl~~i~~l~D--rIivL~~GkIv~~G 225 (549)
T PRK13545 193 GKTIFFISHSLSQVKSFCT--KALWLHYGQVKEYG 225 (549)
T ss_pred CCEEEEEECCHHHHHHhCC--EEEEEECCEEEEEC
Confidence 8899999999999988888 88888888877655
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-15 Score=168.05 Aligned_cols=139 Identities=16% Similarity=0.140 Sum_probs=98.3
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHH--------hhcCcccccccc---ccchHH-----------------HHHHh
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVIL--------AQVGADVPAEIF---EISPVD-----------------RIFVR 1076 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------aq~G~~vPa~~~---~l~~~d-----------------~i~~~ 1076 (1288)
.+|++++|+||||+|||||||+|+|+... .+.-.|+|+... ..++.+ .++..
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~ 102 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKP 102 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHH
Confidence 46899999999999999999999986421 111134454321 112222 23344
Q ss_pred cCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1077 MGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1077 ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
++..+.+....+.++ +|.++++.+.+++.+|+++|||||++|.|+.....+. .++.++.++.++++|++||+++++..
T Consensus 103 l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 103 LQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS-KVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 555544445556677 5666788888899999999999998888887665544 56666665557899999999999998
Q ss_pred hcCCCceEEee
Q 000778 1156 YKKDPRVSLCH 1166 (1288)
Q Consensus 1156 ~~~~~~v~~~~ 1166 (1288)
+++ +|.+++
T Consensus 182 ~~d--~i~~l~ 190 (246)
T cd03237 182 LAD--RLIVFE 190 (246)
T ss_pred hCC--EEEEEc
Confidence 888 665553
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-15 Score=185.69 Aligned_cols=157 Identities=10% Similarity=0.088 Sum_probs=112.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCccccccc---cccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEI---FEIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~---~~l~ 1068 (1288)
..+++|++|++ .+|++++|+||||||||||||+|+|+... .+.-.|+|+.. ..++
T Consensus 17 ~~~l~~is~~i-~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK10762 17 VKALSGAALNV-YPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLT 95 (501)
T ss_pred eEEeeeeeEEE-cCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCc
Confidence 46889999999 78999999999999999999999986411 01112444432 1112
Q ss_pred hHHH-------------------------HHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1069 PVDR-------------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1069 ~~d~-------------------------i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
+.+. ++.++|..+......+++|+ +.++++.+.+++.+|+|||||||++|.|+.
T Consensus 96 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 175 (501)
T PRK10762 96 IAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175 (501)
T ss_pred HHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHH
Confidence 2222 23333443333334456664 555677777889999999999998888887
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
....+ +.++..+.+. +.++|++||+.+++..+++ +|.+++.|.++..+
T Consensus 176 ~~~~l-~~~l~~l~~~-~~tvii~sHd~~~~~~~~d--~i~~l~~G~i~~~~ 223 (501)
T PRK10762 176 ETESL-FRVIRELKSQ-GRGIVYISHRLKEIFEICD--DVTVFRDGQFIAER 223 (501)
T ss_pred HHHHH-HHHHHHHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEeCCEEEEec
Confidence 65544 4667777654 8899999999999999998 89999988887554
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-15 Score=169.27 Aligned_cols=156 Identities=15% Similarity=0.166 Sum_probs=109.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G-----------------------~~vPa~~~ 1065 (1288)
..++++++|.+ .+|++++|+||||+|||||||+|+|+... ...| .|+|+...
T Consensus 32 ~~il~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 110 (267)
T PRK14235 32 KQALFDVDLDI-PEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110 (267)
T ss_pred EEEEEEEEEEE-cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC
Confidence 46899999999 78999999999999999999999987531 1112 23343321
Q ss_pred c--cchHHHH-----------------------HHhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1066 E--ISPVDRI-----------------------FVRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1066 ~--l~~~d~i-----------------------~~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
. .++.+.+ +..+|..+ .+.....+++ ++.++++.+.+++.+|++||||||
T Consensus 111 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 190 (267)
T PRK14235 111 PFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEP 190 (267)
T ss_pred CCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 0 1222222 12222211 1122334555 566678888889999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
++|.|+.....+ ..+|..+.+ +.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 191 t~~LD~~~~~~l-~~~L~~l~~--~~tiiivtH~~~~~~~~~d--~v~~l~~G~i~~~g 244 (267)
T PRK14235 191 CSALDPIATAKV-EELIDELRQ--NYTIVIVTHSMQQAARVSQ--RTAFFHLGNLVEVG 244 (267)
T ss_pred CcCCCHHHHHHH-HHHHHHHhc--CCeEEEEEcCHHHHHhhCC--EEEEEECCEEEEeC
Confidence 999888865544 466666643 5799999999999988888 88888888877655
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-15 Score=165.19 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=107.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--hhcC------------------cccccccc---ccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--AQVG------------------ADVPAEIF---EISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--aq~G------------------~~vPa~~~---~l~~ 1069 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+... ...| .++|+... .+++
T Consensus 20 ~~~l~~vsl~i-~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv 98 (226)
T cd03234 20 ARILNDVSLHV-ESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTV 98 (226)
T ss_pred cccccCceEEE-cCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcH
Confidence 46889999998 78999999999999999999999987540 1111 24444321 1233
Q ss_pred HHHHH-------------------------HhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1070 VDRIF-------------------------VRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1070 ~d~i~-------------------------~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+.+. ..++..+........++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 99 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~ 178 (226)
T cd03234 99 RETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT 178 (226)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHH
Confidence 33221 11111111112234455 56667888888899999999999999999876
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCc-hhhhhhcCCCceEEeeeEEEEec
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYH-RLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~-~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
...+ ..++..+.+. +.++|++||+. +.+..+++ ++.+++.|.++..
T Consensus 179 ~~~~-~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d--~i~~l~~G~i~~~ 225 (226)
T cd03234 179 ALNL-VSTLSQLARR-NRIVILTIHQPRSDLFRLFD--RILLLSSGEIVYS 225 (226)
T ss_pred HHHH-HHHHHHHHHC-CCEEEEEecCCCHHHHHhCC--EEEEEeCCEEEec
Confidence 5544 4566666554 78999999998 57778888 8888888877653
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-15 Score=166.04 Aligned_cols=153 Identities=14% Similarity=0.055 Sum_probs=101.9
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccc-------ccc-----ccccchHHHHH--Hh----
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV-------PAE-----IFEISPVDRIF--VR---- 1076 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~v-------Pa~-----~~~l~~~d~i~--~~---- 1076 (1288)
+.+|++|.+ .+|++++|+||||||||||||+|+|+.. ...|... +.. ...+++.+.+. ..
T Consensus 2 vl~~vs~~i-~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~ 79 (213)
T PRK15177 2 VLDKTDFVM-GYHEHIGILAAPGSGKTTLTRLLCGLDA-PDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGL 79 (213)
T ss_pred eeeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCC
Confidence 678999999 7899999999999999999999998652 2223211 100 01122222221 11
Q ss_pred ------------cCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEE
Q 000778 1077 ------------MGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRG 1143 (1288)
Q Consensus 1077 ------------ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~v 1143 (1288)
++..+......+.++ ++.++++.+++++.+|+++|||||+.+.++.....+...+.+.+ + +.++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~-~--~~~i 156 (213)
T PRK15177 80 DGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQL-Q--QKGL 156 (213)
T ss_pred CHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHh-h--CCcE
Confidence 111111122234455 44556778888899999999999988887776555443444443 2 3568
Q ss_pred EEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1144 LFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1144 l~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|++||+++.+..+++ ++.+++.|.++..+
T Consensus 157 i~vsH~~~~~~~~~d--~i~~l~~G~i~~~~ 185 (213)
T PRK15177 157 IVLTHNPRLIKEHCH--AFGVLLHGKITMCE 185 (213)
T ss_pred EEEECCHHHHHHhcC--eeEEEECCeEEEeC
Confidence 999999999988888 88888888776544
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-15 Score=169.85 Aligned_cols=156 Identities=17% Similarity=0.105 Sum_probs=107.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-h---hcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-A---QVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-a---q~G-----------------------~~vPa~~~ 1065 (1288)
..++++++|.+ .+|++++|+||||+||||||++|+|+.-. . ..| .|+|+...
T Consensus 33 ~~~l~~vs~~i-~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~ 111 (274)
T PRK14265 33 FLALVDVHLKI-PAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111 (274)
T ss_pred eEEEeeeeeEE-cCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc
Confidence 46899999999 78999999999999999999999986421 0 111 24444321
Q ss_pred c--cchHHHHH--------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1066 E--ISPVDRIF--------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1066 ~--l~~~d~i~--------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
. ..+.+.+. ..++.. +.+......++ ++.++++.+.+++.+|+|||||||++|
T Consensus 112 l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~ 191 (274)
T PRK14265 112 PFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSA 191 (274)
T ss_pred cccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence 1 12223221 111111 11122334455 566778888889999999999999888
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee---------eEEEEecC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH---------MACQVGNG 1174 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~---------~~~~~~~g 1174 (1288)
.|+.....+. .+|..+. + ++++|++||+.+.+..+++ ++.+++ .|.++..|
T Consensus 192 LD~~~~~~l~-~~L~~~~-~-~~tiii~sH~~~~~~~~~d--~i~~l~~~~~~~~~~~G~~~~~g 251 (274)
T PRK14265 192 LDPISTRQVE-ELCLELK-E-QYTIIMVTHNMQQASRVAD--WTAFFNTEIDEYGKRRGKLVEFS 251 (274)
T ss_pred CCHHHHHHHH-HHHHHHh-c-CCEEEEEeCCHHHHHHhCC--EEEEEecccccccccCceEEEeC
Confidence 8887655443 5666664 3 5899999999999999888 888886 67766654
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-15 Score=186.52 Aligned_cols=155 Identities=15% Similarity=0.127 Sum_probs=111.2
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCccccccc------ccc
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEI------FEI 1067 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~------~~l 1067 (1288)
+.++++|.+ .+|++++|+||||||||||||+|+|+.-. ...-.|+|+.. ..+
T Consensus 278 ~l~~isl~i-~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~ 356 (510)
T PRK15439 278 GFRNISLEV-RAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA 356 (510)
T ss_pred CccceeEEE-cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC
Confidence 578999999 78999999999999999999999986310 01123555431 011
Q ss_pred chHH------------------------HHHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1068 SPVD------------------------RIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1068 ~~~d------------------------~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
++.+ .++.++|.. +......+.+| ++.++++.+.+++.+|+|||||||++|.|+
T Consensus 357 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~ 436 (510)
T PRK15439 357 PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV 436 (510)
T ss_pred cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcCh
Confidence 2222 223334443 33344455666 455667777888999999999999888888
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.....+. .++..+.++ |+++|++|||++++..+++ ++.+++.|.++..+
T Consensus 437 ~~~~~l~-~~l~~l~~~-g~tiIivsHd~~~i~~~~d--~i~~l~~G~i~~~~ 485 (510)
T PRK15439 437 SARNDIY-QLIRSIAAQ-NVAVLFISSDLEEIEQMAD--RVLVMHQGEISGAL 485 (510)
T ss_pred hHHHHHH-HHHHHHHhC-CCEEEEECCCHHHHHHhCC--EEEEEECCEEEEEE
Confidence 8666554 566777664 8899999999999999998 88888888776544
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-15 Score=166.84 Aligned_cols=156 Identities=17% Similarity=0.116 Sum_probs=107.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-Hh---hcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-LA---QVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-la---q~G-----------------------~~vPa~~~ 1065 (1288)
..+.++++|++ .+|++++|+||||+||||||++|+|+.. .. ..| .|+|+...
T Consensus 18 ~~~l~~~s~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 96 (252)
T PRK14239 18 KKALNSVSLDF-YPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96 (252)
T ss_pred eeeeeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence 46889999999 7899999999999999999999998631 11 012 23443321
Q ss_pred --ccchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 --EISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 --~l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
..++.+.+. .+++.. +.+......++ ++.++++.+.+++.+|+|+|||||+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 176 (252)
T PRK14239 97 PFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT 176 (252)
T ss_pred cCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 122333321 011110 11122234455 5566778888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ ..++..+.+ ++++|++||+++.+..+++ ++.+++.|.++..|
T Consensus 177 ~~LD~~~~~~l-~~~l~~~~~--~~tii~~sH~~~~~~~~~d--~i~~l~~G~i~~~g 229 (252)
T PRK14239 177 SALDPISAGKI-EETLLGLKD--DYTMLLVTRSMQQASRISD--RTGFFLDGDLIEYN 229 (252)
T ss_pred cccCHHHHHHH-HHHHHHHhh--CCeEEEEECCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 88888866554 466666643 5799999999999888888 89999988877655
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-15 Score=167.73 Aligned_cols=156 Identities=17% Similarity=0.127 Sum_probs=108.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--Hhhc---------------------Cccccccccc--c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--LAQV---------------------GADVPAEIFE--I 1067 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--laq~---------------------G~~vPa~~~~--l 1067 (1288)
..+++|++|.+ .+|++++|+||||+|||||||+|+|+.- .... -.|+|+.... .
T Consensus 15 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~ 93 (246)
T PRK14269 15 KQALFDINMQI-EQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVK 93 (246)
T ss_pred EeeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccc
Confidence 46789999999 7899999999999999999999998631 0111 1344443211 1
Q ss_pred chHHHH-----------------------HHhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1068 SPVDRI-----------------------FVRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1068 ~~~d~i-----------------------~~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
.+.+.+ +..++.. +.+......++ ++.++++.+.+++.+|+++|||||++|.
T Consensus 94 tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~L 173 (246)
T PRK14269 94 SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSAL 173 (246)
T ss_pred cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 222222 2233331 11222334455 5666788888889999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1120 s~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|+.....+ ..++..+. + ++++|++||+.+++..+++ ++.+++.|.++..+
T Consensus 174 D~~~~~~l-~~~l~~~~-~-~~tiii~tH~~~~~~~~~d--~i~~l~~G~i~~~g 223 (246)
T PRK14269 174 DPISSGVI-EELLKELS-H-NLSMIMVTHNMQQGKRVAD--YTAFFHLGELIEFG 223 (246)
T ss_pred CHHHHHHH-HHHHHHHh-C-CCEEEEEecCHHHHHhhCc--EEEEEECCEEEEEC
Confidence 88755444 45666664 3 7899999999999988888 88899988887654
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-15 Score=167.57 Aligned_cols=170 Identities=18% Similarity=0.162 Sum_probs=115.1
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC----------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG---------- 1057 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G---------- 1057 (1288)
..|.+++..+-+- +..+++|++|++ .+|++++|+||||+|||||||+|+|+.-. ...|
T Consensus 12 ~~l~~~~l~~~~~-------~~~il~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 12 SKIQVRNLNFYYG-------KFHALKNINLDI-AKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred ceEEEEEEEEEeC-------CeEEeeceeEEE-cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence 3466666654321 235889999999 78999999999999999999999987420 1112
Q ss_pred -------------cccccccc--ccchHHHH----------------------HHhcCch----hhHhhcccchH-HHHH
Q 000778 1058 -------------ADVPAEIF--EISPVDRI----------------------FVRMGAK----DHIMAGQSTFL-TELS 1095 (1288)
Q Consensus 1058 -------------~~vPa~~~--~l~~~d~i----------------------~~~ig~~----d~i~~~~Stf~-~e~~ 1095 (1288)
.|+|+... ..++.+.+ +..++.. +.+.....+++ ++.+
T Consensus 84 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 84 TPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred ccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence 23443321 11222222 1122211 11222334455 5666
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1096 ~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+++.+.+++.+|+++|||||++|.|+.....+ ..++..+. . +.++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~~~-~-~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~g 237 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRI-EELITELK-Q-DYTVVIVTHNMQQAARCSD--YTAFMYLGELIEFG 237 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHH-HHHHHHHh-c-CCeEEEEeCCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 78888888999999999999888888755544 45666664 3 6799999999999988888 88899888887655
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-15 Score=162.83 Aligned_cols=142 Identities=14% Similarity=0.127 Sum_probs=97.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc---
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF--- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~--- 1065 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+... .+...|+++...
T Consensus 11 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 11 KIILDDLNLTI-EKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred EEEEeceEEEE-eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence 35788999998 78999999999999999999999985411 011223333211
Q ss_pred ccchHH---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1066 EISPVD---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1066 ~l~~~d---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
..++.+ .++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~ 169 (206)
T TIGR03608 90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKN 169 (206)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHH
Confidence 112222 22333444333334445555 56667788888899999999999988888876
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
...+ ..++..+.+. +.++|++||+.++.. .++
T Consensus 170 ~~~l-~~~l~~~~~~-~~tii~~sh~~~~~~-~~d 201 (206)
T TIGR03608 170 RDEV-LDLLLELNDE-GKTIIIVTHDPEVAK-QAD 201 (206)
T ss_pred HHHH-HHHHHHHHhc-CCEEEEEeCCHHHHh-hcC
Confidence 5544 4666666554 789999999998764 455
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-15 Score=185.76 Aligned_cols=158 Identities=15% Similarity=0.100 Sum_probs=111.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-HhhcC----------------------------------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-LAQVG---------------------------------- 1057 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-laq~G---------------------------------- 1057 (1288)
..++++++|.+ .+|++++|+||||||||||||+|+|+.. ....|
T Consensus 13 ~~~l~~is~~i-~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 91 (520)
T TIGR03269 13 KEVLKNISFTI-EEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP 91 (520)
T ss_pred eEeeeceeEEE-cCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence 35789999999 7899999999999999999999999741 11111
Q ss_pred --------------------cccccc-c---cccchHHH---------------------HHHhcCchhhHhhcccchHH
Q 000778 1058 --------------------ADVPAE-I---FEISPVDR---------------------IFVRMGAKDHIMAGQSTFLT 1092 (1288)
Q Consensus 1058 --------------------~~vPa~-~---~~l~~~d~---------------------i~~~ig~~d~i~~~~Stf~~ 1092 (1288)
.++|+. . ..+.+.+. ++..+|..+.+....+++|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 171 (520)
T TIGR03269 92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSG 171 (520)
T ss_pred cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCH
Confidence 233332 1 11122222 23334443333444566774
Q ss_pred -HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEE
Q 000778 1093 -ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQV 1171 (1288)
Q Consensus 1093 -e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~ 1171 (1288)
|.++++.+.+++.+|++||||||++|.|+.....+. .+++.+.++.|.++|++||+.+++..+++ +|..++.|.++
T Consensus 172 Gq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviivtHd~~~~~~~~d--~i~~l~~G~i~ 248 (520)
T TIGR03269 172 GEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVH-NALEEAVKASGISMVLTSHWPEVIEDLSD--KAIWLENGEIK 248 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHhcC--EEEEEeCCEEe
Confidence 555677778889999999999998888887655443 66777765558899999999999988888 88888888776
Q ss_pred ecC
Q 000778 1172 GNG 1174 (1288)
Q Consensus 1172 ~~g 1174 (1288)
..|
T Consensus 249 ~~g 251 (520)
T TIGR03269 249 EEG 251 (520)
T ss_pred eec
Confidence 443
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-15 Score=170.29 Aligned_cols=157 Identities=17% Similarity=0.102 Sum_probs=111.4
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccc----cccch
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEI----FEISP 1069 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~----~~l~~ 1069 (1288)
.+.++++|.+ .+|++++|+||||+||||||++|+|+... .+...|+|+.. ....+
T Consensus 21 ~~l~~v~l~i-~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (277)
T PRK13642 21 NQLNGVSFSI-TKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATV 99 (277)
T ss_pred eeeeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCH
Confidence 4889999999 78999999999999999999999985411 11123455442 11233
Q ss_pred HHHH---------------------HHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1070 VDRI---------------------FVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1070 ~d~i---------------------~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.+.+ +..+|..+........+++ +.++++.+.+++.+|+++|||||++|.|+.....+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l 179 (277)
T PRK13642 100 EDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179 (277)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 3333 2222333333333445564 45567777788999999999999999998876655
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
. .++..+.++.|.++|++||+++.+. .++ ++.+++.|.++..+.
T Consensus 180 ~-~~l~~l~~~~g~tiil~sH~~~~~~-~~d--~i~~l~~G~i~~~g~ 223 (277)
T PRK13642 180 M-RVIHEIKEKYQLTVLSITHDLDEAA-SSD--RILVMKAGEIIKEAA 223 (277)
T ss_pred H-HHHHHHHHhcCCEEEEEeCCHHHHH-hCC--EEEEEECCEEEEeCC
Confidence 4 5666776555899999999999986 466 899999998876653
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-15 Score=160.76 Aligned_cols=156 Identities=19% Similarity=0.145 Sum_probs=118.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH---------------HhhcCccccccccc---------c-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---------------LAQVGADVPAEIFE---------I- 1067 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i---------------laq~G~~vPa~~~~---------l- 1067 (1288)
..+++||+|++ .+|+.++|+|+||||||||||.|+|+.. ++-.+.|-|....+ +
T Consensus 40 ~~aL~disf~i-~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 40 FWALKDISFEI-YKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred EEEecCceEEE-eCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 47899999999 8999999999999999999999999652 22222344433211 0
Q ss_pred -------chHHHHHHhcCchhhHhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH--HHHHHHHHHh
Q 000778 1068 -------SPVDRIFVRMGAKDHIMAGQSTFLTELS-ETALMLSSATRNSLVVLDELGRGTSTSDGQAI--AESVLEHFVH 1137 (1288)
Q Consensus 1068 -------~~~d~i~~~ig~~d~i~~~~Stf~~e~~-~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai--a~aile~l~~ 1137 (1288)
..++.|...-.+.+.+..+..+++..|. +++..++...+|+++||||. ++..|..-. +...++.+.+
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEv---lavGD~~F~~K~~~rl~e~~~ 195 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEV---LAVGDAAFQEKCLERLNELVE 195 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehh---hhcCCHHHHHHHHHHHHHHHH
Confidence 0133444444456788888999998886 68888888999999999999 666664322 3355666655
Q ss_pred ccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1138 KVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1138 ~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+ +.++|+|||+++.+..+|+ ++.+++.|.+...|+
T Consensus 196 ~-~~tiv~VSHd~~~I~~~Cd--~~i~l~~G~i~~~G~ 230 (249)
T COG1134 196 K-NKTIVLVSHDLGAIKQYCD--RAIWLEHGQIRMEGS 230 (249)
T ss_pred c-CCEEEEEECCHHHHHHhcC--eeEEEeCCEEEEcCC
Confidence 4 6899999999999999999 999999999888764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.2e-15 Score=166.02 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=108.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--H--hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--L--AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--l--aq~G-----------------------~~vPa~~~ 1065 (1288)
..+.++++|.+ .+|++++|+||||+|||||+|+|+|+.- . ...| .|+|+...
T Consensus 18 ~~~l~~is~~i-~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 96 (251)
T PRK14244 18 KQILFDINLDI-YKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96 (251)
T ss_pred eeeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc
Confidence 46789999999 7899999999999999999999998742 0 0111 24444321
Q ss_pred cc--chHHHH-----------------------HHhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1066 EI--SPVDRI-----------------------FVRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1066 ~l--~~~d~i-----------------------~~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
.+ .+.+.+ +..+|..+ .+......++ ++.++++.+.+++.+|+++|||||
T Consensus 97 ~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 176 (251)
T PRK14244 97 PFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEP 176 (251)
T ss_pred cccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 11 222222 12222211 1112223444 566678888888999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
++|.|+.....+ ..+|..+. + ++++|++||+.+++..+++ ++.+++.|.++..+
T Consensus 177 t~~LD~~~~~~l-~~~l~~~~-~-~~tiiiisH~~~~~~~~~d--~i~~l~~G~i~~~~ 230 (251)
T PRK14244 177 CSALDPVATNVI-ENLIQELK-K-NFTIIVVTHSMKQAKKVSD--RVAFFQSGRIVEYN 230 (251)
T ss_pred CccCCHHHHHHH-HHHHHHHh-c-CCeEEEEeCCHHHHHhhcC--EEEEEECCEEEEeC
Confidence 999888755544 46666663 3 7899999999999988888 89999988877654
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.6e-15 Score=162.51 Aligned_cols=155 Identities=18% Similarity=0.196 Sum_probs=107.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccccc--chH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIFEI--SPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~~l--~~~ 1070 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+...-+ .+.
T Consensus 17 ~~~l~~i~~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~ 95 (221)
T cd03244 17 PPVLKNISFSI-KPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIR 95 (221)
T ss_pred cccccceEEEE-CCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHH
Confidence 36899999999 78999999999999999999999985311 11113444432111 111
Q ss_pred H--------------HHHHhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1071 D--------------RIFVRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1071 d--------------~i~~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
+ ..+.+++..+.+. .....++ ++.++++.+.+++.+|+|+|||||++|.|+...
T Consensus 96 enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~ 175 (221)
T cd03244 96 SNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175 (221)
T ss_pred HHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 1 1223344444332 2345555 566677888888999999999999999888765
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..+ +.++..+. . +.++|++||+.+.+.. ++ ++..++.|.++..+
T Consensus 176 ~~l-~~~l~~~~-~-~~tii~~sh~~~~~~~-~d--~i~~l~~g~~~~~~ 219 (221)
T cd03244 176 ALI-QKTIREAF-K-DCTVLTIAHRLDTIID-SD--RILVLDKGRVVEFD 219 (221)
T ss_pred HHH-HHHHHHhc-C-CCEEEEEeCCHHHHhh-CC--EEEEEECCeEEecC
Confidence 544 45666653 3 5799999999998865 65 88888888776543
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-15 Score=167.13 Aligned_cols=170 Identities=18% Similarity=0.163 Sum_probs=114.6
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-H---hhcC----------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-L---AQVG---------- 1057 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-l---aq~G---------- 1057 (1288)
+.|.+++...-+ .+..+.++++|++ .+|++++|+||||+|||||||+|+|+.. . ...|
T Consensus 20 ~~l~~~~l~~~~-------~~~~il~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 20 HILEVKDLSIYY-------GEKRAVNDISMDI-EKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred ceEEEEEEEEEe-------CCceeeeceEEEE-cCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 456666654322 1246899999999 7899999999999999999999998631 1 1111
Q ss_pred -------------ccccccccc--cchHHHHH----------------------HhcCch----hhHhhcccchH-HHHH
Q 000778 1058 -------------ADVPAEIFE--ISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELS 1095 (1288)
Q Consensus 1058 -------------~~vPa~~~~--l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~ 1095 (1288)
.|+|+.... ..+.+.+. ..++.. +.+......++ ++.+
T Consensus 92 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 92 DSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred cccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHH
Confidence 234433211 12222221 111110 11122334455 4556
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1096 ~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+++.+.+++.+|+++|||||++|.|+.....+ ..++..+.+ +.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~--~~tiii~tH~~~~~~~~~d--~v~~l~~G~i~~~~ 245 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKI-EELITELKE--EYSIIIVTHNMQQALRVSD--RTAFFLNGDLVEYD 245 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHH-HHHHHHHhc--CCEEEEEEeCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 67788888999999999999888888866654 466666643 5799999999999888888 88899888877655
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.4e-15 Score=169.49 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=107.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G-----------------------~~vPa~~~ 1065 (1288)
..++++++|.+ .+|++++|+||||+|||||||+|+|+.-. ...| .|+|+...
T Consensus 52 ~~il~~is~~i-~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (285)
T PRK14254 52 EQALDDVSMDI-PENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN 130 (285)
T ss_pred EeeEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 46899999999 78999999999999999999999986421 1111 23443321
Q ss_pred c--cchHHHH--------------------HHhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1066 E--ISPVDRI--------------------FVRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1066 ~--l~~~d~i--------------------~~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
. ..+.+.+ +..++.. +.+......++ ++.++++.+.+++.+|+|||||||++|
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~ 210 (285)
T PRK14254 131 PFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASA 210 (285)
T ss_pred cCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 1 1222222 1222221 12233345566 456677888888999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceE-EeeeEEEEecC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVS-LCHMACQVGNG 1174 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~-~~~~~~~~~~g 1174 (1288)
.|+.....+ ..++..+.+ +.++|++||+++++..+++ ++. +++.|.++..+
T Consensus 211 LD~~~~~~l-~~~L~~~~~--~~tiii~tH~~~~i~~~~d--ri~v~l~~G~i~~~g 262 (285)
T PRK14254 211 LDPVATSKI-EDLIEELAE--EYTVVIVTHNMQQAARISD--KTAVFLTGGELVEFD 262 (285)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHhhcC--EEEEEeeCCEEEEeC
Confidence 988755544 466666754 3799999999999988887 654 55777766544
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.60 E-value=5e-15 Score=161.34 Aligned_cols=157 Identities=17% Similarity=0.093 Sum_probs=103.9
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--hhcCcc------ccc---c-ccccchH---HHHHHh
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--AQVGAD------VPA---E-IFEISPV---DRIFVR 1076 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--aq~G~~------vPa---~-~~~l~~~---d~i~~~ 1076 (1288)
+..+..+++|.+ .+|++++|+||||+||||||++|+|+.-. ...|.. +.. . ...++++ ..++..
T Consensus 19 ~~~il~~~s~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 97 (202)
T cd03233 19 KIPILKDFSGVV-KPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPT 97 (202)
T ss_pred CceeeeeEEEEE-CCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCC
Confidence 346889999999 78999999999999999999999997541 222311 100 0 0011111 112222
Q ss_pred cCchhhHh--------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEE-
Q 000778 1077 MGAKDHIM--------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFS- 1146 (1288)
Q Consensus 1077 ig~~d~i~--------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~- 1146 (1288)
+.+.+++. .....++ +|.++++.+.+++.+|+++|||||++|.|+.....+ +.++.++.++.+.++|++
T Consensus 98 ~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~-~~~l~~~~~~~~~t~ii~~ 176 (202)
T cd03233 98 LTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEI-LKCIRTMADVLKTTTFVSL 176 (202)
T ss_pred CcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHH-HHHHHHHHHhCCCEEEEEE
Confidence 33333332 2234455 566778888889999999999999999888765544 466777765445666665
Q ss_pred cCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1147 THYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1147 TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
+|+.+.+..+++ ++.+++.|.++.
T Consensus 177 ~h~~~~~~~~~d--~i~~l~~G~i~~ 200 (202)
T cd03233 177 YQASDEIYDLFD--KVLVLYEGRQIY 200 (202)
T ss_pred cCCHHHHHHhCC--eEEEEECCEEEe
Confidence 555677777887 888888887654
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-15 Score=159.61 Aligned_cols=133 Identities=15% Similarity=0.105 Sum_probs=90.6
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchH-H
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFL-T 1092 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~-~ 1092 (1288)
.+.+++ |.+ .+|++++|+||||+|||||||+|+|+.. ...|...-.. ..+++..+ ... ++ +
T Consensus 14 ~~l~~~-~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g-~~i~~~~q---------~~~-----LSgG 75 (177)
T cd03222 14 FLLVEL-GVV-KEGEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDG-ITPVYKPQ---------YID-----LSGG 75 (177)
T ss_pred EEEccC-cEE-CCCCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECC-EEEEEEcc---------cCC-----CCHH
Confidence 344553 666 6799999999999999999999998543 2223221110 01111110 000 44 4
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1093 ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1093 e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
+.++++.+.+++.+|+++|||||++|.|+.....+. .++..+.++.+.++|++||+++.+..+++ ++.+++.
T Consensus 76 q~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~~~~tiiivsH~~~~~~~~~d--~i~~l~~ 147 (177)
T cd03222 76 ELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAA-RAIRRLSEEGKKTALVVEHDLAVLDYLSD--RIHVFEG 147 (177)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEEECCHHHHHHhCC--EEEEEcC
Confidence 556777788889999999999998888888666554 45555555434899999999999988887 6665553
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-15 Score=150.52 Aligned_cols=154 Identities=21% Similarity=0.261 Sum_probs=106.9
Q ss_pred CCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc-----
Q 000778 1011 KGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF----- 1065 (1288)
Q Consensus 1011 ~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~----- 1065 (1288)
.+..++|+++|.+ .+|++++||||+|||||||||++|.+.- ..|-.+|+-+..+
T Consensus 14 ~~a~il~~isl~v-~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~t 92 (223)
T COG4619 14 GDAKILNNISLSV-RAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDT 92 (223)
T ss_pred CCCeeecceeeee-cCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccc
Confidence 4578999999999 8999999999999999999999997541 1122222211111
Q ss_pred -----ccc-----------hHHHHHHhcCchhhHhhcc-cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1066 -----EIS-----------PVDRIFVRMGAKDHIMAGQ-STFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1066 -----~l~-----------~~d~i~~~ig~~d~i~~~~-Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.++ .+-.++.|++..+.+.... ..++ +|.++++.+..+..-|.+|||||+++..|+.....|
T Consensus 93 VeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~i 172 (223)
T COG4619 93 VEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172 (223)
T ss_pred hhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHH
Confidence 111 1223566777766665432 2333 788899999999999999999999666666656655
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
- +++.++....+..++.+||+.+.+...++ ++..+..|
T Consensus 173 e-~mi~~~v~~q~vAv~WiTHd~dqa~rha~--k~itl~~G 210 (223)
T COG4619 173 E-EMIHRYVREQNVAVLWITHDKDQAIRHAD--KVITLQPG 210 (223)
T ss_pred H-HHHHHHhhhhceEEEEEecChHHHhhhhh--eEEEeccC
Confidence 4 45555554457899999999999777666 44444443
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.1e-15 Score=165.26 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=105.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~--~l~~~ 1070 (1288)
..+.++++|++ .+|++++|+||||+||||||++|+|+... .+.-.|+|+... ...+.
T Consensus 16 ~~~l~~i~~~i-~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (238)
T cd03249 16 VPILKGLSLTI-PPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIA 94 (238)
T ss_pred ccceeceEEEe-cCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHH
Confidence 35789999998 78999999999999999999999986411 111234444321 11222
Q ss_pred HHHH---------------HhcCchhhH-----------hhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRIF---------------VRMGAKDHI-----------MAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i~---------------~~ig~~d~i-----------~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.+. ...+..+.+ ......++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~ 174 (238)
T cd03249 95 ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174 (238)
T ss_pred HHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 2211 011111111 11123455 45566777778899999999999999988886
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+ +.++..+. + ++++|++||+++++. .++ ++..++.|.++..+
T Consensus 175 ~~~l-~~~l~~~~-~-g~~vi~~sh~~~~~~-~~d--~v~~l~~G~i~~~~ 219 (238)
T cd03249 175 EKLV-QEALDRAM-K-GRTTIVIAHRLSTIR-NAD--LIAVLQNGQVVEQG 219 (238)
T ss_pred HHHH-HHHHHHhc-C-CCEEEEEeCCHHHHh-hCC--EEEEEECCEEEEeC
Confidence 6544 45666664 3 789999999999986 677 88888888876554
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.2e-15 Score=165.61 Aligned_cols=157 Identities=16% Similarity=0.143 Sum_probs=103.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH-HHhhcC----------------------ccccccccccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-ILAQVG----------------------ADVPAEIFEISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~-ilaq~G----------------------~~vPa~~~~l~~ 1069 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+. +....| .|+++.....+.
T Consensus 14 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (248)
T PRK09580 14 KAILRGLNLEV-RPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92 (248)
T ss_pred eeeeecceeEE-cCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccc
Confidence 35789999998 789999999999999999999999973 112222 122322110000
Q ss_pred ----------HH---------------------HHHHhcCchhh-Hhhcc-cchH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1070 ----------VD---------------------RIFVRMGAKDH-IMAGQ-STFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1070 ----------~d---------------------~i~~~ig~~d~-i~~~~-Stf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
.. .++..++..+. ..... ..++ ++.++++.+.+++.+|+++|||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEP 172 (248)
T PRK09580 93 VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 172 (248)
T ss_pred hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 00 00111111000 00111 2466 455667788888999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhh-cCCCceEEeeeEEEEecC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDY-KKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~-~~~~~v~~~~~~~~~~~g 1174 (1288)
++|.|+.....+ ..++.++.+ .++|+|++||+++++... ++ ++.+++.|.++..|
T Consensus 173 t~~LD~~~~~~l-~~~l~~l~~-~~~tiii~sH~~~~~~~~~~d--~i~~l~~g~i~~~g 228 (248)
T PRK09580 173 DSGLDIDALKIV-ADGVNSLRD-GKRSFIIVTHYQRILDYIKPD--YVHVLYQGRIVKSG 228 (248)
T ss_pred CccCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCCHHHHHhhhCC--EEEEEECCeEEEeC
Confidence 888888765544 356666754 378999999999998876 66 78888888776554
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.2e-15 Score=165.67 Aligned_cols=156 Identities=18% Similarity=0.156 Sum_probs=107.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~G-----------------------~~vPa~~~ 1065 (1288)
..+++|++|.+ .+|++++|+||||+||||||++|+|+.-.. ..| .|+|+...
T Consensus 17 ~~~l~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 17 NHVIKGVDLKI-PQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95 (253)
T ss_pred eeeeecceEEE-cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence 46899999999 789999999999999999999999874221 112 23333321
Q ss_pred ---ccchHHHHH-----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeC
Q 000778 1066 ---EISPVDRIF-----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDE 1114 (1288)
Q Consensus 1066 ---~l~~~d~i~-----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDE 1114 (1288)
.+++.+.+. ..++.. ..+......++ ++.++++.+.+++.+|+++||||
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 175 (253)
T PRK14267 96 PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175 (253)
T ss_pred cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 122233221 111111 01111223344 56667888888899999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1115 LGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1115 pg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|++|.|+.....+ ..++..+.+ ++++|++||+++.+..+++ +|.+++.|.++..+
T Consensus 176 P~~~LD~~~~~~l-~~~l~~~~~--~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 230 (253)
T PRK14267 176 PTANIDPVGTAKI-EELLFELKK--EYTIVLVTHSPAQAARVSD--YVAFLYLGKLIEVG 230 (253)
T ss_pred CCccCCHHHHHHH-HHHHHHHhh--CCEEEEEECCHHHHHhhCC--EEEEEECCEEEEeC
Confidence 9999988755544 456666643 5899999999999988888 88888888877654
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-15 Score=155.29 Aligned_cols=159 Identities=19% Similarity=0.252 Sum_probs=111.1
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH---------------------HHhhcCcc----ccccccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGAD----VPAEIFE 1066 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~---------------------ilaq~G~~----vPa~~~~ 1066 (1288)
+-..+|+++|.+ ..|++-+|+||||+||||+|-.|.|-+ -.|++|.- .|.-.-.
T Consensus 17 GF~Aln~ls~~v-~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ 95 (249)
T COG4674 17 GFKALNDLSFSV-DPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFEN 95 (249)
T ss_pred ceeeeeeeEEEe-cCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhh
Confidence 346789999999 789999999999999999999999843 23444421 0110011
Q ss_pred cc--------------h---------------HHHHHHhcCchhhHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCC
Q 000778 1067 IS--------------P---------------VDRIFVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1067 l~--------------~---------------~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~i-l~~a~~~sLvLLDEpg 1116 (1288)
++ + +|.++..+|..+......++++-..++.-.| +-++.+|.|||||||.
T Consensus 96 ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPv 175 (249)
T COG4674 96 LTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPV 175 (249)
T ss_pred ccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCcc
Confidence 11 1 2223333444333333334444222222222 2257999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
+|..-.+....+ .++..|+. ++.+|++.||++++..+++ +|.++|.|.+..+|+.
T Consensus 176 AGMTd~Et~~ta-eLl~~la~--~hsilVVEHDM~Fvr~~A~--~VTVlh~G~VL~EGsl 230 (249)
T COG4674 176 AGMTDAETEKTA-ELLKSLAG--KHSILVVEHDMGFVREIAD--KVTVLHEGSVLAEGSL 230 (249)
T ss_pred CCCcHHHHHHHH-HHHHHHhc--CceEEEEeccHHHHHHhhh--eeEEEeccceeecccH
Confidence 999998887766 67777854 6899999999999999998 9999999999998864
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.59 E-value=6e-15 Score=162.82 Aligned_cols=152 Identities=19% Similarity=0.222 Sum_probs=105.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~ 1066 (1288)
..+.++++|.+ .+|++++|+||||+|||||+++|+|+.-. .+...|+|.... .
T Consensus 18 ~~il~~vs~~i-~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (220)
T TIGR02982 18 KQVLFDINLEI-NPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGF 96 (220)
T ss_pred eeEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCC
Confidence 46889999998 78999999999999999999999985310 111234443321 1
Q ss_pred cchH----------------------HHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1067 ISPV----------------------DRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1067 l~~~----------------------d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.++. ..++.++|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 97 ~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~ 176 (220)
T TIGR02982 97 LTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176 (220)
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence 1221 222334444444444445565 45566777888899999999999988888875
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEE
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMAC 1169 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~ 1169 (1288)
...+ ..+++.+.+..++++|++||++++. .+++ +|..++.|.
T Consensus 177 ~~~l-~~~l~~~~~~~~~tii~~sh~~~~~-~~~d--~v~~l~~g~ 218 (220)
T TIGR02982 177 GRDV-VELMQKLAREQGCTILIVTHDNRIL-DVAD--RIVHMEDGK 218 (220)
T ss_pred HHHH-HHHHHHHHHHcCCEEEEEeCCHHHH-hhCC--EEEEEECCE
Confidence 5544 4667767654589999999999864 5677 777776654
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.6e-15 Score=184.59 Aligned_cols=159 Identities=17% Similarity=0.124 Sum_probs=114.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH----------------------HhhcCccccccc-----c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------------LAQVGADVPAEI-----F 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i----------------------laq~G~~vPa~~-----~ 1065 (1288)
..+.++++|.+ .+|++++|+||||||||||||+|+|+.. +.+.-.|+|+.. .
T Consensus 299 ~~il~~isl~i-~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~ 377 (529)
T PRK15134 299 NVVVKNISFTL-RPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNP 377 (529)
T ss_pred ceeeecceeEE-cCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCC
Confidence 46899999999 7899999999999999999999998641 001113455442 0
Q ss_pred ccchHHH-----------------------HHHhcCch-hhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1066 EISPVDR-----------------------IFVRMGAK-DHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1066 ~l~~~d~-----------------------i~~~ig~~-d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
.+.+.+. ++..+|.. +.......++|+ +.++++.+.+++.+|+++|||||++|.|
T Consensus 378 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 457 (529)
T PRK15134 378 RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457 (529)
T ss_pred cccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccC
Confidence 1122222 23334443 233444566664 5556777788899999999999988888
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.....+. .++..+.++.++++|++||+++++..+++ ++.+++.|.++..+.
T Consensus 458 ~~~~~~l~-~~l~~~~~~~~~tvi~vsHd~~~~~~~~d--~i~~l~~G~i~~~~~ 509 (529)
T PRK15134 458 KTVQAQIL-ALLKSLQQKHQLAYLFISHDLHVVRALCH--QVIVLRQGEVVEQGD 509 (529)
T ss_pred HHHHHHHH-HHHHHHHHhhCCEEEEEeCCHHHHHHhcC--eEEEEECCEEEEEcC
Confidence 88665544 66666765558899999999999999888 899999998876653
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.6e-15 Score=161.79 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=101.3
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC--------cccccccc--ccchHHHHH---------
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG--------ADVPAEIF--EISPVDRIF--------- 1074 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G--------~~vPa~~~--~l~~~d~i~--------- 1074 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.- ...| .|+|+... ..++.+.+.
T Consensus 19 ~il~~~s~~i-~~G~~~~i~G~nG~GKSTLl~~i~G~~~-~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~ 96 (204)
T cd03250 19 FTLKDINLEV-PKGELVAIVGPVGSGKSSLLSALLGELE-KLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEER 96 (204)
T ss_pred ceeeeeeEEE-CCCCEEEEECCCCCCHHHHHHHHhCcCC-CCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHH
Confidence 5788999999 7899999999999999999999999642 2222 34554421 122222221
Q ss_pred -----HhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 000778 1075 -----VRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVH 1137 (1288)
Q Consensus 1075 -----~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~ 1137 (1288)
..++..+.+. .....++ ++.++++.+.+++.+|+++|||||++|.|+.....+...++..+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~ 176 (204)
T cd03250 97 YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL 176 (204)
T ss_pred HHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc
Confidence 1122222221 1124455 5666788888889999999999998888887555554445555544
Q ss_pred ccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1138 KVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1138 ~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
. +.++|++||+++.+.. ++ ++..++.|
T Consensus 177 ~-~~tvi~~sh~~~~~~~-~d--~i~~l~~G 203 (204)
T cd03250 177 N-NKTRILVTHQLQLLPH-AD--QIVVLDNG 203 (204)
T ss_pred C-CCEEEEEeCCHHHHhh-CC--EEEEEeCC
Confidence 4 7899999999998876 66 66665543
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.4e-15 Score=164.38 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=106.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~--~l~~~ 1070 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... ..++.
T Consensus 15 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (237)
T cd03252 15 PVILDNISLRI-KPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR 93 (237)
T ss_pred ccceeceEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHH
Confidence 46789999999 78999999999999999999999986411 111234454421 11222
Q ss_pred HHHH---------------HhcCchhh-----------HhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRIF---------------VRMGAKDH-----------IMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i~---------------~~ig~~d~-----------i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.+. ...+..+. +.....+++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (237)
T cd03252 94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173 (237)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 2221 11122111 112235566 45556777788899999999999999998886
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+. .++..+. + ++++|++||+++++. .++ ++.+++.|.++..+
T Consensus 174 ~~~l~-~~l~~~~-~-~~tiii~sH~~~~~~-~~d--~v~~l~~G~i~~~~ 218 (237)
T cd03252 174 EHAIM-RNMHDIC-A-GRTVIIIAHRLSTVK-NAD--RIIVMEKGRIVEQG 218 (237)
T ss_pred HHHHH-HHHHHhc-C-CCEEEEEeCCHHHHH-hCC--EEEEEECCEEEEEc
Confidence 66544 5556664 3 789999999999885 466 89999998877654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.2e-15 Score=165.47 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=108.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G-----------------------~~vPa~~~ 1065 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. ...| .|+|+...
T Consensus 17 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 17 KQALNDINLPI-YENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred eeeeeceeEEE-cCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 35789999999 78999999999999999999999986421 0112 23443321
Q ss_pred c--cchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 E--ISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~--l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
. ..+.+.+. ..++.. +........++ ++.++++.+.+++.+|+++|||||+
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 175 (251)
T PRK14270 96 PFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPT 175 (251)
T ss_pred cCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1 12222221 111110 11222334455 5566778888889999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ ..++..+.+ +.++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 176 ~~LD~~~~~~l-~~~L~~~~~--~~tiiivsH~~~~~~~~~d--~v~~l~~G~i~~~~ 228 (251)
T PRK14270 176 SALDPISTLKI-EDLMVELKK--EYTIVIVTHNMQQASRVSD--YTAFFLMGDLIEFN 228 (251)
T ss_pred ccCCHHHHHHH-HHHHHHHHh--CCeEEEEEcCHHHHHHhcC--EEEEEECCeEEEeC
Confidence 99888765554 456666644 4799999999999988888 89999999887665
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.7e-15 Score=165.13 Aligned_cols=156 Identities=19% Similarity=0.155 Sum_probs=108.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC---------------------cccccccc--
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG---------------------ADVPAEIF-- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G---------------------~~vPa~~~-- 1065 (1288)
..++++++|++ .+|++++|+||||+||||||++|+|+.-. ...| .|+|+...
T Consensus 16 ~~~l~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 16 VEVLDGVNLEI-PDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred eeeeecceeEE-cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence 36889999999 78999999999999999999999986421 0112 24444321
Q ss_pred -ccchHHHHH-----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 -EISPVDRIF-----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 -~l~~~d~i~-----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
..++.+.+. ..+|.. +.+......++ ++.++++.+.+++.+|+++|||||+
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~ 174 (250)
T PRK14247 95 PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT 174 (250)
T ss_pred CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 123333331 112221 11222334555 4556778888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+. .++..+. + +.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 175 ~~LD~~~~~~l~-~~l~~~~-~-~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~g 227 (250)
T PRK14247 175 ANLDPENTAKIE-SLFLELK-K-DMTIVLVTHFPQQAARISD--YVAFLYKGQIVEWG 227 (250)
T ss_pred ccCCHHHHHHHH-HHHHHHh-c-CCEEEEEeCCHHHHHHhcC--EEEEEECCeEEEEC
Confidence 888888655444 5566664 3 6899999999999888888 88888888776654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.6e-15 Score=182.94 Aligned_cols=157 Identities=14% Similarity=0.147 Sum_probs=112.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCcccccccc---ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEIF---EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~~---~l~ 1068 (1288)
..+.++++|++ .+|++++|+||||||||||||+|+|+.-. .+.-.|+|+... .++
T Consensus 11 ~~il~~vs~~i-~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (491)
T PRK10982 11 VKALDNVNLKV-RPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS 89 (491)
T ss_pred EEeeeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence 45788999999 78999999999999999999999986411 011124554321 122
Q ss_pred hHHHH------------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1069 PVDRI------------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1069 ~~d~i------------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.+.+ +.+++..........++| ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~ 169 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE 169 (491)
T ss_pred HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 22222 222333322333345566 45566777778899999999999988888886
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+ ..++..+.+. |.++|++||+.+++..+++ +|.+++.|.++..+
T Consensus 170 ~~~l-~~~l~~l~~~-g~tvii~tH~~~~~~~~~d--~i~~l~~G~i~~~~ 216 (491)
T PRK10982 170 VNHL-FTIIRKLKER-GCGIVYISHKMEEIFQLCD--EITILRDGQWIATQ 216 (491)
T ss_pred HHHH-HHHHHHHHhC-CCEEEEEecCHHHHHHhCC--EEEEEECCEEEeec
Confidence 5544 4667777554 8899999999999998888 89999988887654
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.3e-15 Score=165.67 Aligned_cols=156 Identities=16% Similarity=0.126 Sum_probs=106.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hcC-----------------------ccccccc-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QVG-----------------------ADVPAEI- 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~G-----------------------~~vPa~~- 1064 (1288)
..++++++|.+ .+|++++|+||||||||||||+|+|+.-.. ..| .|+++..
T Consensus 17 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 17 FHAVEDVNLNI-EPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred EeeeeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 35789999999 789999999999999999999999865210 112 2333321
Q ss_pred --cccchHHHH----------------------HHhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1065 --FEISPVDRI----------------------FVRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1065 --~~l~~~d~i----------------------~~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
..+++.+.+ +..+|.. +.+.....+++ ++.++++.+.+++.+|+++|||||
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEP 175 (258)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 112223322 1112211 11222334555 566678888888999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee------eEEEEecC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH------MACQVGNG 1174 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~------~~~~~~~g 1174 (1288)
++|.|+.....+ ..++..+. + ++++|++||+.+.+..+++ ++.++. .|.++..+
T Consensus 176 t~~LD~~~~~~l-~~~l~~~~-~-~~tviivsH~~~~~~~~~d--~i~~l~~~~~~~~g~i~~~~ 235 (258)
T PRK14241 176 CSALDPISTLAI-EDLINELK-Q-DYTIVIVTHNMQQAARVSD--QTAFFNLEATGKPGRLVEID 235 (258)
T ss_pred CccCCHHHHHHH-HHHHHHHh-c-CCEEEEEecCHHHHHHhCC--EEEEEecccCCCCceEEecC
Confidence 888888865554 46666664 3 5799999999999988888 777775 46665544
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-15 Score=183.88 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=112.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----------------------hcCccccccc------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----------------------QVGADVPAEI------ 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----------------------q~G~~vPa~~------ 1064 (1288)
..+.+|++|++ .+|++++|+||||||||||||+|+|+.-.. +.-.|+|+..
T Consensus 275 ~~vl~~vsl~i-~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 275 IKRVDDVSFSL-RRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred cccccceeeEE-cCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 35889999999 789999999999999999999999864210 0013445431
Q ss_pred cccchHHH--------------------------HHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1065 FEISPVDR--------------------------IFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1065 ~~l~~~d~--------------------------i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
..+++.+. ++.+++.. +.......++| ++.++++.+.+++.+|.++|||||+
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt 433 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPT 433 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 11222222 23333332 22333345666 4555677777889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ +.++..+.++ |.++|++||+++++..+++ ++.+++.|.++..+
T Consensus 434 ~~LD~~~~~~l-~~~l~~l~~~-g~tvi~~sHd~~~~~~~~d--~v~~l~~G~i~~~~ 487 (506)
T PRK13549 434 RGIDVGAKYEI-YKLINQLVQQ-GVAIIVISSELPEVLGLSD--RVLVMHEGKLKGDL 487 (506)
T ss_pred CCcCHhHHHHH-HHHHHHHHHC-CCEEEEECCCHHHHHHhCC--EEEEEECCEEEEEe
Confidence 88888855544 5677777665 8999999999999999998 88888888776554
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.6e-15 Score=164.48 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=106.3
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc--ccchHH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF--EISPVD 1071 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~--~l~~~d 1071 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... ..++.+
T Consensus 16 ~~l~~i~~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 94 (234)
T cd03251 16 PVLRDISLDI-PAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAE 94 (234)
T ss_pred cceeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHH
Confidence 5788999998 78999999999999999999999986421 111234444321 112222
Q ss_pred HHH---------------HhcCchhhH-----------hhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1072 RIF---------------VRMGAKDHI-----------MAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1072 ~i~---------------~~ig~~d~i-----------~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.+. ...++.+.+ ......++ ++.++++.+.+++.+|+++|||||++|.|+...
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 174 (234)
T cd03251 95 NIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESE 174 (234)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 221 011111111 11123454 566778888889999999999999999988876
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..+ ..++..+. + +.++|++||+++++.. ++ ++.+++.|.++..+
T Consensus 175 ~~l-~~~l~~~~-~-~~tii~~sh~~~~~~~-~d--~v~~l~~G~i~~~~ 218 (234)
T cd03251 175 RLV-QAALERLM-K-NRTTFVIAHRLSTIEN-AD--RIVVLEDGKIVERG 218 (234)
T ss_pred HHH-HHHHHHhc-C-CCEEEEEecCHHHHhh-CC--EEEEecCCeEeeeC
Confidence 655 46666664 3 7899999999999865 76 88899888877654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.7e-15 Score=169.43 Aligned_cols=171 Identities=15% Similarity=0.083 Sum_probs=113.6
Q ss_pred CCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhc----------
Q 000778 991 EPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQV---------- 1056 (1288)
Q Consensus 991 ~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~---------- 1056 (1288)
.+.|.+.+...-+ .+..++++++|++ .+|++++|+||||+||||||++|+|+.-. ...
T Consensus 43 ~~~l~i~nl~~~~-------~~~~iL~~is~~i-~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i 114 (305)
T PRK14264 43 DAKLSVEDLDVYY-------GDDHALKGVSMDI-PEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI 114 (305)
T ss_pred CceEEEEEEEEEe-------CCeeeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 3456666654322 1246899999999 78999999999999999999999987421 111
Q ss_pred -------------Ccccccccc--ccchHHHHH----------------------------------HhcCch----hhH
Q 000778 1057 -------------GADVPAEIF--EISPVDRIF----------------------------------VRMGAK----DHI 1083 (1288)
Q Consensus 1057 -------------G~~vPa~~~--~l~~~d~i~----------------------------------~~ig~~----d~i 1083 (1288)
..|+|+... ...+.+.+. ..++.. +.+
T Consensus 115 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 115 YQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred ccccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 124444321 012222221 111110 111
Q ss_pred hhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCce
Q 000778 1084 MAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRV 1162 (1288)
Q Consensus 1084 ~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v 1162 (1288)
......++ ++.++++.+.+++.+|+|||||||++|.|+.....+ ..+|..+.+ +.++|++||+++.+..+++ ++
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l-~~~L~~~~~--~~tiiivtH~~~~i~~~~d--~i 269 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKI-EDLIEELAE--EYTVVVVTHNMQQAARISD--QT 269 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhc--CCEEEEEEcCHHHHHHhcC--EE
Confidence 22234455 455677888888999999999999999988755544 466666654 4799999999999988888 75
Q ss_pred -EEeeeEEEEecC
Q 000778 1163 -SLCHMACQVGNG 1174 (1288)
Q Consensus 1163 -~~~~~~~~~~~g 1174 (1288)
.+++.|.++..+
T Consensus 270 ~~~l~~G~i~~~g 282 (305)
T PRK14264 270 AVFLTGGELVEYD 282 (305)
T ss_pred EEEecCCEEEEeC
Confidence 456788777654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.8e-15 Score=183.18 Aligned_cols=156 Identities=14% Similarity=0.143 Sum_probs=111.1
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCccccccc------cc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEI------FE 1066 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~------~~ 1066 (1288)
.+.++++|.+ .+|++++|+||||||||||||+|+|+.-. .+.-.|||+.. ..
T Consensus 266 ~~l~~vsl~i-~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 266 PGVNDVSFTL-RKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CCcccceEEE-cCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 3688999999 78999999999999999999999985311 01123555542 11
Q ss_pred cchHH---------------------------HHHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1067 ISPVD---------------------------RIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1067 l~~~d---------------------------~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
+.+.+ .++.++|.. +.......++| +|.++++.+.+++.+|+|||||||++
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~ 424 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTR 424 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 12222 223333332 22333345566 45566777788899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|.|+.....+ ..++..+.++ |.++|++||+++++..+++ +|.+++.|.++..+
T Consensus 425 ~LD~~~~~~l-~~~l~~~~~~-g~tviivtHd~~~~~~~~d--~v~~l~~G~i~~~~ 477 (501)
T PRK10762 425 GVDVGAKKEI-YQLINQFKAE-GLSIILVSSEMPEVLGMSD--RILVMHEGRISGEF 477 (501)
T ss_pred CCCHhHHHHH-HHHHHHHHHC-CCEEEEEcCCHHHHHhhCC--EEEEEECCEEEEEe
Confidence 8888866654 4667777655 8899999999999999988 88888888776544
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.9e-15 Score=161.61 Aligned_cols=142 Identities=16% Similarity=0.153 Sum_probs=99.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccc---cccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEI---FEISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~---~~l~~ 1069 (1288)
..+.++++|.+ .+|++++|+||||+|||||+|+|+|+.-. .++ .|+|... ..+.+
T Consensus 14 ~~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~tv 91 (204)
T PRK13538 14 RILFSGLSFTL-NAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDL-LYLGHQPGIKTELTA 91 (204)
T ss_pred EEEEecceEEE-CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhhe-EEeCCccccCcCCcH
Confidence 35789999999 78999999999999999999999985311 111 2333221 11122
Q ss_pred H------------------HHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHH
Q 000778 1070 V------------------DRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAES 1130 (1288)
Q Consensus 1070 ~------------------d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~a 1130 (1288)
. +.++.++|..+......+.++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +.
T Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~ 170 (204)
T PRK13538 92 LENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARL-EA 170 (204)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HH
Confidence 2 223344455444444556666 456677888888999999999999888888866655 46
Q ss_pred HHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1131 VLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1131 ile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
++..+.++ +.++|++||+.++...+..
T Consensus 171 ~l~~~~~~-~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 171 LLAQHAEQ-GGMVILTTHQDLPVASDKV 197 (204)
T ss_pred HHHHHHHC-CCEEEEEecChhhhccCCc
Confidence 66666544 7899999999998876443
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-15 Score=158.16 Aligned_cols=136 Identities=17% Similarity=0.161 Sum_probs=94.6
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC----------ccccccccccchHHHHHHhcCchhhH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----------ADVPAEIFEISPVDRIFVRMGAKDHI 1083 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G----------~~vPa~~~~l~~~d~i~~~ig~~d~i 1083 (1288)
.+.++++|++ .+|++++|+||||+|||||+|+|+|+.- ...| .|+|+... ++ .....+++
T Consensus 15 ~~l~~i~l~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~~~i~~~~q~~~-------~~-~~tv~~nl 84 (166)
T cd03223 15 VLLKDLSFEI-KPGDRLLITGPSGTGKSSLFRALAGLWP-WGSGRIGMPEGEDLLFLPQRPY-------LP-LGTLREQL 84 (166)
T ss_pred eeeecCeEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCCceEEEECCCCc-------cc-cccHHHHh
Confidence 5788999998 7899999999999999999999998643 2223 23443321 11 23445555
Q ss_pred hh-cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCc
Q 000778 1084 MA-GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPR 1161 (1288)
Q Consensus 1084 ~~-~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~ 1161 (1288)
.. ....++ ++.++++.+.+++.+|+++|||||++|.|+.....+. .++.. .+.++|++||+.++.. .++ +
T Consensus 85 ~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~----~~~tiiivsh~~~~~~-~~d--~ 156 (166)
T cd03223 85 IYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLY-QLLKE----LGITVISVGHRPSLWK-FHD--R 156 (166)
T ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHH-HHHHH----hCCEEEEEeCChhHHh-hCC--E
Confidence 43 345565 5666778888889999999999998777776544332 33332 2689999999998754 566 5
Q ss_pred eEEeee
Q 000778 1162 VSLCHM 1167 (1288)
Q Consensus 1162 v~~~~~ 1167 (1288)
+..++.
T Consensus 157 i~~l~~ 162 (166)
T cd03223 157 VLDLDG 162 (166)
T ss_pred EEEEcC
Confidence 655543
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-15 Score=183.57 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=111.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCcccccccc---ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEIF---EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~~---~l~ 1068 (1288)
..++++++|++ .+|++++|+||||||||||||+|+|+... .+.-.|+|+... .++
T Consensus 17 ~~il~~isl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK11288 17 VKALDDISFDC-RAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMT 95 (501)
T ss_pred EEEEeeeeEEE-eCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCC
Confidence 45889999999 78999999999999999999999986411 011124554321 122
Q ss_pred hHHHH------------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1069 PVDRI------------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1069 ~~d~i------------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.+.+ +..+|..+......+++| ++.++++.+..++.+|+++|||||++|.|+..
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (501)
T PRK11288 96 VAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175 (501)
T ss_pred HHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHH
Confidence 23332 223333222233345566 45566777788899999999999988888886
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
...+ ..++..+.++ |.++|++||+++++..+++ +|.+++.|.++..
T Consensus 176 ~~~l-~~~l~~~~~~-g~tiiiitHd~~~~~~~~d--~i~~l~~G~i~~~ 221 (501)
T PRK11288 176 IEQL-FRVIRELRAE-GRVILYVSHRMEEIFALCD--AITVFKDGRYVAT 221 (501)
T ss_pred HHHH-HHHHHHHHhC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEee
Confidence 5544 4566667554 8899999999999998888 8999988887654
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.4e-15 Score=167.22 Aligned_cols=156 Identities=18% Similarity=0.184 Sum_probs=108.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hc----------------------Cccccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QV----------------------GADVPAEIFE 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~----------------------G~~vPa~~~~ 1066 (1288)
..+.+|++|++ .+|++++|+||||+||||||++|+|+.-.. .. ..|+|+....
T Consensus 34 ~~il~~vs~~i-~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l 112 (276)
T PRK14271 34 KTVLDQVSMGF-PARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNP 112 (276)
T ss_pred EEEeeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCcc
Confidence 57899999999 789999999999999999999999864210 11 1244443211
Q ss_pred --cchHHHH----------------------HHhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1067 --ISPVDRI----------------------FVRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1067 --l~~~d~i----------------------~~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
..+.+.+ +..++... .+......++ ++.++++.+.+++.+|.|||||||++
T Consensus 113 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~ 192 (276)
T PRK14271 113 FPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTS 192 (276)
T ss_pred CCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1222222 11222211 1122234455 56667888888899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|.|......+ ..+|..+.+ ++++|++||+++++..+++ ++.+++.|.++..+
T Consensus 193 ~LD~~~~~~l-~~~L~~~~~--~~tiiivsH~~~~~~~~~d--ri~~l~~G~i~~~g 244 (276)
T PRK14271 193 ALDPTTTEKI-EEFIRSLAD--RLTVIIVTHNLAQAARISD--RAALFFDGRLVEEG 244 (276)
T ss_pred cCCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 8888765544 456666643 4799999999999988888 89899888877654
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=165.61 Aligned_cols=149 Identities=17% Similarity=0.118 Sum_probs=101.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G-----------------------~~vPa~~~ 1065 (1288)
..+++|++|++ .+|++++|+||||||||||||+|+|+.-. ...| .|+|+...
T Consensus 26 ~~il~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 104 (269)
T PRK14259 26 FEAVKNVFCDI-PRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104 (269)
T ss_pred EEEEcceEEEE-cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence 46889999999 78999999999999999999999986421 1111 24444321
Q ss_pred c--cchHHHHH--------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1066 E--ISPVDRIF--------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1066 ~--l~~~d~i~--------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
. .++.+.+. ..++.. +.+......++ ++.++++.+.+++.+|+++|||||++|
T Consensus 105 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~g 184 (269)
T PRK14259 105 PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSA 184 (269)
T ss_pred cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 1 12222221 111110 11112223455 456677888888999999999999888
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
.|+.....+ +.++..+. + +.++|++||+++.+..+++ ++.+++.
T Consensus 185 LD~~~~~~l-~~~l~~~~-~-~~tiiivtH~~~~~~~~~d--~i~~l~~ 228 (269)
T PRK14259 185 LDPISTLKI-EETMHELK-K-NFTIVIVTHNMQQAVRVSD--MTAFFNA 228 (269)
T ss_pred CCHHHHHHH-HHHHHHHh-c-CCEEEEEeCCHHHHHHhcC--EEEEEec
Confidence 888765544 45666664 3 6899999999999999998 8888775
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.8e-15 Score=182.92 Aligned_cols=154 Identities=10% Similarity=0.030 Sum_probs=111.4
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCccccccc------ccc
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEI------FEI 1067 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~------~~l 1067 (1288)
+.++++|.+ .+|++++|+||||||||||||+|+|+.-. .+.-.|+|+.. ..+
T Consensus 278 ~l~~isl~i-~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 356 (510)
T PRK09700 278 KVRDISFSV-CRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF 356 (510)
T ss_pred cccceeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC
Confidence 789999999 78999999999999999999999986311 01113555531 011
Q ss_pred chHH------------------------------HHHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1068 SPVD------------------------------RIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1068 ~~~d------------------------------~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
++.+ .++.++|.. +.......++| +|.++++.+..++.+|.|||||||
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP 436 (510)
T PRK09700 357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEP 436 (510)
T ss_pred cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCC
Confidence 2222 233344443 33444455676 455667778888999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
++|.|+.....+ ..++..+.++ |.++|++||+++++..+++ ++.+++.|.++..
T Consensus 437 t~~LD~~~~~~l-~~~l~~l~~~-g~tvi~vsHd~~~~~~~~d--~i~~l~~G~i~~~ 490 (510)
T PRK09700 437 TRGIDVGAKAEI-YKVMRQLADD-GKVILMVSSELPEIITVCD--RIAVFCEGRLTQI 490 (510)
T ss_pred CCCcCHHHHHHH-HHHHHHHHHC-CCEEEEEcCCHHHHHhhCC--EEEEEECCEEEEE
Confidence 888888865544 4677777654 8899999999999999998 8888888876654
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.6e-15 Score=159.37 Aligned_cols=143 Identities=16% Similarity=0.092 Sum_probs=98.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
..+.++++|.+ .+|++++|+||||+||||||++|+|+... .+.-.|+|+... ..++.
T Consensus 13 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (201)
T cd03231 13 RALFSGLSFTL-AAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVL 91 (201)
T ss_pred ceeeccceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHH
Confidence 46789999999 78999999999999999999999985311 111123443221 11222
Q ss_pred H---------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 000778 1071 D---------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1071 d---------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~ 1134 (1288)
+ .++..++...........++ ++.++++.+.+++.+|+++|||||++|.|+.....+. .++..
T Consensus 92 e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~ 170 (201)
T cd03231 92 ENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFA-EAMAG 170 (201)
T ss_pred HHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 2 23344444443333445566 5566778888889999999999998888887655554 55656
Q ss_pred HHhccCcEEEEEcCCchhhhhhcC
Q 000778 1135 FVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1135 l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
+.++ ++++|++||+......+++
T Consensus 171 ~~~~-g~tiii~sH~~~~~~~~~~ 193 (201)
T cd03231 171 HCAR-GGMVVLTTHQDLGLSEAGA 193 (201)
T ss_pred HHhC-CCEEEEEecCchhhhhccc
Confidence 6554 8899999999887666665
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.4e-15 Score=162.61 Aligned_cols=159 Identities=17% Similarity=0.150 Sum_probs=119.3
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-------------------------------HhhcCccccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------------------LAQVGADVPA 1062 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-------------------------------laq~G~~vPa 1062 (1288)
.-.+|++|++ ..|++++|+|-+|||||||+|++..++- ..|.-..+|.
T Consensus 42 vGv~~~sl~v-~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPh 120 (386)
T COG4175 42 VGVNDASLDV-EEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH 120 (386)
T ss_pred Eeeccceeee-cCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccc
Confidence 4468999999 7899999999999999999999997541 1121122222
Q ss_pred cc----ccc-------------chHHHHHHhcCchhhHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1063 EI----FEI-------------SPVDRIFVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1063 ~~----~~l-------------~~~d~i~~~ig~~d~i~~~~Stf~~e~~~-~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.. ..+ ......+..+|..+.-......++++|++ +..+.+++++|+++|||||++..||+=.
T Consensus 121 rtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR 200 (386)
T COG4175 121 RTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIR 200 (386)
T ss_pred hhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHH
Confidence 11 000 01123455566666666666777888875 6677788999999999999999999976
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
..+-..+++ |.++.+.|++|+|||++.+..+.+ +|.+|..|.++..|++
T Consensus 201 ~~mQdeLl~-Lq~~l~KTIvFitHDLdEAlriG~--rIaimkdG~ivQ~Gtp 249 (386)
T COG4175 201 TEMQDELLE-LQAKLKKTIVFITHDLDEALRIGD--RIAIMKDGEIVQVGTP 249 (386)
T ss_pred HHHHHHHHH-HHHHhCCeEEEEecCHHHHHhccc--eEEEecCCeEEEeCCH
Confidence 665545554 666678999999999999999998 9999999999988864
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=164.20 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=108.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--H--hhc-----------------------Ccccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--L--AQV-----------------------GADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--l--aq~-----------------------G~~vPa~~~ 1065 (1288)
..++++++|.+ .+|++++|+|||||||||||++|+|+.- . ... -.|+|+...
T Consensus 17 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 17 NHAVKDVSMDF-PENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred eeEEecceEEE-cCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 46899999999 7899999999999999999999998742 0 001 123444321
Q ss_pred ---ccchHHHH----------------------HHhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1066 ---EISPVDRI----------------------FVRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1066 ---~l~~~d~i----------------------~~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
..++.+.+ +..++... .+......++ ++.++++.+.+++.+|++||||||
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 175 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEP 175 (252)
T ss_pred CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 12222222 11222211 1112234455 556677778888999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
++|.|+.....+ ..+++.+.+ +.++|++||+.+.+..+++ ++.+++.|.++..+.
T Consensus 176 ~~gLD~~~~~~l-~~~l~~~~~--~~tiiivsH~~~~~~~~~d--~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 176 ASALDPISTLKI-EELIEELKE--KYTIIIVTHNMQQAARVSD--YTAFFYMGDLVECGE 230 (252)
T ss_pred cccCCHHHHHHH-HHHHHHHHh--CCcEEEEECCHHHHHhhCC--EEEEEECCEEEEeCC
Confidence 888888765544 466777754 5799999999999988888 888899888876653
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.5e-15 Score=165.93 Aligned_cols=157 Identities=20% Similarity=0.188 Sum_probs=108.4
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh--------------------------hcCcccccccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA--------------------------QVGADVPAEIF 1065 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila--------------------------q~G~~vPa~~~ 1065 (1288)
+..+++|++|.+ .+|++++|+||||+||||||++|+|+.... +...|+|....
T Consensus 22 ~~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 22 DKAILKDITIKI-PNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred CceeEeceEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc
Confidence 356889999999 789999999999999999999999864210 01123443321
Q ss_pred ---ccchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1066 ---EISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1066 ---~l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
.+.+.+.+. ..++.. +.+......++ ++.++++.+.+++.+|+++|||||
T Consensus 101 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEP 180 (257)
T PRK14246 101 PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEP 180 (257)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 112222221 112221 11122234455 566678888889999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
++|.|......+ ..++..+. + ++++|++||+.+.+..+++ ++.+++.|.++..|
T Consensus 181 t~~LD~~~~~~l-~~~l~~~~-~-~~tiilvsh~~~~~~~~~d--~v~~l~~g~i~~~g 234 (257)
T PRK14246 181 TSMIDIVNSQAI-EKLITELK-N-EIAIVIVSHNPQQVARVAD--YVAFLYNGELVEWG 234 (257)
T ss_pred CccCCHHHHHHH-HHHHHHHh-c-CcEEEEEECCHHHHHHhCC--EEEEEECCEEEEEC
Confidence 888888765544 46666664 3 6899999999999988888 88888888776654
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.1e-15 Score=165.07 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=113.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH---Hhhc-----------------------C---cccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---LAQV-----------------------G---ADVPAE 1063 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i---laq~-----------------------G---~~vPa~ 1063 (1288)
..+.+||+|++ .+|++++|+|.+||||||+.++|.++.- .... | +++++.
T Consensus 18 v~av~~vs~~i-~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 18 VKAVDGVSFEL-KKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred EEEEeceeEEE-cCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 36789999999 8899999999999999999999998652 0111 1 233333
Q ss_pred cc-cc----chHHH-----------------------HHHhcCchh---hHhhcccchHHHHHH-HHHHHHhCCCCcEEE
Q 000778 1064 IF-EI----SPVDR-----------------------IFVRMGAKD---HIMAGQSTFLTELSE-TALMLSSATRNSLVV 1111 (1288)
Q Consensus 1064 ~~-~l----~~~d~-----------------------i~~~ig~~d---~i~~~~Stf~~e~~~-~~~il~~a~~~sLvL 1111 (1288)
.. .+ .+-++ ++..+|..+ .+......||++|++ +..+++++.+|+|||
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlI 176 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLI 176 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEE
Confidence 20 01 11111 223333332 223344567777765 566677899999999
Q ss_pred EeCCCCCCChHHH--HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1112 LDELGRGTSTSDG--QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1112 LDEpg~GTs~~Dg--~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.||| |..+|. ++....+|+.|.++.|+++||+|||+.++..+++ +|.+|+.|.+++.|.
T Consensus 177 ADEP---TTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aD--ri~VMYaG~iVE~g~ 237 (316)
T COG0444 177 ADEP---TTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIAD--RVAVMYAGRIVEEGP 237 (316)
T ss_pred eCCC---cchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcc--eEEEEECcEEEEeCC
Confidence 9999 666663 3334478888888789999999999999999999 999999999999885
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=162.75 Aligned_cols=156 Identities=17% Similarity=0.129 Sum_probs=108.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hcC----------------------ccccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QVG----------------------ADVPAEIFE 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~G----------------------~~vPa~~~~ 1066 (1288)
..++++++|.+ .+|++++|+||||+|||||||+|+|+.-.. ..| .|+|+....
T Consensus 16 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 94 (249)
T PRK14253 16 NQALKSINLPI-PARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94 (249)
T ss_pred eeeeecceEEe-cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc
Confidence 46899999999 789999999999999999999999864310 112 234433211
Q ss_pred --cchHHHHHH----------------------hcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1067 --ISPVDRIFV----------------------RMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1067 --l~~~d~i~~----------------------~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
.++.+.+.- .++.. +.+......++ ++.++++.+.+++.+|+|+|||||++
T Consensus 95 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 174 (249)
T PRK14253 95 FPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTS 174 (249)
T ss_pred CcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 122222210 01110 11112223455 56667788888899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|.|+..... ...++..+.+ +.++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 175 ~LD~~~~~~-l~~~l~~~~~--~~tii~~sh~~~~~~~~~d--~i~~l~~G~i~~~g 226 (249)
T PRK14253 175 ALDPIATHK-IEELMEELKK--NYTIVIVTHSMQQARRISD--RTAFFLMGELVEHD 226 (249)
T ss_pred cCCHHHHHH-HHHHHHHHhc--CCeEEEEecCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 888875443 4467777743 5799999999999998888 89999999887665
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-15 Score=153.65 Aligned_cols=128 Identities=19% Similarity=0.166 Sum_probs=90.0
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchH-H
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFL-T 1092 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~-~ 1092 (1288)
.+.++++|.+ .+|++++|+||||+|||||+++|+|+.- ...|...-.....++++.+ ++ +
T Consensus 14 ~~l~~~~~~~-~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~~-----------------lS~G 74 (144)
T cd03221 14 LLLKDISLTI-NPGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQ-----------------LSGG 74 (144)
T ss_pred eEEEeeEEEE-CCCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEcc-----------------CCHH
Confidence 5678889998 7899999999999999999999998542 1223111100011111111 44 5
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1093 ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1093 e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
+.++++.+.+++.+|+++|||||++|.|+.....+. .++..+ ++++|++||+++.+..+++ ++..++.
T Consensus 75 ~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~----~~til~~th~~~~~~~~~d--~v~~l~~ 142 (144)
T cd03221 75 EKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE-EALKEY----PGTVILVSHDRYFLDQVAT--KIIELED 142 (144)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHc----CCEEEEEECCHHHHHHhCC--EEEEEeC
Confidence 666788888889999999999998888876544332 334333 5799999999999988877 6666554
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=164.18 Aligned_cols=156 Identities=19% Similarity=0.146 Sum_probs=107.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G-----------------------~~vPa~~~ 1065 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+... ...| .|+|+...
T Consensus 17 ~~~l~~~sl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 17 YEALHGISLDF-EEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred eeeeeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 35889999999 78999999999999999999999987530 0112 13333211
Q ss_pred --ccchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 --EISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 --~l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
..++.+.+. ..++.. +.+.....+++ ++.++++.+.+++.+|+++|||||+
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~ 175 (251)
T PRK14251 96 PFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175 (251)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 112222221 112221 11122233455 5666778888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ ..++..+. + +.++|++||+++++..+++ +|.+++.|.++..+
T Consensus 176 ~~LD~~~~~~l-~~~l~~~~-~-~~tiiiisH~~~~~~~~~d--~i~~l~~G~i~~~~ 228 (251)
T PRK14251 176 SALDPISSSEI-EETLMELK-H-QYTFIMVTHNLQQAGRISD--QTAFLMNGDLIEAG 228 (251)
T ss_pred ccCCHHHHHHH-HHHHHHHH-c-CCeEEEEECCHHHHHhhcC--EEEEEECCEEEEeC
Confidence 88888755544 45666664 3 5899999999999888888 88888888887654
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=163.45 Aligned_cols=155 Identities=17% Similarity=0.115 Sum_probs=107.7
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-h---hc-----------------------Cccccccccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-A---QV-----------------------GADVPAEIFE 1066 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-a---q~-----------------------G~~vPa~~~~ 1066 (1288)
.+.+|++|++ .+|++++|+||||+|||||||+|+|+.-. . .. ..|+|+....
T Consensus 17 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14240 17 QALKKINLDI-EENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNP 95 (250)
T ss_pred eeeecceEEE-cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCcc
Confidence 5789999999 78999999999999999999999985321 0 01 1344443211
Q ss_pred --cchHHHHHH----------------------hcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1067 --ISPVDRIFV----------------------RMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1067 --l~~~d~i~~----------------------~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
..+.+.+.. .++.. +.+.....+++ ++.++++.+.+++.+|+++|||||++
T Consensus 96 ~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 175 (250)
T PRK14240 96 FPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTS 175 (250)
T ss_pred CcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 223332211 11110 01122234455 56667888888999999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|.|+.....+ ..++..+. + +.++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 176 ~LD~~~~~~l-~~~l~~~~-~-~~tiii~sH~~~~~~~~~d--~v~~l~~G~i~~~~ 227 (250)
T PRK14240 176 ALDPISTLKI-EELIQELK-K-DYTIVIVTHNMQQASRISD--KTAFFLNGEIVEFG 227 (250)
T ss_pred cCCHHHHHHH-HHHHHHHh-c-CCeEEEEEeCHHHHHhhCC--EEEEEECCEEEEeC
Confidence 8888866654 35666663 3 6899999999999888888 89899888887654
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=163.25 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=107.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------------hhcCcccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------------AQVGADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------------aq~G~~vPa~~~ 1065 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+...|+|+...
T Consensus 16 ~~~l~~i~~~i-~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 16 KKAVKNVTMKI-FKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred ceeEeeeeEee-cCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 46789999999 78999999999999999999999986421 011223443321
Q ss_pred --ccchHHHHH----------------------HhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 --EISPVDRIF----------------------VRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 --~l~~~d~i~----------------------~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
..++.+.+. ..++..+ ........++ ++.++++.+.+++.+|+++|||||+
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~ 174 (250)
T PRK14262 95 PFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 122222221 1111110 1122233455 5566788888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ +.++..+. + ++++|++||+++.+..+++ ++.+++.|.++..|
T Consensus 175 ~~LD~~~~~~l-~~~l~~~~-~-~~tili~sH~~~~~~~~~d--~i~~l~~G~i~~~g 227 (250)
T PRK14262 175 SALDPIATQRI-EKLLEELS-E-NYTIVIVTHNIGQAIRIAD--YIAFMYRGELIEYG 227 (250)
T ss_pred cccCHHHHHHH-HHHHHHHh-c-CcEEEEEeCCHHHHHHhCC--EEEEEECCEEEEec
Confidence 88888865544 45666664 3 5799999999998888888 88888888877654
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.8e-15 Score=180.86 Aligned_cols=156 Identities=15% Similarity=0.082 Sum_probs=110.2
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-------H-h-------------hcCccccccc------cc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------L-A-------------QVGADVPAEI------FE 1066 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-------l-a-------------q~G~~vPa~~------~~ 1066 (1288)
.+..+++|.+ .+|++++|+||||||||||||+|+|+.- + . +.-.|+|+.. ..
T Consensus 267 ~~l~~isl~i-~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 267 GLREPISFSV-RAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred CcccceeEEE-eCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 4788999999 7899999999999999999999998531 0 0 0112444431 01
Q ss_pred cchHHH---------------------------HHHhcCch-hhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1067 ISPVDR---------------------------IFVRMGAK-DHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1067 l~~~d~---------------------------i~~~ig~~-d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
+++.+. ++.+++.. +.......++|+ ++++++.+..++.+|.|||||||++
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~ 425 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTR 425 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence 112222 23334442 233444566774 5556777778899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|.|+.....+ ..++..+.+. |.++|++|||++++..+++ ++.+++.|.++..+
T Consensus 426 ~LD~~~~~~l-~~~l~~l~~~-g~tviivsHd~~~~~~~~d--~i~~l~~g~i~~~~ 478 (501)
T PRK11288 426 GIDVGAKHEI-YNVIYELAAQ-GVAVLFVSSDLPEVLGVAD--RIVVMREGRIAGEL 478 (501)
T ss_pred CCCHhHHHHH-HHHHHHHHhC-CCEEEEECCCHHHHHhhCC--EEEEEECCEEEEEE
Confidence 8888866554 4566677654 8899999999999999998 88888877766544
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=161.25 Aligned_cols=154 Identities=19% Similarity=0.202 Sum_probs=104.4
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccccc--cchHH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIFE--ISPVD 1071 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~~--l~~~d 1071 (1288)
.+.++++|.+ .+|++++|+||||+|||||||+|+|+... ...-.|+|..... ..+.+
T Consensus 17 ~~l~~isl~i-~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 95 (229)
T cd03254 17 PVLKDINFSI-KPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIME 95 (229)
T ss_pred ccccceEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHH
Confidence 5889999999 78999999999999999999999986421 1111344443211 01111
Q ss_pred HH---------------HHhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1072 RI---------------FVRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1072 ~i---------------~~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.+ ...++....+. .....++ ++.++++.+.+++.+|++||||||++|.|+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~ 175 (229)
T cd03254 96 NIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETE 175 (229)
T ss_pred HHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 11 11112211111 1123455 566677888888999999999999999888866
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..+ ..++..+. + +.++|++||+++.+.. ++ ++..++.|.++..+
T Consensus 176 ~~l-~~~l~~~~-~-~~tii~~sh~~~~~~~-~d--~i~~l~~g~~~~~~ 219 (229)
T cd03254 176 KLI-QEALEKLM-K-GRTSIIIAHRLSTIKN-AD--KILVLDDGKIIEEG 219 (229)
T ss_pred HHH-HHHHHHhc-C-CCEEEEEecCHHHHhh-CC--EEEEEeCCeEEEeC
Confidence 654 45666663 3 7899999999998864 66 88888888776544
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.5e-15 Score=183.89 Aligned_cols=158 Identities=18% Similarity=0.152 Sum_probs=112.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hc-------------------------Ccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QV-------------------------GADVPAE 1063 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~-------------------------G~~vPa~ 1063 (1288)
..++++++|++ ..|++++|+||||||||||||+|+|+.-.. .. -.|+|+.
T Consensus 22 ~~~l~~isl~i-~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~ 100 (529)
T PRK15134 22 RTVVNDVSLQI-EAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQE 100 (529)
T ss_pred eeeeeceEEEE-eCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecC
Confidence 36889999999 789999999999999999999999865310 01 1344443
Q ss_pred cc--c---cchHH----------------------HHHHhcCchh---hHhhcccchH-HHHHHHHHHHHhCCCCcEEEE
Q 000778 1064 IF--E---ISPVD----------------------RIFVRMGAKD---HIMAGQSTFL-TELSETALMLSSATRNSLVVL 1112 (1288)
Q Consensus 1064 ~~--~---l~~~d----------------------~i~~~ig~~d---~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLL 1112 (1288)
.. . ..+.+ .++..+|..+ .+....++++ +|.++++.+.+++.+|++|||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llll 180 (529)
T PRK15134 101 PMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIA 180 (529)
T ss_pred chhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 21 0 11111 1222333322 1233445666 455677788888999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1113 DELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1113 DEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|||++|.|+.....+ ..++..+.++.+.++|++||+++.+..+++ +|.+++.|.++..+
T Consensus 181 DEPt~~LD~~~~~~l-~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d--ri~~l~~G~i~~~g 239 (529)
T PRK15134 181 DEPTTALDVSVQAQI-LQLLRELQQELNMGLLFITHNLSIVRKLAD--RVAVMQNGRCVEQN 239 (529)
T ss_pred cCCCCccCHHHHHHH-HHHHHHHHHhcCCeEEEEcCcHHHHHHhcC--EEEEEECCEEEEeC
Confidence 999888888765554 366777765458899999999999998888 89999988876554
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=163.36 Aligned_cols=156 Identities=18% Similarity=0.135 Sum_probs=107.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-h---hcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-A---QVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-a---q~G-----------------------~~vPa~~~ 1065 (1288)
..+++|++|.+ .+|++++|+||||+|||||||+|+|+.-. . ..| .|+|+...
T Consensus 19 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 19 KHALYDITISI-PKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred eeeeeeeEEEE-CCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 46899999999 78999999999999999999999985321 0 012 23333321
Q ss_pred c--cchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 E--ISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~--l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
. .++.+.+. ..++.. +.+......++ ++.++++.+.+++.+|+|+|||||+
T Consensus 98 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 177 (253)
T PRK14261 98 PFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPC 177 (253)
T ss_pred cCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1 12222221 111110 01112223344 5667788888899999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ ..++..+.+ +.++|++||+.+.+..+++ ++.+++.|.++..|
T Consensus 178 ~gLD~~~~~~l-~~~l~~~~~--~~tvii~sh~~~~~~~~~d--~v~~l~~G~i~~~g 230 (253)
T PRK14261 178 SALDPIATAKI-EDLIEDLKK--EYTVIIVTHNMQQAARVSD--YTGFMYLGKLIEFD 230 (253)
T ss_pred ccCCHHHHHHH-HHHHHHHhh--CceEEEEEcCHHHHHhhCC--EEEEEECCEEEEcC
Confidence 99988866655 456666643 5799999999999988888 88899988877655
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-15 Score=182.25 Aligned_cols=157 Identities=13% Similarity=0.127 Sum_probs=111.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-hhcC----------------------cccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-AQVG----------------------ADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-aq~G----------------------~~vPa~~~---~ 1066 (1288)
..++++++|++ .+|++++|+||||||||||||+|+|+... ...| .|||+... .
T Consensus 14 ~~il~~isl~i-~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 14 VKALDGIDLEV-RPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eEeecceEEEE-eCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 46889999999 78999999999999999999999986531 0111 24444321 1
Q ss_pred cchHHHH-------------------------HHhcCchhhH-hhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1067 ISPVDRI-------------------------FVRMGAKDHI-MAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1067 l~~~d~i-------------------------~~~ig~~d~i-~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
+.+.+.+ +..++..+.. .....++|+ +.++++.+.+++.+|+++|||||++|.
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~L 172 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 2222222 2223332211 122456664 555677777889999999999998888
Q ss_pred ChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1120 s~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|+.....+ ..++..+.++ |.++|++||+.+.+..+++ +|.+++.|.++..+
T Consensus 173 D~~~~~~l-~~~l~~l~~~-g~tviiitHd~~~~~~~~d--~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 173 TEKETEIL-LDIIRDLKAH-GVACVYISHKLNEVKAVCD--TICVIRDGQHVATK 223 (500)
T ss_pred CHHHHHHH-HHHHHHHHhC-CCEEEEEeCcHHHHHHhCC--EEEEEeCCeEeeec
Confidence 88865554 4567777654 8899999999999999888 88899888876554
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.6e-15 Score=161.64 Aligned_cols=155 Identities=17% Similarity=0.108 Sum_probs=121.4
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcccccc--------ccccchHHHHHHhcCchh-hHh
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE--------IFEISPVDRIFVRMGAKD-HIM 1084 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~--------~~~l~~~d~i~~~ig~~d-~i~ 1084 (1288)
.+.+||+|++ .+|++++|+|.+||||||+-|+|.++.-. ..|...... ......+..++..+|... .+.
T Consensus 27 ~avd~Vsf~i-~~ge~~glVGESG~GKSTlgr~i~~L~~p-t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ 104 (268)
T COG4608 27 KAVDGVSFSI-KEGETLGLVGESGCGKSTLGRLILGLEEP-TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLY 104 (268)
T ss_pred EEecceeEEE-cCCCEEEEEecCCCCHHHHHHHHHcCcCC-CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhh
Confidence 6889999999 88999999999999999999999986532 223222111 112233455677788654 555
Q ss_pred hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH--HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCc
Q 000778 1085 AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG--QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPR 1161 (1288)
Q Consensus 1085 ~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg--~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~ 1161 (1288)
+....|+ ++.++++.+.+++.+|+|+++||| |+.+|. ++....++..|.++.|.+.||+|||+..+..+++ +
T Consensus 105 ryPhelSGGQrQRi~IARALal~P~liV~DEp---vSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd--r 179 (268)
T COG4608 105 RYPHELSGGQRQRIGIARALALNPKLIVADEP---VSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD--R 179 (268)
T ss_pred cCCcccCchhhhhHHHHHHHhhCCcEEEecCc---hhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc--c
Confidence 6667777 566778888889999999999999 777773 3334478888888889999999999999999999 9
Q ss_pred eEEeeeEEEEecCC
Q 000778 1162 VSLCHMACQVGNGV 1175 (1288)
Q Consensus 1162 v~~~~~~~~~~~g~ 1175 (1288)
|.+|+.|.++..|.
T Consensus 180 i~VMy~G~iVE~g~ 193 (268)
T COG4608 180 IAVMYLGKIVEIGP 193 (268)
T ss_pred EEEEecCceeEecC
Confidence 99999999998774
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.4e-15 Score=185.13 Aligned_cols=158 Identities=11% Similarity=0.103 Sum_probs=115.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------h----------------------------hcC
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------A----------------------------QVG 1057 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------a----------------------------q~G 1057 (1288)
..+++||+|++ .+|++++|+||||||||||||+|+|+.-. . ++
T Consensus 29 ~~~l~~is~~v-~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~i- 106 (623)
T PRK10261 29 IAAVRNLSFSL-QRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADM- 106 (623)
T ss_pred eeEEEeeEEEE-CCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCE-
Confidence 36899999999 78999999999999999999999985310 0 11
Q ss_pred ccccccc-----cccchHHH----------------------HHHhcCchh---hHhhcccchHHHH-HHHHHHHHhCCC
Q 000778 1058 ADVPAEI-----FEISPVDR----------------------IFVRMGAKD---HIMAGQSTFLTEL-SETALMLSSATR 1106 (1288)
Q Consensus 1058 ~~vPa~~-----~~l~~~d~----------------------i~~~ig~~d---~i~~~~Stf~~e~-~~~~~il~~a~~ 1106 (1288)
.+|++.. ..+++.+. ++..+|..+ .+.....++|++| ++++.+.+++.+
T Consensus 107 g~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~ 186 (623)
T PRK10261 107 AMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCR 186 (623)
T ss_pred EEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCC
Confidence 2444432 11222222 233444421 2344556677544 567777888999
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1107 NSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1107 ~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|+|||||||++|.|+.....+ ..++..+.++.|+++|++||+++++..+++ +|.+++.|.++..|.
T Consensus 187 P~lLllDEPt~~LD~~~~~~l-~~ll~~l~~~~g~tvi~itHdl~~~~~~ad--ri~vl~~G~i~~~g~ 252 (623)
T PRK10261 187 PAVLIADEPTTALDVTIQAQI-LQLIKVLQKEMSMGVIFITHDMGVVAEIAD--RVLVMYQGEAVETGS 252 (623)
T ss_pred CCEEEEeCCCCccCHHHHHHH-HHHHHHHHHhcCCEEEEEcCCHHHHHHhCC--EEEEeeCCeecccCC
Confidence 999999999888888755544 467778866568999999999999999998 999999999887653
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=181.02 Aligned_cols=158 Identities=13% Similarity=0.108 Sum_probs=112.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-------H--h------------------hcCcccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------L--A------------------QVGADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-------l--a------------------q~G~~vPa~~~ 1065 (1288)
..+.++++|.+ .+|++++|+||||||||||||+|+|+.- + . +.-.|+|+...
T Consensus 297 ~~il~~is~~i-~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 297 VKAVDNVSLEV-KEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred ceEEeeEEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence 35899999999 7899999999999999999999998631 1 0 00124454321
Q ss_pred ---ccchHHHH--------------------HHhcCchh-----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 ---EISPVDRI--------------------FVRMGAKD-----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ---~l~~~d~i--------------------~~~ig~~d-----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
.+.+.+.+ +..+|..+ .+.....++| ++.++++.+.+++.+|+|||||||+
T Consensus 376 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt 455 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPT 455 (520)
T ss_pred cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 12222222 23334322 2333445666 4556677888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+. .++..+.++.|.++|++||+++++..+++ ++.+++.|.++..+
T Consensus 456 ~~LD~~~~~~l~-~~l~~l~~~~g~tvi~vsHd~~~~~~~~d--~i~~l~~G~i~~~g 510 (520)
T TIGR03269 456 GTMDPITKVDVT-HSILKAREEMEQTFIIVSHDMDFVLDVCD--RAALMRDGKIVKIG 510 (520)
T ss_pred ccCCHHHHHHHH-HHHHHHHHHcCcEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEC
Confidence 888888665544 56666655558899999999999999888 88888888877654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=161.76 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=104.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~--~l~~~ 1070 (1288)
..+.+|++|.+ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|.... ...+.
T Consensus 14 ~~~l~~i~~~i-~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 92 (236)
T cd03253 14 RPVLKDVSFTI-PAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIG 92 (236)
T ss_pred CceeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHH
Confidence 35788999998 78999999999999999999999986421 011123443321 11112
Q ss_pred HHH---------------HHhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.+ ....+..+.+. .....++ ++.++++.+.+++.+|++||||||++|.|+..
T Consensus 93 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~ 172 (236)
T cd03253 93 YNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172 (236)
T ss_pred HHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 211 11112221111 1123455 56667888888999999999999999988876
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+. .++..+. + +.++|++||+.+.+.. ++ ++..++.|.++..+
T Consensus 173 ~~~l~-~~l~~~~-~-~~tiii~sh~~~~~~~-~d--~~~~l~~g~i~~~~ 217 (236)
T cd03253 173 EREIQ-AALRDVS-K-GRTTIVIAHRLSTIVN-AD--KIIVLKDGRIVERG 217 (236)
T ss_pred HHHHH-HHHHHhc-C-CCEEEEEcCCHHHHHh-CC--EEEEEECCEEEeeC
Confidence 55444 5566664 4 7899999999998865 66 88888888776543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=162.53 Aligned_cols=156 Identities=17% Similarity=0.128 Sum_probs=107.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh----cC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ----VG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq----~G-----------------------~~vPa~~~ 1065 (1288)
..++++++|.+ .+|++++|+||||+||||||++|+|+.-... .| .|+|+...
T Consensus 17 ~~il~~~s~~i-~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (251)
T PRK14249 17 HQVLKNINMDF-PERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN 95 (251)
T ss_pred eeEecceEEEE-cCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc
Confidence 35789999998 7899999999999999999999998643210 12 23333321
Q ss_pred c--cchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 E--ISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~--l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
. ..+.+.+. ..++.. +.+......++ ++.++++.+.+++.+|+++|||||+
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 175 (251)
T PRK14249 96 PFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175 (251)
T ss_pred cCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 12222221 111111 11122233444 5667788888899999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ ..++..+. + ++++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 176 ~~LD~~~~~~l-~~~l~~~~-~-~~tilivsh~~~~~~~~~d--~i~~l~~G~i~~~~ 228 (251)
T PRK14249 176 SALDPVSTMRI-EELMQELK-Q-NYTIAIVTHNMQQAARASD--WTGFLLTGDLVEYG 228 (251)
T ss_pred ccCCHHHHHHH-HHHHHHHh-c-CCEEEEEeCCHHHHHhhCC--EEEEEeCCeEEEeC
Confidence 88888866654 35666663 3 7899999999999999888 88888888876654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-14 Score=184.39 Aligned_cols=159 Identities=16% Similarity=0.089 Sum_probs=115.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCccccccc-----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEI----- 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~----- 1064 (1288)
..+.++++|++ .+|++++|+||||||||||+|+|+|+.-. ...-.|||+..
T Consensus 337 ~~~l~~vs~~i-~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~ 415 (623)
T PRK10261 337 VHAVEKVSFDL-WPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLD 415 (623)
T ss_pred eEEEeeeEeEE-cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcC
Confidence 35889999999 78999999999999999999999986310 01123555542
Q ss_pred cccchHHH----------------------HHHhcCch-hhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1065 FEISPVDR----------------------IFVRMGAK-DHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1065 ~~l~~~d~----------------------i~~~ig~~-d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
..+.+.+. ++..+|.. +........+|+ +.++++.+.+++.+|+|||||||++|.|
T Consensus 416 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD 495 (623)
T PRK10261 416 PRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495 (623)
T ss_pred CCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 11222222 23334443 233444566775 4456777788899999999999988888
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.....+ ..+|..+.++.|.++||+|||++++..+++ +|.+++.|.++..|.
T Consensus 496 ~~~~~~i-~~ll~~l~~~~g~tvi~isHdl~~v~~~~d--ri~vl~~G~iv~~g~ 547 (623)
T PRK10261 496 VSIRGQI-INLLLDLQRDFGIAYLFISHDMAVVERISH--RVAVMYLGQIVEIGP 547 (623)
T ss_pred HHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEecC
Confidence 7755544 466767766558899999999999999998 899999999887663
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=163.58 Aligned_cols=156 Identities=16% Similarity=0.112 Sum_probs=105.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G-----------------------~~vPa~~~ 1065 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. ...| .|+|+...
T Consensus 23 ~~il~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 101 (264)
T PRK14243 23 FLAVKNVWLDI-PKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN 101 (264)
T ss_pred EEEeecceEEE-cCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc
Confidence 36789999999 78999999999999999999999986421 1112 22333211
Q ss_pred c--cchHHHHH--------------------HhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1066 E--ISPVDRIF--------------------VRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1066 ~--l~~~d~i~--------------------~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
. .++.+.+. ..++..+ ........++ ++.++++.+.+++.+|++||||||++|
T Consensus 102 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 181 (264)
T PRK14243 102 PFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA 181 (264)
T ss_pred cccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 0 12222221 1111110 1111223355 456677888888999999999999998
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee---------eEEEEecC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH---------MACQVGNG 1174 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~---------~~~~~~~g 1174 (1288)
.|+.....+ ..++..+.+ +.++|++||+.+.+..+++ +|.+++ .|.++..+
T Consensus 182 LD~~~~~~l-~~~L~~~~~--~~tvi~vtH~~~~~~~~~d--~v~~l~~~~~~~~~~~g~i~~~~ 241 (264)
T PRK14243 182 LDPISTLRI-EELMHELKE--QYTIIIVTHNMQQAARVSD--MTAFFNVELTEGGGRYGYLVEFD 241 (264)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCEEEEEecCHHHHHHhCC--EEEEEecccccccccCceEEEeC
Confidence 888866654 466666644 4799999999999999998 888887 56666554
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=164.12 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=107.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-------------------HhhcCcccccccccc--chHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------LAQVGADVPAEIFEI--SPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-------------------laq~G~~vPa~~~~l--~~~d 1071 (1288)
..+++|++|.+ .+|++++|+||||+||||||++|+++.- +.+...++|+...-+ ++.+
T Consensus 17 ~~~l~~isl~I-~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~ 95 (275)
T cd03289 17 NAVLENISFSI-SPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRK 95 (275)
T ss_pred CcceeceEEEE-cCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHH
Confidence 46889999999 7899999999999999999999998641 111224555543211 1112
Q ss_pred H--------------HHHhcCchhhHhhccc-----------chHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1072 R--------------IFVRMGAKDHIMAGQS-----------TFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1072 ~--------------i~~~ig~~d~i~~~~S-----------tf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
. .+..+|..+.+..... .|++ +.++++.+.+++.+|+++|||||++|.|+....
T Consensus 96 nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~ 175 (275)
T cd03289 96 NLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQ 175 (275)
T ss_pred HhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHH
Confidence 2 2233444443333222 2664 555677777889999999999998888888655
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.+. .++..+. .++|+|++||+++.+.. ++ +|.+++.|.++..|
T Consensus 176 ~l~-~~l~~~~--~~~tii~isH~~~~i~~-~d--ri~vl~~G~i~~~g 218 (275)
T cd03289 176 VIR-KTLKQAF--ADCTVILSEHRIEAMLE-CQ--RFLVIEENKVRQYD 218 (275)
T ss_pred HHH-HHHHHhc--CCCEEEEEECCHHHHHh-CC--EEEEecCCeEeecC
Confidence 444 4444442 37999999999998765 66 89999988887765
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=150.81 Aligned_cols=160 Identities=18% Similarity=0.167 Sum_probs=117.7
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCc-------------
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGA------------- 1058 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~------------- 1058 (1288)
++.|.+|+++.+ ++|.+..|+||||+||||||.+++.+.- +|+.-+
T Consensus 13 ~~~vl~~isl~i-~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlT 91 (252)
T COG4604 13 TKVVLDDVSLDI-PKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT 91 (252)
T ss_pred CEEeeccceeee-cCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeE
Confidence 478999999999 7899999999999999999999987441 122111
Q ss_pred --------cccccccccch-----HHHHHHhcCchhhHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChHHH
Q 000778 1059 --------DVPAEIFEISP-----VDRIFVRMGAKDHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1059 --------~vPa~~~~l~~-----~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~-~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
..|-...++.- +++-+.-+...+--.+.+..++++.++.+.|.. +|.+.+.|+||||-...|..-.
T Consensus 92 V~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHs 171 (252)
T COG4604 92 VRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171 (252)
T ss_pred HHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHH
Confidence 11333333332 223334445555555556667777777666654 6899999999999555555545
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+ +.+|+.++++.|.|+++|-||.++|..+++ .|+-+..|.++..|.
T Consensus 172 v~i-Mk~Lrrla~el~KtiviVlHDINfAS~YsD--~IVAlK~G~vv~~G~ 219 (252)
T COG4604 172 VQI-MKILRRLADELGKTIVVVLHDINFASCYSD--HIVALKNGKVVKQGS 219 (252)
T ss_pred HHH-HHHHHHHHHHhCCeEEEEEecccHHHhhhh--heeeecCCEEEecCC
Confidence 544 478899999999999999999999999998 899999999988775
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-15 Score=182.11 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=108.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhc----------------------Ccccccccc---c-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQV----------------------GADVPAEIF---E- 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~----------------------G~~vPa~~~---~- 1066 (1288)
..+.++++|.+ .+|++++|+||||||||||||+|+|+...... -.|+|+... .
T Consensus 273 ~~il~~vsl~i-~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 351 (490)
T PRK10938 273 RPILHNLSWQV-NPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRV 351 (490)
T ss_pred eeEEeeceEEE-cCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhccc
Confidence 45899999999 78999999999999999999999985321001 123332210 0
Q ss_pred -cch-------------------------HHHHHHhcCchh-hHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1067 -ISP-------------------------VDRIFVRMGAKD-HIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1067 -l~~-------------------------~d~i~~~ig~~d-~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
..+ +..++..+|..+ ......+++|+ +.++++.+.+++.+|+|||||||++|
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~g 431 (490)
T PRK10938 352 STSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQG 431 (490)
T ss_pred CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 000 112233344433 33344456664 55567777888999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh-hcCCCceEEeeeEEEEec
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD-YKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~-~~~~~~v~~~~~~~~~~~ 1173 (1288)
.|+.....+. .+|..+.++.++++|++||+.+++.. +++ ++.+++.|.++..
T Consensus 432 LD~~~~~~l~-~~L~~l~~~~~~tviivsHd~~~~~~~~~d--~v~~l~~G~i~~~ 484 (490)
T PRK10938 432 LDPLNRQLVR-RFVDVLISEGETQLLFVSHHAEDAPACITH--RLEFVPDGDIYRY 484 (490)
T ss_pred CCHHHHHHHH-HHHHHHHhcCCcEEEEEecchhhhhhhhhe--eEEEecCCceEEe
Confidence 8888666554 66666766534579999999999876 466 8888888876653
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=158.39 Aligned_cols=140 Identities=14% Similarity=0.104 Sum_probs=97.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------hhcCcccccccc---ccchHHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------AQVGADVPAEIF---EISPVDR 1072 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------aq~G~~vPa~~~---~l~~~d~ 1072 (1288)
..+.++++|.+ .+|++++|+||||+||||||++|+|+... ....+|++.... ..++.+.
T Consensus 15 ~~~l~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~ 93 (207)
T PRK13539 15 RVLFSGLSFTL-AAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAEN 93 (207)
T ss_pred eEEEeceEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHH
Confidence 46889999999 78999999999999999999999986411 011124443221 1222222
Q ss_pred -----------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 000778 1073 -----------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1073 -----------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~ 1134 (1288)
++..+|..+........++ ++.++++.+.+++.+|+|||||||++|.|+.....+ +.++..
T Consensus 94 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~~ 172 (207)
T PRK13539 94 LEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALF-AELIRA 172 (207)
T ss_pred HHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHH
Confidence 2333444433333445566 455677888888999999999999888888866654 466666
Q ss_pred HHhccCcEEEEEcCCchhhhh
Q 000778 1135 FVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1135 l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
+.++ ++++|++||+++.+..
T Consensus 173 ~~~~-~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 173 HLAQ-GGIVIAATHIPLGLPG 192 (207)
T ss_pred HHHC-CCEEEEEeCCchhhcc
Confidence 6554 8899999999988765
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=168.49 Aligned_cols=173 Identities=14% Similarity=0.115 Sum_probs=119.9
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------ 1053 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------ 1053 (1288)
..|.+++...-+-. ....++++++|++ .+|++++|+|||||||||||++|+++.-.
T Consensus 79 ~~i~~~nls~~y~~-----~~~~~L~~is~~I-~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----RTKHVLHDLNLDI-KRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred ceEEEEeeEEEecC-----CCceeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 45777766543311 1246899999999 78999999999999999999999986521
Q ss_pred ---------hhcCcccccccc--ccchHHHHH----------------------HhcCc----hhhHhhcccchH-HHHH
Q 000778 1054 ---------AQVGADVPAEIF--EISPVDRIF----------------------VRMGA----KDHIMAGQSTFL-TELS 1095 (1288)
Q Consensus 1054 ---------aq~G~~vPa~~~--~l~~~d~i~----------------------~~ig~----~d~i~~~~Stf~-~e~~ 1095 (1288)
.+.-.|||+... ..++.+.+. ...+. ...+......++ ++.+
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq 232 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ 232 (329)
T ss_pred ccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH
Confidence 111234554421 122223321 11111 112223345565 5666
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1096 ~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+++.+.+++.+|++||||||++|.|+..... ...++..+.+ ++|+|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~-i~~~i~~l~~--~~Tii~iTH~l~~i~~~~D--riivl~~G~i~e~g~ 307 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAK-IEELILELKK--KYSIIIVTHSMAQAQRISD--ETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHH-HHHHHHHHhc--CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEeCC
Confidence 7788888899999999999988888876555 4456666643 6899999999999998888 999999999988764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=161.96 Aligned_cols=156 Identities=17% Similarity=0.219 Sum_probs=108.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~G-----------------------~~vPa~~~ 1065 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+.-.. ..| .|+|+...
T Consensus 17 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 17 KQAVKNVNLDV-QRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred EEeeccceEEE-cCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 46889999999 789999999999999999999999964210 011 23343321
Q ss_pred ---ccchHHHHHH--h-cC--ch---------------------hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1066 ---EISPVDRIFV--R-MG--AK---------------------DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1066 ---~l~~~d~i~~--~-ig--~~---------------------d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
.+++.+.+.. . .+ .. +......+.++ ++.++++.+.+++.+|+|+|||||
T Consensus 96 ~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (252)
T PRK14272 96 PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEP 175 (252)
T ss_pred cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1233333311 0 01 00 01112234455 566678888889999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
++|.|+.....+ ..+++.+. + ++++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 176 ~~~LD~~~~~~l-~~~l~~~~-~-~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 229 (252)
T PRK14272 176 TSALDPASTARI-EDLMTDLK-K-VTTIIIVTHNMHQAARVSD--TTSFFLVGDLVEHG 229 (252)
T ss_pred CccCCHHHHHHH-HHHHHHHh-c-CCeEEEEeCCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 888888755544 45666664 3 6899999999999988888 89999988887655
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-14 Score=147.52 Aligned_cols=158 Identities=17% Similarity=0.185 Sum_probs=114.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH----------------HhhcCccccccccc-------cch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------LAQVGADVPAEIFE-------ISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i----------------laq~G~~vPa~~~~-------l~~ 1069 (1288)
.-|+.+|+|.. ..|+++.|+|.+|||||||||+|..+-- ....|..+|++.-. +++
T Consensus 19 ~eVLKGvSL~A-~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~m 97 (256)
T COG4598 19 HEVLKGVSLQA-NAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGM 97 (256)
T ss_pred chhhcceeeec-CCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhH
Confidence 46888999998 7899999999999999999999986431 12234455554311 111
Q ss_pred H-----------------------------------HHHHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEe
Q 000778 1070 V-----------------------------------DRIFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLD 1113 (1288)
Q Consensus 1070 ~-----------------------------------d~i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLD 1113 (1288)
+ ..++.++|..+........+++ +.++.+.+.++|..|.++|+|
T Consensus 98 VFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFD 177 (256)
T COG4598 98 VFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFD 177 (256)
T ss_pred hhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeec
Confidence 1 1234455555555545555564 455677777889999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1114 ELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1114 Epg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
||++..||.-.-. ...++..|+++ |.|.+++||.+.++..... .|+++|.|.+...|.
T Consensus 178 EPTSALDPElVgE-VLkv~~~LAeE-grTMv~VTHEM~FAR~Vss--~v~fLh~G~iEE~G~ 235 (256)
T COG4598 178 EPTSALDPELVGE-VLKVMQDLAEE-GRTMVVVTHEMGFARDVSS--HVIFLHQGKIEEEGP 235 (256)
T ss_pred CCcccCCHHHHHH-HHHHHHHHHHh-CCeEEEEeeehhHHHhhhh--heEEeecceecccCC
Confidence 9966666653222 34688888876 8999999999999999988 899999999887764
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.5e-15 Score=183.38 Aligned_cols=150 Identities=15% Similarity=0.085 Sum_probs=111.2
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh-------hcCcccccccc---ccch--------------
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA-------QVGADVPAEIF---EISP-------------- 1069 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila-------q~G~~vPa~~~---~l~~-------------- 1069 (1288)
+.+++++|.+ .+|++++|+||||+|||||||+|+|+.-.. ..-.|+|+... .+++
T Consensus 353 ~~l~~~s~~i-~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~ 431 (590)
T PRK13409 353 FSLEVEGGEI-YEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSS 431 (590)
T ss_pred EEEEecceEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChH
Confidence 4578888888 789999999999999999999999864210 01134554321 1111
Q ss_pred --HHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEE
Q 000778 1070 --VDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFS 1146 (1288)
Q Consensus 1070 --~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~ 1146 (1288)
...++.+++..+......+++| +|+++++.+..++.+|+|+|||||++|.|+.....+. .++..++++.+.++|++
T Consensus 432 ~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviiv 510 (590)
T PRK13409 432 YYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVA-KAIRRIAEEREATALVV 510 (590)
T ss_pred HHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE
Confidence 2334556666666666677787 5666788888899999999999998888888666554 66777766558899999
Q ss_pred cCCchhhhhhcCCCceEEeee
Q 000778 1147 THYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1147 TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
|||++++..+++ +|.+++.
T Consensus 511 sHD~~~~~~~aD--rvivl~~ 529 (590)
T PRK13409 511 DHDIYMIDYISD--RLMVFEG 529 (590)
T ss_pred eCCHHHHHHhCC--EEEEEcC
Confidence 999999999988 7777754
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=162.10 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=107.0
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hcC-----------------------cccccccc-
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QVG-----------------------ADVPAEIF- 1065 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~G-----------------------~~vPa~~~- 1065 (1288)
.++++++|.+ .+|++++|+||||+||||||++|+|+.-.. ..| .|+|....
T Consensus 21 ~il~~is~~i-~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l 99 (261)
T PRK14258 21 KILEGVSMEI-YQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNL 99 (261)
T ss_pred eEeeceEEEE-cCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCcc
Confidence 5789999999 789999999999999999999999975321 012 12232211
Q ss_pred -ccchHHHHH----------------------HhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1066 -EISPVDRIF----------------------VRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1066 -~l~~~d~i~----------------------~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
...+.+.+. ..++..+ .+......++ ++.++++.+..++.+|+++|||||++
T Consensus 100 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~ 179 (261)
T PRK14258 100 FPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCF 179 (261)
T ss_pred CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 112222221 1111100 1112223455 45566778888899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee-----EEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM-----ACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~-----~~~~~~g 1174 (1288)
|.|+.....+ ..++..+....+.++|++||+++++..+++ +|.+++. |.++..+
T Consensus 180 ~LD~~~~~~l-~~~l~~l~~~~~~tiiivsH~~~~i~~~~d--~i~~l~~~~~~~G~i~~~~ 238 (261)
T PRK14258 180 GLDPIASMKV-ESLIQSLRLRSELTMVIVSHNLHQVSRLSD--FTAFFKGNENRIGQLVEFG 238 (261)
T ss_pred cCCHHHHHHH-HHHHHHHHHhCCCEEEEEECCHHHHHHhcC--EEEEEccCCCcCceEEEeC
Confidence 8887755443 455555644347899999999999999998 8888887 8777655
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-14 Score=153.05 Aligned_cols=172 Identities=22% Similarity=0.210 Sum_probs=115.8
Q ss_pred eEEEecCCCCccccccCCCC-cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--------------------
Q 000778 993 YISAKSLGHPVLRSDSLGKG-EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------------- 1051 (1288)
Q Consensus 993 ~l~i~~~rHP~l~~~~l~~~-~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~-------------------- 1051 (1288)
.|+|++. |--++ + +.|+++++|++ ..|++.+|+||||||||||.++|+|.-
T Consensus 3 ~L~I~dL-hv~v~------~~keILkgvnL~v-~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 3 MLEIKDL-HVEVE------GKKEILKGVNLTV-KEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74 (251)
T ss_pred eeEEeee-EEEec------CchhhhcCcceeE-cCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC
Confidence 4666665 33222 2 48999999999 789999999999999999999999831
Q ss_pred --HHhhcCccc----cccccccchHHH------------------------HHHhcCchh-hHhhcc-cchHHHHHHHHH
Q 000778 1052 --ILAQVGADV----PAEIFEISPVDR------------------------IFVRMGAKD-HIMAGQ-STFLTELSETAL 1099 (1288)
Q Consensus 1052 --ilaq~G~~v----Pa~~~~l~~~d~------------------------i~~~ig~~d-~i~~~~-Stf~~e~~~~~~ 1099 (1288)
--|..|.|+ |.+-.-+...+- ....++... .+.+.. -.||+.-+....
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~E 154 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNE 154 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHH
Confidence 236777776 332222221111 122222222 111111 245643333444
Q ss_pred HHH-hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1100 MLS-SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1100 il~-~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|+. ++.+|+|+|||||-+|.|-- +..+....++.+... +..+|++|||..++.+.. ...|.++..|+++..|.
T Consensus 155 ilQ~~~lePkl~ILDE~DSGLDId-alk~V~~~i~~lr~~-~~~~liITHy~rll~~i~-pD~vhvl~~GrIv~sG~ 228 (251)
T COG0396 155 ILQLLLLEPKLAILDEPDSGLDID-ALKIVAEGINALREE-GRGVLIITHYQRLLDYIK-PDKVHVLYDGRIVKSGD 228 (251)
T ss_pred HHHHHhcCCCEEEecCCCcCccHH-HHHHHHHHHHHHhcC-CCeEEEEecHHHHHhhcC-CCEEEEEECCEEEecCC
Confidence 444 46899999999999998854 555556778888665 889999999999988765 23788889999998774
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-14 Score=163.41 Aligned_cols=156 Identities=14% Similarity=0.160 Sum_probs=107.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G-----------------------~~vPa~~~ 1065 (1288)
..+.++++|++ .+|++++|+|+||+|||||||+|+|+..+ ...| .|+|+...
T Consensus 37 ~~il~~vsl~i-~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 115 (271)
T PRK14238 37 DHALKNINLDI-HENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN 115 (271)
T ss_pred cceeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc
Confidence 35889999999 78999999999999999999999986531 1122 23333321
Q ss_pred c--cchHHHHHH--hc-Cc-----------------------hhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 E--ISPVDRIFV--RM-GA-----------------------KDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~--l~~~d~i~~--~i-g~-----------------------~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
. ..+.+.+.- +. +. .+.+......++ ++.++++.+..++.+|+++|||||+
T Consensus 116 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt 195 (271)
T PRK14238 116 PFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPT 195 (271)
T ss_pred cccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 1 122333210 00 10 011112233455 5666778888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+. .++..+.+ +.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 196 ~~LD~~~~~~l~-~~l~~~~~--~~tiiivsH~~~~i~~~~d--~i~~l~~G~i~~~g 248 (271)
T PRK14238 196 SALDPISTLKVE-ELVQELKK--DYSIIIVTHNMQQAARISD--KTAFFLNGYVNEYD 248 (271)
T ss_pred CcCCHHHHHHHH-HHHHHHHc--CCEEEEEEcCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 888888665544 56666643 6899999999999988888 88899999887655
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-14 Score=157.29 Aligned_cols=154 Identities=13% Similarity=0.057 Sum_probs=104.7
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccccc--cchHH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIFE--ISPVD 1071 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~~--l~~~d 1071 (1288)
.+.++++|.+ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+...- ..+.+
T Consensus 22 ~~l~~isl~i-~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ 100 (207)
T cd03369 22 PVLKNVSFKV-KAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRS 100 (207)
T ss_pred ccccCceEEE-CCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHH
Confidence 6889999999 78999999999999999999999986411 1112344443211 12222
Q ss_pred HHH--HhcCch---hh--HhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEE
Q 000778 1072 RIF--VRMGAK---DH--IMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRG 1143 (1288)
Q Consensus 1072 ~i~--~~ig~~---d~--i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~v 1143 (1288)
.+. ...... +. +......++ ++.++++.+.+++.+|+++|||||++|.|+..... .+.++..+. . +.++
T Consensus 101 ~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~-l~~~l~~~~-~-~~ti 177 (207)
T cd03369 101 NLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL-IQKTIREEF-T-NSTI 177 (207)
T ss_pred HhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHH-HHHHHHHhc-C-CCEE
Confidence 220 000000 00 122334455 56777888888999999999999988888876554 345666653 3 7899
Q ss_pred EEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1144 LFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1144 l~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|++||+.+++.. ++ ++.+++.|.++..|
T Consensus 178 ii~th~~~~~~~-~d--~v~~l~~g~i~~~g 205 (207)
T cd03369 178 LTIAHRLRTIID-YD--KILVMDAGEVKEYD 205 (207)
T ss_pred EEEeCCHHHHhh-CC--EEEEEECCEEEecC
Confidence 999999998865 66 88888888776543
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-14 Score=173.35 Aligned_cols=148 Identities=20% Similarity=0.162 Sum_probs=103.8
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------hhcC---cccccccc---ccchHHH-------
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------AQVG---ADVPAEIF---EISPVDR------- 1072 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------aq~G---~~vPa~~~---~l~~~d~------- 1072 (1288)
++.+.++++|.+ .+|+.++|+|+||+|||||||+|+|.... ...| .++++... ...+++.
T Consensus 15 ~~~l~~~~~l~~-~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~ 93 (530)
T COG0488 15 DRPLLENVSLTL-NPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGE 93 (530)
T ss_pred CceeecCCccee-CCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHH
Confidence 467889999999 78999999999999999999999984411 1111 12333221 1112221
Q ss_pred --------------------------------------------HHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCC
Q 000778 1073 --------------------------------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRN 1107 (1288)
Q Consensus 1073 --------------------------------------------i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~ 1107 (1288)
++..+|..+. ....+++++ +..+++.+..+..+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~p 172 (530)
T COG0488 94 LRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEP 172 (530)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCC
Confidence 1222233322 345577774 555677777889999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1108 SLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1108 sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
++|||||| |+++|..+|.| |+.+......++|+||||.++....++ .|.-++.|
T Consensus 173 DlLLLDEP---TNHLD~~~i~W--Le~~L~~~~gtviiVSHDR~FLd~V~t--~I~~ld~g 226 (530)
T COG0488 173 DLLLLDEP---TNHLDLESIEW--LEDYLKRYPGTVIVVSHDRYFLDNVAT--HILELDRG 226 (530)
T ss_pred CEEEEcCC---CcccCHHHHHH--HHHHHHhCCCcEEEEeCCHHHHHHHhh--heEEecCC
Confidence 99999999 99999999987 554444445599999999999999988 66666555
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=152.22 Aligned_cols=140 Identities=21% Similarity=0.254 Sum_probs=94.0
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCc-cccccccccchHHHHHHhcCchhhHhhcccchH-
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA-DVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFL- 1091 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~-~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~- 1091 (1288)
.+.++++|.+ .+|++++|+||||+||||||++|+++... ..|. ++......-.....+...++.- ..++
T Consensus 13 ~~l~~~~~~i-~~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~~~~~~~~~~~~~i~~~-------~qlS~ 83 (157)
T cd00267 13 TALDNVSLTL-KAGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKDIAKLPLEELRRRIGYV-------PQLSG 83 (157)
T ss_pred eeEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEEcccCCHHHHHhceEEE-------eeCCH
Confidence 5778888988 78999999999999999999999986432 2221 1111100000001111111110 0144
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee
Q 000778 1092 TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH 1166 (1288)
Q Consensus 1092 ~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~ 1166 (1288)
+|.++++.+.+++.+|+++|||||++|+|......+. .++..+... ++++|++||+++.+..+++ ++..++
T Consensus 84 G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~-~~l~~~~~~-~~tii~~sh~~~~~~~~~d--~i~~l~ 154 (157)
T cd00267 84 GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLL-ELLRELAEE-GRTVIIVTHDPELAELAAD--RVIVLK 154 (157)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEe
Confidence 5666777888889999999999999999987655544 555556554 6899999999999988877 555443
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-14 Score=162.43 Aligned_cols=171 Identities=17% Similarity=0.098 Sum_probs=115.3
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC----------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG---------- 1057 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G---------- 1057 (1288)
+.|.+++....+ .+..+.++++|.+ .+|++++|+||||+|||||+|+|+|+.-. ...|
T Consensus 24 ~~l~~~nl~~~~-------~~~~il~~vs~~i-~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 24 TALEVRNLNLFY-------GDKQALFDISMRI-PKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred cEEEEEEEEEEE-------CCeeEeeeEEEEE-cCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 456666554322 1246889999999 78999999999999999999999986421 0112
Q ss_pred -------------ccccccccc--cchHHHHH----------------------HhcCchh----hHhhcccchH-HHHH
Q 000778 1058 -------------ADVPAEIFE--ISPVDRIF----------------------VRMGAKD----HIMAGQSTFL-TELS 1095 (1288)
Q Consensus 1058 -------------~~vPa~~~~--l~~~d~i~----------------------~~ig~~d----~i~~~~Stf~-~e~~ 1095 (1288)
.|+|+.... .++.+.+. ..++..+ .+......++ ++.+
T Consensus 96 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 96 DKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQ 175 (272)
T ss_pred ccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHH
Confidence 244433211 12233321 1111110 0111223344 5666
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1096 ~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+++.+.+++.+|+++|||||++|.|+.....+ +.++..+.+ +.++|++||+++.+..+++ ++.+++.|.++..+.
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l-~~~L~~~~~--~~tiiivtH~~~~~~~~~d--~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKI-EELITELKS--KYTIVIVTHNMQQAARVSD--YTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHh--CCeEEEEeCCHHHHHhhCC--EEEEEECCEEEecCC
Confidence 78888889999999999999999988855544 466666643 5799999999999988888 899999998877653
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=161.32 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=107.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-h---hcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-A---QVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-a---q~G-----------------------~~vPa~~~ 1065 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+.-. . +.| .|+|+...
T Consensus 18 ~~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (252)
T PRK14255 18 FEALKGIDLDF-NQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96 (252)
T ss_pred eeEEecceEEE-cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence 46889999999 78999999999999999999999986320 0 111 23444321
Q ss_pred c--cchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 E--ISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~--l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
. ..+.+.+. .+++.. +........++ ++.++++.+++++.+|+++|||||+
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 176 (252)
T PRK14255 97 PFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT 176 (252)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1 12222221 011110 11122233455 5556778888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+. .+|..+.+ +.++|++||+.+.+..+++ +|.+++.|.++..+
T Consensus 177 ~~LD~~~~~~l~-~~l~~~~~--~~tii~vsH~~~~~~~~~d--~i~~l~~G~i~~~~ 229 (252)
T PRK14255 177 SALDPISSTQIE-NMLLELRD--QYTIILVTHSMHQASRISD--KTAFFLTGNLIEFA 229 (252)
T ss_pred ccCCHHHHHHHH-HHHHHHHh--CCEEEEEECCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 888887666554 56666644 4799999999999988888 88899888877654
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-14 Score=159.52 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=97.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------h------------------hcCccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------A------------------QVGADVPAEI 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------a------------------q~G~~vPa~~ 1064 (1288)
..+..+++|.+ .+|++++|+||||+|||||||+|+|+.-. . +...|+|+..
T Consensus 21 ~~il~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 99 (224)
T TIGR02324 21 LPVLKNVSLTV-NAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFL 99 (224)
T ss_pred eEEEecceEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccc
Confidence 36889999999 78999999999999999999999986311 0 0112444432
Q ss_pred cc---cchHHH---------------------HHHhcCchhhH-hhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1065 FE---ISPVDR---------------------IFVRMGAKDHI-MAGQSTFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1065 ~~---l~~~d~---------------------i~~~ig~~d~i-~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
.. +.+.+. ++..+|..+.+ ......++ ++.++++.+.+++.+|+++|||||++|
T Consensus 100 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 179 (224)
T TIGR02324 100 RVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTAS 179 (224)
T ss_pred ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 11 111111 12223332221 22334455 556677888888999999999999888
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
.|+.....+. .++..+.++ ++++|++||+.+++..+++
T Consensus 180 LD~~~~~~l~-~~l~~~~~~-g~tii~vsH~~~~~~~~~d 217 (224)
T TIGR02324 180 LDAANRQVVV-ELIAEAKAR-GAALIGIFHDEEVRELVAD 217 (224)
T ss_pred CCHHHHHHHH-HHHHHHHhc-CCEEEEEeCCHHHHHHhcc
Confidence 8888666544 566666554 8899999999999887777
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=160.71 Aligned_cols=148 Identities=16% Similarity=0.121 Sum_probs=99.9
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccccc--cchHH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIFE--ISPVD 1071 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~~--l~~~d 1071 (1288)
.+.++++|.+ .+|++++|+||||+|||||+++|+|+.-. .+.-.|+|+.... ..+.+
T Consensus 28 ~~l~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~ 106 (226)
T cd03248 28 LVLQDVSFTL-HPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQD 106 (226)
T ss_pred ccccceEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHH
Confidence 5899999999 78999999999999999999999986411 0111234433210 11111
Q ss_pred HH------------------------HHhc--CchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1072 RI------------------------FVRM--GAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1072 ~i------------------------~~~i--g~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.+ +..+ |....+......++ ++.++++.+.+++.+|+++|||||++|.|+...
T Consensus 107 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 186 (226)
T cd03248 107 NIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186 (226)
T ss_pred HhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 11 1111 22222233344455 566677888888999999999999888888876
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
..+. .++..+.+ +.++|++||+++++.. ++ +|..++.|
T Consensus 187 ~~l~-~~l~~~~~--~~tii~~sh~~~~~~~-~d--~i~~l~~g 224 (226)
T cd03248 187 QQVQ-QALYDWPE--RRTVLVIAHRLSTVER-AD--QILVLDGG 224 (226)
T ss_pred HHHH-HHHHHHcC--CCEEEEEECCHHHHHh-CC--EEEEecCC
Confidence 6554 45555543 5899999999999864 66 77776654
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-14 Score=196.69 Aligned_cols=157 Identities=12% Similarity=0.068 Sum_probs=119.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc---ccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF---EISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~---~l~~ 1069 (1288)
..+.+|++|++ .+|++++|+||||||||||||+|+|+.. ..++ .|+|+..+ .++.
T Consensus 1952 ~~aL~~ISf~I-~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I-Gy~pQ~~~L~~~LTv 2029 (2272)
T TIGR01257 1952 SPAVDRLCVGV-RPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM-GYCPQFDAIDDLLTG 2029 (2272)
T ss_pred ceEEEeeEEEE-cCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE-EEEeccccCCCCCCH
Confidence 46899999999 8899999999999999999999998641 1122 35565432 1222
Q ss_pred HHH---------------------HHHhcCchhhHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1070 VDR---------------------IFVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1070 ~d~---------------------i~~~ig~~d~i~~~~Stf~~e~-~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.+. ++..+|..+.......++++++ ++++.+++++.+|++||||||++|.|+.....
T Consensus 2030 ~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~- 2108 (2272)
T TIGR01257 2030 REHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRM- 2108 (2272)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH-
Confidence 222 2333444444444456677555 55778888999999999999999999986554
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+.++..+.++ |+++|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 2109 l~~lL~~l~~~-g~TIILtTH~mee~e~lcD--rV~IL~~G~i~~~Gs 2153 (2272)
T TIGR01257 2109 LWNTIVSIIRE-GRAVVLTSHSMEECEALCT--RLAIMVKGAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHhC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 56777777665 8999999999999999999 999999999988775
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-14 Score=173.12 Aligned_cols=159 Identities=14% Similarity=0.161 Sum_probs=113.8
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcC--------cccccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVG--------ADVPAE 1063 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G--------~~vPa~ 1063 (1288)
+..++++++|.+ .+|++++|+|.||+|||||+|.|+|+.-. .+.| ..+|.-
T Consensus 20 gV~AL~~v~l~v-~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~L 98 (500)
T COG1129 20 GVKALDGVSLTV-RPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNL 98 (500)
T ss_pred CceeeccceeEE-eCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCc
Confidence 357899999999 89999999999999999999999995411 0111 112211
Q ss_pred c-----------cc-cchHH---------HHHHhcCchhhHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCCh
Q 000778 1064 I-----------FE-ISPVD---------RIFVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1064 ~-----------~~-l~~~d---------~i~~~ig~~d~i~~~~Stf~~e~~~~~~i-l~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
+ .. .+++| .++.++|..........+++...+++..| .+++.++.||||||||+..+.
T Consensus 99 sVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~ 178 (500)
T COG1129 99 SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTV 178 (500)
T ss_pred cHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 0 01 22222 34555665333444555666444444333 334578899999999888888
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+...+. .+++.|..+ |..+||+||.++.+..++| +|.++..|+.+.+..
T Consensus 179 ~E~~~Lf-~~ir~Lk~~-Gv~ii~ISHrl~Ei~~i~D--ritVlRDG~~v~~~~ 228 (500)
T COG1129 179 KETERLF-DLIRRLKAQ-GVAIIYISHRLDEVFEIAD--RITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHH-HHHHHHHhC-CCEEEEEcCcHHHHHHhcC--EEEEEeCCEEeeecc
Confidence 8877654 788888654 9999999999999999999 999999999887654
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-14 Score=161.28 Aligned_cols=156 Identities=17% Similarity=0.121 Sum_probs=106.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhc-----------------------Ccccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQV-----------------------GADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~-----------------------G~~vPa~~~ 1065 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+... ... -.|+|+...
T Consensus 21 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 99 (261)
T PRK14263 21 FMAVRDSHVPI-RKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99 (261)
T ss_pred EEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc
Confidence 46889999999 78999999999999999999999886421 011 133443321
Q ss_pred --ccchHHHH--------------------HHhcCchhhH----hhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1066 --EISPVDRI--------------------FVRMGAKDHI----MAGQSTFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1066 --~l~~~d~i--------------------~~~ig~~d~i----~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
...+.+.+ +..++....+ ......++ ++.++++.+++++.+|+++|||||++|
T Consensus 100 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsg 179 (261)
T PRK14263 100 PFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSA 179 (261)
T ss_pred cccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 12222322 1122221111 11223455 555667788888999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee--------eEEEEecC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH--------MACQVGNG 1174 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~--------~~~~~~~g 1174 (1288)
.|+.....+ +.++..+. + +.++|++||+++.+..+++ +|.+++ .|.++..|
T Consensus 180 LD~~~~~~l-~~~l~~~~-~-~~tii~isH~~~~i~~~~d--~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 180 LDPIATRRV-EELMVELK-K-DYTIALVTHNMQQAIRVAD--TTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred CCHHHHHHH-HHHHHHHh-c-CCeEEEEeCCHHHHHHhCC--EEEEEecccccccCCceEEEeC
Confidence 988865544 45666664 3 6899999999999988888 888885 56666554
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-14 Score=180.16 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=109.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhc----------------------Ccccccccc-----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQV----------------------GADVPAEIF----- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~----------------------G~~vPa~~~----- 1065 (1288)
..+.++++|.+ .+|++++|+||||||||||||+|+|+.-.... -.|+|+...
T Consensus 273 ~~~l~~is~~i-~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 273 RKRVDDVSFSL-RRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred ccccccceeEE-eCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 35889999999 78999999999999999999999986421101 123443310
Q ss_pred -ccchH--------------------------HHHHHhcCchh-hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 -EISPV--------------------------DRIFVRMGAKD-HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 -~l~~~--------------------------d~i~~~ig~~d-~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
.+++. ..++.+++..+ .......++| +|.++++.+..++.+|.|||||||+
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt 431 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT 431 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 01111 12233344432 2333445666 4556677777889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
+|.|+..... .+.++..+.++ |.++|++|||++++..+++ ++.+++.|.++..
T Consensus 432 ~~LD~~~~~~-l~~~l~~l~~~-g~tviivsHd~~~~~~~~d--~v~~l~~G~i~~~ 484 (500)
T TIGR02633 432 RGVDVGAKYE-IYKLINQLAQE-GVAIIVVSSELAEVLGLSD--RVLVIGEGKLKGD 484 (500)
T ss_pred CCcCHhHHHH-HHHHHHHHHhC-CCEEEEECCCHHHHHHhCC--EEEEEECCEEEEE
Confidence 8888875554 34677777665 8899999999999999998 8888887776643
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=156.18 Aligned_cols=137 Identities=18% Similarity=0.108 Sum_probs=94.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+.-. ...-.|+|+... ..++.
T Consensus 13 ~~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (198)
T TIGR01189 13 RMLFEGLSFTL-NAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSAL 91 (198)
T ss_pred EEEEeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHH
Confidence 46789999999 78999999999999999999999985310 011124444321 11222
Q ss_pred H-----------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 000778 1071 D-----------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVL 1132 (1288)
Q Consensus 1071 d-----------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ail 1132 (1288)
+ .++..++..+.+.....+++ +++++++.+.+++.+|+++|||||++|.|...... .+.++
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~-l~~~l 170 (198)
T TIGR01189 92 ENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVAL-LAGLL 170 (198)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH-HHHHH
Confidence 2 22333444444444445566 56667888888999999999999988888875544 44666
Q ss_pred HHHHhccCcEEEEEcCCchh
Q 000778 1133 EHFVHKVQCRGLFSTHYHRL 1152 (1288)
Q Consensus 1133 e~l~~~~~~~vl~~TH~~~l 1152 (1288)
..+.++ +.++|++||+...
T Consensus 171 ~~~~~~-~~tii~~sH~~~~ 189 (198)
T TIGR01189 171 RAHLAR-GGIVLLTTHQDLG 189 (198)
T ss_pred HHHHhC-CCEEEEEEccccc
Confidence 666544 7899999999753
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-14 Score=157.90 Aligned_cols=139 Identities=16% Similarity=0.079 Sum_probs=96.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCccccccc---cccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEI---FEISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~---~~l~~ 1069 (1288)
..+.++++|++ .+|++++|+||||+||||||++|+|+.- ..++ .|+|+.. ....+
T Consensus 14 ~~il~~~s~~i-~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i-~~~~q~~~~~~~~tv 91 (200)
T PRK13540 14 QPLLQQISFHL-PAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQL-CFVGHRSGINPYLTL 91 (200)
T ss_pred eeEEeeeeEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhhe-EEeccccccCcCCCH
Confidence 35889999999 7899999999999999999999998541 1122 2344321 11222
Q ss_pred HHH----------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 000778 1070 VDR----------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVL 1132 (1288)
Q Consensus 1070 ~d~----------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ail 1132 (1288)
.+. ++..++..+........++ ++.++++.+.+++.+|+++|||||++|.|+.....+. .++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~-~~l 170 (200)
T PRK13540 92 RENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII-TKI 170 (200)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH-HHH
Confidence 322 2333333333333334555 6677788888899999999999998888877655443 555
Q ss_pred HHHHhccCcEEEEEcCCchhhhh
Q 000778 1133 EHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1133 e~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
..+.+. ++++|++||+.++...
T Consensus 171 ~~~~~~-~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 171 QEHRAK-GGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHHHHc-CCEEEEEeCCchhccc
Confidence 556544 8899999999988755
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.7e-14 Score=156.96 Aligned_cols=145 Identities=22% Similarity=0.214 Sum_probs=99.1
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHH---------------hhcCcccccccc-----ccchHHHH-----------
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVIL---------------AQVGADVPAEIF-----EISPVDRI----------- 1073 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------aq~G~~vPa~~~-----~l~~~d~i----------- 1073 (1288)
.+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .+.+.+.+
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 83 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL 83 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccc
Confidence 46899999999999999999999986421 011234554321 11222222
Q ss_pred --------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc
Q 000778 1074 --------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHK 1138 (1288)
Q Consensus 1074 --------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~ 1138 (1288)
+..++..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+. .++..+.++
T Consensus 84 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~ 162 (223)
T TIGR03771 84 RRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLT-ELFIELAGA 162 (223)
T ss_pred cCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHc
Confidence 223333333333344555 4556678888899999999999999999888666554 556666554
Q ss_pred cCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1139 VQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1139 ~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+.++|++||+++.+..+++ ++.++ .|.++..+
T Consensus 163 -~~tvii~sH~~~~~~~~~d--~i~~l-~G~i~~~~ 194 (223)
T TIGR03771 163 -GTAILMTTHDLAQAMATCD--RVVLL-NGRVIADG 194 (223)
T ss_pred -CCEEEEEeCCHHHHHHhCC--EEEEE-CCEEEeec
Confidence 8899999999999888888 67667 57776554
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-14 Score=160.08 Aligned_cols=156 Identities=13% Similarity=0.098 Sum_probs=105.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~G-----------------------~~vPa~~~ 1065 (1288)
..+.++++|++ .+|++++|+|+||+|||||||+|+|+.-.. ..| .|+|+...
T Consensus 20 ~~il~~isl~i-~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (259)
T PRK14260 20 SKAIEGISMDI-YRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN 98 (259)
T ss_pred eEeecceEEEE-cCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc
Confidence 35789999999 789999999999999999999999864210 012 12333211
Q ss_pred --ccchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 --EISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 --~l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
..++.+.+. ..++.. +.+......++ ++.++++.+++++.+|+++|||||+
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 178 (259)
T PRK14260 99 PFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178 (259)
T ss_pred cCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 112222221 111111 11112223445 5666788888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee-----eEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH-----MACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~-----~~~~~~~g 1174 (1288)
+|.|+.....+ +.++..+.+ +.++|++||+++.+..+++ ++.+++ .|.++..|
T Consensus 179 ~~LD~~~~~~l-~~~l~~~~~--~~tiii~tH~~~~i~~~~d--~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 179 SALDPIATMKV-EELIHSLRS--ELTIAIVTHNMQQATRVSD--FTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred ccCCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhcC--eEEEEeccCCCCceEEEeC
Confidence 88888755443 456666643 5899999999999999998 788887 37777655
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-14 Score=160.87 Aligned_cols=157 Identities=17% Similarity=0.075 Sum_probs=107.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hc-------------------------Ccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QV-------------------------GADVPAE 1063 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~-------------------------G~~vPa~ 1063 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+.-.. .. -.|+|+.
T Consensus 29 ~~vl~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 107 (265)
T PRK14252 29 YQALKNINMMV-HEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQK 107 (265)
T ss_pred eeeeeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccC
Confidence 36899999999 789999999999999999999999864210 01 1244433
Q ss_pred ccc--cchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeC
Q 000778 1064 IFE--ISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDE 1114 (1288)
Q Consensus 1064 ~~~--l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDE 1114 (1288)
... .++.+.+. ..++.. +.+......++ ++.++++.+.+++.+|+++||||
T Consensus 108 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 187 (265)
T PRK14252 108 PNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDE 187 (265)
T ss_pred CcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 210 12222221 111111 11112223444 45666778888899999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1115 LGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1115 pg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|++|.|+.....+ ..++..+.+ ++++|++||+++.+..+++ ++.+++.|.++..|.
T Consensus 188 Pt~gLD~~~~~~l-~~~l~~l~~--~~tiiivth~~~~~~~~~d--~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 188 PTSALDPIATASI-EELISDLKN--KVTILIVTHNMQQAARVSD--YTAYMYMGELIEFGA 243 (265)
T ss_pred CCccCCHHHHHHH-HHHHHHHHh--CCEEEEEecCHHHHHHhCC--EEEEEECCEEEEeCC
Confidence 9888888755544 456666643 5899999999999988888 899999988876653
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=178.42 Aligned_cols=154 Identities=11% Similarity=0.025 Sum_probs=109.1
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCcccccccc------c
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEIF------E 1066 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~~------~ 1066 (1288)
.+.++++|.+ ..|++++|+||||||||||||+|+|+.-. .+.-.|+|+... .
T Consensus 262 ~~l~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 340 (491)
T PRK10982 262 PSIRDVSFDL-HKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY 340 (491)
T ss_pred cccceeeEEE-eCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence 4789999999 78999999999999999999999985310 111224444311 1
Q ss_pred cchH---------------------------HHHHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1067 ISPV---------------------------DRIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1067 l~~~---------------------------d~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
+.+. ..++.+++.. +.......++| ++.++++.+..++.+|.+||||||++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~ 420 (491)
T PRK10982 341 LDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTR 420 (491)
T ss_pred CcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 1111 1122233332 23344456666 45566777778899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
|.|+.-...+ +.++..+.+. +.++|++||+++++..+++ ++.+++.|.++.
T Consensus 421 gLD~~~~~~~-~~~l~~l~~~-~~tvi~vsHd~~~~~~~~d--~v~~l~~g~i~~ 471 (491)
T PRK10982 421 GIDVGAKFEI-YQLIAELAKK-DKGIIIISSEMPELLGITD--RILVMSNGLVAG 471 (491)
T ss_pred ccChhHHHHH-HHHHHHHHHC-CCEEEEECCChHHHHhhCC--EEEEEECCEEEE
Confidence 8888865554 4567777654 8899999999999999998 888888887664
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=180.07 Aligned_cols=149 Identities=11% Similarity=0.080 Sum_probs=101.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------hhcCccccccc---cccchH---------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------AQVGADVPAEI---FEISPV--------- 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------aq~G~~vPa~~---~~l~~~--------- 1070 (1288)
..+.+|++|++ .+|++++|+||||||||||||+|+|+.-. ..+ .|+|+.. ..+++.
T Consensus 14 ~~il~~vsl~i-~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i-~~~~q~~~~~~~~tv~e~l~~~~~~ 91 (530)
T PRK15064 14 KPLFENISVKF-GGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERL-GKLRQDQFAFEEFTVLDTVIMGHTE 91 (530)
T ss_pred cEeEeCCEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEE-EEEeccCCcCCCCcHHHHHHHhhHH
Confidence 46889999999 78999999999999999999999986421 012 2344321 111111
Q ss_pred --------------------------------------------HHHHHhcCchhhHh-hcccchHHH-HHHHHHHHHhC
Q 000778 1071 --------------------------------------------DRIFVRMGAKDHIM-AGQSTFLTE-LSETALMLSSA 1104 (1288)
Q Consensus 1071 --------------------------------------------d~i~~~ig~~d~i~-~~~Stf~~e-~~~~~~il~~a 1104 (1288)
..++..+|..+... ...+++|++ .++++.+..++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~ 171 (530)
T PRK15064 92 LWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALF 171 (530)
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHh
Confidence 12233344433222 234667754 45667777789
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEE
Q 000778 1105 TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQ 1170 (1288)
Q Consensus 1105 ~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~ 1170 (1288)
.+|.+||||||++|.|+.... .+.+.|. +.+++||++||+.+++..+++ +|..++.|.+
T Consensus 172 ~~p~lLlLDEPt~~LD~~~~~----~l~~~l~-~~~~tiiivsHd~~~~~~~~d--~i~~l~~g~i 230 (530)
T PRK15064 172 SNPDILLLDEPTNNLDINTIR----WLEDVLN-ERNSTMIIISHDRHFLNSVCT--HMADLDYGEL 230 (530)
T ss_pred cCCCEEEEcCCCcccCHHHHH----HHHHHHH-hCCCeEEEEeCCHHHHHhhcc--eEEEEeCCEE
Confidence 999999999996666666433 2333343 348899999999999999888 8888887765
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-14 Score=173.09 Aligned_cols=156 Identities=20% Similarity=0.172 Sum_probs=116.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccc--------------------------cccc--
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV--------------------------PAEI-- 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~v--------------------------Pa~~-- 1064 (1288)
..+.+||+|++ .+|++++|+|++||||||+.|+|+++.-. ..|..+ |-.+
T Consensus 304 ~~Av~~VSf~l-~~GE~lglVGeSGsGKSTlar~i~gL~~P-~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLn 381 (539)
T COG1123 304 VKAVDDVSFDL-REGETLGLVGESGSGKSTLARILAGLLPP-SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLN 381 (539)
T ss_pred eeeeeeeeeEe-cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEeCcccccccchhhhhhhheEEEEeCcccccC
Confidence 46789999999 89999999999999999999999986632 111100 1000
Q ss_pred cccc----------------------hHHHHHHhcCchhh-HhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1065 FEIS----------------------PVDRIFVRMGAKDH-IMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1065 ~~l~----------------------~~d~i~~~ig~~d~-i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
.+.+ .++.++..+|...+ +......|| ++.++++.+.+++.+|.+||+||| |+
T Consensus 382 Pr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp---~S 458 (539)
T COG1123 382 PRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEP---VS 458 (539)
T ss_pred ccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCC---cc
Confidence 0111 13344556665543 444556677 577789999999999999999999 55
Q ss_pred hHHH--HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1121 TSDG--QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1121 ~~Dg--~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+|. ++-...+|..|.++.|.+.||+|||+.++..+|+ +|.+|+.|+++..|.
T Consensus 459 aLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~d--rv~vm~~G~iVE~G~ 513 (539)
T COG1123 459 ALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIAD--RVAVMYDGRIVEEGP 513 (539)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCc--eEEEEECCeEEEeCC
Confidence 5552 2223366777778889999999999999999999 999999999999873
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-14 Score=158.50 Aligned_cols=157 Identities=16% Similarity=0.137 Sum_probs=107.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--H--hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--L--AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--l--aq~G-----------------------~~vPa~~~ 1065 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.- . ...| .|+|+...
T Consensus 16 ~~~l~~~s~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14266 16 AHILKNVNLDI-PKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94 (250)
T ss_pred eEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc
Confidence 36889999999 7899999999999999999999998631 1 1112 23443321
Q ss_pred c--cchHHHHH----------------------HhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 E--ISPVDRIF----------------------VRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~--l~~~d~i~----------------------~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
. .++.+.+. ..++..+ .+......++ ++.++++.+.+++.+|+++|||||+
T Consensus 95 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~ 174 (250)
T PRK14266 95 PFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPC 174 (250)
T ss_pred cCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1 11222221 1111111 1112223344 5666788888889999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+|.|+.....+ ..++..+. + ++++|++||+++.+..+++ ++.+++.|.++..+.
T Consensus 175 ~gLD~~~~~~l-~~~l~~~~-~-~~tiii~sh~~~~~~~~~~--~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 175 SALDPISTTKI-EDLIHKLK-E-DYTIVIVTHNMQQATRVSK--YTSFFLNGEIIESGL 228 (250)
T ss_pred ccCCHHHHHHH-HHHHHHHh-c-CCeEEEEECCHHHHHhhcC--EEEEEECCeEEEeCC
Confidence 99998765544 46666663 3 6899999999999988887 788888888876653
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-14 Score=182.62 Aligned_cols=149 Identities=19% Similarity=0.131 Sum_probs=100.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC----------ccccccc-----cccch--------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----------ADVPAEI-----FEISP-------- 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G----------~~vPa~~-----~~l~~-------- 1069 (1288)
..+++|++|.+ .+|++++|+||||||||||||+|+|+.-. ..| .|+++.. ..+.+
T Consensus 14 ~~~l~~vs~~i-~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p-d~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~ 91 (638)
T PRK10636 14 RVLLDNATATI-NPGQKVGLVGKNGCGKSTLLALLKNEISA-DGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREY 91 (638)
T ss_pred ceeecCcEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHH
Confidence 46889999999 78999999999999999999999995421 111 1222210 00110
Q ss_pred -------------------------------------HHHHHHhcCch-hhHhhcccchHHH-HHHHHHHHHhCCCCcEE
Q 000778 1070 -------------------------------------VDRIFVRMGAK-DHIMAGQSTFLTE-LSETALMLSSATRNSLV 1110 (1288)
Q Consensus 1070 -------------------------------------~d~i~~~ig~~-d~i~~~~Stf~~e-~~~~~~il~~a~~~sLv 1110 (1288)
+..++..+|.. +......++||++ .++++.+..++.+|+||
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lL 171 (638)
T PRK10636 92 RQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLL 171 (638)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEE
Confidence 11123333433 2334455677754 45677777889999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEE
Q 000778 1111 VLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQ 1170 (1288)
Q Consensus 1111 LLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~ 1170 (1288)
||||| |+++|..++.| +.+.| .+.+.++|+||||.+++..+++ +|..++.|.+
T Consensus 172 LLDEP---tn~LD~~~~~~-L~~~L-~~~~~tviivsHd~~~l~~~~d--~i~~L~~G~i 224 (638)
T PRK10636 172 LLDEP---TNHLDLDAVIW-LEKWL-KSYQGTLILISHDRDFLDPIVD--KIIHIEQQSL 224 (638)
T ss_pred EEcCC---CCcCCHHHHHH-HHHHH-HhCCCeEEEEeCCHHHHHHhcC--EEEEEeCCEE
Confidence 99999 55555444433 34444 4457899999999999999888 8888877754
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.2e-14 Score=159.90 Aligned_cols=155 Identities=14% Similarity=0.039 Sum_probs=105.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccccc--chH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIFEI--SPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~~l--~~~ 1070 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+....+ .+.
T Consensus 34 ~~il~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~ 112 (257)
T cd03288 34 KPVLKHVKAYI-KPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIR 112 (257)
T ss_pred CcceeEEEEEE-cCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHH
Confidence 36889999999 78999999999999999999999986410 11113444332110 111
Q ss_pred --------------HHHHHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1071 --------------DRIFVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1071 --------------d~i~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
...+...+..+.+.. ....++ ++.++++.+.+++.+|+++|||||++|.|+...
T Consensus 113 ~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~ 192 (257)
T cd03288 113 FNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATE 192 (257)
T ss_pred HhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 111112222221111 113455 566778888889999999999999999988754
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
. ....++..+. + ++++|++||+++.+.. ++ +|.+++.|.++..+
T Consensus 193 ~-~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~d--ri~~l~~G~i~~~g 236 (257)
T cd03288 193 N-ILQKVVMTAF-A-DRTVVTIAHRVSTILD-AD--LVLVLSRGILVECD 236 (257)
T ss_pred H-HHHHHHHHhc-C-CCEEEEEecChHHHHh-CC--EEEEEECCEEEEeC
Confidence 4 3445555553 3 7899999999998875 66 89999999887654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-14 Score=159.34 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=100.8
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCc----------------------------------c
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA----------------------------------D 1059 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~----------------------------------~ 1059 (1288)
.+..|+++ + .+|++++|+||||+|||||||+|+|+.- ...|. +
T Consensus 15 ~~l~~i~~-i-~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLPV-P-REGQVLGLVGPNGIGKSTALKILAGKLK-PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCCC-C-CCCCEEEEECCCCCCHHHHHHHHhCCcC-CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 46677874 5 6899999999999999999999998642 11111 1
Q ss_pred cccccccc------------------chHHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1060 VPAEIFEI------------------SPVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1060 vPa~~~~l------------------~~~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
+|+..... .....++.++|..+.+.....+++ ++.++++.+..++.+|+++|||||++|.|
T Consensus 92 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD 171 (255)
T cd03236 92 KPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171 (255)
T ss_pred ecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCC
Confidence 11110000 011223445555554444555666 45566777778899999999999988888
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH 1166 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~ 1166 (1288)
+.....+. .++..+.++ ++++|++||+++++..+++ +|.+++
T Consensus 172 ~~~~~~l~-~~l~~l~~~-~~tIIiiSHd~~~~~~~ad--~i~~l~ 213 (255)
T cd03236 172 IKQRLNAA-RLIRELAED-DNYVLVVEHDLAVLDYLSD--YIHCLY 213 (255)
T ss_pred HHHHHHHH-HHHHHHHhc-CCEEEEEECCHHHHHHhCC--EEEEEC
Confidence 88665554 566667654 7899999999999988887 776664
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=174.48 Aligned_cols=150 Identities=16% Similarity=0.142 Sum_probs=105.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----------hcCccccccc-cccc-------------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----------QVGADVPAEI-FEIS------------- 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----------q~G~~vPa~~-~~l~------------- 1068 (1288)
..+.++++|.+ .+|++++|+||||||||||||+|+|+.-.. .+ .|+|+.. ..+.
T Consensus 522 ~~il~~vsl~i-~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~i-gyv~Q~~~~~l~~~~~~~~~~~~~~ 599 (718)
T PLN03073 522 PLLFKNLNFGI-DLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRM-AVFSQHHVDGLDLSSNPLLYMMRCF 599 (718)
T ss_pred CeeEeccEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeE-EEEeccccccCCcchhHHHHHHHhc
Confidence 46899999999 789999999999999999999999864211 11 2344322 0000
Q ss_pred ------hHHHHHHhcCchh-hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccC
Q 000778 1069 ------PVDRIFVRMGAKD-HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQ 1140 (1288)
Q Consensus 1069 ------~~d~i~~~ig~~d-~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~ 1140 (1288)
.+..++.++|..+ ......+.+| ++.++++.+..++.+|.+||||||++|.|+.... .+++.|.+. +
T Consensus 600 ~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~----~l~~~L~~~-~ 674 (718)
T PLN03073 600 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVE----ALIQGLVLF-Q 674 (718)
T ss_pred CCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH----HHHHHHHHc-C
Confidence 0122344555543 3445566777 4556677788889999999999997777666433 344555432 4
Q ss_pred cEEEEEcCCchhhhhhcCCCceEEeeeEEEE
Q 000778 1141 CRGLFSTHYHRLAVDYKKDPRVSLCHMACQV 1171 (1288)
Q Consensus 1141 ~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~ 1171 (1288)
.++|++||+.+++..+++ ++.+++.|.++
T Consensus 675 gtvIivSHd~~~i~~~~d--rv~~l~~G~i~ 703 (718)
T PLN03073 675 GGVLMVSHDEHLISGSVD--ELWVVSEGKVT 703 (718)
T ss_pred CEEEEEECCHHHHHHhCC--EEEEEECCEEE
Confidence 599999999999999888 88888877765
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.1e-14 Score=155.17 Aligned_cols=149 Identities=11% Similarity=0.044 Sum_probs=98.9
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc--cc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF--EI 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~--~l 1067 (1288)
.+.++++|.+ .+|++++|+||||+||||||++|+|+... .+.-.|+|+... ..
T Consensus 15 ~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (218)
T cd03290 15 ATLSNINIRI-PTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNA 93 (218)
T ss_pred cceeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccc
Confidence 5788999998 78999999999999999999999986411 011123443321 11
Q ss_pred chHHHH--------------HHhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1068 SPVDRI--------------FVRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1068 ~~~d~i--------------~~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
++.+.+ ...++..+.+. .....++ ++.++++.+.+++.+|++||||||++|.|+
T Consensus 94 t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 173 (218)
T cd03290 94 TVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDI 173 (218)
T ss_pred cHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCH
Confidence 222222 11222221111 1234555 556677888888999999999999888888
Q ss_pred HHHHHHHHH-HHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1122 SDGQAIAES-VLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1122 ~Dg~aia~a-ile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
.....+... +++.+.+ .+.++|++||+.+.+. .++ ++.+++.
T Consensus 174 ~~~~~l~~~~ll~~~~~-~~~tii~~sH~~~~~~-~~d--~i~~l~~ 216 (218)
T cd03290 174 HLSDHLMQEGILKFLQD-DKRTLVLVTHKLQYLP-HAD--WIIAMKD 216 (218)
T ss_pred HHHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHh-hCC--EEEEecC
Confidence 876665543 6666644 4789999999999875 455 6655543
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-14 Score=192.92 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=118.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
+.+.++++|++ .+|++++|+||||||||||||+|+|+... .+.-.++|+... .+++.
T Consensus 943 k~aL~~lsl~I-~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 943 RPAVDRLNITF-YENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred ceEEEeeEEEE-cCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHH
Confidence 56899999999 78999999999999999999999996411 111235555431 12222
Q ss_pred H---------------------HHHHhcCchhhHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 D---------------------RIFVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d---------------------~i~~~ig~~d~i~~~~Stf~~e~-~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+ .++.++|..+......++++++| ++++.+++++.+|++||||||++|.|+.....+
T Consensus 1022 E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l- 1100 (2272)
T TIGR01257 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI- 1100 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH-
Confidence 2 23444555544445566777555 457777888999999999999999999866654
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.+|..+ ++ |.++|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 1101 ~~lL~~l-~~-g~TIIltTHdmdea~~laD--rI~iL~~GkL~~~Gs 1143 (2272)
T TIGR01257 1101 WDLLLKY-RS-GRTIIMSTHHMDEADLLGD--RIAIISQGRLYCSGT 1143 (2272)
T ss_pred HHHHHHH-hC-CCEEEEEECCHHHHHHhCC--EEEEEECCEEEEecC
Confidence 5777777 34 8899999999999999998 999999999987764
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-14 Score=179.17 Aligned_cols=149 Identities=17% Similarity=0.055 Sum_probs=101.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------hhcCcccccccc---ccchHHHHHH----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------AQVGADVPAEIF---EISPVDRIFV---- 1075 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------aq~G~~vPa~~~---~l~~~d~i~~---- 1075 (1288)
..+.+|++|++ .+|++++|+||||+|||||||+|+|+... .++ .|||+... .+++.+.+..
T Consensus 20 ~~il~~vs~~i-~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i-~~v~Q~~~~~~~~tv~e~l~~~~~~ 97 (556)
T PRK11819 20 KQILKDISLSF-FPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKV-GYLPQEPQLDPEKTVRENVEEGVAE 97 (556)
T ss_pred CeeeeCceEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEE-EEEecCCCCCCCCcHHHHHHHhhHH
Confidence 46889999999 78999999999999999999999996521 112 25555431 2233333210
Q ss_pred -----------------------------------------------------hcCchhhHhhcccchHH-HHHHHHHHH
Q 000778 1076 -----------------------------------------------------RMGAKDHIMAGQSTFLT-ELSETALML 1101 (1288)
Q Consensus 1076 -----------------------------------------------------~ig~~d~i~~~~Stf~~-e~~~~~~il 1101 (1288)
++|.. ......+++|+ +.++++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~LSgGqkqrv~la~ 176 (556)
T PRK11819 98 VKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTKLSGGERRRVALCR 176 (556)
T ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhhcCHHHHHHHHHHH
Confidence 11110 01223455664 556677888
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEE
Q 000778 1102 SSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQV 1171 (1288)
Q Consensus 1102 ~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~ 1171 (1288)
.++.+|++||||||++|.|+..... +.+.|. +.+.++|++||+.+++..+++ +|..++.|.++
T Consensus 177 al~~~p~vlLLDEPt~~LD~~~~~~----l~~~L~-~~~~tviiisHd~~~~~~~~d--~i~~l~~g~i~ 239 (556)
T PRK11819 177 LLLEKPDMLLLDEPTNHLDAESVAW----LEQFLH-DYPGTVVAVTHDRYFLDNVAG--WILELDRGRGI 239 (556)
T ss_pred HHhCCCCEEEEcCCCCcCChHHHHH----HHHHHH-hCCCeEEEEeCCHHHHHhhcC--eEEEEeCCEEE
Confidence 8899999999999966666654332 233332 234699999999999999888 88888877654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-14 Score=176.83 Aligned_cols=151 Identities=13% Similarity=0.076 Sum_probs=105.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------h--hcCcccccccc-----ccchHH-------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------A--QVGADVPAEIF-----EISPVD------- 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------a--q~G~~vPa~~~-----~l~~~d------- 1071 (1288)
..+.++++|.+ .+|++++|+||||||||||||+|+|+... . ..-.|+|+... .+++.+
T Consensus 332 ~~~l~~is~~i-~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 410 (530)
T PRK15064 332 GPLFKNLNLLL-EAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQ 410 (530)
T ss_pred ceeecCcEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhcc
Confidence 46889999999 78999999999999999999999986421 0 01134554321 122222
Q ss_pred ---------HHHHhcCch-hhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccC
Q 000778 1072 ---------RIFVRMGAK-DHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQ 1140 (1288)
Q Consensus 1072 ---------~i~~~ig~~-d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~ 1140 (1288)
.++.++|.. +......+++|+ +.++++.+..++.+|.++|||||++|.|+.....+ .+.|.+ .+
T Consensus 411 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l----~~~l~~-~~ 485 (530)
T PRK15064 411 EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESL----NMALEK-YE 485 (530)
T ss_pred CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH----HHHHHH-CC
Confidence 233344442 334445667774 55567777788999999999999777777754433 333322 35
Q ss_pred cEEEEEcCCchhhhhhcCCCceEEeeeEEEE
Q 000778 1141 CRGLFSTHYHRLAVDYKKDPRVSLCHMACQV 1171 (1288)
Q Consensus 1141 ~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~ 1171 (1288)
.++|++||+.+++..+++ ++.+++.|.++
T Consensus 486 ~tvi~vsHd~~~~~~~~d--~i~~l~~g~i~ 514 (530)
T PRK15064 486 GTLIFVSHDREFVSSLAT--RIIEITPDGVV 514 (530)
T ss_pred CEEEEEeCCHHHHHHhCC--EEEEEECCeEE
Confidence 699999999999999888 88888888765
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.7e-14 Score=159.91 Aligned_cols=168 Identities=15% Similarity=0.101 Sum_probs=111.7
Q ss_pred CCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC--------ccccc
Q 000778 991 EPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG--------ADVPA 1062 (1288)
Q Consensus 991 ~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G--------~~vPa 1062 (1288)
.+.|.+++.... ...++++++|.+ .+|++++|+||||+||||||++|+|+.- ...| .|+|+
T Consensus 37 ~~~l~i~nls~~---------~~~vL~~vs~~i-~~Ge~~~liG~NGsGKSTLl~~I~Gl~~-p~~G~I~i~g~i~yv~q 105 (282)
T cd03291 37 DNNLFFSNLCLV---------GAPVLKNINLKI-EKGEMLAITGSTGSGKTSLLMLILGELE-PSEGKIKHSGRISFSSQ 105 (282)
T ss_pred CCeEEEEEEEEe---------cccceeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEEEEeC
Confidence 345777776542 135889999999 7899999999999999999999998642 1222 24554
Q ss_pred ccc--ccchHHHHH--------------HhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeC
Q 000778 1063 EIF--EISPVDRIF--------------VRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDE 1114 (1288)
Q Consensus 1063 ~~~--~l~~~d~i~--------------~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDE 1114 (1288)
... ..++.+.+. ..++..+.+.. ....++ ++.++++.+.+++.+|+++||||
T Consensus 106 ~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDE 185 (282)
T cd03291 106 FSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS 185 (282)
T ss_pred cccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 421 112222221 11222221111 113455 56667788888899999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1115 LGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1115 pg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|++|.|+.....+...++..+. . +.++|++||+++.+. .++ ++.+++.|.++..|
T Consensus 186 Pt~gLD~~~~~~l~~~ll~~~~-~-~~tIiiisH~~~~~~-~~d--~i~~l~~G~i~~~g 240 (282)
T cd03291 186 PFGYLDVFTEKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KAD--KILILHEGSSYFYG 240 (282)
T ss_pred CCccCCHHHHHHHHHHHHHHhh-C-CCEEEEEeCChHHHH-hCC--EEEEEECCEEEEEC
Confidence 9888888755544444455553 3 689999999999875 566 78888888765443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-14 Score=169.28 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=117.7
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------------hhcCcccccccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------------AQVGADVPAEIF 1065 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------------aq~G~~vPa~~~ 1065 (1288)
.+.+||+|++ .+|++++|+|.+||||||+.++|.++.-. ...-+++|++..
T Consensus 23 ~~v~~vsf~v-~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 23 PAVRDVSFEV-EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeecceEEe-cCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 5889999999 89999999999999999999999875311 011134444421
Q ss_pred -cc----ch----------------------HHHHHHhcCchhhHhh--cccchHHHHHH-HHHHHHhCCCCcEEEEeCC
Q 000778 1066 -EI----SP----------------------VDRIFVRMGAKDHIMA--GQSTFLTELSE-TALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1066 -~l----~~----------------------~d~i~~~ig~~d~i~~--~~Stf~~e~~~-~~~il~~a~~~sLvLLDEp 1115 (1288)
.+ .+ ...+|..+|..+.... ....||++|++ +..+.+++.+|+|||+|||
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP 181 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC
Confidence 11 11 1234556666655554 56677876654 6666778999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|.++|..-.. ....+|+.|.++.|+++||+|||++++.++++ +|.+|+.|.+++.|.
T Consensus 182 TTaLDvt~q~-qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aD--rv~Vm~~G~iVE~G~ 238 (539)
T COG1123 182 TTALDVTTQA-QILDLLKDLQRELGMAVLFITHDLGVVAELAD--RVVVMYKGEIVETGP 238 (539)
T ss_pred ccccCHHHHH-HHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcC--eEEEEECCEEEEecC
Confidence 5555554333 34477788888889999999999999999999 999999999998874
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-14 Score=153.11 Aligned_cols=137 Identities=16% Similarity=0.148 Sum_probs=92.9
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC-----------------ccccccc---cccchHHH-
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG-----------------ADVPAEI---FEISPVDR- 1072 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G-----------------~~vPa~~---~~l~~~d~- 1072 (1288)
.+.+ ++|++ .+|++++|+||||+|||||||+|+|+.-. ..| .|+|... ...++.+.
T Consensus 15 ~l~~-vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l 91 (195)
T PRK13541 15 NLFD-LSITF-LPSAITYIKGANGCGKSSLLRMIAGIMQP-SSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENL 91 (195)
T ss_pred EEEE-EEEEE-cCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHH
Confidence 3444 89998 78999999999999999999999996311 111 2333321 11122222
Q ss_pred ---------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 000778 1073 ---------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFV 1136 (1288)
Q Consensus 1073 ---------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~ 1136 (1288)
++..++..+.+....+.++ ++.++++.+.+++.+|+++|||||++|.|+.....+ ..++....
T Consensus 92 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l-~~~l~~~~ 170 (195)
T PRK13541 92 KFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLL-NNLIVMKA 170 (195)
T ss_pred HHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHH
Confidence 2333444444444556666 455677888888999999999999888888865443 45555444
Q ss_pred hccCcEEEEEcCCchhhhh
Q 000778 1137 HKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1137 ~~~~~~vl~~TH~~~l~~~ 1155 (1288)
+ .+.++|++||+.+.+..
T Consensus 171 ~-~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 171 N-SGGIVLLSSHLESSIKS 188 (195)
T ss_pred h-CCCEEEEEeCCccccch
Confidence 4 47899999999987665
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.6e-14 Score=154.76 Aligned_cols=155 Identities=19% Similarity=0.170 Sum_probs=97.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHh-hhhhHH--HH---------hhcC-ccccc--------------cc-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLR-QVCLAV--IL---------AQVG-ADVPA--------------EI- 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr-~i~~i~--il---------aq~G-~~vPa--------------~~- 1064 (1288)
..++++++|++ .+|++++|+||||||||||++ .|.... .+ ...| .++|. ..
T Consensus 8 ~~~l~~vsl~i-~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T cd03270 8 EHNLKNVDVDI-PRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKT 86 (226)
T ss_pred hhccccceeec-CCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCC
Confidence 46788999999 899999999999999999962 221100 00 0011 11111 00
Q ss_pred ----c--ccchH-------H------------HHHHhcCchh-hHhhcccchHH-HHHHHHHHHHhCCCC--cEEEEeCC
Q 000778 1065 ----F--EISPV-------D------------RIFVRMGAKD-HIMAGQSTFLT-ELSETALMLSSATRN--SLVVLDEL 1115 (1288)
Q Consensus 1065 ----~--~l~~~-------d------------~i~~~ig~~d-~i~~~~Stf~~-e~~~~~~il~~a~~~--sLvLLDEp 1115 (1288)
. .++.+ . ..+.+++..+ .+....+++++ +.++++.+..++.+| +++|||||
T Consensus 87 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEP 166 (226)
T cd03270 87 TSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEP 166 (226)
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 0 00000 0 0112223322 23444566664 445566667777776 69999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEe------eeEEEEec
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLC------HMACQVGN 1173 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~------~~~~~~~~ 1173 (1288)
++|.|+.....+. .++..+.+. |.++|++||+++++. +++ ++.++ +.|.++..
T Consensus 167 t~gLD~~~~~~l~-~~l~~~~~~-g~tii~itH~~~~~~-~~d--~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 167 SIGLHPRDNDRLI-ETLKRLRDL-GNTVLVVEHDEDTIR-AAD--HVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred ccCCCHHHHHHHH-HHHHHHHhC-CCEEEEEEeCHHHHH-hCC--EEEEeCCCccccCCEEEec
Confidence 9999988766554 556666554 889999999999874 677 88888 77766654
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=140.00 Aligned_cols=154 Identities=19% Similarity=0.155 Sum_probs=115.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------H-----------------hhcCcccccccc--
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------L-----------------AQVGADVPAEIF-- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------l-----------------aq~G~~vPa~~~-- 1065 (1288)
-.|+.+++|.+ ..|+.++|+||+||||||||-.++|+-- + .++| ||.+...
T Consensus 23 l~IL~~V~L~v-~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vG-fVFQSF~Li 100 (228)
T COG4181 23 LSILKGVELVV-KRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVG-FVFQSFHLI 100 (228)
T ss_pred eeEeecceEEe-cCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhcccee-EEEEeeecc
Confidence 47899999999 7899999999999999999999998431 0 1122 2222110
Q ss_pred ---------c-------------cchHHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1066 ---------E-------------ISPVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1066 ---------~-------------l~~~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
. .......+.++|..+.+.....+++ +|.++++.+.+.+..|.+++.|||+-..|..
T Consensus 101 p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~ 180 (228)
T COG4181 101 PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180 (228)
T ss_pred ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchh
Confidence 0 1113346778888888877777777 6888999999999999999999997777777
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
.|..|+ .++-.+.++.|.|.+++|||..++..+. +.+.+..|.++.
T Consensus 181 Tg~~ia-DLlF~lnre~G~TlVlVTHD~~LA~Rc~---R~~r~~~G~l~~ 226 (228)
T COG4181 181 TGDKIA-DLLFALNRERGTTLVLVTHDPQLAARCD---RQLRLRSGRLVE 226 (228)
T ss_pred HHHHHH-HHHHHHhhhcCceEEEEeCCHHHHHhhh---heeeeecceecc
Confidence 788887 4555566777999999999999998754 555666666553
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=142.69 Aligned_cols=152 Identities=15% Similarity=0.147 Sum_probs=107.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh----cC-----------ccccccccccchH-------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ----VG-----------ADVPAEIFEISPV------- 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq----~G-----------~~vPa~~~~l~~~------- 1070 (1288)
..++.|+++++ .+|++++++||+||||||||+.++|++-..+ ++ ..|.+..+-+++.
T Consensus 18 ~~~le~vsL~i-a~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNva 96 (259)
T COG4525 18 RSALEDVSLTI-ASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVA 96 (259)
T ss_pred hhhhhccceee-cCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHH
Confidence 45788999999 8899999999999999999999999764332 11 1122222223322
Q ss_pred -----------------HHHHHhcCchhhHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 000778 1071 -----------------DRIFVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVL 1132 (1288)
Q Consensus 1071 -----------------d~i~~~ig~~d~i~~~~Stf~~e~~~-~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ail 1132 (1288)
++.+..+|..+.-......+++.|++ +..+.+++.+|.+++||||+...|.+-...+-.-++
T Consensus 97 fgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLl 176 (259)
T COG4525 97 FGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLL 176 (259)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHH
Confidence 23344455555444555667777765 555667889999999999977776665555544455
Q ss_pred HHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1133 EHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1133 e~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
+-+ +..|..++++||+.+.+..+++ +++++.-+
T Consensus 177 dlw-~~tgk~~lliTH~ieEAlflat--rLvvlsp~ 209 (259)
T COG4525 177 DLW-QETGKQVLLITHDIEEALFLAT--RLVVLSPG 209 (259)
T ss_pred HHH-HHhCCeEEEEeccHHHHHhhhh--eeEEecCC
Confidence 544 5568999999999999999888 77776543
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.8e-14 Score=176.42 Aligned_cols=158 Identities=16% Similarity=0.105 Sum_probs=112.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~d 1071 (1288)
+.+++|+++.+ .+|++++|+|||||||||||++|+|..-. .+.-+|||+... .+++.+
T Consensus 81 ~~iL~~vs~~i-~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 81 RTILNGVTGMA-SPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRE 159 (659)
T ss_pred CeeeeCCEEEE-ECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHH
Confidence 46899999999 78999999999999999999999986421 011245655431 122222
Q ss_pred H------------------------HHHhcCchhhHh-----hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1072 R------------------------IFVRMGAKDHIM-----AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1072 ~------------------------i~~~ig~~d~i~-----~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
. ++..+|..+... .....++ +|.++++.+..++.+|+++|||||++|.|+
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~ 239 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCH
Confidence 2 222333322110 1123355 566778888889999999999999888888
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCch-hhhhhcCCCceEEeeeEEEEecCC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHR-LAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~-l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.....+. .++..+.++ |.|+|++||+++ .+..+++ ++.+++.|.++..|.
T Consensus 240 ~~~~~l~-~~L~~l~~~-g~TvI~~sH~~~~~i~~~~D--~iilL~~G~iv~~G~ 290 (659)
T PLN03211 240 TAAYRLV-LTLGSLAQK-GKTIVTSMHQPSSRVYQMFD--SVLVLSEGRCLFFGK 290 (659)
T ss_pred HHHHHHH-HHHHHHHhC-CCEEEEEecCCCHHHHHhhc--eEEEecCCcEEEECC
Confidence 8666544 566777654 899999999997 4667777 899999999888775
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.2e-14 Score=162.23 Aligned_cols=141 Identities=16% Similarity=0.114 Sum_probs=97.9
Q ss_pred EEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchHHH------------------
Q 000778 1032 LTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVDR------------------ 1072 (1288)
Q Consensus 1032 ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~d~------------------ 1072 (1288)
|+||||||||||||+|+|+.-. .+.-.|+|+... .+.+.+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999986421 001124444321 1222222
Q ss_pred ---HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcC
Q 000778 1073 ---IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTH 1148 (1288)
Q Consensus 1073 ---i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH 1148 (1288)
++..++..+.+.....++| ++.++++.+.+++.+|+++|||||++|.|+.....+ +.++..+.++.+.++|++||
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l-~~~l~~l~~~~g~tiiivTH 159 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQM-QLELKTIQEQLGITFVFVTH 159 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeC
Confidence 2233333333333445566 455677888889999999999999888888855544 46666666555899999999
Q ss_pred CchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1149 YHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1149 ~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+++.+..+++ +|.+++.|.++..++
T Consensus 160 d~~e~~~~~d--~i~vl~~G~i~~~g~ 184 (325)
T TIGR01187 160 DQEEAMTMSD--RIAIMRKGKIAQIGT 184 (325)
T ss_pred CHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 9999988888 899999998876653
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.9e-14 Score=174.32 Aligned_cols=150 Identities=16% Similarity=0.038 Sum_probs=99.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh---------hcCcccccccc---ccchHHHHHH-----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA---------QVGADVPAEIF---EISPVDRIFV----- 1075 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila---------q~G~~vPa~~~---~l~~~d~i~~----- 1075 (1288)
..+.+|++|.+ .+|++++|+||||||||||||+|+|+.-.. +.-.|||+... .+++.+.+..
T Consensus 18 ~~il~~is~~i-~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~ 96 (552)
T TIGR03719 18 KEILKDISLSF-FPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEI 96 (552)
T ss_pred CeeecCceEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHH
Confidence 46889999999 789999999999999999999999864210 11135555421 2233333210
Q ss_pred ----------------------------------------------------hcCchhhHhhcccchH-HHHHHHHHHHH
Q 000778 1076 ----------------------------------------------------RMGAKDHIMAGQSTFL-TELSETALMLS 1102 (1288)
Q Consensus 1076 ----------------------------------------------------~ig~~d~i~~~~Stf~-~e~~~~~~il~ 1102 (1288)
.+|.. ......+++| ++.++++.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~LSgGqkqrv~la~a 175 (552)
T TIGR03719 97 KDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVTKLSGGERRRVALCRL 175 (552)
T ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchhhcCHHHHHHHHHHHH
Confidence 00000 0112334566 45566777888
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEE
Q 000778 1103 SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQV 1171 (1288)
Q Consensus 1103 ~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~ 1171 (1288)
++.+|++||||||++|.|+.... .+.+.|. +.++++|++||+.+++..+++ +|..++.|.++
T Consensus 176 l~~~p~lLLLDEPt~~LD~~~~~----~l~~~L~-~~~~tvIiisHd~~~~~~~~d--~v~~l~~g~i~ 237 (552)
T TIGR03719 176 LLSKPDMLLLDEPTNHLDAESVA----WLEQHLQ-EYPGTVVAVTHDRYFLDNVAG--WILELDRGRGI 237 (552)
T ss_pred HhcCCCEEEEcCCCCCCChHHHH----HHHHHHH-hCCCeEEEEeCCHHHHHhhcC--eEEEEECCEEE
Confidence 89999999999996666655433 2333333 335699999999999998888 88888777543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=171.73 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=104.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCc----------------------------------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA---------------------------------- 1058 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~---------------------------------- 1058 (1288)
.|++.+++ .+ .+|++++|+||||+|||||||+|+|+... ..|.
T Consensus 87 ~~~L~~l~-~i-~~Gev~gLvG~NGaGKSTLlkiL~G~l~p-~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 163 (590)
T PRK13409 87 GFKLYGLP-IP-KEGKVTGILGPNGIGKTTAVKILSGELIP-NLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163 (590)
T ss_pred ceeEecCC-cC-CCCCEEEEECCCCCCHHHHHHHHhCCccC-CCccccCCCcHHHHHHHhCChHHHHHHHHHhccCccee
Confidence 47899998 66 78999999999999999999999985321 1111
Q ss_pred ccccccccc------------------chHHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1059 DVPAEIFEI------------------SPVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1059 ~vPa~~~~l------------------~~~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
+.|+..... ..++.++..++.........+++| +|+++++.+..++.+|+++|||||++|.
T Consensus 164 ~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~L 243 (590)
T PRK13409 164 HKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYL 243 (590)
T ss_pred ecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 111110000 012234455566555556667777 4556677778889999999999998888
Q ss_pred ChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1120 s~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
|+.....+. .++..+.+ +.++|++||+++++..+++ +|.+++.
T Consensus 244 D~~~~~~l~-~~i~~l~~--g~tvIivsHd~~~l~~~~D--~v~vl~~ 286 (590)
T PRK13409 244 DIRQRLNVA-RLIRELAE--GKYVLVVEHDLAVLDYLAD--NVHIAYG 286 (590)
T ss_pred CHHHHHHHH-HHHHHHHC--CCEEEEEeCCHHHHHHhCC--EEEEEeC
Confidence 887665544 56677754 8899999999999998888 6666643
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.4e-14 Score=176.57 Aligned_cols=148 Identities=21% Similarity=0.200 Sum_probs=96.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC----------ccccccc---cccchHHH-------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----------ADVPAEI---FEISPVDR------- 1072 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G----------~~vPa~~---~~l~~~d~------- 1072 (1288)
..+++|++|.+ .+|++++|+||||||||||||+|+|+... ..| .++|+.. ....+++.
T Consensus 16 ~~il~~is~~i-~~Ge~v~LvG~NGsGKSTLLriiaG~~~p-~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~ 93 (635)
T PRK11147 16 APLLDNAELHI-EDNERVCLVGRNGAGKSTLMKILNGEVLL-DDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEE 93 (635)
T ss_pred ceeEeCcEEEE-CCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHH
Confidence 46889999999 78999999999999999999999996421 111 1222211 00011110
Q ss_pred ------------------------------------------------HHHhcCchhhHhhcccchHH-HHHHHHHHHHh
Q 000778 1073 ------------------------------------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSS 1103 (1288)
Q Consensus 1073 ------------------------------------------------i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~ 1103 (1288)
++..+|.. .....++||+ +.++++.+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL 171 (635)
T PRK11147 94 QAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRAL 171 (635)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHH
Confidence 11111111 0123456664 55677888888
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEE
Q 000778 1104 ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQV 1171 (1288)
Q Consensus 1104 a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~ 1171 (1288)
+.+|+||||||| |+++|..++. .+.+.| .+.+.++|+|||+.+++..+++ +|..++.|.++
T Consensus 172 ~~~P~lLLLDEP---t~~LD~~~~~-~L~~~L-~~~~~tvlivsHd~~~l~~~~d--~i~~L~~G~i~ 232 (635)
T PRK11147 172 VSNPDVLLLDEP---TNHLDIETIE-WLEGFL-KTFQGSIIFISHDRSFIRNMAT--RIVDLDRGKLV 232 (635)
T ss_pred hcCCCEEEEcCC---CCccCHHHHH-HHHHHH-HhCCCEEEEEeCCHHHHHHhcC--eEEEEECCEEE
Confidence 999999999999 5555544433 233433 3345799999999999999888 88888777543
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-13 Score=150.39 Aligned_cols=154 Identities=19% Similarity=0.185 Sum_probs=118.8
Q ss_pred ccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------HhhcCccccccccccc---------------
Q 000778 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------LAQVGADVPAEIFEIS--------------- 1068 (1288)
Q Consensus 1018 di~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------laq~G~~vPa~~~~l~--------------- 1068 (1288)
+++|.. ....+.+|-|++|+|||||+++|+|+.- -++.|.++|.+.-+++
T Consensus 16 ~a~~~~-p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 16 DANFTL-PARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEeccC-CCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 566665 3337999999999999999999999652 2445556665443332
Q ss_pred -------------hHHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 000778 1069 -------------PVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1069 -------------~~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~ 1134 (1288)
.||++..-+|.+.-+.+..++++ +|.++++.-.++.+.|.|+|||||.+..|..--..+ .-.+|.
T Consensus 95 gNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Ei-lpylER 173 (352)
T COG4148 95 GNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREI-LPYLER 173 (352)
T ss_pred cchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHH-HHHHHH
Confidence 35666667777777777778887 688889988999999999999999444443323333 367888
Q ss_pred HHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1135 FVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1135 l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|.++.+..++++||-++.+..+++ +|+++..|.+...|.
T Consensus 174 L~~e~~IPIlYVSHS~~Ev~RLAd--~vV~le~GkV~A~g~ 212 (352)
T COG4148 174 LRDEINIPILYVSHSLDEVLRLAD--RVVVLENGKVKASGP 212 (352)
T ss_pred HHHhcCCCEEEEecCHHHHHhhhh--eEEEecCCeEEecCc
Confidence 988899999999999999999999 999999999987763
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.4e-13 Score=165.86 Aligned_cols=155 Identities=18% Similarity=0.172 Sum_probs=107.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--------------------HHhhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--------------------ilaq~G~~vPa~~~--~l~~~ 1070 (1288)
..+++|++|++ .+|++++|+|+||||||||+|.+.|+. -+.+.-.+||++.. .-++.
T Consensus 486 ~~vL~~isL~I-~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~ 564 (709)
T COG2274 486 PPVLEDLSLEI-PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564 (709)
T ss_pred cchhhceeEEe-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHH
Confidence 47899999999 899999999999999999999999853 12333346777642 11122
Q ss_pred H------------HHH---HhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 D------------RIF---VRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d------------~i~---~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
| ++. ..-|+.+.+. .+-+.+| ++.++++.++++..+|++||||||+++.|+..
T Consensus 565 eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~s 644 (709)
T COG2274 565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET 644 (709)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhH
Confidence 2 222 1224444444 2234455 55667888888999999999999944444442
Q ss_pred HHHHHHHHHHHHHhc-cCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHK-VQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~-~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
-. .|.+.|.+- .|+|+|++||.+..... ++ +|++++.|+++.+|+
T Consensus 645 E~----~I~~~L~~~~~~~T~I~IaHRl~ti~~-ad--rIiVl~~Gkiv~~gs 690 (709)
T COG2274 645 EA----IILQNLLQILQGRTVIIIAHRLSTIRS-AD--RIIVLDQGKIVEQGS 690 (709)
T ss_pred HH----HHHHHHHHHhcCCeEEEEEccchHhhh-cc--EEEEccCCceeccCC
Confidence 22 233333321 36999999999988766 44 899999999999885
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.3e-14 Score=164.62 Aligned_cols=148 Identities=20% Similarity=0.173 Sum_probs=105.4
Q ss_pred CCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--HH-h---hcCcccccccc----ccc------------
Q 000778 1011 KGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--IL-A---QVGADVPAEIF----EIS------------ 1068 (1288)
Q Consensus 1011 ~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--il-a---q~G~~vPa~~~----~l~------------ 1068 (1288)
+++.++++.+++. ..|+..+|+|+||+|||||||+|+--. ++ . -.|+++++... .+.
T Consensus 91 G~k~LL~~a~L~L-~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~ 169 (582)
T KOG0062|consen 91 GGKILLNKANLTL-SRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELL 169 (582)
T ss_pred cchhhhcCCceee-ecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhh
Confidence 4678899999998 789999999999999999999999611 11 1 12666665321 111
Q ss_pred -------hHHHHHHhcCch-hhHhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcc
Q 000778 1069 -------PVDRIFVRMGAK-DHIMAGQSTFLTELS-ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKV 1139 (1288)
Q Consensus 1069 -------~~d~i~~~ig~~-d~i~~~~Stf~~e~~-~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~ 1139 (1288)
+.+.++..+|-. +-+.+...+|+++.+ +++.+.++..+|+||||||| |+++|..+++| +-+|| ...
T Consensus 170 ~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEP---TNhLDv~av~W-Le~yL-~t~ 244 (582)
T KOG0062|consen 170 AGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEP---TNHLDVVAVAW-LENYL-QTW 244 (582)
T ss_pred ccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCC---cccchhHHHHH-HHHHH-hhC
Confidence 122233344433 334455677887764 57777888899999999999 99999999998 44455 455
Q ss_pred CcEEEEEcCCchhhhhhcCCCceEEee
Q 000778 1140 QCRGLFSTHYHRLAVDYKKDPRVSLCH 1166 (1288)
Q Consensus 1140 ~~~vl~~TH~~~l~~~~~~~~~v~~~~ 1166 (1288)
+.|+|+|+||..+....+. .|+.+|
T Consensus 245 ~~T~liVSHDr~FLn~V~t--dIIH~~ 269 (582)
T KOG0062|consen 245 KITSLIVSHDRNFLNTVCT--DIIHLE 269 (582)
T ss_pred CceEEEEeccHHHHHHHHH--HHHHHh
Confidence 7899999999998877765 444444
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-13 Score=172.20 Aligned_cols=147 Identities=15% Similarity=0.109 Sum_probs=102.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------hh--cCccccccc----cccchHHH-------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------AQ--VGADVPAEI----FEISPVDR------- 1072 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------aq--~G~~vPa~~----~~l~~~d~------- 1072 (1288)
..+.+|++|++ .+|++++|+||||||||||||+|+|+... .. .-.|+|+.. ..+++.+.
T Consensus 337 ~~~l~~isl~i-~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~ 415 (556)
T PRK11819 337 RLLIDDLSFSL-PPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDI 415 (556)
T ss_pred eeeecceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhccc
Confidence 46899999999 78999999999999999999999986421 10 013555542 11222222
Q ss_pred ------------HHHhcCchh-hHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc
Q 000778 1073 ------------IFVRMGAKD-HIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHK 1138 (1288)
Q Consensus 1073 ------------i~~~ig~~d-~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~ 1138 (1288)
++.++|... ......+++|+ +.++++.++.++.+|.|+|||||++|.|+.....+. .+|..+
T Consensus 416 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~--- 491 (556)
T PRK11819 416 IKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALE-EALLEF--- 491 (556)
T ss_pred ccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH-HHHHhC---
Confidence 233444432 23444567774 555677788889999999999998888877555443 333333
Q ss_pred cCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1139 VQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1139 ~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
+.++|++||+.+++..+++ +|.+++.
T Consensus 492 -~~tvi~vtHd~~~~~~~~d--~i~~l~~ 517 (556)
T PRK11819 492 -PGCAVVISHDRWFLDRIAT--HILAFEG 517 (556)
T ss_pred -CCeEEEEECCHHHHHHhCC--EEEEEEC
Confidence 3489999999999999888 7777664
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-13 Score=140.65 Aligned_cols=137 Identities=18% Similarity=0.157 Sum_probs=86.1
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh-------------------cCcc---ccccccccch
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-------------------VGAD---VPAEIFEISP 1069 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq-------------------~G~~---vPa~~~~l~~ 1069 (1288)
...+..+++|.+ ..|+++.|+||||+|||||||+|+|+.-... .-.| -|+-...++.
T Consensus 14 e~~lf~~L~f~l-~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 14 ERTLFSDLSFTL-NAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred cceeecceeEEE-cCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence 468889999998 7899999999999999999999999652110 0000 1111222333
Q ss_pred HHHH------------------HHhcCchhhHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHH
Q 000778 1070 VDRI------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDGQAIAES 1130 (1288)
Q Consensus 1070 ~d~i------------------~~~ig~~d~i~~~~Stf~~e~~~-~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~a 1130 (1288)
+..+ +..+|..+........+|.++++ ++.+.-.+..++|.|||||+.+.|.. +.++..+
T Consensus 93 ~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~-g~a~l~~ 171 (209)
T COG4133 93 LENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE-GVALLTA 171 (209)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHH-HHHHHHH
Confidence 2221 22333333333344556655555 55555568999999999997776665 4433334
Q ss_pred HHHHHHhccCcEEEEEcCCch
Q 000778 1131 VLEHFVHKVQCRGLFSTHYHR 1151 (1288)
Q Consensus 1131 ile~l~~~~~~~vl~~TH~~~ 1151 (1288)
++..-+. .|..||++||..-
T Consensus 172 l~~~H~~-~GGiVllttHq~l 191 (209)
T COG4133 172 LMAAHAA-QGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHhc-CCCEEEEecCCcc
Confidence 4433333 3788999999854
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-13 Score=141.24 Aligned_cols=158 Identities=18% Similarity=0.234 Sum_probs=110.0
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh-----------------hcCcc---ccccc-----cc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA-----------------QVGAD---VPAEI-----FE 1066 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila-----------------q~G~~---vPa~~-----~~ 1066 (1288)
.+.++++++|++ ..|+|+.|+|.||+|||||++.|+|-..+- +...+ |.+.. ..
T Consensus 18 ek~~l~~~sL~I-~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 18 EKRALNGLSLEI-AEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred HHHHHhcCceee-cCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 368999999999 889999999999999999999999844220 00000 00000 01
Q ss_pred cchHH---------------------------HHHHh--cCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1067 ISPVD---------------------------RIFVR--MGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1067 l~~~d---------------------------~i~~~--ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
+.+.. .-+++ +|.+..+.....-|++ +.+-++.+++.+.+|.+++|||-+
T Consensus 97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHT 176 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHT 176 (263)
T ss_pred ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchh
Confidence 11111 11111 2334444444555664 444567777889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
+..||.-...+ ...-+.+.++.+.|++++||.++.+..+.+ +.+++|.|.++-+
T Consensus 177 AALDPkta~~v-m~lT~kiV~~~klTtlMVTHnm~~Al~yG~--RlImLh~G~IvlD 230 (263)
T COG1101 177 AALDPKTAEFV-MELTAKIVEEHKLTTLMVTHNMEDALDYGN--RLIMLHSGKIVLD 230 (263)
T ss_pred hcCCcchHHHH-HHHHHHHHHhcCCceEEEeccHHHHHhhCC--eEEEEeCCeEEEE
Confidence 88888755544 355556667778999999999999999888 9999999988754
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.9e-13 Score=157.26 Aligned_cols=222 Identities=19% Similarity=0.172 Sum_probs=135.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEEecCCCCccccccCCCCcccccc
Q 000778 939 RLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPND 1018 (1288)
Q Consensus 939 ~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~nd 1018 (1288)
+++.-+++-...|.....-.+..|.+.+|-..-......-..+... ..+.+++. ..|--+.. ..++.+++|
T Consensus 269 Eff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~-----~~~~~ei~-~~~l~~~y---~~g~~~l~~ 339 (559)
T COG4988 269 EFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVA-----NEPPIEIS-LENLSFRY---PDGKPALSD 339 (559)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccc-----cCCCceee-ecceEEec---CCCCcccCC
Confidence 3344445555556666677888888887754322110100011111 11233443 11222211 134589999
Q ss_pred cccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccccc--ch-------
Q 000778 1019 ITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIFEI--SP------- 1069 (1288)
Q Consensus 1019 i~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~~l--~~------- 1069 (1288)
++|++ .+|+.++|+|+||||||||+..|+|..-. -+.-++||+..--+ ++
T Consensus 340 l~~t~-~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~ 418 (559)
T COG4988 340 LNLTI-KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLA 418 (559)
T ss_pred ceeEe-cCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhcc
Confidence 99999 88999999999999999999999985410 11123444332100 01
Q ss_pred --------HHHHHHhcCchhhHh----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHH
Q 000778 1070 --------VDRIFVRMGAKDHIM----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAES 1130 (1288)
Q Consensus 1070 --------~d~i~~~ig~~d~i~----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~a 1130 (1288)
+.+...+.|+.+-+. .+-+.+| ++.+|++.++++..+++|+|+||||++.|...-. +...
T Consensus 419 ~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~-~i~~ 497 (559)
T COG4988 419 RPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQ-IILQ 497 (559)
T ss_pred CCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHH-HHHH
Confidence 112233333333333 3333444 6788999999999999999999996666665444 3445
Q ss_pred HHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1131 VLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1131 ile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
.+.++.+ +.|+|++||.++.+..+ | +|+++..|+++..|.+
T Consensus 498 ~l~~l~~--~ktvl~itHrl~~~~~~-D--~I~vld~G~l~~~g~~ 538 (559)
T COG4988 498 ALQELAK--QKTVLVITHRLEDAADA-D--RIVVLDNGRLVEQGTH 538 (559)
T ss_pred HHHHHHh--CCeEEEEEcChHHHhcC-C--EEEEecCCceeccCCH
Confidence 5555644 47999999999887664 3 7999999999988753
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-13 Score=159.40 Aligned_cols=156 Identities=18% Similarity=0.168 Sum_probs=112.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------------hhcCccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------------AQVGADVPAEI 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------------aq~G~~vPa~~ 1064 (1288)
-...++|+|++ .+|++.+|+|.||+||||||+++.|+.-. .|.-..||.-.
T Consensus 17 ~~And~V~l~v-~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lT 95 (501)
T COG3845 17 VVANDDVSLSV-KKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLT 95 (501)
T ss_pred EEecCceeeee-cCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccc
Confidence 35667899999 89999999999999999999999986521 12222222211
Q ss_pred c----ccc----------------hHHHHHHhcCchhhHhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChHH
Q 000778 1065 F----EIS----------------PVDRIFVRMGAKDHIMAGQSTFLTELSETALML-SSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1065 ~----~l~----------------~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il-~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
. -++ -+..+..++|..=+.....+.+++.+++...|+ .+..++.||||||||+=..|.+
T Consensus 96 V~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E 175 (501)
T COG3845 96 VAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175 (501)
T ss_pred hhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 0 000 012233444444444445566665555555555 4689999999999999999998
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
...+. .++..|.+. |++|||+||-+..+..+++ ++.++..|..++.
T Consensus 176 ~~~lf-~~l~~l~~~-G~tIi~ITHKL~Ev~~iaD--rvTVLR~Gkvvgt 221 (501)
T COG3845 176 ADELF-EILRRLAAE-GKTIIFITHKLKEVMAIAD--RVTVLRRGKVVGT 221 (501)
T ss_pred HHHHH-HHHHHHHHC-CCEEEEEeccHHHHHHhhC--eeEEEeCCeEEee
Confidence 88765 678888765 9999999999999999999 9999998877643
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-13 Score=171.63 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=102.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------hh--cCcccccccc----ccchHH--------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------AQ--VGADVPAEIF----EISPVD-------- 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------aq--~G~~vPa~~~----~l~~~d-------- 1071 (1288)
..+.++++|.+ .+|++++|+||||||||||||+|+|+... .. .-.|+|+... .+++.+
T Consensus 335 ~~~l~~isl~i-~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~ 413 (552)
T TIGR03719 335 KLLIDDLSFKL-PPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDI 413 (552)
T ss_pred eeeeccceEEE-cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccc
Confidence 46899999999 78999999999999999999999986421 10 0124554321 112222
Q ss_pred -----------HHHHhcCchh-hHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc
Q 000778 1072 -----------RIFVRMGAKD-HIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHK 1138 (1288)
Q Consensus 1072 -----------~i~~~ig~~d-~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~ 1138 (1288)
.++.++|..+ ......+++|+ +.++++.++.++.+|+++|||||++|.|+.....+. .++..+
T Consensus 414 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~--- 489 (552)
T TIGR03719 414 IQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALE-EALLEF--- 489 (552)
T ss_pred cccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHC---
Confidence 2334455432 23445567774 555677788889999999999998888877544433 333333
Q ss_pred cCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1139 VQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1139 ~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
+.++|++||+.+++..+++ +|.+++.
T Consensus 490 -~~~viivsHd~~~~~~~~d--~i~~l~~ 515 (552)
T TIGR03719 490 -AGCAVVISHDRWFLDRIAT--HILAFEG 515 (552)
T ss_pred -CCeEEEEeCCHHHHHHhCC--EEEEEEC
Confidence 3489999999999998888 7777764
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-12 Score=160.72 Aligned_cols=172 Identities=18% Similarity=0.121 Sum_probs=113.7
Q ss_pred eEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------
Q 000778 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------- 1053 (1288)
Q Consensus 993 ~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------- 1053 (1288)
.+.+++....+-. .+..+++|++|++ .+|+.++|+||||||||||++.++|..-.
T Consensus 316 ~i~~~~v~~~y~~-----~~~~~l~~~~~~i-~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 316 HLSVENVTIVPPG-----GKKPTLRGISFRL-QAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389 (544)
T ss_pred eEEEEEEEEEcCC-----CCccccccceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH
Confidence 4667665433211 1247899999999 78999999999999999999999985411
Q ss_pred -hhcCccccccccc--cchHHHHH---------------HhcCchhhHh-----------hcccchH-HHHHHHHHHHHh
Q 000778 1054 -AQVGADVPAEIFE--ISPVDRIF---------------VRMGAKDHIM-----------AGQSTFL-TELSETALMLSS 1103 (1288)
Q Consensus 1054 -aq~G~~vPa~~~~--l~~~d~i~---------------~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~ 1103 (1288)
.+.-.+||++..- -++.+.+. ...+..+.+. .+..+++ +|.++++.+.++
T Consensus 390 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARal 469 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL 469 (544)
T ss_pred HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHH
Confidence 1122456655311 12223321 1112222111 1223444 677888999999
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1104 ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1104 a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.+|+++|||||++|.|+.....+. ..+..+.. .++|+|++||..+... .++ +|.+++.|.++..|+
T Consensus 470 l~~~~ililDEpts~LD~~~~~~i~-~~l~~~~~-~~~tvi~ith~~~~~~-~~d--~i~~l~~G~i~~~g~ 536 (544)
T TIGR01842 470 YGDPKLVVLDEPNSNLDEEGEQALA-NAIKALKA-RGITVVVITHRPSLLG-CVD--KILVLQDGRIARFGE 536 (544)
T ss_pred hcCCCEEEEeCCccccCHHHHHHHH-HHHHHHhh-CCCEEEEEeCCHHHHH-hCC--EEEEEECCEEEeeCC
Confidence 9999999999997777776544443 34444432 3689999999998764 466 889999998887664
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-12 Score=165.16 Aligned_cols=169 Identities=17% Similarity=0.175 Sum_probs=115.7
Q ss_pred eEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------
Q 000778 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------- 1052 (1288)
Q Consensus 993 ~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-------------------- 1052 (1288)
.|.+++...-+-. .+..+++|++|++ .+|+.++|+||||||||||+|.|+|+.-
T Consensus 451 ~I~~~nvsf~Y~~-----~~~~vL~~isl~i-~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~ 524 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----DGPLILDDVSLQI-EPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQA 524 (686)
T ss_pred eEEEEEEEEEcCC-----CCccceeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHH
Confidence 3666655432211 1357999999999 8999999999999999999999998541
Q ss_pred HhhcCccccccccc--cchHHHH--------------HHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhC
Q 000778 1053 LAQVGADVPAEIFE--ISPVDRI--------------FVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSA 1104 (1288)
Q Consensus 1053 laq~G~~vPa~~~~--l~~~d~i--------------~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a 1104 (1288)
+.+.-++||++..- -++.+.| ....|..+.+.. +-..++ +|.++++.+++++
T Consensus 525 lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll 604 (686)
T TIGR03797 525 VRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV 604 (686)
T ss_pred HHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 12233567766421 1122222 223344443321 123455 6778899999999
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1105 TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1105 ~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+|+++|||||+++.|+..-. .+.+.|.+ .++|+|++||.++.... +| +|.+++.|.++..|+
T Consensus 605 ~~p~iLiLDEpTS~LD~~te~----~i~~~L~~-~~~T~IiItHr~~~i~~-~D--~Iivl~~G~iv~~G~ 667 (686)
T TIGR03797 605 RKPRILLFDEATSALDNRTQA----IVSESLER-LKVTRIVIAHRLSTIRN-AD--RIYVLDAGRVVQQGT 667 (686)
T ss_pred cCCCEEEEeCCccCCCHHHHH----HHHHHHHH-hCCeEEEEecChHHHHc-CC--EEEEEECCEEEEECC
Confidence 999999999996666665433 34455543 36899999999988765 55 899999999888764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=131.89 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=109.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCc-----------ccccccc----------------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA-----------DVPAEIF---------------- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~-----------~vPa~~~---------------- 1065 (1288)
..++-||+|+. ..|+.+++.||+|+|||||||.+.++-. +..|- -.|.+.+
T Consensus 15 ~q~lfdi~l~~-~~getlvllgpsgagkssllr~lnlle~-p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~ 92 (242)
T COG4161 15 HQALFDITLDC-PEGETLVLLGPSGAGKSSLLRVLNLLEM-PRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92 (242)
T ss_pred chheeeeeecC-CCCCEEEEECCCCCchHHHHHHHHHHhC-CCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhc
Confidence 46788999998 7899999999999999999999987542 22221 1122110
Q ss_pred ---ccchHH----------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1066 ---EISPVD----------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1066 ---~l~~~d----------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
.+.+.. .++.|+...+......-.++ ++.++++.+.+++.+|.++|+|||++..
T Consensus 93 lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaal 172 (242)
T COG4161 93 LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172 (242)
T ss_pred cCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCccccc
Confidence 011111 12222222222222222223 4556788888899999999999998877
Q ss_pred ChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1120 s~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
||.-. +....|++.|.. .|.|-+++||..+.+...+. +|+.|..|.+++.|+
T Consensus 173 dpeit-aqvv~iikel~~-tgitqvivthev~va~k~as--~vvyme~g~ive~g~ 224 (242)
T COG4161 173 DPEIT-AQIVSIIKELAE-TGITQVIVTHEVEVARKTAS--RVVYMENGHIVEQGD 224 (242)
T ss_pred CHHHH-HHHHHHHHHHHh-cCceEEEEEeehhHHHhhhh--heEeeecCeeEeecc
Confidence 77643 344588898865 59999999999999999888 899999999998875
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-13 Score=169.77 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=115.4
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc---ccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF---EIS 1068 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~---~l~ 1068 (1288)
.+.+++|+++.+ .+|++++|+||||+||||||++|+|..-. .+.-+|||++.. .++
T Consensus 37 ~~~iL~~vs~~i-~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 37 RKHLLKNVSGVA-KPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred ccccccCCEEEE-eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 467999999999 89999999999999999999999985321 111245665431 122
Q ss_pred h------------------------HHHHHHhcCchhhHhhcc------cchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1069 P------------------------VDRIFVRMGAKDHIMAGQ------STFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1069 ~------------------------~d~i~~~ig~~d~i~~~~------Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
+ ++.++..+|..+...... ..++ +|.++++.+.+++.+|++++||||++
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 2 233344444433211111 1344 67788899999999999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCch-hhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHR-LAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~-l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
|.|+.....+. .+++.++++ |.|+|++||++. .+...++ ++.+++.|.++..|..
T Consensus 196 gLD~~~~~~l~-~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D--~i~ll~~G~~v~~G~~ 251 (617)
T TIGR00955 196 GLDSFMAYSVV-QVLKGLAQK-GKTIICTIHQPSSELFELFD--KIILMAEGRVAYLGSP 251 (617)
T ss_pred chhHHHHHHHH-HHHHHHHhC-CCEEEEEeCCCCHHHHHHhc--eEEEeeCCeEEEECCH
Confidence 88888766554 566677654 899999999985 5566777 8999999999988753
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.7e-13 Score=134.51 Aligned_cols=157 Identities=21% Similarity=0.200 Sum_probs=109.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC------------------------------ccc--
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG------------------------------ADV-- 1060 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G------------------------------~~v-- 1060 (1288)
..-..||+|.. .+|++++|+|.+||||||||++|.+-. +.+.| .||
T Consensus 19 ~~gc~~vsF~l-~PGeVLgiVGESGSGKtTLL~~is~rl-~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQ 96 (258)
T COG4107 19 GKGCRDVSFDL-YPGEVLGIVGESGSGKTTLLKCISGRL-TPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred CcCccccceee-cCCcEEEEEecCCCcHHhHHHHHhccc-CCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeec
Confidence 34567899998 899999999999999999999998622 11111 122
Q ss_pred -ccccccc------chHHHH------------------HHhcCc-hhhHhhcccchHHHHHHHHHH-HHhCCCCcEEEEe
Q 000778 1061 -PAEIFEI------SPVDRI------------------FVRMGA-KDHIMAGQSTFLTELSETALM-LSSATRNSLVVLD 1113 (1288)
Q Consensus 1061 -Pa~~~~l------~~~d~i------------------~~~ig~-~d~i~~~~Stf~~e~~~~~~i-l~~a~~~sLvLLD 1113 (1288)
|+...++ .+-.++ +.++.. .+.+..-..+|++.|++...| ..+.+.|.||+||
T Consensus 97 nP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMD 176 (258)
T COG4107 97 NPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMD 176 (258)
T ss_pred CccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEec
Confidence 2111000 011111 111111 123344467999999875544 5568999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1114 ELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1114 Epg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
||+-|.+.. .++....++.-|..+.+..++++|||+..+..+++ +..+|..|.+++.|
T Consensus 177 EPTGGLDVS-VQARLLDllrgLv~~l~la~viVTHDl~VarLla~--rlmvmk~g~vve~G 234 (258)
T COG4107 177 EPTGGLDVS-VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAD--RLMVMKQGQVVESG 234 (258)
T ss_pred CCCCCcchh-hHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhh--cceeecCCCEeccc
Confidence 997666655 44445578888888889999999999999999998 88899999888776
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=153.12 Aligned_cols=211 Identities=19% Similarity=0.251 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEE-----ecCCCCcccccc
Q 000778 935 SILQRLIGQFCE-HHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISA-----KSLGHPVLRSDS 1008 (1288)
Q Consensus 935 ~il~~l~~~~~~-~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i-----~~~rHP~l~~~~ 1008 (1288)
.....++.++.. +...-+++....-.+|-+..-...- .| +. ..++.+ ...-||++...+
T Consensus 330 ~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~e--------k~-~~------~k~l~~~f~~vg~~p~pvi~~~n 394 (614)
T KOG0927|consen 330 AHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTE--------KV-VG------EKVLSFRFPEVGKIPPPVIMVQN 394 (614)
T ss_pred HHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccc--------cc-cC------CceEEEEcccccCCCCCeEEEec
Confidence 345666666654 3344567777777777665321111 11 10 011121 112366665544
Q ss_pred CCC----CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcccccccccc-----------------
Q 000778 1009 LGK----GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEI----------------- 1067 (1288)
Q Consensus 1009 l~~----~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l----------------- 1067 (1288)
++- +..+.++++|++ +.+..++++||||+|||||||++.+.. ...+|...|.....+
T Consensus 395 v~F~y~~~~~iy~~l~fgi-d~~srvAlVGPNG~GKsTLlKl~~gdl-~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~ 472 (614)
T KOG0927|consen 395 VSFGYSDNPMIYKKLNFGI-DLDSRVALVGPNGAGKSTLLKLITGDL-QPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSS 472 (614)
T ss_pred cccCCCCcchhhhhhhccc-CcccceeEecCCCCchhhhHHHHhhcc-ccccccccccccccchhhhhhhHhhcCcchhH
Confidence 432 225889999998 678899999999999999999999743 233343333222222
Q ss_pred --------------chHHHHHHhcCch-hhHhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHH
Q 000778 1068 --------------SPVDRIFVRMGAK-DHIMAGQSTFLTELS-ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1068 --------------~~~d~i~~~ig~~-d~i~~~~Stf~~e~~-~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ai 1131 (1288)
..+..|+-|+|.. +......++++.+++ ++..+......|.||||||| |+++|...+- ++
T Consensus 473 le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEP---tnhLDi~tid-~l 548 (614)
T KOG0927|consen 473 LEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEP---TNHLDIETID-AL 548 (614)
T ss_pred HHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCC---CcCCCchhHH-HH
Confidence 2234456677765 555566777885554 56666667899999999999 5555543332 33
Q ss_pred HHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEE
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMAC 1169 (1288)
Q Consensus 1132 le~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~ 1169 (1288)
-++| +++..++|++|||..++..+++ .|..+..++
T Consensus 549 aeai-Ne~~Ggvv~vSHDfrlI~qVae--Ei~~c~~~~ 583 (614)
T KOG0927|consen 549 AEAI-NEFPGGVVLVSHDFRLISQVAE--EIWVCENGT 583 (614)
T ss_pred HHHH-hccCCceeeeechhhHHHHHHH--HhHhhccCc
Confidence 3444 4567789999999999988877 554444443
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.1e-13 Score=170.04 Aligned_cols=151 Identities=18% Similarity=0.114 Sum_probs=97.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--HhhcC--ccccccc--cccch-----------------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--LAQVG--ADVPAEI--FEISP----------------- 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--laq~G--~~vPa~~--~~l~~----------------- 1069 (1288)
..+++|++|++ ..|++++|+||||+|||||||+|++..+ ....| .++++.. ..+..
T Consensus 190 ~~ll~~isl~i-~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~ 268 (718)
T PLN03073 190 RDLIVDASVTL-AFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEE 268 (718)
T ss_pred CEEEECCEEEE-CCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHH
Confidence 46899999999 7899999999999999999999987421 01001 0111110 00000
Q ss_pred ----H---------------------------------------------------HHHHHhcCch-hhHhhcccchHH-
Q 000778 1070 ----V---------------------------------------------------DRIFVRMGAK-DHIMAGQSTFLT- 1092 (1288)
Q Consensus 1070 ----~---------------------------------------------------d~i~~~ig~~-d~i~~~~Stf~~- 1092 (1288)
+ ..++..+|.. +.......++|+
T Consensus 269 ~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG 348 (718)
T PLN03073 269 EAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGG 348 (718)
T ss_pred HHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHH
Confidence 0 0111122221 112334566775
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEE
Q 000778 1093 ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQV 1171 (1288)
Q Consensus 1093 e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~ 1171 (1288)
+.++++.+..++.+|.|||||||+.|.|+. ++. .+.+.| ++.+.++|++||+.+++..+++ +|..++.|.+.
T Consensus 349 ~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~---~~~-~l~~~L-~~~~~tviivsHd~~~l~~~~d--~i~~l~~g~i~ 420 (718)
T PLN03073 349 WRMRIALARALFIEPDLLLLDEPTNHLDLH---AVL-WLETYL-LKWPKTFIVVSHAREFLNTVVT--DILHLHGQKLV 420 (718)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHH---HHH-HHHHHH-HHcCCEEEEEECCHHHHHHhCC--EEEEEECCEEE
Confidence 445677777789999999999995555444 433 344444 3457899999999999999888 88888877653
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-12 Score=161.33 Aligned_cols=156 Identities=19% Similarity=0.165 Sum_probs=109.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccccc--chH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFEI--SPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~l--~~~ 1070 (1288)
..+.+|++|++ .+|+.++|+|+||||||||+|.|+++.- +.+.-++||++..-+ ++.
T Consensus 354 ~~il~~i~l~i-~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~ 432 (592)
T PRK10790 354 NLVLQNINLSV-PSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFL 432 (592)
T ss_pred CceeeceeEEE-cCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHH
Confidence 46899999999 8999999999999999999999998542 122335677664211 122
Q ss_pred HH--------------HHHhcCchhhHhh---cc--------cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1071 DR--------------IFVRMGAKDHIMA---GQ--------STFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1071 d~--------------i~~~ig~~d~i~~---~~--------Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
+. .....|..+.+.. |. ..++ +|.++++.+++++.+|+++|||||+++.|+...
T Consensus 433 ~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~ 512 (592)
T PRK10790 433 ANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTE 512 (592)
T ss_pred HHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 22 2333444443322 22 2344 688889999999999999999999777776654
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+. ..+..+. .++|+|++||.++.... +| +|.+++.|.++..|+
T Consensus 513 ~~i~-~~l~~~~--~~~tvIivtHr~~~l~~-~D--~ii~l~~G~i~~~G~ 557 (592)
T PRK10790 513 QAIQ-QALAAVR--EHTTLVVIAHRLSTIVE-AD--TILVLHRGQAVEQGT 557 (592)
T ss_pred HHHH-HHHHHHh--CCCEEEEEecchHHHHh-CC--EEEEEECCEEEEEcC
Confidence 4443 3333332 26899999999987765 55 888999998887664
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-12 Score=166.83 Aligned_cols=158 Identities=15% Similarity=0.154 Sum_probs=113.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc---
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF--- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~--- 1065 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+... .+...|+|+...
T Consensus 21 ~~il~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~ 99 (648)
T PRK10535 21 VEVLKGISLDI-YAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLS 99 (648)
T ss_pred eeeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCC
Confidence 35899999999 78999999999999999999999986411 112235554331
Q ss_pred ccchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1066 EISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1066 ~l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+.+.+. ++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 100 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s 179 (648)
T PRK10535 100 HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179 (648)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 1122221 2333444444444556666 45566777888899999999999999988886
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
...+ ..+++++.++ +.++|++||+++++. .++ ++..++.|+++..|..
T Consensus 180 ~~~l-~~ll~~l~~~-g~tilivsH~~~~~~-~~d--~i~~l~~G~i~~~g~~ 227 (648)
T PRK10535 180 GEEV-MAILHQLRDR-GHTVIIVTHDPQVAA-QAE--RVIEIRDGEIVRNPPA 227 (648)
T ss_pred HHHH-HHHHHHHHhc-CCEEEEECCCHHHHH-hCC--EEEEEECCEEEeecCc
Confidence 5544 3666777553 889999999999886 466 8999999999987754
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.1e-12 Score=159.51 Aligned_cols=155 Identities=18% Similarity=0.160 Sum_probs=107.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~--~l~~~ 1070 (1288)
..+.++++|.+ .+|+.++|+|+||+|||||+|.|+|+.- +.+.-+|||++.. .-++.
T Consensus 348 ~~iL~~inl~i-~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~ 426 (588)
T PRK13657 348 RQGVEDVSFEA-KPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIE 426 (588)
T ss_pred CceecceeEEE-CCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHH
Confidence 46899999999 8899999999999999999999998542 1233356776541 11222
Q ss_pred HHH---------------HHhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.| ....+..+.+. .+-..++ +|.++++.+.+++.+|+++|||||+++.|+..
T Consensus 427 ~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t 506 (588)
T PRK13657 427 DNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET 506 (588)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 222 22223332221 1222355 68888999999999999999999988887775
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+. ..+..+. .++|+|++||+.+.... +| +|..++.|.++..|
T Consensus 507 ~~~i~-~~l~~~~--~~~tvIiitHr~~~~~~-~D--~ii~l~~G~i~~~g 551 (588)
T PRK13657 507 EAKVK-AALDELM--KGRTTFIIAHRLSTVRN-AD--RILVFDNGRVVESG 551 (588)
T ss_pred HHHHH-HHHHHHh--cCCEEEEEEecHHHHHh-CC--EEEEEECCEEEEeC
Confidence 55443 3333332 26899999999987754 55 88888888777654
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=165.38 Aligned_cols=155 Identities=15% Similarity=0.091 Sum_probs=108.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~--~l~~~ 1070 (1288)
..+++|++|++ .+|+.++|+||+|||||||++.|+++. . .+.-++||++.. .-++.
T Consensus 363 ~~vL~~i~l~i-~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~ 440 (588)
T PRK11174 363 KTLAGPLNFTL-PAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLR 440 (588)
T ss_pred CeeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHH
Confidence 47899999999 899999999999999999999999865 2 112246666531 11222
Q ss_pred HHH---------------HHhcCchhhHhh---cc--------cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIMA---GQ--------STFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~~---~~--------Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.| ....++.+.+.. |. ..+| +|.++++.+++++.+|+++|||||+++.|+..
T Consensus 441 eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~t 520 (588)
T PRK11174 441 DNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520 (588)
T ss_pred HHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 222 112233332221 22 2344 67888999999999999999999977777665
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
...+.. .+..+. .+.|+|++||.++.... +| +|.+++.|.+++.|+
T Consensus 521 e~~i~~-~l~~~~--~~~TvIiItHrl~~i~~-aD--~Iivl~~G~i~e~G~ 566 (588)
T PRK11174 521 EQLVMQ-ALNAAS--RRQTTLMVTHQLEDLAQ-WD--QIWVMQDGQIVQQGD 566 (588)
T ss_pred HHHHHH-HHHHHh--CCCEEEEEecChHHHHh-CC--EEEEEeCCeEeecCC
Confidence 554443 334442 36899999999987765 55 889999888887664
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.8e-12 Score=158.02 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=106.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~--~l~~~ 1070 (1288)
..+.++++|.+ .+|+.++|+||||+|||||+++|+|+.-. .+.-++||++.. .-++.
T Consensus 348 ~~~l~~i~~~i-~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 426 (585)
T TIGR01192 348 SQGVFDVSFEA-KAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIR 426 (585)
T ss_pred CccccceeEEE-cCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHH
Confidence 46899999999 78999999999999999999999985411 122245665531 11222
Q ss_pred HHH---------------HHhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.+ ....+..+.+. .+...++ +|.++++.+++++.+|+++|||||++|.|+..
T Consensus 427 ~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~ 506 (585)
T TIGR01192 427 ENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506 (585)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 222 11112222221 1122344 67788999999999999999999988888876
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+. ..+..+. .+.|+|++||+.+.... ++ +|.+++.|.++..|
T Consensus 507 ~~~i~-~~l~~~~--~~~tvI~isH~~~~~~~-~d--~i~~l~~G~i~~~g 551 (585)
T TIGR01192 507 EARVK-NAIDALR--KNRTTFIIAHRLSTVRN-AD--LVLFLDQGRLIEKG 551 (585)
T ss_pred HHHHH-HHHHHHh--CCCEEEEEEcChHHHHc-CC--EEEEEECCEEEEEC
Confidence 55543 4444442 27899999999988754 66 88889888877655
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-12 Score=163.53 Aligned_cols=156 Identities=19% Similarity=0.177 Sum_probs=110.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~--~l~~~ 1070 (1288)
..+++|++|++ .+|++++|+||||+|||||++.|++..- +.+.-++||++.. .-++.
T Consensus 353 ~~il~~i~~~i-~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 431 (574)
T PRK11160 353 QPVLKGLSLQI-KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLR 431 (574)
T ss_pred CcceecceEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHH
Confidence 46899999999 7899999999999999999999998531 1122346666531 11122
Q ss_pred H---------------HHHHhcCchhhHhh----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1071 D---------------RIFVRMGAKDHIMA----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1071 d---------------~i~~~ig~~d~i~~----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
+ ..+...+..+.+.. +-..++ +|.++++.+.+++.+|+++|||||+++.|+...
T Consensus 432 ~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~ 511 (574)
T PRK11160 432 DNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE 511 (574)
T ss_pred HHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 2 22334455554443 223355 677889999999999999999999777777755
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+. ..+..+. .++|+|++||.++.+.. ++ +|.+++.|.++..|+
T Consensus 512 ~~i~-~~l~~~~--~~~tviiitHr~~~~~~-~d--~i~~l~~G~i~~~g~ 556 (574)
T PRK11160 512 RQIL-ELLAEHA--QNKTVLMITHRLTGLEQ-FD--RICVMDNGQIIEQGT 556 (574)
T ss_pred HHHH-HHHHHHc--CCCEEEEEecChhHHHh-CC--EEEEEeCCeEEEeCC
Confidence 5444 3344442 27899999999988765 55 899999998887664
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-12 Score=176.96 Aligned_cols=159 Identities=11% Similarity=0.071 Sum_probs=111.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
..+++|+++.+ .+|++++|+|||||||||||++|+|..-. .+.-.||++... .+++.
T Consensus 893 ~~iL~~vs~~i-~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 893 LQLLREVTGAF-RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971 (1470)
T ss_pred ceEeeCcEEEE-ECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHH
Confidence 46899999999 78999999999999999999999985310 011134554321 12222
Q ss_pred H------------------------HHHHhcCchhhHhhcc-----cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1071 D------------------------RIFVRMGAKDHIMAGQ-----STFL-TELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1071 d------------------------~i~~~ig~~d~i~~~~-----Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
+ .++..+|..+...... ..++ +|.++++.+..++.+|+|||||||++|.|
T Consensus 972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 2 2333334332221111 3455 55667888888999999999999999998
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchh-hhhhcCCCceEEeee-EEEEecCCC
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRL-AVDYKKDPRVSLCHM-ACQVGNGVG 1176 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l-~~~~~~~~~v~~~~~-~~~~~~g~~ 1176 (1288)
+.....+ ..+|+.++++ |.++|++||+++. +...++ ++.+++. |.++..|..
T Consensus 1052 ~~~a~~v-~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D--~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1052 ARAAAIV-MRTVRNTVDT-GRTVVCTIHQPSIDIFEAFD--ELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred HHHHHHH-HHHHHHHHHC-CCEEEEEeCCCCHHHHHhCC--EEEEEcCCCEEEEECCc
Confidence 8865544 4677777665 8899999999984 556677 8888886 788777653
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=159.12 Aligned_cols=156 Identities=16% Similarity=0.124 Sum_probs=109.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCccccccccc--cchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFE--ISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~--l~~~ 1070 (1288)
..+++|++|++ .+|+.++|+||||||||||+|+|+++.- +.+.-.+||++..- -++.
T Consensus 478 ~~vL~~i~l~i-~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~ 556 (694)
T TIGR03375 478 TPALDNVSLTI-RPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLR 556 (694)
T ss_pred ccceeeeeEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHH
Confidence 47899999999 8999999999999999999999998531 12233467765321 1222
Q ss_pred HHH---------------HHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.| ....++.+.+.. +-..++ ++.++++.+.+++.+|+++|||||+++.|+..
T Consensus 557 eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~t 636 (694)
T TIGR03375 557 DNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636 (694)
T ss_pred HHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 222 222333333322 123455 67788899999999999999999988887776
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
...+... +..+. .++|+|++||.++.... ++ +|.+++.|.++..|+
T Consensus 637 e~~i~~~-l~~~~--~~~T~iiItHrl~~~~~-~D--~iivl~~G~i~e~G~ 682 (694)
T TIGR03375 637 EERFKDR-LKRWL--AGKTLVLVTHRTSLLDL-VD--RIIVMDNGRIVADGP 682 (694)
T ss_pred HHHHHHH-HHHHh--CCCEEEEEecCHHHHHh-CC--EEEEEeCCEEEeeCC
Confidence 5555433 34443 26899999999987754 55 899999998887664
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-12 Score=160.90 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=107.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCccccccccc----c-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFE----I- 1067 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~----l- 1067 (1288)
..+++|++|.+ .+|+.++|+||||+|||||++.|+|+.- +.+.-.+||++..- +
T Consensus 336 ~~~l~~i~~~i-~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 414 (547)
T PRK10522 336 GFSVGPINLTI-KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLG 414 (547)
T ss_pred CeEEecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhc
Confidence 46899999999 7899999999999999999999998531 11122355554310 0
Q ss_pred --------chHHHHHHhcCchhhHhhc-----ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHH
Q 000778 1068 --------SPVDRIFVRMGAKDHIMAG-----QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLE 1133 (1288)
Q Consensus 1068 --------~~~d~i~~~ig~~d~i~~~-----~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile 1133 (1288)
..+......++..+.+..+ -..++ ++.++++.+.+++.+|+++|||||++|.|+.....+...+.+
T Consensus 415 ~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~ 494 (547)
T PRK10522 415 PEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLP 494 (547)
T ss_pred cccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 0111233344444333221 12455 677788888899999999999999888888766555444444
Q ss_pred HHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1134 HFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1134 ~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
.+ +..++|+|++||.++... .++ +|.+++.|.+++.
T Consensus 495 ~~-~~~~~tvi~itH~~~~~~-~~d--~i~~l~~G~i~e~ 530 (547)
T PRK10522 495 LL-QEMGKTIFAISHDDHYFI-HAD--RLLEMRNGQLSEL 530 (547)
T ss_pred HH-HhCCCEEEEEEechHHHH-hCC--EEEEEECCEEEEe
Confidence 33 223789999999987755 455 8888888887754
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-12 Score=156.75 Aligned_cols=172 Identities=17% Similarity=0.152 Sum_probs=114.1
Q ss_pred eEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------
Q 000778 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------- 1053 (1288)
Q Consensus 993 ~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------- 1053 (1288)
.|.+++.....-+ ..++.+.++++|++ .+|+.++|+||||+|||||+|+|+|+.-.
T Consensus 337 ~i~~~~v~f~y~~----~~~~~iL~~inl~i-~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~ 411 (576)
T TIGR02204 337 EIEFEQVNFAYPA----RPDQPALDGLNLTV-RPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE 411 (576)
T ss_pred eEEEEEEEEECCC----CCCCccccceeEEe-cCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHH
Confidence 4677665432211 11257899999999 89999999999999999999999985421
Q ss_pred -hhcCcccccccc--ccchHHHH---------------HHhcCchhhHh-----------hcccchH-HHHHHHHHHHHh
Q 000778 1054 -AQVGADVPAEIF--EISPVDRI---------------FVRMGAKDHIM-----------AGQSTFL-TELSETALMLSS 1103 (1288)
Q Consensus 1054 -aq~G~~vPa~~~--~l~~~d~i---------------~~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~ 1103 (1288)
.+.-+|+|++.. .-++.+.| +...|..+.+. .+...++ +|.++++.+.++
T Consensus 412 ~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal 491 (576)
T TIGR02204 412 LRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI 491 (576)
T ss_pred HHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 112346666541 11222222 12223222221 1223454 688889999999
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1104 ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1104 a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.+|+++|||||+++.|+..... ....+..+. .++|+|++||..+.... ++ +|..+..|.++..|.
T Consensus 492 ~~~~~ililDEpts~lD~~~~~~-i~~~l~~~~--~~~t~IiitH~~~~~~~-~d--~vi~l~~g~~~~~g~ 557 (576)
T TIGR02204 492 LKDAPILLLDEATSALDAESEQL-VQQALETLM--KGRTTLIIAHRLATVLK-AD--RIVVMDQGRIVAQGT 557 (576)
T ss_pred HhCCCeEEEeCcccccCHHHHHH-HHHHHHHHh--CCCEEEEEecchHHHHh-CC--EEEEEECCEEEeeec
Confidence 99999999999977777764433 334444442 26899999999988754 55 888888888876653
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.8e-12 Score=146.63 Aligned_cols=156 Identities=20% Similarity=0.185 Sum_probs=113.4
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH-------------------HHhhcCcccccccccc--chH
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------------ILAQVGADVPAEIFEI--SPV 1070 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~-------------------ilaq~G~~vPa~~~~l--~~~ 1070 (1288)
++.|+++++|++ .+|+-++|+|+|||||||+||+|.... -+.|+-.+||++..-+ +++
T Consensus 364 k~~iL~gvsf~I-~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl 442 (591)
T KOG0057|consen 364 KRKVLKGVSFTI-PKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTIL 442 (591)
T ss_pred CCceecceeEEe-cCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHH
Confidence 356999999999 899999999999999999999998642 2456667899876321 111
Q ss_pred ---------------HHHHHhcCchhhHhhc---ccch---------HHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 ---------------DRIFVRMGAKDHIMAG---QSTF---------LTELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 ---------------d~i~~~ig~~d~i~~~---~Stf---------~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
-.+..+.|..|.+..- .+|. -+|+++++.+.+.+.+|.++|+||| ||.+|
T Consensus 443 ~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEa---TS~LD 519 (591)
T KOG0057|consen 443 YNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEA---TSALD 519 (591)
T ss_pred HHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCc---ccccc
Confidence 1233455666655442 2222 1788999999999999999999999 66666
Q ss_pred HHHHHHHHHHHHHh-ccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVH-KVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~-~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
...- ..+++.+.. ..+.|+||+-|++.++..+. +|.++..|.+...|+
T Consensus 520 ~~TE-~~i~~~i~~~~~~rTvI~IvH~l~ll~~~D---kI~~l~nG~v~e~gt 568 (591)
T KOG0057|consen 520 SETE-REILDMIMDVMSGRTVIMIVHRLDLLKDFD---KIIVLDNGTVKEYGT 568 (591)
T ss_pred hhhH-HHHHHHHHHhcCCCeEEEEEecchhHhcCC---EEEEEECCeeEEecc
Confidence 4432 244555443 24789999999999987744 788899888877664
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-12 Score=167.18 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=109.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~--~l~~~ 1070 (1288)
..+++|++|++ .+|+.++|+||||||||||+|.|+|+.- +.+.-++||++.. .-++.
T Consensus 492 ~~vL~~isl~i-~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~ 570 (710)
T TIGR03796 492 PPLIENFSLTL-QPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVR 570 (710)
T ss_pred CCcccceeEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHH
Confidence 47899999999 8999999999999999999999998531 1222346776541 11222
Q ss_pred HHH---------------HHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.| ....++.+.+.. +-..++ +|.++++.+.+++.+|+++|||||+++.|+..
T Consensus 571 eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~t 650 (710)
T TIGR03796 571 DNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET 650 (710)
T ss_pred HHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHH
Confidence 222 122233332221 123344 67788999999999999999999966665553
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.. .+++.|.+ .++|+|++||.++.+.. +| +|.++..|.++..|+
T Consensus 651 e~----~i~~~l~~-~~~T~IiitHrl~~i~~-~D--~Iivl~~G~i~~~G~ 694 (710)
T TIGR03796 651 EK----IIDDNLRR-RGCTCIIVAHRLSTIRD-CD--EIIVLERGKVVQRGT 694 (710)
T ss_pred HH----HHHHHHHh-cCCEEEEEecCHHHHHh-CC--EEEEEeCCEEEEecC
Confidence 33 45555554 48999999999988765 66 899999999988774
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-12 Score=165.21 Aligned_cols=143 Identities=16% Similarity=0.131 Sum_probs=97.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC----------cccccccc--ccchHH---------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----------ADVPAEIF--EISPVD--------- 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G----------~~vPa~~~--~l~~~d--------- 1071 (1288)
..+.+|++|++ .+|++++|+||||||||||+|+|+|+.- ...| .+||++.. ..++.+
T Consensus 465 ~~il~~isl~i-~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 465 DVLIESLSFEV-PSGNHLLICGPNGCGKSSLFRILGELWP-VYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred CeeeecceEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 46899999999 7899999999999999999999999642 1112 35565421 001222
Q ss_pred -------------HHHHhcCchhhHhhc---------ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1072 -------------RIFVRMGAKDHIMAG---------QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1072 -------------~i~~~ig~~d~i~~~---------~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
.++..++..+.+... ...++ +|.++++.+.+++.+|+++|||||++|.|+....
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~--- 619 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG--- 619 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH---
Confidence 223344444433321 14566 5667788888899999999999997777776333
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEe
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLC 1165 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~ 1165 (1288)
.+.+.+.+ .++|+|++||++++.. .++ ++.++
T Consensus 620 -~l~~~l~~-~~~tvI~isH~~~~~~-~~d--~il~l 651 (659)
T TIGR00954 620 -YMYRLCRE-FGITLFSVSHRKSLWK-YHE--YLLYM 651 (659)
T ss_pred -HHHHHHHH-cCCEEEEEeCchHHHH-hCC--EEEEE
Confidence 33444433 4899999999999864 355 56555
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-12 Score=138.31 Aligned_cols=141 Identities=19% Similarity=0.155 Sum_probs=85.9
Q ss_pred cccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh--------------hcC------------ccccccccc-c--
Q 000778 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA--------------QVG------------ADVPAEIFE-I-- 1067 (1288)
Q Consensus 1017 ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila--------------q~G------------~~vPa~~~~-l-- 1067 (1288)
.++++++ .+| +++|+||||+||||||++|+++.-.. ..| .+|++.... +
T Consensus 14 ~~~~l~~-~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~ 91 (197)
T cd03278 14 DKTTIPF-PPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSI 91 (197)
T ss_pred CCeeeec-CCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeE
Confidence 4556666 557 99999999999999999998764110 001 122221110 0
Q ss_pred ---chHHHHHHhcCchhhHhhcccchHHHH-HHHHHHHHh----CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcc
Q 000778 1068 ---SPVDRIFVRMGAKDHIMAGQSTFLTEL-SETALMLSS----ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKV 1139 (1288)
Q Consensus 1068 ---~~~d~i~~~ig~~d~i~~~~Stf~~e~-~~~~~il~~----a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~ 1139 (1288)
.-++.++.. .+........++.++ ++++.+..+ +.+|.++|||||++|.|+.....+. .++..+.+
T Consensus 92 ~~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~-~~l~~~~~-- 165 (197)
T cd03278 92 ISQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFA-RLLKEFSK-- 165 (197)
T ss_pred EehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcc--
Confidence 112333333 122223344555444 444444443 2577999999999999888666544 56666643
Q ss_pred CcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1140 QCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1140 ~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
+.++|++||+++++. .++ ++..+++.
T Consensus 166 ~~tiIiitH~~~~~~-~~d--~v~~~~~~ 191 (197)
T cd03278 166 ETQFIVITHRKGTME-AAD--RLYGVTMQ 191 (197)
T ss_pred CCEEEEEECCHHHHh-hcc--eEEEEEec
Confidence 588999999999864 566 66665553
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-12 Score=160.33 Aligned_cols=156 Identities=14% Similarity=0.119 Sum_probs=106.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccccc--cchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIFE--ISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~~--l~~~ 1070 (1288)
..++++++|.+ .+|+.++|+||||||||||+++|+|+.-. .+.-.++|++..- -++.
T Consensus 328 ~~~l~~i~~~i-~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 406 (569)
T PRK10789 328 HPALENVNFTL-KPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVA 406 (569)
T ss_pred CccccCeeEEE-CCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHH
Confidence 47899999999 78999999999999999999999985411 1222455654311 1122
Q ss_pred HHH---------------HHhcCchhhHhh---c--------ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIMA---G--------QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~~---~--------~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.| ....+..+.+.. + ...++ +|.++++.+.+++.+|+++|||||++|.|+..
T Consensus 407 ~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~ 486 (569)
T PRK10789 407 NNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486 (569)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHH
Confidence 222 122233322211 1 12344 67778899999999999999999988877776
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
...+.. .+..+. .++|+|++||..+.... ++ +|..++.|.++..|+
T Consensus 487 ~~~i~~-~l~~~~--~~~tii~itH~~~~~~~-~d--~i~~l~~G~i~~~g~ 532 (569)
T PRK10789 487 EHQILH-NLRQWG--EGRTVIISAHRLSALTE-AS--EILVMQHGHIAQRGN 532 (569)
T ss_pred HHHHHH-HHHHHh--CCCEEEEEecchhHHHc-CC--EEEEEeCCEEEEecC
Confidence 554443 344442 37899999999987654 55 788888888776653
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-12 Score=161.03 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=107.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~--~l~~~ 1070 (1288)
.+++++++|.+ .+|+.++|+|+||+|||||++.|+|+.- +.+.-+|+|++.. .-++.
T Consensus 345 ~~il~~inl~i-~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 423 (571)
T TIGR02203 345 RPALDSISLVI-EPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA 423 (571)
T ss_pred CccccCeeEEe-cCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHH
Confidence 47899999999 7899999999999999999999998541 1223356776531 11111
Q ss_pred H----------------HHHHhcCchhhHhh---c--------ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1071 D----------------RIFVRMGAKDHIMA---G--------QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1071 d----------------~i~~~ig~~d~i~~---~--------~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
+ ..+...|..+.+.. | -..++ +|.++++.+++++.+|+++|||||+++.|..
T Consensus 424 ~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~ 503 (571)
T TIGR02203 424 NNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE 503 (571)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 2 12333344433322 1 12355 7888899999999999999999996666666
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
....+. ..+..+. .++|+|++||+..+... ++ +|.+++.|.++..|+
T Consensus 504 ~~~~i~-~~L~~~~--~~~tiIiitH~~~~~~~-~D--~ii~l~~g~i~~~g~ 550 (571)
T TIGR02203 504 SERLVQ-AALERLM--QGRTTLVIAHRLSTIEK-AD--RIVVMDDGRIVERGT 550 (571)
T ss_pred HHHHHH-HHHHHHh--CCCEEEEEehhhHHHHh-CC--EEEEEeCCEEEeeCC
Confidence 555443 3333332 36899999999987654 55 788888887776553
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-12 Score=161.12 Aligned_cols=156 Identities=17% Similarity=0.109 Sum_probs=107.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCccccccccc--cchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFE--ISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~--l~~~ 1070 (1288)
..++++++|++ .+|+.++|+||||+|||||+|.|+|+.- +.+.-+|||++..- -++.
T Consensus 356 ~~il~~i~l~i-~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 434 (582)
T PRK11176 356 VPALRNINFKI-PAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIA 434 (582)
T ss_pred CccccCceEEe-CCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHH
Confidence 57899999999 7899999999999999999999998541 12233567766321 1122
Q ss_pred HHHH----------------HhcCchhhHh---hcc--------cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1071 DRIF----------------VRMGAKDHIM---AGQ--------STFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1071 d~i~----------------~~ig~~d~i~---~~~--------Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
+.|. ...|..+.+. .|+ ..++ +|.++++.+++++.+|+++|||||+++.|+.
T Consensus 435 ~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~ 514 (582)
T PRK11176 435 NNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514 (582)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHH
Confidence 2221 1223222221 122 2355 6788899999999999999999996666665
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
....+..+ +..+. .++|+|++||..+.... ++ +|.+++.|.+++.|+
T Consensus 515 t~~~i~~~-l~~~~--~~~tvI~VtHr~~~~~~-~D--~Ii~l~~g~i~e~g~ 561 (582)
T PRK11176 515 SERAIQAA-LDELQ--KNRTSLVIAHRLSTIEK-AD--EILVVEDGEIVERGT 561 (582)
T ss_pred HHHHHHHH-HHHHh--CCCEEEEEecchHHHHh-CC--EEEEEECCEEEEeCC
Confidence 44444333 33332 36899999999988765 66 899999998887664
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-12 Score=141.69 Aligned_cols=147 Identities=22% Similarity=0.201 Sum_probs=90.8
Q ss_pred cccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------hhcCccccccccccc-----------------
Q 000778 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------AQVGADVPAEIFEIS----------------- 1068 (1288)
Q Consensus 1017 ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------aq~G~~vPa~~~~l~----------------- 1068 (1288)
++++|....+|++++|+||||+||||+|++|.+..+- ...-...+ ..+.+.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~v~~~f~~~~~~~~~~r~~g 96 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGE-DTAEVSFTFQLGGKKYRVERSRG 96 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCC-ccEEEEEEEEECCeEEEEEEecC
Confidence 5666654235789999999999999999999842210 00000000 000000
Q ss_pred h----HHH-HHHhcC-chhhHhhcccchHHH-HHHHHHHHHhCC----------CCcEEEEeCCCCCCChHHHHHHHHHH
Q 000778 1069 P----VDR-IFVRMG-AKDHIMAGQSTFLTE-LSETALMLSSAT----------RNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1069 ~----~d~-i~~~ig-~~d~i~~~~Stf~~e-~~~~~~il~~a~----------~~sLvLLDEpg~GTs~~Dg~aia~ai 1131 (1288)
+ +.+ ++...+ ..+.+.....++++. .++++.+.+++. +|+++|||||++|+|+.....+ ..+
T Consensus 97 l~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~-~~~ 175 (213)
T cd03279 97 LDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAV-ATA 175 (213)
T ss_pred CCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHH-HHH
Confidence 0 111 111112 334444555667644 445555555542 6789999999999998866655 456
Q ss_pred HHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1132 le~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
++.+.++ +.++|++||+++++..+++ .+.+++.|
T Consensus 176 l~~~~~~-~~tii~itH~~~~~~~~~~--~i~~~~~~ 209 (213)
T cd03279 176 LELIRTE-NRMVGVISHVEELKERIPQ--RLEVIKTP 209 (213)
T ss_pred HHHHHhC-CCEEEEEECchHHHHhhCc--EEEEEecC
Confidence 6677554 7899999999999988887 66666544
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=158.12 Aligned_cols=156 Identities=17% Similarity=0.122 Sum_probs=109.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCccccccccc--cchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFE--ISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~--l~~~ 1070 (1288)
..++++++|.+ .+|+.++|+|+||||||||+|+|+|+.- +.+.-++||++..- -++.
T Consensus 470 ~~il~~i~l~i-~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~ 548 (694)
T TIGR01846 470 PEVLSNLNLDI-KPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIR 548 (694)
T ss_pred ccccccceEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHH
Confidence 46899999999 7899999999999999999999998531 12223466665311 1112
Q ss_pred HHH---------------HHhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.+ ....+..+.+. .+-..++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 549 eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~ 628 (694)
T TIGR01846 549 DNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628 (694)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 221 22233333322 1223455 67778888889999999999999977777765
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
...+. ..+..+. .++|+|++||..+.... ++ +|.+++.|.++..|+
T Consensus 629 ~~~i~-~~l~~~~--~~~t~i~itH~~~~~~~-~d--~ii~l~~G~i~~~g~ 674 (694)
T TIGR01846 629 EALIM-RNMREIC--RGRTVIIIAHRLSTVRA-CD--RIIVLEKGQIAESGR 674 (694)
T ss_pred HHHHH-HHHHHHh--CCCEEEEEeCChHHHHh-CC--EEEEEeCCEEEEeCC
Confidence 54443 3334442 37899999999998765 66 899999998887664
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-12 Score=174.50 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=110.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH---H----------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---L----------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i---l----------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
+.+++|+++.+ .+|++++|+|||||||||||++|++..- . .+.-.|||+... .+++.
T Consensus 776 ~~iL~~vs~~i-~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 776 RVILNNVDGWV-KPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854 (1394)
T ss_pred cEeeeCCEEEE-ECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHH
Confidence 57899999999 7899999999999999999999998642 1 011235555421 12222
Q ss_pred H------------------------HHHHhcCchhhHhhccc----chH-HHHHHHHHHHHhCCCCc-EEEEeCCCCCCC
Q 000778 1071 D------------------------RIFVRMGAKDHIMAGQS----TFL-TELSETALMLSSATRNS-LVVLDELGRGTS 1120 (1288)
Q Consensus 1071 d------------------------~i~~~ig~~d~i~~~~S----tf~-~e~~~~~~il~~a~~~s-LvLLDEpg~GTs 1120 (1288)
+ .++..++..+....... .++ +|.++++.+++++.+|+ +||||||++|.|
T Consensus 855 E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD 934 (1394)
T TIGR00956 855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934 (1394)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCC
Confidence 2 23333333332222222 455 56667788888999996 999999988888
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh-hhhcCCCceEEeeeE-EEEecCCC
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA-VDYKKDPRVSLCHMA-CQVGNGVG 1176 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~-~~~~~~~~v~~~~~~-~~~~~g~~ 1176 (1288)
+.....+ ..+|+.++++ |+|+|++||+++.. ...++ ++.+++.| .++..|..
T Consensus 935 ~~~~~~i-~~~L~~la~~-g~tvI~t~H~~~~~~~~~~D--~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 935 SQTAWSI-CKLMRKLADH-GQAILCTIHQPSAILFEEFD--RLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred HHHHHHH-HHHHHHHHHc-CCEEEEEecCCCHHHHHhcC--EEEEEcCCCEEEEECCc
Confidence 8765544 4677777654 89999999999853 34566 88888886 88877753
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.5e-12 Score=148.02 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=112.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC---------------------cccccccc--ccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG---------------------ADVPAEIF--EISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G---------------------~~vPa~~~--~l~~ 1069 (1288)
..+++|++|++ .+|+.++|+|++||||||++..+++.. ..|.| +++++..- .-++
T Consensus 351 ~~~L~~~~l~l-~~GEkvAIlG~SGsGKSTllqLl~~~~-~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tl 428 (573)
T COG4987 351 TKALKNFNLTL-AQGEKVAILGRSGSGKSTLLQLLAGAW-DPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTL 428 (573)
T ss_pred cchhhccceee-cCCCeEEEECCCCCCHHHHHHHHHhcc-CCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHH
Confidence 57999999999 889999999999999999999999622 22222 22222110 0001
Q ss_pred ---------------HHHHHHhcCchhhHhhc-----------ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1070 ---------------VDRIFVRMGAKDHIMAG-----------QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1070 ---------------~d~i~~~ig~~d~i~~~-----------~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
+-.++..+|.++.+... -..|| +|.++++.+..+..+.+++||||||-|.|+.
T Consensus 429 r~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~ 508 (573)
T COG4987 429 RDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPI 508 (573)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChh
Confidence 11234455555544332 12344 7888999998889999999999999999988
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
.-..+..-+.+++. +.|+||+||....+..+ + +|+++..|.++.+|..
T Consensus 509 TE~~vL~ll~~~~~---~kTll~vTHrL~~le~~-d--rIivl~~Gkiie~G~~ 556 (573)
T COG4987 509 TERQVLALLFEHAE---GKTLLMVTHRLRGLERM-D--RIIVLDNGKIIEEGTH 556 (573)
T ss_pred hHHHHHHHHHHHhc---CCeEEEEecccccHhhc-C--EEEEEECCeeeecCCH
Confidence 77666656666552 67999999998877653 3 8999999999988753
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.9e-12 Score=157.62 Aligned_cols=156 Identities=16% Similarity=0.214 Sum_probs=107.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc----cc-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF----EI- 1067 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~----~l- 1067 (1288)
.+++++++|.+ .+|++++|+||||+|||||++.|++..-. ...-.+||++.. .+
T Consensus 355 ~~~l~~vs~~i-~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~ 433 (555)
T TIGR01194 355 GFALGPIDLRI-AQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIG 433 (555)
T ss_pred CceeccceEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhh
Confidence 36899999999 78999999999999999999999984311 111224444321 00
Q ss_pred ---------chHHHHHHhcCchhhHhh---cc---cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHH
Q 000778 1068 ---------SPVDRIFVRMGAKDHIMA---GQ---STFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1068 ---------~~~d~i~~~ig~~d~i~~---~~---Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ai 1131 (1288)
.-+.......+..+.+.. |. ..+| +|.++++.+.+++.+|+++|||||++|.|+.....+...+
T Consensus 434 ~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 434 PDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred cccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 001122334444443321 22 3455 6778889999999999999999998888887666555555
Q ss_pred HHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1132 le~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
++.+.. .+.|+|++||+++... .++ +|.+++.|++++.
T Consensus 514 ~~~~~~-~~~tiiiisH~~~~~~-~~d--~i~~l~~G~i~~~ 551 (555)
T TIGR01194 514 LPDLKR-QGKTIIIISHDDQYFE-LAD--QIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHh-CCCEEEEEeccHHHHH-hCC--EEEEEECCEEEEe
Confidence 554433 3789999999998654 466 8888888887653
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-12 Score=163.97 Aligned_cols=154 Identities=19% Similarity=0.134 Sum_probs=106.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~--~l~~~ 1070 (1288)
..+++|++|++ .+|+.++|+||||||||||++.|+++.- +.+.-++||++.. .-++.
T Consensus 494 ~~vL~~isl~i-~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIr 572 (711)
T TIGR00958 494 VPVLKGLTFTL-HPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVR 572 (711)
T ss_pred CccccCceEEE-cCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHH
Confidence 57899999999 8999999999999999999999998541 1223356776541 11222
Q ss_pred HHH---------------HHhcCchhhHhh---c--------ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIMA---G--------QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~~---~--------~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
|+| ....++.+.+.. + -..++ +|.++++.+.+++.+|+++|||||+++.|+..
T Consensus 573 eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~t 652 (711)
T TIGR00958 573 ENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC 652 (711)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHH
Confidence 222 222333332221 1 12344 67888999999999999999999966655542
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
- ..+.+ .....++|+|++||.++.... +| +|.++..|.+++.|+
T Consensus 653 e----~~i~~-~~~~~~~TvIiItHrl~~i~~-aD--~IivL~~G~ive~Gt 696 (711)
T TIGR00958 653 E----QLLQE-SRSRASRTVLLIAHRLSTVER-AD--QILVLKKGSVVEMGT 696 (711)
T ss_pred H----HHHHH-hhccCCCeEEEEeccHHHHHh-CC--EEEEEECCEEEEeeC
Confidence 2 23333 323347899999999987654 55 899999999988775
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=157.66 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=106.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~--~l~~~ 1070 (1288)
..+++|++|++ .+|+.++|+||||||||||+|.|+++.- +.+.-++||++.. .-++.
T Consensus 487 ~~iL~~isl~i-~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~ 565 (708)
T TIGR01193 487 SNILSDISLTI-KMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSIL 565 (708)
T ss_pred CcceeceeEEE-CCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHH
Confidence 46899999999 8899999999999999999999998541 1222346776531 11122
Q ss_pred HHH----------------HHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1071 DRI----------------FVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1071 d~i----------------~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
+.| ....++.+.+.. +-..++ +|.++++.+++++.+|+++|||||+++.|+.
T Consensus 566 eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~ 645 (708)
T TIGR01193 566 ENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTI 645 (708)
T ss_pred HHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 222 222233333321 123344 6778899999999999999999997777665
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.-..+. +.|.+..++|+|++||..+.... ++ +|.+++.|.++..|+
T Consensus 646 te~~i~----~~L~~~~~~T~IiitHr~~~~~~-~D--~i~~l~~G~i~~~G~ 691 (708)
T TIGR01193 646 TEKKIV----NNLLNLQDKTIIFVAHRLSVAKQ-SD--KIIVLDHGKIIEQGS 691 (708)
T ss_pred HHHHHH----HHHHHhcCCEEEEEecchHHHHc-CC--EEEEEECCEEEEECC
Confidence 444333 33322237899999999987754 56 899999999887764
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-12 Score=174.54 Aligned_cols=158 Identities=11% Similarity=0.020 Sum_probs=111.5
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH---H----------------h----hcCccccccc---ccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---L----------------A----QVGADVPAEI---FEI 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i---l----------------a----q~G~~vPa~~---~~l 1067 (1288)
.+++|+++.+ .+|++++|+||||||||||||+|+|... . . +.-.||++.. ..+
T Consensus 75 ~iL~~vs~~i-~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 75 DILKPMDGLI-KPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred eeeeCCEEEE-ECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 5788999998 7899999999999999999999998530 0 0 0013444432 112
Q ss_pred chHHH-----------------------------HHHhcCchhhHhhc-----ccchH-HHHHHHHHHHHhCCCCcEEEE
Q 000778 1068 SPVDR-----------------------------IFVRMGAKDHIMAG-----QSTFL-TELSETALMLSSATRNSLVVL 1112 (1288)
Q Consensus 1068 ~~~d~-----------------------------i~~~ig~~d~i~~~-----~Stf~-~e~~~~~~il~~a~~~sLvLL 1112 (1288)
++.+. ++..+|..+..... ...++ +|.++++.+..++.+|+++||
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlll 233 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCW 233 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEE
Confidence 22222 22333333221110 12344 577788888889999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCc-hhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1113 DELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYH-RLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1113 DEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~-~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|||++|.|+.....+. .+|+.++++.|.++|++||+. +.+..+++ +|.+++.|.++..|.
T Consensus 234 DEPTsgLD~~~~~~i~-~~L~~la~~~g~tvii~~Hq~~~~i~~l~D--~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 234 DNATRGLDSATALEFI-RALKTSANILDTTPLVAIYQCSQDAYELFD--KVIVLYEGYQIYFGP 294 (1394)
T ss_pred eCCCCCcCHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHhhc--eEEEEeCCeEEEECC
Confidence 9999999998766654 677777765588999999996 56777777 899999999888774
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=139.06 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=66.6
Q ss_pred hcCchh-hHhhcccchHH-HHHHHHHHHHhCCC---CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCc
Q 000778 1076 RMGAKD-HIMAGQSTFLT-ELSETALMLSSATR---NSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1076 ~ig~~d-~i~~~~Stf~~-e~~~~~~il~~a~~---~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
++|... .+.+..+++++ |.++++.+..++.+ |+|+|||||++|.++.+...+. .++..+.+. |.++|++||++
T Consensus 155 ~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~-~~L~~l~~~-g~tvIiitH~~ 232 (261)
T cd03271 155 DVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVDK-GNTVVVIEHNL 232 (261)
T ss_pred HcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEeCCH
Confidence 344443 34455667774 45566666666664 7999999999999999877664 566777654 88999999999
Q ss_pred hhhhhhcCCCceEEe------eeEEEEecC
Q 000778 1151 RLAVDYKKDPRVSLC------HMACQVGNG 1174 (1288)
Q Consensus 1151 ~l~~~~~~~~~v~~~------~~~~~~~~g 1174 (1288)
+++. .++ ++..+ +.|.++..|
T Consensus 233 ~~i~-~aD--~ii~Lgp~~g~~~G~iv~~G 259 (261)
T cd03271 233 DVIK-CAD--WIIDLGPEGGDGGGQVVASG 259 (261)
T ss_pred HHHH-hCC--EEEEecCCcCCCCCEEEEeC
Confidence 9876 466 77777 556665544
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-12 Score=167.60 Aligned_cols=156 Identities=13% Similarity=0.099 Sum_probs=116.6
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH----------------------HhhcCccccccccccc----
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------------LAQVGADVPAEIFEIS---- 1068 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i----------------------laq~G~~vPa~~~~l~---- 1068 (1288)
+.+++++.+ .+|++.++.|||||||||+++++.|..- ..++| |.|+..+-..
T Consensus 580 Av~~ls~~V-~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iG-yCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAV-PPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLG-YCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEe-cCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcc-cCCchhhhhhhccH
Confidence 788999999 8899999999999999999999998431 12233 5555432110
Q ss_pred --------------------hHHHHHHhcCchhhHhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1069 --------------------PVDRIFVRMGAKDHIMAGQSTFLTELS-ETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1069 --------------------~~d~i~~~ig~~d~i~~~~Stf~~e~~-~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.++.++..++..+......++++++++ ++..+++++.+|++|+||||+.|.||.. .-.
T Consensus 658 rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~a-rr~ 736 (885)
T KOG0059|consen 658 REHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKA-RRH 736 (885)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHH-HHH
Confidence 112223334444444444566776665 4788888999999999999999999975 445
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
.|.++..+.++ |..+|++||+++.+..+|+ ++.+|..|....-|+.
T Consensus 737 lW~ii~~~~k~-g~aiiLTSHsMeE~EaLCt--R~aImv~G~l~ciGs~ 782 (885)
T KOG0059|consen 737 LWDIIARLRKN-GKAIILTSHSMEEAEALCT--RTAIMVIGQLRCIGSP 782 (885)
T ss_pred HHHHHHHHHhc-CCEEEEEcCCHHHHHHHhh--hhheeecCeeEEecCh
Confidence 78999998775 4499999999999999999 8888888888876653
|
|
| >PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=125.05 Aligned_cols=129 Identities=27% Similarity=0.419 Sum_probs=83.9
Q ss_pred cEEEEEEecCCCCCCCCCCCEEEEEEEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhhcC
Q 000778 453 SYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTR 532 (1288)
Q Consensus 453 ~yllaI~e~~~~~~~~~~~~~iGva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~ls~~~~~~l~~~~~ 532 (1288)
|||+||.++. ....||+||+|++||+|++++|.| +++|.+.|.+++|+|||++.+..+......+. ...
T Consensus 1 Nyl~aI~~~~-------~~~~~gla~~D~sTGe~~~~~~~d---~~~L~~~L~~~~P~EIi~~~~~~~~~~~~~~~-~~~ 69 (137)
T PF05188_consen 1 NYLAAIYEKN-------DEDSYGLAYIDLSTGEFYVTEFED---YSELKSELARLSPREIIIPEGFSSSDISALLS-SLK 69 (137)
T ss_dssp -EEEEEEEET-------CSSEEEEEEEETTTTEEEEEEEEC---HHHHHHHHHHH-ESEEEEETTCSHHHHHHHHH-CCT
T ss_pred CEEEEEEEec-------CCCEEEEEEEECCCCEEEEEEeCC---HHHHHHHHHhcCCeEEEEcCCCcccccchhhh-hhc
Confidence 6999999951 235699999999999999999998 89999999999999999998876543311111 111
Q ss_pred CCc-cccccCCccccChhhhHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHH
Q 000778 533 NPL-VNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGT 611 (1288)
Q Consensus 533 ~~~-~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algal 611 (1288)
... .....+. .+++.....+.+...|..... ...+ + ...++.+++|+|++
T Consensus 70 ~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~---------------~~~~---~----------~~~~~~~~~Al~al 120 (137)
T PF05188_consen 70 NSFFKVTETPS-WYFDSEFASEDIEEQFGVADL---------------DGFG---L----------EEDKELALSALGAL 120 (137)
T ss_dssp TTCCEEEEETC-GGGSHHHHHHHHHHHCTSSST---------------CCCT---T----------GGGGHHHHHHHHHH
T ss_pred cccceeeecch-hhhhhHHHHHHHHHhhccccc---------------cccC---c----------cCCCHHHHHHHHHH
Confidence 111 1112222 333455556666655532110 0000 0 01357899999999
Q ss_pred HHHHHHhccc
Q 000778 612 LFYLKKSFLD 621 (1288)
Q Consensus 612 l~YL~~~~l~ 621 (1288)
|.||+.++..
T Consensus 121 l~Yl~~t~~~ 130 (137)
T PF05188_consen 121 LKYLEETQKS 130 (137)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHHCcc
Confidence 9999987765
|
It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the connector domain (domain 2) found in proteins of the MutS family. The structure of the MutS connector domain consists of a parallel beta-sheet surrounded by four alpha helices, which is similar to the structure of the Holliday junction resolvase ruvC.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 2WTU_A .... |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.1e-12 Score=141.86 Aligned_cols=174 Identities=18% Similarity=0.212 Sum_probs=119.2
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------ 1053 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------ 1053 (1288)
+.|.+++..--+-. -.....+.++|+|.+ ..|+.++|+|.+|||||.....|.++.--
T Consensus 5 ~lL~v~nLsV~f~~---~~~~~~aVk~isf~i-~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll 80 (534)
T COG4172 5 PLLSIRNLSVAFHQ---EGGTVEAVKGISFDI-EAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80 (534)
T ss_pred cceeeeccEEEEec---CCcceEeeccceeee-cCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence 45666655433321 123467899999999 89999999999999999999988864310
Q ss_pred ------------hhcCccccccc-cccchH----H----------------------HHHHhcCchh---hHhhcccchH
Q 000778 1054 ------------AQVGADVPAEI-FEISPV----D----------------------RIFVRMGAKD---HIMAGQSTFL 1091 (1288)
Q Consensus 1054 ------------aq~G~~vPa~~-~~l~~~----d----------------------~i~~~ig~~d---~i~~~~Stf~ 1091 (1288)
..+|+ +.++. ..+.++ . .++.++|..+ .+......++
T Consensus 81 ~~se~~lr~iRG~~I~M-IFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLS 159 (534)
T COG4172 81 AASERQLRGVRGNKIGM-IFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELS 159 (534)
T ss_pred cCCHHHHhhhcccceEE-EecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccC
Confidence 01111 11111 001111 1 1233333322 2233334445
Q ss_pred -HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH--HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1092 -TELSETALMLSSATRNSLVVLDELGRGTSTSDG--QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1092 -~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg--~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
++.+++..+++++++|+|||.||| |..+|. .+-...+|..|..+.|..+||+|||+.++..+++ +|.+|..|
T Consensus 160 GGqRQRVMIAMALan~P~lLIADEP---TTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~AD--rV~VM~~G 234 (534)
T COG4172 160 GGQRQRVMIAMALANEPDLLIADEP---TTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFAD--RVYVMQHG 234 (534)
T ss_pred cchhhHHHHHHHHcCCCCeEeecCC---cchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhh--hEEEEecc
Confidence 566778888899999999999999 888883 3334477888888889999999999999999999 99999999
Q ss_pred EEEecCC
Q 000778 1169 CQVGNGV 1175 (1288)
Q Consensus 1169 ~~~~~g~ 1175 (1288)
.+++.|.
T Consensus 235 ~ivE~~~ 241 (534)
T COG4172 235 EIVETGT 241 (534)
T ss_pred EEeecCc
Confidence 9998763
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-12 Score=144.87 Aligned_cols=155 Identities=21% Similarity=0.150 Sum_probs=112.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcc------------------------c---cccc-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD------------------------V---PAEI- 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~------------------------v---Pa~~- 1064 (1288)
-.+.++|+|+. ..|+.++|+|.+|||||||=++|..+.- ++ |.. | |-.+
T Consensus 300 ~~AVd~isl~L-~~gqTlGlVGESGSGKsTlG~allrL~~-s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSL 376 (534)
T COG4172 300 LRAVDGISLTL-RRGQTLGLVGESGSGKSTLGLALLRLIP-SQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSL 376 (534)
T ss_pred eEEeccceeEe-cCCCeEEEEecCCCCcchHHHHHHhhcC-cC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCC
Confidence 35779999998 7899999999999999999988876431 11 110 0 1000
Q ss_pred -cccchHH-----------------------HHHHhcCch-hhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1065 -FEISPVD-----------------------RIFVRMGAK-DHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1065 -~~l~~~d-----------------------~i~~~ig~~-d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
.++.+-. ..+..+|.. .........|++ +.++++.+.+++.+|++|+||||
T Consensus 377 sPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEP--- 453 (534)
T COG4172 377 SPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEP--- 453 (534)
T ss_pred CcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCC---
Confidence 0111100 112223322 223334566774 56678888899999999999999
Q ss_pred CChHHH--HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1119 TSTSDG--QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1119 Ts~~Dg--~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
||.+|. ++....+|..|.++.+..-||+|||+..+..+++ +|.+|+.|.+++.|.
T Consensus 454 TSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~--~viVm~~GkiVE~G~ 510 (534)
T COG4172 454 TSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCH--RVIVMRDGKIVEQGP 510 (534)
T ss_pred chHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhc--eEEEEeCCEEeeeCC
Confidence 999983 4445588888888889999999999999999999 999999999999874
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-12 Score=172.89 Aligned_cols=158 Identities=16% Similarity=0.094 Sum_probs=109.7
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh--------------------hcCcccccccc---ccchH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA--------------------QVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila--------------------q~G~~vPa~~~---~l~~~ 1070 (1288)
.|++|+++.+ .+|++++|+||||||||||||+|+|..-.. +.-.||++... .+++.
T Consensus 179 ~IL~~vs~~i-~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 179 TILKDASGII-KPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred eeccCCeEEE-eCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 5788999998 789999999999999999999999853110 11134444321 11222
Q ss_pred H-------------------------------------------------------HHHHhcCchhhH-----hhcccch
Q 000778 1071 D-------------------------------------------------------RIFVRMGAKDHI-----MAGQSTF 1090 (1288)
Q Consensus 1071 d-------------------------------------------------------~i~~~ig~~d~i-----~~~~Stf 1090 (1288)
+ .++..+|..+.. ......+
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 2 222233332211 0011233
Q ss_pred H-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCc-hhhhhhcCCCceEEeeeE
Q 000778 1091 L-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYH-RLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1091 ~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~-~l~~~~~~~~~v~~~~~~ 1168 (1288)
+ +|.++++.+..++.+|++++||||++|.|+.....+. .+|+.+++..|.|+|++||+. +.+..+++ +|.+++.|
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~-~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD--~vilL~~G 414 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIV-KCLQQIVHLTEATVLMSLLQPAPETFDLFD--DIILLSEG 414 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHHhh--eEEEeeCc
Confidence 4 5666777777889999999999999999988777665 566677655588999999986 46667777 89999999
Q ss_pred EEEecCC
Q 000778 1169 CQVGNGV 1175 (1288)
Q Consensus 1169 ~~~~~g~ 1175 (1288)
.++..|.
T Consensus 415 ~ivy~G~ 421 (1470)
T PLN03140 415 QIVYQGP 421 (1470)
T ss_pred eEEEeCC
Confidence 9988774
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.4e-12 Score=171.71 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=109.5
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------hhcCcccccccc--ccchHHHHH--------
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------AQVGADVPAEIF--EISPVDRIF-------- 1074 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------aq~G~~vPa~~~--~l~~~d~i~-------- 1074 (1288)
++.+++|++|.+ .+|++++|+|||||||||||++|+|..-. ...-.|+|+... ..++.+.|.
T Consensus 672 ~~~iL~~isl~i-~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~ 750 (1560)
T PTZ00243 672 PKVLLRDVSVSV-PRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAA 750 (1560)
T ss_pred CceeEeeeEEEE-CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHH
Confidence 356899999999 78999999999999999999999985421 111235665431 112222221
Q ss_pred ------Hhc-----------CchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 000778 1075 ------VRM-----------GAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFV 1136 (1288)
Q Consensus 1075 ------~~i-----------g~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~ 1136 (1288)
... |....+.....+++ ++.++++.+.+++.+|+++|||||+++.|+..+..+...++....
T Consensus 751 ~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~ 830 (1560)
T PTZ00243 751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL 830 (1560)
T ss_pred HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh
Confidence 111 12222223334555 566678888889999999999999888888766666554443332
Q ss_pred hccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1137 HKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1137 ~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+.|+|++||+++++.. ++ +|.+++.|.++..|+
T Consensus 831 --~~~TvIlvTH~~~~~~~-ad--~ii~l~~G~i~~~G~ 864 (1560)
T PTZ00243 831 --AGKTRVLATHQVHVVPR-AD--YVVALGDGRVEFSGS 864 (1560)
T ss_pred --CCCEEEEEeCCHHHHHh-CC--EEEEEECCEEEEecC
Confidence 37899999999998854 66 899999998877664
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-11 Score=166.95 Aligned_cols=77 Identities=8% Similarity=0.088 Sum_probs=58.1
Q ss_pred cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee
Q 000778 1088 STFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH 1166 (1288)
Q Consensus 1088 Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~ 1166 (1288)
+.++ ++.++++.+++++.+|++||||||+++.|+..... ....|+.+.+..+.|+|++||+++.+. .++ +|.+++
T Consensus 578 ~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~-i~~~L~~~~~~~g~TvIiIsHrls~i~-~aD--~Iivl~ 653 (1466)
T PTZ00265 578 SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL-VQKTINNLKGNENRITIIIAHRLSTIR-YAN--TIFVLS 653 (1466)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH-HHHHHHHHhhcCCCEEEEEeCCHHHHH-hCC--EEEEEe
Confidence 3455 56677888889999999999999977777764443 345566664434789999999999874 566 888888
Q ss_pred eE
Q 000778 1167 MA 1168 (1288)
Q Consensus 1167 ~~ 1168 (1288)
.|
T Consensus 654 ~g 655 (1466)
T PTZ00265 654 NR 655 (1466)
T ss_pred CC
Confidence 75
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.4e-12 Score=157.09 Aligned_cols=160 Identities=14% Similarity=0.170 Sum_probs=118.2
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCccccccccc-----
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFE----- 1066 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~----- 1066 (1288)
.+.++++|+... .+|++++|+||.||||||||..++|-.- +..+-+||+++..-
T Consensus 42 ~k~iL~~vsg~~-~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LT 120 (613)
T KOG0061|consen 42 TKTILKGVSGTA-KPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLT 120 (613)
T ss_pred cceeeeCcEEEE-ecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccccc
Confidence 368999999998 8899999999999999999999998431 12223455444321
Q ss_pred ----------------------cchHHHHHHhcCchhhHhhccc-----chH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1067 ----------------------ISPVDRIFVRMGAKDHIMAGQS-----TFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1067 ----------------------l~~~d~i~~~ig~~d~i~~~~S-----tf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
...++.+...+|..+.-..-.. ..+ +|.+|++.++.++++|+++++||||+|
T Consensus 121 V~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 121 VRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 1134556666665522211111 122 799999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchh-hhhhcCCCceEEeeeEEEEecCCC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRL-AVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l-~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
.|...+..+. .+|+.+++. |++||++=|.+.- .-.+.| ++.++..|..+..|..
T Consensus 201 LDS~sA~~vv-~~Lk~lA~~-grtVi~tIHQPss~lf~lFD--~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 201 LDSFSALQVV-QLLKRLARS-GRTVICTIHQPSSELFELFD--KLLLLSEGEVVYSGSP 255 (613)
T ss_pred cchhhHHHHH-HHHHHHHhC-CCEEEEEEeCCcHHHHHHHh--HhhhhcCCcEEEecCH
Confidence 9988777654 788889887 9999999999862 233444 7888999988888753
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-11 Score=152.39 Aligned_cols=141 Identities=23% Similarity=0.200 Sum_probs=96.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~--~l~~~ 1070 (1288)
..+.+|++|.+ .+|+.++|+||||+|||||+|.|+|+.- +.+.-++||++.. .-++.
T Consensus 335 ~~il~~i~l~i-~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~ 413 (529)
T TIGR02857 335 APALRPVSFTV-PPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIA 413 (529)
T ss_pred cccccceeEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHH
Confidence 47899999999 7999999999999999999999998431 1122346666531 11122
Q ss_pred HHH---------------HHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.+ ....+..+.+.. +-..++ +|.++++.+.+++.+|+++|||||+++.|+..
T Consensus 414 ~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~ 493 (529)
T TIGR02857 414 ENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET 493 (529)
T ss_pred HHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 222 222333332221 223455 67778889999999999999999977777776
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
...+... +..+. .++|+|++||+++.... ++
T Consensus 494 ~~~i~~~-l~~~~--~~~t~i~itH~~~~~~~-~d 524 (529)
T TIGR02857 494 EALVTEA-LRALA--QGRTVLLVTHRLALAER-AD 524 (529)
T ss_pred HHHHHHH-HHHhc--CCCEEEEEecCHHHHHh-CC
Confidence 5555433 33332 37899999999988754 44
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-11 Score=170.11 Aligned_cols=157 Identities=17% Similarity=0.118 Sum_probs=111.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh-------cCcccccccc--ccchHHHHH---------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-------VGADVPAEIF--EISPVDRIF--------- 1074 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq-------~G~~vPa~~~--~l~~~d~i~--------- 1074 (1288)
..+++|++|.+ .+|++++|+|||||||||||++|+|..-... .-.|+|+... ..++.+.|.
T Consensus 439 ~~~l~~i~l~i-~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 517 (1490)
T TIGR01271 439 TPVLKNISFKL-EKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYR 517 (1490)
T ss_pred CcceeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHH
Confidence 46899999999 7899999999999999999999998652210 0135555431 112333332
Q ss_pred -----HhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 000778 1075 -----VRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVH 1137 (1288)
Q Consensus 1075 -----~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~ 1137 (1288)
...++.+.+. ....+++ ++.++++.+.+++.+|+++|||||++|.|+..+..+...++..+.+
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~ 597 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMS 597 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc
Confidence 1112222221 1124566 4556788888889999999999999999988877776555555532
Q ss_pred ccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1138 KVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1138 ~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
++|+|++||+++.+.. ++ +|..+..|.++..|.
T Consensus 598 --~~tvilvtH~~~~~~~-ad--~ii~l~~g~i~~~g~ 630 (1490)
T TIGR01271 598 --NKTRILVTSKLEHLKK-AD--KILLLHEGVCYFYGT 630 (1490)
T ss_pred --CCeEEEEeCChHHHHh-CC--EEEEEECCEEEEEcC
Confidence 7899999999998765 66 899999898887664
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-11 Score=151.66 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=109.9
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH---------------------HHhhcCccccccccc--cc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIFE--IS 1068 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~---------------------ilaq~G~~vPa~~~~--l~ 1068 (1288)
++.+.+|++|.+ .+|+.++|+||+||||||+++.+.++. +..++| +||++..- -+
T Consensus 341 ~~~vl~~is~~i-~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~-~V~Qd~~LF~~T 418 (567)
T COG1132 341 KKPVLKDISFSI-EPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG-IVSQDPLLFSGT 418 (567)
T ss_pred CCccccCceEEE-cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc-EEcccceeeccc
Confidence 358999999999 889999999999999999999999743 234455 78866421 12
Q ss_pred hHHHH---------------HHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1069 PVDRI---------------FVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1069 ~~d~i---------------~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
+.+.| ....++.|.+.. +-..++ +|.++++.+++++.+|+++|||||++..|+
T Consensus 419 I~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~ 498 (567)
T COG1132 419 IRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498 (567)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCH
Confidence 22222 111222333322 123344 677889999999999999999999666666
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..-..+..++. .+. + +.|+|+++|.+..... +| +|.++..|.+++.|+
T Consensus 499 ~tE~~I~~~l~-~l~-~-~rT~iiIaHRlsti~~-aD--~IiVl~~G~i~e~G~ 546 (567)
T COG1132 499 ETEALIQDALK-KLL-K-GRTTLIIAHRLSTIKN-AD--RIIVLDNGRIVERGT 546 (567)
T ss_pred HhHHHHHHHHH-HHh-c-CCEEEEEeccHhHHHh-CC--EEEEEECCEEEEecC
Confidence 54444444433 343 2 4689999999988777 66 899999999988875
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-11 Score=143.69 Aligned_cols=150 Identities=19% Similarity=0.176 Sum_probs=97.7
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--HhhcCccc------------------cccc--cccc-
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--LAQVGADV------------------PAEI--FEIS- 1068 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--laq~G~~v------------------Pa~~--~~l~- 1068 (1288)
+..+..|+.|.+ .+|+-++|+|||||||||+|+.|++--+ ..+++.|. ++.. .++.
T Consensus 87 g~~l~kd~~~El-~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~ 165 (614)
T KOG0927|consen 87 GVELIKDVTLEL-NRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEY 165 (614)
T ss_pred CceeeeeeeEEe-cCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHH
Confidence 456778899998 7899999999999999999999997321 12222221 0000 0000
Q ss_pred ---------------hHHHHHHhcC--------------------chhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEE
Q 000778 1069 ---------------PVDRIFVRMG--------------------AKDHIMAGQSTFL-TELSETALMLSSATRNSLVVL 1112 (1288)
Q Consensus 1069 ---------------~~d~i~~~ig--------------------~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLL 1112 (1288)
-++.++.|+. ....+....-.|+ +-+.+++.+..+..+|+||||
T Consensus 166 ~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLL 245 (614)
T KOG0927|consen 166 LAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLL 245 (614)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEe
Confidence 0111222211 1111122233444 344567777778999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhccCc-EEEEEcCCchhhhhhcCCCceEEeeeEE
Q 000778 1113 DELGRGTSTSDGQAIAESVLEHFVHKVQC-RGLFSTHYHRLAVDYKKDPRVSLCHMAC 1169 (1288)
Q Consensus 1113 DEpg~GTs~~Dg~aia~aile~l~~~~~~-~vl~~TH~~~l~~~~~~~~~v~~~~~~~ 1169 (1288)
||| |+++|-.+++| |+.++.+... ++++++|+.++...+|. +|+-++++.
T Consensus 246 DEP---tnhLDleA~~w--Lee~L~k~d~~~lVi~sh~QDfln~vCT--~Ii~l~~kk 296 (614)
T KOG0927|consen 246 DEP---TNHLDLEAIVW--LEEYLAKYDRIILVIVSHSQDFLNGVCT--NIIHLDNKK 296 (614)
T ss_pred cCC---ccCCCHHHHHH--HHHHHHhccCceEEEEecchhhhhhHhh--hhheecccc
Confidence 999 88888888776 4444444455 79999999999999998 777776665
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-11 Score=141.33 Aligned_cols=156 Identities=19% Similarity=0.167 Sum_probs=109.9
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCccccccccc--cch
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFE--ISP 1069 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~--l~~ 1069 (1288)
.+++.++++|.+ .+|+.++|+||+|||||||.|.|.|+.. +...-.|+|++-.- =++
T Consensus 348 ~~pil~~isF~l-~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTI 426 (580)
T COG4618 348 KKPILKGISFAL-QAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTI 426 (580)
T ss_pred CCcceecceeEe-cCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcH
Confidence 368999999999 7899999999999999999999998652 22233477765311 011
Q ss_pred HHHHHHhcC----------------chhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1070 VDRIFVRMG----------------AKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1070 ~d~i~~~ig----------------~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
..+ .+|++ +.|-|. .+-++++ ++.++++.+.++-.+|.||+||||-+..|.
T Consensus 427 aeN-IaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~ 505 (580)
T COG4618 427 AEN-IARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS 505 (580)
T ss_pred HHH-HHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence 111 12222 222222 2234555 577789999999999999999999777777
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.--.+++.+|++ +.. .|+++|++||-..+... .| .|.+++.|.+-.-|
T Consensus 506 ~GE~AL~~Ai~~-~k~-rG~~vvviaHRPs~L~~-~D--kilvl~~G~~~~FG 553 (580)
T COG4618 506 EGEAALAAAILA-AKA-RGGTVVVIAHRPSALAS-VD--KILVLQDGRIAAFG 553 (580)
T ss_pred hHHHHHHHHHHH-HHH-cCCEEEEEecCHHHHhh-cc--eeeeecCChHHhcC
Confidence 655666656554 544 59999999999987654 34 78899988776544
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-12 Score=128.93 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=104.8
Q ss_pred cccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--------------------------HHhhcC-------------cc
Q 000778 1019 ITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------------ILAQVG-------------AD 1059 (1288)
Q Consensus 1019 i~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--------------------------ilaq~G-------------~~ 1059 (1288)
++..+ ..|+++=++||||+||||||-.++|+. +++|.- .+
T Consensus 18 lS~qv-~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~ 96 (248)
T COG4138 18 LSGEV-RAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH 96 (248)
T ss_pred ccccc-ccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc
Confidence 34444 468999999999999999999999843 233321 12
Q ss_pred ccccccccchHHHHHHhcCchhhHhhcccchH-HHHHHHHHHHH-------hCCCCcEEEEeCCCCCCChHHHHHHHHHH
Q 000778 1060 VPAEIFEISPVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLS-------SATRNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1060 vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~-------~a~~~sLvLLDEpg~GTs~~Dg~aia~ai 1131 (1288)
+|+ ...-+.++.|...++..|.+-+..+.++ +|.+++..+.. .-....|+|+|||-++.|...-. ...++
T Consensus 97 qP~-~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~-aLdrl 174 (248)
T COG4138 97 QPD-KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQS-ALDRL 174 (248)
T ss_pred Cch-HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHH-HHHHH
Confidence 333 1223345666667778888877777777 46665533321 12345799999995555544333 34588
Q ss_pred HHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1132 le~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+++++.. |.+||++.||++-+...++ ++.++..|..+..|.
T Consensus 175 l~~~c~~-G~~vims~HDLNhTLrhA~--~~wLL~rG~l~~~G~ 215 (248)
T COG4138 175 LSALCQQ-GLAIVMSSHDLNHTLRHAH--RAWLLKRGKLLASGR 215 (248)
T ss_pred HHHHHhC-CcEEEEeccchhhHHHHHH--HHHHHhcCeEEeecc
Confidence 9999875 9999999999998887777 788888888877764
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-11 Score=120.48 Aligned_cols=140 Identities=17% Similarity=0.139 Sum_probs=92.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH----------------------HhhcCcc------ccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------------LAQVGAD------VPAEI 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i----------------------laq~G~~------vPa~~ 1064 (1288)
...+-++++++ .+|+++-|+||+||||||||.-++|..- -.|+|.. .|.-+
T Consensus 15 ~cLLa~~n~Ti-a~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphls 93 (213)
T COG4136 15 SCLLANVNFTI-AKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93 (213)
T ss_pred ceEEEeeeEEe-cCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccc
Confidence 45566789998 7899999999999999999999987431 0123321 11110
Q ss_pred ----------------cccchHHHHHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1065 ----------------FEISPVDRIFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1065 ----------------~~l~~~d~i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
++-...+.-++++|......+...|+++ +..+++....+...|.++|||||++..|..-....
T Consensus 94 Vg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qf 173 (213)
T COG4136 94 VGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQF 173 (213)
T ss_pred cccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHH
Confidence 1112234445666666555556666774 44567777888899999999999544443323333
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhh
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAV 1154 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~ 1154 (1288)
..-+..++.. .|..++.+|||++.+.
T Consensus 174 R~wVFs~~r~-agiPtv~VTHD~~Dvp 199 (213)
T COG4136 174 RQWVFSEVRA-AGIPTVQVTHDLQDVP 199 (213)
T ss_pred HHHHHHHHHh-cCCCeEEEecccccCC
Confidence 3345555543 5889999999998765
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=159.59 Aligned_cols=159 Identities=14% Similarity=0.062 Sum_probs=108.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh-------hcCcccccccc--ccchHHHHH---------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA-------QVGADVPAEIF--EISPVDRIF--------- 1074 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila-------q~G~~vPa~~~--~l~~~d~i~--------- 1074 (1288)
..+++|++|.+ .+|++++|+|||||||||||++|+|..-.. ..-.|||+... ..++.+.|.
T Consensus 651 ~~~l~~isl~i-~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 729 (1522)
T TIGR00957 651 PPTLNGITFSI-PEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKY 729 (1522)
T ss_pred CceeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHH
Confidence 46899999999 789999999999999999999999854221 11146666531 112222221
Q ss_pred -----HhcCchhhH-----------hhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 000778 1075 -----VRMGAKDHI-----------MAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVH 1137 (1288)
Q Consensus 1075 -----~~ig~~d~i-----------~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~ 1137 (1288)
...+..+.+ .....+++ ++.++++.+.++..+|+++|||||+++.|+.-...+...++.....
T Consensus 730 ~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~ 809 (1522)
T TIGR00957 730 YQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV 809 (1522)
T ss_pred HHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhh
Confidence 111111111 12224455 5667788888899999999999998888777666555444431001
Q ss_pred ccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1138 KVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1138 ~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..++|+|++||+++++.. ++ +|..++.|.++..|+
T Consensus 810 ~~~~tvIlvTH~~~~l~~-~D--~ii~l~~G~i~~~g~ 844 (1522)
T TIGR00957 810 LKNKTRILVTHGISYLPQ-VD--VIIVMSGGKISEMGS 844 (1522)
T ss_pred hcCCEEEEEeCChhhhhh-CC--EEEEecCCeEEeeCC
Confidence 136899999999998866 66 899999998887764
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.3e-11 Score=152.70 Aligned_cols=156 Identities=17% Similarity=0.240 Sum_probs=107.3
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH---------------------HHhhcCccccccc--cccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEI--FEIS 1068 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~---------------------ilaq~G~~vPa~~--~~l~ 1068 (1288)
+..|+++++|.+ ..|++++|+||+||||||+++.|..+. +..|+|. |-++. ...+
T Consensus 365 dv~Il~g~sl~i-~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~igl-V~QePvlF~~t 442 (1228)
T KOG0055|consen 365 DVKILKGVSLKI-PSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGL-VSQEPVLFATT 442 (1228)
T ss_pred cchhhCCeEEEe-CCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCe-eeechhhhccc
Confidence 358999999999 889999999999999999999999743 2344442 22221 1112
Q ss_pred hHHHHHH---------------hcCchhhHh---hcccc--------hH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1069 PVDRIFV---------------RMGAKDHIM---AGQST--------FL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1069 ~~d~i~~---------------~ig~~d~i~---~~~St--------f~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
+.+.|.- ..++.+.+. .+..| ++ ++.+|+|.+.+++.+|.+||||||+++.|+
T Consensus 443 I~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~ 522 (1228)
T KOG0055|consen 443 IRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDA 522 (1228)
T ss_pred HHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCH
Confidence 2222210 011111111 11111 34 455678999999999999999999666666
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.. ..+....|+++. .|.|+|+++|.+..... +| .+.+++.|.+++.|+
T Consensus 523 ~s-e~~Vq~ALd~~~--~grTTivVaHRLStIrn-aD--~I~v~~~G~IvE~G~ 570 (1228)
T KOG0055|consen 523 ES-ERVVQEALDKAS--KGRTTIVVAHRLSTIRN-AD--KIAVMEEGKIVEQGT 570 (1228)
T ss_pred HH-HHHHHHHHHHhh--cCCeEEEEeeehhhhhc-cC--EEEEEECCEEEEecC
Confidence 53 334556666664 37799999999998877 66 899999999999885
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.19 E-value=7e-11 Score=147.38 Aligned_cols=134 Identities=17% Similarity=0.141 Sum_probs=90.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc--ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF--EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~--~l~~~d 1071 (1288)
+.+++|++|++ .+|+.++|+||+|||||||++.|+++.-. .+.-++||++.. .-++.+
T Consensus 348 ~~vL~~isl~i-~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~e 426 (529)
T TIGR02868 348 PPVLDGVSLDL-PPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRD 426 (529)
T ss_pred CceeecceEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHH
Confidence 35899999999 89999999999999999999999985311 112357777642 112222
Q ss_pred H---------------HHHhcCchhhHhh---cc--------cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1072 R---------------IFVRMGAKDHIMA---GQ--------STFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1072 ~---------------i~~~ig~~d~i~~---~~--------Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
. .....++.+.+.. |. ..++ +|.++++.+++++.+|+++|||||+++.|+...
T Consensus 427 NI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te 506 (529)
T TIGR02868 427 NLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTE 506 (529)
T ss_pred HHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 2 2223344443332 21 2344 688889999999999999999999666666544
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCc
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
..+...+ ..+ ..++|+|++||.+
T Consensus 507 ~~I~~~l-~~~--~~~~TvIiItHrl 529 (529)
T TIGR02868 507 SELLEDL-LAA--LSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHH-HHh--cCCCEEEEEecCC
Confidence 4433332 222 1368999999973
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-10 Score=159.78 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=109.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccccc--chH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFEI--SPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~l--~~~ 1070 (1288)
..|++|++|++ .+|+.++|+|++|||||||+++|.++.- +.+.-++||++..-+ ++.
T Consensus 1252 ~~VL~~is~~I-~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIr 1330 (1622)
T PLN03130 1252 PPVLHGLSFEI-SPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330 (1622)
T ss_pred CceecceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHH
Confidence 46899999999 8999999999999999999999998541 122334677764211 111
Q ss_pred HH--------------HHHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1071 DR--------------IFVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1071 d~--------------i~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
+. .+.+.++.+.+.. +-+.|+ ++.++++.+++++.+|++|||||++++.|+..-
T Consensus 1331 eNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te 1410 (1622)
T PLN03130 1331 FNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTD 1410 (1622)
T ss_pred HHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHH
Confidence 11 1223333333322 223566 566778888889999999999999666655533
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
.. ....++.+. .+||+|+++|.++.+.. +| +|.+++.|++++.|++
T Consensus 1411 ~~-Iq~~I~~~~--~~~TvI~IAHRL~tI~~-~D--rIlVLd~G~IvE~Gt~ 1456 (1622)
T PLN03130 1411 AL-IQKTIREEF--KSCTMLIIAHRLNTIID-CD--RILVLDAGRVVEFDTP 1456 (1622)
T ss_pred HH-HHHHHHHHC--CCCEEEEEeCChHHHHh-CC--EEEEEECCEEEEeCCH
Confidence 32 233444332 37999999999998766 45 8999999999988753
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-10 Score=126.23 Aligned_cols=137 Identities=12% Similarity=0.081 Sum_probs=81.5
Q ss_pred cEEEEEecCCCChhHHHhhhhhHHHHh----hcCc----cccc--cccc--------------cchH--HHHHHhcCchh
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILA----QVGA----DVPA--EIFE--------------ISPV--DRIFVRMGAKD 1081 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLr~i~~i~ila----q~G~----~vPa--~~~~--------------l~~~--d~i~~~ig~~d 1081 (1288)
.+.+|+||||+||||+|.+|....-.. ..|. ++.. ..+. .... +.+...+...+
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFLTSNK 101 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHhcccc
Confidence 478999999999999999987432100 0010 0000 0000 0001 11212222223
Q ss_pred hHhhcccchHHHHHH-HHHHHHh----CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc--cCcEEEEEcCCchhhh
Q 000778 1082 HIMAGQSTFLTELSE-TALMLSS----ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHK--VQCRGLFSTHYHRLAV 1154 (1288)
Q Consensus 1082 ~i~~~~Stf~~e~~~-~~~il~~----a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~--~~~~vl~~TH~~~l~~ 1154 (1288)
.......+++..+++ ++.+..+ +.+|+++|||||++|.|......+.. ++..+... .++++|++||+++.+.
T Consensus 102 ~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~-~l~~~~~~~~~~~~iii~th~~~~i~ 180 (198)
T cd03276 102 AAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTD-LLVKEAKKQPGRQFIFITPQDISGLA 180 (198)
T ss_pred ccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHH-HHHHHHhcCCCcEEEEEECCcccccc
Confidence 333445666655554 4444444 58999999999999999887665554 44444333 2468999999999887
Q ss_pred hhcCCCceEEeeeE
Q 000778 1155 DYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1155 ~~~~~~~v~~~~~~ 1168 (1288)
.+ + +|.++.++
T Consensus 181 ~~-d--~v~~~~~~ 191 (198)
T cd03276 181 SS-D--DVKVFRMK 191 (198)
T ss_pred cc-c--ceeEEEec
Confidence 65 4 78787775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PF05190 MutS_IV: MutS family domain IV C-terminus | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.5e-10 Score=107.19 Aligned_cols=92 Identities=41% Similarity=0.554 Sum_probs=86.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCceeeeeccccccCCCCCcEEEEeeecCcEEEeChHHH
Q 000778 837 GVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIK 916 (1288)
Q Consensus 837 g~d~~ld~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~~~~~~~~~y~i~v~~~~~~~~p~~~~~~ss~~~~~ry~tp~l~ 916 (1288)
|+|++||.+++.+.+++++|++++++.++.++.++++|..+++.+|+|+||.....++|.+|+..+++++..||+||++.
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~~~lk~~~~~~~gy~i~v~~~~~~~~p~~~~~~~~~k~~~rf~t~~l~ 80 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLEEIRKKLGIPSLKLVYIPKRGYLIEVPKSDEKKLPKDFIIVSSTKSGVRFTTPELK 80 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TTBEEEEETTTEEEEEEETCCGGGSTTTEEEEEEESSEEEEECHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEcCceEEEEEEEccccccCCCceEEEEEEcCcEEEECHHHH
Confidence 78999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 000778 917 KLLGELSQAESE 928 (1288)
Q Consensus 917 ~l~~~l~~~~~~ 928 (1288)
+|+.++.+++++
T Consensus 81 ~L~~~~~~~~ee 92 (92)
T PF05190_consen 81 ELNEELKEAEEE 92 (92)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999988753
|
; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A .... |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-10 Score=157.96 Aligned_cols=156 Identities=17% Similarity=0.173 Sum_probs=107.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-------------------HhhcCcccccccccc--chHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------LAQVGADVPAEIFEI--SPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-------------------laq~G~~vPa~~~~l--~~~d 1071 (1288)
..+++|++|.+ .+|+.++|+|++|||||||+++|+++.- +.+.-++||++..-+ ++.+
T Consensus 1232 ~~vL~~is~~I-~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~ 1310 (1490)
T TIGR01271 1232 RAVLQDLSFSV-EGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRK 1310 (1490)
T ss_pred cceeeccEEEE-cCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHH
Confidence 57999999999 7999999999999999999999998641 112224566654211 1111
Q ss_pred --------------HHHHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1072 --------------RIFVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1072 --------------~i~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
..+.+.++.+.+.. +-..|+ +|.++++.+++++.++++||||||+++.|+..-.
T Consensus 1311 NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~ 1390 (1490)
T TIGR01271 1311 NLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQ 1390 (1490)
T ss_pred HhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHH
Confidence 12333444433322 123465 5677788888899999999999996666665433
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.| ..+|.... .+||+|++||.++.+.. +| +|.++..|.++..|+
T Consensus 1391 ~I-~~~L~~~~--~~~TvI~IaHRl~ti~~-~D--rIlvL~~G~ivE~g~ 1434 (1490)
T TIGR01271 1391 II-RKTLKQSF--SNCTVILSEHRVEALLE-CQ--QFLVIEGSSVKQYDS 1434 (1490)
T ss_pred HH-HHHHHHHc--CCCEEEEEecCHHHHHh-CC--EEEEEECCEEEEeCC
Confidence 33 33444332 37999999999987765 45 899999998887653
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-10 Score=127.63 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=51.0
Q ss_pred hhcccchHHHHHH-------HHHHHHhCCCCcEEEEeCCCCCCChHHHH-HHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1084 MAGQSTFLTELSE-------TALMLSSATRNSLVVLDELGRGTSTSDGQ-AIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1084 ~~~~Stf~~e~~~-------~~~il~~a~~~sLvLLDEpg~GTs~~Dg~-aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
......++.++++ ++.+..++.+|+++|||||++|.|+.... .+ ..++..+.+..+.++|++||++++..
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l-~~~l~~~~~~~~~~iiiitH~~~~~~- 187 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESL-AEIIEERKSQKNFQLIVITHDEELVD- 187 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHH-HHHHHHHHhccCCEEEEEEecHHHHh-
Confidence 3344566644444 34555668999999999998888887655 44 45666665544779999999998875
Q ss_pred hcC
Q 000778 1156 YKK 1158 (1288)
Q Consensus 1156 ~~~ 1158 (1288)
.++
T Consensus 188 ~~d 190 (204)
T cd03240 188 AAD 190 (204)
T ss_pred hCC
Confidence 355
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-10 Score=158.95 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=108.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccccc--chH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFEI--SPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~l--~~~ 1070 (1288)
..|++|++|.+ .+|+.++|+|++|||||||+++|.++.- +.+.-++||++..-+ ++.
T Consensus 1249 ~~vL~~isl~I-~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr 1327 (1495)
T PLN03232 1249 PPVLHGLSFFV-SPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVR 1327 (1495)
T ss_pred CcccccceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHH
Confidence 47999999999 8999999999999999999999998531 122335677764211 111
Q ss_pred H--------------HHHHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1071 D--------------RIFVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1071 d--------------~i~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
+ +.+...++.+.+.. +-+.++ +|.++++.+++++.+|++|||||++++.|+..-
T Consensus 1328 ~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te 1407 (1495)
T PLN03232 1328 FNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTD 1407 (1495)
T ss_pred HHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 1 12233344333322 223466 577778888889999999999999666665533
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.. ....++... .+||+|+++|.++.+.. +| +|.+++.|++++.|+
T Consensus 1408 ~~-Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~D--rIlVL~~G~ivE~Gt 1452 (1495)
T PLN03232 1408 SL-IQRTIREEF--KSCTMLVIAHRLNTIID-CD--KILVLSSGQVLEYDS 1452 (1495)
T ss_pred HH-HHHHHHHHc--CCCEEEEEeCCHHHHHh-CC--EEEEEECCEEEEECC
Confidence 32 233343332 37999999999988766 55 899999999998774
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=127.49 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=49.2
Q ss_pred cchHHHHH-HHHHHHHhC----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCce
Q 000778 1088 STFLTELS-ETALMLSSA----TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRV 1162 (1288)
Q Consensus 1088 Stf~~e~~-~~~~il~~a----~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v 1162 (1288)
..++..++ +++.+.+++ .+|+++|||||++|.|+.....+ +.++..+. + +.++|++||+.++. ..++ +|
T Consensus 126 ~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l-~~~l~~~~-~-~~~~iivs~~~~~~-~~~d--~v 199 (212)
T cd03274 126 SNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIV-ANYIKERT-K-NAQFIVISLRNNMF-ELAD--RL 199 (212)
T ss_pred hhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHH-HHHHHHHc-C-CCEEEEEECcHHHH-HhCC--EE
Confidence 44554444 444444443 46899999999999998866544 46666663 2 57899999997654 5666 66
Q ss_pred EEeee
Q 000778 1163 SLCHM 1167 (1288)
Q Consensus 1163 ~~~~~ 1167 (1288)
..++.
T Consensus 200 ~~~~~ 204 (212)
T cd03274 200 VGIYK 204 (212)
T ss_pred EEEEe
Confidence 65544
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.3e-11 Score=120.52 Aligned_cols=100 Identities=22% Similarity=0.302 Sum_probs=68.6
Q ss_pred ccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCccccccc---cccc----
Q 000778 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEI---FEIS---- 1068 (1288)
Q Consensus 1016 ~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~---~~l~---- 1068 (1288)
+++++|.+ .+|++++|+||||+||||||++|++... ..+.-.++|+.. ..+.
T Consensus 1 L~~v~~~i-~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEI-KPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEE-ETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEE-cCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 36788888 7899999999999999999999998542 122223444442 1111
Q ss_pred ----hHHHHHHhcCchhhHhhcc----cchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1069 ----PVDRIFVRMGAKDHIMAGQ----STFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1069 ----~~d~i~~~ig~~d~i~~~~----Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
.+..++..++..+...... ..++ +|.++++.+.+++.+|+|+|||||+
T Consensus 80 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 80 ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 1233455555544333333 6676 5666788888889999999999994
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-10 Score=157.86 Aligned_cols=157 Identities=11% Similarity=0.127 Sum_probs=111.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh--------cCcccccccc--ccchHHHH---------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ--------VGADVPAEIF--EISPVDRI--------- 1073 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq--------~G~~vPa~~~--~l~~~d~i--------- 1073 (1288)
.++++|++|.+ .+|+.++|+||+||||||||++|+|..-... .-+|||++.- .-++.+.|
T Consensus 630 ~~vL~~inl~i-~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e 708 (1622)
T PLN03130 630 RPTLSNINLDV-PVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPE 708 (1622)
T ss_pred CceeeceeEEe-cCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHH
Confidence 57899999999 8999999999999999999999998653322 1246666531 11222222
Q ss_pred -----HHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 000778 1074 -----FVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFV 1136 (1288)
Q Consensus 1074 -----~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~ 1136 (1288)
....+..+.+.. +-.+++ ++.++++.++++..+++++|||||+++.|+.-+..+...++..+.
T Consensus 709 ~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l 788 (1622)
T PLN03130 709 RYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL 788 (1622)
T ss_pred HHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh
Confidence 222233333321 122345 677789999999999999999999777777766666555555443
Q ss_pred hccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1137 HKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1137 ~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.++|+|++||..+.... ++ +|++++.|.++..|+
T Consensus 789 --~~kTvIlVTH~l~~l~~-aD--~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 789 --RGKTRVLVTNQLHFLSQ-VD--RIILVHEGMIKEEGT 822 (1622)
T ss_pred --cCCEEEEEECCHhHHHh-CC--EEEEEeCCEEEEeCC
Confidence 37899999999987654 45 899999999887775
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=158.30 Aligned_cols=157 Identities=11% Similarity=0.100 Sum_probs=110.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh--------cCcccccccc--ccchHHHH---------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ--------VGADVPAEIF--EISPVDRI--------- 1073 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq--------~G~~vPa~~~--~l~~~d~i--------- 1073 (1288)
.++++|++|.+ .+|+.++|+||+||||||||+.|+|..-... .-.|||++.. .-++.|.|
T Consensus 630 ~~vL~~inl~i-~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e 708 (1495)
T PLN03232 630 KPTLSDINLEI-PVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESE 708 (1495)
T ss_pred CceeeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHH
Confidence 57899999999 8999999999999999999999998543211 1246666531 11222222
Q ss_pred -----HHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 000778 1074 -----FVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFV 1136 (1288)
Q Consensus 1074 -----~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~ 1136 (1288)
....+..+.+.. +-..++ ++.++++.++++..+|+++|||||+++.|+..+..+...++..+.
T Consensus 709 ~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l 788 (1495)
T PLN03232 709 RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL 788 (1495)
T ss_pred HHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh
Confidence 222233333321 112344 677789999999999999999999777777666666555555442
Q ss_pred hccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1137 HKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1137 ~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+.|+|++||.++.... +| +|.++..|.++..|+
T Consensus 789 --~~kT~IlvTH~~~~l~~-aD--~Ii~L~~G~i~~~Gt 822 (1495)
T PLN03232 789 --KGKTRVLVTNQLHFLPL-MD--RIILVSEGMIKEEGT 822 (1495)
T ss_pred --cCCEEEEEECChhhHHh-CC--EEEEEeCCEEEEecC
Confidence 36899999999987654 55 899999999887774
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-10 Score=155.89 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=103.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh--------------------------------------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA-------------------------------------- 1054 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila-------------------------------------- 1054 (1288)
..|++|++|.+ .+|+.++|+||+||||||++++|.++.-..
T Consensus 1181 ~~vL~~lsl~i-~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 (1466)
T PTZ00265 1181 VPIYKDLTFSC-DSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS 1259 (1466)
T ss_pred CccccCeeEEE-cCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccc
Confidence 47899999999 899999999999999999999999854320
Q ss_pred ---------------hc---------------------Ccccccccc--ccchHHHH---------------HHhcCchh
Q 000778 1055 ---------------QV---------------------GADVPAEIF--EISPVDRI---------------FVRMGAKD 1081 (1288)
Q Consensus 1055 ---------------q~---------------------G~~vPa~~~--~l~~~d~i---------------~~~ig~~d 1081 (1288)
+. -++||++.. .-++.+.| ....++.+
T Consensus 1260 ~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~ 1339 (1466)
T PTZ00265 1260 LTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDE 1339 (1466)
T ss_pred cccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHH
Confidence 11 134555431 11222222 11122223
Q ss_pred hHhh---c--------ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCC
Q 000778 1082 HIMA---G--------QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHY 1149 (1288)
Q Consensus 1082 ~i~~---~--------~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~ 1149 (1288)
.+.. | -..++ ++.++++.+++++.+|++||||||++..|+.....+ ...|..+....+.|+|++||.
T Consensus 1340 fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I-~~~L~~~~~~~~~TvIiIaHR 1418 (1466)
T PTZ00265 1340 FIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLI-EKTIVDIKDKADKTIITIAHR 1418 (1466)
T ss_pred HHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH-HHHHHHHhccCCCEEEEEech
Confidence 2221 1 12344 677889999999999999999999555555433333 233444421237899999999
Q ss_pred chhhhhhcCCCceEEeee----EEEE-ecCC
Q 000778 1150 HRLAVDYKKDPRVSLCHM----ACQV-GNGV 1175 (1288)
Q Consensus 1150 ~~l~~~~~~~~~v~~~~~----~~~~-~~g~ 1175 (1288)
+..... +| +|+++.. |.++ +.|+
T Consensus 1419 lsti~~-aD--~Ivvl~~~~~~G~iv~e~Gt 1446 (1466)
T PTZ00265 1419 IASIKR-SD--KIVVFNNPDRTGSFVQAHGT 1446 (1466)
T ss_pred HHHHHh-CC--EEEEEeCCCCCCCEEEEecC
Confidence 987765 55 8888887 7644 5553
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.9e-10 Score=115.86 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=94.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH-------HHhhcCcccc---cc--------ccccch-----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------ILAQVGADVP---AE--------IFEISP----- 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~-------ilaq~G~~vP---a~--------~~~l~~----- 1069 (1288)
-.|.++++|++ ..|+++++-||+|+||||+||++-+.. +.-|.|..+- ++ ...+++
T Consensus 24 LpV~~~vslsV-~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL 102 (235)
T COG4778 24 LPVLRNVSLSV-NAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL 102 (235)
T ss_pred eeeeeceeEEe-cCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence 36889999999 789999999999999999999987522 1111221110 00 001111
Q ss_pred -----------------------------HHHHHHhcCchhhHh-hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1070 -----------------------------VDRIFVRMGAKDHIM-AGQSTFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1070 -----------------------------~d~i~~~ig~~d~i~-~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
...+++|+...+.+- -..+||+ +|.+++..+...+.+-.++|||||++.
T Consensus 103 RviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTas 182 (235)
T COG4778 103 RVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTAS 182 (235)
T ss_pred HhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCccc
Confidence 123556666555443 2468999 466666666778999999999999555
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
.|....... ..++..- +..|+.++=+-||.+.-...++
T Consensus 183 LDa~Nr~vV-veli~e~-Ka~GaAlvGIFHDeevre~vad 220 (235)
T COG4778 183 LDATNRAVV-VELIREA-KARGAALVGIFHDEEVREAVAD 220 (235)
T ss_pred ccccchHHH-HHHHHHH-HhcCceEEEeeccHHHHHHHhh
Confidence 444434332 3444443 3358888889999998777777
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-10 Score=156.35 Aligned_cols=156 Identities=16% Similarity=0.121 Sum_probs=107.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccccc--chH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFEI--SPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~l--~~~ 1070 (1288)
..|++|++|++ .+|+.++|+|++|||||||+++|.++.- +.+.-++||++..-+ ++.
T Consensus 1299 ~~vL~~is~~I-~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr 1377 (1522)
T TIGR00957 1299 DLVLRHINVTI-HGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLR 1377 (1522)
T ss_pred cccccceeEEE-cCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHH
Confidence 46999999999 7899999999999999999999998541 222335677764211 111
Q ss_pred HH--------------HHHhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1071 DR--------------IFVRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1071 d~--------------i~~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
+. .+...++.+.+. .+-+.|+ +|.++++.+++++.+|++||||||+++.|+..-
T Consensus 1378 ~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te 1457 (1522)
T TIGR00957 1378 MNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457 (1522)
T ss_pred HHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 11 122233333322 1224465 577788888889999999999999666666533
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
. .....++... .+||+|+++|.++.+.. +| +|.+++.|++++.|+
T Consensus 1458 ~-~Iq~~l~~~~--~~~TvI~IAHRl~ti~~-~D--rIlVld~G~IvE~G~ 1502 (1522)
T TIGR00957 1458 N-LIQSTIRTQF--EDCTVLTIAHRLNTIMD-YT--RVIVLDKGEVAEFGA 1502 (1522)
T ss_pred H-HHHHHHHHHc--CCCEEEEEecCHHHHHh-CC--EEEEEECCEEEEECC
Confidence 3 3334444332 37999999999988765 34 899999999998774
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-10 Score=131.37 Aligned_cols=157 Identities=21% Similarity=0.265 Sum_probs=107.7
Q ss_pred CCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH---------------------HHhhcCcccccccccc--
Q 000778 1011 KGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIFEI-- 1067 (1288)
Q Consensus 1011 ~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~---------------------ilaq~G~~vPa~~~~l-- 1067 (1288)
.++.++.||+|++ .+|..++|+||+|+||||+||.+-..- +-.++| .||++..-+
T Consensus 549 p~k~vl~disF~v-~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG-VVPQDtvLFNd 626 (790)
T KOG0056|consen 549 PGKPVLSDISFTV-QPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG-VVPQDTVLFND 626 (790)
T ss_pred CCCceeecceEEe-cCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC-cccCcceeecc
Confidence 4689999999999 899999999999999999999987521 223455 678765211
Q ss_pred chHHHH-HHhcC--------------chhhHh------------hcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1068 SPVDRI-FVRMG--------------AKDHIM------------AGQSTFLTELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1068 ~~~d~i-~~~ig--------------~~d~i~------------~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
.+++.| |.+.+ ..|.|. +|+..-.+|.++++.+......|++++|||.++..|
T Consensus 627 TI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALD 706 (790)
T KOG0056|consen 627 TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALD 706 (790)
T ss_pred eeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcC
Confidence 111111 11111 122222 122222378889999999999999999999955555
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+..-.+|- +.|+.++. +.|.|++.|-+.-+..+ | .|.++..|++++.|.
T Consensus 707 T~tER~IQ-aaL~rlca--~RTtIVvAHRLSTivnA-D--~ILvi~~G~IvErG~ 755 (790)
T KOG0056|consen 707 TNTERAIQ-AALARLCA--NRTTIVVAHRLSTIVNA-D--LILVISNGRIVERGR 755 (790)
T ss_pred CccHHHHH-HHHHHHhc--CCceEEEeeeehheecc-c--EEEEEeCCeEeecCc
Confidence 54445443 56777764 56889999988765442 3 788999999998774
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.7e-10 Score=154.21 Aligned_cols=156 Identities=12% Similarity=0.145 Sum_probs=107.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccccc--chH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFEI--SPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~l--~~~ 1070 (1288)
..|++|++|.+ .+|+.++|+|++|||||||+++|.++.- +.+.-++||++..-+ ++.
T Consensus 1323 ~~vL~~vsf~I-~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIr 1401 (1560)
T PTZ00243 1323 PLVLRGVSFRI-APREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR 1401 (1560)
T ss_pred CceeecceEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHH
Confidence 46899999999 7899999999999999999999997541 233345777764211 122
Q ss_pred HH--------------HHHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCC-CcEEEEeCCCCCCChHH
Q 000778 1071 DR--------------IFVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATR-NSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~--------------i~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~-~sLvLLDEpg~GTs~~D 1123 (1288)
+. .+...++.+.+.. +-+.++ ++.++++.+.+++.+ +++||||||+++.|+.-
T Consensus 1402 eNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~t 1481 (1560)
T PTZ00243 1402 QNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPAL 1481 (1560)
T ss_pred HHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHH
Confidence 21 2223344433321 224566 566677888888885 89999999966666553
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
-..| ..++.... .++|+|+++|.++.+.. +| +|.+++.|.+++.|+
T Consensus 1482 e~~I-q~~L~~~~--~~~TvI~IAHRl~ti~~-~D--rIlVLd~G~VvE~Gt 1527 (1560)
T PTZ00243 1482 DRQI-QATVMSAF--SAYTVITIAHRLHTVAQ-YD--KIIVMDHGAVAEMGS 1527 (1560)
T ss_pred HHHH-HHHHHHHC--CCCEEEEEeccHHHHHh-CC--EEEEEECCEEEEECC
Confidence 3333 34444432 37999999999987765 45 899999999988774
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.9e-10 Score=130.07 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=99.3
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHHhh------cCccccccc-----ccc---------------chHHHHHHhcC
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ------VGADVPAEI-----FEI---------------SPVDRIFVRMG 1078 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq------~G~~vPa~~-----~~l---------------~~~d~i~~~ig 1078 (1288)
..|++++|+||||-|||||.|+++|..-.-. .-+|-|+-- ..+ .+...|+..+.
T Consensus 365 ~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~ 444 (591)
T COG1245 365 YDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLN 444 (591)
T ss_pred ecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccc
Confidence 3579999999999999999999998553211 113333311 110 12234555667
Q ss_pred chhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhc
Q 000778 1079 AKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYK 1157 (1288)
Q Consensus 1079 ~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~ 1157 (1288)
..+-+.+....++ +|+++++.+++++.+.+|.|||||.+-+|.......+ .+++++....+.+.+++-||+-+..+++
T Consensus 445 l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~va-kvIRR~~e~~~kta~vVdHDi~~~dyvs 523 (591)
T COG1245 445 LEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVA-KVIRRFIENNEKTALVVDHDIYMIDYVS 523 (591)
T ss_pred hHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHH-HHHHHHHhhcCceEEEEecceehhhhhh
Confidence 7777777777777 7999999999999999999999995444444455444 5667777777899999999999998888
Q ss_pred CCCceEE
Q 000778 1158 KDPRVSL 1164 (1288)
Q Consensus 1158 ~~~~v~~ 1164 (1288)
+ ++.+
T Consensus 524 D--r~iv 528 (591)
T COG1245 524 D--RLIV 528 (591)
T ss_pred c--eEEE
Confidence 7 5443
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.6e-10 Score=126.35 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=51.9
Q ss_pred cchHH-HHHHHHHHHHhCC----CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCce
Q 000778 1088 STFLT-ELSETALMLSSAT----RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRV 1162 (1288)
Q Consensus 1088 Stf~~-e~~~~~~il~~a~----~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v 1162 (1288)
..++. +.++++.+..++. +|+++|||||++|.|+.....+. .++..+.+. |.++|++||+.++.. .++ ++
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~-~~i~~~~~~-g~~vi~isH~~~~~~-~~d--~i 228 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVA-SYIREQAGP-NFQFIVISLKEEFFS-KAD--AL 228 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHH-HHHHHhccC-CcEEEEEECCHHHHh-hCC--eE
Confidence 34443 4444555554443 58999999999999988766554 566666544 789999999988764 466 66
Q ss_pred EEeeeE
Q 000778 1163 SLCHMA 1168 (1288)
Q Consensus 1163 ~~~~~~ 1168 (1288)
..++..
T Consensus 229 ~~~~~~ 234 (247)
T cd03275 229 VGVYRD 234 (247)
T ss_pred EEEEec
Confidence 655543
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-10 Score=95.89 Aligned_cols=48 Identities=33% Similarity=0.686 Sum_probs=38.4
Q ss_pred ccccceEEeecCCCcEEeEEEEeeeCCCCcEEEEccCCchhhhccCcceE
Q 000778 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKI 154 (1288)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~l~~e~~ 154 (1288)
-.|.+|++|||+++.||+|.|++||..++.|.|.|+||++ ++|...+|
T Consensus 7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGte--l~lke~di 54 (55)
T PF09465_consen 7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTE--LELKENDI 54 (55)
T ss_dssp -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-E--EEEECCCE
T ss_pred cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCE--EEeccccc
Confidence 4799999999999999999999999999999999999998 45554444
|
It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.6e-10 Score=113.17 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=103.4
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh-----------hcCc---------cc---cccc--cc--c
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA-----------QVGA---------DV---PAEI--FE--I 1067 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila-----------q~G~---------~v---Pa~~--~~--l 1067 (1288)
....|+|+. +.|..++|+|.||||||||.|+|+|++-.. +.|- .+ |..+ .+ +
T Consensus 28 AV~~vSFtL-~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 28 AVKPVSFTL-REGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred cccceEEEe-cCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 456678888 778999999999999999999999976210 0110 01 1110 00 1
Q ss_pred c-hHH----------------HHH---HhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1068 S-PVD----------------RIF---VRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1068 ~-~~d----------------~i~---~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
+ +.| +|| ..+|.. |...-....++ ++.++++.+.+++.+|+++|.||.-.+.|..-..
T Consensus 107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrs 186 (267)
T COG4167 107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRS 186 (267)
T ss_pred hhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHH
Confidence 1 011 111 112211 11111111122 5667889999999999999999996655555444
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+. .+.-+|.++.|...|.+|.++.....+++ .|.+||.|.+++.|+
T Consensus 187 Ql~-NL~LeLQek~GiSyiYV~QhlG~iKHi~D--~viVM~EG~vvE~G~ 233 (267)
T COG4167 187 QLI-NLMLELQEKQGISYIYVTQHIGMIKHISD--QVLVMHEGEVVERGS 233 (267)
T ss_pred HHH-HHHHHHHHHhCceEEEEechhhHhhhhcc--cEEEEecCceeecCC
Confidence 443 34445777789999999999999999998 999999999998774
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.1e-10 Score=136.09 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=104.9
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--------------------HHhhcCccccccc--cccch
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEI--FEISP 1069 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--------------------ilaq~G~~vPa~~--~~l~~ 1069 (1288)
+..|++|++|++ .+|++++|+||||+||||+...|-.+. .+.+.-.+|-++. ..-++
T Consensus 480 ~~~Vlk~lsfti-~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI 558 (716)
T KOG0058|consen 480 DVPVLKNLSFTI-RPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSI 558 (716)
T ss_pred CchhhcCceeee-CCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccH
Confidence 457999999999 899999999999999999999887532 2222223443332 11122
Q ss_pred HHHHHHh---------------cCchhhHhh---c--------ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1070 VDRIFVR---------------MGAKDHIMA---G--------QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1070 ~d~i~~~---------------ig~~d~i~~---~--------~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
.++|.-. -++.+.|.. + -+.++ ++.+++|.+.++..+|.+|||||- ||.+
T Consensus 559 ~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEA---TSAL 635 (716)
T KOG0058|consen 559 RENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEA---TSAL 635 (716)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEech---hhhc
Confidence 3333111 111222211 1 12334 566789999999999999999999 8888
Q ss_pred HHHH--HHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1123 DGQA--IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1123 Dg~a--ia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|+.+ +....|..+.+ +.|||++.|-+..++... .|++++.|++++.|+
T Consensus 636 DaeSE~lVq~aL~~~~~--~rTVlvIAHRLSTV~~Ad---~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 636 DAESEYLVQEALDRLMQ--GRTVLVIAHRLSTVRHAD---QIVVIDKGRVVEMGT 685 (716)
T ss_pred chhhHHHHHHHHHHhhc--CCeEEEEehhhhHhhhcc---EEEEEcCCeEEeccc
Confidence 8543 33344544443 579999999999887643 799999999998874
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-10 Score=133.58 Aligned_cols=219 Identities=17% Similarity=0.148 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEEecCCCCccccccC
Q 000778 930 ESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSL 1009 (1288)
Q Consensus 930 ~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~rHP~l~~~~l 1009 (1288)
+...+.+++.++.+|+=....-..+...|+.|+-+-++-..-......+..|+- .+-..||++....+
T Consensus 301 q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~------------~e~~~~p~l~i~~V 368 (582)
T KOG0062|consen 301 QMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLIGFLFPTE------------GEVLSPPNLRISYV 368 (582)
T ss_pred HHHHHHHHHHHHHHhccCcccchhHHHHHHHhccCCCCCccceecccceecCCC------------CCcCCCCeeEEEee
Confidence 344456777788777533333334555555554332221111100111122211 12235776654322
Q ss_pred C----CCc-ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccc----------------
Q 000778 1010 G----KGE-FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEIS---------------- 1068 (1288)
Q Consensus 1010 ~----~~~-~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~---------------- 1068 (1288)
. .+. .+...++++. +....++++|+||.||||++|.+.+-.- +..|...-...-++.
T Consensus 369 ~f~y~p~~y~~~~~~~~d~-e~~sRi~~vg~ng~gkst~lKi~~~~l~-~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~ 446 (582)
T KOG0062|consen 369 AFEYTPSEYQWRKQLGLDR-ESDSRISRVGENGDGKSTLLKILKGDLT-PTRGIVGRHPRLRIKYFAQHHVDFLDKNVNA 446 (582)
T ss_pred eccCCCcchhhhhccCCcc-chhhhhheeccCchhHHHHHHHHhccCC-cccceeeecccceecchhHhhhhHHHHHhHH
Confidence 2 122 3445566655 4456689999999999999999886110 001100000000000
Q ss_pred --------------hHHHHHHhcCchhhH-hhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 000778 1069 --------------PVDRIFVRMGAKDHI-MAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVL 1132 (1288)
Q Consensus 1069 --------------~~d~i~~~ig~~d~i-~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ail 1132 (1288)
-+.+-+.++|+.-.+ .....++++ +..+++.+.....+|.||+|||| |+++|..++- |+.
T Consensus 447 vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEP---TNhLD~dsl~-AL~ 522 (582)
T KOG0062|consen 447 VDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEP---TNHLDRDSLG-ALA 522 (582)
T ss_pred HHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCC---CccccHHHHH-HHH
Confidence 122335566765444 334566774 44577777778899999999999 9999988764 666
Q ss_pred HHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEE
Q 000778 1133 EHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMAC 1169 (1288)
Q Consensus 1133 e~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~ 1169 (1288)
+.| +.++..||+|||+.+++..+|. .+.++..|.
T Consensus 523 ~Al-~~F~GGVv~VSHd~~fi~~~c~--E~Wvve~g~ 556 (582)
T KOG0062|consen 523 KAL-KNFNGGVVLVSHDEEFISSLCK--ELWVVEDGK 556 (582)
T ss_pred HHH-HhcCCcEEEEECcHHHHhhcCc--eeEEEcCCc
Confidence 666 4567889999999999998887 665555553
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.1e-10 Score=124.31 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=50.0
Q ss_pred cccchHHHH-HHHHHHHHhC----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCC
Q 000778 1086 GQSTFLTEL-SETALMLSSA----TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDP 1160 (1288)
Q Consensus 1086 ~~Stf~~e~-~~~~~il~~a----~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~ 1160 (1288)
...++++++ ++++.+.+++ .+|+++|||||++|.|+.....+. ..+..+.+ +.++|++||..++ ..+++
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~-~~l~~~~~--~~~ii~~~h~~~~-~~~~d-- 228 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVA-NMIKELSD--GAQFITTTFRPEL-LEVAD-- 228 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhC--CCEEEEEecCHHH-HhhCC--
Confidence 345566544 4455555553 468999999999999988655543 45555533 6788888888765 45676
Q ss_pred ceEEeee
Q 000778 1161 RVSLCHM 1167 (1288)
Q Consensus 1161 ~v~~~~~ 1167 (1288)
++..+..
T Consensus 229 ~i~~l~~ 235 (243)
T cd03272 229 KFYGVKF 235 (243)
T ss_pred EEEEEEE
Confidence 5555443
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.3e-10 Score=122.33 Aligned_cols=81 Identities=16% Similarity=0.136 Sum_probs=54.5
Q ss_pred ccchHHHHHHHHHHHH-----hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccC-cEEEEEcCCchhhhhhcCCC
Q 000778 1087 QSTFLTELSETALMLS-----SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQ-CRGLFSTHYHRLAVDYKKDP 1160 (1288)
Q Consensus 1087 ~Stf~~e~~~~~~il~-----~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~-~~vl~~TH~~~l~~~~~~~~ 1160 (1288)
..++++.+++.+.+.. .+.+|.++|+|||++|+|+.....+. .++..+.++.+ .++|++||++......++.-
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~-~~l~~~~~~~g~~~viiith~~~~~~~~~~~~ 202 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVF-DMLVETACKEGTSQYFLITPKLLPGLNYHEKM 202 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHH-HHHHHHhhcCCCceEEEEchhhccCCcccCce
Confidence 3456666666544332 36899999999999999998766654 55555554424 57999999987666666544
Q ss_pred ceEEeeeE
Q 000778 1161 RVSLCHMA 1168 (1288)
Q Consensus 1161 ~v~~~~~~ 1168 (1288)
+|.+++.|
T Consensus 203 ~v~~l~~g 210 (213)
T cd03277 203 TVLCVYNG 210 (213)
T ss_pred EEEEEecC
Confidence 55555544
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=116.06 Aligned_cols=123 Identities=18% Similarity=0.239 Sum_probs=70.5
Q ss_pred EEEEEecCCCChhHHHhhhhhHHHHh-------------hcCccccccccccchH-HH-HHHhcCchhhHhhcccchHHH
Q 000778 1029 FILLTGPNMGGKSTLLRQVCLAVILA-------------QVGADVPAEIFEISPV-DR-IFVRMGAKDHIMAGQSTFLTE 1093 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLr~i~~i~ila-------------q~G~~vPa~~~~l~~~-d~-i~~~ig~~d~i~~~~Stf~~e 1093 (1288)
+.+|+||||+|||++|..|+...... ..+...++..+.+.+. +. ++.-. -.++ ..-+|. ++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~-~~~~-~~~LS~--Ge 99 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVL-QGKV-EQILSG--GE 99 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEec-CCcC-cccCCH--HH
Confidence 89999999999999999998532110 0000011111111110 00 00000 0011 111222 34
Q ss_pred HHHHHHHHHh----CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1094 LSETALMLSS----ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1094 ~~~~~~il~~----a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
.++++.+..+ ..+|+++|+|||++|.|+.....+. .++..+.+. ++++|++||++++.. .++
T Consensus 100 ~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~-~~L~~~~~~-g~tiIiiSH~~~~~~-~ad 165 (178)
T cd03239 100 KSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVS-DMIKEMAKH-TSQFIVITLKKEMFE-NAD 165 (178)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEECCHHHHh-hCC
Confidence 4444444333 3789999999999999988766555 456666554 789999999998775 344
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=120.53 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=48.4
Q ss_pred ccchHHHHH-HHHHHHHhC----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCc
Q 000778 1087 QSTFLTELS-ETALMLSSA----TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPR 1161 (1288)
Q Consensus 1087 ~Stf~~e~~-~~~~il~~a----~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~ 1161 (1288)
...+++.++ +++.+..++ .+|.++|||||++|+|+.....+. .++..+. + |.++|++||..++... ++ +
T Consensus 164 ~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~-~~l~~~~-~-g~~ii~iSH~~~~~~~-~d--~ 237 (251)
T cd03273 164 LTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIG-RMIKTHF-K-GSQFIVVSLKEGMFNN-AN--V 237 (251)
T ss_pred ccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHc-C-CCEEEEEECCHHHHHh-CC--E
Confidence 445554444 344444333 678999999998888888766544 4555553 3 6789999999776664 55 5
Q ss_pred eEEee
Q 000778 1162 VSLCH 1166 (1288)
Q Consensus 1162 v~~~~ 1166 (1288)
|+...
T Consensus 238 v~~~~ 242 (251)
T cd03273 238 LFRTR 242 (251)
T ss_pred EEEEE
Confidence 54433
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.6e-09 Score=121.89 Aligned_cols=153 Identities=20% Similarity=0.251 Sum_probs=101.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh-------hcC----------ccccccc----cccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA-------QVG----------ADVPAEI----FEISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila-------q~G----------~~vPa~~----~~l~~~d 1071 (1288)
.++..|++|.+ .+|++++|+|++|+||||+||+|+|...-- ..| ..+|.+. ....+.+
T Consensus 396 ryvlr~vNL~i-kpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 396 RYVLRNLNLEI-KPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeeceeeEe-cCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHH
Confidence 57899999998 789999999999999999999999855311 011 1223221 1223444
Q ss_pred HH-------------HHhcCchhhHhhc--ccchHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 000778 1072 RI-------------FVRMGAKDHIMAG--QSTFLTELSETAL-MLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHF 1135 (1288)
Q Consensus 1072 ~i-------------~~~ig~~d~i~~~--~Stf~~e~~~~~~-il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l 1135 (1288)
++ +.+.|+.|.+..- .+.++.+.++-+. +..++..|++++.||.++-.|+..+..+|..+- .|
T Consensus 475 hl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkis-el 553 (593)
T COG2401 475 HLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKIS-EL 553 (593)
T ss_pred HHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHH-HH
Confidence 44 4444544444321 2233333333333 333468999999999988888888887776554 46
Q ss_pred HhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1136 VHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1136 ~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
+++.|.|++++||..++...+.-+ .+.+.+.|
T Consensus 554 aRe~giTlivvThrpEv~~AL~PD-~li~vgYg 585 (593)
T COG2401 554 AREAGITLIVVTHRPEVGNALRPD-TLILVGYG 585 (593)
T ss_pred HHHhCCeEEEEecCHHHHhccCCc-eeEEeecc
Confidence 677899999999999998877431 44444444
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-09 Score=137.97 Aligned_cols=87 Identities=17% Similarity=0.132 Sum_probs=63.5
Q ss_pred HhhcccchHH-HHHHHHHHHHhCC---CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1083 IMAGQSTFLT-ELSETALMLSSAT---RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1083 i~~~~Stf~~-e~~~~~~il~~a~---~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
+.+...++++ |.+++..+..++. +|.|+|||||++|+++.+...+. .++..+.+. |.++|++||+++++. .++
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~-~~L~~l~~~-G~TVIvi~H~~~~i~-~aD 898 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL-EVLQRLVDQ-GNTVVVIEHNLDVIK-TAD 898 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEeCCHHHHH-hCC
Confidence 4455667774 4455666666654 58999999999999999877665 566667654 889999999999875 466
Q ss_pred CCceEEe------eeEEEEecC
Q 000778 1159 DPRVSLC------HMACQVGNG 1174 (1288)
Q Consensus 1159 ~~~v~~~------~~~~~~~~g 1174 (1288)
+|+.+ +.|.++..|
T Consensus 899 --~ii~Lgp~~G~~gG~iv~~G 918 (924)
T TIGR00630 899 --YIIDLGPEGGDGGGTIVASG 918 (924)
T ss_pred --EEEEecCCccCCCCEEEEeC
Confidence 77777 456666554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-09 Score=123.60 Aligned_cols=138 Identities=22% Similarity=0.194 Sum_probs=79.3
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHH-hcCch----------
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV-RMGAK---------- 1080 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~-~ig~~---------- 1080 (1288)
.++....++|++ +-...++|+||||.||||||+.+.|-.- .+.|-.--....++++||+-.. .+..+
T Consensus 599 qkpLFkkldFGi-DmdSRiaIVGPNGVGKSTlLkLL~Gkl~-P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~ 676 (807)
T KOG0066|consen 599 QKPLFKKLDFGI-DMDSRIAIVGPNGVGKSTLLKLLIGKLD-PNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRK 676 (807)
T ss_pred CCchhhcccccc-cccceeEEECCCCccHHHHHHHHhcCCC-CCcchhhccceeeeechhhhhHHhhccccCHHHHHHHh
Confidence 356667777877 4556799999999999999999886321 1112111111233444443211 11111
Q ss_pred -----hhHhhcccch--------------HH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccC
Q 000778 1081 -----DHIMAGQSTF--------------LT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQ 1140 (1288)
Q Consensus 1081 -----d~i~~~~Stf--------------~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~ 1140 (1288)
+.....+.+| ++ +..+++.+--.+..|++|||||| |+.+|..+|- ++-+.+. .+.
T Consensus 677 FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP---TNNLDIESID-ALaEAIn-ey~ 751 (807)
T KOG0066|consen 677 FNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP---TNNLDIESID-ALAEAIN-EYN 751 (807)
T ss_pred cCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC---CCCcchhhHH-HHHHHHH-hcc
Confidence 1111112222 22 33344444345689999999999 6666655543 4444443 346
Q ss_pred cEEEEEcCCchhhhhh
Q 000778 1141 CRGLFSTHYHRLAVDY 1156 (1288)
Q Consensus 1141 ~~vl~~TH~~~l~~~~ 1156 (1288)
..||+||||-.++...
T Consensus 752 GgVi~VsHDeRLi~eT 767 (807)
T KOG0066|consen 752 GGVIMVSHDERLIVET 767 (807)
T ss_pred CcEEEEecccceeeec
Confidence 7899999998776543
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.7e-09 Score=137.18 Aligned_cols=87 Identities=20% Similarity=0.148 Sum_probs=63.7
Q ss_pred HhhcccchHH-HHHHHHHHHHhCCCC---cEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1083 IMAGQSTFLT-ELSETALMLSSATRN---SLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1083 i~~~~Stf~~-e~~~~~~il~~a~~~---sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
+.+...++++ |.+++..+..++.+| .|+|||||++|.++.+...+. .++..+.+. |.++|++||+++++. .++
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~~-G~TVIiitH~~~~i~-~aD 900 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVDK-GNTVVVIEHNLDVIK-TAD 900 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCHHHHH-hCC
Confidence 3444566774 556667777777777 999999999999999877665 566667654 889999999999875 466
Q ss_pred CCceEEe------eeEEEEecC
Q 000778 1159 DPRVSLC------HMACQVGNG 1174 (1288)
Q Consensus 1159 ~~~v~~~------~~~~~~~~g 1174 (1288)
+|+.+ +.|.++..|
T Consensus 901 --~ii~Lgp~~G~~~G~Iv~~G 920 (943)
T PRK00349 901 --WIIDLGPEGGDGGGEIVATG 920 (943)
T ss_pred --EEEEecCCcCCCCCEEEEeC
Confidence 77776 345555443
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-09 Score=143.17 Aligned_cols=93 Identities=19% Similarity=0.168 Sum_probs=65.9
Q ss_pred cCchhh-HhhcccchHH-HHHHHHHHHHhC---CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCch
Q 000778 1077 MGAKDH-IMAGQSTFLT-ELSETALMLSSA---TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHR 1151 (1288)
Q Consensus 1077 ig~~d~-i~~~~Stf~~-e~~~~~~il~~a---~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~ 1151 (1288)
+|..+. +.+...++++ |.++++.+..++ .+|+|+|||||++|.++.+...+. .++..+.+. |.++|++||+++
T Consensus 796 vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll-~lL~~L~~~-G~TVIiIsHdl~ 873 (1809)
T PRK00635 796 LGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALI-YVLQSLTHQ-GHTVVIIEHNMH 873 (1809)
T ss_pred cCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhc-CCEEEEEeCCHH
Confidence 444332 3445566664 445555555554 699999999999999999877655 567777654 889999999999
Q ss_pred hhhhhcCCCceEEee------eEEEEecC
Q 000778 1152 LAVDYKKDPRVSLCH------MACQVGNG 1174 (1288)
Q Consensus 1152 l~~~~~~~~~v~~~~------~~~~~~~g 1174 (1288)
++ ..++ ++..+. .|.++..|
T Consensus 874 ~i-~~aD--rVi~L~p~gg~~~G~iv~~G 899 (1809)
T PRK00635 874 VV-KVAD--YVLELGPEGGNLGGYLLASC 899 (1809)
T ss_pred HH-HhCC--EEEEEccCCCCCCCEEEEeC
Confidence 88 6677 777774 45665554
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-08 Score=124.05 Aligned_cols=142 Identities=18% Similarity=0.128 Sum_probs=91.7
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------Hhhc-Cccccccc----c-------------
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------LAQV-GADVPAEI----F------------- 1065 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------laq~-G~~vPa~~----~------------- 1065 (1288)
+....++++|.+ .+|+.+.|+||||+|||||+|+|+|+-- .++. -.|+|+.. .
T Consensus 405 ~~~ll~~l~~~v-~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~ 483 (604)
T COG4178 405 GQTLLSELNFEV-RPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAP 483 (604)
T ss_pred CCeeeccceeee-CCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCC
Confidence 457888999998 7899999999999999999999999642 2111 13444431 0
Q ss_pred ccc--hHHHHHHhcCchhhHhh------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 000778 1066 EIS--PVDRIFVRMGAKDHIMA------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFV 1136 (1288)
Q Consensus 1066 ~l~--~~d~i~~~ig~~d~i~~------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~ 1136 (1288)
.++ .+-+++..+|..+-+.. ....++ +|.++++.+.-+.++|++++|||- |+.+|...-. .+.+.+.
T Consensus 484 ~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEA---TsALDe~~e~-~l~q~l~ 559 (604)
T COG4178 484 DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA---TSALDEETED-RLYQLLK 559 (604)
T ss_pred CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecc---hhccChHHHH-HHHHHHH
Confidence 000 11234444454433222 112222 788999999989999999999999 5555533211 2333332
Q ss_pred hc-cCcEEEEEcCCchhhhhhcC
Q 000778 1137 HK-VQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1137 ~~-~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
++ .++++|.|.|-..+-.....
T Consensus 560 ~~lp~~tvISV~Hr~tl~~~h~~ 582 (604)
T COG4178 560 EELPDATVISVGHRPTLWNFHSR 582 (604)
T ss_pred hhCCCCEEEEeccchhhHHHHhh
Confidence 22 58999999999887665443
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-08 Score=115.00 Aligned_cols=169 Identities=17% Similarity=0.122 Sum_probs=111.9
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC------ccccccc-
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG------ADVPAEI- 1064 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G------~~vPa~~- 1064 (1288)
..|++++.|-...+. .|-.+.|++++ .+|+++-|+|.|||||||+++.+.|+.- .|.| -+|-++.
T Consensus 321 ~~lelrnvrfay~~~------~FhvgPiNl~i-krGelvFliG~NGsGKST~~~LLtGL~~-PqsG~I~ldg~pV~~e~l 392 (546)
T COG4615 321 KTLELRNVRFAYQDN------AFHVGPINLTI-KRGELVFLIGGNGSGKSTLAMLLTGLYQ-PQSGEILLDGKPVSAEQL 392 (546)
T ss_pred cceeeeeeeeccCcc------cceecceeeEE-ecCcEEEEECCCCCcHHHHHHHHhcccC-CCCCceeECCccCCCCCH
Confidence 458888888766543 37788888888 7899999999999999999999998553 2333 2332222
Q ss_pred -cccchHHHHHHhcCc------------hhhHhhcc-------------cchH------HHHHHHHHHHHhCCCCcEEEE
Q 000778 1065 -FEISPVDRIFVRMGA------------KDHIMAGQ-------------STFL------TELSETALMLSSATRNSLVVL 1112 (1288)
Q Consensus 1065 -~~l~~~d~i~~~ig~------------~d~i~~~~-------------Stf~------~e~~~~~~il~~a~~~sLvLL 1112 (1288)
-.-..|..||++.-. .+.+...+ ..|+ ++.++++.+++++.+++++++
T Consensus 393 edYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~ 472 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVL 472 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEe
Confidence 112334444443321 12222211 1121 678899999999999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1113 DELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1113 DEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
||-.+--||.=..-.-..+|-.+ ++.|.||+.+|||-.-... +| ++..+..|.+++
T Consensus 473 DEWAADQDPaFRR~FY~~lLp~L-K~qGKTI~aIsHDd~YF~~-AD--rll~~~~G~~~e 528 (546)
T COG4615 473 DEWAADQDPAFRREFYQVLLPLL-KEQGKTIFAISHDDHYFIH-AD--RLLEMRNGQLSE 528 (546)
T ss_pred ehhhccCChHHHHHHHHHHhHHH-HHhCCeEEEEecCchhhhh-HH--HHHHHhcCceee
Confidence 99988888876554444555555 5569999999998654322 22 555566665553
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.5e-09 Score=108.59 Aligned_cols=171 Identities=13% Similarity=0.134 Sum_probs=111.5
Q ss_pred CCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH----------------------------
Q 000778 1000 GHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------------- 1051 (1288)
Q Consensus 1000 rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~---------------------------- 1051 (1288)
||-.++.+.-.+.--+...++++. ..|++-+++|.+|||||-..|.|+++.
T Consensus 7 rnL~IE~~TsqG~vK~VD~v~ltl-nEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk 85 (330)
T COG4170 7 RNLTIEFKTSQGWVKAVDRVSMTL-NEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRK 85 (330)
T ss_pred cceEEEEecCCCceEeeeeeeeee-ccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhh
Confidence 455555443223345677899998 789999999999999999999999843
Q ss_pred HHhhcC---------ccccccccc-------------------cch----HHHHHHhcCchhhHhhcccch----HHHHH
Q 000778 1052 ILAQVG---------ADVPAEIFE-------------------ISP----VDRIFVRMGAKDHIMAGQSTF----LTELS 1095 (1288)
Q Consensus 1052 ilaq~G---------~~vPa~~~~-------------------l~~----~d~i~~~ig~~d~i~~~~Stf----~~e~~ 1095 (1288)
+.++-- |.-|.+... +++ .-.++-++|..|.-.--.|.- .+|-+
T Consensus 86 ~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~Q 165 (330)
T COG4170 86 LVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQ 165 (330)
T ss_pred hhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcce
Confidence 111111 111211100 000 012455666554332211111 14555
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1096 ~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.+..+++.|..|.|+|.|||+....+..... ...+|..+.+..+.++|+++||+......++ ++.+++.|..++.+
T Consensus 166 KVMIA~A~AnqPrLLIADEPTN~~e~~Tq~Q-ifRLLs~mNQn~~TtILL~s~Dl~~is~W~d--~i~VlYCGQ~~ESa 241 (330)
T COG4170 166 KVMIAIALANQPRLLIADEPTNSMEPTTQAQ-IFRLLSRLNQNSNTTILLISHDLQMISQWAD--KINVLYCGQTVESA 241 (330)
T ss_pred eeeeehhhccCCceEeccCCCcccCccHHHH-HHHHHHHhhccCCceEEEEcccHHHHHHHhh--heEEEEeccccccc
Confidence 6667777899999999999955555554433 3467777777778899999999999999999 88888888776654
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-08 Score=118.18 Aligned_cols=133 Identities=19% Similarity=0.156 Sum_probs=100.6
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------------------------hhcCcccccc-
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------------------------AQVGADVPAE- 1063 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------------------------aq~G~~vPa~- 1063 (1288)
.+|.+++|+||||-||||.+|.++|.... .|.--++|..
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~ 177 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVV 177 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHh
Confidence 57899999999999999999999984321 0100111211
Q ss_pred ----------ccccchHHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH---HHHHHH
Q 000778 1064 ----------IFEISPVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD---GQAIAE 1129 (1288)
Q Consensus 1064 ----------~~~l~~~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D---g~aia~ 1129 (1288)
....+.+|.+..+++...-+.+..+.++ +|+++++.+..++.+.++.++||| |+.+| ....|
T Consensus 178 KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEp---sSyLDi~qRl~~a- 253 (591)
T COG1245 178 KGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEP---SSYLDIRQRLNAA- 253 (591)
T ss_pred cchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCC---cccccHHHHHHHH-
Confidence 0123567778888888888888888888 799999999999999999999999 77777 33333
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCce
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRV 1162 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v 1162 (1288)
.++..|++. +.+||++.||+.....+++.-+|
T Consensus 254 r~Irel~~~-~k~ViVVEHDLavLD~lsD~vhI 285 (591)
T COG1245 254 RVIRELAED-GKYVIVVEHDLAVLDYLSDFVHI 285 (591)
T ss_pred HHHHHHhcc-CCeEEEEechHHHHHHhhheeEE
Confidence 566777765 78999999999999988884333
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-08 Score=105.68 Aligned_cols=167 Identities=20% Similarity=0.177 Sum_probs=102.3
Q ss_pred eEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC-----------
Q 000778 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG----------- 1057 (1288)
Q Consensus 993 ~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G----------- 1057 (1288)
.|++.+++--+-. ..++.-|+++.. +.|...+++|.||+|||||||.++|-.+. -|.+
T Consensus 13 aievsgl~f~y~~------~dP~~~Dfnldl-p~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~ 85 (291)
T KOG2355|consen 13 AIEVSGLQFKYKV------SDPIFFDFNLDL-PAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE 85 (291)
T ss_pred eEEEeccEEeccc------CCceEEEEeecc-CCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc
Confidence 4666666543322 237788999998 77889999999999999999999983211 0000
Q ss_pred -----cccccc-------cc------ccchHHHHHHhcCc----hhhHhh----c----ccchH-HHHHHHHHHHHhCCC
Q 000778 1058 -----ADVPAE-------IF------EISPVDRIFVRMGA----KDHIMA----G----QSTFL-TELSETALMLSSATR 1106 (1288)
Q Consensus 1058 -----~~vPa~-------~~------~l~~~d~i~~~ig~----~d~i~~----~----~Stf~-~e~~~~~~il~~a~~ 1106 (1288)
+|+-.+ .. .++...-||.--|. .+.+.. . +...+ ++.+++...+.+..+
T Consensus 86 ~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~P 165 (291)
T KOG2355|consen 86 SSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKP 165 (291)
T ss_pred ccCceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccc
Confidence 111100 01 11211222221111 011110 0 11112 566667777778899
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHH---hccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1107 NSLVVLDELGRGTSTSDGQAIAESVLEHFV---HKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1107 ~sLvLLDEpg~GTs~~Dg~aia~aile~l~---~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
-.++||||. |--+|..|.+ .+|+.|. +..||||+.+||-.+=...... +++.+..|.++.
T Consensus 166 fkVLLLDEV---TVDLDVlARa-dLLeFlkeEce~RgatIVYATHIFDGLe~Wpt--hl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 166 FKVLLLDEV---TVDLDVLARA-DLLEFLKEECEQRGATIVYATHIFDGLETWPT--HLVYIKSGKLVD 228 (291)
T ss_pred eeEEEeeee---EeehHHHHHH-HHHHHHHHHHhhcCcEEEEEeeeccchhhcch--hEEEecCCeeee
Confidence 999999999 7777766554 4566654 3469999999998886666666 677777776654
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-08 Score=128.89 Aligned_cols=155 Identities=19% Similarity=0.203 Sum_probs=105.9
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH---------------------HHhhcCccccccc--cccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEI--FEIS 1068 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~---------------------ilaq~G~~vPa~~--~~l~ 1068 (1288)
+..|.+|++|++ ..|+.++|+||+||||||.+-+|-... +-.|+| .|.++. ...+
T Consensus 1002 ~~~Il~~l~l~i-~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~-lVsQEP~LF~~T 1079 (1228)
T KOG0055|consen 1002 DVPVLNNLSLSI-RAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG-LVSQEPVLFNGT 1079 (1228)
T ss_pred CchhhcCCcEEe-cCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc-eeccCchhhccc
Confidence 468999999999 889999999999999999998876421 223333 344443 1122
Q ss_pred hHHHHHHh-c--------------CchhhH---hhcc--------cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1069 PVDRIFVR-M--------------GAKDHI---MAGQ--------STFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1069 ~~d~i~~~-i--------------g~~d~i---~~~~--------Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
+.+.|.-- - ++.+.+ -+|. ..++ ++.+|+|.++++..+|++|||||- ||.
T Consensus 1080 IrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEA---TSA 1156 (1228)
T KOG0055|consen 1080 IRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEA---TSA 1156 (1228)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeecc---chh
Confidence 33333211 0 011111 1111 1233 567789999999999999999999 777
Q ss_pred HHHH--HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1122 SDGQ--AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1122 ~Dg~--aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
+|.. .+....|+.+. .|.|+|+++|-+..... +| .|.+++.|.+++.|+.
T Consensus 1157 LDseSErvVQeALd~a~--~gRT~IvIAHRLSTIqn-aD--~I~Vi~~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1157 LDSESERVVQEALDRAM--EGRTTIVIAHRLSTIQN-AD--VIAVLKNGKVVEQGTH 1208 (1228)
T ss_pred hhhhhHHHHHHHHHHhh--cCCcEEEEecchhhhhc-CC--EEEEEECCEEEecccH
Confidence 7743 34445566653 37899999999987765 34 7999999999999863
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-07 Score=125.86 Aligned_cols=178 Identities=17% Similarity=0.131 Sum_probs=120.2
Q ss_pred CCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----hhcC--ccccc
Q 000778 990 EEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----AQVG--ADVPA 1062 (1288)
Q Consensus 990 ~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----aq~G--~~vPa 1062 (1288)
..+.+.++++.-..-. ......++||+|.+ .+|..++|+||-|||||+||.+|.|-.-+ .-.| +|||+
T Consensus 515 ~~~~i~i~~~sfsW~~----~~~~~tL~dIn~~i-~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q 589 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDS----ESPEPTLKDINFEI-KKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQ 589 (1381)
T ss_pred CCceEEEeeeeEecCC----CCCcccccceeEEe-cCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEecc
Confidence 3456777777543321 12345899999999 89999999999999999999999873321 1112 56776
Q ss_pred cc--cccchHHHH--------------HHhcCc---------hhhHhhc--ccchH-HHHHHHHHHHHhCCCCcEEEEeC
Q 000778 1063 EI--FEISPVDRI--------------FVRMGA---------KDHIMAG--QSTFL-TELSETALMLSSATRNSLVVLDE 1114 (1288)
Q Consensus 1063 ~~--~~l~~~d~i--------------~~~ig~---------~d~i~~~--~Stf~-~e~~~~~~il~~a~~~sLvLLDE 1114 (1288)
.. ..-++-|+| ...-.. .|.-.-| --+++ ++.+|++.+++.-.+.++.|||-
T Consensus 590 ~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDD 669 (1381)
T KOG0054|consen 590 QPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDD 669 (1381)
T ss_pred ccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcC
Confidence 53 111222222 211122 2211111 23344 56678888888889999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCCC
Q 000778 1115 LGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGG 1177 (1288)
Q Consensus 1115 pg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~ 1177 (1288)
|.+..|..-|..|...++..+.+ +.|+|++||.+++... ++ .|.+++.|.+...|+++
T Consensus 670 plSAVDahvg~~if~~ci~~~L~--~KT~ILVTHql~~L~~-ad--~Iivl~~G~I~~~Gty~ 727 (1381)
T KOG0054|consen 670 PLSAVDAHVGKHIFEECIRGLLR--GKTVILVTHQLQFLPH-AD--QIIVLKDGKIVESGTYE 727 (1381)
T ss_pred cchhhhHhhhHHHHHHHHHhhhc--CCEEEEEeCchhhhhh-CC--EEEEecCCeEecccCHH
Confidence 97777766688887777765543 5799999998776655 33 79999999999988653
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.7e-08 Score=116.71 Aligned_cols=154 Identities=17% Similarity=0.134 Sum_probs=108.8
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH---------------------HhhcCccccccccc------c
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---------------------LAQVGADVPAEIFE------I 1067 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i---------------------laq~G~~vPa~~~~------l 1067 (1288)
...|++|++ .+|++++|.|-=|+|+|-++++|.|+-- +.+--.|||.+... .
T Consensus 274 ~~~dvSf~v-r~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 274 KVRDVSFTV-RAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred ceeCceeEE-eCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 356888998 7899999999999999999999998321 12222466655422 1
Q ss_pred chHHHH----HH----------------------hcCch-hhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1068 SPVDRI----FV----------------------RMGAK-DHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1068 ~~~d~i----~~----------------------~ig~~-d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
++.+++ +. +++.. -+.....+++|+ ..+.+.....++++|++|||||||||.
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI 432 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGI 432 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence 111111 10 11100 111123455554 444556666678999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1120 s~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
|.-.-.. .+.++..|+.+ |..||++|-+++.+..+|| +|.+|+.|.++..
T Consensus 433 DVGAK~e-Iy~li~~lA~~-G~ail~iSSElpEll~~~D--RIlVm~~Gri~~e 482 (500)
T COG1129 433 DVGAKAE-IYRLIRELAAE-GKAILMISSELPELLGLSD--RILVMREGRIVGE 482 (500)
T ss_pred ccchHHH-HHHHHHHHHHC-CCEEEEEeCChHHHHhhCC--EEEEEECCEEEEE
Confidence 9885554 46889999876 8999999999999999999 9999999998863
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-07 Score=111.83 Aligned_cols=138 Identities=20% Similarity=0.158 Sum_probs=89.5
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------hhcCccccccc-cccc-hHHH--------
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------AQVGADVPAEI-FEIS-PVDR-------- 1072 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------aq~G~~vPa~~-~~l~-~~d~-------- 1072 (1288)
++++.+.++|.+ .+|..++||||||||||+|+|.++|+--. .+.-.|+|+.. ...+ +.|+
T Consensus 494 ~~vvv~~Ltf~i-~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e 572 (728)
T KOG0064|consen 494 GDVLVPKLTFQI-EPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSE 572 (728)
T ss_pred cceeecceeEEe-cCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHH
Confidence 467888899998 78999999999999999999999996522 22234556542 1111 1121
Q ss_pred --------------HHHhcCchhhHhhcccch----------H-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1073 --------------IFVRMGAKDHIMAGQSTF----------L-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1073 --------------i~~~ig~~d~i~~~~Stf----------~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
|+..+.. +.+.+..+.| + +|.++++.+...-++|...+|||-++..+..-
T Consensus 573 ~~~~kg~~d~dL~~iL~~v~L-~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidv---- 647 (728)
T KOG0064|consen 573 QMKRKGYTDQDLEAILDIVHL-EHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDV---- 647 (728)
T ss_pred HHHhcCCCHHHHHHHHHHhhH-HHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccch----
Confidence 1111111 1222222222 2 67778888888889999999999955555431
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhh
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDY 1156 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~ 1156 (1288)
-..+.+ .++..|.+.|-+||-..+-...
T Consensus 648 E~~i~~-~ak~~gi~llsithrpslwk~h 675 (728)
T KOG0064|consen 648 EGKIFQ-AAKDAGISLLSITHRPSLWKYH 675 (728)
T ss_pred HHHHHH-HHHhcCceEEEeecCccHHHHH
Confidence 123444 3456799999999999887653
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.7e-07 Score=108.94 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=100.8
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------h----hcCcc
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------A----QVGAD 1059 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------a----q~G~~ 1059 (1288)
+.|++.+. |+.... .+..+..+++|.+ ..|..++||||||+|||+|||.+|++--. + .--.|
T Consensus 432 n~i~~e~v--~l~tPt---~g~~lie~Ls~~V-~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lff 505 (659)
T KOG0060|consen 432 NAIEFEEV--SLSTPT---NGDLLIENLSLEV-PSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFF 505 (659)
T ss_pred ceEEeeee--eecCCC---CCceeeeeeeeEe-cCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEE
Confidence 45666532 343331 2567888899999 78999999999999999999999986531 1 11245
Q ss_pred ccccc-cccc-hH-------------------------------HHHHHhcCchh--hHhhcccchH-HHHHHHHHHHHh
Q 000778 1060 VPAEI-FEIS-PV-------------------------------DRIFVRMGAKD--HIMAGQSTFL-TELSETALMLSS 1103 (1288)
Q Consensus 1060 vPa~~-~~l~-~~-------------------------------d~i~~~ig~~d--~i~~~~Stf~-~e~~~~~~il~~ 1103 (1288)
||+.. ..++ +- ..|..|.|--| ....+..+++ +|+++++.+.-.
T Consensus 506 lPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf 585 (659)
T KOG0060|consen 506 LPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF 585 (659)
T ss_pred ecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence 66643 1111 00 11233333322 3333445555 899999999988
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1104 ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1104 a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
.++|.+.||||- |+..+-. .-.++-+.+ ++.|.|.|-|.|-..+...
T Consensus 586 y~kPk~AiLDE~---TSAv~~d-vE~~~Yr~~-r~~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 586 YHKPKFAILDEC---TSAVTED-VEGALYRKC-REMGITFISVGHRKSLWKF 632 (659)
T ss_pred hcCCceEEeech---hhhccHH-HHHHHHHHH-HHcCCeEEEeccHHHHHhh
Confidence 999999999999 6666422 222444444 4459999999999888765
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6e-09 Score=118.81 Aligned_cols=58 Identities=17% Similarity=0.074 Sum_probs=47.4
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1096 ~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
+++.+.++...|.||.|||| |+++|--++.| +-.|| .....|.|+|+||..+....|.
T Consensus 420 RvSLARALflEPTLLMLDEP---TNHLDLNAVIW-LdNYL-QgWkKTLLIVSHDQgFLD~VCt 477 (807)
T KOG0066|consen 420 RVSLARALFLEPTLLMLDEP---TNHLDLNAVIW-LDNYL-QGWKKTLLIVSHDQGFLDSVCT 477 (807)
T ss_pred ehhHHHHHhcCceeeeecCC---ccccccceeee-hhhHH-hhhhheeEEEecccchHHHHHH
Confidence 45677778899999999999 99999877776 33444 5567899999999999888876
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-08 Score=128.36 Aligned_cols=160 Identities=19% Similarity=0.148 Sum_probs=95.9
Q ss_pred CCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCccccccc---ccc-
Q 000778 1011 KGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEI---FEI- 1067 (1288)
Q Consensus 1011 ~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~---~~l- 1067 (1288)
+...+++||+=-. .+|-+.+|+|++||||||||+.|++-..+ +..-.||-+.. +.+
T Consensus 802 ~~~qLL~~V~G~~-kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAF-KPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred cceEhhhcCceEe-cCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 3467888888666 67899999999999999999999974311 11112222211 111
Q ss_pred -----------------------chHHHHHHhcCch---hhHhhc-ccchHHHHH-HHHHHHHhCCCC-cEEEEeCCCCC
Q 000778 1068 -----------------------SPVDRIFVRMGAK---DHIMAG-QSTFLTELS-ETALMLSSATRN-SLVVLDELGRG 1118 (1288)
Q Consensus 1068 -----------------------~~~d~i~~~ig~~---d~i~~~-~Stf~~e~~-~~~~il~~a~~~-sLvLLDEpg~G 1118 (1288)
.+++.+..-++.. |.+-.. -+.++.|.+ ++.....++.+| +||+||||++|
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 1233333333332 111110 022344443 333444577888 99999999777
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhh-hhcCCCceEEe-eeEEEEecCC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAV-DYKKDPRVSLC-HMACQVGNGV 1175 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~-~~~~~~~v~~~-~~~~~~~~g~ 1175 (1288)
.|...+. +...+++.|++ .|.+||.+-|.+.... +..| ++.++ ..|..+..|+
T Consensus 961 LDsqaA~-~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD--~LLLLkrGGqtVY~G~ 1015 (1391)
T KOG0065|consen 961 LDSQAAA-IVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFD--ELLLLKRGGQTVYFGP 1015 (1391)
T ss_pred ccHHHHH-HHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHh--HHHHHhcCCeEEEecC
Confidence 7777444 44577888877 4899999999987432 2233 55444 3455555554
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.3e-07 Score=105.90 Aligned_cols=152 Identities=23% Similarity=0.220 Sum_probs=101.2
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--------H------------HhhcCccccccccccchHH
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------I------------LAQVGADVPAEIFEISPVD 1071 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--------i------------laq~G~~vPa~~~~l~~~d 1071 (1288)
..+++++++|++ ..|..++|+||.|+||||++|.+-... + +-..-..||++..-+ -|
T Consensus 275 ~r~iL~~isf~i-~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLF--ND 351 (497)
T COG5265 275 RRPILNGISFTI-PLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLF--ND 351 (497)
T ss_pred cchhhcCccccc-cCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceeh--hh
Confidence 468999999999 889999999999999999999987532 1 111223466654211 12
Q ss_pred HHHHhc-----Cc--------------hhhHhhc---------ccch---HHHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1072 RIFVRM-----GA--------------KDHIMAG---------QSTF---LTELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1072 ~i~~~i-----g~--------------~d~i~~~---------~Stf---~~e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
.++-.+ .+ .+.+... .-.| .+|.++++.+.....+|+++++||. ||
T Consensus 352 ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~dea---ts 428 (497)
T COG5265 352 TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEA---TS 428 (497)
T ss_pred hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehh---hh
Confidence 222111 00 0111111 1111 2688999999999999999999999 66
Q ss_pred hHH---HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1121 TSD---GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1121 ~~D---g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+| -.+|. +-|..+. .|.|.|++-|-+.-+... + .|.++..|.+++.|.
T Consensus 429 aldt~te~~iq-~~l~~~~--~~rttlviahrlsti~~a-d--eiivl~~g~i~erg~ 480 (497)
T COG5265 429 ALDTHTEQAIQ-AALREVS--AGRTTLVIAHRLSTIIDA-D--EIIVLDNGRIVERGT 480 (497)
T ss_pred HhhhhHHHHHH-HHHHHHh--CCCeEEEEeehhhhccCC-c--eEEEeeCCEEEecCc
Confidence 666 33332 4444443 377999999998766543 2 799999999998874
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5e-07 Score=94.20 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=44.8
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1098 ALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1098 ~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
+.+.+..+..-+.|||||-+|.|+.-..+++ ++|..|++. |.-+|++||-+-+.
T Consensus 138 ~i~~~rf~~~GiYiLDEPEa~LSp~RQlell-a~l~~la~s-GaQ~IiATHSPiLl 191 (233)
T COG3910 138 AIFHNRFNGQGIYILDEPEAALSPSRQLELL-AILRDLADS-GAQIIIATHSPILL 191 (233)
T ss_pred HHHHHHhccCceEEecCccccCCHHHHHHHH-HHHHHHHhc-CCeEEEEecChhhe
Confidence 4455567899999999999999999887765 788988775 89999999987553
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.5e-07 Score=104.79 Aligned_cols=70 Identities=26% Similarity=0.297 Sum_probs=47.2
Q ss_pred HHHHHHHHHHh--CC--CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1093 ELSETALMLSS--AT--RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1093 e~~~~~~il~~--a~--~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
+.++++.++.. +. +|+++|||||++|.++.....+. .++..+.. ++++|++||++.+. .+++ ++..+..+
T Consensus 175 ~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~-~~l~~~~~--~~tii~isH~~~~~-~~~d--~~~~l~~~ 248 (276)
T cd03241 175 ELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVG-KKLKELSR--SHQVLCITHLPQVA-AMAD--NHFLVEKE 248 (276)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhC--CCEEEEEechHHHH-HhcC--cEEEEEEe
Confidence 34445544432 33 99999999999999888666554 34555533 68999999999865 4565 55555444
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.5e-07 Score=119.22 Aligned_cols=156 Identities=20% Similarity=0.282 Sum_probs=109.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------hhcC--------cccccccc-------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------AQVG--------ADVPAEIF------- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------aq~G--------~~vPa~~~------- 1065 (1288)
..|+++|+|.+ .+|+-++|+|..|||||||+.++-.++.. +++| +.+|++..
T Consensus 1153 p~VLk~is~~I-~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR 1231 (1381)
T KOG0054|consen 1153 PLVLKGISFTI-KPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVR 1231 (1381)
T ss_pred cchhcCceEEE-cCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccc
Confidence 68999999999 78999999999999999999998876531 2333 45677642
Q ss_pred -ccchHH-----HHH---HhcC-----------chhhHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1066 -EISPVD-----RIF---VRMG-----------AKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1066 -~l~~~d-----~i~---~~ig-----------~~d~i~~~~Stf~~e~~~-~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.+-+++ +|+ .+.. ....+..+-+.|+++.++ +..++++..+.++|+|||.|+..|+.--
T Consensus 1232 ~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD 1311 (1381)
T KOG0054|consen 1232 FNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 1311 (1381)
T ss_pred cccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHH
Confidence 222332 222 2222 233344455778866665 5666678899999999999777777643
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.-|-..|-+++ .+||||.+-|.+.-+.. +| +|.++..|.+++-++
T Consensus 1312 ~lIQ~tIR~~F---~dcTVltIAHRl~TVmd-~D--rVlVld~G~v~Efds 1356 (1381)
T KOG0054|consen 1312 ALIQKTIREEF---KDCTVLTIAHRLNTVMD-SD--RVLVLDAGRVVEFDS 1356 (1381)
T ss_pred HHHHHHHHHHh---cCCeEEEEeeccchhhh-cC--eEEEeeCCeEeecCC
Confidence 33333444444 27999999999987765 33 899999999998764
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.3e-07 Score=103.09 Aligned_cols=105 Identities=23% Similarity=0.339 Sum_probs=58.5
Q ss_pred cEEEEEecCCCChhHHHhhhhhHHHHhhcCcc-ccccccccchHH---H------------HHHhcCchhhHhhcccchH
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGAD-VPAEIFEISPVD---R------------IFVRMGAKDHIMAGQSTFL 1091 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~-vPa~~~~l~~~d---~------------i~~~ig~~d~i~~~~Stf~ 1091 (1288)
..++|.||||+|||||++.+++..-.. .|.. +... .+..+| . ++.++.+-++..+ .
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~--~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-----~ 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK--KVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK-----A 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE--EeecchhHHHHHHHhcccccccccccccccccchH-----H
Confidence 468999999999999999999755321 2211 1110 111111 1 1112222111111 1
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1092 TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1092 ~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
..| .++..+.+|+++|+|||++ .. ...++++.+ + .|.++|++||+..+.
T Consensus 184 ~~~----~~~i~~~~P~villDE~~~---~e----~~~~l~~~~-~-~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 184 EGM----MMLIRSMSPDVIVVDEIGR---EE----DVEALLEAL-H-AGVSIIATAHGRDVE 232 (270)
T ss_pred HHH----HHHHHhCCCCEEEEeCCCc---HH----HHHHHHHHH-h-CCCEEEEEechhHHH
Confidence 122 2222346999999999943 22 234566665 3 389999999987664
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.2e-06 Score=115.01 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=55.4
Q ss_pred ccchH-HHHHHHHHHHHhCC---CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1087 QSTFL-TELSETALMLSSAT---RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1087 ~Stf~-~e~~~~~~il~~a~---~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
..|++ +|.+++..+..+.. .+.|+|||||+.|..+.|...+. .+++.|... |.|+|++.|++++... +|
T Consensus 1697 ~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~-g~tvivieH~~~~i~~-aD 1769 (1809)
T PRK00635 1697 LSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSL-GHSVIYIDHDPALLKQ-AD 1769 (1809)
T ss_pred CCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhc-CCeEEEEeCCHHHHHh-CC
Confidence 45666 67787766665543 47999999999999999988776 678888765 8999999999999877 44
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.2e-06 Score=102.11 Aligned_cols=67 Identities=22% Similarity=0.232 Sum_probs=54.0
Q ss_pred ccchH-HHHHHHHHHHH---hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1087 QSTFL-TELSETALMLS---SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1087 ~Stf~-~e~~~~~~il~---~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
..|++ +|.+++..+.. .++...|.|||||+.|.-..|...+. .+|..|... |-|||++.|+++.+..
T Consensus 820 atTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl-~VL~rLvd~-GnTViVIEHNLdVIk~ 890 (935)
T COG0178 820 ATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLL-EVLHRLVDK-GNTVIVIEHNLDVIKT 890 (935)
T ss_pred cccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecccceEee
Confidence 44555 67777655544 46888999999999999999988765 788999875 8899999999997654
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.3e-05 Score=88.52 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=32.3
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhc
Q 000778 1103 SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYK 1157 (1288)
Q Consensus 1103 ~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~ 1157 (1288)
...+..++||||+.++.|..-...++ .+|..+.+ ++-+|++||...+...+.
T Consensus 155 ~~~~~p~~ilDEvd~~LD~~~~~~l~-~~l~~~~~--~~Q~ii~Th~~~~~~~a~ 206 (220)
T PF02463_consen 155 RYKPSPFLILDEVDAALDEQNRKRLA-DLLKELSK--QSQFIITTHNPEMFEDAD 206 (220)
T ss_dssp TCS--SEEEEESTTTTS-HHHHHHHH-HHHHHHTT--TSEEEEE-S-HHHHTT-S
T ss_pred cccccccccccccccccccccccccc-cccccccc--cccccccccccccccccc
Confidence 45788999999997777766554443 44555532 478999999988877654
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.8e-05 Score=86.71 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=61.0
Q ss_pred CCCcEEEEEecCCCChhHHH-hhhhhHHHHhhcCccccccccccchHHHHHHhcCc--hhhHhhc----cc---chH--H
Q 000778 1025 GNASFILLTGPNMGGKSTLL-RQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGA--KDHIMAG----QS---TFL--T 1092 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlL-r~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~--~d~i~~~----~S---tf~--~ 1092 (1288)
.+|++++|+||||+|||||. +.++++.-....+.|+..+...-.+.... ..+|. .+....+ .. .++ .
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH-HHhCCchHHHhhcCcEEEEEecccccChH
Confidence 46789999999999999995 55555433233334444332211112221 22332 1111110 00 011 1
Q ss_pred HH-HHHHHHHHh--CCCCcEEEEeCCCCCCChH-HHH--HHHHHHHHHHHhccCcEEEEEcCCchh
Q 000778 1093 EL-SETALMLSS--ATRNSLVVLDELGRGTSTS-DGQ--AIAESVLEHFVHKVQCRGLFSTHYHRL 1152 (1288)
Q Consensus 1093 e~-~~~~~il~~--a~~~sLvLLDEpg~GTs~~-Dg~--aia~aile~l~~~~~~~vl~~TH~~~l 1152 (1288)
+. ..+..++.. ..+|+++++|||+.+.... |.. .....++..+.+. ++++++ ||+...
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~-g~tvi~-t~~~~~ 164 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSL-NKVIIL-TANPKE 164 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhC-CCEEEE-Eecccc
Confidence 11 112223332 3579999999997665211 221 2234566666444 775555 555443
|
|
| >KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.9e-06 Score=94.41 Aligned_cols=61 Identities=21% Similarity=0.395 Sum_probs=51.4
Q ss_pred cccccccccccceEEeecCCCcEEeEEEEe-eeCCCCcEEEEccCCc----hhhhccC---cceEEEEe
Q 000778 98 AKSYGEDVLRKRIRVYWPLDKAWYEGCVKS-FDKECNKHLVQYDDGE----DELLDLG---KEKIEWVQ 158 (1288)
Q Consensus 98 ~~~~~~~~vg~rv~v~wp~d~~~y~g~v~~-~~~~~~~h~v~Yddgd----~e~l~l~---~e~~~~~~ 158 (1288)
.....+++||++|..-||+++.||++.|++ |....++|.+.||..+ ++|++|. +|+|+|..
T Consensus 153 ~n~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~I~p~DIrw~g 221 (273)
T KOG4675|consen 153 GNVPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLREISPEDIRWEG 221 (273)
T ss_pred ccCCchhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCccccccccCCHHhccccC
Confidence 344467799999999999999999999999 5566778999998777 7888877 88888884
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.2e-05 Score=85.58 Aligned_cols=47 Identities=11% Similarity=0.224 Sum_probs=32.0
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchh
Q 000778 1102 SSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRL 1152 (1288)
Q Consensus 1102 ~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l 1152 (1288)
..+.++.+|||||+| .+...+.. ...++..+.+ .+.++|+++|+...
T Consensus 92 ~~l~~~~~lllDE~~-~~e~~~~~--~~~~l~~~~~-~~~~~i~v~h~~~~ 138 (174)
T PRK13695 92 RALEEADVIIIDEIG-KMELKSPK--FVKAVEEVLD-SEKPVIATLHRRSV 138 (174)
T ss_pred hccCCCCEEEEECCC-cchhhhHH--HHHHHHHHHh-CCCeEEEEECchhh
Confidence 345799999999984 24455432 2355556654 48899999998643
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.4e-05 Score=89.50 Aligned_cols=60 Identities=7% Similarity=0.013 Sum_probs=36.9
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhc-CCCceEEeeeEE
Q 000778 1104 ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYK-KDPRVSLCHMAC 1169 (1288)
Q Consensus 1104 a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~-~~~~v~~~~~~~ 1169 (1288)
...|.++|||||++|.|+.... .+++.+.+ .+ .++++||+.+....++ +...+..++.|.
T Consensus 208 ~~~~~illlDEp~a~LD~~~~~----~l~~~l~~-~~-q~ii~~~~~~~~~~~~~~~~~i~~l~~g~ 268 (270)
T cd03242 208 SGEYPVLLLDDVLAELDLGRQA----ALLDAIEG-RV-QTFVTTTDLADFDALWLRRAQIFRVDAGT 268 (270)
T ss_pred hCCCcEEEEcCcchhcCHHHHH----HHHHHhhc-CC-CEEEEeCCchhccchhccCccEEEEeCcE
Confidence 4789999999997777776544 34555533 23 4666666666555544 323455555553
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.5e-05 Score=83.62 Aligned_cols=121 Identities=17% Similarity=0.069 Sum_probs=63.9
Q ss_pred EEEEecCCCChhHHHhhhhhHHHH-hhcCccccccccccchHHHHHHhcCchhh--Hhhc--------ccchHHHHH---
Q 000778 1030 ILLTGPNMGGKSTLLRQVCLAVIL-AQVGADVPAEIFEISPVDRIFVRMGAKDH--IMAG--------QSTFLTELS--- 1095 (1288)
Q Consensus 1030 ~~ItGpNgsGKSTlLr~i~~i~il-aq~G~~vPa~~~~l~~~d~i~~~ig~~d~--i~~~--------~Stf~~e~~--- 1095 (1288)
++|.||.|+|||||.-+++.-... ...+.|+-.+... .-+.+.+..+|..-. ...+ ...++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~-~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~ 80 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESP-EELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR 80 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCH-HHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence 689999999999999888753321 1222344332211 111122233332211 1111 111122111
Q ss_pred ----HHHHHHHhCCCCcEEEEeCCCCCCCh--HHHHHHHHHHHHHHHhccCcEEEEEcCCchh
Q 000778 1096 ----ETALMLSSATRNSLVVLDELGRGTST--SDGQAIAESVLEHFVHKVQCRGLFSTHYHRL 1152 (1288)
Q Consensus 1096 ----~~~~il~~a~~~sLvLLDEpg~GTs~--~Dg~aia~aile~l~~~~~~~vl~~TH~~~l 1152 (1288)
..........+|++|++|||+...+. .+.......++..+.+ .|+++|+++|....
T Consensus 81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~ 142 (187)
T cd01124 81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGL 142 (187)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccC
Confidence 11111113468999999999776652 1122233456666655 48999999998875
|
A related protein is found in archaea. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.5e-05 Score=92.11 Aligned_cols=134 Identities=19% Similarity=0.253 Sum_probs=86.8
Q ss_pred CcEEEEEecCCCChhHHHhhhhhHHHHhhcC--------ccccccc-----cccc---------------hHHHHHHhcC
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG--------ADVPAEI-----FEIS---------------PVDRIFVRMG 1078 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G--------~~vPa~~-----~~l~---------------~~d~i~~~ig 1078 (1288)
.++++.+|.||-|||||+|+++|..- ...| +|-|+.. ..+. ++..+..-+.
T Consensus 367 SeiivmlgEngtgkTTfi~mlag~~~-pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ 445 (592)
T KOG0063|consen 367 SEIIVMLGENGTGKTTFIRMLAGRLK-PDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQ 445 (592)
T ss_pred ceeEEEEccCCcchhHHHHHHhcCCC-CCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhh
Confidence 57899999999999999999998321 1112 2223221 1110 0111122233
Q ss_pred chhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhc
Q 000778 1079 AKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYK 1157 (1288)
Q Consensus 1079 ~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~ 1157 (1288)
.++-+.+...+++ +|+++++.++.+-.+.++.|+|||-+=.|...... |..++.++.-+.+.|.+++.||.-.+.+++
T Consensus 446 ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~-AskvikRfilhakktafvVEhdfImaTYla 524 (592)
T KOG0063|consen 446 IENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRII-ASKVIKRFILHAKKTAFVVEHDFIMATYLA 524 (592)
T ss_pred HHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHH-HHHHHHHHHHhccchhhhhhhHHHHHHhhc
Confidence 4444555555665 79999999999999999999999955555444443 334455444444778899999999888888
Q ss_pred CCCceEE
Q 000778 1158 KDPRVSL 1164 (1288)
Q Consensus 1158 ~~~~v~~ 1164 (1288)
+ +|++
T Consensus 525 d--rviv 529 (592)
T KOG0063|consen 525 D--RVIV 529 (592)
T ss_pred c--eeEE
Confidence 8 5443
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.4e-05 Score=81.05 Aligned_cols=123 Identities=24% Similarity=0.238 Sum_probs=63.6
Q ss_pred EEEEEecCCCChhHHHhhhhhHHHHhhcC--ccccccccccchHHHH--HHhcCchhhHhh--ccc-ch-HHHHHHHHHH
Q 000778 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVG--ADVPAEIFEISPVDRI--FVRMGAKDHIMA--GQS-TF-LTELSETALM 1100 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLr~i~~i~ilaq~G--~~vPa~~~~l~~~d~i--~~~ig~~d~i~~--~~S-tf-~~e~~~~~~i 1100 (1288)
+++|+||||+||||+++.++..... +-+ .|+..+.......... +...+..++... ... .. .....+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 3789999999999999999875432 222 2223322211111111 111111111100 000 11 1222334445
Q ss_pred HHhCCCCcEEEEeCCCCCCChH---------HHHHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1101 LSSATRNSLVVLDELGRGTSTS---------DGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1101 l~~a~~~sLvLLDEpg~GTs~~---------Dg~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
+....++.++|+||+..-.... ........+++.+ ++.++++|+++|.....
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA-RKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-hcCCceEEEEEecCCcc
Confidence 5567899999999995322111 1123333455444 44689999999987643
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.6e-05 Score=82.59 Aligned_cols=125 Identities=18% Similarity=0.165 Sum_probs=66.7
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHH-HhhcCccccccccccchHHHHHHhcC--chhhHhhccc-----------ch
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVI-LAQVGADVPAEIFEISPVDRIFVRMG--AKDHIMAGQS-----------TF 1090 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~i-laq~G~~vPa~~~~l~~~d~i~~~ig--~~d~i~~~~S-----------tf 1090 (1288)
..|.+++|+|++|+|||||..+++.-.+ -...+.|+-.+...-.+..+ +..+| ..+.+..+.. ..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 101 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGFEWN 101 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHH-HHHCCCChhHHHhCCCceEEeccccccccC
Confidence 5689999999999999999999864222 22334455444322222221 22233 2222211111 11
Q ss_pred HHHHHHHH-HHHHhC--CCCcEEEEeCCCCCCChHHHHHHHHHH---HHHHHhccCcEEEEEcCCchh
Q 000778 1091 LTELSETA-LMLSSA--TRNSLVVLDELGRGTSTSDGQAIAESV---LEHFVHKVQCRGLFSTHYHRL 1152 (1288)
Q Consensus 1091 ~~e~~~~~-~il~~a--~~~sLvLLDEpg~GTs~~Dg~aia~ai---le~l~~~~~~~vl~~TH~~~l 1152 (1288)
...+.++. .+...+ .++++|++|||+...+..+...+ ..+ +..+.+ .++++|+++|....
T Consensus 102 ~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~-~~~l~~l~~l~~-~g~tvllt~~~~~~ 167 (234)
T PRK06067 102 STLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDI-LNFLTEAKNLVD-LGKTILITLHPYAF 167 (234)
T ss_pred cchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHH-HHHHHHHHHHHh-CCCEEEEEecCCcC
Confidence 11222222 222222 58999999999644333332222 233 333444 48899999997764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.5e-05 Score=100.68 Aligned_cols=97 Identities=18% Similarity=0.139 Sum_probs=72.3
Q ss_pred HHhcCchhh-HhhcccchHH-HHHHHHHHHHhCCCC--cEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCC
Q 000778 1074 FVRMGAKDH-IMAGQSTFLT-ELSETALMLSSATRN--SLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHY 1149 (1288)
Q Consensus 1074 ~~~ig~~d~-i~~~~Stf~~-e~~~~~~il~~a~~~--sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~ 1149 (1288)
+..+|+... +.+...++++ |++++..+..++.++ .|+|||||++|.++.+...+. .+|..|.++ |.+||++||+
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~-~~L~~L~~~-G~TVIvVeHd 548 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLI-NTLKRLRDL-GNTVIVVEHD 548 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHH-HHHHHHHhC-CCEEEEEECC
Confidence 344555432 4566778874 555666666666654 899999999999999877664 677778665 8999999999
Q ss_pred chhhhhhcCCCceEEe------eeEEEEecCC
Q 000778 1150 HRLAVDYKKDPRVSLC------HMACQVGNGV 1175 (1288)
Q Consensus 1150 ~~l~~~~~~~~~v~~~------~~~~~~~~g~ 1175 (1288)
++.+. .++ +|+.+ +.|.++..|.
T Consensus 549 ~~~i~-~aD--~vi~LgpgaG~~~G~Iv~~g~ 577 (924)
T TIGR00630 549 EETIR-AAD--YVIDIGPGAGIHGGEVVASGT 577 (924)
T ss_pred HHHHh-hCC--EEEEecccccCCCCEEeeccC
Confidence 99876 677 88888 7788877664
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.5e-05 Score=103.82 Aligned_cols=157 Identities=20% Similarity=0.211 Sum_probs=102.6
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH---------------------------HHhhcCccccccc--
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------------ILAQVGADVPAEI-- 1064 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~---------------------------ilaq~G~~vPa~~-- 1064 (1288)
.+.+|++.-+ .+|+++++.||-|+||||||+.++|.. +.+|....+|--.
T Consensus 129 ~il~~~sg~~-~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 129 QILKDISGII-KPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred eeecCcceeE-cCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4677888777 789999999999999999999999832 1111111111100
Q ss_pred --------c-----------ccc----hHHHHHHhcCch--------hhHhhcccchHHHHHHHHHHHHhCCCCcEEEEe
Q 000778 1065 --------F-----------EIS----PVDRIFVRMGAK--------DHIMAGQSTFLTELSETALMLSSATRNSLVVLD 1113 (1288)
Q Consensus 1065 --------~-----------~l~----~~d~i~~~ig~~--------d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLD 1113 (1288)
+ +.. +.|.++.-+|.. ++..+|.|. +|.+++..+=..+.+++.+.+|
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSG--GerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSG--GERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccC--cccceeeeeeeeecCcceeeee
Confidence 0 000 223344444432 233333332 4555555555578999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCch-hhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1114 ELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHR-LAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1114 Epg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~-l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
|+++|.|......++. .++.+++..+.|++++-|... .+-.+.| .|.++..|.++..|..
T Consensus 286 e~t~GLDSsTal~iik-~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD--~v~lL~eG~~iy~Gp~ 346 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIK-ALRQLAHITGATALVSILQPSPEIYDLFD--DVILLSEGYQIYQGPR 346 (1391)
T ss_pred cccccccHHHHHHHHH-HHHHHHhhhcceEEEEeccCChHHHHhhh--heeeeeccceEEeccH
Confidence 9999999988777764 455566666888888887754 3344455 7899999999988753
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.5e-05 Score=85.06 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=33.4
Q ss_pred CCCC-cEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1104 ATRN-SLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1104 a~~~-sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
+... .++++|||-.+..|.-...++ .++..+.. .++-+|++||...+.
T Consensus 254 ~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~-~~~QviitTHSp~il 302 (303)
T PF13304_consen 254 AKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSK-KNIQVIITTHSPFIL 302 (303)
T ss_dssp TTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGG-GSSEEEEEES-GGG-
T ss_pred cCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCc-cCCEEEEeCccchhc
Confidence 3343 999999999999997555544 44444433 368899999998764
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.9e-05 Score=99.52 Aligned_cols=98 Identities=18% Similarity=0.164 Sum_probs=72.5
Q ss_pred HHHhcCchhh-HhhcccchH-HHHHHHHHHHHhCCCC--cEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcC
Q 000778 1073 IFVRMGAKDH-IMAGQSTFL-TELSETALMLSSATRN--SLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTH 1148 (1288)
Q Consensus 1073 i~~~ig~~d~-i~~~~Stf~-~e~~~~~~il~~a~~~--sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH 1148 (1288)
.+..+|+... +.....+++ +|.+++..+..++.++ .|+|||||++|.++.+...+. .+|..|.+ .|.|||++||
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~-~~L~~L~~-~G~TVIvVeH 549 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLI-ETLKHLRD-LGNTLIVVEH 549 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHH-HHHHHHHh-CCCEEEEEeC
Confidence 3455666532 456667777 4555566666666665 999999999999999887665 67777865 4899999999
Q ss_pred CchhhhhhcCCCceEEe------eeEEEEecCC
Q 000778 1149 YHRLAVDYKKDPRVSLC------HMACQVGNGV 1175 (1288)
Q Consensus 1149 ~~~l~~~~~~~~~v~~~------~~~~~~~~g~ 1175 (1288)
+++.+. .++ +|..+ +.|.++..|.
T Consensus 550 ~~~~i~-~aD--~vi~LgpgaG~~~G~iv~~g~ 579 (943)
T PRK00349 550 DEDTIR-AAD--YIVDIGPGAGVHGGEVVASGT 579 (943)
T ss_pred CHHHHH-hCC--EEEEeccccCCCCCEEeeccC
Confidence 999875 466 88888 7788877664
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00015 Score=72.15 Aligned_cols=118 Identities=16% Similarity=0.119 Sum_probs=56.4
Q ss_pred CcEEEEEecCCCChhHHHhhhhhHHHHhh-cCccccccccccchHHHHHHhcCchhhHhhcccchHH-HHHHHHHHHHhC
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLT-ELSETALMLSSA 1104 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~i~ilaq-~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a 1104 (1288)
+..++|+||+|+||||+++.++....... ...++-+............ ............. ...+........
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-----LIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-----hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence 46799999999999999999985433222 1122222221111111110 0000001111111 111122222222
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHH----HHHHHHhccCcEEEEEcCC
Q 000778 1105 TRNSLVVLDELGRGTSTSDGQAIAES----VLEHFVHKVQCRGLFSTHY 1149 (1288)
Q Consensus 1105 ~~~sLvLLDEpg~GTs~~Dg~aia~a----ile~l~~~~~~~vl~~TH~ 1149 (1288)
..+.+|++||+++-............ .........+..+|+++|.
T Consensus 77 ~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 77 LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 34799999999776666644322210 0111222346788888884
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00081 Score=81.53 Aligned_cols=153 Identities=16% Similarity=0.048 Sum_probs=85.6
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccc-cccccchHHHHH-HhcCchhhHhhc---
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPA-EIFEISPVDRIF-VRMGAKDHIMAG--- 1086 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa-~~~~l~~~d~i~-~~ig~~d~i~~~--- 1086 (1288)
+..+.+++ |.+ .+|++++|+|+||+||||||++|++..- +..|.+.-. +... . +..++ ..++.. .+...
T Consensus 145 g~~vid~l-~~i-~~Gq~i~I~G~sG~GKStLl~~I~~~~~-~~~gvI~~~Gerg~-e-v~e~~~~~l~~~-~l~r~v~v 218 (438)
T PRK07721 145 GVRAIDSL-LTV-GKGQRVGIFAGSGVGKSTLMGMIARNTS-ADLNVIALIGERGR-E-VREFIERDLGPE-GLKRSIVV 218 (438)
T ss_pred chhhhhee-eee-cCCcEEEEECCCCCCHHHHHHHHhcccC-CCeEEEEEEecCCc-c-HHHHHHhhcChh-hhcCeEEE
Confidence 34567777 887 7899999999999999999999987432 222221100 0000 0 11111 111111 01110
Q ss_pred --ccchHHHHH--------HHHHHHHhCCCCcEEEEe-----------------CCCCCCChHH--HHHHHHHHHHHHHh
Q 000778 1087 --QSTFLTELS--------ETALMLSSATRNSLVVLD-----------------ELGRGTSTSD--GQAIAESVLEHFVH 1137 (1288)
Q Consensus 1087 --~Stf~~e~~--------~~~~il~~a~~~sLvLLD-----------------Epg~GTs~~D--g~aia~aile~l~~ 1137 (1288)
.+.-...++ .+|.-++.....=||++| || -||..+| ..+....+++.+..
T Consensus 219 v~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~-P~~~G~dp~~~~~l~~ller~~~ 297 (438)
T PRK07721 219 VATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEP-PTTKGYTPSVFAILPKLLERTGT 297 (438)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCC-CccccCCHHHHHHHHHHHHHhcC
Confidence 011111111 122333344667788888 54 2344444 33344577777753
Q ss_pred -ccCc-----EEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1138 -KVQC-----RGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1138 -~~~~-----~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..|. ||++.+||++ ..+++ ++..++.|.++.++.
T Consensus 298 ~~~GsIT~~~TVlv~~hdm~--e~i~d--~v~~i~dG~Ivls~~ 337 (438)
T PRK07721 298 NASGSITAFYTVLVDGDDMN--EPIAD--TVRGILDGHFVLDRQ 337 (438)
T ss_pred CCCCCeeeEEEEEEECCCCC--chhhh--hEEEecCEEEEEecc
Confidence 2364 8999999988 36666 888899998887664
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00013 Score=79.55 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=56.1
Q ss_pred EEEEEecCCCChhHHHhhhhhHHHHhhcCccccccc-cccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCC
Q 000778 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-FEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN 1107 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~-~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~ 1107 (1288)
+++|+||+||||||+++.++........|..+--+. ..+. .......+. ...+.....+|... +..+ +..+|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~~~~~~~i~-q~~vg~~~~~~~~~---i~~a--Lr~~p 75 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-HESKRSLIN-QREVGLDTLSFENA---LKAA--LRQDP 75 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-ccCccceee-ecccCCCccCHHHH---HHHH--hcCCc
Confidence 689999999999999998765332111121111110 0000 000000000 00011111233221 1222 34689
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhh
Q 000778 1108 SLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAV 1154 (1288)
Q Consensus 1108 sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~ 1154 (1288)
+++++||+ .+... +..+++. +. .|..+++++|..+...
T Consensus 76 d~ii~gEi---rd~e~----~~~~l~~-a~-~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 76 DVILVGEM---RDLET----IRLALTA-AE-TGHLVMSTLHTNSAAK 113 (198)
T ss_pred CEEEEcCC---CCHHH----HHHHHHH-HH-cCCEEEEEecCCcHHH
Confidence 99999999 45442 3344543 33 4788999999987553
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=97.58 E-value=4.9e-05 Score=88.58 Aligned_cols=126 Identities=13% Similarity=0.053 Sum_probs=62.9
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCch-hhHhhcccchHHHHHHHHHHHHh
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTELSETALMLSS 1103 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~-d~i~~~~Stf~~e~~~~~~il~~ 1103 (1288)
..+..++|+||+||||||||+.+++.. ....+..+-.+...+.+.. -..+... .....+...+ .+.++.. ..+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~-~~~~~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~--~~~~~l~-~~L 215 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEI-PKDERIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKV--TPKDLLQ-SCL 215 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccC-CccccEEEEcCccccCCCC--CCEEEEEecCCCCCcCcc--CHHHHHH-HHh
Confidence 357899999999999999999988532 1111211101111111100 0000000 0000011111 1222111 124
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1104 ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1104 a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
..+|++|++||| .+. + ++++++.+. ..+..+|.++|....... .+ ++..+.++
T Consensus 216 r~~pd~ii~gE~---r~~-e----~~~~l~a~~-~g~~~~i~T~Ha~~~~~~-~~--Rl~~l~~~ 268 (308)
T TIGR02788 216 RMRPDRIILGEL---RGD-E----AFDFIRAVN-TGHPGSITTLHAGSPEEA-FE--QLALMVKS 268 (308)
T ss_pred cCCCCeEEEecc---CCH-H----HHHHHHHHh-cCCCeEEEEEeCCCHHHH-HH--HHHHHhhc
Confidence 589999999999 332 1 345677664 323356899999885443 33 45444444
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00032 Score=83.58 Aligned_cols=173 Identities=17% Similarity=0.141 Sum_probs=115.9
Q ss_pred CCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----------------
Q 000778 991 EPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA---------------- 1054 (1288)
Q Consensus 991 ~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila---------------- 1054 (1288)
.++|++++..-+- ..+.....||+|++ ..|++++|.|--|-|-+.|+-.|+|+...+
T Consensus 255 ~~vL~V~~L~v~~------~~~~~~v~~vs~~V-r~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~ 327 (501)
T COG3845 255 EVVLEVEDLSVKD------RRGVTAVKDVSFEV-RAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLS 327 (501)
T ss_pred CeEEEEeeeEeec------CCCCceeeeeeeEE-ecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCC
Confidence 4567776654221 11235578899999 889999999999999999999999965211
Q ss_pred ------hcCcccccccc------ccchHHHH-HHhcC---------------------------ch-hhHhhcccchH-H
Q 000778 1055 ------QVGADVPAEIF------EISPVDRI-FVRMG---------------------------AK-DHIMAGQSTFL-T 1092 (1288)
Q Consensus 1055 ------q~G~~vPa~~~------~l~~~d~i-~~~ig---------------------------~~-d~i~~~~Stf~-~ 1092 (1288)
.-..|||.+.- .+++.+.+ +.+.. +. .+......++| +
T Consensus 328 ~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGG 407 (501)
T COG3845 328 PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGG 407 (501)
T ss_pred HHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCc
Confidence 11246666541 22333322 11111 00 00001122333 3
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1093 ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1093 e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
.++.+.....+..+|+|||+.+|++|.|......|...+++ +.+ .|+.||+++-+++.+..+++ +|.+++.|.++.
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e-~r~-~G~AVLLiS~dLDEil~lsD--rIaVi~~Gri~~ 483 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE-LRD-AGKAVLLISEDLDEILELSD--RIAVIYEGRIVG 483 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHH-HHh-cCCEEEEEehhHHHHHHhhh--eeeeeeCCceec
Confidence 44555556668899999999999999998876666656665 434 48999999999999999999 999999998876
Q ss_pred cC
Q 000778 1173 NG 1174 (1288)
Q Consensus 1173 ~g 1174 (1288)
..
T Consensus 484 ~~ 485 (501)
T COG3845 484 IV 485 (501)
T ss_pred cc
Confidence 54
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00058 Score=68.70 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=56.5
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCC
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSAT 1105 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~ 1105 (1288)
.+..++|+||.|+||||+++.++.... +.+..+-. +. .............+... ............
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~----~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 83 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLY----LN-ASDLLEGLVVAELFGHF-------LVRLLFELAEKA 83 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEE----Ee-hhhhhhhhHHHHHhhhh-------hHhHHHHhhccC
Confidence 356799999999999999999996443 11111100 00 00011000000000000 122223334457
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh----ccCcEEEEEcCCch
Q 000778 1106 RNSLVVLDELGRGTSTSDGQAIAESVLEHFVH----KVQCRGLFSTHYHR 1151 (1288)
Q Consensus 1106 ~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~----~~~~~vl~~TH~~~ 1151 (1288)
.+.+|++||.... ....... ...+++.+.. ..++.+|++|+...
T Consensus 84 ~~~~lilDe~~~~-~~~~~~~-~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 84 KPGVLFIDEIDSL-SRGAQNA-LLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CCeEEEEeChhhh-hHHHHHH-HHHHHHhcCceeccCCCeEEEEecCccc
Confidence 8899999999554 1122222 2244444432 24788899988765
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.39 E-value=9e-05 Score=72.23 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=31.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhh
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~ 1048 (1288)
..++++++|.+ ..|++++|+||+|+|||||++++.
T Consensus 2 ~~aL~~vsl~i-~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 2 TTSLHGVLVDV-YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred ceEEEeeEEEE-cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 35678899988 678999999999999999999975
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00057 Score=77.66 Aligned_cols=111 Identities=14% Similarity=0.231 Sum_probs=62.4
Q ss_pred ccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHH
Q 000778 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSET 1097 (1288)
Q Consensus 1018 di~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~ 1097 (1288)
++++ + ..++.++|+||+|+|||+|+..|+.... +.|..|-. +. ...++..+.... .. . .+
T Consensus 95 ~~~~-i-~~~~~v~l~Gp~GtGKThLa~al~~~a~--~~G~~v~~----~~-~~~l~~~l~~a~--~~--~-------~~ 154 (259)
T PRK09183 95 SLSF-I-ERNENIVLLGPSGVGKTHLAIALGYEAV--RAGIKVRF----TT-AADLLLQLSTAQ--RQ--G-------RY 154 (259)
T ss_pred cCCc-h-hcCCeEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEE----Ee-HHHHHHHHHHHH--HC--C-------cH
Confidence 4444 3 4678899999999999999999975433 23422210 01 112222221100 00 0 11
Q ss_pred HHHHH-hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCc
Q 000778 1098 ALMLS-SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1098 ~~il~-~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
..++. ....+++++|||+|...-..++..+...++....++ + .+|++|+..
T Consensus 155 ~~~~~~~~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~-~-s~iiTsn~~ 206 (259)
T PRK09183 155 KTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEK-G-SMILTSNLP 206 (259)
T ss_pred HHHHHHHhcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhc-C-cEEEecCCC
Confidence 12222 246789999999986544445555566777665443 3 567777764
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00024 Score=76.70 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.9
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHH
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ 1051 (1288)
..|..++|+|||||||||+++.+++..
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999998754
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00051 Score=81.40 Aligned_cols=87 Identities=17% Similarity=0.305 Sum_probs=51.1
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHHhh---cCccccccccccchHHHHHH---hcCchhhHhhcccchHHHHHHHH
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ---VGADVPAEIFEISPVDRIFV---RMGAKDHIMAGQSTFLTELSETA 1098 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq---~G~~vPa~~~~l~~~d~i~~---~ig~~d~i~~~~Stf~~e~~~~~ 1098 (1288)
..|.+++|+||||+||||++..|+......+ ...++..+..+++-.+++-+ .+|+.-....... ++.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~-------~l~ 207 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGG-------DLQ 207 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcc-------cHH
Confidence 4578999999999999999999997554322 12344555444444444321 2222111111111 123
Q ss_pred HHHHhCCCCcEEEEeCCCCC
Q 000778 1099 LMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1099 ~il~~a~~~sLvLLDEpg~G 1118 (1288)
..+....+.++||+|++|+.
T Consensus 208 ~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 208 LALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred HHHHHhcCCCEEEEcCCCCC
Confidence 34445577899999999654
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00068 Score=82.73 Aligned_cols=86 Identities=19% Similarity=0.337 Sum_probs=51.2
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHhhc---CccccccccccchHHHHHH---hcCchhhHhhcccchHHHHHHHHH
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQV---GADVPAEIFEISPVDRIFV---RMGAKDHIMAGQSTFLTELSETAL 1099 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~---G~~vPa~~~~l~~~d~i~~---~ig~~d~i~~~~Stf~~e~~~~~~ 1099 (1288)
.|.+++|+||||+||||++..|++...+.+- .++++++..+++.++++-. .+|..-... ..-.+...
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~-------~~~~Dl~~ 327 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAV-------KDAADLRL 327 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeecc-------CCchhHHH
Confidence 4679999999999999999999976544321 2356666655555554422 122110000 01112222
Q ss_pred HHHhCCCCcEEEEeCCCCC
Q 000778 1100 MLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1100 il~~a~~~sLvLLDEpg~G 1118 (1288)
.+..+.+..++|+|.+|++
T Consensus 328 aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 328 ALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred HHHhccCCCeEEeCCCCcC
Confidence 3344566789999998654
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00027 Score=61.90 Aligned_cols=34 Identities=35% Similarity=0.511 Sum_probs=26.2
Q ss_pred cccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH
Q 000778 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1288)
Q Consensus 1017 ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i 1052 (1288)
.++.|. ..|.+.+|+||||+||||+|.+|..+.+
T Consensus 15 ~~~~~~--~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 15 ETIDFD--PRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred eEEeec--CCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 345554 3456899999999999999999985443
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0022 Score=81.01 Aligned_cols=110 Identities=25% Similarity=0.221 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhCC----CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1092 TELSETALMLSSAT----RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1092 ~e~~~~~~il~~a~----~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
+++++++.+++++. +|+++|||||++|.++.....+. .++..+. + +.+||++||++.++. .++ ++..++.
T Consensus 444 Ge~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~-~~l~~l~-~-~~~vi~iTH~~~~~~-~ad--~~~~l~k 517 (563)
T TIGR00634 444 GELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIA-KKLAQLS-E-RHQVLCVTHLPQVAA-HAD--AHFKVEK 517 (563)
T ss_pred hHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHh-c-CCEEEEEEChHHHHH-hcC--eEEEEEE
Confidence 45666766666554 46999999999999998776655 5666664 3 689999999999885 566 6666665
Q ss_pred EEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHc-C--CCHHHHHHHHHH
Q 000778 1168 ACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLA-G--IPDKVLQKAVAK 1217 (1288)
Q Consensus 1168 ~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~a-G--lP~~vi~~A~~~ 1217 (1288)
+.. . ..+.+....|. +..-=-++|||+ | +-+..+..|++.
T Consensus 518 ~~~--~----~~t~s~i~~L~----~~~r~~EiArml~G~~~t~~~~~~A~~l 560 (563)
T TIGR00634 518 EGL--D----GRTATRVRPLS----GEERVAELARMLAGLEKSDLTLAHAQEL 560 (563)
T ss_pred ccC--C----CcEEEEEEECC----ccHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 431 1 12333333342 222346799998 4 356667777765
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00066 Score=81.65 Aligned_cols=90 Identities=19% Similarity=0.345 Sum_probs=56.8
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHhh---cCccccccccccchHHHHHH---hcCchhhHhhcccchHHHHHHHHH
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQ---VGADVPAEIFEISPVDRIFV---RMGAKDHIMAGQSTFLTELSETAL 1099 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq---~G~~vPa~~~~l~~~d~i~~---~ig~~d~i~~~~Stf~~e~~~~~~ 1099 (1288)
.|++++|+||||+||||+++.|++..++.+ .+.++.+...+++.++++.. .+|..-.... ...++..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~-------~~~dl~~ 262 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIK-------DIADLQL 262 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCC-------CHHHHHH
Confidence 468999999999999999999998654332 33456666667777766432 2232111110 1112334
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1100 MLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1100 il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.+..+.+..++|+|.+ |.++.+.
T Consensus 263 al~~l~~~d~VLIDTa--Grsqrd~ 285 (420)
T PRK14721 263 MLHELRGKHMVLIDTV--GMSQRDQ 285 (420)
T ss_pred HHHHhcCCCEEEecCC--CCCcchH
Confidence 4455678899999986 6666554
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0017 Score=64.95 Aligned_cols=105 Identities=18% Similarity=0.195 Sum_probs=53.8
Q ss_pred EEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcE
Q 000778 1030 ILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSL 1109 (1288)
Q Consensus 1030 ~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sL 1109 (1288)
++|+||.|+||||+.+.++.. .|..+ ..+... .+... ........+..+.........|.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~-----l~~~~----~~i~~~-~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY-----LGFPF----IEIDGS-ELISS---------YAGDSEQKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH-----TTSEE----EEEETT-HHHTS---------STTHHHHHHHHHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhh-----ccccc----cccccc-ccccc---------ccccccccccccccccccccccee
Confidence 589999999999999999943 23111 011100 01100 111111122222222211225899
Q ss_pred EEEeCCCCCCChH------HHHHHHHHHHHHHHhcc----CcEEEEEcCCchhh
Q 000778 1110 VVLDELGRGTSTS------DGQAIAESVLEHFVHKV----QCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1110 vLLDEpg~GTs~~------Dg~aia~aile~l~~~~----~~~vl~~TH~~~l~ 1153 (1288)
|++||.-.-.... ....+...++..+.... ++.+|++|++.+..
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i 115 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKI 115 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGS
T ss_pred eeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhC
Confidence 9999974433322 22334445555554322 36888899986644
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00097 Score=78.95 Aligned_cols=112 Identities=18% Similarity=0.133 Sum_probs=56.4
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchH-HHHHHhcCchhhHhhcccchHHHHHHHHHHHHhC
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPV-DRIFVRMGAKDHIMAGQSTFLTELSETALMLSSA 1104 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~-d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a 1104 (1288)
++.+++|+||+||||||+|+.+.........+..+-.+.. +.+. ......+. ...+....-+|..- +..+ +.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp-~E~~~~~~~~~i~-q~evg~~~~~~~~~---l~~~--lr 193 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP-IEYVHRNKRSLIN-QREVGLDTLSFANA---LRAA--LR 193 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC-hhhhccCccceEE-ccccCCCCcCHHHH---HHHh--hc
Confidence 4578999999999999999998753221111211111110 0000 00000000 00010011122211 2222 34
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1105 TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1105 ~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
.+|++|++||+ .++... ..+++. +. .|..++.++|-.+..
T Consensus 194 ~~pd~i~vgEi---rd~~~~----~~~l~a-a~-tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 194 EDPDVILIGEM---RDLETV----ELALTA-AE-TGHLVFGTLHTNSAA 233 (343)
T ss_pred cCCCEEEEeCC---CCHHHH----HHHHHH-HH-cCCcEEEEEcCCCHH
Confidence 79999999999 555432 233443 23 488899999986644
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0031 Score=80.53 Aligned_cols=95 Identities=19% Similarity=0.317 Sum_probs=58.8
Q ss_pred ccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC----ccccccccccchHHHHHH---hcCchhhHhhccc
Q 000778 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----ADVPAEIFEISPVDRIFV---RMGAKDHIMAGQS 1088 (1288)
Q Consensus 1016 ~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G----~~vPa~~~~l~~~d~i~~---~ig~~d~i~~~~S 1088 (1288)
.++.++.. ..+++++|+||||+||||++..|++..... .| .++.++..+++..+++.. .+|+.-....
T Consensus 175 l~~~~~~~-~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~-~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~--- 249 (767)
T PRK14723 175 LRDEDALL-AQGGVLALVGPTGVGKTTTTAKLAARCVAR-EGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK--- 249 (767)
T ss_pred ccCCCccc-CCCeEEEEECCCCCcHHHHHHHHHhhHHHH-cCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC---
Confidence 34444444 357899999999999999999999765332 23 355666666666665432 2332111111
Q ss_pred chHHHHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1089 TFLTELSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1089 tf~~e~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
.-.++..++..+.+.++||+|=+||.-
T Consensus 250 ----~~~~l~~al~~~~~~D~VLIDTAGRs~ 276 (767)
T PRK14723 250 ----DAADLRFALAALGDKHLVLIDTVGMSQ 276 (767)
T ss_pred ----CHHHHHHHHHHhcCCCEEEEeCCCCCc
Confidence 122344555556677999999886553
|
|
| >PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0027 Score=68.41 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=59.3
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHhh--cC---------ccccccccccchHHHH---HHhcCchhhHhh-cc---
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQ--VG---------ADVPAEIFEISPVDRI---FVRMGAKDHIMA-GQ--- 1087 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq--~G---------~~vPa~~~~l~~~d~i---~~~ig~~d~i~~-~~--- 1087 (1288)
.|.+++|+||.|+||||++-+++......+ .| .|+..+...-.+..++ +..+...++... ..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccc
Confidence 578999999999999999999997554311 01 1222222111111221 111111111110 00
Q ss_pred ------------cchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCh----HHHHHHHHHHHHHHHhccCcEEEEEcCC
Q 000778 1088 ------------STFLTELSETALMLSSATRNSLVVLDELGRGTST----SDGQAIAESVLEHFVHKVQCRGLFSTHY 1149 (1288)
Q Consensus 1088 ------------Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~----~Dg~aia~aile~l~~~~~~~vl~~TH~ 1149 (1288)
......+.++...+....++.+|++|=+.+=+.. .+...-....++.++++.|+++|++.|.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 188 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVILVHHT 188 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEEEEEE
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 0012334455555555567999999966443332 1111234456667777779998888885
|
|
| >KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.03 E-value=9.9e-05 Score=91.07 Aligned_cols=289 Identities=9% Similarity=-0.078 Sum_probs=170.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhh-hcCCCcc------cceecC
Q 000778 913 PNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASD-FYEGPTC------RPVILD 985 (1288)
Q Consensus 913 p~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~-~~~~~~~------rP~~~~ 985 (1288)
.+-..+..++.+.+.++..++..|.. .+.+..+.+-++...+..+=.+.-.|.+|- -|-.+-. |=.+..
T Consensus 544 ~e~~~~qk~Y~~~Q~~ivrevikia~----tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~gs~rl~l~~ 619 (902)
T KOG0219|consen 544 DEFMSLQKEYDEAQNEIVREIIKIAA----TYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLGSKRLELKQ 619 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccchhHHHHHh
Confidence 34456666777777776666655533 233333333333333333333333343221 1111111 111111
Q ss_pred CCCCCCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccc-
Q 000778 986 SCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI- 1064 (1288)
Q Consensus 986 ~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~- 1064 (1288)
...|+++ .+.+||++..+. .-++.++++.+-. .+..---.||++++|++|||.+||-++.+++.++.|+..-
T Consensus 620 ---~rHp~lE-~Qd~~~fIpNdv--~le~~~~~~~IiT-GpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il 692 (902)
T KOG0219|consen 620 ---SRHPVLE-GQDEIPFIPNDV--VLEKGKCRMLIIT-GPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGIL 692 (902)
T ss_pred ---cccchhh-ccccCCCCCCcc--ccccCCceEEEEe-CCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHH
Confidence 1223333 467899998642 1245677766643 2333446899999999999999999999999999998764
Q ss_pred cccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEE
Q 000778 1065 FEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGL 1144 (1288)
Q Consensus 1065 ~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl 1144 (1288)
++++.-|..+. -+.....+...++++.++.....++....-.+....+|-|+++.+.++.-+.+.....|.....+-+.
T Consensus 693 ~RVGA~D~q~k-G~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt 771 (902)
T KOG0219|consen 693 TRVGAGDSQLK-GISTFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELT 771 (902)
T ss_pred hhhccchhhhc-chHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHH
Confidence 45555554443 23444445555666666655555555567778899999999999999888888766666655567778
Q ss_pred EEcCCchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 000778 1145 FSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEAI 1224 (1288)
Q Consensus 1145 ~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~~~~le~~ 1224 (1288)
+.+|++..+..+.-...|.+ .+.. -+.-.|.-+.+..-.+++.++|...-.+.++.+++.+..++++..
T Consensus 772 ~lae~~~~vKn~h~~a~i~~--~~~~---------llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~~~ 840 (902)
T KOG0219|consen 772 KLAEQLPTVKNLHVTAQIEN--DDIT---------LLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELEDELVI 840 (902)
T ss_pred hhhhhhhhhhhheeeeEecC--cchh---------hHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHHHHHhh
Confidence 88999888775332111111 1100 011122333445556778888887777777777776655555443
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0018 Score=75.65 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH---HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1092 TELSETALMLSSATRNSLVVLDELGRGTSTSD---GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1092 ~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D---g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
+|+++.+.++..+...++.++||| .+.+| ....| .++..|.. ....+|+|.||+.+..++.+
T Consensus 217 gelqrfaia~~~vq~advyMFDEp---SsYLDVKQRLkaA-~~IRsl~~-p~~YiIVVEHDLsVLDylSD 281 (592)
T KOG0063|consen 217 GELQRFAIAMVCVQKADVYMFDEP---SSYLDVKQRLKAA-ITIRSLIN-PDRYIIVVEHDLSVLDYLSD 281 (592)
T ss_pred chhhhhhhhhhhhhhcceeEecCC---cccchHHHhhhHH-HHHHHhhC-CCCeEEEEEeechHHHhhhc
Confidence 677888888888899999999999 66666 33323 45566654 36789999999999888776
|
|
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0031 Score=70.30 Aligned_cols=127 Identities=17% Similarity=0.205 Sum_probs=64.3
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHHhh------cC-ccccccc-cccchHHHHHHhcCch-hhHhhcc---cch-H
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ------VG-ADVPAEI-FEISPVDRIFVRMGAK-DHIMAGQ---STF-L 1091 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq------~G-~~vPa~~-~~l~~~d~i~~~ig~~-d~i~~~~---Stf-~ 1091 (1288)
..|+++.|+||+|+|||||+.+++....+.. .+ .|+-.+. .....+.++...++.. +.+.... .-+ .
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCCH
Confidence 5689999999999999999999986543321 11 2332222 1111122222222211 1111110 001 1
Q ss_pred HHH----HHHHHHHHhCCCCcEEEEeCCCCC------CC--hHHHHHHH---HHHHHHHHhccCcEEEEEcCCch
Q 000778 1092 TEL----SETALMLSSATRNSLVVLDELGRG------TS--TSDGQAIA---ESVLEHFVHKVQCRGLFSTHYHR 1151 (1288)
Q Consensus 1092 ~e~----~~~~~il~~a~~~sLvLLDEpg~G------Ts--~~Dg~aia---~aile~l~~~~~~~vl~~TH~~~ 1151 (1288)
.++ .++...+....++.||++|-+++= .. ..+..... ...|..++++.+|++|++.|-..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~~ 171 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVTA 171 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEee
Confidence 122 222233333338999999999431 00 01111111 24555666677999999987653
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0024 Score=71.65 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=31.2
Q ss_pred CCCCcEEEEeCCCCC------CChHHHHHHHHHHHHHHHhccCcEEEEEcCCch
Q 000778 1104 ATRNSLVVLDELGRG------TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHR 1151 (1288)
Q Consensus 1104 a~~~sLvLLDEpg~G------Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~ 1151 (1288)
..++.+||+| |..+ .++.+...+ ...+..++++.+|++|+++|..-
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~-~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAV-IKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHH-HHHHHHHHHHhCCEEEEEeccCc
Confidence 4799999999 5432 233333333 34566666667999999999864
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >smart00333 TUDOR Tudor domain | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00074 Score=58.08 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=38.7
Q ss_pred ccccceEEeecCCCcEEeEEEEeeeCCCCcEEEEccC-Cchhhhcc
Q 000778 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDL 149 (1288)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-gd~e~l~l 149 (1288)
-+|..|.+.| .|+.||.|+|+++++. +.+.|.|.| |..|++..
T Consensus 4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~~ 47 (57)
T smart00333 4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVPP 47 (57)
T ss_pred CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEeH
Confidence 4899999999 9999999999999988 889999977 99987653
|
Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished). |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0042 Score=67.35 Aligned_cols=143 Identities=19% Similarity=0.150 Sum_probs=75.4
Q ss_pred CcEEEEEecCCCChhHHHhhhhhHHHHhhcCcc----ccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHH
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD----VPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLS 1102 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~----vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~ 1102 (1288)
|.+++|+||-|+||||++..++.-... .|.. .|.-..+-+ ...+.+++|..-... .... ..++.+... .
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~--~g~~v~i~k~~~d~~~~-~~~i~~~lg~~~~~~-~~~~-~~~~~~~~~--~ 74 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE--RGMKVLVFKPAIDDRYG-EGKVVSRIGLSREAI-PVSS-DTDIFELIE--E 74 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH--cCCeEEEEecccccccc-CCcEecCCCCcccce-EeCC-hHHHHHHHH--h
Confidence 578999999999999999888743322 2321 122111111 223455555311100 0000 111111111 1
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh----------hhhcCCCceEEeeeEEEEe
Q 000778 1103 SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA----------VDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1103 ~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~----------~~~~~~~~v~~~~~~~~~~ 1172 (1288)
...+.++|++||... ++... ...+++.+.. .|.+++++.++.++. ..+++ .|..+..-|...
T Consensus 75 ~~~~~dvviIDEaq~----l~~~~-v~~l~~~l~~-~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD--~V~~l~~vC~~C 146 (190)
T PRK04296 75 EGEKIDCVLIDEAQF----LDKEQ-VVQLAEVLDD-LGIPVICYGLDTDFRGEPFEGSPYLLALAD--KVTELKAICVHC 146 (190)
T ss_pred hCCCCCEEEEEcccc----CCHHH-HHHHHHHHHH-cCCeEEEEecCcccccCcCchHHHHHHhcC--eEEEeeEEcccc
Confidence 345779999999932 21111 2356666654 489999999984422 23344 666666655442
Q ss_pred cCCCCcceEEEeeEecC
Q 000778 1173 NGVGGVEEVTFLYRLSP 1189 (1288)
Q Consensus 1173 ~g~~~~~~l~~~ykl~~ 1189 (1288)
| ..-+|++|+..
T Consensus 147 -g----~~a~~~~r~~~ 158 (190)
T PRK04296 147 -G----RKATMNQRLID 158 (190)
T ss_pred -C----CccceEEEEeC
Confidence 2 23477788874
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0037 Score=71.34 Aligned_cols=101 Identities=20% Similarity=0.163 Sum_probs=60.0
Q ss_pred CcEEEEEecCCCChhHHHhhhhhHHHHhhcC---ccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHh
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSS 1103 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G---~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~ 1103 (1288)
+..++|+||.|.|||.|+.+|+..++- +.| .|+++ ..++..+.. .| ......+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~-~~g~~v~y~~~--------~~l~~~l~~---------~~----~~~~~~~~~ 174 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR-KKGVPVLYFPF--------VEGFGDLKD---------DF----DLLEAKLNR 174 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh-hcCceEEEEEH--------HHHHHHHHH---------HH----HHHHHHHHH
Confidence 456999999999999999999864332 213 23332 112222110 01 111223445
Q ss_pred CCCCcEEEEeCCCC---CCCh--HHHHHHHHHHHHHHHhccCcEEEEEcCCc
Q 000778 1104 ATRNSLVVLDELGR---GTST--SDGQAIAESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1104 a~~~sLvLLDEpg~---GTs~--~Dg~aia~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
+...+|||||+++. |+.. .........|+++.... +..+|++|+..
T Consensus 175 ~~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~-~k~tIitsn~~ 225 (266)
T PRK06921 175 MKKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLN-HKPILISSELT 225 (266)
T ss_pred hcCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHC-CCCEEEECCCC
Confidence 57889999999966 6532 22333445777766543 56778888874
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0023 Score=64.27 Aligned_cols=114 Identities=17% Similarity=0.152 Sum_probs=54.7
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHh-----hcC-ccccc--cccccchHHHHHHhcCchhhHhhcccchHHHH-HH
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILA-----QVG-ADVPA--EIFEISPVDRIFVRMGAKDHIMAGQSTFLTEL-SE 1096 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ila-----q~G-~~vPa--~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~-~~ 1096 (1288)
.+.+++|+||.|+||||+++.++.-.... +.. .++.+ ....-.++..++..++....- .....++ ..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cCCHHHHHHH
Confidence 45789999999999999999999644321 111 12222 111223444555555433221 1111222 22
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCC
Q 000778 1097 TALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHY 1149 (1288)
Q Consensus 1097 ~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~ 1149 (1288)
+...+... ...+|++||. +.+. ..-....|..+.+..++.+|++-+.
T Consensus 79 ~~~~l~~~-~~~~lviDe~----~~l~-~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRR-RVVLLVIDEA----DHLF-SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHC-TEEEEEEETT----HHHH-THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHhc-CCeEEEEeCh----HhcC-CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 33333322 2269999998 2221 1112244455555556777776554
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0035 Score=71.04 Aligned_cols=104 Identities=15% Similarity=0.209 Sum_probs=59.6
Q ss_pred CcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCC
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATR 1106 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~ 1106 (1288)
+.-++|+||.|+|||+|+..|+.-. .+.|..|- +.-...++..+.... ...+ ....+....+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a--~~~g~~v~-----f~t~~~l~~~l~~~~----~~~~-------~~~~l~~l~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA--CQAGHRVL-----FATAAQWVARLAAAH----HAGR-------LQAELVKLGR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH--HHCCCchh-----hhhHHHHHHHHHHHH----hcCc-------HHHHHHHhcc
Confidence 4568999999999999999998533 23343221 111223333332110 0111 1122333467
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCc
Q 000778 1107 NSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1107 ~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
++||||||+|.--...+...+...++..-.++ ..+|++|+..
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~--~s~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYER--ASLIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhc--CCEEEEcCCC
Confidence 89999999976544444555566666654333 3577788764
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0028 Score=70.74 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=54.7
Q ss_pred cEEEEEecCCCChhHHHhhhhhHHHHhhc-CccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCC
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQV-GADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATR 1106 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLr~i~~i~ilaq~-G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~ 1106 (1288)
..+.|.||.|+|||+|++.+|.-..-... ..|++.... ..+.. .++..+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~----------------------~~~~~------~~~~~~~~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS----------------------QYFSP------AVLENLEQ 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh----------------------hhhhH------HHHhhccc
Confidence 46899999999999999999964332211 112222100 00000 12333457
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCc
Q 000778 1107 NSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1107 ~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
.++|+|||+.......+.......+++.+.+. +.++|++|++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~-~~~illits~~ 134 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ-GKTLLLISADC 134 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHc-CCcEEEEeCCC
Confidence 89999999977543333233345677776554 56666666654
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0033 Score=71.83 Aligned_cols=37 Identities=35% Similarity=0.420 Sum_probs=28.8
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ 1051 (1288)
..++++.-+. ..|++++|+||.|+|||||+.+++.-.
T Consensus 18 ~~Ld~~~gG~-~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 18 PVLNKLTKGL-RKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred ceeeeeeEEE-cCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3445554444 678999999999999999999998533
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0095 Score=66.29 Aligned_cols=25 Identities=20% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhh
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~ 1049 (1288)
.+|++++|+||+|+|||||..+++.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~ 42 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAY 42 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHH
Confidence 5789999999999999999998874
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.006 Score=76.65 Aligned_cols=111 Identities=22% Similarity=0.237 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhCC----CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1092 TELSETALMLSSAT----RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1092 ~e~~~~~~il~~a~----~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
+++++++.++.++. +|+++|+|||.+|+++.....++ .++..+.+ ++++|++||++.++. +++ +...+..
T Consensus 434 Ge~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~-~~l~~l~~--~~qvi~iTH~~~~~~-~ad--~~~~v~k 507 (553)
T PRK10869 434 GELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVG-KLLRQLGE--STQVMCVTHLPQVAG-CGH--QHFFVSK 507 (553)
T ss_pred HHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhc--CCEEEEEecCHHHHH-hCC--EEEEEec
Confidence 56677777766653 68999999999999998666554 56666643 588999999999874 555 3333322
Q ss_pred EEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHc-C--CCHHHHHHHHHHH
Q 000778 1168 ACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLA-G--IPDKVLQKAVAKS 1218 (1288)
Q Consensus 1168 ~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~a-G--lP~~vi~~A~~~~ 1218 (1288)
+. . +..+.+-.-.| .+..---++|||+ | +.+.-+..|++..
T Consensus 508 ~~--~----~~~t~s~i~~L----~~~~R~~EiARMl~G~~~t~~~~~~A~eLl 551 (553)
T PRK10869 508 ET--D----GGMTETHMQPL----DKKARLQELARLLGGSEVTRNTLANAKELL 551 (553)
T ss_pred cc--c----CCeeeEEEEEC----ChhHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 21 1 11122222233 2223346799998 4 3566788887753
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0081 Score=68.56 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=49.1
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHH-hhcCccccccccccchHHHHHHh---cCchhhHhhcccchHHHHHHHHHHH
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVIL-AQVGADVPAEIFEISPVDRIFVR---MGAKDHIMAGQSTFLTELSETALML 1101 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~il-aq~G~~vPa~~~~l~~~d~i~~~---ig~~d~i~~~~Stf~~e~~~~~~il 1101 (1288)
++..++|+||||+||||+++.|+..... .....++-+...+++.+.++-.. ++..-..... ...+.+...-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~----~~~l~~~l~~l 149 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD----EAAMTRALTYF 149 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCC----HHHHHHHHHHH
Confidence 4689999999999999999999865321 11223344443344444444322 2211000000 11222222222
Q ss_pred HhCCCCcEEEEeCCCCCC
Q 000778 1102 SSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1102 ~~a~~~sLvLLDEpg~GT 1119 (1288)
....+.++||+|-||+.-
T Consensus 150 ~~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 150 KEEARVDYILIDTAGKNY 167 (270)
T ss_pred HhcCCCCEEEEECCCCCc
Confidence 333468999999998764
|
|
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0056 Score=67.87 Aligned_cols=127 Identities=16% Similarity=0.140 Sum_probs=65.5
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHHhh------cC-cccccccc-ccchHHHHHHhcCch-hhHhhcc-----cch
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ------VG-ADVPAEIF-EISPVDRIFVRMGAK-DHIMAGQ-----STF 1090 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq------~G-~~vPa~~~-~l~~~d~i~~~ig~~-d~i~~~~-----Stf 1090 (1288)
..|+++.|+||+|+|||||+.+++....... .+ .|+-.+.. ....+.++....+.. +.+.... .+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~- 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYN- 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCC-
Confidence 5689999999999999999999986554332 11 33333221 111222233322211 1111111 11
Q ss_pred HHHHHHHH-HHHH--hCCCCcEEEEeCCCCCCCh--------HHHHHHH---HHHHHHHHhccCcEEEEEcCCchh
Q 000778 1091 LTELSETA-LMLS--SATRNSLVVLDELGRGTST--------SDGQAIA---ESVLEHFVHKVQCRGLFSTHYHRL 1152 (1288)
Q Consensus 1091 ~~e~~~~~-~il~--~a~~~sLvLLDEpg~GTs~--------~Dg~aia---~aile~l~~~~~~~vl~~TH~~~l 1152 (1288)
..++..+. .+.. ....++||++|-+..=... .+..... ...|..++++.++++|+++|-...
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~~ 171 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRAK 171 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEeee
Confidence 12222221 1111 1457899999998421111 1111211 244666667779999999986543
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0081 Score=71.15 Aligned_cols=90 Identities=17% Similarity=0.235 Sum_probs=48.8
Q ss_pred CcEEEEEecCCCChhHHHhhhhhHHHHhhcC---ccccccccccchHHHHHH---hcCchhhHhhcccchHHHHHHHHHH
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFV---RMGAKDHIMAGQSTFLTELSETALM 1100 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G---~~vPa~~~~l~~~d~i~~---~ig~~d~i~~~~Stf~~e~~~~~~i 1100 (1288)
+.+++|+||||+||||++..||... ...| .++-++..+++-++++-+ .+|..-... .+ ..++.+....
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~---~d-~~~L~~aL~~ 314 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RD-EAAMTRALTY 314 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH--HHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEec---CC-HHHHHHHHHH
Confidence 4689999999999999999999643 2334 234444444444555433 222110000 00 1222222111
Q ss_pred HHhCCCCcEEEEeCCCCCCChH
Q 000778 1101 LSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1101 l~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
+....+.++||+|-+||.-...
T Consensus 315 lk~~~~~DvVLIDTaGRs~kd~ 336 (436)
T PRK11889 315 FKEEARVDYILIDTAGKNYRAS 336 (436)
T ss_pred HHhccCCCEEEEeCccccCcCH
Confidence 2222357999999997754433
|
|
| >cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0015 Score=54.03 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=37.3
Q ss_pred ccceEEeecCCCcEEeEEEEeeeCCCCcEEEEccC-Cchhhhcc
Q 000778 107 RKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDL 149 (1288)
Q Consensus 107 g~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-gd~e~l~l 149 (1288)
|..|.+.|++|+.||.|+|.+.++ ++...|.|.| |..|.+.+
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~ 43 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPL 43 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeH
Confidence 678999999999999999999998 7779999977 99887654
|
For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0072 Score=74.11 Aligned_cols=119 Identities=20% Similarity=0.179 Sum_probs=64.1
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC---ccccccccccchHHHHHHhcCch-hhHhhcccchHHHHHHHHHH
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTELSETALM 1100 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G---~~vPa~~~~l~~~d~i~~~ig~~-d~i~~~~Stf~~e~~~~~~i 1100 (1288)
.+|.+++|.|++|+|||||+.+++... ++.| .|+-.+.. ...+..-..++|.. +++..-..+ .+.++...
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~--a~~g~kvlYvs~EEs-~~qi~~ra~rlg~~~~~l~~~~e~---~~~~I~~~ 165 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQL--AKNQMKVLYVSGEES-LQQIKMRAIRLGLPEPNLYVLSET---NWEQICAN 165 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEECcCC-HHHHHHHHHHcCCChHHeEEcCCC---CHHHHHHH
Confidence 578999999999999999999997533 2332 34443321 11111112344432 111111111 12233333
Q ss_pred HHhCCCCcEEEEeCCCCCCC---------hHHHHHHHHHHHHHHHhccCcEEEEEcCCch
Q 000778 1101 LSSATRNSLVVLDELGRGTS---------TSDGQAIAESVLEHFVHKVQCRGLFSTHYHR 1151 (1288)
Q Consensus 1101 l~~a~~~sLvLLDEpg~GTs---------~~Dg~aia~aile~l~~~~~~~vl~~TH~~~ 1151 (1288)
+. ..++++|++|....=.. ..+....+ ..|..++++.++++|+++|...
T Consensus 166 i~-~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~-~~L~~~ak~~giTvllt~hvtk 223 (454)
T TIGR00416 166 IE-EENPQACVIDSIQTLYSPDISSAPGSVSQVRECT-AELMRLAKTRGIAIFIVGHVTK 223 (454)
T ss_pred HH-hcCCcEEEEecchhhcccccccCCCCHHHHHHHH-HHHHHHHHHhCCEEEEEecccc
Confidence 32 35799999998732111 11112222 2344566677999999999643
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0053 Score=69.04 Aligned_cols=106 Identities=20% Similarity=0.284 Sum_probs=61.9
Q ss_pred cEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCC
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN 1107 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~ 1107 (1288)
..++|.|+.|+|||+|+..|+.-. .+.|..|- .+. +..++..+... |...-.....++..+...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~----~it-~~~l~~~l~~~---------~~~~~~~~~~~l~~l~~~ 163 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVL----IIT-VADIMSAMKDT---------FSNSETSEEQLLNDLSNV 163 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEE----EEE-HHHHHHHHHHH---------HhhccccHHHHHHHhccC
Confidence 358999999999999999998533 23342221 111 22233322111 110000112244445689
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCc
Q 000778 1108 SLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1108 sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
+||+|||+|.-..+.....+...|+++-... ...+|++|-..
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~-~~~tiitSNl~ 205 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSS-KRPTGMLTNSN 205 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCCEEEeCCCC
Confidence 9999999988665554666777788764333 46677777654
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0044 Score=75.30 Aligned_cols=86 Identities=22% Similarity=0.340 Sum_probs=48.7
Q ss_pred CcEEEEEecCCCChhHHHhhhhhHHHHhh---cCccccccccccchHHHHHH--h-cCchhhHhhcccchHHHHHHHHHH
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQ---VGADVPAEIFEISPVDRIFV--R-MGAKDHIMAGQSTFLTELSETALM 1100 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~i~ilaq---~G~~vPa~~~~l~~~d~i~~--~-ig~~d~i~~~~Stf~~e~~~~~~i 1100 (1288)
+++++|+||+|+||||++-.|+....+.+ ...+|.++..+.+..+++.. + ++..-.... ...++...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~-------~~~~l~~~ 293 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVY-------DPKELAKA 293 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccC-------CHHhHHHH
Confidence 56899999999999999998886443112 22344444433333333321 1 221110000 11234444
Q ss_pred HHhCCCCcEEEEeCCCCCC
Q 000778 1101 LSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1101 l~~a~~~sLvLLDEpg~GT 1119 (1288)
+....+.++||+|.||+.-
T Consensus 294 l~~~~~~DlVlIDt~G~~~ 312 (424)
T PRK05703 294 LEQLRDCDVILIDTAGRSQ 312 (424)
T ss_pred HHHhCCCCEEEEeCCCCCC
Confidence 5555678999999997643
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0059 Score=72.88 Aligned_cols=120 Identities=21% Similarity=0.182 Sum_probs=63.3
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHHh-hcCccccccccccchHHHHHHhcCch-hhHhhcccchHHHHHHHHHHHH
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILA-QVGADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTELSETALMLS 1102 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ila-q~G~~vPa~~~~l~~~d~i~~~ig~~-d~i~~~~Stf~~e~~~~~~il~ 1102 (1288)
.+|.+++|.|++|+|||||+.+++...... ....|+-.+.. ...+..-..++|.. +++.....+ .+.++...+.
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rlg~~~~~l~l~~e~---~le~I~~~i~ 155 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRLGISTENLYLLAET---NLEDILASIE 155 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHcCCCcccEEEEccC---cHHHHHHHHH
Confidence 568999999999999999999998533221 12234443321 11111123455532 222111111 1222322222
Q ss_pred hCCCCcEEEEeCCCC----CCC-----hHHHHHHHHHHHHHHHhccCcEEEEEcCCc
Q 000778 1103 SATRNSLVVLDELGR----GTS-----TSDGQAIAESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1103 ~a~~~sLvLLDEpg~----GTs-----~~Dg~aia~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
..+|++|++|+... ..+ ......++ ..|..++++.++++|++.|-.
T Consensus 156 -~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~-~~L~~lak~~~itvilvghvt 210 (372)
T cd01121 156 -ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECT-AELMRFAKERNIPIFIVGHVT 210 (372)
T ss_pred -hcCCcEEEEcchHHhhccccccCCCCHHHHHHHH-HHHHHHHHHcCCeEEEEeecc
Confidence 35899999999721 110 01111222 234455566799999998853
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >smart00743 Agenet Tudor-like domain present in plant sequences | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.002 Score=56.44 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=33.4
Q ss_pred ccccceEEeecCCCcEEeEEEEeeeCCCCcEEEEccC
Q 000778 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD 141 (1288)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd 141 (1288)
-+|..|.|+|+.++.||.|+|+.++. .++|.|.|++
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~ 39 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLT 39 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECC
Confidence 38999999999999999999999998 6679999987
|
Domain in plant sequences with possible chromatin-associated functions. |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0041 Score=70.78 Aligned_cols=35 Identities=31% Similarity=0.417 Sum_probs=25.6
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhh
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~ 1049 (1288)
+.+.+...+.....+++|+||||+||||+++.++.
T Consensus 31 ~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 31 AMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 44444444323345899999999999999999874
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0072 Score=74.06 Aligned_cols=89 Identities=19% Similarity=0.236 Sum_probs=50.9
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHhh---cCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHH
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQ---VGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLS 1102 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq---~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~ 1102 (1288)
.|.+++|+||+|+||||++..|+......+ ...++..+..+++-.+++... +..-.+ .... ......+..++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~y-a~iLgv--~v~~-a~d~~~L~~aL~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSY-GRQLGI--AVHE-ADSAESLLDLLE 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHh-hcccCc--eeEe-cCcHHHHHHHHH
Confidence 468999999999999999999986544322 223445544444433433221 100000 0000 001123444555
Q ss_pred hCCCCcEEEEeCCCCC
Q 000778 1103 SATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1103 ~a~~~sLvLLDEpg~G 1118 (1288)
...+.++||+|.+|++
T Consensus 425 ~l~~~DLVLIDTaG~s 440 (559)
T PRK12727 425 RLRDYKLVLIDTAGMG 440 (559)
T ss_pred HhccCCEEEecCCCcc
Confidence 5567899999999875
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0074 Score=68.91 Aligned_cols=105 Identities=19% Similarity=0.248 Sum_probs=63.5
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCC
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSAT 1105 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~ 1105 (1288)
.+.-++|+||.|+|||.|+..|+..+. +.|..|-. +. ...++..+.... ... .....+....
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~--~~g~~v~f----~~-~~~L~~~l~~a~----~~~-------~~~~~l~~l~ 166 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALI--ENGWRVLF----TR-TTDLVQKLQVAR----REL-------QLESAIAKLD 166 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHH--HcCCceee----ee-HHHHHHHHHHHH----hCC-------cHHHHHHHHh
Confidence 345699999999999999999985443 23432211 11 233444332111 000 1122344456
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCc
Q 000778 1106 RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1106 ~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
.++||||||+|.-........+...++++..++ +.+|++|...
T Consensus 167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~--~s~IiTSN~~ 209 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISARYER--RSILITANQP 209 (269)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHhC--CCEEEEcCCC
Confidence 889999999987655555555666777765443 5678888764
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.003 Score=76.22 Aligned_cols=133 Identities=17% Similarity=0.130 Sum_probs=67.9
Q ss_pred ccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcc--ccccccccc-hHHHHHHhcCchhh-HhhcccchHHHHH
Q 000778 1020 TIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD--VPAEIFEIS-PVDRIFVRMGAKDH-IMAGQSTFLTELS 1095 (1288)
Q Consensus 1020 ~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~--vPa~~~~l~-~~d~i~~~ig~~d~-i~~~~Stf~~e~~ 1095 (1288)
.+.+ .+|+.++|.|+||+|||||+++|++..- +..|.+ +......+. ++...+..-|.... +....+.-+..++
T Consensus 150 ll~I-~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r 227 (432)
T PRK06793 150 MLTI-GIGQKIGIFAGSGVGKSTLLGMIAKNAK-ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQ 227 (432)
T ss_pred ccee-cCCcEEEEECCCCCChHHHHHHHhccCC-CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHH
Confidence 4777 6789999999999999999999997432 122211 111111111 11112211111111 1112222233333
Q ss_pred H-HHHH-------HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1096 E-TALM-------LSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1096 ~-~~~i-------l~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
. .+.+ ++....+-|||||+| |...+........+...-.. |-+..+.||...+......
T Consensus 228 ~ra~~~a~~iAEyfr~~G~~VLlilDsl---Tr~a~A~reisl~~~e~p~~-G~~~~~~s~l~~L~ERag~ 294 (432)
T PRK06793 228 LRAAKLATSIAEYFRDQGNNVLLMMDSV---TRFADARRSVDIAVKELPIG-GKTLLMESYMKKLLERSGK 294 (432)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEecch---HHHHHHHHHHHHHhcCCCCC-CeeeeeeccchhHHHHhcc
Confidence 2 2222 223378999999999 55554432222233333222 5666777886666666543
|
|
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.013 Score=64.06 Aligned_cols=123 Identities=14% Similarity=0.105 Sum_probs=61.7
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHH-hhcCccccccccccchHHHHHHhcCc-hhhHhhc-----ccchHHHHHHH
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVIL-AQVGADVPAEIFEISPVDRIFVRMGA-KDHIMAG-----QSTFLTELSET 1097 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~il-aq~G~~vPa~~~~l~~~d~i~~~ig~-~d~i~~~-----~Stf~~e~~~~ 1097 (1288)
..|.++.|+||+|+||||+..+++..... .+...|+..+. +. .+++...... .+..... ...+......+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~--~~-~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG--LS-PERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CC-HHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 56899999999999999999888753322 22335555543 11 1222221110 0111000 01111111112
Q ss_pred HHHHHhC--CCCcEEEEeCCCCCCChH---H---HH-HHH--HHHHHHHHhccCcEEEEEcCCc
Q 000778 1098 ALMLSSA--TRNSLVVLDELGRGTSTS---D---GQ-AIA--ESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1098 ~~il~~a--~~~sLvLLDEpg~GTs~~---D---g~-aia--~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
..+...+ ..+++|++|-...=.... + .. .+. ...|..++++.++++|++.|-.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~ 150 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVY 150 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccE
Confidence 2222222 378999999984211100 0 01 111 1235556667799999998854
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.004 Score=71.77 Aligned_cols=84 Identities=21% Similarity=0.383 Sum_probs=48.8
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHh---hcCccccccccccchHHHHHH--h-cCchhhHhhcccchHHHHHHHHH
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILA---QVGADVPAEIFEISPVDRIFV--R-MGAKDHIMAGQSTFLTELSETAL 1099 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ila---q~G~~vPa~~~~l~~~d~i~~--~-ig~~d~i~~~~Stf~~e~~~~~~ 1099 (1288)
.+.+++|+||+|+||||++..++...... ...+++.++..+.+..+++.. + +|..-... . .-..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~----~---~~~~l~~ 265 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVA----R---DPKELRK 265 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceecc----C---CHHHHHH
Confidence 46799999999999999999888544322 223455655544444443322 1 12110000 0 1123344
Q ss_pred HHHhCCCCcEEEEeCCC
Q 000778 1100 MLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1100 il~~a~~~sLvLLDEpg 1116 (1288)
++..+...++||+|.+|
T Consensus 266 ~l~~~~~~d~vliDt~G 282 (282)
T TIGR03499 266 ALDRLRDKDLILIDTAG 282 (282)
T ss_pred HHHHccCCCEEEEeCCC
Confidence 45555678999999985
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.011 Score=71.37 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCChhHHHhhhhh
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~ 1049 (1288)
+.-++|.||+|+|||++.|.++.
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999985
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0042 Score=84.99 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.2
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhH
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLA 1050 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i 1050 (1288)
..+++++|+||+|.|||||+|.++.-
T Consensus 205 ~~~~vvgI~G~gGiGKTTLA~~l~~~ 230 (1153)
T PLN03210 205 EEVRMVGIWGSSGIGKTTIARALFSR 230 (1153)
T ss_pred CceEEEEEEcCCCCchHHHHHHHHHH
Confidence 46789999999999999999999753
|
syringae 6; Provisional |
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0082 Score=60.61 Aligned_cols=99 Identities=22% Similarity=0.294 Sum_probs=54.4
Q ss_pred CcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHh-CC
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSS-AT 1105 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~-a~ 1105 (1288)
+++++|+||-|+||||++++++.-.+...-..|+... +.-+......+ + ...++.. ..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~-------~~~~~~~~~~~--------~------~~~~~~~~~~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFD-------DPRDRRLADPD--------L------LEYFLELIKP 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccC-------CHHHHHHhhhh--------h------HHHHHHhhcc
Confidence 4789999999999999999998432211111222211 11110000000 0 1111221 13
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcc-CcEEEEEcCCchhh
Q 000778 1106 RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKV-QCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1106 ~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~-~~~vl~~TH~~~l~ 1153 (1288)
...+|+|||. ....+ ....++.+.+.. ++.+++++......
T Consensus 61 ~~~~i~iDEi---q~~~~----~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 61 GKKYIFIDEI---QYLPD----WEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred CCcEEEEehh---hhhcc----HHHHHHHHHHhccCceEEEEccchHHH
Confidence 7899999999 33332 234555665543 57888888876554
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0011 Score=79.86 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=29.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHh
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLR 1045 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr 1045 (1288)
..++.+|++.+ .+|++++|+||+|||||||||
T Consensus 19 ~~vL~~Vsl~i-~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 19 ERILVKFNKEL-PSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHhCCceee-cCCCEEEEECCCCCCHHHHHh
Confidence 36789999998 789999999999999999999
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.01 Score=65.93 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=62.5
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHHh-hcCccccccccccchHHHHHHhcCchhhHhhcc---cchH-HHHHH-HH
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILA-QVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQ---STFL-TELSE-TA 1098 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ila-q~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~---Stf~-~e~~~-~~ 1098 (1288)
..|.++.|+||.|+||||+..+++.-.... ....|+-.+......+.++... . .+.+.... ..+. .++.+ +.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGE-D-FEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhh-C-hHhHhhCeEEEeCCCHHHHHHHHH
Confidence 568999999999999999999987543322 2335555541111112222211 0 01111110 0011 12211 11
Q ss_pred HHHHhC-CCCcEEEEeCCCCCCCh-----HH----HHHHHH--HHHHHHHhccCcEEEEEcCCc
Q 000778 1099 LMLSSA-TRNSLVVLDELGRGTST-----SD----GQAIAE--SVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1099 ~il~~a-~~~sLvLLDEpg~GTs~-----~D----g~aia~--aile~l~~~~~~~vl~~TH~~ 1150 (1288)
.+...+ .++++|++|-+.+=... .+ ...+.. ..|..++++.++++|++.|-.
T Consensus 99 ~~~~~~~~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~ 162 (225)
T PRK09361 99 KAEKLAKENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVY 162 (225)
T ss_pred HHHHHHHhcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccce
Confidence 222111 68999999998321111 11 111221 224555667799999998854
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0044 Score=83.93 Aligned_cols=79 Identities=13% Similarity=-0.018 Sum_probs=57.0
Q ss_pred hcccchHHHHHH-HHHHHHhCC----------CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1085 AGQSTFLTELSE-TALMLSSAT----------RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1085 ~~~Stf~~e~~~-~~~il~~a~----------~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
....++++++.. ++.+++++. +|.+||||||+.|.|+..... +..+|..+.. .|++|+++||+.++.
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~-~~~~l~~l~~-~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDR-AIGILDAIRE-GSKMIGIISHVPEFR 1023 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHH-HHHHHHHHHh-CCCEEEEEeCcHHHH
Confidence 445677766643 444444332 799999999988888875544 4467777865 588999999999999
Q ss_pred hhhcCCCceEEeee
Q 000778 1154 VDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1154 ~~~~~~~~v~~~~~ 1167 (1288)
..+++ +|.++..
T Consensus 1024 ~~~~~--~i~v~~~ 1035 (1042)
T TIGR00618 1024 ERIPH--RILVKKT 1035 (1042)
T ss_pred HhhCC--EEEEEEC
Confidence 99888 6655543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0097 Score=74.62 Aligned_cols=119 Identities=21% Similarity=0.176 Sum_probs=62.0
Q ss_pred CcEEEEEecCCCChhHHHhhhhhHHHHhhcCccc-ccc-ccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhC
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV-PAE-IFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSA 1104 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~v-Pa~-~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a 1104 (1288)
...++|+||.||||||+++.++... ...|..| --+ ...+.+-.. ...+ ......+..++..+ +.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i--~~~~riV~TiEDp~El~~~~~-i~q~----------~~~~~~~~~~~~~l-LR 322 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFY--ADMGKIVKTMESPRDLQVPPE-ITQY----------SKLEGSMEETADIL-LL 322 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH--hhCCCEEEEECCCccccCCCc-ceEE----------eeccccHHHHHHHH-Hh
Confidence 4558999999999999999988533 2333332 111 011111000 0000 00001122222222 45
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcC---------------CchhhhhhcCCCceEEeeeEE
Q 000778 1105 TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTH---------------YHRLAVDYKKDPRVSLCHMAC 1169 (1288)
Q Consensus 1105 ~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH---------------~~~l~~~~~~~~~v~~~~~~~ 1169 (1288)
.+|+++|+||+ || ..+ +.++..+.. .|..++.+.| ++..+....+ .|+.++.|.
T Consensus 323 ~rPD~IivGEi-Rd--~Et-----~~~~~~l~~-ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID--~IV~I~~G~ 391 (602)
T PRK13764 323 VRPDYTIYDEM-RK--TED-----FKIFADMRL-AGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVD--TVIFIEDGE 391 (602)
T ss_pred hCCCEEEECCC-CC--HHH-----HHHHHHHHH-cCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhc--EEEEEeCCE
Confidence 78999999999 23 322 222333322 2556777888 4444444455 677777776
Q ss_pred E
Q 000778 1170 Q 1170 (1288)
Q Consensus 1170 ~ 1170 (1288)
+
T Consensus 392 I 392 (602)
T PRK13764 392 V 392 (602)
T ss_pred E
Confidence 6
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1288 | ||||
| 2o8b_B | 1022 | Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T M | 0.0 | ||
| 3thw_B | 918 | Human Mutsbeta Complexed With An Idl Of 4 Bases (Lo | 1e-86 | ||
| 1wbd_A | 800 | Crystal Structure Of E. Coli Dna Mismatch Repair En | 5e-57 | ||
| 1oh5_A | 800 | The Crystal Structure Of E. Coli Muts Binding To Dn | 5e-57 | ||
| 1wbb_A | 800 | Crystal Structure Of E. Coli Dna Mismatch Repair En | 5e-57 | ||
| 1wb9_A | 800 | Crystal Structure Of E. Coli Dna Mismatch Repair En | 5e-57 | ||
| 3k0s_A | 799 | Crystal Structure Of E.Coli Dna Mismatch Repair Pro | 2e-56 | ||
| 1ng9_A | 800 | E.Coli Muts R697a: An Atpase-Asymmetry Mutant Lengt | 3e-56 | ||
| 2o8b_A | 934 | Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T M | 9e-54 | ||
| 2o8e_A | 934 | Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, | 1e-53 | ||
| 1nne_A | 765 | Crystal Structure Of The Muts-adpbef3-dna Complex L | 3e-53 | ||
| 1e3m_A | 800 | The Crystal Structure Of E. Coli Muts Binding To Dn | 2e-52 | ||
| 1ewr_A | 649 | Crystal Structure Of Taq Muts Length = 649 | 1e-49 | ||
| 1ewq_A | 765 | Crystal Structure Taq Muts Complexed With A Heterod | 2e-49 | ||
| 1fw6_A | 768 | Crystal Structure Of A Taq Muts-Dna-Adp Ternary Com | 3e-49 |
| >pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR Length = 1022 | Back alignment and structure |
|
| >pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4) And Adp Length = 918 | Back alignment and structure |
|
| >pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38q Mutant, In Complex With A G.T Mismatch Length = 800 | Back alignment and structure |
|
| >pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A C:a Mismatch Length = 800 | Back alignment and structure |
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| >pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38a Mutant, In Complex With A G.T Mismatch Length = 800 | Back alignment and structure |
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| >pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38t Mutant, In Complex With A G.T Mismatch Length = 800 | Back alignment and structure |
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| >pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein Muts, D693n Mutant, In Complex With Gt Mismatched Dna Length = 799 | Back alignment and structure |
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| >pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant Length = 800 | Back alignment and structure |
|
| >pdb|2O8B|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR Length = 934 | Back alignment and structure |
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| >pdb|2O8E|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH ADP BOUND TO Msh2 Only Length = 934 | Back alignment and structure |
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| >pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex Length = 765 | Back alignment and structure |
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| >pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A G:t Mismatch Length = 800 | Back alignment and structure |
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| >pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts Length = 649 | Back alignment and structure |
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| >pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex Dna At 2.2 A Resolution Length = 765 | Back alignment and structure |
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| >pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex Length = 768 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* Length = 1022 | Back alignment and structure |
|---|
Score = 1036 bits (2682), Expect = 0.0
Identities = 384/1015 (37%), Positives = 559/1015 (55%), Gaps = 50/1015 (4%)
Query: 278 GDVSERFSAREADKFHFLGPD-RRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWE 336
GD S R + + +L + RRD RRRP +D TLY+P DFL + + G ++WW+
Sbjct: 18 GDDSSRPTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQ 77
Query: 337 FKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLAR 396
KS++ D VI +K+GKFYEL+ MDA +G EL L +MKG H GFPE F + L +
Sbjct: 78 IKSQNFDLVICYKVGKFYELYHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQ 137
Query: 397 KGYRVLVVEQTETPEQLELRRKEKGS---KDKVVKREICAVVTKGTLTEGELLSANPDAS 453
KGY+V VEQTETPE +E R ++ D+VV+REIC ++TKGT T L + +
Sbjct: 138 KGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSE-N 196
Query: 454 YLMAL-TESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEI 512
Y L + + S R +G+C VD + + +GQ DD CS L++ PV++
Sbjct: 197 YSKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQV 256
Query: 513 IKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADS 572
+ LS ET+ + L L+P S+FWDA T+ + E + S
Sbjct: 257 LFEKGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLE------EEYFREKLS 310
Query: 573 NVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFEL 632
+ S ++ G+ LSALGG +FYLKK +D+ LL A FE
Sbjct: 311 DGIGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEE 370
Query: 633 LPCSGFGDMAKKP----------YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTA 682
++ MVLDA L NLE+F N +G + GTL +++ C T
Sbjct: 371 YIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTP 430
Query: 683 FGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFA 742
FGKRLL+ WL PL N I +R DA+ L E + L +LPD+ERLL+++
Sbjct: 431 FGKRLLKQWLCAPLCNHYAINDRLDAIEDLMV-VPDKISEVVELLKKLPDLERLLSKIHN 489
Query: 743 SSEA---NGRNSNKVVLYEDAA--KKQLQEFISALHGCELMDQACSSLGAILENTESRQL 797
++ ++YE+ KK++ +F+SAL G ++M + + + + +S+ L
Sbjct: 490 VGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKIL 549
Query: 798 HHILT-----PGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEI 852
+++ P P + L + AFD +A +G I P G D DYD A ++E
Sbjct: 550 KQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIREN 609
Query: 853 EASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRG-SVPRDYELRSSKKGFFRYW 911
E SL ++L++QR +G +I Y IG++ Y LE+PE+ ++P +YEL+S+KKG RYW
Sbjct: 610 EQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYW 669
Query: 912 TPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIAS 971
T I+K L L AE ++ +LK ++RL F +++ W+ V A LD L+ LA S
Sbjct: 670 TKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYS 729
Query: 972 DFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGG------HG 1025
+GP CRPVIL + P++ K HP + + + +F+PNDI IG +G
Sbjct: 730 RGGDGPMCRPVILLP-EDTPPFLELKGSRHPCI-TKTFFGDDFIPNDILIGCEEEEQENG 787
Query: 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMA 1085
A +L+TGPNMGGKSTL+RQ L ++AQ+G VPAE+ ++P+DR+F R+GA D IM+
Sbjct: 788 KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMS 847
Query: 1086 GQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLF 1145
G+STF ELSETA +L AT +SLV++DELGRGT+T DG AIA +V++ ++CR LF
Sbjct: 848 GESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLF 907
Query: 1146 STHYHRLAVDYKKDPRVSLCHMACQVGNGVGGV--EEVTFLYRLSPGACPKSYGVNVARL 1203
STHYH L DY ++ V L HMAC V N E +TFLY+ GACPKSYG N ARL
Sbjct: 908 STHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARL 967
Query: 1204 AGIPDKVLQKAVAKSTEFEA------IYGKHKKESEENLPADHCVDHMVVLIQSL 1252
A +P++V+QK K+ EFE ++ + SE + V ++ LI+ L
Sbjct: 968 ANLPEEVIQKGHRKAREFEKMNQSLRLFREVCLASERSTVDAEAVHKLLTLIKEL 1022
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Length = 918 | Back alignment and structure |
|---|
Score = 653 bits (1687), Expect = 0.0
Identities = 251/941 (26%), Positives = 425/941 (45%), Gaps = 106/941 (11%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDL-QYMKGEQPHCGFPERNFSMN 390
Q+ E K +H D V+ + G Y F DA + A+EL++ ++ P ++
Sbjct: 18 LQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVH 77
Query: 391 VEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTE-------- 442
V +L KGY+V VV+QTET + + R++ A+ TK TL
Sbjct: 78 VRRLVAKGYKVGVVKQTETAALKAIGDNRSS----LFSRKLTALYTKSTLIGEDVNPLIK 133
Query: 443 -------GELLSANPDASYLMALTES-NQSPASQSTDRCFGICVVDVATSRIILGQVMDD 494
E+++ SYL+ ++E+ + + GI V AT ++ D
Sbjct: 134 LDDAVNVDEIMTDTST-SYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDSFQDS 192
Query: 495 LDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLS----EFWDAET 550
S L +S L+PVE++ P+ LS +TE I R T + +D + + +++
Sbjct: 193 ASRSELETRMSSLQPVELLLPSA-LSEQTEALIHRATSVSVQDDRIRVERMDNIYFEYSH 251
Query: 551 TVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGG 610
+ Y + T + G + GI++ V+ +L
Sbjct: 252 AFQAVTEFYAKDTVD---------------IKGSQIISGIVNL-------EKPVICSLAA 289
Query: 611 TLFYLK---KSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGD 667
+ YLK + F + +K +M ++ L NLE+ +N
Sbjct: 290 IIKYLKEFNLEKMLSKPENFKQLS----------SKMEFMTINGTTLRNLEILQNQTDMK 339
Query: 668 SSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKAL 727
+ G+L L+H T+FG+R L+ W+ +PL I R DAV+ + + L
Sbjct: 340 TKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHL 399
Query: 728 SRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSL-G 786
+LPD+ER L ++ + + EF + + ++
Sbjct: 400 RKLPDIERGLCSIYHKK-CSTQ-----------------EFFLIVKTLYHLKSEFQAIIP 441
Query: 787 AILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEA--NNSGRIIPHGGVDMDYDS 844
A+ + +S L ++ +P ++S ++H+ + A + +
Sbjct: 442 AVNSHIQSDLLRTVILE---IPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKK 498
Query: 845 ACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSK 904
+++ + + HL+E RK+L + S YVT+ +++E+ S +P D+ S
Sbjct: 499 RKDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGST 558
Query: 905 KGFFRYWTPNIKKLLGELSQAESEKESAL-KSILQRLIGQFCEHHNKWRQMVAATAELDA 963
K R+ +P I + L+Q E+ + + +F EH++ + V A +D
Sbjct: 559 KAVSRFHSPFIVENYRHLNQLR-EQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDC 617
Query: 964 LISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGG 1023
+ SLA + +G CRP + EE I K+ HPV+ + ++VPN+ +
Sbjct: 618 IFSLAKVAK--QGDYCRPTV-----QEERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSE 670
Query: 1024 HGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHI 1083
+++TGPNMGGKS+ ++QV L I+AQ+G+ VPAE I VD IF RMGA D+I
Sbjct: 671 DSE-RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNI 729
Query: 1084 MAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRG 1143
G+STF+ EL++TA ++ AT SLV+LDELGRGTST DG AIA + LE+F+ V+
Sbjct: 730 YKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLT 789
Query: 1144 LFSTHYHRLA-VDYKKDPRVSLCHMACQVGNGVGGV---------EEVTFLYRLSPGACP 1193
LF THY + ++ +V HM V + + VTFLY+++ G
Sbjct: 790 LFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAA 849
Query: 1194 KSYGVNVARLAGIPDKVLQKAVAKSTEFEAIYGKHKKESEE 1234
+SYG+NVA+LA +P ++L+KA KS E E + +K +
Sbjct: 850 RSYGLNVAKLADVPGEILKKAAHKSKELEGLINTKRKRLKY 890
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* Length = 934 | Back alignment and structure |
|---|
Score = 514 bits (1327), Expect = e-164
Identities = 213/930 (22%), Positives = 376/930 (40%), Gaps = 113/930 (12%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELD-----LQYMKGEQ----PHCGF 382
+ + K V F G FY DA + A+E+ ++YM
Sbjct: 21 RFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVL 80
Query: 383 PERNFSMNVEK-LARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLT 441
+ NF V+ L + YRV V + + K + + G L+
Sbjct: 81 SKMNFESFVKDLLLVRQYRVEVYKNRAGNKA-----------SKENDWYLAYKASPGNLS 129
Query: 442 EGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLC 501
+ E + + ++ ++ R G+ VD ++ L + D+ S L
Sbjct: 130 QFEDILFGNN-DMSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLE 188
Query: 502 CLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNR 561
LL ++ P E + P + + + R ++ ++F K+IY
Sbjct: 189 ALLIQIGPKECVLPGGETAGDMGKLRQIIQRGGILITERKKADF--------STKDIYQD 240
Query: 562 ITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLD 621
+ + + E LP + +++ +S+L + +L+
Sbjct: 241 LNRL--------LKGKKGEQMNSAVLPEMENQV---------AVSSLSAVIKFLE----- 278
Query: 622 ETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENS-RSGDSSGTLYAQLNHCV 680
+ YM LD A+ L +F+ S S +L A LN C
Sbjct: 279 LL----SDDSNFGQFELTTFDFSQYMKLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCK 334
Query: 681 TAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEF--RKALSRLPDMERLLA 738
T G+RL+ W+ +PL + I ER + V V + L R PD+ RL
Sbjct: 335 TPQGQRLVNQWIKQPLMDKNRIEERLNLVEAF--VEDAELRQTLQEDLLRRFPDLNRLAK 392
Query: 739 RLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLH 798
+ F AN ++ Y +L + I+ L ++ LE E +
Sbjct: 393 K-FQRQAANLQD-----CY------RLYQGINQL----------PNVIQALEKHEGKHQK 430
Query: 799 HILTP-GKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGV-DMDYDSACKKVKEIEASL 856
+L L + S F++ + + ++ H + +D +++EI L
Sbjct: 431 LLLAVFVTPLTDLRSDFSKFQEMIE--TTLDMDQVENHEFLVKPSFDPNLSELREIMNDL 488
Query: 857 TKHLKE-QRKLLGDTSITYVTIGKDL---------YLLEVPESLRGSV--PRDYELRSSK 904
K ++ D + GK + Y V + +++ +
Sbjct: 489 EKKMQSTLISAARDLGLD---PGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQ 545
Query: 905 KGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDAL 964
K ++ + L E ++ ++E E A +I++ ++ + + + A+LDA+
Sbjct: 546 KNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAV 605
Query: 965 ISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGH 1024
+S A S+ P RP IL+ + I K+ H + + + F+PND+
Sbjct: 606 VSFAHVSNGAPVPYVRPAILEK---GQGRIILKASRHACV--EVQDEIAFIPNDVYFE-K 659
Query: 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIM 1084
F ++TGPNMGGKST +RQ + V++AQ+G VP E E+S VD I R+GA D +
Sbjct: 660 DKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQL 719
Query: 1085 AGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGL 1144
G STF+ E+ ETA +L SAT++SL+++DELGRGTST DG +A ++ E+ K+ +
Sbjct: 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCM 779
Query: 1145 FSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLA 1204
F+TH+H L + P V+ H+ +T LY++ G C +S+G++VA LA
Sbjct: 780 FATHFHELTALANQIPTVNNLHVTALTTEE-----TLTMLYQVKKGVCDQSFGIHVAELA 834
Query: 1205 GIPDKVLQKAVAKSTEFEAIYGKHKKESEE 1234
P V++ A K+ E E + + +
Sbjct: 835 NFPKHVIECAKQKALELEEFQYIGESQGYD 864
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* Length = 800 | Back alignment and structure |
|---|
Score = 295 bits (757), Expect = 3e-85
Identities = 115/343 (33%), Positives = 185/343 (53%), Gaps = 18/343 (5%)
Query: 882 YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESAL-KSILQRL 940
Y +++ P +Y R + K RY P +K+ ++ ++ K AL K + + L
Sbjct: 473 YYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSK-GKALALEKQLYEEL 531
Query: 941 IGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLG 1000
H +Q +A AELD L++LA + P ++P I
Sbjct: 532 FDLLLPHLEALQQSASALAELDVLVNLAERAYTLN--YTCPTF-----IDKPGIRITEGR 584
Query: 1001 HPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060
HPV+ + + F+ N + + +++TGPNMGGKST +RQ L ++A +G+ V
Sbjct: 585 HPVV--EQVLNEPFIANPLNLSP--QRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYV 640
Query: 1061 PAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTS 1120
PA+ EI P+DRIF R+GA D + +G+STF+ E++ETA +L +AT SLV++DE+GRGTS
Sbjct: 641 PAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTS 700
Query: 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEE 1180
T DG ++A + E+ +K++ LF+THY L +K V+ H+
Sbjct: 701 TYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGD-----T 755
Query: 1181 VTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEA 1223
+ F++ + GA KSYG+ VA LAG+P +V+++A K E E+
Sbjct: 756 IAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES 798
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* Length = 800 | Back alignment and structure |
|---|
Score = 213 bits (546), Expect = 1e-57
Identities = 96/471 (20%), Positives = 177/471 (37%), Gaps = 96/471 (20%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDL------QYMKGEQPHCGFPER 385
+Q+ K++H + ++F++MG FY LF DA ++ LD+ P G P
Sbjct: 15 QQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYH 74
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ KL +G V + EQ P SK V+R++ +VT GT+++ L
Sbjct: 75 AVENYLAKLVNQGESVAICEQIGDP---------ATSK-GPVERKVVRIVTPGTISDEAL 124
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L D + L A+ + ++ FG +D+++ R ++ + D + L
Sbjct: 125 LQERQD-NLLAAIWQDSKG---------FGYATLDISSGRF---RLSEPADRETMAAELQ 171
Query: 506 ELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAE 565
P E++ + R PL EF + +T ++ +
Sbjct: 172 RTNPAELLYAEDFAEMSLIEGRRGLRR-------RPLWEF-EIDTARQQLNLQFGTRDLV 223
Query: 566 SLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLL 625
++ L A G L Y K +T
Sbjct: 224 GFGVENAPRG-----------------------------LCAAGCLLQYAK-----DTQ- 248
Query: 626 RFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGK 685
+ L ++ +++DA NLE+ +N G + TL + L+ VT G
Sbjct: 249 ---RTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLA-GGAENTLASVLDCTVTPMGS 304
Query: 686 RLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSE 745
R+L+ WL P+ ++ ++ ERQ + L+ + L ++ D+ER+LARL A
Sbjct: 305 RMLKRWLHMPVRDTRVLLERQQTIGALQDFTA----GLQPVLRQVGDLERILARL-ALRT 359
Query: 746 ANGR------NSNKVV-----LYEDAAKKQLQEFISALHGC----ELMDQA 781
A R ++ + + E +Q + +L+++A
Sbjct: 360 ARPRDLARMRHAFQQLPELRAQLETVDSAPVQALREKMGEFAELRDLLERA 410
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* Length = 765 | Back alignment and structure |
|---|
Score = 292 bits (749), Expect = 2e-84
Identities = 124/347 (35%), Positives = 176/347 (50%), Gaps = 35/347 (10%)
Query: 882 YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESAL-KSILQRL 940
Y LEV VP++Y + K RY P +K+ E+ + E + + +
Sbjct: 448 YYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPEMKEKEREVYRLE-ALIRRREEEVFLEV 506
Query: 941 IGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLG 1000
+ R+ AELD +LA + Y RP + I A G
Sbjct: 507 RERAKRQAEALREAARILAELDVYAALAEVAVRYG--YVRPRF-----GDRLQIRA---G 556
Query: 1001 -HPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059
HPV+ + EFVPND+ + +L+TGPNM GKST LRQ L +LAQVG+
Sbjct: 557 RHPVVER----RTEFVPNDLEMAHE----LVLITGPNMAGKSTFLRQTALIALLAQVGSF 608
Query: 1060 VPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGT 1119
VPAE + D I+ R+GA D + G+STF+ E+ E AL+L AT NSLV+LDE+GRGT
Sbjct: 609 VPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668
Query: 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYH---RLAVDYKKDPRVSLCHMACQVGNGVG 1176
S+ DG AIA +V E +H+ + LF+THY L + PR+ H+A + G
Sbjct: 669 SSLDGVAIATAVAEA-LHERRAYTLFATHYFELTALGL-----PRLKNLHVAAREEAG-- 720
Query: 1177 GVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEA 1223
+ F +++ PG KSYGV VA +AG+P +V+ +A A A
Sbjct: 721 ---GLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAMAA 764
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* Length = 765 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 6e-56
Identities = 100/423 (23%), Positives = 154/423 (36%), Gaps = 98/423 (23%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDL---QYMKGEQ--PHCGFPERN 386
+Q+ E + ++ D ++ F++G FYE F DA A+ L L + P G P R
Sbjct: 18 QQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPLRA 77
Query: 387 FSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELL 446
F E+L + G+R+ V +Q E + ++ +V+RE+ ++T GTL + LL
Sbjct: 78 FEAYAERLLKMGFRLAVADQVEPA---------EEAE-GLVRREVTQLLTPGTLLQESLL 127
Query: 447 SANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSE 506
+A+YL A+ + +G+ +DV+T + S L L
Sbjct: 128 PR--EANYLAAIATGDG----------WGLAFLDVSTGEFKGTVLKSK---SALYDELFR 172
Query: 507 LRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAES 566
RP E++ +L R K ++
Sbjct: 173 HRPAEVLLAPELLENGAFLDEFR--------------------------KRFPVMLSEAP 206
Query: 567 LNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLR 626
E +G L A G L Y + T
Sbjct: 207 F------------EPEGEGPLALR---------------RARGALLAYAQ-----RTQGG 234
Query: 627 FAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKR 686
L F +M L L LEVFE R TL++ L+ TA G+R
Sbjct: 235 -----ALSLQPFRFYDPGAFMRLPEATLRALEVFEPLRGQ---DTLFSVLDETRTAPGRR 286
Query: 687 LLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEA 746
LL++WL PL + G + R D V G R+ L RL D+ERL RL A
Sbjct: 287 LLQSWLRHPLLDRGPLEARLDRVEGFVR-EGALREGVRRLLYRLADLERLATRL-ELGRA 344
Query: 747 NGR 749
+ +
Sbjct: 345 SPK 347
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 7e-13
Identities = 66/511 (12%), Positives = 138/511 (27%), Gaps = 146/511 (28%)
Query: 10 GRSPLV----NPQRQITSFFSK------SNSPSPSPTISKLNPNKSNSNPNPNPNSNSNR 59
G++ + + K N SP + L + N
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ--------KLLYQIDPNW 213
Query: 60 TPSPSPSPTTPSPLQS-NPKKSRLVIGQTPSPPPSTPAAAKSYGEDVLRKRIRVYWPLDK 118
T S + S + RL+ +K Y +L + L
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLL-------------KSKPYENCLL---V-----LLN 252
Query: 119 AWYEGCVKSFDKECNKHLVQYDDGE--DELLDLGKEKIEWVQESVSLLKRLRRDSFKKVV 176
+F+ C K L+ + D L I S++L + K +
Sbjct: 253 VQNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 177 ---VEDD-EEMENVE--------DEISDDRSDSSDDDWNKNVGKEDVSEDEEVDLVDEQE 224
+D E+ + I D + D+W K+V + ++ E L + E
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATW--DNW-KHVNCDKLTTIIESSL-NVLE 367
Query: 225 NKVLRGRKRKSSGVKKSKSDGNAVNADFKSPIIKP--VKIFGSDKLSNGFDNP--VM--- 277
R F + P I P ++
Sbjct: 368 PAEYRKM--------------------FDRLSVFPPSAHI------------PTILLSLI 395
Query: 278 -GDVSERFSAREADKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQK---- 332
DV + +K H +++ P ++YL + L
Sbjct: 396 WFDVIKSDVMVVVNKLH----KYSLVEKQPKESTISIP-SIYL--ELKVKLENEYALHRS 448
Query: 333 -----------QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKE-----LDLQYMKGE 376
+ ++D+ + +G + L ++ LD ++++ +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIG--HHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 377 QPHCGFPERNFSMNVEKLAR-KGYRVLVVEQTETPEQLE------LRRKEKGSKDKVVKR 429
H + L + K Y+ + + E+L L + E + ++
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE----ENLICS 562
Query: 430 EICAVVTKGTLTEGELLSANPDASYLMALTE 460
+ ++ + E E + + A +
Sbjct: 563 KYTDLLRIALMAEDEAI-------FEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 1e-10
Identities = 104/664 (15%), Positives = 195/664 (29%), Gaps = 203/664 (30%)
Query: 424 DKVVKREICAVV---TKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVD 480
D V C V K L++ E+ D A T R F ++
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEI-----DHII-------MSKDAVSGTLRLFW-TLLS 73
Query: 481 VATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLV 540
++ + ++++ L+S ++ E +P S T I R+ L ND
Sbjct: 74 KQEE--MVQKFVEEVLRINYKFLMSPIK-TEQRQP----SMMTRMYI--EQRDRLYNDNQ 124
Query: 541 PLSEF--WDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTG 598
+++ + L+++ L A + + + G G T + L +S
Sbjct: 125 VFAKYNVSRLQ-PYLKLRQ-----ALLELRPAKNVLIDGVL-GSGKTWV--ALDVCLSYK 175
Query: 599 DSGSQVLSALGGTLFYLK--KSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALEN 656
V + +F+L ET+L +M +K +D
Sbjct: 176 -----VQCKMDFKIFWLNLKNCNSPETVL--------------EMLQKLLYQIDPNWTSR 216
Query: 657 LEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLI-------------- 702
+ N + S + LR L Y + L+
Sbjct: 217 SDHSSNIKLRIHS--------------IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 703 ----------RERQ--DAVAGLR-----------GVNQPFALE-FRKAL----SRLPDME 734
R +Q D ++ + K L LP
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 735 R----LLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILE 790
+ A S +G + ++ +L I SSL +LE
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWD--NWKHVNCDKLTTIIE------------SSL-NVLE 367
Query: 791 NTESRQLHH---ILTPGKGLPAIV-SILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSAC 846
E R++ + P +P I+ S++ W + + V + +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLI--------WFD-------VIKSDVMVVVNKLH 412
Query: 847 KKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSS--- 903
K SL +++Q K +++I+ +YL L+ + +Y L S
Sbjct: 413 KY------SL---VEKQPK---ESTISI----PSIYL-----ELKVKLENEYALHRSIVD 451
Query: 904 ----KKGFFRYWTPNIKKL-------LG-ELSQAE-SEKESALKSILQRLIGQFCEHHNK 950
K F L +G L E E+ + + + +F E K
Sbjct: 452 HYNIPKTFD-SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF--RFLE--QK 506
Query: 951 WRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISA-----KSLGHPVLR 1005
R A ++++ FY +P I D+ E ++A + ++
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFY-----KPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 1006 SDSL 1009
S
Sbjct: 562 SKYT 565
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 4e-10
Identities = 56/409 (13%), Positives = 120/409 (29%), Gaps = 154/409 (37%)
Query: 791 NTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVK 850
+ E+ + + IL F+DAF V+ ++D CK V+
Sbjct: 8 DFETGEHQY---------QYKDILSVFEDAF--VD---------------NFD--CKDVQ 39
Query: 851 EIEAS-LTKHLKEQRKLLG---DTSITYVTIGKDLYLLEVPES-----LRGSVPRDYELR 901
++ S L+K +E ++ S T LL E + + +Y+
Sbjct: 40 DMPKSILSK--EEIDHIIMSKDAVSGTLRLFWT---LLSKQEEMVQKFVEEVLRINYK-- 92
Query: 902 SSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNK-WRQMVAATAE 960
+ L + E + S + + + E ++ +
Sbjct: 93 ---------F-------LMSPIKTEQRQPSMMTRM-------YIEQRDRLYND------- 122
Query: 961 LDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDIT 1020
F + R +PY+ + L K +
Sbjct: 123 ---------NQVFAKYNVSRL---------QPYLKLRQ----ALLELRPAKN------VL 154
Query: 1021 IGGHGNASFILLTGPNMGG--KSTLLRQVCLAVILAQVGADVPAEIFEIS---------- 1068
I G + G K+ + VCL+ +V + +IF ++
Sbjct: 155 I--DG-----------VLGSGKTWVALDVCLS---YKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 1069 --PVDRIFVRMGAKDHIMAGQSTFLTELSETA------LMLSSATRNSLVVLDELGRGTS 1120
+ ++ ++ + S+ + + L+ S N L+VL +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV----- 253
Query: 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA--VDYKKDPRVSLCHM 1167
+ + F + C+ L +T + ++ + +SL H
Sbjct: 254 -QNAK-----AWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 1e-09
Identities = 69/483 (14%), Positives = 137/483 (28%), Gaps = 127/483 (26%)
Query: 757 YEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHIL---TPGKGLPAIVSI 813
Y+D F+ ++ D +IL E + HI+ G +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQD----MPKSILSKEE---IDHIIMSKDAVSGTLRLFWT 70
Query: 814 L--------KHF-----KDAFDWV-EANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKH 859
L + F + + ++ + + P M Y ++ K+
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM-YIEQRDRLYNDNQVFAKY 129
Query: 860 --------LKEQRKLLGDTSITYVTI------GKDLYLLEVPESLRGSVPRDYELRSSKK 905
LK ++ LL V I GK + V Y+++ K
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK--------TWVALDVCLSYKVQC-KM 180
Query: 906 GFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQF-CEHHNKWRQMVAATAELDAL 964
F +W L+ + +LQ+L+ Q ++ + ++
Sbjct: 181 DFKIFW----------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 965 ---ISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVL---RSDSLGKGEFVPND 1018
+ + S Y C ++L + N + +A +L +L R +
Sbjct: 231 QAELRRLLKSKPY--ENCL-LVLLNVQNAK-AWNAFNLSCKILLTTRFKQV--------- 277
Query: 1019 ITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRM- 1077
+ I L +M ++ + L L D+P E+ +P + +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNP---RRLSII 333
Query: 1078 GAKDHIMAGQSTF--------LTELSETAL-MLSSA-TRN---SLVVLDELGRGTSTSDG 1124
LT + E++L +L A R L V
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP---------S 384
Query: 1125 QAIAESVL------------EHFVHKVQCRGL-------FSTHYHRLAVDYKK--DPRVS 1163
I +L V+K+ L + + ++ K + +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 1164 LCH 1166
L H
Sbjct: 445 L-H 446
|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 8e-07
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 1 MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRT 60
+P + SP +P S S S SP+ SP+ S +P+ S ++P+ +P S S
Sbjct: 1584 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSP 1642
Query: 61 PSPSPSPTTPSPLQSNPKKSRLVIGQTPSPPPSTPAAAK 99
SPS SPT+PS ++P S +P+ P +P +
Sbjct: 1643 TSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1681
|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 1e-05
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 12 SPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRTPSPSPSPTTPS 71
SP +P S S S SP+ SP+ S +P+ S ++P+ +P S S SPS SPT+PS
Sbjct: 1574 SPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1632
Query: 72 PLQSNPKKSRLVIGQTPSPPPSTPAAAK 99
++P S +P+ P +P +
Sbjct: 1633 YSPTSPSYSPTSPSYSPTSPSYSPTSPA 1660
|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 4e-05
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 3 PGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRTPS 62
P + +P TS SPS SPT +P+ S ++P+ +P S S S
Sbjct: 1638 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPT----SPSYSPTSPSYSPTSPSYSPTS 1693
Query: 63 PSPSPTTPSPLQSNPKKSRLVIGQTPSPPPSTPAAAKSYGE 103
P+ SPT+PS ++P S +P+ P + E
Sbjct: 1694 PNYSPTSPSYSPTSPGYSP----GSPAYSPKQDEQKHNENE 1730
|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 2e-04
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 1 MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSP------SPTISKLNPNKSNSNPNPNPN 54
+P + SP +P S S S SP+ SP+ S +P+ S ++P+ +P
Sbjct: 1598 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1657
Query: 55 SNSNRTPSPSPSPTTPSPLQSNPKKSRLVIGQTPSPP---PSTPA 96
S + SPS SPT+PS ++P S +P+ P P++P+
Sbjct: 1658 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPS 1702
|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 4e-04
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 1 MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRT 60
+P + SP +P S S S SP+ SP+ S +PN S ++P+ +P S
Sbjct: 1654 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPTSPSYSPTSPGYSP 1712
Query: 61 PSPSPSPTTPSPLQSNPKKSR 81
SP+ SP + + SR
Sbjct: 1713 GSPAYSPKQDEQKHNENENSR 1733
|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 8e-04
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 12 SPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRTPSPSPSPTTPS 71
SP +P S S S SP SP+ S +P+ S ++P+ +P S S SPS SPT+PS
Sbjct: 1546 SPTYSPTSPAYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1604
Query: 72 PLQSNPKKSRLVIGQTPSPPPSTPAAAKSY 101
++P S +P+ P +P +
Sbjct: 1605 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1634
|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 1e-05
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 12 SPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRTPSPSPSPTTPS 71
SP +P S S S SP+ SP+ S +P+ S ++P+ +P S S SPS SPT+PS
Sbjct: 1596 SPSYSPTSPSYSATSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1654
Query: 72 PLQSNPKKSRLVIGQTPSPPPSTPAAAK 99
++P S P+ P +P +
Sbjct: 1655 YSPTSPSYS-------PTSPSYSPTSPS 1675
|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 5e-05
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 1 MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRT 60
+P + SP +P S S S SP+ P+ S ++P+ +P S S
Sbjct: 1662 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--------PSYSPTSPSYSPTSPSYSP 1713
Query: 61 PSPSPSPTTPSPLQSNPKKSRLVIGQTPSPP---PSTPA 96
SPS SPT+PS ++P S +P+ P P++P+
Sbjct: 1714 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1752
|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-04
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 12 SPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRTPSPSPSPTTPS 71
SP +P S S S SP+ SP+ S +P+ S ++P+ +P S S SPS SPT+PS
Sbjct: 1624 SPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1682
Query: 72 PLQSNPKKSRLVIGQTPSPPPSTPAA 97
++P S +P+ P +P +
Sbjct: 1683 YSPTSPSYSPTSPSYSPTSPSYSPTS 1708
|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 3e-04
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 2 APGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRTP 61
+P + SP +P S S S SP+ SP+ S +P+ S ++P+ +P S S
Sbjct: 1649 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPT 1707
Query: 62 SPSPSPTTPSPLQSNPKKSRLVIGQTPSPP---PSTPA 96
SPS SPT+PS ++P S +P+ P P++P+
Sbjct: 1708 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1745
|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 4e-04
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 12 SPLVNPQRQITSFFSKSNSP--SPSPTISKLNPNKSNSNPNPNPNSNSNRTPSPSPSPTT 69
S ++P +TS +SP S SP +P+ S ++P+ +P S S SPS SPT+
Sbjct: 1544 SSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1603
Query: 70 PSPLQSNPKKSRLVIGQTPSPPPSTP 95
PS ++P S +P+ P +P
Sbjct: 1604 PSYSATSPSYSPTSPSYSPTSPSYSP 1629
|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 6e-04
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 8 NNGRSPLVNPQRQITSFFSKSNSPSP-----SPTISKLNPNKSNSNPNPNPNSNSNRTPS 62
++ SP S S S SP SP+ S +P+ S ++P+ +P S S S
Sbjct: 1544 SSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1603
Query: 63 PSPSPTTPSPLQSNPKKSRLVIGQTPSPPPSTPAAAK 99
PS S T+PS ++P S +P+ P +P +
Sbjct: 1604 PSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1640
|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 7e-04
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 7 QNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRTPSPSPS 66
+ SP +P S S S SP+ SP+ S +P+ S ++P+ +P S S SPS S
Sbjct: 1605 SYSATSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1663
Query: 67 PTTPSPLQSNPKKSRLVIGQTPSPPPSTPAAAK 99
PT+PS ++P S +P+ P +P +
Sbjct: 1664 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1696
|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 9e-04
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 12 SPLVNPQRQITSFFSKSNSPSP------SPTISKLNPNKSNSNPNPNPNSNSNRTPSPSP 65
SP +P S S S SP+ SP+ S +P+ S ++P+ +P S S SPS
Sbjct: 1638 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1697
Query: 66 SPTTPSPLQSNPKKSRLVIGQTPSPPPSTPAA 97
SPT+PS ++P S +P+ P +P +
Sbjct: 1698 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1729
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Length = 178 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 5e-04
Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 26/158 (16%)
Query: 1030 ILLTGPNMGGKSTLLRQV------------CLAVILAQVGADVPAEIFEISPVDRIFVRM 1077
I++TG GK+TL++++ V + I +IF
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 1078 GAKDHIMAGQS--------TFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129
+ G + E A + R ++++DE+G+ S
Sbjct: 63 FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKF---R 119
Query: 1130 SVLEHFVHKVQCRGLFSTHY---HRLAVDYKKDPRVSL 1164
++ +H + + H L + ++ P L
Sbjct: 120 DLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVL 157
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1288 | ||||
| d1wb9a2 | 234 | c.37.1.12 (A:567-800) DNA repair protein MutS, the | 2e-56 | |
| d1ewqa2 | 224 | c.37.1.12 (A:542-765) DNA repair protein MutS, the | 7e-45 | |
| d1wb9a1 | 297 | a.113.1.1 (A:270-566) DNA repair protein MutS, dom | 7e-42 | |
| d1ewqa1 | 275 | a.113.1.1 (A:267-541) DNA repair protein MutS, dom | 2e-36 | |
| d1wb9a4 | 115 | d.75.2.1 (A:2-116) DNA repair protein MutS, domain | 6e-28 | |
| d1ewqa4 | 120 | d.75.2.1 (A:1-120) DNA repair protein MutS, domain | 8e-27 | |
| d1wb9a3 | 153 | c.55.6.1 (A:117-269) DNA repair protein MutS, doma | 2e-04 |
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 193 bits (490), Expect = 2e-56
Identities = 92/246 (37%), Positives = 145/246 (58%), Gaps = 14/246 (5%)
Query: 979 CRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMG 1038
P ++P I HPV+ + + F+ N + + +++TGPNMG
Sbjct: 2 TCPTF-----IDKPGIRITEGRHPVV--EQVLNEPFIANPLNLSP--QRRMLIITGPNMG 52
Query: 1039 GKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETA 1098
GKST +RQ L ++A +G+ VPA+ EI P+DRIF R+GA D + +G+STF+ E++ETA
Sbjct: 53 GKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETA 112
Query: 1099 LMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158
+L +AT SLV++DE+GRGTST DG ++A + E+ +K++ LF+THY L +K
Sbjct: 113 NILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEK 172
Query: 1159 DPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKS 1218
V+ H+ + + F++ + GA KSYG+ VA LAG+P +V+++A K
Sbjct: 173 MEGVANVHLDALEHG-----DTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKL 227
Query: 1219 TEFEAI 1224
E E+I
Sbjct: 228 RELESI 233
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Score = 159 bits (403), Expect = 7e-45
Identities = 99/245 (40%), Positives = 138/245 (56%), Gaps = 23/245 (9%)
Query: 979 CRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMG 1038
RP D + ++ HPV+ + EFVPND+ + +L+TGPNM
Sbjct: 2 VRPRFGDR-------LQIRAGRHPVVER----RTEFVPNDLEMAH----ELVLITGPNMA 46
Query: 1039 GKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETA 1098
GKST LRQ L +LAQVG+ VPAE + D I+ R+GA D + G+STF+ E+ E A
Sbjct: 47 GKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVA 106
Query: 1099 LMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158
L+L AT NSLV+LDE+GRGTS+ DG AIA +V E H+ + LF+THY +
Sbjct: 107 LILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEAL-HERRAYTLFATHYFE--LTALG 163
Query: 1159 DPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKS 1218
PR+ H+A + G + F +++ PG KSYGV VA +AG+P +V+ +A A
Sbjct: 164 LPRLKNLHVAAREEAG-----GLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALL 218
Query: 1219 TEFEA 1223
A
Sbjct: 219 QAMAA 223
|
| >d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]} Length = 297 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA repair protein MutS, domain III superfamily: DNA repair protein MutS, domain III family: DNA repair protein MutS, domain III domain: DNA repair protein MutS, domain III species: Escherichia coli [TaxId: 562]
Score = 153 bits (388), Expect = 7e-42
Identities = 72/322 (22%), Positives = 125/322 (38%), Gaps = 29/322 (9%)
Query: 650 DAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAV 709
DA NLE+ +N G + TL + L+ VT G R+L+ WL P+ ++ ++ ERQ +
Sbjct: 1 DAATRRNLEITQNLA-GGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTI 59
Query: 710 AGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFI 769
L Q F + L ++ D+ER+LARL A A R+
Sbjct: 60 GAL----QDFTAGLQPVLRQVGDLERILARL-ALRTARPRD------------------- 95
Query: 770 SALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNS 829
L Q L A LE +S + + + +L+ V +
Sbjct: 96 --LARMRHAFQQLPELRAQLETVDSAPVQALREKMGEFAELRDLLERAIIDTPPVLVRDG 153
Query: 830 GRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPES 889
G I G + + D L + +R+ G ++ Y +++
Sbjct: 154 GVIAS--GYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGFNAVHGYYIQISRG 211
Query: 890 LRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHN 949
P +Y R + K RY P +K+ ++ ++ + + K + + L H
Sbjct: 212 QSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLE 271
Query: 950 KWRQMVAATAELDALISLAIAS 971
+Q +A AELD L++LA +
Sbjct: 272 ALQQSASALAELDVLVNLAERA 293
|
| >d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III {Thermus aquaticus [TaxId: 271]} Length = 275 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA repair protein MutS, domain III superfamily: DNA repair protein MutS, domain III family: DNA repair protein MutS, domain III domain: DNA repair protein MutS, domain III species: Thermus aquaticus [TaxId: 271]
Score = 137 bits (346), Expect = 2e-36
Identities = 71/307 (23%), Positives = 111/307 (36%), Gaps = 34/307 (11%)
Query: 668 SSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKAL 727
TL++ L+ TA G+RLL++WL PL + G + R D V G R+ L
Sbjct: 2 GQDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVR-EGALREGVRRLL 60
Query: 728 SRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGA 787
RL D+ERL RL ++ L Q+ + AL G E+ S L
Sbjct: 61 YRLADLERLATRLEL------GRASPKDLGALRRSLQILPELRALLGEEVGLPDLSPLKE 114
Query: 788 ILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACK 847
LE ++ G G I G D D D+
Sbjct: 115 ELEAALVEDPPLKVSEG-------------------------GLIRE--GYDPDLDALRA 147
Query: 848 KVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGF 907
+E A + + +R+ G ++ Y LEV VP++Y + K
Sbjct: 148 AHREGVAYFLELEERERERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDR 207
Query: 908 FRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISL 967
RY P +K+ E+ + E+ + + + + R+ AELD +L
Sbjct: 208 QRYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAAL 267
Query: 968 AIASDFY 974
A + Y
Sbjct: 268 AEVAVRY 274
|
| >d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: MutS N-terminal domain-like superfamily: DNA repair protein MutS, domain I family: DNA repair protein MutS, domain I domain: DNA repair protein MutS, domain I species: Escherichia coli [TaxId: 562]
Score = 106 bits (267), Expect = 6e-28
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 16/119 (13%)
Query: 324 LRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ------ 377
+ +Q+ K++H + ++F++MG FY LF DA ++ LD+ K
Sbjct: 6 FDAHTPMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKRGASAGEPI 65
Query: 378 PHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVT 436
P G P + KL +G V + EQ P V+R++ +VT
Sbjct: 66 PMAGIPYHAVENYLAKLVNQGESVAICEQIGDPAT----------SKGPVERKVVRIVT 114
|
| >d1ewqa4 d.75.2.1 (A:1-120) DNA repair protein MutS, domain I {Thermus aquaticus [TaxId: 271]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: MutS N-terminal domain-like superfamily: DNA repair protein MutS, domain I family: DNA repair protein MutS, domain I domain: DNA repair protein MutS, domain I species: Thermus aquaticus [TaxId: 271]
Score = 104 bits (260), Expect = 8e-27
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYM-----KGEQPHCGFPERN 386
+Q+ E + ++ D ++ F++G FYE F DA A+ L L P G P R
Sbjct: 18 QQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPLRA 77
Query: 387 FSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGT 439
F E+L + G+R+ V +Q E E+ + +V+RE+ ++T GT
Sbjct: 78 FEAYAERLLKMGFRLAVADQVEPAEE----------AEGLVRREVTQLLTPGT 120
|
| >d1wb9a3 c.55.6.1 (A:117-269) DNA repair protein MutS, domain II {Escherichia coli [TaxId: 562]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: DNA repair protein MutS, domain II family: DNA repair protein MutS, domain II domain: DNA repair protein MutS, domain II species: Escherichia coli [TaxId: 562]
Score = 41.3 bits (96), Expect = 2e-04
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 438 GTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDC 497
GT+++ LL D + L A+ + ++ FG +D+++ R L + D
Sbjct: 1 GTISDEALLQERQD-NLLAAIWQDSKG---------FGYATLDISSGRFRLSEPADRETM 50
Query: 498 SVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPL 535
+ L P E++ + R PL
Sbjct: 51 AA---ELQRTNPAELLYAEDFAEMSLIEGRRGLRRRPL 85
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1288 | |||
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 100.0 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 100.0 | |
| d1wb9a1 | 297 | DNA repair protein MutS, domain III {Escherichia c | 100.0 | |
| d1ewqa1 | 275 | DNA repair protein MutS, domain III {Thermus aquat | 100.0 | |
| d1wb9a4 | 115 | DNA repair protein MutS, domain I {Escherichia col | 100.0 | |
| d1ewqa4 | 120 | DNA repair protein MutS, domain I {Thermus aquatic | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.83 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.82 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.82 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.82 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.82 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.82 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.81 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.81 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.81 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.81 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.8 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.77 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.74 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.74 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.71 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.69 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.68 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.67 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.67 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.59 | |
| d1ewqa3 | 146 | DNA repair protein MutS, domain II {Thermus aquati | 99.59 | |
| d1wb9a3 | 153 | DNA repair protein MutS, domain II {Escherichia co | 99.54 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.93 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.8 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.25 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.64 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.22 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.2 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 97.18 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.18 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.02 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.96 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.95 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.8 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.72 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.59 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.43 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 96.4 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.39 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.28 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.24 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.22 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 96.16 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.13 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.98 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.94 | |
| d2diga1 | 55 | Lamin-b receptor {Human (Homo sapiens) [TaxId: 960 | 95.84 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.78 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.72 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.71 | |
| d1mhna_ | 59 | Survival motor neuron protein 1, smn {Human (Homo | 95.65 | |
| d2d9ta1 | 60 | Tudor domain-containing protein 3, TDRD3 {Mouse (M | 95.59 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.53 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.15 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 95.13 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.1 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.08 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.0 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 94.9 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.89 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 94.82 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.68 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.56 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.41 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 94.37 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.29 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.15 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.11 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.11 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 93.85 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.84 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.83 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.55 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 93.53 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.49 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 93.43 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.23 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.18 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.17 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.11 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.03 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.95 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.84 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 92.72 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.64 | |
| d2diqa1 | 97 | Tudor and KH domain-containing protein TDRKH {Huma | 92.45 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 92.45 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.38 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.16 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.06 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.03 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 91.88 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 91.69 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 91.63 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 91.6 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.99 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.93 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.66 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 90.55 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 90.48 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 90.45 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 90.37 | |
| d2hqxa1 | 90 | P100 co-activator, SND1 {Human (Homo sapiens) [Tax | 90.27 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 90.26 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.15 | |
| d2g3ra1 | 53 | p53-binding protein 1, 53BP1 {Human (Homo sapiens) | 90.06 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.96 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 89.96 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 89.59 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 89.49 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.45 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 89.16 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 88.99 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 88.85 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.75 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 88.43 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.29 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 88.27 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 88.19 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 87.96 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 87.91 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 87.67 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 87.66 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 87.57 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.51 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 87.5 | |
| d1wgsa_ | 133 | Probable histone acetyltransferase MYST1 {Mouse (M | 87.44 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 87.34 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 87.33 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 87.26 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 87.21 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 86.66 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 86.29 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 86.25 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 85.54 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 85.26 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 85.22 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 85.14 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 84.2 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 83.54 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 83.47 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 83.38 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 83.38 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 83.35 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 83.14 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 82.73 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 82.67 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 82.44 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 82.17 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 82.04 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 81.39 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 81.24 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 81.17 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 81.15 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 81.05 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 80.75 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 80.67 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 80.56 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 80.55 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 80.15 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 80.1 |
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=411.26 Aligned_cols=232 Identities=40% Similarity=0.651 Sum_probs=216.3
Q ss_pred CCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 53302317999998808984079772112469998201334422788888279999428997138886223489884408
Q 000778 978 TCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1288)
Q Consensus 978 ~~rP~~~~~~~~~~~~i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G 1057 (1288)
||||+|++ .+.+.++++|||+++.. ....|||||+.++. ..++++||||||||||||||+||++++|||+|
T Consensus 1 y~~P~~~~-----~~~l~i~~~rHPlle~~--~~~~~VpNdi~l~~--~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G 71 (234)
T d1wb9a2 1 YTCPTFID-----KPGIRITEGRHPVVEQV--LNEPFIANPLNLSP--QRRMLIITGPNMGGKSTYMRQTALIALMAYIG 71 (234)
T ss_dssp CBCCEECS-----SSCEEEEEECCTTHHHH--CSSCCCCEEEEECS--SSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT
T ss_pred CCCCEECC-----CCCEEEEEEECCEEECC--CCCCCCCEEEEECC--CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 97877818-----99689997378779744--69982640579889--95399995467313689999879999998729
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 62246544433188998730802267620011289999999999939999499994899999958899999999999974
Q 000778 1058 ADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVH 1137 (1288)
Q Consensus 1058 ~~VPa~~~~~~~~d~i~~rig~~d~i~~~~Stf~~em~e~~~il~~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~ 1137 (1288)
+||||+.+.++++|+||++++..|++..+.|+|+.||.+++.|+..++++||||+||+|+||++.||.+++++++++|..
T Consensus 72 ~~VpA~~a~~~~~d~I~~~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~ 151 (234)
T d1wb9a2 72 SYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLAN 151 (234)
T ss_dssp CCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHH
T ss_pred CEEECCCEECCCCHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 76741766613442023487467534365318999999999999745466088532223587745666789876454320
Q ss_pred CCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 26948999918901366302898627856479970688785507773675289899868899999959999999999999
Q 000778 1138 KVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAK 1217 (1288)
Q Consensus 1138 ~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~~~~~~i~~ly~l~~G~~~~s~g~~vA~~aGlp~~vi~~A~~~ 1217 (1288)
+.++.++++||++++.......+.+.++||.....+ +.+.|+|+|.+|+++.|||+++|+++|+|++||++|+++
T Consensus 152 ~~~~~~i~tTH~~~l~~~~~~~~~v~~~~~~~~~~~-----~~i~f~YkL~~G~~~~s~ai~iA~~~Glp~~ii~~A~~i 226 (234)
T d1wb9a2 152 KIKALTLFATHYFELTQLPEKMEGVANVHLDALEHG-----DTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQK 226 (234)
T ss_dssp TTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEET-----TEEEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHCCCCEEEEEEEEEECC-----CCCEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 454428985246877643312455478998876036-----840178774679999729999999919699999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q 000778 1218 STEFEA 1223 (1288)
Q Consensus 1218 ~~~~e~ 1223 (1288)
.+++|.
T Consensus 227 ~~~lE~ 232 (234)
T d1wb9a2 227 LRELES 232 (234)
T ss_dssp HHHHHT
T ss_pred HHHHHC
T ss_conf 998763
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=100.00 E-value=0 Score=398.99 Aligned_cols=222 Identities=44% Similarity=0.685 Sum_probs=205.3
Q ss_pred CCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 53302317999998808984079772112469998201334422788888279999428997138886223489884408
Q 000778 978 TCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1288)
Q Consensus 978 ~~rP~~~~~~~~~~~~i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G 1057 (1288)
||||+|.+ .++++++|||+++. ...|||||+.++. ++++|||||||||||+||+||++++|||+|
T Consensus 1 y~~P~~~~-------~~~i~~~rHPlle~----~~~~VpNdi~~~~----~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G 65 (224)
T d1ewqa2 1 YVRPRFGD-------RLQIRAGRHPVVER----RTEFVPNDLEMAH----ELVLITGPNMAGKSTFLRQTALIALLAQVG 65 (224)
T ss_dssp CBCCEESS-------SEEEEEECCTTGGG----TSCCCCEEEEESS----CEEEEESCSSSSHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCC-------CEEEEECCCCEECC----CCCEECCEEEECC----CEEEEECCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 97881178-------27898571887948----9975455588478----679997887345323455658999998525
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 62246544433188998730802267620011289999999999939999499994899999958899999999999974
Q 000778 1058 ADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVH 1137 (1288)
Q Consensus 1058 ~~VPa~~~~~~~~d~i~~rig~~d~i~~~~Stf~~em~e~~~il~~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~ 1137 (1288)
|||||+.+.++++|+||++++..|++..+.|+|+.||.+++.|+..++++||||+||+|+||++.||.+++++++++|.+
T Consensus 66 ~~vpA~~~~i~~~d~I~~~~~~~d~~~~~~StF~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~ 145 (224)
T d1ewqa2 66 SFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE 145 (224)
T ss_dssp CCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEECCCEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHH
T ss_conf 04613751994011699998777602378307898678898775028977278554545686233200258888888862
Q ss_pred CCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 26948999918901366302898627856479970688785507773675289899868899999959999999999999
Q 000778 1138 KVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAK 1217 (1288)
Q Consensus 1138 ~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~~~~~~i~~ly~l~~G~~~~s~g~~vA~~aGlp~~vi~~A~~~ 1217 (1288)
. ++.++++|||++|..... +.+.++||..... .+.++|+|+|.+|+++.|||+++|+++|+|++||++|+++
T Consensus 146 ~-~~~~i~tTH~~eL~~l~~--~~~~~~~~~~~~~-----~~~~~f~Ykl~~G~~~~s~ai~iA~~~Glp~~II~rA~~i 217 (224)
T d1ewqa2 146 R-RAYTLFATHYFELTALGL--PRLKNLHVAAREE-----AGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARAL 217 (224)
T ss_dssp H-TCEEEEECCCHHHHTCCC--TTEEEEEEEEECC-----SSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred C-CCCEEEEEECHHHHHHHH--CCCCEEEEEEEEE-----CCCEEEEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 3-761378652023332210--2110699999981-----7975898897237998639999999919699999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q 000778 1218 STEFE 1222 (1288)
Q Consensus 1218 ~~~~e 1222 (1288)
.+.++
T Consensus 218 ~~~l~ 222 (224)
T d1ewqa2 218 LQAMA 222 (224)
T ss_dssp HHHHT
T ss_pred HHHHH
T ss_conf 99986
|
| >d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA repair protein MutS, domain III superfamily: DNA repair protein MutS, domain III family: DNA repair protein MutS, domain III domain: DNA repair protein MutS, domain III species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-43 Score=309.09 Aligned_cols=295 Identities=21% Similarity=0.279 Sum_probs=231.5
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 99889850244345789985558888763129499999999730889999999999999998861991369999995099
Q 000778 650 DAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSR 729 (1288)
Q Consensus 650 D~~Tl~~LEI~~n~~~g~~~gSLf~lLn~t~T~~GkRLLr~wl~~PL~d~~~I~~RldaVe~L~~~n~~~~~~lr~~Lk~ 729 (1288)
|++|++||||+.|. .|+.+||||++||+|+|+||+|+||+||++|++|++.|++|||+|++|.. ....+|..|++
T Consensus 1 D~~T~~nLEl~~~~-~g~~~~SL~~~ln~c~T~~GkRlLr~wLl~Pl~d~~~I~~R~d~Ve~l~~----~~~~l~~~L~~ 75 (297)
T d1wb9a1 1 DAATRRNLEITQNL-AGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQD----FTAGLQPVLRQ 75 (297)
T ss_dssp CHHHHHHTTSSSCT-TSCSTTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGG----GHHHHHHHHHT
T ss_pred CHHHHHHHCCCCCC-CCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHC
T ss_conf 97688874768688-99988839999767899089999999986714899999999999999997----68779999962
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHH
Q ss_conf 99899999998625334687886302238988999999999984329999998789898720063668764338999414
Q 000778 730 LPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPA 809 (1288)
Q Consensus 730 lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~ 809 (1288)
+||++|++.++..+... ..++..+...+..+..+..... ................+..
T Consensus 76 l~Dierl~~k~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 133 (297)
T d1wb9a1 76 VGDLERILARLALRTAR---------------PRDLARMRHAFQQLPELRAQLE-------TVDSAPVQALREKMGEFAE 133 (297)
T ss_dssp TCSHHHHHHHHHHTCCC---------------HHHHHHHHHHHTTHHHHHHHHH-------SCCCHHHHHHHHHHCCCHH
T ss_pred CCHHHHHHHHHHHHHHC---------------HHHHHHHHHHHHHHHHHHHHHH-------HCCCHHHHHHHCCCCCHHH
T ss_conf 22088889899987602---------------0278888889996425888766-------3022566642103320034
Q ss_pred HHHHHHHHHHHHCH-HHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCC
Q ss_conf 99999999964124-75307995350799995479999999999999999999999881698720898677214431432
Q 000778 810 IVSILKHFKDAFDW-VEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPE 888 (1288)
Q Consensus 810 i~~~l~~~~~~~d~-~~~~~~g~i~~~~g~d~eld~~~~~~~~~~~~L~~~l~~~~~~l~~~~i~~~~~~~~~y~iev~~ 888 (1288)
..+.+...++. .........++++|+++++|.++..+.+.+..+.++...+...++...+++......+|+++++.
T Consensus 134 ---~~~~i~~~i~~~~~~~~~~~~~i~~g~~~~ld~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (297)
T d1wb9a1 134 ---LRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGFNAVHGYYIQISR 210 (297)
T ss_dssp ---HHHHHHHHBCSSCCSCSTTCCCBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEEEETTTEEEEEEEH
T ss_pred ---HHHHHHHHHHCCCHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECC
T ss_conf ---99999999844676550169953788780689999998877789999999999971877514877521544664022
Q ss_pred CCCCCCCCCEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11388898579973002708982857999999989999999999999999998999863589999999999999898688
Q 000778 889 SLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLA 968 (1288)
Q Consensus 889 ~~~~~~p~~~~~~ss~k~~~ry~t~~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~ia~LD~L~SlA 968 (1288)
......|.+|...+.+++..+|+++++.+++.++.++..++......++.+++..+..+.+.|..+++++|+||||+|||
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~l~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~~~~iaeLD~l~S~A 290 (297)
T d1wb9a1 211 GQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLA 290 (297)
T ss_dssp HHHTTSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11111220145632024631110277999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHC
Q ss_conf 975115
Q 000778 969 IASDFY 974 (1288)
Q Consensus 969 ~~a~~~ 974 (1288)
.+|..+
T Consensus 291 ~~A~~~ 296 (297)
T d1wb9a1 291 ERAYTL 296 (297)
T ss_dssp HHHHHT
T ss_pred HHHHHC
T ss_conf 999864
|
| >d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA repair protein MutS, domain III superfamily: DNA repair protein MutS, domain III family: DNA repair protein MutS, domain III domain: DNA repair protein MutS, domain III species: Thermus aquaticus [TaxId: 271]
Probab=100.00 E-value=8.1e-41 Score=289.98 Aligned_cols=271 Identities=25% Similarity=0.307 Sum_probs=218.9
Q ss_pred CCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 85558888763129499999999730889999999999999998861991369999995099998999999986253346
Q 000778 668 SSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEAN 747 (1288)
Q Consensus 668 ~~gSLf~lLn~t~T~~GkRLLr~wl~~PL~d~~~I~~RldaVe~L~~~n~~~~~~lr~~Lk~lpDleRll~ri~~~~~~~ 747 (1288)
.+||||++||+|+|+||+|+||+||++|++|++.|++|||+|++|.. +..++..++..|+++||++|++.|+..+..
T Consensus 2 ~kgSL~~~ln~t~T~~GkRlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~-~~~~~~~l~~~L~~i~Dler~l~~~~~~~~-- 78 (275)
T d1ewqa1 2 GQDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVR-EGALREGVRRLLYRLADLERLATRLELGRA-- 78 (275)
T ss_dssp SCCCHHHHHCCCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHH-CHHHHHHHHHHHTTCCCHHHHHHHHHTTCC--
T ss_pred CCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHCCCHHHHHHHHHHCCCC--
T ss_conf 99868999767989189999999986725899999999999999983-936678899998544126789999981788--
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCH--HH
Q ss_conf 8788630223898899999999998432999999878989872006366876433899941499999999964124--75
Q 000778 748 GRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDW--VE 825 (1288)
Q Consensus 748 ~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~i~~~l~~~~~~~d~--~~ 825 (1288)
. ...+..+...+..+..+.. .+.. ....+.+..+.+.+...+.. ..
T Consensus 79 -~------------~~~~~~~~~~~~~~~~i~~-------~l~~------------~~~~~~l~~l~~~i~~~i~~~~~~ 126 (275)
T d1ewqa1 79 -S------------PKDLGALRRSLQILPELRA-------LLGE------------EVGLPDLSPLKEELEAALVEDPPL 126 (275)
T ss_dssp -C------------HHHHHHHHHHHHHHHHHHH-------HHCT------------TSCCCCCHHHHHHHHHHBCSSCCS
T ss_pred -C------------CHHHHHHHHHHHHHHHHHH-------HHHH------------HCCCCHHHHHHHHHHHHHHHCCHH
T ss_conf -8------------3379999999999889999-------9874------------013527999999999998417685
Q ss_pred HCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCCCCCCEEEEEEEC
Q ss_conf 30799535079999547999999999999999999999988169872089867721443143211388898579973002
Q 000778 826 ANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKK 905 (1288)
Q Consensus 826 ~~~~g~i~~~~g~d~eld~~~~~~~~~~~~L~~~l~~~~~~l~~~~i~~~~~~~~~y~iev~~~~~~~~p~~~~~~ss~k 905 (1288)
....+.+ .++|+|+++|.++..+.++...+.+.+..+....+..++.+......+|+++++......+|.+|...++++
T Consensus 127 ~~~~~~~-i~~g~~~~ld~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 205 (275)
T d1ewqa1 127 KVSEGGL-IREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLK 205 (275)
T ss_dssp CTTSSCC-BCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEETTTEEEEEEEGGGGGGSCTTCEEEEECS
T ss_pred HCCCCCE-ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCC
T ss_conf 5646697-589999788999999876899999999999986287602224226665466520445544201134301234
Q ss_pred CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 708982857999999989999999999999999998999863589999999999999898688975115
Q 000778 906 GFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFY 974 (1288)
Q Consensus 906 ~~~ry~t~~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~ia~LD~L~SlA~~a~~~ 974 (1288)
+..+|+||++.+++.++.+++.++......++.++...|..|++.|..+++++|+||||+|||.+|..+
T Consensus 206 ~~~~~~t~~~~~l~~~l~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~SlA~vA~~~ 274 (275)
T d1ewqa1 206 DRQRYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRY 274 (275)
T ss_dssp SEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 402562688889999999999999999999999999999999999999999999999999999999865
|
| >d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: MutS N-terminal domain-like superfamily: DNA repair protein MutS, domain I family: DNA repair protein MutS, domain I domain: DNA repair protein MutS, domain I species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-35 Score=251.26 Aligned_cols=106 Identities=27% Similarity=0.476 Sum_probs=97.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEECCCHHHHHHHCCEEEECC------CCCCCCCCCCCHHHHHHHHH
Q ss_conf 000379989999999985199939999608559982101998752232454129------99857767441758999999
Q 000778 322 DFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG------EQPHCGFPERNFSMNVEKLA 395 (1288)
Q Consensus 322 ~~~~~~TP~~kQyw~iK~~~~D~IlfFk~GkFYEly~~DA~i~ak~L~L~~~~g------~~~~~GfPe~~l~~~~~~Lv 395 (1288)
+.+.++||||+|||+||++|||+|||||||+|||+|++||++++++|||++|.+ .+||||||+++++.|+++|+
T Consensus 4 ~~~~~~TP~~~Qy~eiK~~~pd~ill~rvG~FYE~y~~DA~~~~~~L~i~lt~~~~~~~~~v~m~GfP~~~l~~yl~~Lv 83 (115)
T d1wb9a4 4 ENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLV 83 (115)
T ss_dssp CCGGGSCHHHHHHHHHHHHSTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEECCSSSCCEEEEEEEGGGHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 21443898999999999878986999996865122466699987632058842577889863797167888789999999
Q ss_pred HCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEEEEEEC
Q ss_conf 829959999136995889997631188886045557888407
Q 000778 396 RKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTK 437 (1288)
Q Consensus 396 ~~GyKVavveQ~Et~~~~~~r~~~~~~k~kvv~Rev~~IiTp 437 (1288)
++||||+||||++++.. ..++++|+|++||||
T Consensus 84 ~~G~kVai~eQ~~~~~~----------~~~~~~R~VtrIiTP 115 (115)
T d1wb9a4 84 NQGESVAICEQIGDPAT----------SKGPVERKVVRIVTP 115 (115)
T ss_dssp HTTCCEEEEEECSCGGG----------CSSSCCEEEEEEECT
T ss_pred HCCCEEEEEEECCCCCC----------CCCCCEEEEEEEECC
T ss_conf 78966999974257421----------489614758999892
|
| >d1ewqa4 d.75.2.1 (A:1-120) DNA repair protein MutS, domain I {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: MutS N-terminal domain-like superfamily: DNA repair protein MutS, domain I family: DNA repair protein MutS, domain I domain: DNA repair protein MutS, domain I species: Thermus aquaticus [TaxId: 271]
Probab=100.00 E-value=8.4e-34 Score=242.46 Aligned_cols=112 Identities=31% Similarity=0.513 Sum_probs=101.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEECCCHHHHHHHCCEEEECC-----CCCCCCCCCCCHHHHHH
Q ss_conf 8892000379989999999985199939999608559982101998752232454129-----99857767441758999
Q 000778 318 YLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-----EQPHCGFPERNFSMNVE 392 (1288)
Q Consensus 318 ~iP~~~~~~~TP~~kQyw~iK~~~~D~IlfFk~GkFYEly~~DA~i~ak~L~L~~~~g-----~~~~~GfPe~~l~~~~~ 392 (1288)
.|+...+.++|||++|||++|++|+|+|||||||+|||+|+.||++++++|+|+++.+ ..+|||||.++++.|++
T Consensus 4 ~~k~~~~~~ltPm~~qY~~~K~~~~d~Ivl~qvG~FYE~Y~~Da~~~~~~l~i~l~~~~~~~~~~~maGfP~~~l~~yl~ 83 (120)
T d1ewqa4 4 MLKGEGPGPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPLRAFEAYAE 83 (120)
T ss_dssp CCCCSCCSCCCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEEECSSCEEEEEEEEGGGHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCEEEECCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 44677887889899999999987899699998288989754359999997384676203578987402687757899999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEEEEEECCC
Q ss_conf 99982995999913699588999763118888604555788840761
Q 000778 393 KLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGT 439 (1288)
Q Consensus 393 ~Lv~~GyKVavveQ~Et~~~~~~r~~~~~~k~kvv~Rev~~IiTpGT 439 (1288)
+|+++||+|+||||+|++.. ..++++|+|++||||||
T Consensus 84 ~L~~~GytV~v~eQ~e~~~~----------~~~~~~R~vt~I~SPGT 120 (120)
T d1ewqa4 84 RLLKMGFRLAVADQVEPAEE----------AEGLVRREVTQLLTPGT 120 (120)
T ss_dssp HHHHTTCCEEEEEECSCGGG----------CSSSCCEEEEEEECGGG
T ss_pred HHHHCCCEEEEEEECCCCCC----------CCCCCEEEEEEEECCCC
T ss_conf 99987945999987146544----------69973676889889899
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=5.3e-20 Score=149.01 Aligned_cols=170 Identities=19% Similarity=0.228 Sum_probs=124.5
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH-------------------HH
Q ss_conf 89840797721124699982013344227888882799994289971388862234898-------------------84
Q 000778 994 ISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------LA 1054 (1288)
Q Consensus 994 i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~i-------------------la 1054 (1288)
|.+++..+-+ ++..|.+|++|.+ .+|++++|+||||+|||||+|+++++.. +.
T Consensus 3 I~v~nl~k~y-------g~~~vl~~vs~~v-~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 74 (238)
T d1vpla_ 3 VVVKDLRKRI-------GKKEILKGISFEI-EEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 74 (238)
T ss_dssp EEEEEEEEEE-------TTEEEEEEEEEEE-CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHH
T ss_pred EEEEEEEEEE-------CCEEEECCCEEEE-CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHH
T ss_conf 8999589999-------9999980625688-4897999999999999999999966988788879998672446839887
Q ss_pred HCCCCCCCCC---CCCCHHHH---------------------HHHHCCCHHHHHHCCCCHHHHH-HHHHHHHHHCCCCCE
Q ss_conf 4086224654---44331889---------------------9873080226762001128999-999999993999949
Q 000778 1055 QVGADVPAEI---FEISPVDR---------------------IFVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSL 1109 (1288)
Q Consensus 1055 q~G~~VPa~~---~~~~~~d~---------------------i~~rig~~d~i~~~~Stf~~em-~e~~~il~~a~~~sL 1109 (1288)
..-+|+|... ..+.+.+. ....++..+......+++++.+ ++++.+..++.+|.+
T Consensus 75 ~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~i 154 (238)
T d1vpla_ 75 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL 154 (238)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred HHEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCE
T ss_conf 21867500154687866778889899861799899999999999867978888504533799898999999998659998
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCC
Q ss_conf 999489999995889999999999997426948999918901366302898627856479970688
Q 000778 1110 VVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1110 vLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~ 1175 (1288)
+|||||++|.|+.....+ +.++..+.++ +.++|++||+.+.+..+++ +|.+++.|.++..|+
T Consensus 155 llLDEPt~gLD~~~~~~i-~~~i~~~~~~-g~tii~~tH~l~~~~~~~d--rv~vl~~G~iv~~g~ 216 (238)
T d1vpla_ 155 AILDEPTSGLDVLNAREV-RKILKQASQE-GLTILVSSHNMLEVEFLCD--RIALIHNGTIVETGT 216 (238)
T ss_dssp EEEESTTTTCCHHHHHHH-HHHHHHHHHT-TCEEEEEECCHHHHTTTCS--EEEEEETTEEEEEEE
T ss_pred EEECCCCCCCCHHHHHHH-HHHHHHHHHC-CCEEEEEECCHHHHHHHCC--EEEEEECCEEEEECC
T ss_conf 873379889798999999-9999999965-9989999598999999699--999998999999928
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.82 E-value=3.9e-20 Score=149.91 Aligned_cols=172 Identities=13% Similarity=0.149 Sum_probs=123.5
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC---------------
Q ss_conf 08984079772112469998201334422788888279999428997138886223489884408---------------
Q 000778 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG--------------- 1057 (1288)
Q Consensus 993 ~i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G--------------- 1057 (1288)
.|++++..+-+ ++..+.+|++|.+ .+|++++|+|||||||||++|+|+++.- +..|
T Consensus 6 ~I~v~nlsk~y-------g~~~al~~vsl~v-~~Ge~~~liGpsGaGKSTLl~~i~Gl~~-p~sG~I~i~g~~i~~~~~~ 76 (239)
T d1v43a3 6 EVKLENLTKRF-------GNFTAVNKLNLTI-KDGEFLVLLGPSGCGKTTTLRMIAGLEE-PTEGRIYFGDRDVTYLPPK 76 (239)
T ss_dssp CEEEEEEEEEE-------TTEEEEEEEEEEE-CTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGG
T ss_pred EEEEEEEEEEE-------CCEEEECCEEEEE-CCCCEEEEECCCCCHHHHHHHHHHCCCC-CCCCEEEECCEECCCCCCC
T ss_conf 49998799999-------9999981306788-7998999999999829999999975899-9878799916413547700
Q ss_pred ----CCCCCCCC---CCCHHHH---------------------HHHHCCCHHHHHHCCCCHH-HHHHHHHHHHHHCCCCC
Q ss_conf ----62246544---4331889---------------------9873080226762001128-99999999999399994
Q 000778 1058 ----ADVPAEIF---EISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNS 1108 (1288)
Q Consensus 1058 ----~~VPa~~~---~~~~~d~---------------------i~~rig~~d~i~~~~Stf~-~em~e~~~il~~a~~~s 1108 (1288)
.|||+... .+.+.+. ++..++..+......+.++ ++.++++.+..++.+|+
T Consensus 77 ~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~ 156 (239)
T d1v43a3 77 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD 156 (239)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred CCEEEEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 01589980033534222099999999987399999999999999987598556609954699999889999766404998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCCC
Q ss_conf 99994899999958899999999999974269489999189013663028986278564799706887
Q 000778 1109 LVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1109 LvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~~ 1176 (1288)
++|+|||+.|.|+.....+ +.++..+.++.+.++|++||+.+.+..+++ +|..++.|.++..|++
T Consensus 157 iLllDEPts~LD~~~~~~i-~~ll~~l~~~~g~tii~vTHd~~~a~~~~d--ri~vm~~G~iv~~G~~ 221 (239)
T d1v43a3 157 VLLMDEPLSNLDAKLRVAM-RAEIKKLQQKLKVTTIYVTHDQVEAMTMGD--RIAVMNRGQLLQIGSP 221 (239)
T ss_dssp EEEEESTTTTSCHHHHHHH-HHHHHHHHHHHTCEEEEEESCHHHHHHHCS--EEEEEETTEEEEEECH
T ss_pred CEEECCCCCCCCHHHHHHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHCC--EEEEEECCEEEEECCH
T ss_conf 2430688666898999899-999999987319807999489999998699--9999989999998599
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.82 E-value=7.3e-20 Score=148.03 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=117.9
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH------------------------HHCCCCCCCCC---
Q ss_conf 820133442278888827999942899713888622348988------------------------44086224654---
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEI--- 1064 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~il------------------------aq~G~~VPa~~--- 1064 (1288)
+..+.+||+|.+ .+|++++|+|||||||||++|+|+++.-. .+.-.+||+..
T Consensus 15 ~~~al~~vsl~i-~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~ 93 (240)
T d1g2912 15 EVTAVREMSLEV-KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93 (240)
T ss_dssp TEEEEEEEEEEE-ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCC
T ss_pred CEEEECCEEEEE-CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHHC
T ss_conf 999985606688-6998999999999809999999964878898989999998035664442453225512002212223
Q ss_pred CCCCHHHH---------------------HHHHCCCHHHHHHCCCCHHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCHH
Q ss_conf 44331889---------------------9873080226762001128999-9999999939999499994899999958
Q 000778 1065 FEISPVDR---------------------IFVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1065 ~~~~~~d~---------------------i~~rig~~d~i~~~~Stf~~em-~e~~~il~~a~~~sLvLlDE~grGTs~~ 1122 (1288)
..+.+.+. ++..++..+......+.+++.+ ++++.+..++.+|+++|+|||+.|.|+.
T Consensus 94 ~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~ 173 (240)
T d1g2912 94 PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173 (240)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 10116676330687729998999999999998759966762993349999999999999982699889825887656989
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCC
Q ss_conf 89999999999997426948999918901366302898627856479970688
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1123 Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~ 1175 (1288)
....+. ..+..+.++.+.++|++||+.+.+..+++ +|..++.|.++..|+
T Consensus 174 ~~~~i~-~~l~~l~~~~g~tvi~vTHd~~~~~~~~d--rv~vm~~G~iv~~G~ 223 (240)
T d1g2912 174 LRVRMR-AELKKLQRQLGVTTIYVTHDQVEAMTMGD--RIAVMNRGVLQQVGS 223 (240)
T ss_dssp HHHHHH-HHHHHHHHHHTCEEEEEESCHHHHHHHCS--EEEEEETTEEEEEEC
T ss_pred HHHHHH-HHHHHHHHCCCCEEEEECCCHHHHHHHCC--EEEEEECCEEEEECC
T ss_conf 998999-99999986369889999599999999699--999998999999859
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.82 E-value=8.2e-20 Score=147.69 Aligned_cols=172 Identities=17% Similarity=0.133 Sum_probs=125.2
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH--------------------
Q ss_conf 808984079772112469998201334422788888279999428997138886223489--------------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------------- 1051 (1288)
Q Consensus 992 ~~i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~-------------------- 1051 (1288)
..|++++...-+ ++..+.+||+|.+ .+|++++|+||||+||||++|+|+++.
T Consensus 5 ~~Lev~~l~k~y-------g~~~al~~vs~~i-~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~ 76 (240)
T d1ji0a_ 5 IVLEVQSLHVYY-------GAIHAIKGIDLKV-PRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76 (240)
T ss_dssp EEEEEEEEEEEE-------TTEEEEEEEEEEE-ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH
T ss_pred EEEEEEEEEEEE-------CCEEEEEEEEEEE-CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHH
T ss_conf 079996189998-------9988883025788-89979999999998599999999678888803898424434466088
Q ss_pred HHHHCC-CCCCCCC---CCCCHHHHHHHHC---------------------CCHHHHHHCCCCHHHHH-HHHHHHHHHCC
Q ss_conf 884408-6224654---4433188998730---------------------80226762001128999-99999999399
Q 000778 1052 ILAQVG-ADVPAEI---FEISPVDRIFVRM---------------------GAKDHIMAGQSTFLTEL-SETALMLSSAT 1105 (1288)
Q Consensus 1052 ilaq~G-~~VPa~~---~~~~~~d~i~~ri---------------------g~~d~i~~~~Stf~~em-~e~~~il~~a~ 1105 (1288)
..++.| .|+|... ..+.+.+.++... +..+......+++++.+ ++++.+..++.
T Consensus 77 ~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 88874235567655457763699999988873278889999999999874176888758543389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCC
Q ss_conf 9949999489999995889999999999997426948999918901366302898627856479970688
Q 000778 1106 RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1106 ~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~ 1175 (1288)
+|.++|||||++|.|+.....+. .++..+.++ +.+++++||+.+.+..+++ +|.+++.|.++..|+
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~-~~i~~l~~~-g~til~~tH~l~~~~~~~d--rv~vl~~G~iv~~g~ 222 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVF-EVIQKINQE-GTTILLVEQNALGALKVAH--YGYVLETGQIVLEGK 222 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHT-TCCEEEEESCHHHHHHHCS--EEEEEETTEEEEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHC-CCEEEEEECCHHHHHHHCC--EEEEEECCEEEEECC
T ss_conf 99874003988679999999999-999999968-9989999588999999699--999998999999848
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=9.3e-20 Score=147.33 Aligned_cols=160 Identities=14% Similarity=0.100 Sum_probs=118.8
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH--------------------H---HCCCCCCCCCC---CC
Q ss_conf 0133442278888827999942899713888622348988--------------------4---40862246544---43
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------A---QVGADVPAEIF---EI 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~il--------------------a---q~G~~VPa~~~---~~ 1067 (1288)
.+.+||+|.+ ..|++++|+|||||||||++|+|+++.-. . ..-.|||.... .+
T Consensus 19 ~al~~vsl~i-~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~ 97 (240)
T d3dhwc1 19 QALNNVSLHV-PAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR 97 (240)
T ss_dssp EEEEEEEEEE-CSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTS
T ss_pred EEEECEEEEE-CCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9861505788-699799998999898889999875886366773288676852087555115541664302252227996
Q ss_pred CHHHH---------------------HHHHCCCHHHHHHCCCCHH-HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 31889---------------------9873080226762001128-9999999999939999499994899999958899
Q 000778 1068 SPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1068 ~~~d~---------------------i~~rig~~d~i~~~~Stf~-~em~e~~~il~~a~~~sLvLlDE~grGTs~~Dg~ 1125 (1288)
.+.+. ++.++|..+........++ ++.++++.+..++.+|.++|+|||+.|.|+.-..
T Consensus 98 tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~ 177 (240)
T d3dhwc1 98 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177 (240)
T ss_dssp BHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHH
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHH
T ss_conf 49999999999849998999999999999769903554894349999998999864010589868744655658988856
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCCCC
Q ss_conf 9999999999742694899991890136630289862785647997068878
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGG 1177 (1288)
Q Consensus 1126 aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~~~ 1177 (1288)
.+. .++..+.++.+.++|++||+.+++..+++ +|..++.|.++..|+++
T Consensus 178 ~i~-~~l~~l~~~~g~tvi~vTHdl~~~~~~~d--ri~vl~~G~iv~~G~~~ 226 (240)
T d3dhwc1 178 SIL-ELLKDINRRLGLTILLITHEMDVVKRICD--CVAVISNGELIEQDTVS 226 (240)
T ss_dssp HHH-HHHHHHHHHHCCEEEEEBSCHHHHHHHCS--EEEEEETTEEEEEEETT
T ss_pred HHH-HHHHHHHHCCCCEEEEECCCHHHHHHHCC--EEEEEECCEEEEECCHH
T ss_conf 799-99999986469789998389999998699--99999799999987999
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=4.5e-20 Score=149.44 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=117.9
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH------------------HHCCCCCCCCCCC---CCH-
Q ss_conf 820133442278888827999942899713888622348988------------------4408622465444---331-
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIFE---ISP- 1069 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~il------------------aq~G~~VPa~~~~---~~~- 1069 (1288)
+..+.+|++|.+ .+|++++|+||||||||||||+++++.-. .+.-.|||+...- +.+
T Consensus 12 ~~~~l~~isl~i-~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~ 90 (232)
T d2awna2 12 EVVVSKDINLDI-HEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVA 90 (232)
T ss_dssp TEEEEEEEEEEE-CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC-------
T ss_pred CEEEEEEEEEEE-CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHHH
T ss_conf 999981117788-6998999998999829999999965878888889999997788864443222343342026433378
Q ss_pred --------------------HHHHHHHCCCHHHHHHCCCCHHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf --------------------8899873080226762001128999-9999999939999499994899999958899999
Q 000778 1070 --------------------VDRIFVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1070 --------------------~d~i~~rig~~d~i~~~~Stf~~em-~e~~~il~~a~~~sLvLlDE~grGTs~~Dg~aia 1128 (1288)
++.++..++..+......+.+++.+ ++++.+..++.+|.++|+|||+.|.|+.....+.
T Consensus 91 eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~ 170 (232)
T d2awna2 91 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 170 (232)
T ss_dssp --------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 89789998759988999999999997578865664896569999999999999970399889975888788988998999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCC
Q ss_conf 99999997426948999918901366302898627856479970688
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1129 ~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~ 1175 (1288)
..+..+.++.+.++|++||+.+.+..+++ +|..++.|.++..|+
T Consensus 171 -~~l~~l~~~~g~tii~vTHd~~~a~~~~d--ri~vm~~G~iv~~G~ 214 (232)
T d2awna2 171 -IEISRLHKRLGRTMIYVTHDQVEAMTLAD--KIVVLDAGRVAQVGK 214 (232)
T ss_dssp -HHHHHHHHHSCCEEEEEESCHHHHHHHCS--EEEEEETTEEEEEEC
T ss_pred -HHHHHHHHHCCCEEEEEECCHHHHHHHCC--EEEEEECCEEEEEEC
T ss_conf -99999987429879999489999999699--999997999999808
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.81 E-value=1.2e-19 Score=146.69 Aligned_cols=160 Identities=15% Similarity=0.121 Sum_probs=119.0
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH------------------HHCCCCCCCCCC---CCCHHH
Q ss_conf 20133442278888827999942899713888622348988------------------440862246544---433188
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~il------------------aq~G~~VPa~~~---~~~~~d 1071 (1288)
+++.+||+|.+ .+|++++|+|||||||||++|+++++.-. .+.-.|||.... .+.+.+
T Consensus 13 ~~aL~~vs~~i-~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~e 91 (229)
T d3d31a2 13 NFSLDNLSLKV-ESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (229)
T ss_dssp SCEEEEEEEEE-CTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred CEEEEEEEEEE-CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHH
T ss_conf 97884337898-79989999989998299999999647688878899956734652165740561512111174665778
Q ss_pred H------------------HHHHCCCHHHHHHCCCCHHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 9------------------98730802267620011289-9999999999399994999948999999588999999999
Q 000778 1072 R------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVL 1132 (1288)
Q Consensus 1072 ~------------------i~~rig~~d~i~~~~Stf~~-em~e~~~il~~a~~~sLvLlDE~grGTs~~Dg~aia~ail 1132 (1288)
. +..+++..+......+++++ +.++++.+..++++|+++|+|||++|.|+.....+ +.++
T Consensus 92 nl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i-~~~l 170 (229)
T d3d31a2 92 NLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA-REML 170 (229)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHH-HHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCHHHCCHHHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHH-HHHH
T ss_conf 888877640553899999999982565557589554799984014030434436771443478767998999999-9999
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCCC
Q ss_conf 99974269489999189013663028986278564799706887
Q 000778 1133 EHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1133 e~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~~ 1176 (1288)
..+.++.+.++|++||+.+.+..+++ +|..++.|.++..|++
T Consensus 171 ~~l~~~~g~tii~vtHd~~~~~~~~d--rv~vm~~G~iv~~g~~ 212 (229)
T d3d31a2 171 SVLHKKNKLTVLHITHDQTEARIMAD--RIAVVMDGKLIQVGKP 212 (229)
T ss_dssp HHHHHHTTCEEEEEESCHHHHHHHCS--EEEEESSSCEEEEECH
T ss_pred HHHHHCCCCEEEEECCCHHHHHHHCC--EEEEEECCEEEEECCH
T ss_conf 99986479689997499999999699--9999979999998699
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.81 E-value=1.9e-19 Score=145.17 Aligned_cols=159 Identities=15% Similarity=0.140 Sum_probs=115.7
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH--------------------HHHHCC-CCCCCCC---CCC
Q ss_conf 8201334422788888279999428997138886223489--------------------884408-6224654---443
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVG-ADVPAEI---FEI 1067 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~--------------------ilaq~G-~~VPa~~---~~~ 1067 (1288)
+..+.+||+|.+ .+|++++|+||||+|||||+|+|+++. -.++.| .++|... ..+
T Consensus 16 ~~~aL~~vs~~v-~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~l 94 (254)
T d1g6ha_ 16 EFKALDGVSISV-NKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 94 (254)
T ss_dssp TEEEEEEECCEE-ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGS
T ss_pred CEEEECCEEEEE-CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 968871217998-8997999999999849999999977976887379999996640569999983387257764247887
Q ss_pred CHHHHHH----------------------------------HHCCCHHHHHHCCCCHHHHH-HHHHHHHHHCCCCCEEEE
Q ss_conf 3188998----------------------------------73080226762001128999-999999993999949999
Q 000778 1068 SPVDRIF----------------------------------VRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVL 1112 (1288)
Q Consensus 1068 ~~~d~i~----------------------------------~rig~~d~i~~~~Stf~~em-~e~~~il~~a~~~sLvLl 1112 (1288)
++.+++. ..++..+......+.+++.+ ++++.+..++.+|.|+||
T Consensus 95 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llil 174 (254)
T d1g6ha_ 95 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVM 174 (254)
T ss_dssp BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 42321430133303450456654213532899999999998761963020595356991888899999999759272324
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCC
Q ss_conf 489999995889999999999997426948999918901366302898627856479970688
Q 000778 1113 DELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1113 DE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~ 1175 (1288)
|||++|.|+.....+. .++..+.++ ++++|++||+.+.+..+++ +|.+++.|.++..|+
T Consensus 175 DEPt~gLD~~~~~~i~-~~i~~l~~~-g~til~vsHdl~~~~~~~D--rv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 175 DEPIAGVAPGLAHDIF-NHVLELKAK-GITFLIIEHRLDIVLNYID--HLYVMFNGQIIAEGR 233 (254)
T ss_dssp ESTTTTCCHHHHHHHH-HHHHHHHHT-TCEEEEECSCCSTTGGGCS--EEEEEETTEEEEEEE
T ss_pred CCCCCCCCHHHHHHHH-HHHHHHHHC-CCEEEEEECCHHHHHHHCC--EEEEEECCEEEEEEC
T ss_conf 3976569999999999-999999978-9989999476999998699--999996998999966
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.81 E-value=1.1e-19 Score=146.73 Aligned_cols=175 Identities=14% Similarity=0.093 Sum_probs=124.5
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH-------------------
Q ss_conf 0898407977211246999820133442278888827999942899713888622348988-------------------
Q 000778 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------- 1053 (1288)
Q Consensus 993 ~i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~il------------------- 1053 (1288)
.|.+++..+-+-. +...+.+||+|.+ .+|++++|+|||||||||++|+|+++...
T Consensus 3 ~i~v~nlsk~y~~-----g~~~aL~~vsl~i-~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~ 76 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----GKVVALDNVNINI-ENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76 (242)
T ss_dssp CEEEEEEEEEEGG-----GTEEEEEEEEEEE-CTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEES
T ss_pred EEEEEEEEEEECC-----CCEEEEECEEEEE-CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHH
T ss_conf 8999757999889-----9989980407898-799899999899980999999997586888745999999951373111
Q ss_pred ----HHCCCCCCCCCC---CCCHHHHH---------------------HHHCCCHHHHHHCCCCHH-HHHHHHHHHHHHC
Q ss_conf ----440862246544---43318899---------------------873080226762001128-9999999999939
Q 000778 1054 ----AQVGADVPAEIF---EISPVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSA 1104 (1288)
Q Consensus 1054 ----aq~G~~VPa~~~---~~~~~d~i---------------------~~rig~~d~i~~~~Stf~-~em~e~~~il~~a 1104 (1288)
..--.||++..+ .+.+.+.| +..+|..+......+.++ ++.++++.+..++
T Consensus 77 ~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~ 156 (242)
T d1oxxk2 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALV 156 (242)
T ss_dssp SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred CCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 53120451477304334666657777665567613799999999999986659176664895459999985899875776
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCCC
Q ss_conf 999499994899999958899999999999974269489999189013663028986278564799706887
Q 000778 1105 TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1105 ~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~~ 1176 (1288)
.+|.++|+|||..|.|+.....+. .++..|.++.+.++|++||+.+++..+++ +|..++.|.++..|++
T Consensus 157 ~~P~llllDEPt~~LD~~~~~~i~-~~i~~l~~~~g~tvi~vTHd~~~~~~~~d--ri~vm~~G~iv~~g~~ 225 (242)
T d1oxxk2 157 KDPSLLLLDEPFSNLDARMRDSAR-ALVKEVQSRLGVTLLVVSHDPADIFAIAD--RVGVLVKGKLVQVGKP 225 (242)
T ss_dssp TCCSEEEEESTTTTSCGGGHHHHH-HHHHHHHHHHCCEEEEEESCHHHHHHHCS--EEEEEETTEEEEEECH
T ss_pred HCCCCEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCCEEEEEECCHHHHHHHCC--EEEEEECCEEEEECCH
T ss_conf 046614544786679989988998-99999986359879999799999999699--9999989999998699
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.81 E-value=4.2e-19 Score=142.91 Aligned_cols=156 Identities=12% Similarity=0.146 Sum_probs=111.7
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH------------------------HHHCCCCCCCCC---CC
Q ss_conf 013344227888882799994289971388862234898------------------------844086224654---44
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI------------------------LAQVGADVPAEI---FE 1066 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~i------------------------laq~G~~VPa~~---~~ 1066 (1288)
.+.+|++|.+ .+|++++|+|||||||||||++++++.- ..+.-.+|++.. ..
T Consensus 19 ~al~~isl~i-~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~ 97 (230)
T d1l2ta_ 19 YALKNVNLNI-KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL 97 (230)
T ss_dssp EEEEEEEEEE-CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT
T ss_pred EEEECEEEEE-CCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHHCCEEEEEECCHHHCCC
T ss_conf 9871337788-499799998899998216557506887777662699999857688555123125557788041241768
Q ss_pred CCHHHHH------------------------HHHCCCHHHH-HHCCCCHH-HHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 3318899------------------------8730802267-62001128-99999999999399994999948999999
Q 000778 1067 ISPVDRI------------------------FVRMGAKDHI-MAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1067 ~~~~d~i------------------------~~rig~~d~i-~~~~Stf~-~em~e~~~il~~a~~~sLvLlDE~grGTs 1120 (1288)
+.+.+.+ +..++..+.. ......++ ++.++++.+..++++|.++|+|||+.|.|
T Consensus 98 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD 177 (230)
T d1l2ta_ 98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177 (230)
T ss_dssp SCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 66888775788872247899999999999988762423455348802389999999998756522788899468765469
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECC
Q ss_conf 588999999999999742694899991890136630289862785647997068
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1121 ~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~ 1174 (1288)
+.....+ +.++..+.++.++++|++||+.+++. +++ +|..++.|.++.+|
T Consensus 178 ~~~~~~i-~~~l~~l~~~~g~tii~vTHd~~~a~-~~d--rv~~m~~G~Iv~~g 227 (230)
T d1l2ta_ 178 SKTGEKI-MQLLKKLNEEDGKTVVVVTHDINVAR-FGE--RIIYLKDGEVEREE 227 (230)
T ss_dssp HHHHHHH-HHHHHHHHHTTCCEEEEECSCHHHHT-TSS--EEEEEETTEEEEEE
T ss_pred HHHHHHH-HHHHHHHHHHHCCEEEEECCCHHHHH-HCC--EEEEEECCEEEEEC
T ss_conf 8999999-99999999843999999878889998-699--89999899999952
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.80 E-value=5.7e-19 Score=142.01 Aligned_cols=172 Identities=13% Similarity=0.123 Sum_probs=122.1
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH-------------------
Q ss_conf 0898407977211246999820133442278888827999942899713888622348988-------------------
Q 000778 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------- 1053 (1288)
Q Consensus 993 ~i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~il------------------- 1053 (1288)
.|++++...-+ ++..+.+||+|.+ ..|++++|+|||||||||++|+|+++.-.
T Consensus 2 ~Lev~nl~k~y-------g~~~al~~vs~~i-~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~ 73 (258)
T d1b0ua_ 2 KLHVIDLHKRY-------GGHEVLKGVSLQA-RAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 73 (258)
T ss_dssp CEEEEEEEEEE-------TTEEEEEEEEEEE-CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTT
T ss_pred EEEEEEEEEEE-------CCEEEECCEEEEE-CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCC
T ss_conf 69999789998-------9999881506688-699799999899982999999997476678997799999933677520
Q ss_pred --------------HHCCCCCCCCC---CCCCHHHH----------------------HHHHCCCHHHHHH-CCCCHHHH
Q ss_conf --------------44086224654---44331889----------------------9873080226762-00112899
Q 000778 1054 --------------AQVGADVPAEI---FEISPVDR----------------------IFVRMGAKDHIMA-GQSTFLTE 1093 (1288)
Q Consensus 1054 --------------aq~G~~VPa~~---~~~~~~d~----------------------i~~rig~~d~i~~-~~Stf~~e 1093 (1288)
.+--.+|++.. ..+.+.+. ++.+++..+.... ..+.+++.
T Consensus 74 ~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG 153 (258)
T d1b0ua_ 74 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGG 153 (258)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHH
T ss_pred HHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHH
T ss_conf 00023517679997454489983323141101021365657876299989999999999998299524430682205677
Q ss_pred -HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEE
Q ss_conf -9999999993999949999489999995889999999999997426948999918901366302898627856479970
Q 000778 1094 -LSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1094 -m~e~~~il~~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~ 1172 (1288)
+++++.+..++.+|.++|+|||++|.|+.....+. .++..+.++ +.++|++||+.+++..+++ +|.+++.|.++.
T Consensus 154 ~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~-~ll~~l~~~-g~til~vtHdl~~~~~~ad--ri~vm~~G~iv~ 229 (258)
T d1b0ua_ 154 QQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL-RIMQQLAEE-GKTMVVVTHEMGFARHVSS--HVIFLHQGKIEE 229 (258)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHT-TCCEEEECSCHHHHHHHCS--EEEEEETTEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHCCC-CCCEEEEECCHHHHHHHCC--EEEEEECCEEEE
T ss_conf 888989999984399878852455568878888998-765541036-8833899489999998699--999997999999
Q ss_pred CCCC
Q ss_conf 6887
Q 000778 1173 NGVG 1176 (1288)
Q Consensus 1173 ~~~~ 1176 (1288)
.|++
T Consensus 230 ~g~~ 233 (258)
T d1b0ua_ 230 EGDP 233 (258)
T ss_dssp EECH
T ss_pred ECCH
T ss_conf 8499
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.77 E-value=1e-18 Score=140.25 Aligned_cols=157 Identities=18% Similarity=0.167 Sum_probs=113.3
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH------------------HCCCCCCCCCC---CCCHHH
Q ss_conf 201334422788888279999428997138886223489884------------------40862246544---433188
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA------------------QVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~ila------------------q~G~~VPa~~~---~~~~~d 1071 (1288)
+|.. |++|.. . +++++|+|||||||||++|+|+++.-.. +.-.|||+..+ .+.+.+
T Consensus 13 ~~~~-~vs~~~-~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~e 89 (240)
T d2onka1 13 NFRL-NVDFEM-G-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp TEEE-EEEEEE-C-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred CEEE-EEEEEE-C-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHH
T ss_conf 9999-999974-9-979999979998099999999739998962899999998869989928522523144352201557
Q ss_pred H-------------------HHHHCCCHHHHHHCCCCHHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 9-------------------98730802267620011289-999999999939999499994899999958899999999
Q 000778 1072 R-------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1072 ~-------------------i~~rig~~d~i~~~~Stf~~-em~e~~~il~~a~~~sLvLlDE~grGTs~~Dg~aia~ai 1131 (1288)
. ++.++|..+......+.+++ +.++++.+..++.+|.++|+|||+.|.|+.....+. ..
T Consensus 90 nl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~-~~ 168 (240)
T d2onka1 90 NIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLM-EE 168 (240)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHH-HH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHH-HH
T ss_conf 66653233677889999999998638375665794448999989999987775167706752865558879999999-99
Q ss_pred HHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCC
Q ss_conf 99997426948999918901366302898627856479970688
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1132 le~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~ 1175 (1288)
+..+.++.+.+++++||+.+.+..+++ +|.+++.|.++..|+
T Consensus 169 i~~l~~~~g~tvi~vtHd~~~~~~~ad--ri~vm~~G~ii~~G~ 210 (240)
T d2onka1 169 LRFVQREFDVPILHVTHDLIEAAMLAD--EVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHTCCEEEEESCHHHHHHHCS--EEEEEETTEEEEEEC
T ss_pred HHHHHHHCCCEEEEEECCHHHHHHHCC--EEEEEECCEEEEEEC
T ss_conf 999987439769998189999999699--999998999999906
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=2.1e-18 Score=138.23 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=110.2
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC---------------------CCCCCCC---CCCC
Q ss_conf 201334422788888279999428997138886223489884408---------------------6224654---4433
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG---------------------ADVPAEI---FEIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G---------------------~~VPa~~---~~~~ 1068 (1288)
.+..++|+|.+ ..|++++|+||||+||||++++++++. ...| .|++... ....
T Consensus 12 ~~~l~~isl~I-~~Gei~~iiG~nGaGKSTLl~~l~Gl~--~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 12 STRLGPLSGEV-RAGEILHLVGPNGAGKSTLLARMAGMT--SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTTSCSEEEEE-ETTCEEECBCCTTSSHHHHHHHHHTSC--CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred CCEECCEEEEE-CCCCEEEEECCCCCCHHHHHHHHHCCC--CCCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCC
T ss_conf 71555888899-489899999899980999999994887--995599999999986998999864024512135774420
Q ss_pred ----------------HHHHHHHHCCCHHHHHHCCCCHHHHHH-HHHHHHHHCC-------CCCEEEEECCCCCCCHHHH
Q ss_conf ----------------188998730802267620011289999-9999999399-------9949999489999995889
Q 000778 1069 ----------------PVDRIFVRMGAKDHIMAGQSTFLTELS-ETALMLSSAT-------RNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1069 ----------------~~d~i~~rig~~d~i~~~~Stf~~em~-e~~~il~~a~-------~~sLvLlDE~grGTs~~Dg 1124 (1288)
.++.+...++..+.+....+.+++.++ +++.+..++. +|.|+|||||.+|.|+...
T Consensus 89 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~ 168 (231)
T d1l7vc_ 89 VWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQ 168 (231)
T ss_dssp HHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHH
T ss_conf 98876410014668999999998659876767684456998899999999998517133899889997187777898999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCC
Q ss_conf 999999999997426948999918901366302898627856479970688
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~ 1175 (1288)
. ..+.++..+.++ ++++|++||+.+.+..+++ ++.+++.|.++..|+
T Consensus 169 ~-~i~~~i~~l~~~-g~tii~vtHdl~~~~~~~d--ri~vl~~G~iv~~G~ 215 (231)
T d1l7vc_ 169 S-ALDKILSALCQQ-GLAIVMSSHDLNHTLRHAH--RAWLLKGGKMLASGR 215 (231)
T ss_dssp H-HHHHHHHHHHHT-TCEEEECCCCHHHHHHHCS--BCCBEETTEECCCSB
T ss_pred H-HHHHHHHHHHHC-CCEEEEEECCHHHHHHHCC--EEEEEECCEEEEECC
T ss_conf 9-999999999867-9999999677999999799--999997998999889
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.1e-17 Score=133.26 Aligned_cols=175 Identities=17% Similarity=0.121 Sum_probs=116.1
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH--------------------H
Q ss_conf 08984079772112469998201334422788888279999428997138886223489--------------------8
Q 000778 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------I 1052 (1288)
Q Consensus 993 ~i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~--------------------i 1052 (1288)
.|++++...-+-. ..+..+++|++|.+ .+|++++|+||||||||||++.|.++. .
T Consensus 11 ~I~~~nvsf~Y~~----~~~~~vL~~isl~i-~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 11 LVQFQDVSFAYPN----RPDVLVLQGLTFTL-RPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp CEEEEEEEECCTT----STTCCSEEEEEEEE-CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHH
T ss_pred EEEEEEEEEECCC----CCCCEEEECEEEEE-CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHH
T ss_conf 6999998998899----99997674438998-499899999999984999999986143787689988998531101378
Q ss_pred HHHCCCCCCCCCCC--CCHHHHHHH----------------HCCCHHHH-----------HHCCCCHH-HHHHHHHHHHH
Q ss_conf 84408622465444--331889987----------------30802267-----------62001128-99999999999
Q 000778 1053 LAQVGADVPAEIFE--ISPVDRIFV----------------RMGAKDHI-----------MAGQSTFL-TELSETALMLS 1102 (1288)
Q Consensus 1053 laq~G~~VPa~~~~--~~~~d~i~~----------------rig~~d~i-----------~~~~Stf~-~em~e~~~il~ 1102 (1288)
+.+.-.+||....- ..+.+.+.. ..+..+.+ ...-+.++ ++.++++.+..
T Consensus 86 ~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEEC
T ss_conf 88776540456500276346554542101302788999999998999998561211136751676689547048998604
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCCC
Q ss_conf 39999499994899999958899999999999974269489999189013663028986278564799706887
Q 000778 1103 SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1103 ~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~~ 1176 (1288)
++.+|.++|||||+.+.|+.....+. ..+..+.++.+.++|++||+.+++.. ++ +|.+++.|.++..|++
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~-~~l~~l~~~~~~Tvi~itH~l~~~~~-aD--rI~vl~~G~iv~~Gt~ 235 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVE-QLLYESPERYSRSVLLITQHLSLVEQ-AD--HILFLEGGAIREGGTH 235 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHH-HHHHTCGGGGGCEEEEECSCHHHHHT-CS--EEEEEETTEEEEEECH
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHCCCEEEEEECCHHHHHH-CC--EEEEEECCEEEEECCH
T ss_conf 45687078716757656853689999-99999765069899999597999985-99--9999989999998899
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=7e-17 Score=127.84 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=109.3
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH--------------------HHHCCCCCCCCCC--CCCH
Q ss_conf 82013344227888882799994289971388862234898--------------------8440862246544--4331
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF--EISP 1069 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~i--------------------laq~G~~VPa~~~--~~~~ 1069 (1288)
..+|+++|+|.+ .+|++++|+||||||||||+|.++++.- +.+.-+|||++.. ..++
T Consensus 15 ~~~vL~~isl~i-~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti 93 (241)
T d2pmka1 15 SPVILDNINLSI-KQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 93 (241)
T ss_dssp SCEEEEEEEEEE-ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBH
T ss_pred CCCEEEEEEEEE-CCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEEEEECCCCCCCCCC
T ss_conf 960374248998-4999999999999989999999973578888899999999440024655352889824465578400
Q ss_pred HHHHH---------------HHCCCHHHH-----------HHCCCCHH-HHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
Q ss_conf 88998---------------730802267-----------62001128-9999999999939999499994899999958
Q 000778 1070 VDRIF---------------VRMGAKDHI-----------MAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1070 ~d~i~---------------~rig~~d~i-----------~~~~Stf~-~em~e~~~il~~a~~~sLvLlDE~grGTs~~ 1122 (1288)
.+.|. ...+..+.+ ..+-+.++ ++.++++.+..++.+|.++|||||+.+.|+.
T Consensus 94 ~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~ 173 (241)
T d2pmka1 94 IDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173 (241)
T ss_dssp HHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHH
T ss_conf 03522357554388899999997557888763201344327878866988989875443444165135564776555989
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCCC
Q ss_conf 899999999999974269489999189013663028986278564799706887
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1123 Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~~ 1176 (1288)
....+. ..+..+. + +.++|++||+.+.+.. ++ +|.+++.|.++..|++
T Consensus 174 ~~~~i~-~~l~~l~-~-~~Tvi~itH~l~~~~~-~D--~i~vl~~G~Iv~~G~~ 221 (241)
T d2pmka1 174 SEHVIM-RNMHKIC-K-GRTVIIIAHRLSTVKN-AD--RIIVMEKGKIVEQGKH 221 (241)
T ss_dssp HHHHHH-HHHHHHH-T-TSEEEEECSSGGGGTT-SS--EEEEEETTEEEEEECH
T ss_pred HHHHHH-HHHHHHH-C-CCEEEEEECCHHHHHH-CC--EEEEEECCEEEEECCH
T ss_conf 999999-9999985-8-9989999788999984-99--9999989999998899
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.69 E-value=1.1e-16 Score=126.60 Aligned_cols=172 Identities=17% Similarity=0.152 Sum_probs=113.7
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH--------------------
Q ss_conf 089840797721124699982013344227888882799994289971388862234898--------------------
Q 000778 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------- 1052 (1288)
Q Consensus 993 ~i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~i-------------------- 1052 (1288)
.|++++...-+- .....++++|+|.+ .+|++++|+||||||||||++.++++.-
T Consensus 13 ~I~~~nvsf~Y~-----~~~~~~L~~isl~i-~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 13 DLEFRNVTFTYP-----GREVPALRNINLKI-PAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS 86 (253)
T ss_dssp CEEEEEEEECSS-----SSSCCSEEEEEEEE-CTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHH
T ss_pred EEEEEEEEEEEC-----CCCCCEEECEEEEE-CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHH
T ss_conf 799998899929-----99976353328998-599999999999985999999986216888468987880121110665
Q ss_pred HHHCCCCCCCCCCC--CCHHHHH-HH---------------HCCCHHHHHH---C--------CCCHH-HHHHHHHHHHH
Q ss_conf 84408622465444--3318899-87---------------3080226762---0--------01128-99999999999
Q 000778 1053 LAQVGADVPAEIFE--ISPVDRI-FV---------------RMGAKDHIMA---G--------QSTFL-TELSETALMLS 1102 (1288)
Q Consensus 1053 laq~G~~VPa~~~~--~~~~d~i-~~---------------rig~~d~i~~---~--------~Stf~-~em~e~~~il~ 1102 (1288)
+.+.-.|||....- ..+.+.+ +. ..+..+.+.. + -+.++ ++.++++.+..
T Consensus 87 ~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa 166 (253)
T d3b60a1 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 166 (253)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred HHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 42068799502544786202433205722089999999999981799997355441014348889849999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCCC
Q ss_conf 39999499994899999958899999999999974269489999189013663028986278564799706887
Q 000778 1103 SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1103 ~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~~ 1176 (1288)
++.+|.++|||||+.+.|+.....+. ..+..+. + +.|+|++||+.+.+.. ++ +|.+++.|.++..|++
T Consensus 167 l~~~p~ililDEpts~LD~~~~~~i~-~~l~~l~-~-~~Tvi~itH~l~~~~~-~D--~v~vl~~G~Iv~~G~~ 234 (253)
T d3b60a1 167 LLRDSPILILDEATSALDTESERAIQ-AALDELQ-K-NRTSLVIAHRLSTIEQ-AD--EIVVVEDGIIVERGTH 234 (253)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHH-HHHHHHH-T-TSEEEEECSCGGGTTT-CS--EEEEEETTEEEEEECH
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHC-C-CCEEEEEECCHHHHHH-CC--EEEEEECCEEEEECCH
T ss_conf 95499889951644458988999999-9998752-2-7889999887999985-99--9999989999998899
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.68 E-value=2.4e-17 Score=131.04 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=107.2
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH--------------------HHCCCCCCCCCC--CCCH
Q ss_conf 820133442278888827999942899713888622348988--------------------440862246544--4331
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF--EISP 1069 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~il--------------------aq~G~~VPa~~~--~~~~ 1069 (1288)
...|++||+|.+ .+|++++|+||||||||||++.++++.-. .+.-+|||.+.. .-++
T Consensus 14 ~~~vL~~isl~i-~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti 92 (242)
T d1mv5a_ 14 SEQILRDISFEA-QPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTI 92 (242)
T ss_dssp SSCSEEEEEEEE-CTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEH
T ss_pred CCCEEEEEEEEE-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEEECCCCCCCCCCH
T ss_conf 984142258998-5999999999999979999999999609898779889988442467888743679756654578534
Q ss_pred HHHHHH----------------HCCCHHH-----------HHHCCCCHH-HHHHHHHHHHHHCCCCCEEEEECCCCCCCH
Q ss_conf 889987----------------3080226-----------762001128-999999999993999949999489999995
Q 000778 1070 VDRIFV----------------RMGAKDH-----------IMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1070 ~d~i~~----------------rig~~d~-----------i~~~~Stf~-~em~e~~~il~~a~~~sLvLlDE~grGTs~ 1121 (1288)
.+.+.. ..+..+. +...-+.++ ++.++++.+..++.+|.++|||||+.+.|+
T Consensus 93 ~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~ 172 (242)
T d1mv5a_ 93 RENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDS 172 (242)
T ss_dssp HHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCS
T ss_pred HHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf 54301244555423567789999975554203742101523687898799999999999998529989996588655698
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCCC
Q ss_conf 8899999999999974269489999189013663028986278564799706887
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1122 ~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~~ 1176 (1288)
..... .+..+..+. + ++++|++||+.+.+.. ++ +|.+++.|.++..|++
T Consensus 173 ~~~~~-i~~~l~~l~-~-~~Tvi~itH~l~~~~~-~D--~i~vl~~G~iv~~G~~ 221 (242)
T d1mv5a_ 173 ESESM-VQKALDSLM-K-GRTTLVIAHRLSTIVD-AD--KIYFIEKGQITGSGKH 221 (242)
T ss_dssp SSCCH-HHHHHHHHH-T-TSEEEEECCSHHHHHH-CS--EEEEEETTEECCCSCH
T ss_pred HHHHH-HHHHHHHHC-C-CCEEEEEECCHHHHHH-CC--EEEEEECCEEEEECCH
T ss_conf 89999-988788871-7-9989999787999984-99--9999989999999999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=1.1e-16 Score=126.43 Aligned_cols=157 Identities=15% Similarity=0.115 Sum_probs=102.9
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC--------CCCCCCCCC--CCHHHHHH-------
Q ss_conf 8201334422788888279999428997138886223489884408--------622465444--33188998-------
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG--------ADVPAEIFE--ISPVDRIF------- 1074 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G--------~~VPa~~~~--~~~~d~i~------- 1074 (1288)
++.|++|++|.+ .+|++++|+||||||||||+|+|+++.- +..| .|+|....- ..+.+.+.
T Consensus 48 g~pvL~~isl~i-~~Ge~vaivG~nGsGKSTLl~~i~Gl~~-p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 125 (281)
T d1r0wa_ 48 GNPVLKNINLNI-EKGEMLAITGSTGSGKTSLLMLILGELE-ASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDE 125 (281)
T ss_dssp TCEEEEEEEEEE-CTTCEEEEEESTTSSHHHHHHHHHTSSC-CSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCCH
T ss_pred CCEEEECEEEEE-CCCCEEEEECCCCCHHHHHHHHHHCCCC-CCCCEEEECCEEEEEECCCCCCCCEEECCCCCCCCCCC
T ss_conf 976773759998-5999999998999829999999957974-78828999999999816430267603214203334560
Q ss_pred -------HHCCCHHHHH-----------HCCCCHH-HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf -------7308022676-----------2001128-99999999999399994999948999999588999999999999
Q 000778 1075 -------VRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHF 1135 (1288)
Q Consensus 1075 -------~rig~~d~i~-----------~~~Stf~-~em~e~~~il~~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L 1135 (1288)
......+.+. ....+++ ++.++++.+..++.+|.++|||||+.|.|+.....+...++..+
T Consensus 126 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~ 205 (281)
T d1r0wa_ 126 YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL 205 (281)
T ss_dssp HHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 57999999977699998461233235555423779999999999999986963513338554489899999999999886
Q ss_pred HHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCC
Q ss_conf 7426948999918901366302898627856479970688
Q 000778 1136 VHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1136 ~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~ 1175 (1288)
. .+.++|++||+.+... .++ +|.+++.|.++..|+
T Consensus 206 -~-~~~tvi~itH~~~~l~-~aD--rI~vl~~G~i~~~Gt 240 (281)
T d1r0wa_ 206 -M-ANKTRILVTSKMEHLR-KAD--KILILHQGSSYFYGT 240 (281)
T ss_dssp -T-TTSEEEEECSCHHHHH-TCS--EEEEEETTEEEEEEC
T ss_pred -H-CCCEEEEEECHHHHHH-HCC--EEEEEECCEEEEECC
T ss_conf -2-8999999925289998-599--999998999999878
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.67 E-value=4e-16 Score=122.71 Aligned_cols=172 Identities=16% Similarity=0.147 Sum_probs=113.6
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH--------------------H
Q ss_conf 08984079772112469998201334422788888279999428997138886223489--------------------8
Q 000778 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------I 1052 (1288)
Q Consensus 993 ~i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~--------------------i 1052 (1288)
.|++++...-+- .....|.+||+|.+ .+|++++|+||||||||||++.+.++. -
T Consensus 16 ~I~~~nvsf~Y~-----~~~~~vL~~isl~i-~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 16 RIDIDHVSFQYN-----DNEAPILKDINLSI-EKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 89 (255)
T ss_dssp CEEEEEEEECSC-----SSSCCSEEEEEEEE-CTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred EEEEEEEEEEEC-----CCCCCCEECEEEEE-CCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHH
T ss_conf 799998899959-----99976064438998-399899998899980999999997127863000153998753078888
Q ss_pred HHHCCCCCCCCC--CCCCHHHHH-HH--------------HCCCHHHHH-----------HCCCCHH-HHHHHHHHHHHH
Q ss_conf 844086224654--443318899-87--------------308022676-----------2001128-999999999993
Q 000778 1053 LAQVGADVPAEI--FEISPVDRI-FV--------------RMGAKDHIM-----------AGQSTFL-TELSETALMLSS 1103 (1288)
Q Consensus 1053 laq~G~~VPa~~--~~~~~~d~i-~~--------------rig~~d~i~-----------~~~Stf~-~em~e~~~il~~ 1103 (1288)
+.+.-.|||... ...++.++| |. ..+..+.+. ..-..++ ++.++++.+..+
T Consensus 90 lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal 169 (255)
T d2hyda1 90 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 169 (255)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred HHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 63414565101568998799998515867999999999999697999973624201033388898499999999999998
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCCC
Q ss_conf 9999499994899999958899999999999974269489999189013663028986278564799706887
Q 000778 1104 ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1104 a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~~ 1176 (1288)
+.+|.++|||||+.+.|+..... .+..+..+. + +.|+|++||+.+.+.. ++ +|.+++.|.++..|++
T Consensus 170 ~~~p~ililDEpts~LD~~t~~~-i~~~l~~l~-~-~~TvI~itH~~~~~~~-~D--~ii~l~~G~iv~~G~~ 236 (255)
T d2hyda1 170 LNNPPILILDEATSALDLESESI-IQEALDVLS-K-DRTTLIVAHRLSTITH-AD--KIVVIENGHIVETGTH 236 (255)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHH-HHHHHHHHT-T-TSEEEEECSSGGGTTT-CS--EEEEEETTEEEEEECH
T ss_pred HCCCCEEEEECCCCCCCHHHHHH-HHHHHHHHH-C-CCEEEEEECCHHHHHH-CC--EEEEEECCEEEEECCH
T ss_conf 55998999837654479779999-999999875-3-8889999689999985-99--9999989999998899
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.59 E-value=5.2e-15 Score=115.16 Aligned_cols=135 Identities=19% Similarity=0.161 Sum_probs=87.4
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH---------------HHCCCCCCCCC---CCCCHHHHH-
Q ss_conf 20133442278888827999942899713888622348988---------------44086224654---443318899-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------AQVGADVPAEI---FEISPVDRI- 1073 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~il---------------aq~G~~VPa~~---~~~~~~d~i- 1073 (1288)
..|.++++|.+ .+|++++|+||||+|||||+|+|+++.-. ...-.|+|... ..+.+.+.+
T Consensus 14 ~~vl~~is~~i-~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~ 92 (200)
T d1sgwa_ 14 KPVLERITMTI-EKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLK 92 (200)
T ss_dssp SEEEEEEEEEE-ETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHH
T ss_pred CEEEECEEEEE-CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEECCCCCCCCCHHHHHH
T ss_conf 92884208898-59989999999997199999999662056778899998962673670899950135788828999999
Q ss_pred ------------------HHHCCCHHHHHHCCCCHH-HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf ------------------873080226762001128-9999999999939999499994899999958899999999999
Q 000778 1074 ------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1074 ------------------~~rig~~d~i~~~~Stf~-~em~e~~~il~~a~~~sLvLlDE~grGTs~~Dg~aia~aile~ 1134 (1288)
+..++..+ +....+.++ ++.++++.+..++.+|.++|||||..|.|+.....+...+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~ 171 (200)
T d1sgwa_ 93 AVASLYGVKVNKNEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEI 171 (200)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99975488637999999998748856-30126868971888899999886499899986862016999999999999999
Q ss_pred HHHCCCCEEEEECCCC
Q ss_conf 9742694899991890
Q 000778 1135 FVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1135 L~~~~~~~~l~~TH~~ 1150 (1288)
. ++.+.++++++|+.
T Consensus 172 ~-~~~~~~ii~~~~~l 186 (200)
T d1sgwa_ 172 L-KEKGIVIISSREEL 186 (200)
T ss_dssp H-HHHSEEEEEESSCC
T ss_pred H-HCCCEEEEEEECHH
T ss_conf 8-67999999991625
|
| >d1ewqa3 c.55.6.1 (A:121-266) DNA repair protein MutS, domain II {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: DNA repair protein MutS, domain II family: DNA repair protein MutS, domain II domain: DNA repair protein MutS, domain II species: Thermus aquaticus [TaxId: 271]
Probab=99.59 E-value=9.6e-15 Score=113.36 Aligned_cols=145 Identities=25% Similarity=0.381 Sum_probs=93.6
Q ss_pred EEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 11156668999985899999468999888999889999997677819999972862056799998703962899259999
Q 000778 440 LTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANML 519 (1288)
Q Consensus 440 l~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~iGia~vD~stge~~l~qf~Dd~~~s~L~t~L~~l~P~EIi~~~~~l 519 (1288)
++|+.++. .++|||+||.+.. .||+||+|+|||+|.+.++.+. ..|...|.+++|+|||++.+..
T Consensus 1 l~ee~Ll~--~~nNyLaai~~~~----------~~giA~~DiSTGef~~~~~~~~---~~l~~~l~r~~P~Eil~~~~~~ 65 (146)
T d1ewqa3 1 LLQESLLP--REANYLAAIATGD----------GWGLAFLDVSTGEFKGTVLKSK---SALYDELFRHRPAEVLLAPELL 65 (146)
T ss_dssp CCCGGGSC--SSCCCEEEEEESS----------SEEEEEEETTTTEEEEEEESSH---HHHHHHHHHHCCSEEEECHHHH
T ss_pred CCCCCCCC--CCCCEEEEEEECC----------CEEEEEEECCCCEEEEEEECCH---HHHHHHHHCCCCCEEEECCCCC
T ss_conf 96544366--7674799999789----------7689999866881899981466---6689999717984898774224
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 94789999850388731234678545673566999999972101222122242222434568998665113464310599
Q 000778 520 SPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGD 599 (1288)
Q Consensus 520 s~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~ 599 (1288)
.. .++ ...+...+...... .... ..+.
T Consensus 66 ~~----------------------~~~-----~~~~~~~~~~~~~~-----------~~~~---------------~~~~ 92 (146)
T d1ewqa3 66 EN----------------------GAF-----LDEFRKRFPVMLSE-----------APFE---------------PEGE 92 (146)
T ss_dssp HC----------------------HHH-----HHHHHHHCCSEEEC-----------CCCC---------------CCSS
T ss_pred CC----------------------HHH-----HHHHHHHHHHHHCC-----------CCCC---------------CCCC
T ss_conf 22----------------------567-----99998754332100-----------1136---------------5665
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEECCCCCCCCCCCCCCEECCHHHHHHCCCCCC
Q ss_conf 805899999999999999614100101234000478887667988906509988985024434
Q 000778 600 SGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFEN 662 (1288)
Q Consensus 600 ~~~~al~Algall~YL~~~~~~~~ll~~~~f~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~n 662 (1288)
....+.+|+|+++.|++..+.. .+ ++..++. ....++|.||.+|++||||+++
T Consensus 93 ~~~~~~~a~gall~Yl~~tq~~-~l-hl~~~~~--------~~~~~~l~iD~~T~rnLEL~~t 145 (146)
T d1ewqa3 93 GPLALRRARGALLAYAQRTQGG-AL-SLQPFRF--------YDPGAFMRLPEATLRALEVFEP 145 (146)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTS-CC-CCCCCEE--------CCGGGSCBCCHHHHHHTTSSSC
T ss_pred CCHHHHHHHHHHHHHHHHHCCC-CC-CCCCCEE--------ECCCCEEEECHHHHHHHCCCCC
T ss_conf 4388999999999999984679-87-8899889--------8899989868889987477778
|
| >d1wb9a3 c.55.6.1 (A:117-269) DNA repair protein MutS, domain II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: DNA repair protein MutS, domain II family: DNA repair protein MutS, domain II domain: DNA repair protein MutS, domain II species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=9.4e-14 Score=106.66 Aligned_cols=153 Identities=18% Similarity=0.300 Sum_probs=100.1
Q ss_pred CCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCC
Q ss_conf 61111566689999858999994689998889998899999976778199999728620567999987039628992599
Q 000778 438 GTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPAN 517 (1288)
Q Consensus 438 GTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~iGia~vD~stge~~l~qf~Dd~~~s~L~t~L~~l~P~EIi~~~~ 517 (1288)
||++|+.+|... .+|||+||.... ..||+||+|+|||+|.+.++.+ ...|...|.+++|+|||++.+
T Consensus 1 GT~~d~~~L~~~-~nnyL~ai~~~~---------~~~gla~~DiSTG~f~~~~~~~---~~~l~~~l~r~~P~Eil~~~~ 67 (153)
T d1wb9a3 1 GTISDEALLQER-QDNLLAAIWQDS---------KGFGYATLDISSGRFRLSEPAD---RETMAAELQRTNPAELLYAED 67 (153)
T ss_dssp TTCCCGGGSCTT-SCCCEEEEEECS---------SCEEEEEECTTTCCEEEECCCS---HHHHHHHHHHHCCSEEEEETT
T ss_pred CCCCCCCCCCCC-CCCEEEEEEECC---------CEEEEEEEECCCCEEEEEECCC---HHHHHHHHHHCCCCCCCCCCC
T ss_conf 963560314799-862899999779---------8478999971455799997178---888999998209865011454
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 99947899998503887312346785456735669999999721012221222422224345689986651134643105
Q 000778 518 MLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELIST 597 (1288)
Q Consensus 518 ~ls~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~ 597 (1288)
...... .. .. ..+ ...+ .++|+...+.+.|...|+..+- .+.+.
T Consensus 68 ~~~~~~----~~-~~-~~~-~~~~-~~~f~~~~~~~~l~~~f~~~~l---------------~~~g~------------- 111 (153)
T d1wb9a3 68 FAEMSL----IE-GR-RGL-RRRP-LWEFEIDTARQQLNLQFGTRDL---------------VGFGV------------- 111 (153)
T ss_dssp CCCGGG----TT-TC-SSE-EEEC-GGGGCHHHHHHHHHHHHTCSCS---------------GGGTC-------------
T ss_pred CHHHHH----HH-HC-CCC-CCCC-CCCCCHHHHHHHHHHHCCCCCC---------------CCCCC-------------
T ss_conf 212567----75-33-555-3166-5213517799999987187765---------------43211-------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEECCCCCCCCCCCCCCEEC
Q ss_conf 9980589999999999999961410010123400047888766798890650
Q 000778 598 GDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVL 649 (1288)
Q Consensus 598 ~~~~~~al~Algall~YL~~~~~~~~ll~~~~f~~~~~~~~~~~~~~~~M~L 649 (1288)
+....+++|+|++|.||+.++.. .+.+...+..+ ..+++|+|
T Consensus 112 -~~~~~~~~A~gaLL~Yl~~tq~~-~l~hl~~~~~~--------~~~~~m~L 153 (153)
T d1wb9a3 112 -ENAPRGLCAAGCLLQYAKDTQRT-TLPHIRSITME--------REQDSIIM 153 (153)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHCS-CCTTCCCCEEC--------CGGGBCEE
T ss_pred -CCCHHHHHHHHHHHHHHHHHHCC-CCCCCCCCEEE--------CCCCEEEC
T ss_conf -13657999999999999998054-62027988687--------87788889
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.80 E-value=2e-09 Score=77.36 Aligned_cols=119 Identities=14% Similarity=0.173 Sum_probs=63.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-----CCCC------------HHHH------HHHHCCCHHHHHHC
Q ss_conf 99994289971388862234898844086224654-----4433------------1889------98730802267620
Q 000778 1030 ILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-----FEIS------------PVDR------IFVRMGAKDHIMAG 1086 (1288)
Q Consensus 1030 ~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~-----~~~~------------~~d~------i~~rig~~d~i~~~ 1086 (1288)
++||||||+|||||+|.|++..-....|.++.... ...+ .... .+.+++......
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 80 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYF-- 80 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHH--
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH--
T ss_conf 999989993899999999814888864699877132888876531123366777887541134554430230376256--
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
Q ss_conf 01128999999999993999949999489999995889999999999997426948999918901366
Q 000778 1087 QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAV 1154 (1288)
Q Consensus 1087 ~Stf~~em~e~~~il~~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~ 1154 (1288)
.....+....+........+.++++||+|.. ..+......++.+.+ +..++++++++|......
T Consensus 81 -~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l-~~~~~~il~~~h~~~~~~ 144 (178)
T d1ye8a1 81 -EELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIM-HDPNVNVVATIPIRDVHP 144 (178)
T ss_dssp -HHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHH-TCTTSEEEEECCSSCCSH
T ss_pred -HHHHHHHHHHHHHHHHHCCCCCEEECCCCCC--CHHHHHHHHHHHHHH-CCCCCEEEEEECCHHHHH
T ss_conf -6532013789999997409974230277731--004579999999875-057978999974477898
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.64 E-value=0.00037 Score=41.64 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=37.2
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
Q ss_conf 9399994999948999999588999999999999742694899991890136630
Q 000778 1102 SSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDY 1156 (1288)
Q Consensus 1102 ~~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~ 1156 (1288)
.....++++++|||-.+.++.--..++ ..++.+.+ +.-+|++||.+.+...+
T Consensus 237 ~~~~~~~~~~iDEpe~~Lhp~~~~~l~-~~l~~~~~--~~QviitTHsp~~~~~~ 288 (308)
T d1e69a_ 237 MEIKPSPFYVLDEVDSPLDDYNAERFK-RLLKENSK--HTQFIVITHNKIVMEAA 288 (308)
T ss_dssp TTTSCCSEEEEESCCSSCCHHHHHHHH-HHHHHHTT--TSEEEEECCCTTGGGGC
T ss_pred HHHCCCCHHHHHHCCCCCCHHHHHHHH-HHHHHHCC--CCEEEEEECCHHHHHHC
T ss_conf 542267445543203357978999999-99998554--88799998988999732
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.22 E-value=0.0023 Score=36.29 Aligned_cols=135 Identities=21% Similarity=0.199 Sum_probs=68.7
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCHHHHHHH---HCCCH--H------
Q ss_conf 334422788888279999428997138886223489884408622---465444331889987---30802--2------
Q 000778 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV---PAEIFEISPVDRIFV---RMGAK--D------ 1081 (1288)
Q Consensus 1016 ~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~V---Pa~~~~~~~~d~i~~---rig~~--d------ 1081 (1288)
+++...+. .+|++++|+|+.|+||||++.+++..... ..|..| ..+...-.+..++.+ .+... +
T Consensus 25 lD~~~~G~-~~G~l~vi~G~~G~GKT~~~~~la~~~a~-~~g~~v~~~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 102 (277)
T d1cr2a_ 25 INDKTLGA-RGGEVIMVTSGSGMGKSTFVRQQALQWGT-AMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREI 102 (277)
T ss_dssp HHHHHCSB-CTTCEEEEECSTTSSHHHHHHHHHHHHHH-TSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHH
T ss_pred HHHHHCCC-CCCEEEEEEECCCCCHHHHHHHHHHHHHH-HCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHCCCCCCH
T ss_conf 88874697-89808999947999799999999972655-33663457640111135776999986458710101222221
Q ss_pred -------HHHH-------------CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC---CHHHH-HHH--HHHHHHHH
Q ss_conf -------6762-------------0011289999999999939999499994899999---95889-999--99999999
Q 000778 1082 -------HIMA-------------GQSTFLTELSETALMLSSATRNSLVVLDELGRGT---STSDG-QAI--AESVLEHF 1135 (1288)
Q Consensus 1082 -------~i~~-------------~~Stf~~em~e~~~il~~a~~~sLvLlDE~grGT---s~~Dg-~ai--a~aile~L 1135 (1288)
.... ..+....++...........++.+|++|=+..-. ...+. ..+ ...-+..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~l 182 (277)
T d1cr2a_ 103 IENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGF 182 (277)
T ss_dssp HHTSHHHHHHHHHHSSSCEEEECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEEEC----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 45677888988740352146621433106899999865432136762599705421203465443067789999999997
Q ss_pred HHCCCCEEEEECCCCHH
Q ss_conf 74269489999189013
Q 000778 1136 VHKVQCRGLFSTHYHRL 1152 (1288)
Q Consensus 1136 ~~~~~~~~l~~TH~~~l 1152 (1288)
+.+.+|.+++++|....
T Consensus 183 A~~~~i~vi~~~q~~r~ 199 (277)
T d1cr2a_ 183 AKSTGVVLVVICHLKNP 199 (277)
T ss_dssp HHHHCCEEEEEEECC--
T ss_pred HHHCCCCCEEECCCCCC
T ss_conf 65016552031035632
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.20 E-value=0.0012 Score=38.13 Aligned_cols=122 Identities=13% Similarity=0.076 Sum_probs=65.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCHHHHH--HHH-CCCHHHHHHCCCCHHHHHHHHHH
Q ss_conf 88279999428997138886223489884408---6224654443318899--873-08022676200112899999999
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRI--FVR-MGAKDHIMAGQSTFLTELSETAL 1099 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G---~~VPa~~~~~~~~d~i--~~r-ig~~d~i~~~~Stf~~em~e~~~ 1099 (1288)
+.++++++||||+||||.+--+|. .+...| ..+.++..+.+-.+++ |++ ++..-......+ -.......+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~--~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~-~~~~~~~~~~ 85 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGE-SPESIRRRVE 85 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH--HHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTC-CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH--HHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHHH
T ss_conf 986899989999988999999999--9997799279995443464088889999986288631112442-0367888898
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC-CEEEEECCCCH
Q ss_conf 99939999499994899999958899999999999974269-48999918901
Q 000778 1100 MLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQ-CRGLFSTHYHR 1151 (1288)
Q Consensus 1100 il~~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~-~~~l~~TH~~~ 1151 (1288)
.+.......+||+|-+||+-...+-..-...+.+.. .... ..++-++.-.+
T Consensus 86 ~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~-~~~~~llv~~a~~~~~ 137 (207)
T d1ls1a2 86 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL-GPDEVLLVLDAMTGQE 137 (207)
T ss_dssp HHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH-CCSEEEEEEEGGGTHH
T ss_pred HHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCHH
T ss_conf 887633676403345442000036688999998631-8736999843455616
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=97.18 E-value=0.0031 Score=35.41 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=70.5
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHCCCH-HHHHHCCCCHHHHHHHHHHHH
Q ss_conf 888279999428997138886223489884408--62246544433188998730802-267620011289999999999
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQVG--ADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTELSETALML 1101 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G--~~VPa~~~~~~~~d~i~~rig~~-d~i~~~~Stf~~em~e~~~il 1101 (1288)
..|.++.|.||.++||||++-+++..+. .+-+ .|+-.+.. +. ...+.++|.. |++.--..+...+..++...+
T Consensus 52 ~~g~itei~G~~gsGKTtl~l~~~~~~q-~~g~~~vyidtE~~-~~--~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l 127 (263)
T d1u94a1 52 PMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHA-LD--PIYARKLGVDIDNLLCSQPDTGEQALEICDAL 127 (263)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEESSCC-CC--HHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCC-CC--HHHHHHHCCCHHHEEEECCCCHHHHHHHHHHH
T ss_conf 6735899805777478999999999987-08987999865445-48--99999839987997996289899999999999
Q ss_pred HHCCCCCEEEEECCCCCCCH-------HHH-----H-HHHH--HHHHHHHHCCCCEEEEECCCCHH
Q ss_conf 93999949999489999995-------889-----9-9999--99999974269489999189013
Q 000778 1102 SSATRNSLVVLDELGRGTST-------SDG-----Q-AIAE--SVLEHFVHKVQCRGLFSTHYHRL 1152 (1288)
Q Consensus 1102 ~~a~~~sLvLlDE~grGTs~-------~Dg-----~-aia~--aile~L~~~~~~~~l~~TH~~~l 1152 (1288)
....+..||++|-.+.-... .|+ . .+.. ..+..++...++.++++.|-..-
T Consensus 128 ~~~~~~~liViDSi~al~~~~e~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~~~~~vi~~NQv~~~ 193 (263)
T d1u94a1 128 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 193 (263)
T ss_dssp HHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----
T ss_pred HHCCCCCEEEEECCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC
T ss_conf 854999899998865566602102652310478999999999999987662058169998789961
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.18 E-value=0.0038 Score=34.83 Aligned_cols=108 Identities=18% Similarity=0.204 Sum_probs=60.7
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCC---CCCCCCCCCCHHHHHH--H-HCCCHHHHHHCCCCHHHHHHHHH
Q ss_conf 8882799994289971388862234898844086---2246544433188998--7-30802267620011289999999
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA---DVPAEIFEISPVDRIF--V-RMGAKDHIMAGQSTFLTELSETA 1098 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~---~VPa~~~~~~~~d~i~--~-rig~~d~i~~~~Stf~~em~e~~ 1098 (1288)
....+++++||||+||||.+==+|- .+...|. .+-+...+.+-++++- + .++..=......+.. ....+..
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa--~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~-~~~~~~~ 85 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAK--MFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADP-AAVAFDA 85 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCH-HHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHH
T ss_conf 9998999989999988999999999--999779906999601334204678887764327641036777768-9987887
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999399994999948999999588999999999999
Q 000778 1099 LMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHF 1135 (1288)
Q Consensus 1099 ~il~~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L 1135 (1288)
..+....+..+||+|-+||+-...+-..-...+.+..
T Consensus 86 ~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~ 122 (213)
T d1vmaa2 86 VAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVV 122 (213)
T ss_dssp HHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8999876999899824553301688889988887664
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.02 E-value=0.0032 Score=35.30 Aligned_cols=126 Identities=12% Similarity=0.061 Sum_probs=65.5
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCHHHHH--HHH-CCCHHHHHHCCCCHHHHHHHHH
Q ss_conf 888279999428997138886223489884408---6224654443318899--873-0802267620011289999999
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRI--FVR-MGAKDHIMAGQSTFLTELSETA 1098 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G---~~VPa~~~~~~~~d~i--~~r-ig~~d~i~~~~Stf~~em~e~~ 1098 (1288)
.++.+++++||+|+||||.+==+|. .+...| ..+.+...+.+-++++ |++ ++..-......+.......+..
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~--~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~ 81 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGR--YYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAV 81 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHHCCCCEEEEEECCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 9977999989999988999999999--99977990799981366654026676405456823896167742788999989
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH---CCC---CEEEEECCCCHHH
Q ss_conf 999939999499994899999958899999999999974---269---4899991890136
Q 000778 1099 LMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVH---KVQ---CRGLFSTHYHRLA 1153 (1288)
Q Consensus 1099 ~il~~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~---~~~---~~~l~~TH~~~l~ 1153 (1288)
.........+||+|-+||+-...+-..-...+.+.+.. ... ..++=+|...+-.
T Consensus 82 -~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~ 141 (207)
T d1okkd2 82 -QAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL 141 (207)
T ss_dssp -HHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH
T ss_pred -HHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHH
T ss_conf -999987999997175222311277888877777776532567873599996200471678
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.004 Score=34.69 Aligned_cols=122 Identities=20% Similarity=0.180 Sum_probs=60.6
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC---CCCC-------CCCCHHHHHHHHC-------CCHHHHH--HC
Q ss_conf 88279999428997138886223489884408622---4654-------4433188998730-------8022676--20
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV---PAEI-------FEISPVDRIFVRM-------GAKDHIM--AG 1086 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~V---Pa~~-------~~~~~~d~i~~ri-------g~~d~i~--~~ 1086 (1288)
.|.+.+|+|+.|.|||||+-+++.. +|..+.+. +... ...+ .+.+..|+ +...... ..
T Consensus 28 pg~~~~i~G~~G~GKS~l~l~la~~--ia~g~~~~~~~~~~~~~vl~~~~E~~-~~~~~~Rl~~~~~~~~~~~~~~~~~~ 104 (274)
T d1nlfa_ 28 AGTVGALVSPGGAGKSMLALQLAAQ--IAGGPDLLEVGELPTGPVIYLPAEDP-PTAIHHRLHALGAHLSAEERQAVADG 104 (274)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHTCCCTTCCCCCCCCCEEEEESSSC-HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHH--HHCCCCCCCCCCCCCCCEEEEECCCH-HHHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 8958999928999899999999999--97699721112357873689851234-99999999998623686665312333
Q ss_pred C-------C-CHHHHHHHHHHHHHHCCCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCH
Q ss_conf 0-------1-128999999999993999949999489999-----995889999999999997426948999918901
Q 000778 1087 Q-------S-TFLTELSETALMLSSATRNSLVVLDELGRG-----TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHR 1151 (1288)
Q Consensus 1087 ~-------S-tf~~em~e~~~il~~a~~~sLvLlDE~grG-----Ts~~Dg~aia~aile~L~~~~~~~~l~~TH~~~ 1151 (1288)
. + ...........+......+.+|++|-+..- .+..+...+. .-+..++...+|+++++.|..-
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~-~~l~~la~~~~~~vi~v~H~~K 181 (274)
T d1nlfa_ 105 LLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI-GRMEAIAADTGCSIVFLHHASK 181 (274)
T ss_dssp EEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH-HHHHHHHHHHCCEEEEEEEC--
T ss_pred CEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHCCCCCCCHHHHHHHH-HHHHHHHHCCCCCEEHHHHCCC
T ss_conf 2321456742035789999998875267658962813542266523225689999-8877776447975401310055
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.0048 Score=34.12 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=58.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCHHHHH--HH-HCCCHHHHHHCCCCHHHHHHHHH
Q ss_conf 888279999428997138886223489884408---6224654443318899--87-30802267620011289999999
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRI--FV-RMGAKDHIMAGQSTFLTELSETA 1098 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G---~~VPa~~~~~~~~d~i--~~-rig~~d~i~~~~Stf~~em~e~~ 1098 (1288)
....+++++||||+||||.+==+|. .+...| +.+.+...+.+-++++ |+ +++..-...........-+.+..
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~--~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~ 84 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLAR--QFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAI 84 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHH--HHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9997999989999998999999999--99977994799823213666120455543433886211356877999999999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999399994999948999999588999999999999
Q 000778 1099 LMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHF 1135 (1288)
Q Consensus 1099 ~il~~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L 1135 (1288)
.. .......+||+|-+||+-...+...-...+.+.+
T Consensus 85 ~~-a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~ 120 (211)
T d2qy9a2 85 QA-AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVM 120 (211)
T ss_dssp HH-HHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHH
T ss_pred HH-HHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99-9876998899656887632077899999999998
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.80 E-value=0.012 Score=31.54 Aligned_cols=125 Identities=19% Similarity=0.238 Sum_probs=70.8
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHCCCHH-HHHHCCCCHHHHHHHHHHHH
Q ss_conf 888279999428997138886223489884408--622465444331889987308022-67620011289999999999
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQVG--ADVPAEIFEISPVDRIFVRMGAKD-HIMAGQSTFLTELSETALML 1101 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G--~~VPa~~~~~~~~d~i~~rig~~d-~i~~~~Stf~~em~e~~~il 1101 (1288)
..|+++.|.||.++|||+++-+++.... .+-| .|+-.+. .+.+ .++.++|... ++.--......+..++...+
T Consensus 55 p~g~itei~G~~~sGKT~l~l~~~~~aq-k~g~~v~yiDtE~-~~~~--~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l 130 (268)
T d1xp8a1 55 PRGRITEIYGPESGGKTTLALAIVAQAQ-KAGGTCAFIDAEH-ALDP--VYARALGVNTDELLVSQPDNGEQALEIMELL 130 (268)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEESSC-CCCH--HHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEECCC-CCCH--HHHHHHCCCCHHEEEECCCCHHHHHHHHHHH
T ss_conf 6754789805876522799999999997-0799899998876-5899--9999828981237997489999999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHH-------H-----HHHHHH---HHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf 939999499994899999958-------8-----999999---999999742694899991890136
Q 000778 1102 SSATRNSLVVLDELGRGTSTS-------D-----GQAIAE---SVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1102 ~~a~~~sLvLlDE~grGTs~~-------D-----g~aia~---aile~L~~~~~~~~l~~TH~~~l~ 1153 (1288)
....+..|||+|-.+.--.-. + ...+.. -.+..++...++.++++.|...-.
T Consensus 131 ~~~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~~~~~vi~tNQv~~~~ 197 (268)
T d1xp8a1 131 VRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKI 197 (268)
T ss_dssp HTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC----
T ss_pred HHCCCCCEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC
T ss_conf 8658971999945454553888716534105779999999999997766643297699996786026
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.72 E-value=0.0078 Score=32.71 Aligned_cols=123 Identities=18% Similarity=0.161 Sum_probs=62.4
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCHHHHHHHHCCCH--HHHHHCC---------CCH
Q ss_conf 888279999428997138886223489884408---62246544433188998730802--2676200---------112
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFVRMGAK--DHIMAGQ---------STF 1090 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G---~~VPa~~~~~~~~d~i~~rig~~--d~i~~~~---------Stf 1090 (1288)
..|.+++|.||.|+|||+++-+++... +..| +|+..+.....+. +.+.+++.. ..+..+. ...
T Consensus 24 ~~gsl~li~G~pGsGKT~l~~qia~~~--~~~~~~~~~is~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (242)
T d1tf7a2 24 FKDSIILATGATGTGKTLLVSRFVENA--CANKERAILFAYEESRAQLL-RNAYSWGMDFEEMERQNLLKIVCAYPESAG 100 (242)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEESSSCHHHHH-HHHHTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH--HHHCCCCCEEECCCCHHHHH-HHHHHCCCCHHHHHHCCCEEEEEEECCHHH
T ss_conf 698499999189999999999999999--87232441121267999999-999982998699854586179973000101
Q ss_pred HHHHH-HHHHHHHHCCCCCEEEEECCC---CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf 89999-999999939999499994899---999958899999999999974269489999189013
Q 000778 1091 LTELS-ETALMLSSATRNSLVVLDELG---RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRL 1152 (1288)
Q Consensus 1091 ~~em~-e~~~il~~a~~~sLvLlDE~g---rGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l 1152 (1288)
..+.. .+...+ ....+.++++|-+. .+.+...-......+. .++++.+++++++.|-+..
T Consensus 101 ~~~~~~~i~~~i-~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~i~~~~~~~~ 164 (242)
T d1tf7a2 101 LEDHLQIIKSEI-NDFKPARIAIDSLSALARGVSNNAFRQFVIGVT-GYAKQEEITGLFTNTSDQF 164 (242)
T ss_dssp HHHHHHHHHHHH-HTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHH-HHHHHTTCEEEEEEECSSS
T ss_pred HHHHHHHHHHHH-HHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHH-HHHHHCCCEEEEEEEEEEE
T ss_conf 799999999999-840885332204314304899999999999999-9999869839999856751
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.59 E-value=0.0085 Score=32.42 Aligned_cols=110 Identities=13% Similarity=0.134 Sum_probs=54.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 88279999428997138886223489884408622465444331889987308022676200112899999999999399
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSAT 1105 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~~d~i~~~~Stf~~em~e~~~il~~a~ 1105 (1288)
....++|.||.|+|||++++.+|.. .|..+ ..+.. ..+.+.. ..+. ....+...-.....
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~-----~~~~~----~~~~~-~~l~~~~-~~~~---------~~~l~~~f~~A~~~ 99 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANE-----CQANF----ISIKG-PELLTMW-FGES---------EANVREIFDKARQA 99 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHH-----TTCEE----EEECH-HHHHTSC-TTTH---------HHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-----HCCCE----EEEEH-HHHHHCC-CCCH---------HHHHHHHHHHHHHC
T ss_conf 8875788789987630477887877-----18947----99887-9952531-6515---------89999999999863
Q ss_pred CCCEEEEECCCCCCC---------HHHHHHHHHHHHHHH---HHCCCCEEEEECCCCHHHHH
Q ss_conf 994999948999999---------588999999999999---74269489999189013663
Q 000778 1106 RNSLVVLDELGRGTS---------TSDGQAIAESVLEHF---VHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1106 ~~sLvLlDE~grGTs---------~~Dg~aia~aile~L---~~~~~~~~l~~TH~~~l~~~ 1155 (1288)
.|++|++||+-.=.. ......+...++..+ ....+..+|.+|++.+....
T Consensus 100 ~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~ 161 (265)
T d1r7ra3 100 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 161 (265)
T ss_dssp CSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTTSC
T ss_pred CCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCH
T ss_conf 98435687546324557876788737999999999999628677799899991799222799
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.43 E-value=0.02 Score=29.91 Aligned_cols=93 Identities=15% Similarity=0.223 Sum_probs=53.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCHHHHHHH---HCCCHHHHHHCCCCHHHHHHHHHH
Q ss_conf 88279999428997138886223489884408---622465444331889987---308022676200112899999999
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFV---RMGAKDHIMAGQSTFLTELSETAL 1099 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G---~~VPa~~~~~~~~d~i~~---rig~~d~i~~~~Stf~~em~e~~~ 1099 (1288)
...+++++||+|+||||.+==+|. .+.+.| .++-+...+.+-++++-+ .+|..-............+.+. .
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~--~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a-~ 87 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAY--FYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRG-V 87 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHH--HHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHH-H
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHH-H
T ss_conf 998999989999998999999999--9997799369997202355156789874014684223024410244789999-9
Q ss_pred HHHHCCCCCEEEEECCCCCCCH
Q ss_conf 9993999949999489999995
Q 000778 1100 MLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1100 il~~a~~~sLvLlDE~grGTs~ 1121 (1288)
......+..+||+|-+||.-..
T Consensus 88 ~~~~~~~~d~IlIDTaGr~~~~ 109 (211)
T d1j8yf2 88 EKFLSEKMEIIIVDTAGRHGYG 109 (211)
T ss_dssp HHHHHTTCSEEEEECCCSCCTT
T ss_pred HHHHCCCCCEEEEECCCCCCCC
T ss_conf 8740267736998537767631
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.40 E-value=0.021 Score=29.78 Aligned_cols=125 Identities=20% Similarity=0.267 Sum_probs=70.6
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHCCCH-HHHHHCCCCHHHHHHHHHHHH
Q ss_conf 888279999428997138886223489884408--62246544433188998730802-267620011289999999999
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQVG--ADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTELSETALML 1101 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G--~~VPa~~~~~~~~d~i~~rig~~-d~i~~~~Stf~~em~e~~~il 1101 (1288)
..|++..|.||+++||||++-+++..+. .+-| .|+-.+. .+.. .-+.++|.. +++.--..+...++.++..-+
T Consensus 58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q-~~g~~~vyIDtE~-~~~~--e~a~~~GvD~d~il~~~~~~~E~~~~~~~~l 133 (269)
T d1mo6a1 58 PRGRVIEIYGPESSGKTTVALHAVANAQ-AAGGVAAFIDAEH-ALDP--DYAKKLGVDTDSLLVSQPDTGEQALEIADML 133 (269)
T ss_dssp CSSSEEEEECSSSSSHHHHHHHHHHHHH-HTTCEEEEEESSC-CCCH--HHHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCC-CCCH--HHHHHHCCCHHHEEEECCCCHHHHHHHHHHH
T ss_conf 6633699964887488999999999875-4898899998976-6799--9999809988995896699899999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHH--H----------HHHHHHHH---HHHHHCCCCEEEEECCCCHHH
Q ss_conf 9399994999948999999588--9----------99999999---999742694899991890136
Q 000778 1102 SSATRNSLVVLDELGRGTSTSD--G----------QAIAESVL---EHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1102 ~~a~~~sLvLlDE~grGTs~~D--g----------~aia~ail---e~L~~~~~~~~l~~TH~~~l~ 1153 (1288)
....+..|||+|-.+.-..-.+ + +.+....+ ..+....++.++++.|-..-.
T Consensus 134 ~~~~~~~liIiDSi~al~~~~E~e~~~~~~~~~~~a~~l~~~l~~l~~~~~~~~~~vi~~NQv~~~~ 200 (269)
T d1mo6a1 134 IRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKI 200 (269)
T ss_dssp HHTTCEEEEEEECSTTCCCHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECC----
T ss_pred HHCCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEECCC
T ss_conf 8559987899933024560888605403232889999999999999998762371655332000147
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.39 E-value=0.021 Score=29.74 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=55.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 82799994289971388862234898844086224654443318899873080226762001128999999999993999
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATR 1106 (1288)
Q Consensus 1027 ~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~~d~i~~~~Stf~~em~e~~~il~~a~~ 1106 (1288)
.+-++|.||-|+|||++++.++.. .|..+-. +.. ..+.... ..... ..+..+ .-......
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~~-----~~~~~~~----i~~-~~l~~~~-~g~~~--------~~l~~~-f~~A~~~~ 97 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVANE-----TGAFFFL----ING-PEIMSKL-AGESE--------SNLRKA-FEEAEKNA 97 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH-----TTCEEEE----ECH-HHHTTSC-TTHHH--------HHHHHH-HHHHHHTC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHH-----HCCEEEE----EEC-HHHCCCC-CCCHH--------HHHHHH-HHHHHHCC
T ss_conf 864687669988830899999987-----4883799----973-0430254-56178--------888999-99998649
Q ss_pred CCEEEEECCCCCCCHHH------HHHHHHHHHHHHH---HCCCCEEEEECCCCHHHHHHCCCC
Q ss_conf 94999948999999588------9999999999997---426948999918901366302898
Q 000778 1107 NSLVVLDELGRGTSTSD------GQAIAESVLEHFV---HKVQCRGLFSTHYHRLAVDYKKDP 1160 (1288)
Q Consensus 1107 ~sLvLlDE~grGTs~~D------g~aia~aile~L~---~~~~~~~l~~TH~~~l~~~~~~~~ 1160 (1288)
|++|++||.-.=....+ ...+...++..+. ...+..++++|++.+.......++
T Consensus 98 p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~al~r~ 160 (258)
T d1e32a2 98 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 160 (258)
T ss_dssp SEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCGGGTST
T ss_pred CEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHC
T ss_conf 949985211132257887777068999877500110123468811797579931025245424
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.026 Score=29.18 Aligned_cols=106 Identities=14% Similarity=0.201 Sum_probs=53.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 8279999428997138886223489884408622---4654443318899873080226762001128999999999993
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV---PAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSS 1103 (1288)
Q Consensus 1027 ~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~V---Pa~~~~~~~~d~i~~rig~~d~i~~~~Stf~~em~e~~~il~~ 1103 (1288)
.+.+++.||-|+|||++.|.+|.. .|..+ .+.. + .+ .-+|... ..+.++- -...
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~-----~~~~~~~i~~~~--l--~~---~~~g~~~----------~~l~~~f-~~A~ 101 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGE-----AKVPFFTISGSD--F--VE---MFVGVGA----------SRVRDMF-EQAK 101 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH-----HTCCEEEECSCS--S--TT---SCCCCCH----------HHHHHHH-HHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHH-----CCCCEEEEEHHH--H--HH---CCHHHHH----------HHHHHHH-HHHH
T ss_conf 886786689988822899999998-----299879988699--4--26---0010789----------9999999-9999
Q ss_pred CCCCCEEEEECCC-----CCCC---HHH-HHHHHHHHHHHHH---HCCCCEEEEECCCCHHHHH
Q ss_conf 9999499994899-----9999---588-9999999999997---4269489999189013663
Q 000778 1104 ATRNSLVVLDELG-----RGTS---TSD-GQAIAESVLEHFV---HKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1104 a~~~sLvLlDE~g-----rGTs---~~D-g~aia~aile~L~---~~~~~~~l~~TH~~~l~~~ 1155 (1288)
...|++|++||.- |+.. ..+ ...+...++..+- ...+..+|.+|++++....
T Consensus 102 ~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld~ 165 (256)
T d1lv7a_ 102 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 165 (256)
T ss_dssp TTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCG
T ss_pred HCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCH
T ss_conf 7599899997756657567898888748999999999999538777799899980799310798
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.22 E-value=0.011 Score=31.77 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=51.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHH--HC
Q ss_conf 8279999428997138886223489884408622465444331889987308022676200112899999999999--39
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLS--SA 1104 (1288)
Q Consensus 1027 ~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~~d~i~~~~Stf~~em~e~~~il~--~a 1104 (1288)
..-++|.||-|+|||++.+.+|.. .|..+- . +...+.+ .+.+ ...+...+..+.. ..
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~~-----~~~~~~----~----------i~~~~~~-~g~~-~~~~~~~i~~if~~A~~ 98 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAEE-----SNFPFI----K----------ICSPDKM-IGFS-ETAKCQAMKKIFDDAYK 98 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----HTCSEE----E----------EECGGGC-TTCC-HHHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC-----CCCCCC----C----------CCCCCCC-CCCC-CCCHHHHHHHHHHHHHH
T ss_conf 807998896999889999998620-----100233----3----------4565223-5654-21122444445655553
Q ss_pred CCCCEEEEECCC-----CCCCHHHHHHHHHHHHHHHHHCC---C--CEEEEECCCCHHHHH
Q ss_conf 999499994899-----99995889999999999997426---9--489999189013663
Q 000778 1105 TRNSLVVLDELG-----RGTSTSDGQAIAESVLEHFVHKV---Q--CRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1105 ~~~sLvLlDE~g-----rGTs~~Dg~aia~aile~L~~~~---~--~~~l~~TH~~~l~~~ 1155 (1288)
..|++|++||.- +...+.....+..+++..+ ... + ..+|.+|.+.+....
T Consensus 99 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l-~~~~~~~~~v~vi~tTn~~~~ld~ 158 (246)
T d1d2na_ 99 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLL-KKAPPQGRKLLIIGTTSRKDVLQE 158 (246)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHT-TCCCSTTCEEEEEEEESCHHHHHH
T ss_pred CCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-CCCCCCCCCEEEEECCCCHHHCCC
T ss_conf 242223310256676513454412478999999986-077765450145532488322561
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=96.16 E-value=0.028 Score=28.94 Aligned_cols=121 Identities=21% Similarity=0.314 Sum_probs=62.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCC---CCHHHHHHHHHHHHHHC
Q ss_conf 279999428997138886223489884408622465444331889987308022676200---11289999999999939
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQ---STFLTELSETALMLSSA 1104 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~~d~i~~~~---Stf~~em~e~~~il~~a 1104 (1288)
.-.+|+||-|.|||+++.-++.-+.-. -||..-....++. +.. ..+..|. ..|...+..+..-+...
T Consensus 44 ~n~llvG~~GvGKtaiv~~la~~i~~~----~vp~~l~~~~i~~-----ld~-~~l~ag~~~~g~~e~r~~~i~~~~~~~ 113 (387)
T d1qvra2 44 NNPVLIGEPGVGKTAIVEGLAQRIVKG----DVPEGLKGKRIVS-----LQM-GSLLAGAKYRGEFEERLKAVIQEVVQS 113 (387)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHT----CSCTTSTTCEEEE-----ECC------------CHHHHHHHHHHHHHTT
T ss_pred CCCEEECCCCCCHHHHHHHHHHHHHHC----CCCHHHCCCEEEE-----EEH-HHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 997687999988999999999999808----9997886966899-----557-666526674136899999999985058
Q ss_pred CCCCEEEEECC----CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCC
Q ss_conf 99949999489----9999958899999999999974269489999189013663028986
Q 000778 1105 TRNSLVVLDEL----GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPR 1161 (1288)
Q Consensus 1105 ~~~sLvLlDE~----grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~ 1161 (1288)
..+-++.+||+ |.|.+ .|..-+..+|.-.+.+....+|.+|..-+... +...+.
T Consensus 114 ~~~~ilfide~h~l~~~g~~--~g~~d~a~~Lkp~L~rg~~~~I~~tT~~ey~~-~e~d~a 171 (387)
T d1qvra2 114 QGEVILFIDELHTVVGAGKA--EGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPA 171 (387)
T ss_dssp CSSEEEEECCC---------------------HHHHHTTCCCEEEEECHHHHHH-HTTCTT
T ss_pred CCCEEEEECCHHHHHCCCCC--CCCCCHHHHHHHHHHCCCCCEEEECCHHHHHH-HCCCHH
T ss_conf 99669872408888427778--77413899999997378851666368999987-633679
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.13 E-value=0.029 Score=28.82 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=60.2
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCHHHHHHHHCC--CHHHHHH-------------CC
Q ss_conf 8882799994289971388862234898844--08622465444331889987308--0226762-------------00
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ--VGADVPAEIFEISPVDRIFVRMG--AKDHIMA-------------GQ 1087 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq--~G~~VPa~~~~~~~~d~i~~rig--~~d~i~~-------------~~ 1087 (1288)
..|.+++|.|+.|+|||+|+-+++......+ .+.|+..+...-.+. ..+...+ ....+.. ..
T Consensus 24 ~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (242)
T d1tf7a1 24 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDII-KNARSFGWDLAKLVDEGKLFILDASPDPEGQ 102 (242)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHH-HHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHHHHCCCCHHHHHHHCCHHHHHHCCCHHHH
T ss_conf 698399999479999999999999999985688742012667999999-9999849984898871430244421033544
Q ss_pred CCH----HHHH-HHHHHHHHHCCCCCEEEEECCCCCC---CHHH-HHHHHHHHHHHHHHCCCCEEEEECCCCH
Q ss_conf 112----8999-9999999939999499994899999---9588-9999999999997426948999918901
Q 000778 1088 STF----LTEL-SETALMLSSATRNSLVVLDELGRGT---STSD-GQAIAESVLEHFVHKVQCRGLFSTHYHR 1151 (1288)
Q Consensus 1088 Stf----~~em-~e~~~il~~a~~~sLvLlDE~grGT---s~~D-g~aia~aile~L~~~~~~~~l~~TH~~~ 1151 (1288)
..+ ..++ .++...+.. ..+.++++|-+..=. .... -......++..+ .+.+++++++.|...
T Consensus 103 ~~~~~~~~~~l~~~l~~~i~~-~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 173 (242)
T d1tf7a1 103 EVVGGFDLSALIERINYAIQK-YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARL-KQIGATTVMTTERIE 173 (242)
T ss_dssp SCCSSHHHHHHHHHHHHHHHH-HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHH-HHHTCEEEEEEECSS
T ss_pred HHHCCCCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHCCCCEEEEECCCC
T ss_conf 443024589999999999886-31222002078899876057267899999999999-863971688421025
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.98 E-value=0.0037 Score=34.90 Aligned_cols=103 Identities=15% Similarity=0.078 Sum_probs=49.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHH-HHHHHHHCC
Q ss_conf 27999942899713888622348988440862246-5444331889987308022676200112899999-999999399
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPA-EIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSE-TALMLSSAT 1105 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa-~~~~~~~~d~i~~rig~~d~i~~~~Stf~~em~e-~~~il~~a~ 1105 (1288)
..++|+||-|+||||+|+.+...+ ... .-.+-. +..++.+- ...++......-...+.+ +..++ -.
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~i-~~~-~rivtiEd~~El~l~--------~~~~~~~~~~~~~~~~~~ll~~~l--R~ 234 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEFI-PKE-ERIISIEDTEEIVFK--------HHKNYTQLFFGGNITSADCLKSCL--RM 234 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS-CTT-CCEEEEESSCCCCCS--------SCSSEEEEECBTTBCHHHHHHHHT--TS
T ss_pred CCEEEEEECCCCCHHHHHHHHHHC-CCC-CCEEECCCHHHHHCC--------CCCCCCEECCCCCHHHHHHHHHHH--CC
T ss_conf 888999403566257899986530-145-623311322655111--------124541001465424999999974--34
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC-EEEEECCCCHH
Q ss_conf 994999948999999588999999999999742694-89999189013
Q 000778 1106 RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQC-RGLFSTHYHRL 1152 (1288)
Q Consensus 1106 ~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~-~~l~~TH~~~l 1152 (1288)
+|..|++.|. -+.. ++.+++.+ .. |. -++.+.|-..-
T Consensus 235 ~pd~iivgEi---R~~e-----a~~~l~a~-~t-Gh~g~~tT~Ha~s~ 272 (323)
T d1g6oa_ 235 RPDRIILGEL---RSSE-----AYDFYNVL-CS-GHKGTLTTLHAGSS 272 (323)
T ss_dssp CCSEEEESCC---CSTH-----HHHHHHHH-HT-TCSCEEEEECCSSH
T ss_pred CCCCCCCCCC---CCHH-----HHHHHHHH-HH-CCCCEEEEECCCCH
T ss_conf 9985457866---7465-----99999999-81-69857998787999
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.94 E-value=0.035 Score=28.26 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=52.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHH-HHHHHHHH--H
Q ss_conf 82799994289971388862234898844086224654443318899873080226762001128999-99999999--3
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTEL-SETALMLS--S 1103 (1288)
Q Consensus 1027 ~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~~d~i~~~~Stf~~em-~e~~~il~--~ 1103 (1288)
..-+++.||-|+|||++.|.++. ..|+.+- .+..- .+.. .+.++. ..+..+.. .
T Consensus 42 ~~giLl~GppGtGKT~la~aia~-----~~~~~~~----~i~~~-~l~~-------------~~~g~~~~~l~~~f~~a~ 98 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAG-----EARVPFI----TASGS-DFVE-------------MFVGVGAARVRDLFETAK 98 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH-----HTTCCEE----EEEHH-HHHH-------------SCTTHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHH-----HCCCCEE----EEEHH-HHHH-------------CCCCHHHHHHHHHHHHHH
T ss_conf 86488766898883599999998-----7399779----97869-9646-------------245389999999999999
Q ss_pred CCCCCEEEEECCC-----CCC-----CHHHHHHHHHHHHHHH---HHCCCCEEEEECCCCHHHHH
Q ss_conf 9999499994899-----999-----9588999999999999---74269489999189013663
Q 000778 1104 ATRNSLVVLDELG-----RGT-----STSDGQAIAESVLEHF---VHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1104 a~~~sLvLlDE~g-----rGT-----s~~Dg~aia~aile~L---~~~~~~~~l~~TH~~~l~~~ 1155 (1288)
...|++|++||.- |+. +.. ...+...++..+ ....+..+|.+|.+.+....
T Consensus 99 ~~~p~Ii~iDeid~l~~~r~~~~~~~~~~-~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~ld~ 162 (247)
T d1ixza_ 99 RHAPCIVFIDEIDAVGRKRGSGVGGGNDE-REQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 162 (247)
T ss_dssp TSSSEEEEEETHHHHHC---------CHH-HHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCG
T ss_pred HCCCEEEEEECHHHHCCCCCCCCCCCCHH-HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCH
T ss_conf 76997999977366474678998887589-99999999999638777899899980799400699
|
| >d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: Lamin-b receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.84 E-value=0.0076 Score=32.78 Aligned_cols=45 Identities=27% Similarity=0.368 Sum_probs=40.2
Q ss_pred CCCCEEEEECCCCCEEEEEEEEEECCCCCEEEECCCCCHHHHCCC
Q ss_conf 266047750699907868877430789808999468960020268
Q 000778 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1288)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (1288)
.|.-|+-+||+-.-||+-.|.+||..+..++|.|.||.+..|..+
T Consensus 8 ~Ge~vm~RwPgSsLyyev~vls~d~~~~~YtV~ykDGTelelke~ 52 (55)
T d2diga1 8 DGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTELELKEN 52 (55)
T ss_dssp SSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEEEEETT
T ss_pred CCCEEEEECCCCCEEEEEEEEEECCCCEEEEEEECCCCEEECCCC
T ss_conf 784877306998358999998515864179999647861103323
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.78 E-value=0.023 Score=29.48 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 27999942899713888622348
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i 1050 (1288)
..++|+||.|+||||+.+.++--
T Consensus 34 ~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 34 PHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 85998899999889999999976
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.72 E-value=0.0033 Score=35.23 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=37.3
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHC
Q ss_conf 993999949999489999995889999999999997426948999918901366302
Q 000778 1101 LSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYK 1157 (1288)
Q Consensus 1101 l~~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~ 1157 (1288)
+....+..+++||||..++|+.-...++ .++..+. ..++-+|++||.+.++..+.
T Consensus 349 l~~~~~~pililDE~d~~Ld~~~~~~~~-~~l~~~~-~~~~Q~I~iTH~~~~~~~ad 403 (427)
T d1w1wa_ 349 INSYQPSPFFVLDEVDAALDITNVQRIA-AYIRRHR-NPDLQFIVISLKNTMFEKSD 403 (427)
T ss_dssp HHTSSCCSEEEESSTTTTCCHHHHHHHH-HHHHHHC-BTTBEEEEECSCHHHHTTCS
T ss_pred HHCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHH-CCCCEEEEEECCHHHHHHCC
T ss_conf 9547999779996887778999999999-9999972-89988999958789997366
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.71 E-value=0.013 Score=31.09 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 279999428997138886223489
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i~ 1051 (1288)
..++|+||.|+||||+++.++-..
T Consensus 46 ~~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 769997899974879999999998
|
| >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: Survival motor neuron protein 1, smn species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.0075 Score=32.79 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=41.9
Q ss_pred CCCCCCCEEEEECCCCCEEEEEEEEEECCCCCEEEEC-CCCCHHHHCCC
Q ss_conf 3112660477506999078688774307898089994-68960020268
Q 000778 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (1288)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~ 150 (1288)
..-||..|.+.|..|+.||.|.|...+..++.-.|.| |=|..|.+.++
T Consensus 3 ~wkvG~~C~A~~s~Dg~wYRA~I~~v~~~~~~~~V~fvDYGn~e~V~~~ 51 (59)
T d1mhna_ 3 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLS 51 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEECCCEEEEEHH
T ss_conf 6886999999988789898999999748899999999808998998899
|
| >d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: Tudor domain-containing protein 3, TDRD3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.59 E-value=0.0082 Score=32.54 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=40.2
Q ss_pred CCCCEEEEECCCCCEEEEEEEEEECCCCCEEEECCC-CCHHHHCCC
Q ss_conf 266047750699907868877430789808999468-960020268
Q 000778 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDLG 150 (1288)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~l~l~ 150 (1288)
||..|.+.|+.|+.||.|.|.+.++..+...|.|.| |..|.+.++
T Consensus 5 vG~~c~A~~~~D~~wYRA~I~~i~~~~~~~~V~fvDYGn~e~v~~~ 50 (60)
T d2d9ta1 5 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLS 50 (60)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGG
T ss_pred CCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCEEEECHH
T ss_conf 6999999998789799999999827899999999879998998389
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.0035 Score=35.05 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=20.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 279999428997138886223489
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i~ 1051 (1288)
+.++||||+|+||||+++.++...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998899971999999999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.15 E-value=0.0056 Score=33.67 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=20.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHH
Q ss_conf 8279999428997138886223
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1288)
Q Consensus 1027 ~~~~~ItGpNgsGKSTlLk~i~ 1048 (1288)
|.+++|+||+|+||||+++.+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~ 23 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLR 23 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 7499998999999999999998
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.13 E-value=0.067 Score=26.36 Aligned_cols=105 Identities=18% Similarity=0.167 Sum_probs=58.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 27999942899713888622348988440862246544433188998730802267620011289999999999939999
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN 1107 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~~d~i~~~~Stf~~em~e~~~il~~a~~~ 1107 (1288)
..+.|.||.|+|||-|+..+|--. . ..+..+.. +... .....+ ...+..+ .+.++...+ ...
T Consensus 37 n~l~l~G~~G~GKTHLl~A~~~~~-~-~~~~~~~~----~~~~-~~~~~~--~~~~~~~------~~~~~~~~~---~~~ 98 (213)
T d1l8qa2 37 NPIFIYGSVGTGKTHLLQAAGNEA-K-KRGYRVIY----SSAD-DFAQAM--VEHLKKG------TINEFRNMY---KSV 98 (213)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH-H-HTTCCEEE----EEHH-HHHHHH--HHHHHHT------CHHHHHHHH---HTC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH-C-CCCCCEEE----ECHH-HHHHHH--HHHHHCC------CHHHHHHHH---HHC
T ss_conf 857998889983999999999874-4-67650488----4437-879999--9998716------626678987---621
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCH
Q ss_conf 49999489999995889999999999997426948999918901
Q 000778 1108 SLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHR 1151 (1288)
Q Consensus 1108 sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~ 1151 (1288)
.++++|++..=....+.......++.++... ++.+|+++..+-
T Consensus 99 dll~iDDi~~i~~~~~~~~~lf~lin~~~~~-~~~iiits~~~p 141 (213)
T d1l8qa2 99 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLL-EKQIILASDRHP 141 (213)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHHT-TCEEEEEESSCG
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCCC
T ss_conf 3010112655058657788999999987631-663899548751
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.10 E-value=0.027 Score=29.03 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 279999428997138886223489
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i~ 1051 (1288)
..++|+||.|+||||+++.++--.
T Consensus 34 ~~lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 859998999998499999999997
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.08 E-value=0.02 Score=29.97 Aligned_cols=105 Identities=20% Similarity=0.217 Sum_probs=56.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC----CCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 88279999428997138886223489884408622----46544433188998730802267620011289999999999
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV----PAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALML 1101 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~V----Pa~~~~~~~~d~i~~rig~~d~i~~~~Stf~~em~e~~~il 1101 (1288)
..-+++|+||.||||||+|..+..- +..+....+ |-+.. +.-..+ ..+.. ....+|..-+. .++
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~-~~~~~~~i~tiEdPiE~~-~~~~~q--~~v~~-----~~~~~~~~~l~---~~l 224 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQE-LNSSERNILTVEDPIEFD-IDGIGQ--TQVNP-----RVDMTFARGLR---AIL 224 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH-HCCTTSCEEEEESSCCSC-CSSSEE--EECBG-----GGTBCHHHHHH---HHG
T ss_pred HHCEEEEECCCCCCCCHHHHHHHHH-HCCCCCEEEEECCCCCCC-CCCCCE--EEECC-----CCCCCHHHHHH---HHH
T ss_conf 1054898767877744779998666-257874699962674345-678870--26558-----76779999999---998
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf 9399994999948999999588999999999999742694899991890136
Q 000778 1102 SSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1102 ~~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~ 1153 (1288)
-..|.+|++.|+ .|..... +.++ .+. .|..++.+-|-.+-.
T Consensus 225 --R~dPDvi~igEi---Rd~~ta~----~a~~-aa~-tGhlV~tTlHa~~a~ 265 (401)
T d1p9ra_ 225 --RQDPDVVMVGEI---RDLETAQ----IAVQ-ASL-TGHLVMSTLHTNTAV 265 (401)
T ss_dssp --GGCCSEEEESCC---CSHHHHH----HHHH-HHH-TTCEEEEEECCSSSH
T ss_pred --HHCCCEEEECCC---CCHHHHH----HHHH-HHH-CCCEEEEEECCCCHH
T ss_conf --413888984576---8759999----9999-972-498589983367667
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.00 E-value=0.006 Score=33.46 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=24.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 279999428997138886223489884408622
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~V 1060 (1288)
.+++|||++|||||||++.++. .+...|.-|
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~--~l~~~g~~v 33 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIP--ALCARGIRP 33 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH--HHHHTTCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCEE
T ss_conf 8899991899989999999999--999779768
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.90 E-value=0.025 Score=29.25 Aligned_cols=117 Identities=11% Similarity=0.062 Sum_probs=56.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHH---HHCCCCHHH-HHHHHHHHHH
Q ss_conf 827999942899713888622348988440862246544433188998730802267---620011289-9999999999
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHI---MAGQSTFLT-ELSETALMLS 1102 (1288)
Q Consensus 1027 ~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~~d~i---~~~~Stf~~-em~e~~~il~ 1102 (1288)
...+++.||.|.||||+.+.++-.+.-.+....-++.. ..-+..+.......-.. ....+.... +..++..-+.
T Consensus 24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~ir~l~~~~~ 101 (207)
T d1a5ta2 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGH--CRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLN 101 (207)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSC--SHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC--CCHHHHHHHCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 73798889998759999999998210101232122334--2015565430343110123431345333211467765321
Q ss_pred ---HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC--CCEEEEECCCCH
Q ss_conf ---3999949999489999995889999999999997426--948999918901
Q 000778 1103 ---SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKV--QCRGLFSTHYHR 1151 (1288)
Q Consensus 1103 ---~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~--~~~~l~~TH~~~ 1151 (1288)
.-....++|+||.-+-+... +-+++..+ ++. ++.++++|++..
T Consensus 102 ~~~~~~~~kviIide~d~l~~~a-----~n~Llk~l-Eep~~~~~fIl~t~~~~ 149 (207)
T d1a5ta2 102 EHARLGGAKVVWVTDAALLTDAA-----ANALLKTL-EEPPAETWFFLATREPE 149 (207)
T ss_dssp SCCTTSSCEEEEESCGGGBCHHH-----HHHHHHHH-TSCCTTEEEEEEESCGG
T ss_pred HCCCCCCCCEEEECHHHHHHHHH-----HHHHHHHH-HHHCCCCEEEEEECCHH
T ss_conf 10035764047731344200001-----49999999-85011110455306865
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.89 E-value=0.078 Score=25.94 Aligned_cols=126 Identities=13% Similarity=-0.035 Sum_probs=59.1
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHCCCHHHH--HHCCCCHHHHHHHHHHHHH
Q ss_conf 882799994289971388862234898844086-2246544433188998730802267--6200112899999999999
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGA-DVPAEIFEISPVDRIFVRMGAKDHI--MAGQSTFLTELSETALMLS 1102 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~-~VPa~~~~~~~~d~i~~rig~~d~i--~~~~Stf~~em~e~~~il~ 1102 (1288)
....++|+||-|.|||+++|.++-.. -...+. ++.............+..+...... ..........+.+....+.
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELY-KDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLR 120 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH-TTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH-HCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 88816888989998999999999997-54468857873230011246665456776433455532543578999999875
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--HHCCCCEEEEECCCCHHHH
Q ss_conf 399994999948999999588999999999999--7426948999918901366
Q 000778 1103 SATRNSLVVLDELGRGTSTSDGQAIAESVLEHF--VHKVQCRGLFSTHYHRLAV 1154 (1288)
Q Consensus 1103 ~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L--~~~~~~~~l~~TH~~~l~~ 1154 (1288)
......++++|+.-.-........ ..++..+ .......+++++.......
T Consensus 121 ~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 172 (276)
T d1fnna2 121 ERDLYMFLVLDDAFNLAPDILSTF--IRLGQEADKLGAFRIALVIVGHNDAVLN 172 (276)
T ss_dssp HTTCCEEEEEETGGGSCHHHHHHH--HHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHH--HHHHHCCCCCCCCCEEEEECCCCHHHHH
T ss_conf 206543320368887535431068--8887404433565248862587645443
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.82 E-value=0.081 Score=25.81 Aligned_cols=12 Identities=8% Similarity=0.121 Sum_probs=6.2
Q ss_pred CCHHHHHHHHCC
Q ss_conf 331889987308
Q 000778 1067 ISPVDRIFVRMG 1078 (1288)
Q Consensus 1067 ~~~~d~i~~rig 1078 (1288)
+-++|.+.+.+.
T Consensus 357 ililDE~d~~Ld 368 (427)
T d1w1wa_ 357 FFVLDEVDAALD 368 (427)
T ss_dssp EEEESSTTTTCC
T ss_pred EEEEECCCCCCC
T ss_conf 799968877789
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.01 Score=31.88 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 8882799994289971388862234
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
..+.+++|+||.|+||||+.|.++-
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9871899989999898999999999
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.56 E-value=0.017 Score=30.44 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHH
Q ss_conf 7999942899713888622348
Q 000778 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~i 1050 (1288)
.++|+||.|+||||+++.++--
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 5999889987755899999998
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.41 E-value=0.013 Score=31.27 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 882799994289971388862234
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.|++++|+||.|+||||+.+.++-
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~ 26 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALAN 26 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 985999988999988999999999
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=94.37 E-value=0.1 Score=25.12 Aligned_cols=104 Identities=16% Similarity=0.260 Sum_probs=51.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 82799994289971388862234898844086224654443318899873080226762001128999999999993999
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATR 1106 (1288)
Q Consensus 1027 ~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~~d~i~~~~Stf~~em~e~~~il~~a~~ 1106 (1288)
..+++++||-|+|||.+.|.+|.-+ |.-+|-.. +...+-+......|...+.+ +...+..
T Consensus 123 ~g~~l~~G~pG~GKT~la~ala~~~-----~~~~~~~~------------~~~~~~~~~~~G~~e~~~~~---~f~~a~~ 182 (321)
T d1w44a_ 123 SGMVIVTGKGNSGKTPLVHALGEAL-----GGKDKYAT------------VRFGEPLSGYNTDFNVFVDD---IARAMLQ 182 (321)
T ss_dssp SEEEEEECSSSSCHHHHHHHHHHHH-----HTTSCCEE------------EEBSCSSTTCBCCHHHHHHH---HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH-----CCCCCEEE------------EEHHHHHHCCCCHHHHHHHH---HHHHHHH
T ss_conf 8638887799850889999999986-----37998089------------78268544244457899999---9999862
Q ss_pred CCEEEEECCCC-----CCCHHHHH--HHHHHH---HHHHHHCCCCEEEEECCCC
Q ss_conf 94999948999-----99958899--999999---9999742694899991890
Q 000778 1107 NSLVVLDELGR-----GTSTSDGQ--AIAESV---LEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1107 ~sLvLlDE~gr-----GTs~~Dg~--aia~ai---le~L~~~~~~~~l~~TH~~ 1150 (1288)
+++|++||+-+ |.+...+. ...-.+ ++-+....++.+|.+|...
T Consensus 183 ~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~~ 236 (321)
T d1w44a_ 183 HRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPT 236 (321)
T ss_dssp CSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCC
T ss_pred CCEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf 658974101222123456789874133451566520355667884999837976
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.29 E-value=0.058 Score=26.81 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=26.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 88279999428997138886223489884408622
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~V 1060 (1288)
+|.+++|.|+-|+||||+++.++- .+...|..|
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~--~L~~~g~~v 34 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVE--ALCAAGHRA 34 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH--HHHHTTCCE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH--HHHHCCCCE
T ss_conf 805999989988899999999999--998779968
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.15 E-value=0.022 Score=29.70 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 1334422788888279999428997138886223
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1288)
Q Consensus 1015 v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~ 1048 (1288)
.|-+..+.. ....+++++|+.||||||+.+.++
T Consensus 3 ~p~~~~~~~-~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 3 LPESSSLLS-PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp BSTTSCSSC-SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCCCCCCC-CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 898665579-999899998999998999999999
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.11 E-value=0.051 Score=27.19 Aligned_cols=125 Identities=20% Similarity=0.349 Sum_probs=65.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHC---CCCHHHHHHHHHHHHH
Q ss_conf 8827999942899713888622348988440862246544433188998730802267620---0112899999999999
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAG---QSTFLTELSETALMLS 1102 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~~d~i~~~---~Stf~~em~e~~~il~ 1102 (1288)
..+-.+|+||-|.|||+++.-++.-+.-. -||..-....++. +.. ..+..| ...|...+..+..-+.
T Consensus 38 ~k~n~lLVG~~GvGKTalv~~la~ri~~~----~vp~~l~~~~i~~-----l~~-~~liag~~~~g~~e~r~~~i~~~~~ 107 (268)
T d1r6bx2 38 RKNNPLLVGESGVGKTAIAEGLAWRIVQG----DVPEVMADCTIYS-----LDI-GSLLAGTKYRGDFEKRFKALLKQLE 107 (268)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHT----CSCGGGTTCEEEE-----CCC-C---CCCCCSSCHHHHHHHHHHHHS
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHHC----CCCCCCCCCEEEE-----EEE-CHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 66896798889886779999999999817----8450003541278-----640-5675067630058999999999861
Q ss_pred HCCCCCEEEEECC----CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCE
Q ss_conf 3999949999489----99999588999999999999742694899991890136630289862
Q 000778 1103 SATRNSLVVLDEL----GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRV 1162 (1288)
Q Consensus 1103 ~a~~~sLvLlDE~----grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v 1162 (1288)
...+.++.+||+ |.|.+...+..++ .+|.-.+.+....+|.+|..-+.......++.+
T Consensus 108 -~~~~iIlfiDeih~l~~~g~~~g~~~d~a-~~Lkp~L~rg~i~vIgatT~eey~~~~e~d~al 169 (268)
T d1r6bx2 108 -QDTNSILFIDEIHTIIGAGAASGGQVDAA-NLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRAL 169 (268)
T ss_dssp -SSSCEEEEETTTTTTTTSCCSSSCHHHHH-HHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSS
T ss_pred -CCCCCEEEECCHHHHHCCCCCCCCCCCHH-HHHHHHHHCCCCEEEEECCHHHHHHHHHHCHHH
T ss_conf -26784688433698862777788641179-876488747987599957999999998616788
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.11 E-value=0.021 Score=29.79 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=22.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 279999428997138886223489884408622
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~V 1060 (1288)
+++.|+|++|||||||+..+.. .+...|.-|
T Consensus 2 kii~I~G~~gSGKTTli~~l~~--~L~~~g~~v 32 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVA--AAVREGWRV 32 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH--HHHHTTCCE
T ss_pred CEEEEEECCCCCHHHHHHHHHH--HHHHCCCEE
T ss_conf 0999980999989999999999--998679837
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.85 E-value=0.13 Score=24.44 Aligned_cols=124 Identities=18% Similarity=0.242 Sum_probs=64.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCC---CHHHHHHHHHHHHH
Q ss_conf 882799994289971388862234898844086224654443318899873080226762001---12899999999999
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQS---TFLTELSETALMLS 1102 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~~d~i~~~~S---tf~~em~e~~~il~ 1102 (1288)
...-.+|+||-|.|||+++..++.-+.-. -||..-....++ .+. -..+..|.+ .|...+..+..-+.
T Consensus 42 ~k~n~lLvG~pGVGKTalv~~LA~ri~~~----~vp~~L~~~~i~-----~ld-~~~LiAg~~~rG~~E~rl~~il~e~~ 111 (195)
T d1jbka_ 42 TKNNPVLIGEPGVGKTAIVEGLAQRIING----EVPEGLKGRRVL-----ALD-MGALVAGAKYRGEFEERLKGVLNDLA 111 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHT----CSCGGGTTCEEE-----EEC-HHHHHTTTCSHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHC----CCCHHHCCCEEE-----EEE-HHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 88873998358754479999999999808----999788185699-----966-99986458740779999999999873
Q ss_pred HCCCCCEEEEECC----CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCC
Q ss_conf 3999949999489----9999958899999999999974269489999189013663028986
Q 000778 1103 SATRNSLVVLDEL----GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPR 1161 (1288)
Q Consensus 1103 ~a~~~sLvLlDE~----grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~ 1161 (1288)
....+-++.+||+ |.|.+.. +..++ .++.-.+.+....+|.+|..-+....+..++.
T Consensus 112 ~~~~~iILfIDeih~l~~~g~~~g-~~d~~-~~Lkp~L~rg~l~~IgatT~eey~~~~e~d~a 172 (195)
T d1jbka_ 112 KQEGNVILFIDELHTMVGAGKADG-AMDAG-NMLKPALARGELHCVGATTLDEYRQYIEKDAA 172 (195)
T ss_dssp HSTTTEEEEEETGGGGTT-------CCCCH-HHHHHHHHTTSCCEEEEECHHHHHHHTTTCHH
T ss_pred CCCCCEEEECCHHHHHHCCCCCCC-CCCHH-HHHHHHHHCCCCEEEECCCHHHHHHHHHCCHH
T ss_conf 179808997260899843787777-52389-99999985799549851899999999873889
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.84 E-value=0.018 Score=30.23 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 82799994289971388862234
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1027 ~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.++++|+||.|+||||+.+.++-
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~ 25 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 85999989999998999999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.83 E-value=0.018 Score=30.22 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=20.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 882799994289971388862234
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.|.+++|+||.|+||+|+++.+.-
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~ 24 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLK 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 980999999999999999999986
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.55 E-value=0.019 Score=30.06 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHH
Q ss_conf 2799994289971388862234
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.+++|+||.|+||||+.+.++-
T Consensus 3 klI~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 0899989999998999999999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=93.53 E-value=0.02 Score=29.86 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=18.5
Q ss_pred CEEEEEECCCCCHHHHHHHHH
Q ss_conf 279999428997138886223
Q 000778 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~ 1048 (1288)
.+++|+||.||||||+.+.+.
T Consensus 3 klIii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799998999999999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.49 E-value=0.021 Score=29.74 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=23.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 279999428997138886223489884408622
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~V 1060 (1288)
++++|+||.|+||||+++.++- .+...|..+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~--~l~~~~~~~ 32 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMD--NLRKEGVNY 32 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH--HHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCCE
T ss_conf 8899989999898999999999--998769986
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=93.43 E-value=0.0031 Score=35.44 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 279999428997138886223489
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i~ 1051 (1288)
.+.+|+||||+||||+|..|..+.
T Consensus 25 ~~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 25 LVTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 808998899998799999999996
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.23 E-value=0.028 Score=28.90 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.1
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 8882799994289971388862234
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.++-.++|+||.|+||||+.+.++-
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9988899982899988999999999
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.18 E-value=0.17 Score=23.71 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=52.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHCCCHHHHHHCCCC-HHHHHHHHHHHHHHC
Q ss_conf 827999942899713888622348988440862246544433-188998730802267620011-289999999999939
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEIS-PVDRIFVRMGAKDHIMAGQST-FLTELSETALMLSSA 1104 (1288)
Q Consensus 1027 ~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~-~~d~i~~rig~~d~i~~~~St-f~~em~e~~~il~~a 1104 (1288)
...++|.||.|.||||+.+.++-... ...+ ......... .+..+... ...+-+..+.+. -..+ .+..++..+
T Consensus 34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~-~~~~--~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~i~--~ir~~~~~~ 107 (239)
T d1njfa_ 34 HHAYLFSGTRGVGKTSIARLLAKGLN-CETG--ITATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--DTRDLLDNV 107 (239)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH-CTTC--SCSSCCSCSHHHHHHHHT-CCTTEEEEETTCSSSHH--HHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC-CCCC--CCCCCCCCCHHHHHHHCC-CCCEEEEECCHHCCCHH--HHHHHHHHH
T ss_conf 70598888998758999999999846-8556--666755542479999747-98707996112007899--999999999
Q ss_pred ------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHC--CCCEEEEECCCCHH
Q ss_conf ------9994999948999999588999999999999742--69489999189013
Q 000778 1105 ------TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHK--VQCRGLFSTHYHRL 1152 (1288)
Q Consensus 1105 ------~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~--~~~~~l~~TH~~~l 1152 (1288)
.+..++|+||.-.- +.. + ..+++..+ +. .++.++++|++..-
T Consensus 108 ~~~~~~~~~kviiIde~d~l-~~~-~---q~~Llk~l-E~~~~~~~~il~tn~~~~ 157 (239)
T d1njfa_ 108 QYAPARGRFKVYLIDEVHML-SRH-S---FNALLKTL-EEPPEHVKFLLATTDPQK 157 (239)
T ss_dssp CCSCSSSSSEEEEEETGGGS-CHH-H---HHHHHHHH-HSCCTTEEEEEEESCGGG
T ss_pred HHCCCCCCCEEEEEECCCCC-CHH-H---HHHHHHHH-HCCCCCEEEEEECCCCCC
T ss_conf 74652599879999781108-999-9---99999998-568988699997388563
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.17 E-value=0.019 Score=30.04 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 82799994289971388862234
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1027 ~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.+.++|+||.|+||||+.+.++-
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 32899989999989999999999
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.11 E-value=0.024 Score=29.41 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=19.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHH
Q ss_conf 2799994289971388862234
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
+.++|+||.|+||||+.|.++-
T Consensus 3 k~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 7499989999999999999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.03 E-value=0.032 Score=28.54 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 8882799994289971388862234
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.+|.++.|||+-|+||||+.|.++-
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9976999889999999999999999
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.95 E-value=0.027 Score=29.06 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=18.9
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799994289971388862234
Q 000778 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
+++|+||-|+|||||++.+..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.84 E-value=0.015 Score=30.80 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=19.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 27999942899713888622348
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i 1050 (1288)
..+++.||-|+|||.+.|++|..
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 66999899998888999998621
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.72 E-value=0.033 Score=28.43 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=22.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 27999942899713888622348988440862
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~ 1059 (1288)
-+++|+||-||||||+.+.+.- .+.+.|..
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~--~l~~~~~~ 52 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQ--TLREQGIS 52 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHHTTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHCCCCCC
T ss_conf 8999789887899999999999--83634665
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.64 E-value=0.034 Score=28.34 Aligned_cols=33 Identities=33% Similarity=0.308 Sum_probs=24.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 27999942899713888622348988440862246
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPA 1062 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa 1062 (1288)
++++|+|+.|+||||+.+.++- .+...|..++.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~--~L~~~~~~~~~ 34 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKE--ILDNQGINNKI 34 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH--HHHTTTCCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHHCCCCEEE
T ss_conf 1999989899898999999999--99876998899
|
| >d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: Tudor and KH domain-containing protein TDRKH species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.45 E-value=0.054 Score=26.98 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=39.2
Q ss_pred CCCCCCCEEEEECCCCCEEEEEEEEEECCCCCEEEEC-CCCCHHHHCCCC
Q ss_conf 3112660477506999078688774307898089994-689600202686
Q 000778 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLGK 151 (1288)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~~ 151 (1288)
..-+|..|-+.|+.|+.||.|.|..... .+...|.| |-|..+.+.+..
T Consensus 25 ~~~~G~~~~a~~~~d~~wyRa~V~~~~~-~~~~~V~~vDyG~~~~v~~~~ 73 (97)
T d2diqa1 25 TVHVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLKD 73 (97)
T ss_dssp CCCTTCEEEECCTTTCSCEEEEECCCCS-SSCEEEEETTTCCEEEECGGG
T ss_pred CCCCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEEEEECCEEEEEHHH
T ss_conf 8988999999988799499999999889-997999999609989986799
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=92.45 E-value=0.21 Score=23.05 Aligned_cols=115 Identities=17% Similarity=0.038 Sum_probs=48.1
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCC----H--------HHHHHCCCCHHHH
Q ss_conf 882799994289971388862234898844086224654443318899873080----2--------2676200112899
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGA----K--------DHIMAGQSTFLTE 1093 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~----~--------d~i~~~~Stf~~e 1093 (1288)
.....+|.+|-|+|||+.+- .++.+.|..+--..-+..+.++...++.. . .........++.-
T Consensus 7 ~~~~~ll~apTGsGKT~~~~-----~~~~~~~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVP-----AAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTITTGSPITYSTY 81 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHH-----HHHHTTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEECCCCSEEEEEH
T ss_pred CCCEEEEEECCCCCHHHHHH-----HHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 78889999688779999999-----9999869939997676999999999999985202464300122113442278864
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 999999999399994999948999999588999999999999742694899991
Q 000778 1094 LSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFST 1147 (1288)
Q Consensus 1094 m~e~~~il~~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~T 1147 (1288)
............+-++||+||.-.- +.....++ ..+++.+.......++..|
T Consensus 82 ~~~~~~~~~~~~~~~~vIiDE~H~~-~~~~~~~~-~~~l~~~~~~~~~~~l~~T 133 (136)
T d1a1va1 82 GKFLADGGCSGGAYDIIICDECHST-DATSILGI-GTVLDQAETAGARLVVLAT 133 (136)
T ss_dssp HHHHHTTGGGGCCCSEEEEETTTCC-SHHHHHHH-HHHHHHTTTTTCSEEEEEE
T ss_pred EEECCCCCHHHHCCCEEEEECCCCC-CHHHHHHH-HHHHHHHHHCCCCCEEEEE
T ss_conf 1000235302415999998255535-88789999-9999999877997299992
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.38 E-value=0.21 Score=23.00 Aligned_cols=121 Identities=15% Similarity=0.137 Sum_probs=59.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC------CCCCC-CCC-CH---HHHHHHHCCCHHHHH--HCCCCHH
Q ss_conf 88827999942899713888622348988440862------24654-443-31---889987308022676--2001128
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD------VPAEI-FEI-SP---VDRIFVRMGAKDHIM--AGQSTFL 1091 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~------VPa~~-~~~-~~---~d~i~~rig~~d~i~--~~~Stf~ 1091 (1288)
....+++|.|.-|.||||+.+.+.--. -...+.+ |.... ... .+ ...+..+.+..+... .......
T Consensus 42 ~~~~~v~I~GmgGiGKTtLA~~v~~~~-~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (277)
T d2a5yb3 42 LDSFFLFLHGRAGSGKSVIASQALSKS-DQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTS 120 (277)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHC-SSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-HHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHH
T ss_conf 784089997799788899999999855-6554012764899993687777789999999998722022027863212336
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCC
Q ss_conf 9999999999939999499994899999958899999999999974269489999189013663028
Q 000778 1092 TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1092 ~em~e~~~il~~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~ 1158 (1288)
.........-.....+.|+++|.. =+..+ ++.+. ..++.+|++|-+..++.....
T Consensus 121 ~~~~~~~~~~~L~~kr~LlVLDDv---~~~~~--------~~~~~-~~~srilvTTR~~~v~~~~~~ 175 (277)
T d2a5yb3 121 VVLKRMICNALIDRPNTLFVFDDV---VQEET--------IRWAQ-ELRLRCLVTTRDVEISNAASQ 175 (277)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEEE---CCHHH--------HHHHH-HTTCEEEEEESBGGGGGGCCS
T ss_pred HHHHHHHHHHHHCCCCEEEECCHH---HHHHH--------HHHHC-CCCCEEEEEEEHHHHHHHCCC
T ss_conf 999999999984468816752506---67766--------55520-457559999644899986378
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.16 E-value=0.034 Score=28.33 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.6
Q ss_pred CEEEEEECCCCCHHHHHHHHH
Q ss_conf 279999428997138886223
Q 000778 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~ 1048 (1288)
+-++|+||+|+||+|+++.++
T Consensus 2 rpIvl~GpsG~GK~tl~~~L~ 22 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 769998999999899999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.06 E-value=0.036 Score=28.20 Aligned_cols=21 Identities=43% Similarity=0.711 Sum_probs=18.4
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799994289971388862234
Q 000778 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
-++|+||+|+||+|+++.++-
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 199999999999999999997
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.041 Score=27.78 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHH
Q ss_conf 2799994289971388862234
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
=+++|+||-||||||+.+.++-
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999989997879999999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.048 Score=27.36 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=18.7
Q ss_pred CEEEEEECCCCCHHHHHHHHH
Q ss_conf 279999428997138886223
Q 000778 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~ 1048 (1288)
+.++|+||.|+||+|+++.+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~ 24 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLI 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHH
T ss_conf 719999989999999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=91.69 E-value=0.043 Score=27.66 Aligned_cols=21 Identities=43% Similarity=0.452 Sum_probs=18.5
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799994289971388862234
Q 000778 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.++|+||-|+||||+.+.++-
T Consensus 6 ~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 798989999998999999999
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.63 E-value=0.23 Score=22.74 Aligned_cols=102 Identities=13% Similarity=0.126 Sum_probs=53.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHH-HHHHHHHHHHH-
Q ss_conf 8827999942899713888622348988440862246544433188998730802267620011289-99999999993-
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLT-ELSETALMLSS- 1103 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~~d~i~~~~Stf~~-em~e~~~il~~- 1103 (1288)
.+..++++||+|+||+|+.+.++-.+ ..... ....+- .+..+ +. ...+ +++++..-+..
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i-~~~~~-----~h~D~~-------~i~~~-----~~-~I~Id~IR~i~~~~~~~ 74 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYV-EKFPP-----KASDVL-------EIDPE-----GE-NIGIDDIRTIKDFLNYS 74 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHH-HTSCC-----CTTTEE-------EECCS-----SS-CBCHHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HCCCC-----CCCCEE-------EEECC-----CC-CCCHHHHHHHHHHHHHC
T ss_conf 98559988989988899999999998-43456-----799889-------98077-----67-89989999999999617
Q ss_pred --CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC--CCEEEEECCCCHH
Q ss_conf --999949999489999995889999999999997426--9489999189013
Q 000778 1104 --ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKV--QCRGLFSTHYHRL 1152 (1288)
Q Consensus 1104 --a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~--~~~~l~~TH~~~l 1152 (1288)
.....++|+||.-+-|. . -+.|+|..| ++. ++..+++|++.+-
T Consensus 75 ~~~~~~KviIId~ad~l~~----~-aqNaLLK~L-EEPp~~t~fiLit~~~~~ 121 (198)
T d2gnoa2 75 PELYTRKYVIVHDCERMTQ----Q-AANAFLKAL-EEPPEYAVIVLNTRRWHY 121 (198)
T ss_dssp CSSSSSEEEEETTGGGBCH----H-HHHHTHHHH-HSCCTTEEEEEEESCGGG
T ss_pred CCCCCCEEEEEECCCCCCH----H-HHHHHHHHH-HCCCCCCEEEECCCCHHH
T ss_conf 5458987999947310366----6-664788877-378988522220699566
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.60 E-value=0.06 Score=26.69 Aligned_cols=24 Identities=29% Similarity=0.211 Sum_probs=20.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 882799994289971388862234
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
....++|.||.|+||||+++.+|.
T Consensus 51 ~~~~lll~GPpG~GKTt~a~~la~ 74 (253)
T d1sxja2 51 VFRAAMLYGPPGIGKTTAAHLVAQ 74 (253)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 874499987999988899999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.99 E-value=0.077 Score=25.96 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=25.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 882799994289971388862234898844086
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~ 1058 (1288)
+|.+++|-|+-||||||+++.+.- .+...|.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~--~L~~~g~ 31 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVE--TLEQLGI 31 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH--HHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH--HHHHCCC
T ss_conf 987899989988879999999999--9996799
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.93 E-value=0.076 Score=26.00 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=21.8
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 88827999942899713888622348
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLA 1050 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~i 1050 (1288)
.....++|.||.|+||||+.+.++..
T Consensus 30 ~~P~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 30 ESPTAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99979998897998899999999998
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.66 E-value=0.091 Score=25.45 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=24.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 88279999428997138886223489884408622
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~V 1060 (1288)
+|.+++|-|+-|+||||+++.++- .+...|..+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~--~L~~~~~~~ 34 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYK--KLQPNCKLL 34 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH--HTTTSEEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH--HHHHCCEEE
T ss_conf 768999989988869999999999--997197799
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=90.55 E-value=0.092 Score=25.45 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=20.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 799994289971388862234898844086224
Q 000778 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVP 1061 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VP 1061 (1288)
+++|||+-||||||..+.+ ...|.+|-
T Consensus 4 iIgITG~igSGKStv~~~l------~~~G~~vi 30 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLF------TDLGVPLV 30 (205)
T ss_dssp EEEEECSTTSCHHHHHHHH------HTTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHH------HHCCCEEE
T ss_conf 9998888878899999999------98799399
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.48 E-value=0.33 Score=21.71 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 888279999428997138886223489
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~i~ 1051 (1288)
..|++++|.||-|+||||+.-+++-..
T Consensus 34 p~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 34 ETQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 588799998589898899999999986
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=90.45 E-value=0.097 Score=25.28 Aligned_cols=93 Identities=23% Similarity=0.292 Sum_probs=47.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC------CCCCCCCC--HHHHHHHHCC---CHHHHHHC-------C
Q ss_conf 88279999428997138886223489884408622------46544433--1889987308---02267620-------0
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV------PAEIFEIS--PVDRIFVRMG---AKDHIMAG-------Q 1087 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~V------Pa~~~~~~--~~d~i~~rig---~~d~i~~~-------~ 1087 (1288)
+..+++||||-|+|||||+..++.. +...|.-| |.....-+ +-|++ ||. ........ +
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~--~~~~g~~vavlavDpss~~~ggailgdr~--rm~~~~~~~~~~ir~~~~~g~l 128 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGML--LIREGLKVAVIAVDPSSPVTGGSILGDKT--RMNDLARAEAAFIRPVPSSGHL 128 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC-----------------CTTTTCTTEEEEEECC----
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHHCCCCEEEECCCCCEEEECCCCCCCHH--HHHHHCCCCCCCCCCCCCCCCC
T ss_conf 8328974389999899999999999--97569833220377761000651554136--7887405654101565553444
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH
Q ss_conf 112899999999999399994999948999999588
Q 000778 1088 STFLTELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1088 Stf~~em~e~~~il~~a~~~sLvLlDE~grGTs~~D 1123 (1288)
..+.....+...++.. ....++|+.-.|-|.+..+
T Consensus 129 gg~~~~~~~~~~~~~~-~g~d~iliEtvG~gq~e~~ 163 (327)
T d2p67a1 129 GGASQRARELMLLCEA-AGYDVVIVETVGVGQSETE 163 (327)
T ss_dssp -CHHHHHHHHHHHHHH-TTCSEEEEEEECCTTHHHH
T ss_pred CCCHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCHH
T ss_conf 4203320578999886-4998278750321121023
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=90.37 E-value=0.064 Score=26.48 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=18.6
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799994289971388862234
Q 000778 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.++|+|+.|+||||+.|.++-
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 889988999988999999999
|
| >d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: P100 co-activator, SND1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.27 E-value=0.18 Score=23.41 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=35.9
Q ss_pred CCCCCCEEEEECCCCCEEEEEEEEEECCCCCEEEEC-CCCCHHHHCCC
Q ss_conf 112660477506999078688774307898089994-68960020268
Q 000778 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (1288)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~ 150 (1288)
.-+|.-|-+.|. |+.||.|.|...... +...|.| |=|..|.|.++
T Consensus 26 p~~G~~c~a~~~-D~~wyRa~V~~~~~~-~~~~V~~vDyG~~~~v~~~ 71 (90)
T d2hqxa1 26 PRRGEFCIAKFV-DGEWYRARVEKVESP-AKIHVFYIDYGNREVLPST 71 (90)
T ss_dssp CCTTCEEEEECT-TSCEEEEEEEEEEET-TEEEEEETTTCCEEEECGG
T ss_pred CCCCCEEEEEEC-CCCEEEEEEEEECCC-CEEEEEEEECCCCEEEEHH
T ss_conf 877999999973-898989999996799-9599999948987998779
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.26 E-value=0.12 Score=24.77 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=21.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 8882799994289971388862234
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.+..+++|.||-||||||+.+.++-
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8994899989999988999999999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.15 E-value=0.28 Score=22.12 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 7999942899713888622348988
Q 000778 1029 FILLTGPNMGGKSTLLRQVCLAVIL 1053 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~i~il 1053 (1288)
.++++|.-.+||||+|..+.+.-++
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~~l 52 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 6999768989799999999689868
|
| >d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: p53-binding protein 1, 53BP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.06 E-value=0.18 Score=23.47 Aligned_cols=43 Identities=21% Similarity=0.397 Sum_probs=37.6
Q ss_pred CCCCCCEEEEECCCCCEEEEEEEEEECCCCCEEEECCCCCHHHH
Q ss_conf 11266047750699907868877430789808999468960020
Q 000778 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELL 147 (1288)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l 147 (1288)
++||.||-.-|....-||.|.|+. |...++..+.+|||-+-.+
T Consensus 1 sfvglrvvakwssn~yfysg~i~r-d~g~~r~rl~fdd~~ecev 43 (53)
T d2g3ra1 1 SFVGLRVVAKWSSNGYFYSGKITR-DVGAGKYKLLFDDGYECDV 43 (53)
T ss_dssp CCTTCEEEEECTTTCCEEEEEEEE-EEETTEEEEEETTSCEEEE
T ss_pred CCEEEEEEEEEECCCEEEEEEEEH-HCCCCEEEEEECCCCEEEE
T ss_conf 910079999860387788038860-0178659998059957775
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.96 E-value=0.092 Score=25.44 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 82799994289971388862234
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1027 ~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
..+++|-|+-|+||||+++.++-
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 98899987888779999999999
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.96 E-value=0.11 Score=24.92 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 882799994289971388862234
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
++.+++|.||-||||||+.+.++-
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 782899989999987999999999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.59 E-value=0.13 Score=24.46 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 882799994289971388862234
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
+..+++|+||-||||||+.+.++-
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 972899989999998999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.49 E-value=0.046 Score=27.50 Aligned_cols=26 Identities=23% Similarity=0.130 Sum_probs=21.9
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 88827999942899713888622348
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLA 1050 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~i 1050 (1288)
.+|.++.|||+-||||||+.|.++-.
T Consensus 17 ~~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 17 FRGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99969998899999999999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.45 E-value=0.13 Score=24.51 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.5
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 8882799994289971388862234
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.++-+++|.|+-|+||||+++.++-
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9861999889999888999999998
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=89.16 E-value=0.41 Score=21.04 Aligned_cols=119 Identities=10% Similarity=-0.042 Sum_probs=51.1
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCC---H--------HHHHHC--CCCHH
Q ss_conf 8882799994289971388862234898844086224654443318899873080---2--------267620--01128
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGA---K--------DHIMAG--QSTFL 1091 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~---~--------d~i~~~--~Stf~ 1091 (1288)
.+|...+|.+|-|+|||+.+-... +......+.-+..-.......++.+..+.. . ...... .....
T Consensus 5 ~~~~~~il~~~tGsGKT~~~~~~~-~~~~~~~~~~vli~~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTRRFLPQI-LAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAFSAHGSGREVIDAMCH 83 (140)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHH-HHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEEEESSCCCCCCCSSCCEEEEEH
T ss_pred HCCCCEEEECCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 759967998179988559999999-9975313851565312106889999875324322011200012233330024269
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 99999999999399994999948999999588999999999999742694899991
Q 000778 1092 TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFST 1147 (1288)
Q Consensus 1092 ~em~e~~~il~~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~T 1147 (1288)
..+.....--....+-+|||+||.=.. ++.... +...++.+....++.+|+-|
T Consensus 84 ~~l~~~~~~~~~~~~~~lvIiDEaH~~-~~~~~~--~~~~~~~~~~~~~~~~l~lT 136 (140)
T d1yksa1 84 ATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIA--ARGWAAHRARANESATILMT 136 (140)
T ss_dssp HHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHH--HHHHHHHHHHTTSCEEEEEC
T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCCC-CHHHHH--HHHHHHHHHHCCCCCEEEEE
T ss_conf 999999841665464208997543346-754399--99999998257999989998
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=88.99 E-value=0.1 Score=25.15 Aligned_cols=20 Identities=40% Similarity=0.446 Sum_probs=18.2
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99994289971388862234
Q 000778 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1030 ~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
++|+|+.|+||||+.|.++-
T Consensus 3 I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989999988999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=88.85 E-value=0.12 Score=24.57 Aligned_cols=27 Identities=33% Similarity=0.282 Sum_probs=20.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 279999428997138886223489884408622
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~V 1060 (1288)
-+++|||+-||||||+.+.+ .+.|..+
T Consensus 4 ~IIgitG~~gSGKstva~~l------~~~g~~~ 30 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALL------RSWGYPV 30 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHH------HHTTCCE
T ss_pred EEEEEECCCCCCHHHHHHHH------HHCCCEE
T ss_conf 89999898877899999999------9879909
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.75 E-value=0.12 Score=24.69 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=24.7
Q ss_pred CCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 953302317999998808984079772112469998201334422788888279999428997
Q 000778 977 PTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGG 1039 (1288)
Q Consensus 977 ~~~rP~~~~~~~~~~~~i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~~~~~~ItGpNgsG 1039 (1288)
.|..|++... -|.+. |=|.+.. ...|+..+|--.. ..+++|-=.+.-|
T Consensus 192 ~yI~Pq~~~a------DI~~~--r~p~~dt----~~p~~~~~ip~~~---e~~~v~~~~~~~~ 239 (288)
T d1a7ja_ 192 HCIVPQFSQT------DINFQ--RVPVVDT----SNPFIARWIPTAD---ESVVVIRFRNPRG 239 (288)
T ss_dssp HHTGGGGGTC------SEEEE--EEESSCC----SCGGGCCSCCCGG---GEEEEEEESSCSS
T ss_pred HHHHHHHHCE------EEEEE--ECCCCCC----CCCCHHCCCCCCC---CCEEEEEECCCCC
T ss_conf 9999845203------69997--4475445----6742002579976---6679998368555
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=88.43 E-value=0.16 Score=23.73 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=22.5
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 8882799994289971388862234
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.+|.++.|||..|+||||+.+.+.-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9986999989999998999999998
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.29 E-value=0.47 Score=20.65 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=23.7
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 888279999428997138886223489
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~i~ 1051 (1288)
..|++++|+||.|+|||++.-+++..+
T Consensus 35 p~G~~~~i~G~~GsGKT~lalq~~~~~ 61 (258)
T d1v5wa_ 35 ESMAITEAFGEFRTGKTQLSHTLCVTA 61 (258)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 689799998899887889999999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.27 E-value=0.16 Score=23.78 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.6
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 882799994289971388862234
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.+++++|+||-|+|||++++.++.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 598799986999829999999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.19 E-value=0.12 Score=24.55 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=18.0
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99994289971388862234
Q 000778 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1030 ~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
++|+|+-|+||||+.|.++-
T Consensus 4 IvliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 89988999988999999999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.96 E-value=0.16 Score=23.72 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=23.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 888279999428997138886223489
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~i~ 1051 (1288)
..|+++.|+||.|+|||+++-+++...
T Consensus 21 ~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 21 ETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 599799999589999999999999999
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=87.91 E-value=0.48 Score=20.56 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=18.6
Q ss_pred CCEEEEEECCCCCHHHHHHHHH
Q ss_conf 8279999428997138886223
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1288)
Q Consensus 1027 ~~~~~ItGpNgsGKSTlLk~i~ 1048 (1288)
+.+.+|+||=|+||||++..+.
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~l 184 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKLL 184 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHHH
T ss_pred CCEEEEECCCCCCCEEHHHHHH
T ss_conf 8859997689887521699999
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=87.67 E-value=0.13 Score=24.31 Aligned_cols=64 Identities=25% Similarity=0.375 Sum_probs=38.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 27999942899713888622348988440862246544433188998730802267620011289999999999939999
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN 1107 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~~d~i~~~~Stf~~em~e~~~il~~a~~~ 1107 (1288)
..++++||-|+||||+.|.++- +.++..-. +.. .+ .. ....++.++......
T Consensus 36 ~~~L~~GPpGtGKT~lA~~la~-----~~~~~~~~----~~~----------~~-------~~--~~~~~~~~~~~~~~~ 87 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHIIAS-----ELQTNIHV----TSG----------PV-------LV--KQGDMAAILTSLERG 87 (238)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH-----HHTCCEEE----EET----------TT-------CC--SHHHHHHHHHHCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHH-----CCCCCCCC----CCC----------CC-------CC--CHHHHHHHHHHHCCC
T ss_conf 7489879999738899999985-----03888533----257----------44-------22--488899998754358
Q ss_pred CEEEEECCCCCC
Q ss_conf 499994899999
Q 000778 1108 SLVVLDELGRGT 1119 (1288)
Q Consensus 1108 sLvLlDE~grGT 1119 (1288)
..+++||.-+-.
T Consensus 88 ~~~~ide~~~~~ 99 (238)
T d1in4a2 88 DVLFIDEIHRLN 99 (238)
T ss_dssp CEEEEETGGGCC
T ss_pred CCHHHHHHHHHH
T ss_conf 824777898840
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.66 E-value=0.14 Score=24.20 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHH
Q ss_conf 7999942899713888622348
Q 000778 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~i 1050 (1288)
.++++||.|+||||+++.++-.
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHH
T ss_conf 4999889998705469999999
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=87.57 E-value=0.52 Score=20.36 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=11.5
Q ss_pred CCCEEEEEECCCCCHHH
Q ss_conf 88279999428997138
Q 000778 1026 NASFILLTGPNMGGKST 1042 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKST 1042 (1288)
+++..+|.+|.|+|||+
T Consensus 8 ~~~~~lv~~~TGsGKT~ 24 (305)
T d2bmfa2 8 KKRLTIMDLHPGAGKTK 24 (305)
T ss_dssp TTCEEEECCCTTSSTTT
T ss_pred CCCCEEEEECCCCCHHH
T ss_conf 69949999799997879
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.51 E-value=0.25 Score=22.52 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=23.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 79999428997138886223489884408622
Q 000778 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~V 1060 (1288)
+++|.|+-|+||||+++.+.- .+...|..|
T Consensus 2 lI~ieG~dGsGKST~~~~L~~--~l~~~g~~v 31 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG--AFRAAGRSV 31 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCCE
T ss_conf 899989987899999999999--998789978
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=87.50 E-value=0.18 Score=23.51 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=19.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 82799994289971388862234
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1027 ~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
+...+++|+.|.|||||++.+..
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~ 117 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINP 117 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHCC
T ss_conf 98089978898778888773053
|
| >d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Chromo domain-like family: Chromo barrel domain domain: Probable histone acetyltransferase MYST1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.44 E-value=0.52 Score=20.31 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=29.7
Q ss_pred CCCCCCEEEEECCCCCEEEEEEEEEE--CCC--CCEEEECCCCC
Q ss_conf 11266047750699907868877430--789--80899946896
Q 000778 104 DVLRKRIRVYWPLDKAWYEGCVKSFD--KEC--NKHLVQYDDGE 143 (1288)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~--~~~--~~h~v~Yddg~ 143 (1288)
--||.+|.|+|+ |+.||.+.|..-. ... ..+.|.|++=.
T Consensus 13 ~~vG~~~~v~~~-dg~~~~AkVl~~r~~~~~~~~~yyVHY~g~n 55 (133)
T d1wgsa_ 13 VEIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVGFN 55 (133)
T ss_dssp CCTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTTTC
T ss_pred EECCCEEEEEEC-CCCEEEEEEEEEEECCCCCCEEEEEECCCCC
T ss_conf 714989999938-9988677899988636688759999716886
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=87.34 E-value=0.22 Score=22.87 Aligned_cols=125 Identities=19% Similarity=-0.017 Sum_probs=52.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH-HH--CC----CCCCCCCCCC--CHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHH
Q ss_conf 7999942899713888622348988-44--08----6224654443--31889987308022676200112899999999
Q 000778 1029 FILLTGPNMGGKSTLLRQVCLAVIL-AQ--VG----ADVPAEIFEI--SPVDRIFVRMGAKDHIMAGQSTFLTELSETAL 1099 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~i~il-aq--~G----~~VPa~~~~~--~~~d~i~~rig~~d~i~~~~Stf~~em~e~~~ 1099 (1288)
+++|+||-|.|||+++|.++-...- +. .. .++.+..... ..+..+....+.... ........-...+..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ 125 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ--VRGAPALDILKALVD 125 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC--CTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCC--CCCCHHHHHHHHHHH
T ss_conf 899678999899999999999987541555678416630333346504678887653043233--345127889999999
Q ss_pred HHHHCCCCCEEEEECCCC----CCCHHHHHHHHHHHHHHH---HHCCCCEEEEECCCCHHHHH
Q ss_conf 999399994999948999----999588999999999999---74269489999189013663
Q 000778 1100 MLSSATRNSLVVLDELGR----GTSTSDGQAIAESVLEHF---VHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1100 il~~a~~~sLvLlDE~gr----GTs~~Dg~aia~aile~L---~~~~~~~~l~~TH~~~l~~~ 1155 (1288)
.........++++||... .....+.......+.+.+ .....+.+++++.+.+....
T Consensus 126 ~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~i~i~~~~~~~~~ 188 (287)
T d1w5sa2 126 NLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSY 188 (287)
T ss_dssp HHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHH
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHCCCCEEEEEECCCHHHHHH
T ss_conf 998546766541257888515665542678988999874320104565147762430899999
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.33 E-value=0.17 Score=23.69 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHH
Q ss_conf 2799994289971388862234
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
-+++|+||-||||||..+.++-
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 3999979999998999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=87.26 E-value=0.16 Score=23.77 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 79999428997138886223489884408622
Q 000778 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~V 1060 (1288)
+++|||+-||||||..+.+ ...|..|
T Consensus 5 iIgitG~igSGKStv~~~l------~~~G~~v 30 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAF------ADLGINV 30 (208)
T ss_dssp EEEEECCTTSCHHHHHHHH------HHTTCEE
T ss_pred EEEEECCCCCCHHHHHHHH------HHCCCCE
T ss_conf 9997898868899999999------9879919
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=87.21 E-value=0.23 Score=22.79 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=19.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHH
Q ss_conf 2799994289971388862234
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
-+++|.|+.|+||||+.+.+..
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHHHH
T ss_conf 8999968999987689999999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=86.66 E-value=0.18 Score=23.48 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=18.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHH
Q ss_conf 2799994289971388862234
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
-.++|.||-||||||+.+.++-
T Consensus 4 m~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 2999988999998999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=86.29 E-value=0.25 Score=22.54 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=19.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 82799994289971388862234
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1027 ~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
|-.++|+||-||||||..+.++-
T Consensus 3 ~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 63899989999988999999999
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.25 E-value=0.25 Score=22.47 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=18.6
Q ss_pred CCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 82799994289971388862234
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1027 ~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
..+++|-|+-|+||||+++.++-
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 81999989988859999999999
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=85.54 E-value=0.24 Score=22.62 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.4
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799994289971388862234
Q 000778 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
+++|.||-|+||||..+.|+-
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789998798999999999
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.26 E-value=0.26 Score=22.37 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=10.6
Q ss_pred CCCCCCHHHHHHHHHH--CCCEEEEEE
Q ss_conf 7674417589999998--299599991
Q 000778 381 GFPERNFSMNVEKLAR--KGYRVLVVE 405 (1288)
Q Consensus 381 GfPe~~l~~~~~~Lv~--~GyKVavve 405 (1288)
||.-..=...+++|++ +|+||||+.
T Consensus 10 GFLGaGKTTll~~lL~~~~~~riaVI~ 36 (222)
T d1nija1 10 GFLGAGKTTLLRHILNEQHGYKIAVIE 36 (222)
T ss_dssp ESSSSSCHHHHHHHHHSCCCCCEEEEC
T ss_pred ECCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf 488899999999998567898379997
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.22 E-value=0.22 Score=22.81 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=18.0
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99994289971388862234
Q 000778 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1030 ~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
++|+||-||||||..+.++-
T Consensus 3 I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99988999998999999999
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.14 E-value=0.27 Score=22.30 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=23.5
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 888279999428997138886223489
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~i~ 1051 (1288)
..|++++|+||-|+||||++-+++...
T Consensus 32 ~~G~~~li~G~pGsGKT~l~lq~~~~~ 58 (251)
T d1szpa2 32 ETGSITELFGEFRTGKSQLCHTLAVTC 58 (251)
T ss_dssp ESSSEEEEEESTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699699998389998899999999986
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.20 E-value=0.22 Score=22.87 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=21.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 79999428997138886223489884408
Q 000778 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~i~ilaq~G 1057 (1288)
-++|+|+.++||||+++++....+.+-+|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79999899998899999895098278888
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=83.54 E-value=0.33 Score=21.72 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHH
Q ss_conf 2799994289971388862234
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.+++|-||-|+||+|..+.|+-
T Consensus 4 piI~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 8899779998898999999999
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=83.47 E-value=0.4 Score=21.10 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=20.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 8279999428997138886223489
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1288)
Q Consensus 1027 ~~~~~ItGpNgsGKSTlLk~i~~i~ 1051 (1288)
.--++|+|+.++|||||+..+.+-.
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 7789999999989899999996788
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.38 E-value=0.4 Score=21.10 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=19.6
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 827999942899713888622348
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1288)
Q Consensus 1027 ~~~~~ItGpNgsGKSTlLk~i~~i 1050 (1288)
.=+++|.|+-||||||+.+.|...
T Consensus 27 P~iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 27 PLFIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 889983799878899999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=83.38 E-value=0.37 Score=21.37 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.3
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799994289971388862234
Q 000778 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.++|+||-||||||..+.++-
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899987999998999999999
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=83.35 E-value=0.68 Score=19.53 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 2799994289971388862234898
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVI 1052 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i~i 1052 (1288)
..+++.||.|.|||.+.|.++-..+
T Consensus 54 ~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 54 GSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 6999978886248999999999835
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=83.14 E-value=0.34 Score=21.55 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=18.5
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799994289971388862234
Q 000778 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.++|.||-||||||..+.++-
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899988999987999999999
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.73 E-value=0.33 Score=21.66 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.4
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799994289971388862234
Q 000778 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.++|+||-||||||+.+.++-
T Consensus 4 rIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999998999999999
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=82.67 E-value=0.45 Score=20.75 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=24.9
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 88827999942899713888622348988
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~i~il 1053 (1288)
..|++++|+|+.|+|||+++-+++..+..
T Consensus 32 ~~G~l~~i~G~~G~GKT~~~l~~a~~~~~ 60 (258)
T d2i1qa2 32 ESQSVTEFAGVFGSGKTQIMHQSCVNLQN 60 (258)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 28859999917999989999999999985
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=82.44 E-value=0.45 Score=20.78 Aligned_cols=25 Identities=28% Similarity=0.146 Sum_probs=21.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 8827999942899713888622348
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1288)
Q Consensus 1026 ~~~~~~ItGpNgsGKSTlLk~i~~i 1050 (1288)
+...+.||||=|+|||||+-.++..
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8159861179988899999999998
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=82.17 E-value=0.35 Score=21.46 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 27999942899713888622348
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i 1050 (1288)
..+++.||-|.||||+++.++..
T Consensus 36 ~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 73898897998788899999998
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=82.04 E-value=0.48 Score=20.56 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 8882799994289971388862234
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1025 ~~~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.+|.++.|.|+=|+|||||.|.++-
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9982999966877658899999876
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=81.39 E-value=0.5 Score=20.45 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 79999428997138886223489
Q 000778 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~i~ 1051 (1288)
.++|+|+-++|||||++.+.+.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.24 E-value=0.97 Score=18.52 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=24.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 2799994289971388862234898844086224
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVP 1061 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VP 1061 (1288)
-+++++|.-|+||||+.+.++- .+...|..++
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~--~l~~~~~~~~ 34 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR--YLNFIGVPTR 34 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHHCCCCCE
T ss_conf 8999989999999999999999--9974699973
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.17 E-value=0.41 Score=21.05 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=18.4
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799994289971388862234
Q 000778 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
.++|.||-||||||..+.++-
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899988999997999999999
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=81.15 E-value=0.78 Score=19.13 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 344227888882799994289971388862234898844086
Q 000778 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1288)
Q Consensus 1017 ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~ 1058 (1288)
-|.-+.+ .+|...+|.|+.|.||||++.+|+..+...+.++
T Consensus 34 ID~l~Pi-grGQr~~I~g~~g~GKT~l~~~i~~~~~~~~~~~ 74 (289)
T d1xpua3 34 LDLASPI-GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC 74 (289)
T ss_dssp HHHHSCC-BTTCEEEEEECSSSSHHHHHHHHHHHHHHHCTTS
T ss_pred EEECCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 6412564-5787556867999887899999999775158976
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=81.05 E-value=0.46 Score=20.70 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=19.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHH
Q ss_conf 2799994289971388862234
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
--++|+|..++|||||+..+..
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999898999999966
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=80.75 E-value=0.43 Score=20.89 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=18.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHH
Q ss_conf 2799994289971388862234
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
-.++|+||-||||||+.+.++-
T Consensus 7 mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 1699988999987999999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=80.67 E-value=0.43 Score=20.88 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.5
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 799994289971388862234
Q 000778 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
-++|+|+.++|||||++.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~ 24 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNG 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHCC
T ss_conf 999999999899999999808
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=80.56 E-value=0.42 Score=20.95 Aligned_cols=11 Identities=36% Similarity=0.782 Sum_probs=5.8
Q ss_pred CCCCEEEEECC
Q ss_conf 99949999489
Q 000778 1105 TRNSLVVLDEL 1115 (1288)
Q Consensus 1105 ~~~sLvLlDE~ 1115 (1288)
.....+.+||.
T Consensus 248 ~~~~~~~~dei 258 (443)
T d1g41a_ 248 EQNGIVFIDEI 258 (443)
T ss_dssp HHHCEEEEETG
T ss_pred HCCCCCCCCHH
T ss_conf 42675554223
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=80.55 E-value=0.49 Score=20.52 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=17.6
Q ss_pred CEEEEEECCCCCHHHHHHHHH
Q ss_conf 279999428997138886223
Q 000778 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLk~i~ 1048 (1288)
.+++|||+-||||||..+.+.
T Consensus 2 ~iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899997999988999999999
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=80.15 E-value=0.19 Score=23.35 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 82799994289971388862234
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1027 ~~~~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
+...+++|+.|.|||||++.+..
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~ 119 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISP 119 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHCC
T ss_conf 56499987787348789875151
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=80.10 E-value=0.49 Score=20.54 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=18.3
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99994289971388862234
Q 000778 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1030 ~~ItGpNgsGKSTlLk~i~~ 1049 (1288)
++|+|+-++|||||++.+..
T Consensus 3 ivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999898999999965
|