Citrus Sinensis ID: 000789
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1283 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M0M2 | 1236 | ABC transporter B family | yes | no | 0.957 | 0.994 | 0.736 | 0.0 | |
| Q9FHF1 | 1248 | ABC transporter B family | no | no | 0.959 | 0.986 | 0.682 | 0.0 | |
| Q9FWX7 | 1278 | ABC transporter B family | no | no | 0.961 | 0.965 | 0.655 | 0.0 | |
| O80725 | 1286 | ABC transporter B family | no | no | 0.964 | 0.961 | 0.654 | 0.0 | |
| Q9M1Q9 | 1296 | ABC transporter B family | no | no | 0.962 | 0.952 | 0.642 | 0.0 | |
| Q9FWX8 | 1273 | ABC transporter B family | no | no | 0.984 | 0.992 | 0.634 | 0.0 | |
| Q9SYI3 | 1230 | ABC transporter B family | no | no | 0.950 | 0.991 | 0.613 | 0.0 | |
| Q9SYI2 | 1229 | ABC transporter B family | no | no | 0.952 | 0.994 | 0.619 | 0.0 | |
| Q9LJX0 | 1252 | ABC transporter B family | no | no | 0.949 | 0.972 | 0.450 | 0.0 | |
| Q8LPK2 | 1273 | ABC transporter B family | no | no | 0.958 | 0.966 | 0.434 | 0.0 |
| >sp|Q9M0M2|AB9B_ARATH ABC transporter B family member 9 OS=Arabidopsis thaliana GN=ABCB9 PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 1841 bits (4769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 930/1263 (73%), Positives = 1083/1263 (85%), Gaps = 34/1263 (2%)
Query: 24 NNNKNDGNDNQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGS 83
++ KNDG NQKV F+KLF+FADK D VLM VGTI+A G+GL PFMTLIFG LIN+FG+
Sbjct: 5 SSKKNDGG-NQKVSFFKLFSFADKTDVVLMTVGTIAAAGNGLTQPFMTLIFGQLINAFGT 63
Query: 84 SDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIG 143
+D H+V EV KVAVKF+YLA + + AFLQVSCWMVTGERQ+ IRGLYLKTILRQDIG
Sbjct: 64 TDPDHMVREVWKVAVKFIYLAVYSCVVAFLQVSCWMVTGERQSATIRGLYLKTILRQDIG 123
Query: 144 FFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLA 203
+FDTET TGEVIGRMSGDTILIQ+AMGEKVGKF QL+ TF GGF +A +G LA VL +
Sbjct: 124 YFDTETNTGEVIGRMSGDTILIQDAMGEKVGKFTQLLCTFLGGFAIAFYKGPLLAGVLCS 183
Query: 204 CLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNK 263
C+P IVIAG +M+LIMSKM+ RGQ+AY+EAG VVEQTV IRTV +FTGEKQA EKY +K
Sbjct: 184 CIPLIVIAGAAMSLIMSKMAGRGQVAYAEAGNVVEQTVGAIRTVVAFTGEKQATEKYESK 243
Query: 264 LQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMT 323
L++AY+ VQQG++SG GLG ++ + +YGLAVWYG+KLI+EKGYNGG VINVI A++T
Sbjct: 244 LEIAYKTVVQQGLISGFGLGTMLAVIFCSYGLAVWYGAKLIMEKGYNGGQVINVIFAVLT 303
Query: 324 GGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFR 383
GGMSLGQTSP LNAFA G+AAA+KMFETIKR PKID YD SG LE I G+IEL+DVYFR
Sbjct: 304 GGMSLGQTSPSLNAFAAGRAAAFKMFETIKRSPKIDAYDMSGSVLEDIRGDIELKDVYFR 363
Query: 384 YPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKK 443
YPARP+VQIFAGFSL VP+G T ALVGQSGSGKSTVISL+ERFYDP++G+VLID ID+KK
Sbjct: 364 YPARPDVQIFAGFSLFVPNGKTVALVGQSGSGKSTVISLIERFYDPESGQVLIDNIDLKK 423
Query: 444 LQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGL 503
LQLKWIR KIGLVSQEP+LFAT+++ENIAYGKE+ATDQEIRTAIELANAAKFIDKLP+GL
Sbjct: 424 LQLKWIRSKIGLVSQEPVLFATTIKENIAYGKEDATDQEIRTAIELANAAKFIDKLPQGL 483
Query: 504 DTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR 563
DTM GEHGTQ+SGGQKQR+AIARAILKNPKILLLDEATSALDAESERIVQDALV +M++R
Sbjct: 484 DTMVGEHGTQMSGGQKQRLAIARAILKNPKILLLDEATSALDAESERIVQDALVNLMSNR 543
Query: 564 TTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDAL 623
TTVVVAHRLTTIR AD+IAVVHQGKIVEKGTHDE+I+DPEG Y+QLVRLQEGSKE
Sbjct: 544 TTVVVAHRLTTIRTADVIAVVHQGKIVEKGTHDEMIQDPEGAYSQLVRLQEGSKEE---- 599
Query: 624 ATDADKLDSSFDILDKAMTRSGS--RGESMRRSISRHSSGSRHSFGFTYGVPGP-INVFE 680
AT++++ ++S D+ RSGS +MRRS+SR+SS SRHSF + P +NV +
Sbjct: 600 ATESERPETSLDV-----ERSGSLRLSSAMRRSVSRNSSSSRHSFSLASNMFFPGVNVNQ 654
Query: 681 TEEGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLS 740
T+E + E + + +K+S++RLA+LNKPE PVL++GSIAA +HG +FPIFGLLLS
Sbjct: 655 TDEMED---EENNV---RHKKVSLKRLAHLNKPEIPVLVLGSIAAMVHGTVFPIFGLLLS 708
Query: 741 SSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEK 800
SSI MF+EP L+KDS FWALIY+ LG+ N + +P QNYFFG+AGGKLI+RIRS+ F+K
Sbjct: 709 SSINMFYEPAKILKKDSHFWALIYIALGLTNFVMIPVQNYFFGIAGGKLIKRIRSMCFDK 768
Query: 801 VVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANW 860
VVHQEISWFDD ANS RSLVGD+LAL+VQNIAT+ GLIIAFTANW
Sbjct: 769 VVHQEISWFDDTANS---------------RSLVGDALALIVQNIATVTTGLIIAFTANW 813
Query: 861 ILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEK 920
ILA ++LA+SP +++QGY QTKF+ GFSADAK MYEEASQVANDAV SIRTVASFC+EEK
Sbjct: 814 ILALIVLALSPFIVIQGYAQTKFLTGFSADAKAMYEEASQVANDAVSSIRTVASFCAEEK 873
Query: 921 VMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVF 980
VMDLY++KC+GP KNGVR G+LSGAGFGFSF LYC N CF G+ L++ GKATFG+VF
Sbjct: 874 VMDLYQQKCDGPKKNGVRLGLLSGAGFGFSFFFLYCINCVCFVSGAGLIQIGKATFGEVF 933
Query: 981 KVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAI 1040
KVFFALTI A+GVSQTSAMAPD+ KAKDSAASIF+ILDS PKIDSS DEG TL +V G I
Sbjct: 934 KVFFALTIMAIGVSQTSAMAPDSNKAKDSAASIFDILDSTPKIDSSSDEGTTLQNVNGDI 993
Query: 1041 ELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVL 1100
E R VSF+YP RPDVQIFR+LCL+IPSGKTVALVGESGSGKSTVI++IERFY+PDSG +L
Sbjct: 994 EFRHVSFRYPMRPDVQIFRDLCLTIPSGKTVALVGESGSGKSTVISMIERFYNPDSGKIL 1053
Query: 1101 LDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHN 1160
+D +E+ FKLSWLRQQMGLVSQEP+LFNETIR+NIAYGK GGATEEEIIAA +A+NAHN
Sbjct: 1054 IDQVEIQTFKLSWLRQQMGLVSQEPILFNETIRSNIAYGKTGGATEEEIIAAAKAANAHN 1113
Query: 1161 FISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQD 1220
FIS+LP GY+T+VGERGVQLSGGQKQRIAIARA+LK+PKILLLDEATSALDAESERVVQD
Sbjct: 1114 FISSLPQGYDTSVGERGVQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQD 1173
Query: 1221 ALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHV 1280
AL+RVMVNRTTVVVAHRLTTIKNAD+IAVVKNGVIAE+G H+ LMKI+ GAYASLV LH+
Sbjct: 1174 ALDRVMVNRTTVVVAHRLTTIKNADVIAVVKNGVIAEKGRHETLMKISGGAYASLVTLHM 1233
Query: 1281 SSS 1283
S++
Sbjct: 1234 SAN 1236
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FHF1|AB7B_ARATH ABC transporter B family member 7 OS=Arabidopsis thaliana GN=ABCB7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1761 bits (4562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 855/1252 (68%), Positives = 1037/1252 (82%), Gaps = 21/1252 (1%)
Query: 34 QKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEV 93
Q++ FYKLF FAD+ D VLM++GT+SA+ +GL PFM+++ G LIN FG SD HV EV
Sbjct: 16 QRIAFYKLFTFADRYDIVLMVIGTLSAMANGLTQPFMSILMGQLINVFGFSDHDHVFKEV 75
Query: 94 SKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGE 153
SKVAVKFLYLAA G+ +FLQVSCWMVTGERQ+TRIR LYLKTILRQDIGFFDTET TGE
Sbjct: 76 SKVAVKFLYLAAYAGVVSFLQVSCWMVTGERQSTRIRRLYLKTILRQDIGFFDTETNTGE 135
Query: 154 VIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGG 213
VIGRMSGDTILIQ++MGEKVGKF QL+S+F GGF VA G L L LL C+P IV GG
Sbjct: 136 VIGRMSGDTILIQDSMGEKVGKFTQLVSSFVGGFTVAFIVGMKLTLALLPCVPLIVGTGG 195
Query: 214 SMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQ 273
+M IMSK + R Q+AY+EAG VV+Q V IRTV +FTGEKQ++ KY KL++AY++ V+
Sbjct: 196 AMTYIMSKKAQRVQLAYTEAGNVVQQAVGSIRTVVAFTGEKQSMGKYEKKLEIAYKSMVK 255
Query: 274 QGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSP 333
QG+ SG+G+G++M+ V TYG A+WYG++ IIEKGY GG V+NVI +I+TGGM+LGQT P
Sbjct: 256 QGLYSGLGIGIMMVVVYCTYGFAIWYGARQIIEKGYTGGQVMNVITSILTGGMALGQTLP 315
Query: 334 CLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIF 393
LN+FA G AAAYKMFETIKRKPKID YD SG LE+I+G+IELRDVYFRYPARP+VQIF
Sbjct: 316 SLNSFAAGTAAAYKMFETIKRKPKIDAYDMSGEVLEEIKGDIELRDVYFRYPARPDVQIF 375
Query: 394 AGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453
GFSL VP+G T ALVGQSGSGKSTVISL+ERFYDP++GEVLIDGID+KK Q+KWIR KI
Sbjct: 376 VGFSLTVPNGMTVALVGQSGSGKSTVISLIERFYDPESGEVLIDGIDLKKFQVKWIRSKI 435
Query: 454 GLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQ 513
GLVSQEPILFAT++RENI YGK++A+DQEIRTA++LANA+ FIDKLP+GL+TM GEHGTQ
Sbjct: 436 GLVSQEPILFATTIRENIVYGKKDASDQEIRTALKLANASNFIDKLPQGLETMVGEHGTQ 495
Query: 514 LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLT 573
LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVK+M SRTTVVVAHRLT
Sbjct: 496 LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKLMLSRTTVVVAHRLT 555
Query: 574 TIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSS 633
TIR AD+IAVV QGK++EKGTHDE+IKDPEG Y+QLVRLQEGSK+ E+A+ + +K + S
Sbjct: 556 TIRTADMIAVVQQGKVIEKGTHDEMIKDPEGTYSQLVRLQEGSKK-EEAIDKEPEKCEMS 614
Query: 634 FDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFT--YGVPGPINVFETEEGDQGGAER 691
+I S S HS T G+PG I++ +TEE + +
Sbjct: 615 LEIE------------------SSDSQNGIHSGTLTSPSGLPGVISLDQTEEFHENISST 656
Query: 692 TPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPED 751
++K +++S+RRLA+LNKPE VLL+GS+AA IHG++FP+ GLLLS +IR+FFEP +
Sbjct: 657 KTQTVKKGKEVSLRRLAHLNKPEISVLLLGSLAAVIHGIVFPVQGLLLSRTIRIFFEPSN 716
Query: 752 KLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDD 811
KL+ DS FWALI++ LG+ +LI +P QNY F +AG KLI+RIRSL+F++V+HQ+ISWFDD
Sbjct: 717 KLKNDSLFWALIFVALGLTDLIVIPLQNYLFAIAGAKLIKRIRSLSFDRVLHQDISWFDD 776
Query: 812 PANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSP 871
NSSG +GARLSTDAST++S+VGD L L++QN+ATI IIAFTANW+LA + L V+P
Sbjct: 777 TKNSSGVIGARLSTDASTVKSIVGDVLGLIMQNMATIIGAFIIAFTANWLLALMALLVAP 836
Query: 872 LMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEG 931
+M QGY Q KF+ GF A A+ YEEASQVA+DAV SIRTVASFC+E+KVMDLY++KC+
Sbjct: 837 VMFFQGYYQIKFITGFGAKARGKYEEASQVASDAVSSIRTVASFCAEDKVMDLYQEKCDE 896
Query: 932 PLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISAL 991
P + G + G++SG +G S+L LY + CF GS L+++ +ATFG+ F+VFFALT++A+
Sbjct: 897 PKQQGFKLGLVSGLCYGGSYLALYVIESVCFLGGSWLIQNRRATFGEFFQVFFALTLTAV 956
Query: 992 GVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPT 1051
GV+QTS MAPD KAKDSAASIF+ILDSKPKIDSS ++G L V G IEL+ VSF+YP
Sbjct: 957 GVTQTSTMAPDINKAKDSAASIFDILDSKPKIDSSSEKGTILPIVHGDIELQHVSFRYPM 1016
Query: 1052 RPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKL 1111
RPD+QIF +LCL+I SG+TVALVGESGSGKSTVI+L+ERFYDPDSG +LLD +E+ KL
Sbjct: 1017 RPDIQIFSDLCLTISSGQTVALVGESGSGKSTVISLLERFYDPDSGKILLDQVEIQSLKL 1076
Query: 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYET 1171
SWLR+QMGLVSQEPVLFNETI +NIAYGK GGATEEEII A +A+N HNFIS+LP GYET
Sbjct: 1077 SWLREQMGLVSQEPVLFNETIGSNIAYGKIGGATEEEIITAAKAANVHNFISSLPQGYET 1136
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTT 1231
+VGERGVQLSGGQKQRIAIARA+LK+PKILLLDEATSALDAESERVVQDAL++VMVNRTT
Sbjct: 1137 SVGERGVQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQDALDQVMVNRTT 1196
Query: 1232 VVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVSSS 1283
VVVAH LTTIK+AD+IAVVKNGVIAE G H+ LM+I+ GAYASLVA ++S++
Sbjct: 1197 VVVAHLLTTIKDADMIAVVKNGVIAESGRHETLMEISGGAYASLVAFNMSAN 1248
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1664 bits (4309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 820/1251 (65%), Positives = 1017/1251 (81%), Gaps = 17/1251 (1%)
Query: 36 VPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFG-SSDRSHVVHEVS 94
VPFYKLFAFAD D +LMI G+I AIG+G++ PFMTL+FG LI+SFG + + +V VS
Sbjct: 41 VPFYKLFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLFGDLIDSFGKNQNNKDIVDVVS 100
Query: 95 KVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEV 154
KV +KF+YL GT AAFLQV+CWM+TGERQA RIR YLKTILRQDIGFFD ET TGEV
Sbjct: 101 KVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSTYLKTILRQDIGFFDVETNTGEV 160
Query: 155 IGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGS 214
+GRMSGDT+LIQ+AMGEKVGKFIQL+STF GGFV+A +GW L LV+L +P + +AG +
Sbjct: 161 VGRMSGDTVLIQDAMGEKVGKFIQLVSTFVGGFVLAFIKGWLLTLVMLTSIPLLAMAGAA 220
Query: 215 MALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQ 274
MALI+++ SSRGQ AY++A TVVEQT+ IRTV+SFTGEKQAI Y + AY++++QQ
Sbjct: 221 MALIVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSYKKFITSAYKSSIQQ 280
Query: 275 GMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPC 334
G +G+GLGV+ +Y LA+W+G K+I+EKGY GG VINVI+ ++ G MSLGQTSPC
Sbjct: 281 GFSTGLGLGVMFFVFFSSYALAIWFGGKMILEKGYTGGAVINVIIIVVAGSMSLGQTSPC 340
Query: 335 LNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFA 394
+ AFA GQAAAYKMFETIKRKP ID YD +G LE I G+IEL+DV+F YPARP+ +IF
Sbjct: 341 VTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLEDIRGDIELKDVHFSYPARPDEEIFD 400
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454
GFSL +PSG TAALVG+SGSGKSTVISL+ERFYDP +G VLIDG+++K+ QLKWIR KIG
Sbjct: 401 GFSLFIPSGATAALVGESGSGKSTVISLIERFYDPKSGAVLIDGVNLKEFQLKWIRSKIG 460
Query: 455 LVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQL 514
LVSQEP+LF++S+ ENIAYGKENAT +EI+ A ELANAAKFIDKLP+GLDTM GEHGTQL
Sbjct: 461 LVSQEPVLFSSSIMENIAYGKENATVEEIKAATELANAAKFIDKLPQGLDTMVGEHGTQL 520
Query: 515 SGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTT 574
SGGQKQRIAIARAILK+P+ILLLDEATSALDAESER+VQ+AL ++M +RTTV+VAHRL+T
Sbjct: 521 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMVNRTTVIVAHRLST 580
Query: 575 IRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSSF 634
+RNAD+IAV+H+GK+VEKG+H EL+KD EG Y+QL+RLQE +K+ + + + +S
Sbjct: 581 VRNADMIAVIHRGKMVEKGSHSELLKDSEGAYSQLIRLQEINKDVKTSELSSGSSFRNSN 640
Query: 635 DILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQGGAERTPL 694
L K+M + S G S SRH S + G T G+ + + + G A + PL
Sbjct: 641 --LKKSMEGTSSVGNS-----SRHH--SLNVLGLTTGLDLGSHSQRAGQDETGTASQEPL 691
Query: 695 MIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLR 754
K+S+ R+A LNKPE PVLL+G++AA I+G IFP+FG+L+S I FF+P +L+
Sbjct: 692 -----PKVSLTRIAALNKPEIPVLLLGTVAAAINGAIFPLFGILISRVIEAFFKPAHELK 746
Query: 755 KDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPAN 814
+DSRFWA+I++ LG+ +LI P Q Y F VAGGKLIRRIRS+ FEK VH E++WFD+P N
Sbjct: 747 RDSRFWAIIFVALGVTSLIVSPTQMYLFAVAGGKLIRRIRSMCFEKAVHMEVAWFDEPQN 806
Query: 815 SSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLML 874
SSG++GARLS DA+ IR+LVGD+L+L VQN+A+ A+GLIIAFTA+W LA +IL + PL+
Sbjct: 807 SSGTMGARLSADATLIRALVGDALSLAVQNVASAASGLIIAFTASWELALIILVMLPLIG 866
Query: 875 VQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLK 934
+ G+ Q KFMKGFSADAK YEEASQVANDAVGSIRTVASFC+EEKVM +Y+K+CEGP+K
Sbjct: 867 INGFVQVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFCAEEKVMQMYKKQCEGPIK 926
Query: 935 NGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVS 994
+G+++G +SG GFGFSF +L+C A FY G+ LVE GK TF VF+VFFALT++A+G+S
Sbjct: 927 DGIKQGFISGLGFGFSFFILFCVYATSFYAGARLVEDGKTTFNNVFQVFFALTMAAIGIS 986
Query: 995 QTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPD 1054
Q+S APD++KAK +AASIF I+D K KIDSS + G L +V G IELR +SF YP RPD
Sbjct: 987 QSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENVKGDIELRHLSFTYPARPD 1046
Query: 1055 VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWL 1114
+QIFR+LCL+I +GKTVALVGESGSGKSTVI+L++RFYDPDSGH+ LD +EL K +L WL
Sbjct: 1047 IQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKLQLKWL 1106
Query: 1115 RQQMGLVSQEPVLFNETIRTNIAYGK--QGGATEEEIIAATEASNAHNFISALPHGYETN 1172
RQQMGLV QEPVLFN+TIR NIAYGK + ATE EIIAA E +NAH FIS++ GY+T
Sbjct: 1107 RQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELANAHKFISSIQQGYDTV 1166
Query: 1173 VGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTV 1232
VGERG+QLSGGQKQR+AIARA++K PKILLLDEATSALDAESERVVQDAL+RVMVNRTT+
Sbjct: 1167 VGERGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTI 1226
Query: 1233 VVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVSSS 1283
VVAHRL+TIKNAD+IAVVKNGVIAE+G+H+ L+KI G YASLV LH+++S
Sbjct: 1227 VVAHRLSTIKNADVIAVVKNGVIAEKGTHETLIKIEGGVYASLVQLHMTAS 1277
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O80725|AB4B_ARATH ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1660 bits (4299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 819/1251 (65%), Positives = 1025/1251 (81%), Gaps = 14/1251 (1%)
Query: 36 VPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSK 95
VPFYKLFAFAD D +LMI+GT+ +IG+GL P MTL+FG LI++FG ++++ +VSK
Sbjct: 46 VPFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLIDAFGE-NQTNTTDKVSK 104
Query: 96 VAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVI 155
VA+KF++L GT AAFLQ+S WM++GERQA RIR LYLKTILRQDI FFD +T TGEV+
Sbjct: 105 VALKFVWLGIGTFAAAFLQLSGWMISGERQAARIRSLYLKTILRQDIAFFDIDTNTGEVV 164
Query: 156 GRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSM 215
GRMSGDT+LIQ+AMGEKVGK IQL++TF GGFV+A RGW L LV+L+ +P +V+AG +
Sbjct: 165 GRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFVRGWLLTLVMLSSIPLLVMAGALL 224
Query: 216 ALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQG 275
A++++K +SRGQ AY++A TVVEQT+ IRTV+SFTGEKQAI YN L AY+A V +G
Sbjct: 225 AIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTGEKQAISNYNKHLVTAYKAGVIEG 284
Query: 276 MVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCL 335
+G+GLG L L V +Y LAVWYG KLI++KGY GG V+N+I+A++TG MSLGQTSPCL
Sbjct: 285 GSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGGQVLNIIIAVLTGSMSLGQTSPCL 344
Query: 336 NAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAG 395
+AFA GQAAAYKMFETI+R+P ID Y T+G L+ I+G+IEL+DVYF YPARP+ QIF G
Sbjct: 345 SAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIELKDVYFTYPARPDEQIFRG 404
Query: 396 FSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGL 455
FSL + SGTT ALVGQSGSGKSTV+SL+ERFYDP AG+VLIDGI++K+ QLKWIR KIGL
Sbjct: 405 FSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLIDGINLKEFQLKWIRSKIGL 464
Query: 456 VSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLS 515
VSQEP+LF S+++NIAYGKE+AT +EI+ A ELANA+KF+DKLP+GLDTM GEHGTQLS
Sbjct: 465 VSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFVDKLPQGLDTMVGEHGTQLS 524
Query: 516 GGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTI 575
GGQKQRIA+ARAILK+P+ILLLDEATSALDAESER+VQ+AL +IM +RTTVVVAHRL+T+
Sbjct: 525 GGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTV 584
Query: 576 RNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSSFD 635
RNAD+IAV+HQGKIVEKG+H EL+KDPEG Y+QL+RLQE K E+A + K+ SS +
Sbjct: 585 RNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRLQEEKKSDENA--AEEQKM-SSIE 641
Query: 636 ILDKAMTRSGSRGESMRRSISRHSSGSRHSF---GFTYGVPGPINVFETEEGDQGGAERT 692
++ R S G S+ + S + SRHSF GF G+ G NV + +E D +T
Sbjct: 642 SFKQSSLRKSSLGRSLSKGGSSRGNSSRHSFNMFGFPAGIDG--NVVQDQEEDDTTQPKT 699
Query: 693 PLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDK 752
+ +K+S+ R+A LNKPE PVL++GSI+A +GVI PIFG+L+SS I+ FF+P K
Sbjct: 700 -----EPKKVSIFRIAALNKPEIPVLILGSISAAANGVILPIFGILISSVIKAFFQPPKK 754
Query: 753 LRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDP 812
L++D+ FWA+I++VLG ++IA P Q +FF +AG KL++RIRS+ FEKVVH E+ WFD+P
Sbjct: 755 LKEDTSFWAIIFMVLGFASIIAYPAQTFFFAIAGCKLVQRIRSMCFEKVVHMEVGWFDEP 814
Query: 813 ANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPL 872
NSSG++GARLS DA+TIR LVGDSLA VQN+++I AGLIIAF A W LAFV+LA+ PL
Sbjct: 815 ENSSGTIGARLSADAATIRGLVGDSLAQTVQNLSSILAGLIIAFLACWQLAFVVLAMLPL 874
Query: 873 MLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGP 932
+ + G+ KFMKGFSADAK MY EASQVANDAVGSIRTVASFC+E+KVM++Y KKCEGP
Sbjct: 875 IALNGFLYMKFMKGFSADAKKMYGEASQVANDAVGSIRTVASFCAEDKVMNMYSKKCEGP 934
Query: 933 LKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALG 992
+KNG+R+GI+SG GFGFSF VL+ + A FY+G+ LV+ GK TF VF+VFFALT++A+
Sbjct: 935 MKNGIRQGIVSGIGFGFSFFVLFSSYAASFYVGARLVDDGKTTFDSVFRVFFALTMAAMA 994
Query: 993 VSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTR 1052
+SQ+S+++PD++KA +AASIF I+D + KID S + G L +V G IELR VSFKYP R
Sbjct: 995 ISQSSSLSPDSSKADVAAASIFAIMDRESKIDPSVESGRVLDNVKGDIELRHVSFKYPAR 1054
Query: 1053 PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLS 1112
PDVQIF++LCLSI +GKTVALVGESGSGKSTVIAL++RFYDPDSG + LD +E+ +L
Sbjct: 1055 PDVQIFQDLCLSIRAGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGVEIKSLRLK 1114
Query: 1113 WLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETN 1172
WLRQQ GLVSQEP+LFNETIR NIAYGK G A+E EI+++ E SNAH FIS L GY+T
Sbjct: 1115 WLRQQTGLVSQEPILFNETIRANIAYGKGGDASESEIVSSAELSNAHGFISGLQQGYDTM 1174
Query: 1173 VGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTV 1232
VGERG+QLSGGQKQR+AIARA++K+PK+LLLDEATSALDAESERVVQDAL+RVMVNRTT+
Sbjct: 1175 VGERGIQLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTI 1234
Query: 1233 VVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVSSS 1283
VVAHRL+TIKNAD+IAVVKNGVI E+G HD L+ I DG YASLV LH++++
Sbjct: 1235 VVAHRLSTIKNADVIAVVKNGVIVEKGKHDTLINIKDGVYASLVQLHLTAA 1285
|
Auxin influx transporter that mediates the transport of auxin in roots. Contributes to the basipetal transport in hypocotyls and root tips by establishing an auxin uptake sink in the root cap. Confers sensitivity to 1-N-naphthylphthalamic acid (NPA). Regulates the root elongation, the initiation of lateral roots and the development of root hairs. Can transports IAA, indole-3-propionic acid, NPA syringic acid, vanillic acid and some auxin metabolites, but not 2,4-D and 1-naphthaleneacetic acid. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1Q9|AB21B_ARATH ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1620 bits (4195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 804/1252 (64%), Positives = 1011/1252 (80%), Gaps = 17/1252 (1%)
Query: 33 NQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSS-DRSHVVH 91
+ VPF+KLFAFAD D +LMI+GTI A+G+GL P MT++FG +I+ FG + + S V
Sbjct: 60 TKTVPFHKLFAFADSFDIILMILGTIGAVGNGLGFPIMTILFGDVIDVFGQNQNSSDVSD 119
Query: 92 EVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTT 151
+++KVA+KF+YL GT +AA LQVS WM++GERQA RIR LYL+TILRQDI FFD ET T
Sbjct: 120 KIAKVALKFVYLGLGTLVAALLQVSGWMISGERQAGRIRSLYLQTILRQDIAFFDVETNT 179
Query: 152 GEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIA 211
GEV+GRMSGDT+LIQ+AMGEKVGK IQL+STF GGFV+A GW L LV+++ +P +V++
Sbjct: 180 GEVVGRMSGDTVLIQDAMGEKVGKAIQLVSTFIGGFVIAFTEGWLLTLVMVSSIPLLVMS 239
Query: 212 GGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAA 271
G ++A+++SKM+SRGQ +Y++A VVEQTV IRTV+SFTGEKQAI YN L AYRA
Sbjct: 240 GAALAIVISKMASRGQTSYAKAAVVVEQTVGSIRTVASFTGEKQAISNYNKHLVSAYRAG 299
Query: 272 VQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQT 331
V +G +G+GLG L + + TY LAVWYG K+I+EKGY GG V+ +I A++TG MSLGQ
Sbjct: 300 VFEGASTGLGLGTLNIVIFCTYALAVWYGGKMILEKGYTGGQVLIIIFAVLTGSMSLGQA 359
Query: 332 SPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQ 391
SPCL+AFA GQAAAYKMFE IKRKP+ID DT+G L+ I G+IEL +V F YPARPE Q
Sbjct: 360 SPCLSAFAAGQAAAYKMFEAIKRKPEIDASDTTGKVLDDIRGDIELNNVNFSYPARPEEQ 419
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
IF GFSL + SG+T ALVGQSGSGKSTV+SL+ERFYDP +GEV IDGI++K+ QLKWIR
Sbjct: 420 IFRGFSLSISSGSTVALVGQSGSGKSTVVSLIERFYDPQSGEVRIDGINLKEFQLKWIRS 479
Query: 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHG 511
KIGLVSQEP+LF +S++ENIAYGKENAT +EIR A ELANA+KFIDKLP+GLDTM GEHG
Sbjct: 480 KIGLVSQEPVLFTSSIKENIAYGKENATVEEIRKATELANASKFIDKLPQGLDTMVGEHG 539
Query: 512 TQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHR 571
TQLSGGQKQRIA+ARAILK+P+ILLLDEATSALDAESERIVQ+AL +IM +RTTVVVAHR
Sbjct: 540 TQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVVAHR 599
Query: 572 LTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLD 631
L+T+RNAD+IAV+HQGKIVEKG+H EL++DPEG Y+QL+RLQE +K+ ED+ TD KL
Sbjct: 600 LSTVRNADMIAVIHQGKIVEKGSHSELLRDPEGAYSQLIRLQEDTKQTEDS--TDEQKL- 656
Query: 632 SSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQGGAER 691
S + + ++ R S S+ + S S +G P I+ ++
Sbjct: 657 -SMESMKRSSLRKSSLSRSLSKRSSSFS---------MFGFPAGIDTNNEAIPEKDIKVS 706
Query: 692 TPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPED 751
TP+ K +K+S R+A LNKPE P+L++GSIAA ++GVI PIFG+L+SS I+ FF+P +
Sbjct: 707 TPI---KEKKVSFFRVAALNKPEIPMLILGSIAAVLNGVILPIFGILISSVIKAFFKPPE 763
Query: 752 KLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDD 811
+L+ D+RFWA+I+++LG+ +++ P Q FF +AG KL++RIRS+ FEKVV E+ WFD+
Sbjct: 764 QLKSDTRFWAIIFMLLGVASMVVFPAQTIFFSIAGCKLVQRIRSMCFEKVVRMEVGWFDE 823
Query: 812 PANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSP 871
NSSG++GARLS DA+T+R LVGD+LA VQN+A++ AGL+IAF A+W LAF++LA+ P
Sbjct: 824 TENSSGAIGARLSADAATVRGLVGDALAQTVQNLASVTAGLVIAFVASWQLAFIVLAMLP 883
Query: 872 LMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEG 931
L+ + GY KFM GFSADAK MYEEASQVANDAVGSIRTVASFC+EEKVM +Y+KKCEG
Sbjct: 884 LIGLNGYIYMKFMVGFSADAKRMYEEASQVANDAVGSIRTVASFCAEEKVMKMYKKKCEG 943
Query: 932 PLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISAL 991
P++ G+R+GI+SG GFG SF VL+ + A FY G+ LV+ GK TF VF+VFFALT++A+
Sbjct: 944 PMRTGIRQGIVSGIGFGVSFFVLFSSYAASFYAGARLVDDGKTTFDSVFRVFFALTMAAV 1003
Query: 992 GVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPT 1051
+SQ+S+++PD++KA ++AASIF ++D + KID S + G L +V G IELR +SFKYP+
Sbjct: 1004 AISQSSSLSPDSSKASNAAASIFAVIDRESKIDPSDESGRVLDNVKGDIELRHISFKYPS 1063
Query: 1052 RPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKL 1111
RPDVQIF++LCLSI +GKT+ALVGESGSGKSTVIAL++RFYDPDSG + LD +E+ +L
Sbjct: 1064 RPDVQIFQDLCLSIRAGKTIALVGESGSGKSTVIALLQRFYDPDSGQITLDGVEIKTLQL 1123
Query: 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYET 1171
WLRQQ GLVSQEPVLFNETIR NIAYGK G ATE EI++A E SNAH FIS L GY+T
Sbjct: 1124 KWLRQQTGLVSQEPVLFNETIRANIAYGKGGDATETEIVSAAELSNAHGFISGLQQGYDT 1183
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTT 1231
VGERGVQLSGGQKQR+AIARA++K+PK+LLLDEATSALDAESERVVQDAL+RVMVNRTT
Sbjct: 1184 MVGERGVQLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTT 1243
Query: 1232 VVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVSSS 1283
VVVAHRL+TIKNAD+IAVVKNGVI E+G H+ L+ I DG YASLV LH+S+S
Sbjct: 1244 VVVAHRLSTIKNADVIAVVKNGVIVEKGKHETLINIKDGVYASLVQLHLSAS 1295
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWX8|AB12B_ARATH ABC transporter B family member 12 OS=Arabidopsis thaliana GN=ABCB12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1614 bits (4180), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 810/1276 (63%), Positives = 1008/1276 (78%), Gaps = 13/1276 (1%)
Query: 13 GIKRGDNNNNINNNKNDGNDNQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTL 72
G GD+ ++ ++ + VP YKLFAFAD D LMI G++ AIG+G+ P MTL
Sbjct: 5 GAGEGDSVSHEHSTSKTDEKAKTVPLYKLFAFADSFDVFLMICGSLGAIGNGVCLPLMTL 64
Query: 73 IFGHLINSFG-SSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRG 131
+FG LI+SFG + + +V VSKV +KF+YL G AAFLQV+CWM+TGERQA +IR
Sbjct: 65 LFGDLIDSFGKNQNNKDIVDVVSKVCLKFVYLGLGRLGAAFLQVACWMITGERQAAKIRS 124
Query: 132 LYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVAL 191
YLKTILRQDIGFFD ET TGEV+GRMSGDT+ IQ+AMGEKVGKFIQL+STF GGF +A
Sbjct: 125 NYLKTILRQDIGFFDVETNTGEVVGRMSGDTVHIQDAMGEKVGKFIQLVSTFVGGFALAF 184
Query: 192 ARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFT 251
A+GW L LV+L +P + +AG +MAL++++ SSRGQ AY++A TVVEQT+ IRTV+SFT
Sbjct: 185 AKGWLLTLVMLTSIPFLAMAGAAMALLVTRASSRGQAAYAKAATVVEQTIGSIRTVASFT 244
Query: 252 GEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNG 311
GEKQAI Y + AY++++QQG +G+GLGV++ +Y LA+W+G K+I+EKGY G
Sbjct: 245 GEKQAINSYKKYITSAYKSSIQQGFSTGLGLGVMIYVFFSSYALAIWFGGKMILEKGYTG 304
Query: 312 GTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKI 371
G+VINVI+ ++ G MSLGQTSPC+ AFA GQAAAYKMFETIKRKP ID YD +G L I
Sbjct: 305 GSVINVIIIVVAGSMSLGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLGDI 364
Query: 372 EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA 431
G+IEL+DV+F YPARP+ +IF GFSL +PSG TAALVG+SGSGKSTVI+L+ERFYDP A
Sbjct: 365 RGDIELKDVHFSYPARPDEEIFDGFSLFIPSGATAALVGESGSGKSTVINLIERFYDPKA 424
Query: 432 GEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELAN 491
GEVLIDGI++K+ QLKWIR KIGLV QEP+LF++S+ ENIAYGKENAT QEI+ A ELAN
Sbjct: 425 GEVLIDGINLKEFQLKWIRSKIGLVCQEPVLFSSSIMENIAYGKENATLQEIKVATELAN 484
Query: 492 AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI 551
AAKFI+ LP+GLDT GEHGTQLSGGQKQRIAIARAILK+P++LLLDEATSALD ESER+
Sbjct: 485 AAKFINNLPQGLDTKVGEHGTQLSGGQKQRIAIARAILKDPRVLLLDEATSALDTESERV 544
Query: 552 VQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVR 611
VQ+AL ++M +RTTVVVAHRL+T+RNAD+IAV+H GK+VEKG+H EL+KD G Y+QL+R
Sbjct: 545 VQEALDRVMVNRTTVVVAHRLSTVRNADMIAVIHSGKMVEKGSHSELLKDSVGAYSQLIR 604
Query: 612 LQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYG 671
QE +K DA +D SSF + ++R GS + S + SRH +
Sbjct: 605 CQEINK-GHDAKPSDMAS-GSSFRNSNLNISREGS---VISGGTSSFGNSSRHH---SLN 656
Query: 672 VPGPINVFETEEGDQ--GGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHG 729
V G + G Q G E E +K+S+ R+A LNKPE PVLL+G++ A I+G
Sbjct: 657 VLGLFAGLDLGSGSQRVGQEETGTTSQEPLRKVSLTRIAALNKPEIPVLLLGTVVAAING 716
Query: 730 VIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKL 789
IFP+FG+L+S I FF+P D+L+KDSRFWA+I++ LG+ +LI P Q Y F VAGGKL
Sbjct: 717 AIFPLFGILISRVIEAFFKPADQLKKDSRFWAIIFVALGVTSLIVSPSQMYLFAVAGGKL 776
Query: 790 IRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIA 849
IRRI+S+ FEK VH E+SWFD+P NSSG++GARLSTDA+ IR+LVGD+L+L VQN A+ A
Sbjct: 777 IRRIQSMCFEKAVHMEVSWFDEPENSSGTMGARLSTDAALIRALVGDALSLAVQNAASAA 836
Query: 850 AGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSI 909
+GLIIAFTA+W LA +IL + PL+ + G+ Q KFMKGFSADAK YEEASQVANDAVGSI
Sbjct: 837 SGLIIAFTASWELALIILVMLPLIGINGFLQVKFMKGFSADAKSKYEEASQVANDAVGSI 896
Query: 910 RTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLV 969
RTVASFC+EEKVM +Y K+CEGP+K+GV++G +SG GFGFSF +L+C A FY + LV
Sbjct: 897 RTVASFCAEEKVMQMYNKQCEGPIKDGVKQGFISGLGFGFSFFILFCVYATSFYAAARLV 956
Query: 970 EHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDE 1029
E GK TF VF+VFFALT++A+G+SQ+S APD++KAK +AASIF I+D K KIDSS +
Sbjct: 957 EDGKTTFIDVFQVFFALTMAAIGISQSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDET 1016
Query: 1030 GMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIE 1089
G L +V G IELR +SF YP RP +QIFR+LCL+I +GKTVALVGESGSGKSTVI+L++
Sbjct: 1017 GTVLENVKGDIELRHLSFTYPARPGIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQ 1076
Query: 1090 RFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGK--QGGATEE 1147
RFYDPDSG + LD +EL K +L WLRQQMGLV QEPVLFN+TIR NIAYGK + ATE
Sbjct: 1077 RFYDPDSGQITLDGVELKKLQLKWLRQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATES 1136
Query: 1148 EIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEAT 1207
EIIAA E +NAH FIS++ GY+T VGE+G+QLSGGQKQR+AIARA++K PKILLLDEAT
Sbjct: 1137 EIIAAAELANAHKFISSIQQGYDTVVGEKGIQLSGGQKQRVAIARAIVKEPKILLLDEAT 1196
Query: 1208 SALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKI 1267
SALDAESER+VQDAL+RV+VNRTTVVVAHRL+TIKNAD+IA+VKNGVIAE G+H+ L+KI
Sbjct: 1197 SALDAESERLVQDALDRVIVNRTTVVVAHRLSTIKNADVIAIVKNGVIAENGTHETLIKI 1256
Query: 1268 TDGAYASLVALHVSSS 1283
G YASLV LH+++S
Sbjct: 1257 DGGVYASLVQLHMTAS 1272
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SYI3|AB5B_ARATH ABC transporter B family member 5 OS=Arabidopsis thaliana GN=ABCB5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1592 bits (4121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 769/1254 (61%), Positives = 979/1254 (78%), Gaps = 35/1254 (2%)
Query: 32 DNQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFG-SSDRSHVV 90
+ + VPFYKLF F+D D +LMIVG+I AI +G+ P MTL+FG LI++ G + + +V
Sbjct: 9 NTKTVPFYKLFFFSDSTDVLLMIVGSIGAIANGVCSPLMTLLFGELIDAMGPNQNNEEIV 68
Query: 91 HEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETT 150
VSKV + +YL G AAFLQV+CWM+TGERQA RIR LYLKTILRQDIGFFD E T
Sbjct: 69 ERVSKVCLSLVYLGLGALGAAFLQVACWMITGERQAARIRSLYLKTILRQDIGFFDVEMT 128
Query: 151 TGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVI 210
TGEV+GRMSGDT+LI +AMGEKVGKFIQL+STF GGFV+A RGW L LV+L +P + +
Sbjct: 129 TGEVVGRMSGDTVLILDAMGEKVGKFIQLISTFVGGFVIAFLRGWLLTLVMLTSIPLLAM 188
Query: 211 AGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRA 270
+G ++A+I+++ SS+ Q AY++A VVEQT+ IRTV+SFTGEKQA+ Y + +AY++
Sbjct: 189 SGAAIAIIVTRASSQEQAAYAKASNVVEQTLGSIRTVASFTGEKQAMSSYKELINLAYKS 248
Query: 271 AVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQ 330
V+QG V+G+GLGV+ L TY L W+G ++I+ KGY GG VINV++ +++ ++LGQ
Sbjct: 249 NVKQGFVTGLGLGVMFLVFFSTYALGTWFGGEMILRKGYTGGAVINVMVTVVSSSIALGQ 308
Query: 331 TSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEV 390
SPCL AF G+AAAYKMFETI+R+P ID +D +G LE I GEIELRDV F YPARP+
Sbjct: 309 ASPCLTAFTAGKAAAYKMFETIEREPLIDTFDLNGKVLEDIRGEIELRDVCFSYPARPKE 368
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIR 450
++F GFSL +PSGTT ALVG+SGSGKSTVISL+ERFYDP++G+VLIDG+D+K+ QLKWIR
Sbjct: 369 EVFGGFSLLIPSGTTTALVGESGSGKSTVISLIERFYDPNSGQVLIDGVDLKEFQLKWIR 428
Query: 451 EKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEH 510
KIGLVSQEP+LF++S+ ENI YGKE AT +EI+ A +LANAAKFIDKLP GL+T+ GEH
Sbjct: 429 GKIGLVSQEPVLFSSSIMENIGYGKEGATVEEIQAASKLANAAKFIDKLPLGLETLVGEH 488
Query: 511 GTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAH 570
GTQLSGGQKQRIAIARAILK+P+ILLLDEATSALDAESER+VQ+AL +IM +RTTV+VAH
Sbjct: 489 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVIVAH 548
Query: 571 RLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKL 630
RL+T+RNAD+IAV+H+GKIVE+G+H EL+KD EG Y+QL+RLQE +KE++
Sbjct: 549 RLSTVRNADIIAVIHRGKIVEEGSHSELLKDHEGAYSQLLRLQEINKESKRL-------- 600
Query: 631 DSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQGGAE 690
+ S S G S + +R S G G +
Sbjct: 601 --------EISDGSISSGSSRGNNSTRQDDDSFSVLGLL-----------------AGQD 635
Query: 691 RTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPE 750
T + E QK+S R+A LNKPE P+L++G++ ++G IFPIFG+L + I FF+
Sbjct: 636 STKMSQELSQKVSFTRIAALNKPEIPILILGTLVGAVNGTIFPIFGILFAKVIEAFFKAP 695
Query: 751 DKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFD 810
+L++DSRFW++I+++LG+ +I P NY F +AGG+LIRRIRS+ FEKVVH E+ WFD
Sbjct: 696 HELKRDSRFWSMIFVLLGVAAVIVYPTTNYLFAIAGGRLIRRIRSMCFEKVVHMEVGWFD 755
Query: 811 DPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVS 870
+P NSSG++GARLS DA+ IR+LVGDSL L V+N+A++ GLIIAFTA+W +A +IL +
Sbjct: 756 EPGNSSGAMGARLSADAALIRTLVGDSLCLSVKNVASLVTGLIIAFTASWEVAIIILVII 815
Query: 871 PLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCE 930
P + + GY Q KFMKGFSADAK YEEASQVANDAVGSIRTVASFC+EEKVM++Y+K+CE
Sbjct: 816 PFIGINGYIQIKFMKGFSADAKAKYEEASQVANDAVGSIRTVASFCAEEKVMEMYKKRCE 875
Query: 931 GPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISA 990
+K+G+++G++SG GFG SF VLY A CFY+G+ LV+ G+ F VF+VF ALT++A
Sbjct: 876 DTIKSGIKQGLISGVGFGISFFVLYSVYASCFYVGARLVKAGRTNFNDVFQVFLALTLTA 935
Query: 991 LGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYP 1050
+G+SQ S+ APD++K K +A SIF I+D KIDS + GM L +V G IEL +SF Y
Sbjct: 936 VGISQASSFAPDSSKGKGAAVSIFRIIDRISKIDSRDESGMVLENVKGDIELCHISFTYQ 995
Query: 1051 TRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK 1110
TRPDVQ+FR+LCLSI +G+TVALVGESGSGKSTVI+L++RFYDPDSGH+ LD +EL K +
Sbjct: 996 TRPDVQVFRDLCLSIRAGQTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKLR 1055
Query: 1111 LSWLRQQMGLVSQEPVLFNETIRTNIAYGKQG-GATEEEIIAATEASNAHNFISALPHGY 1169
L WLRQQMGLV QEPVLFN+TIR NIAYGK G ATE EIIAA+E +NAH FIS++ GY
Sbjct: 1056 LKWLRQQMGLVGQEPVLFNDTIRANIAYGKGGEEATEAEIIAASELANAHRFISSIQKGY 1115
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR 1229
+T VGERG+QLSGGQKQR+AIARA++K PKILLLDEATSALDAESERVVQDAL+RVMVNR
Sbjct: 1116 DTVVGERGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESERVVQDALDRVMVNR 1175
Query: 1230 TTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVSSS 1283
TT+VVAHRL+TIKNAD+IAVVKNGVIAE+G+H+ L+ I G YASLV LH+++S
Sbjct: 1176 TTIVVAHRLSTIKNADVIAVVKNGVIAEKGTHETLINIEGGVYASLVQLHINAS 1229
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SYI2|AB3B_ARATH ABC transporter B family member 3 OS=Arabidopsis thaliana GN=ABCB3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1561 bits (4041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 776/1253 (61%), Positives = 989/1253 (78%), Gaps = 31/1253 (2%)
Query: 33 NQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSH-VVH 91
+ VPFYKLF+F+D D +LMIVG+I AIG+G+ P MTL+FG LI+S G + + +V
Sbjct: 5 TKTVPFYKLFSFSDSTDVLLMIVGSIGAIGNGVGFPLMTLLFGDLIDSIGQNQSNKDIVE 64
Query: 92 EVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTT 151
VSKV +KF+YL GT AAFLQV+CWM+TGERQA RIR LYLKTILRQDIGFFD ET+T
Sbjct: 65 IVSKVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSLYLKTILRQDIGFFDVETST 124
Query: 152 GEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIA 211
GEV+GRMSGDT+LI EAMGEKVGKFIQL++TF GGFV+A +GW L LV+L +P + IA
Sbjct: 125 GEVVGRMSGDTVLILEAMGEKVGKFIQLIATFVGGFVLAFVKGWLLTLVMLVSIPLLAIA 184
Query: 212 GGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAA 271
G +M +I+++ SSR Q AY++A TVVEQT+ IRTV+SFTGEKQA++ Y + +AYRA+
Sbjct: 185 GAAMPIIVTRASSREQAAYAKASTVVEQTLGSIRTVASFTGEKQAMKSYREFINLAYRAS 244
Query: 272 VQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQT 331
V+QG G+GLGV+ +Y LA+W+G ++I++KGY GG V+NV++ ++ MSLGQT
Sbjct: 245 VKQGFSMGLGLGVVFFVFFCSYALAIWFGGEMILKKGYTGGEVVNVMVTVVASSMSLGQT 304
Query: 332 SPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQ 391
+PCL AFA G+AAAYKMFETI+RKP ID +D +G LE I GEIELRDV F YPARP +
Sbjct: 305 TPCLTAFAAGKAAAYKMFETIERKPSIDAFDLNGKVLEDIRGEIELRDVCFSYPARPMEE 364
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
+F GFSL +PSG TAALVG+SGSGKS+VISL+ERFYDP +G VLIDG+++K+ QLKWIR
Sbjct: 365 VFGGFSLLIPSGATAALVGESGSGKSSVISLIERFYDPSSGSVLIDGVNLKEFQLKWIRG 424
Query: 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHG 511
KIGLVSQEP+LF++S+ ENI YGKENAT +EI+ A +LANAA FIDKLP+GL+T+ GEHG
Sbjct: 425 KIGLVSQEPVLFSSSIMENIGYGKENATVEEIQAAAKLANAANFIDKLPRGLETLVGEHG 484
Query: 512 TQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHR 571
TQLSGGQKQRIAIARAILK+P+ILLLDEATSALDAESER+VQ+AL ++M SRTTV+VAHR
Sbjct: 485 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMMSRTTVIVAHR 544
Query: 572 LTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLD 631
L+T+RNAD+IAV+H+GKIVE+G+H EL+KD EG Y QL+RLQ+ KE + +L+
Sbjct: 545 LSTVRNADMIAVIHRGKIVEEGSHSELLKDHEGAYAQLIRLQKIKKEPK--------RLE 596
Query: 632 SSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQGGAER 691
SS ++ D+++ R SR R H S G G E
Sbjct: 597 SSNELRDRSINRGSSRNIRTR----VHDDDSVSVLGLL-----------------GRQEN 635
Query: 692 TPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPED 751
T + E+ + +S+ R+A LNKPE +L++G++ ++G IFPIFG+L + I FF+P
Sbjct: 636 TEISREQSRNVSITRIAALNKPETTILILGTLLGAVNGTIFPIFGILFAKVIEAFFKPPH 695
Query: 752 KLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDD 811
+++DSRFW++I+++LG+ +LI P Y F VAGG+LI+RIR + FEKVVH E+ WFDD
Sbjct: 696 DMKRDSRFWSMIFVLLGVASLIVYPMHTYLFAVAGGRLIQRIRVMCFEKVVHMEVGWFDD 755
Query: 812 PANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSP 871
P NSSG++G+RLS DA+ I++LVGDSL+L V+N A +GLIIAFTA+W LA +IL + P
Sbjct: 756 PENSSGTIGSRLSADAALIKTLVGDSLSLSVKNAAAAVSGLIIAFTASWKLAVIILVMIP 815
Query: 872 LMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEG 931
L+ + GY Q KF+KGF+ADAK YEEASQVANDAVGSIRTVASFC+EEKVM++Y+K+CE
Sbjct: 816 LIGINGYLQIKFIKGFTADAKAKYEEASQVANDAVGSIRTVASFCAEEKVMEMYKKRCED 875
Query: 932 PLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISAL 991
+K+G+++G++SG GFG SF VLY A CFY+G+ LV+ G+ F VF+VF ALT++A+
Sbjct: 876 TIKSGIKQGLISGVGFGISFFVLYSVYASCFYVGARLVKAGRTNFNDVFQVFLALTMTAI 935
Query: 992 GVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPT 1051
G+SQ S+ APD++KAK +AASIF I+D K IDS + G+ L +V G IEL +SF Y T
Sbjct: 936 GISQASSFAPDSSKAKGAAASIFGIIDGKSMIDSRDESGLVLENVKGDIELCHISFTYQT 995
Query: 1052 RPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKL 1111
RPDVQIFR+LC +I +G+TVALVGESGSGKSTVI+L++RFYDPDSGH+ LD +EL K +L
Sbjct: 996 RPDVQIFRDLCFAIRAGQTVALVGESGSGKSTVISLLQRFYDPDSGHITLDRVELKKLQL 1055
Query: 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQGG-ATEEEIIAATEASNAHNFISALPHGYE 1170
W+RQQMGLV QEPVLFN+TIR+NIAYGK G A+E EIIAA E +NAH FIS++ GY+
Sbjct: 1056 KWVRQQMGLVGQEPVLFNDTIRSNIAYGKGGDEASEAEIIAAAELANAHGFISSIQQGYD 1115
Query: 1171 TNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRT 1230
T VGERG+QLSGGQKQR+AIARA++K PKILLLDEATSALDAESERVVQDAL+RVMVNRT
Sbjct: 1116 TVVGERGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRT 1175
Query: 1231 TVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVSSS 1283
TVVVAHRL+TIKNAD+IAVVKNGVI E+G+H+ L+ I G YASLV LH+S+S
Sbjct: 1176 TVVVAHRLSTIKNADVIAVVKNGVIVEKGTHETLINIEGGVYASLVQLHISAS 1228
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1093 bits (2827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/1255 (45%), Positives = 811/1255 (64%), Gaps = 37/1255 (2%)
Query: 34 QKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSS--DRSHVVH 91
Q +PF+KLF+FADK D +LM VG++ AI G + P L+FG ++N FG + D +VH
Sbjct: 22 QSLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDLHQMVH 81
Query: 92 EVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTT 151
EVS+ ++ F+YL +++ +++CWM +GERQ +R YL+ +L+QD+GFFDT+ T
Sbjct: 82 EVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVLKQDVGFFDTDART 141
Query: 152 GEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIA 211
G+++ +S DT+L+Q+A+ EKVG FI +STF G VV W LAL+ +A +P I A
Sbjct: 142 GDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIPGIAFA 201
Query: 212 GGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAA 271
GG A ++ ++S+ + +Y+ AG + EQ ++ +RTV S+ GE +A+ Y++ +Q +
Sbjct: 202 GGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAYSDAIQYTLKLG 261
Query: 272 VQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQT 331
+ GM G+GLG ++ L WY I +GG I + + GGMSLGQ+
Sbjct: 262 YKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQS 321
Query: 332 SPCLNAFAGGQAAAYKMFETIKRKPKI--DPYDTSGITLEKIEGEIELRDVYFRYPARPE 389
L AF+ G+AA YK+ E I ++P I DP D G L+++ G IE +DV F YP+RP+
Sbjct: 322 FSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLD--GKCLDQVHGNIEFKDVTFSYPSRPD 379
Query: 390 VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWI 449
V IF F++ PSG T A+VG SGSGKSTV+SL+ERFYDP++G++L+DG++IK LQLK++
Sbjct: 380 VMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQLKFL 439
Query: 450 REKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGE 509
RE+IGLV+QEP LFAT++ ENI YGK +AT E+ A ANA FI LPKG DT GE
Sbjct: 440 REQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGE 499
Query: 510 HGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVA 569
G QLSGGQKQRIAIARA+LK+PKILLLDEATSALDA SE IVQ+AL ++M RTTVVVA
Sbjct: 500 RGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVA 559
Query: 570 HRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQE--GSKEAEDALATDA 627
HRL TIRN D IAV+ QG++VE GTH+ELI G Y L+R QE G+++
Sbjct: 560 HRLCTIRNVDSIAVIQQGQVVETGTHEELIAK-SGAYASLIRFQEMVGTRD--------- 609
Query: 628 DKLDSSFDILDKAMTRSGSRGESMR-RSISRHSSGSRH-SFGFTYGVPGPINVFETEEGD 685
F TRS S+ +S+S S R+ S+ ++ G G I + E D
Sbjct: 610 ------FSNPSTRRTRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAETD 663
Query: 686 QGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRM 745
+ R P + RL LN PE+P ++G++ + + G I P F +++S+ I +
Sbjct: 664 R--KTRAP-------ENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEV 714
Query: 746 FFEPE-DKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQ 804
F+ + D + + ++ + IY+ G+ + A Q+YFF + G L R+R + ++
Sbjct: 715 FYYTDYDSMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRN 774
Query: 805 EISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAF 864
E+ WFD+ ++S + ARL+TDA+ ++S + + +++++QN+ ++ I+AF W ++
Sbjct: 775 EVGWFDEDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSL 834
Query: 865 VILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDL 924
+IL PL+++ + Q +KGF+ D + + S +A + V +IRTVA+F ++ K++ L
Sbjct: 835 LILGTFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSL 894
Query: 925 YEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFF 984
+ + P K + R SG FG S L LY + A + G+ LV G +TF +V KVF
Sbjct: 895 FCHELRVPQKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFV 954
Query: 985 ALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRC 1044
L I+A V++T ++AP+ + ++ S+F +LD + +ID + + ++ G IE R
Sbjct: 955 VLVITANSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRGDIEFRH 1014
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI 1104
V F YP+RPDV +FR+ L I +G + ALVG SGSGKS+VIA+IERFYDP +G V++D
Sbjct: 1015 VDFAYPSRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGK 1074
Query: 1105 ELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISA 1164
++ + L LR ++GLV QEP LF TI NIAYGK GATE E+I A A+NAH FIS
Sbjct: 1075 DIRRLNLKSLRLKIGLVQQEPALFAATIFDNIAYGKD-GATESEVIDAARAANAHGFISG 1133
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224
LP GY+T VGERGVQLSGGQKQRIAIARAVLKNP +LLLDEATSALDAESE V+Q+ALER
Sbjct: 1134 LPEGYKTPVGERGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALER 1193
Query: 1225 VMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALH 1279
+M RTTVVVAHRL+TI+ D I V+++G I EQGSH L+ +GAY+ L+ L
Sbjct: 1194 LMRGRTTVVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPEGAYSRLLQLQ 1248
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPK2|AB2B_ARATH ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1063 bits (2750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/1276 (43%), Positives = 813/1276 (63%), Gaps = 46/1276 (3%)
Query: 9 TQLKGIKRGDNNNNINNNKNDGNDNQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHP 68
T LK +K+ + + K KV KLF+FAD D VLM +G++ A G + P
Sbjct: 34 THLK-LKKMQPSGDPAPEKEKEMTQPKVSLLKLFSFADFYDCVLMTLGSVGACIHGASVP 92
Query: 69 FMTLIFGHLINSFGSSD--RSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQA 126
+ FG LIN G + H V+K ++ F+YL+ +++L+V+CWM TGERQA
Sbjct: 93 IFFIFFGKLINIIGLAYLFPKQASHRVAKYSLDFVYLSVAILFSSWLEVACWMHTGERQA 152
Query: 127 TRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGG 186
++R YL+++L QDI FDTE +TGEVI ++ D +++Q+A+ EKVG F+ +S F G
Sbjct: 153 AKMRRAYLRSMLSQDISLFDTEASTGEVISAITSDILVVQDALSEKVGNFLHYISRFIAG 212
Query: 187 FVVALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRT 246
F + W ++LV L+ +P I +AGG A + + +R + +Y +AG + E+ + +RT
Sbjct: 213 FAIGFTSVWQISLVTLSIVPLIALAGGIYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRT 272
Query: 247 VSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIE 306
V +FTGE++A+ Y L+ Y+ + G+ G+GLG + + ++ L VW+ S ++ +
Sbjct: 273 VQAFTGEERAVRLYREALENTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHK 332
Query: 307 KGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGI 366
+GG ++ ++ G+SLGQ +P ++AF +AAAY +F+ I+R SG
Sbjct: 333 DIADGGKSFTTMLNVVIAGLSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKTSAKSGR 392
Query: 367 TLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERF 426
L K++G I+ +D F YP+RP+V IF +L +P+G ALVG SGSGKSTVISL+ERF
Sbjct: 393 KLGKVDGHIQFKDATFSYPSRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERF 452
Query: 427 YDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTA 486
Y+P +G VL+DG +I +L +KW+R +IGLV+QEP LFAT++RENI YGK++AT +EI A
Sbjct: 453 YEPISGAVLLDGNNISELDIKWLRGQIGLVNQEPALFATTIRENILYGKDDATAEEITRA 512
Query: 487 IELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 546
+L+ A FI+ LP+G +T GE G QLSGGQKQRIAI+RAI+KNP ILLLDEATSALDA
Sbjct: 513 AKLSEAISFINNLPEGFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 572
Query: 547 ESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPY 606
ESE+ VQ+AL ++M RTTVVVAHRL+T+RNAD+IAVVH+GKIVE G H+ LI +P+G Y
Sbjct: 573 ESEKSVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAY 632
Query: 607 TQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSF 666
+ L+RLQE T S R S+ R++SR HS
Sbjct: 633 SSLLRLQE---------------------------TASLQRNPSLNRTLSRP-----HSI 660
Query: 667 GFTYGVPGPINVFETEEGD---QGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSI 723
++ + + F +E GA+ + K+ K+++ RL + +P++ + G+I
Sbjct: 661 KYSRELSRTRSSFCSERESVTRPDGADPS-----KKVKVTVGRLYSMIRPDWMYGVCGTI 715
Query: 724 AAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFG 783
A I G P+F L +S ++ ++ D+ +K+ + A+++ +I LI ++ FG
Sbjct: 716 CAFIAGSQMPLFALGVSQALVSYYSGWDETQKEIKKIAILFCCASVITLIVYTIEHICFG 775
Query: 784 VAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQ 843
G +L R+R F ++ EI WFD+ N+S + +RL +DA+ ++++V D +++Q
Sbjct: 776 TMGERLTLRVRENMFRAILKNEIGWFDEVDNTSSMLASRLESDATLLKTIVVDRSTILLQ 835
Query: 844 NIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVAN 903
N+ + IIAF NW L V+LA PL++ ++ FM+G+ D Y +A+ +A
Sbjct: 836 NLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHISEKLFMQGYGGDLNKAYLKANMLAG 895
Query: 904 DAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFY 963
++V +IRTVA+FC+EEK+++LY ++ P K+ RRG ++G +G S ++ + +
Sbjct: 896 ESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRRGQIAGLFYGVSQFFIFSSYGLALW 955
Query: 964 IGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKI 1023
GS L++ G A F V K F L ++AL + +T A+APD K AS+FEILD K +I
Sbjct: 956 YGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLALAPDLLKGNQMVASVFEILDRKTQI 1015
Query: 1024 DSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKST 1083
E L++V G IEL+ V F YP+RPDV IFR+ L + +GK++ALVG+SGSGKS+
Sbjct: 1016 VGETSE--ELNNVEGTIELKGVHFSYPSRPDVVIFRDFDLIVRAGKSMALVGQSGSGKSS 1073
Query: 1084 VIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGG 1143
VI+LI RFYDP +G V+++ ++ K L LR+ +GLV QEP LF TI NI YG + G
Sbjct: 1074 VISLILRFYDPTAGKVMIEGKDIKKLDLKALRKHIGLVQQEPALFATTIYENILYGNE-G 1132
Query: 1144 ATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLL 1203
A++ E++ + +NAH+FI++LP GY T VGERGVQ+SGGQ+QRIAIARA+LKNP ILLL
Sbjct: 1133 ASQSEVVESAMLANAHSFITSLPEGYSTKVGERGVQMSGGQRQRIAIARAILKNPAILLL 1192
Query: 1204 DEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDA 1263
DEATSALD ESERVVQ AL+R+M NRTTVVVAHRL+TIKNAD I+V+ G I EQGSH
Sbjct: 1193 DEATSALDVESERVVQQALDRLMANRTTVVVAHRLSTIKNADTISVLHGGKIVEQGSHRK 1252
Query: 1264 LMKITDGAYASLVALH 1279
L+ G Y L++L
Sbjct: 1253 LVLNKSGPYFKLISLQ 1268
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1283 | ||||||
| 225463358 | 1270 | PREDICTED: ABC transporter B family memb | 0.974 | 0.984 | 0.775 | 0.0 | |
| 255557453 | 1249 | multidrug resistance protein 1, 2, putat | 0.968 | 0.994 | 0.751 | 0.0 | |
| 449433547 | 1270 | PREDICTED: ABC transporter B family memb | 0.975 | 0.985 | 0.764 | 0.0 | |
| 224116786 | 1255 | multidrug/pheromone exporter, MDR family | 0.970 | 0.992 | 0.745 | 0.0 | |
| 449479200 | 1268 | PREDICTED: LOW QUALITY PROTEIN: ABC tran | 0.973 | 0.985 | 0.763 | 0.0 | |
| 147796332 | 2006 | hypothetical protein VITISV_009891 [Viti | 0.949 | 0.607 | 0.766 | 0.0 | |
| 356546526 | 1261 | PREDICTED: ABC transporter B family memb | 0.968 | 0.984 | 0.732 | 0.0 | |
| 110226562 | 1266 | MDR-like ABC transporter [Catharanthus r | 0.977 | 0.990 | 0.731 | 0.0 | |
| 255557457 | 1269 | multidrug resistance protein 1, 2, putat | 0.984 | 0.995 | 0.715 | 0.0 | |
| 357447131 | 1262 | ABC transporter B family member [Medicag | 0.977 | 0.993 | 0.719 | 0.0 |
| >gi|225463358|ref|XP_002271185.1| PREDICTED: ABC transporter B family member 9-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1987 bits (5148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 971/1252 (77%), Positives = 1120/1252 (89%), Gaps = 2/1252 (0%)
Query: 32 DNQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVH 91
D +KVPFYKLF+FADK D LMIVGT+ A+ +G+ P MTLIFG LIN+FG SD SHVVH
Sbjct: 19 DEEKVPFYKLFSFADKLDVGLMIVGTVCAMANGMTQPLMTLIFGQLINTFGDSDPSHVVH 78
Query: 92 EVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTT 151
EVS+V++KF+YLA G+GIA+ LQVS WMVTGERQATRIRGLYLKTILRQDI FFDTETTT
Sbjct: 79 EVSRVSLKFVYLAIGSGIASLLQVSSWMVTGERQATRIRGLYLKTILRQDIAFFDTETTT 138
Query: 152 GEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIA 211
GEVIGRMSGDTILIQ+AMGEKVGKFIQLMSTF GGF++A ARGW L+LVLL +P +VI+
Sbjct: 139 GEVIGRMSGDTILIQDAMGEKVGKFIQLMSTFLGGFIIAFARGWLLSLVLLPSIPLLVIS 198
Query: 212 GGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAA 271
GG+MA+IMS+MSSRGQ+AY+EAG VVEQTV IRTV+SFTGEK+AI+ Y+NKL +AY +
Sbjct: 199 GGTMAIIMSRMSSRGQLAYAEAGNVVEQTVGAIRTVASFTGEKKAIKNYDNKLHIAYAST 258
Query: 272 VQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQT 331
VQQG+ SGIGLG ++L + GTYGLA+WYGSKL+IE+GY+GG VIN IMAIM+GGMSLGQT
Sbjct: 259 VQQGLASGIGLGTVLLIIFGTYGLAMWYGSKLVIERGYDGGRVINCIMAIMSGGMSLGQT 318
Query: 332 SPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQ 391
SPCLNAFA GQAAAYKMFETIKRKP+ID YDTSG LE I GEIEL+DVYF YPARP+VQ
Sbjct: 319 SPCLNAFAAGQAAAYKMFETIKRKPQIDAYDTSGTVLEDIRGEIELKDVYFNYPARPDVQ 378
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
IF+G SLHVPSG TAALVGQSGSGKSTVISL+ERFYDP +GEVLIDG+D+K+LQLKWIRE
Sbjct: 379 IFSGISLHVPSGKTAALVGQSGSGKSTVISLLERFYDPHSGEVLIDGVDLKQLQLKWIRE 438
Query: 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHG 511
KIGLVSQEPILFAT+++ENI+YGKE+A+D+EIRTAI LANAAKFIDKLPKGLDTM GEHG
Sbjct: 439 KIGLVSQEPILFATTIKENISYGKEDASDEEIRTAIVLANAAKFIDKLPKGLDTMVGEHG 498
Query: 512 TQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHR 571
TQLSGGQKQRIAIARAILKNP+ILLLDEATSALDAESERIVQDALV +M +RTTVVVAHR
Sbjct: 499 TQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQDALVNVMVNRTTVVVAHR 558
Query: 572 LTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLD 631
LTTIRNAD+IAVV+QGKIVE+GTH ELIKDP+G YTQLV LQEG+ +A+DA D DKLD
Sbjct: 559 LTTIRNADIIAVVYQGKIVEQGTHGELIKDPDGAYTQLVHLQEGNSQAKDAHMEDTDKLD 618
Query: 632 SSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQGGAER 691
S D +D ++ RSGS+ S+ RS+SR SS R S ++ VP PI + TE Q ER
Sbjct: 619 KSPDNMDNSIARSGSQRLSLWRSMSRGSSSGRSSVSLSFSVPFPIGIPATEMAGQ-DIER 677
Query: 692 TPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPED 751
EKR+K+S+RRLAYLNKPE PVLL+GSIAAGIHGVIFPIFGLLLS++I++FFEP +
Sbjct: 678 RDGEDEKRRKVSLRRLAYLNKPEVPVLLLGSIAAGIHGVIFPIFGLLLSTAIKIFFEPPN 737
Query: 752 KLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDD 811
+L+KDSRFWAL+++ LG++ L+ VP QNYFFGVAGGKLI+RIRSL+FEKVVHQEISWFDD
Sbjct: 738 ELKKDSRFWALMFVGLGVLTLMVVPVQNYFFGVAGGKLIQRIRSLSFEKVVHQEISWFDD 797
Query: 812 PANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSP 871
PANSSG+VGARLSTDAS++RSLVGD+LALVVQN+ T+ AGL+I+FTANWILA +ILAV P
Sbjct: 798 PANSSGAVGARLSTDASSVRSLVGDALALVVQNLTTVIAGLVISFTANWILALIILAVLP 857
Query: 872 LMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEG 931
L+ +QGY Q KF+KGFSADAK+MYEEASQVANDAVGSIRTVASFC+E+KVMD+Y++KC+
Sbjct: 858 LVFLQGYFQMKFVKGFSADAKVMYEEASQVANDAVGSIRTVASFCAEKKVMDMYQQKCDA 917
Query: 932 PLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISAL 991
P+K GVR G++SGAGFGFSF LYCTNAFCFYIG++LV+HGKATFG+VFKVFFALTISA+
Sbjct: 918 PMKQGVRLGLVSGAGFGFSFFALYCTNAFCFYIGAILVQHGKATFGEVFKVFFALTISAI 977
Query: 992 GVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPT 1051
G+SQTSAMAPDT KAKDS A+IF++LDSKP IDSS +EG TL++V G IE + VSFKY T
Sbjct: 978 GISQTSAMAPDTNKAKDSTATIFQLLDSKPTIDSSSNEGTTLANVKGDIEFQHVSFKYST 1037
Query: 1052 RPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKL 1111
RPDVQIFR+L LSIPSGKTVALVGESGSGKSTVI+LIERFY+P+SG +LLD +E+ K KL
Sbjct: 1038 RPDVQIFRDLSLSIPSGKTVALVGESGSGKSTVISLIERFYNPESGRILLDGMEIQKLKL 1097
Query: 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYET 1171
SWLRQQMGLV QEPVLFNETIR NIAYGK+ GATE+EIIAAT+A+NAHNFI +LP GYET
Sbjct: 1098 SWLRQQMGLVGQEPVLFNETIRANIAYGKE-GATEDEIIAATKAANAHNFIHSLPQGYET 1156
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTT 1231
+VGERGVQLSGGQKQRIAIARA+LK+PKILLLDEATSALDAESERVVQ+AL+RVMV RTT
Sbjct: 1157 SVGERGVQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQEALDRVMVERTT 1216
Query: 1232 VVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVSSS 1283
VVVAHRLTTIK ADIIAVVKNGVIAE+GSH+ LM ITDG YASLVALH +SS
Sbjct: 1217 VVVAHRLTTIKGADIIAVVKNGVIAEKGSHEELMSITDGPYASLVALHTTSS 1268
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557453|ref|XP_002519757.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223541174|gb|EEF42730.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1959 bits (5076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 942/1254 (75%), Positives = 1104/1254 (88%), Gaps = 12/1254 (0%)
Query: 33 NQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHE 92
NQKVP YKLFAFAD+ D VLMIVGT+SAIG+GLA P MTL+FG LINSFG++D S+VVHE
Sbjct: 5 NQKVPIYKLFAFADRLDMVLMIVGTVSAIGNGLAQPLMTLLFGQLINSFGTTDPSNVVHE 64
Query: 93 VSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTG 152
VSK+++K +YLA G+GIA+ LQV+CWMVTGERQ+ RIRGLYLKTILRQDIGFFDTETTTG
Sbjct: 65 VSKLSLKLVYLAIGSGIASLLQVACWMVTGERQSARIRGLYLKTILRQDIGFFDTETTTG 124
Query: 153 EVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAG 212
EVIGRMSGDT+LIQ+AMGEK GKFIQL STF GGF++A ARGW L+ VLL+C+P +VI G
Sbjct: 125 EVIGRMSGDTVLIQDAMGEKAGKFIQLASTFLGGFIIAFARGWLLSFVLLSCIPLLVIVG 184
Query: 213 GSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAV 272
G MA++MSKMSSRGQ+AY++AG VVEQTV IRTV+SFTGEK AI+KYN KL++AY++ V
Sbjct: 185 GFMAIVMSKMSSRGQVAYAKAGNVVEQTVGAIRTVASFTGEKHAIQKYNEKLKIAYQSTV 244
Query: 273 QQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTS 332
QQG+ SG+G+G ++L V TY LA+WYGSKLII KGYNGG VI VIM+IMTGGMSLGQTS
Sbjct: 245 QQGLASGVGIGSMLLVVFATYALAIWYGSKLIIHKGYNGGQVITVIMSIMTGGMSLGQTS 304
Query: 333 PCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQI 392
P LNAFA GQAAAYKMFETI R PKID YDT G+ LE I+G+IEL+DV+FRYPARP+V+I
Sbjct: 305 PSLNAFAAGQAAAYKMFETINRVPKIDAYDTDGMVLEDIKGDIELKDVHFRYPARPDVKI 364
Query: 393 FAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREK 452
FAGFSL +PSG TAALVGQSGSGKSTV+SL+ERFYDPD+GEVLIDG+++KKL+L IREK
Sbjct: 365 FAGFSLQIPSGKTAALVGQSGSGKSTVVSLIERFYDPDSGEVLIDGVNLKKLKLSRIREK 424
Query: 453 IGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGT 512
IGLVSQEPILFAT++++NIAYGKENATDQEIRTAIELANAAKFIDK+P+GLDTM GEHGT
Sbjct: 425 IGLVSQEPILFATTIKQNIAYGKENATDQEIRTAIELANAAKFIDKMPEGLDTMVGEHGT 484
Query: 513 QLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRL 572
QLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ+AL +M+SRTTVVVAHRL
Sbjct: 485 QLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQNALENVMSSRTTVVVAHRL 544
Query: 573 TTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDS 632
TTIRNAD+IAVVH GKIVEKGTH+ELI+ PEG Y+QLV LQ G+KE+E + + D DS
Sbjct: 545 TTIRNADIIAVVHLGKIVEKGTHEELIQYPEGAYSQLVHLQAGAKESESSQHMNEDD-DS 603
Query: 633 SFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFT---YGVPGPINVFETEEGDQGGA 689
+DK + RSGS S++ S+ R SS R SF + G+P IN ETEE D+
Sbjct: 604 G---MDKPILRSGSLRNSLQLSMERASSQHRQSFTVSNIGLGMPVDINFIETEEHDESSK 660
Query: 690 ERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEP 749
+ +K +++ MRRLAYLNKPE P+L++G+IAA IHG +FPIFGLLLS++I++F+EP
Sbjct: 661 GK-----DKHKEVPMRRLAYLNKPELPILILGAIAAAIHGTVFPIFGLLLSTAIKVFYEP 715
Query: 750 EDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWF 809
+L+KDS FWAL+Y+ +G IN + +P QNYFFG+AGG+LI RIR++TFE+VVHQEISWF
Sbjct: 716 PPQLKKDSEFWALVYIGIGFINFLVLPVQNYFFGIAGGRLIERIRTMTFERVVHQEISWF 775
Query: 810 DDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAV 869
DDPANSSG+VGARLSTDAST+RSLVGD+LAL+ QNIATI A LIIAFTANWILA VI+AV
Sbjct: 776 DDPANSSGAVGARLSTDASTVRSLVGDALALIFQNIATIVAALIIAFTANWILALVIVAV 835
Query: 870 SPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKC 929
SPL+L QG+ Q +F KGFSADAK+MYEEASQVANDAVGSIRT+ASFC+E+KVMDLY++KC
Sbjct: 836 SPLLLFQGFIQARFAKGFSADAKVMYEEASQVANDAVGSIRTIASFCAEKKVMDLYQQKC 895
Query: 930 EGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTIS 989
+GP+K GV+ G++SGAGFGFSF VLYCTNAFCFYIG++LV+HGKATF +VFKVFFALTI+
Sbjct: 896 DGPVKQGVQLGLVSGAGFGFSFFVLYCTNAFCFYIGALLVKHGKATFPEVFKVFFALTIA 955
Query: 990 ALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKY 1049
A+GVSQ+S +APD +KAKDS ASIF ILD KPKIDSS DEG TL++V G IEL VSFKY
Sbjct: 956 AVGVSQSSGLAPDKSKAKDSTASIFAILDRKPKIDSSSDEGTTLANVKGDIELEHVSFKY 1015
Query: 1050 PTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF 1109
P RP VQIFR+L LSIPSGKTVALVGESGSGKSTVI+L+ERFYDPDSG V LD +E+ KF
Sbjct: 1016 PMRPHVQIFRDLTLSIPSGKTVALVGESGSGKSTVISLVERFYDPDSGKVYLDGVEIKKF 1075
Query: 1110 KLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGY 1169
KLSWLRQQMGLV QEP+LFNETIR NIAYGKQG TE+EIIAAT+A+NAHNFIS+LP GY
Sbjct: 1076 KLSWLRQQMGLVGQEPILFNETIRDNIAYGKQGDVTEDEIIAATKAANAHNFISSLPQGY 1135
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR 1229
ET+VGERGVQLSGGQKQRIAIARA+LKNP+ILLLDEATSALDAESERVVQ+AL++VM+NR
Sbjct: 1136 ETSVGERGVQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALDKVMINR 1195
Query: 1230 TTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVSSS 1283
TTV+VAHRLTTIK ADIIAVVKNGVIAE+G HDALMKI +G YASLV+LH+S++
Sbjct: 1196 TTVIVAHRLTTIKCADIIAVVKNGVIAEKGRHDALMKIDNGTYASLVSLHMSAT 1249
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433547|ref|XP_004134559.1| PREDICTED: ABC transporter B family member 9-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1957 bits (5071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 961/1257 (76%), Positives = 1120/1257 (89%), Gaps = 6/1257 (0%)
Query: 28 NDGNDNQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRS 87
N+G +QKVPFYKLF FAD+ D +LM VG++ A+ +GL+ P MTLIFG +I+SFGSS++S
Sbjct: 17 NNGRSDQKVPFYKLFTFADRSDNILMAVGSVCAVANGLSQPIMTLIFGKMIDSFGSSNQS 76
Query: 88 HVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDT 147
+VV +VSK+++ F+YL GTGIA+FLQV+CWMVTGERQA RIR LYLKTILRQDI +FDT
Sbjct: 77 NVVTQVSKISIDFVYLGIGTGIASFLQVACWMVTGERQAARIRALYLKTILRQDITYFDT 136
Query: 148 ETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPA 207
ETTTGEVIGRMSGDTILIQ+AMGEKVGKFIQLMSTFFGGFVVA ARGW LA+VLL+C+PA
Sbjct: 137 ETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLMSTFFGGFVVAFARGWLLAVVLLSCIPA 196
Query: 208 IVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVA 267
+VIAGG+ +LIMSKMSSRGQIAY+EAG VVEQTV IRTV+SFTGEKQAIEKYN KL++A
Sbjct: 197 VVIAGGTTSLIMSKMSSRGQIAYAEAGNVVEQTVGAIRTVASFTGEKQAIEKYNEKLKIA 256
Query: 268 YRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMS 327
Y++ VQQG+ +G+GLG+++L GTYGLAVWYGSKLII+KGYNGG VINVI AIMTGGMS
Sbjct: 257 YKSTVQQGLAAGLGLGIILLIAFGTYGLAVWYGSKLIIQKGYNGGQVINVIFAIMTGGMS 316
Query: 328 LGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPAR 387
LGQTSP +NAFA GQAAAYKMFETIKRKPKID YD SGI E I+G+IEL+D+YFRYPAR
Sbjct: 317 LGQTSPVVNAFASGQAAAYKMFETIKRKPKIDSYDASGIAPEDIQGDIELKDIYFRYPAR 376
Query: 388 PEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLK 447
P+VQIF+GFSL VPSGTTAALVG SGSGKSTVISL+ERFYDPD+GEVLIDG+++K+ +L+
Sbjct: 377 PDVQIFSGFSLFVPSGTTAALVGHSGSGKSTVISLLERFYDPDSGEVLIDGVNLKQYKLR 436
Query: 448 WIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMA 507
WIREKIGLVSQEPILF T++RENI YGK+NAT++E+R AIELANAAKFIDKLPKGLDTM
Sbjct: 437 WIREKIGLVSQEPILFTTTIRENILYGKDNATEEEVRAAIELANAAKFIDKLPKGLDTMV 496
Query: 508 GEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVV 567
GEHGTQLSGGQKQRIAI+RAILKNP+ILLLDEATSALD+ESERIVQ+ALV++M +RTTVV
Sbjct: 497 GEHGTQLSGGQKQRIAISRAILKNPRILLLDEATSALDSESERIVQEALVRVMANRTTVV 556
Query: 568 VAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDA 627
VAHRLTTIRN+D IAVVHQGK++E+GTHDELIK+P+G Y+QLVRLQ + T+
Sbjct: 557 VAHRLTTIRNSDNIAVVHQGKLLEQGTHDELIKNPDGAYSQLVRLQ---EGTTTGTETET 613
Query: 628 DKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQG 687
+ ++ + D LDK M S S+ S+ RSISR SSGSR SF + +PG +++ + +E D
Sbjct: 614 NPINDAID-LDKTMGSSASKRTSVIRSISRTSSGSRRSFTINFAIPGSVHIHD-QEIDDD 671
Query: 688 GAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFF 747
G +R + +K +++SM+RLA LNKPE PVLL+G IAA ++G++FPIFGLLLSS+I MF+
Sbjct: 672 GPKRNDMDKKKPKQVSMKRLATLNKPEMPVLLLGCIAAVMNGMVFPIFGLLLSSAIGMFY 731
Query: 748 EPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEIS 807
+P +L K+S+FWALIYL LG + A+P QNYFFG+AGGKLI RIRSLTF+K+VHQ+IS
Sbjct: 732 KPASQLEKESKFWALIYLGLGCLTFFALPTQNYFFGIAGGKLIERIRSLTFKKIVHQQIS 791
Query: 808 WFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVIL 867
+FDDPAN+SG++GARLSTDA+T+R LVGD+LALVVQNIATI AGLIIAFTANWILA VI+
Sbjct: 792 YFDDPANASGAIGARLSTDAATVRGLVGDALALVVQNIATITAGLIIAFTANWILALVII 851
Query: 868 AVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEK 927
VSPL+LVQGY QTKF KGFSADAK+MYEEASQVANDAVGSIRTVASFCSE+KVMDLYEK
Sbjct: 852 GVSPLLLVQGYLQTKFTKGFSADAKIMYEEASQVANDAVGSIRTVASFCSEKKVMDLYEK 911
Query: 928 KCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALT 987
KCE P+KNGVR G++SGAGFGFSF L+CTNAFCFYIGS+LV HGKATF +VFKVFFALT
Sbjct: 912 KCEDPVKNGVRLGLVSGAGFGFSFFALFCTNAFCFYIGSILVNHGKATFPEVFKVFFALT 971
Query: 988 ISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSF 1047
ISA+GVSQTSA+APD++KAKDSAASIFEILDSKPKIDSS EG+TL+SV G IE VSF
Sbjct: 972 ISAMGVSQTSALAPDSSKAKDSAASIFEILDSKPKIDSSSSEGVTLTSVIGNIEFDHVSF 1031
Query: 1048 KYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELP 1107
KYPTRPD+QIFR+LCL IPSGKTVALVGESGSGKSTVI+LIERFYDPDSG LLD +E+
Sbjct: 1032 KYPTRPDIQIFRDLCLRIPSGKTVALVGESGSGKSTVISLIERFYDPDSGRTLLDGVEIH 1091
Query: 1108 KFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGK-QGGATEEEIIAATEASNAHNFISALP 1166
KFKLSWLRQQMGLVSQEP+LFNETIR+NIAYGK + A+EEEII A +A+NAHNFIS+LP
Sbjct: 1092 KFKLSWLRQQMGLVSQEPILFNETIRSNIAYGKPENAASEEEIIGAAKAANAHNFISSLP 1151
Query: 1167 HGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM 1226
GYET+VGERGVQLSGGQKQRIAIARA+LKNPKILLLDEATSALDAESERVVQDAL+RVM
Sbjct: 1152 EGYETSVGERGVQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERVVQDALDRVM 1211
Query: 1227 VNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVSSS 1283
VNRTTVVVAHRLTTI+ ADIIAVVKNGVIAE+GSH+ LMKI+DGAYASLVALH +SS
Sbjct: 1212 VNRTTVVVAHRLTTIRGADIIAVVKNGVIAEKGSHEELMKISDGAYASLVALHSTSS 1268
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116786|ref|XP_002331877.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222875395|gb|EEF12526.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1949 bits (5048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 948/1271 (74%), Positives = 1099/1271 (86%), Gaps = 26/1271 (2%)
Query: 17 GDNNNNINNNKNDGN-DNQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFG 75
G + N+I N + N ++QKV F+KLF FAD+ D VLMIVGT+SAI +GLA P MTLIFG
Sbjct: 7 GASTNSIANGQKTTNGEDQKVAFHKLFTFADRLDVVLMIVGTLSAIANGLAQPLMTLIFG 66
Query: 76 HLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLK 135
LINSFGSSDRS+VV EVSKVA+ F+YLA G+GIA+ LQVS WMVTGERQ+TRIR LYLK
Sbjct: 67 QLINSFGSSDRSNVVKEVSKVALNFVYLAIGSGIASLLQVSSWMVTGERQSTRIRSLYLK 126
Query: 136 TILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGW 195
TILRQDIGFFD+ET+TGEVIGRMSGDTILIQ+AMGEKVGKFIQL++TFFGGF + +GW
Sbjct: 127 TILRQDIGFFDSETSTGEVIGRMSGDTILIQDAMGEKVGKFIQLLATFFGGFAIGFIKGW 186
Query: 196 FLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQ 255
LALVLL+ +P +VIAGG MALIM+KMSSRGQ+AY+EAG +VEQTV IRTV+SFTGEK
Sbjct: 187 LLALVLLSSIPPLVIAGGVMALIMTKMSSRGQVAYAEAGNIVEQTVGAIRTVASFTGEKH 246
Query: 256 AIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVI 315
AIEKYN+KL++AY +A QQG+ SG+GLG ++ V GTY LA+WYGSKLI+EKGYNGG V+
Sbjct: 247 AIEKYNSKLKIAYNSAAQQGLASGLGLGTMLFIVFGTYALAIWYGSKLIVEKGYNGGQVM 306
Query: 316 NVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEI 375
VI++IMTGGMSLGQTSPCLNAFA GQAAAYKMFETI+RKPKIDPYDTSG+ +E ++GEI
Sbjct: 307 TVIISIMTGGMSLGQTSPCLNAFASGQAAAYKMFETIERKPKIDPYDTSGMVVEDLDGEI 366
Query: 376 ELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVL 435
ELRDVYFRYPARPEVQIF+GFSL VPSGTT ALVGQSGSGKSTVISLVERFYDPD+GEVL
Sbjct: 367 ELRDVYFRYPARPEVQIFSGFSLQVPSGTTTALVGQSGSGKSTVISLVERFYDPDSGEVL 426
Query: 436 IDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKF 495
IDG+D+KKL+L WIREKIGLVSQEPILFATS++ENIAYGKENATDQEIRTAI+LANAAKF
Sbjct: 427 IDGVDLKKLKLSWIREKIGLVSQEPILFATSIKENIAYGKENATDQEIRTAIQLANAAKF 486
Query: 496 IDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDA 555
IDK+P+GLDTM GEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDA
Sbjct: 487 IDKMPEGLDTMVGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDA 546
Query: 556 LVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEG 615
LVKIM +RTT+VVAHRLTTIRNAD+IAVVH GKIVEKG+H+EL KDPEG Y+QL+RLQ G
Sbjct: 547 LVKIMCNRTTLVVAHRLTTIRNADMIAVVHLGKIVEKGSHEELTKDPEGAYSQLIRLQGG 606
Query: 616 SKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFT---YGV 672
+ ++E++ DAD S+ S++ SISR SSGSR SF +G+
Sbjct: 607 AMDSEESQDIDADM----------------SQKHSVQGSISRGSSGSRRSFTLNTVGFGM 650
Query: 673 PGPINVFETEEGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIF 732
PGP +V + +E +Q K +++S++RLAYLNKPE PVL +G++AA IHGVIF
Sbjct: 651 PGPTSVHD-DEFEQNNERNV-----KPKEVSIKRLAYLNKPELPVLFLGTVAAVIHGVIF 704
Query: 733 PIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRR 792
P+FGLLLS +I MF+EP ++RKDS+FWA++YL LG I A+P Q Y FG+AGGKLI R
Sbjct: 705 PVFGLLLSKAINMFYEPPKEIRKDSKFWAVLYLGLGFITFAALPLQYYLFGIAGGKLIER 764
Query: 793 IRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGL 852
IRS TFEKVVHQEISWFDDP NSSG++GARLSTDAST+R LVGDSL+L+VQNI+TI + L
Sbjct: 765 IRSKTFEKVVHQEISWFDDPTNSSGAIGARLSTDASTVRRLVGDSLSLIVQNISTILSAL 824
Query: 853 IIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTV 912
+IAF+ANW+L +I+A+SPL+ +QGY Q KFMKGFSAD+K+MYE+ASQVANDAVGSIRTV
Sbjct: 825 VIAFSANWMLTLIIIAISPLLFIQGYMQAKFMKGFSADSKMMYEQASQVANDAVGSIRTV 884
Query: 913 ASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHG 972
ASFC+E+KVM+LY+KKCEGP K GVR G +SG G+G SF +LYCTNAFCFYIG++ V++G
Sbjct: 885 ASFCAEKKVMELYQKKCEGPTKQGVRLGFVSGIGYGLSFFILYCTNAFCFYIGAIFVQNG 944
Query: 973 KATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMT 1032
K TF VF+VFFALTI ALGVSQ+S +APDT KAKDSAASIF ILD KPKIDSS+DEG+T
Sbjct: 945 KTTFADVFRVFFALTIGALGVSQSSGLAPDTAKAKDSAASIFAILDRKPKIDSSRDEGLT 1004
Query: 1033 LSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFY 1092
L V G IE+ VSFKYP RP VQIFR++ LSIPSGKTVALVGESGSGKSTVI+LIERFY
Sbjct: 1005 LPHVNGDIEIEHVSFKYPMRPHVQIFRDMSLSIPSGKTVALVGESGSGKSTVISLIERFY 1064
Query: 1093 DPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAA 1152
DPDSGHV LD++E+ KFKL+WLRQQMGLVSQEP+LFNETIR NIAYGK G EEEII A
Sbjct: 1065 DPDSGHVYLDSVEIKKFKLNWLRQQMGLVSQEPILFNETIRANIAYGKHGEIAEEEIIEA 1124
Query: 1153 TEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
T ASNAHNFIS LP GY+T VGERG+QLSGGQKQRIAIARA+LKNPKILLLDEATSALDA
Sbjct: 1125 TRASNAHNFISTLPQGYDTKVGERGIQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 1184
Query: 1213 ESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAY 1272
ESER+VQ+AL+RVMVNRTTVVVAHRL TIK AD+IAVVKNG IAE+G HD LMKITDGAY
Sbjct: 1185 ESERIVQEALDRVMVNRTTVVVAHRLATIKGADVIAVVKNGAIAEKGKHDVLMKITDGAY 1244
Query: 1273 ASLVALHVSSS 1283
ASLVALH+S++
Sbjct: 1245 ASLVALHMSAT 1255
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449479200|ref|XP_004155533.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter B family member 9-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1946 bits (5042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 960/1257 (76%), Positives = 1114/1257 (88%), Gaps = 8/1257 (0%)
Query: 28 NDGNDNQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRS 87
N+G +QKVPFYKLF FAD+ D +LM VG++ A+ +GL+ P MTLIFG +I+SFGSS++S
Sbjct: 17 NNGRSDQKVPFYKLFTFADRSDNILMAVGSVCAVANGLSQPIMTLIFGKMIDSFGSSNQS 76
Query: 88 HVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDT 147
+VV +VSK+++ F+YL GTGIA+FLQV+CWMVTGERQA RIR LYLKTILRQDI +FDT
Sbjct: 77 NVVTQVSKISIDFVYLGIGTGIASFLQVACWMVTGERQAARIRALYLKTILRQDITYFDT 136
Query: 148 ETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPA 207
ETTTGEVIGRMSGDTILIQ+AMGEKVGKFIQLMSTFFGGFVVA ARGW LA+VLL+C+PA
Sbjct: 137 ETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLMSTFFGGFVVAFARGWLLAVVLLSCIPA 196
Query: 208 IVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVA 267
+VIAGG+ +LIMSKMSSRGQIAY+EAG VVEQTV IRTV+SFTGEKQAIEKYN KL++A
Sbjct: 197 VVIAGGTTSLIMSKMSSRGQIAYAEAGNVVEQTVGAIRTVASFTGEKQAIEKYNEKLKIA 256
Query: 268 YRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMS 327
Y++ VQQG+ +G+GLG+++L GTYGLAVWYGSKLII+KGYNGG VINVI AIMTGGMS
Sbjct: 257 YKSTVQQGLAAGLGLGIILLIAFGTYGLAVWYGSKLIIQKGYNGGQVINVIFAIMTGGMS 316
Query: 328 LGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPAR 387
LGQTSP +NAFA GQAAAYKMFETIKRKPKID YD SGI E I+G+IEL+D+YFRYPAR
Sbjct: 317 LGQTSPVVNAFASGQAAAYKMFETIKRKPKIDSYDASGIAPEDIQGDIELKDIYFRYPAR 376
Query: 388 PEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLK 447
P+VQIF+GFSL VPSGTTAALVG SGSGKSTVISL+ERFYDPD+GEVLIDG+++K+ +L+
Sbjct: 377 PDVQIFSGFSLFVPSGTTAALVGHSGSGKSTVISLLERFYDPDSGEVLIDGVNLKQYKLR 436
Query: 448 WIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMA 507
WIREKIGLVSQEPILF T++RENI YGK+NAT++E+R AIELANAAKFIDKLPKGLDTM
Sbjct: 437 WIREKIGLVSQEPILFTTTIRENILYGKDNATEEEVRAAIELANAAKFIDKLPKGLDTMV 496
Query: 508 GEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVV 567
GEHGTQLSGGQKQRIAI+RAILKNP+ILLLDEATSALD+ESERIVQ+ALV++M +RTTVV
Sbjct: 497 GEHGTQLSGGQKQRIAISRAILKNPRILLLDEATSALDSESERIVQEALVRVMANRTTVV 556
Query: 568 VAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDA 627
VAHRLTTIRN+D IAVVHQGK++E+GTHDELIK+P+G Y+QLVRLQ + T+
Sbjct: 557 VAHRLTTIRNSDNIAVVHQGKLLEQGTHDELIKNPDGAYSQLVRLQ---EGTTTGTETET 613
Query: 628 DKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQG 687
+ ++ + D LDK M S S+ S+ RSISR SSGSR SF + +PG +++ + E D G
Sbjct: 614 NPINDAID-LDKTMGSSASKRTSVIRSISRTSSGSRRSFTINFAIPGSVHIHDQEIDDDG 672
Query: 688 GAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFF 747
E T IEK +++SM+RLA LNKPE PVLL+G IAA ++G++FPIFGLLLSS+I MF+
Sbjct: 673 PKEMT--WIEKPKQVSMKRLATLNKPEMPVLLLGCIAAVMNGMVFPIFGLLLSSAIGMFY 730
Query: 748 EPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEIS 807
+P +L K+S+FWALIYL LG + A+P QNYFFG+AGGKLI RIRSLTF K+VHQ+IS
Sbjct: 731 KPASQLEKESKFWALIYLGLGCLTFFALPTQNYFFGIAGGKLIERIRSLTFXKIVHQQIS 790
Query: 808 WFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVIL 867
+FDDPAN+SG++GARLSTDA+T+R LVGD+LALVVQNIATI AGLIIAFTANWILA VI+
Sbjct: 791 YFDDPANASGAIGARLSTDAATVRGLVGDALALVVQNIATITAGLIIAFTANWILALVII 850
Query: 868 AVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEK 927
VSPL+LVQGY QTKF KGFSADAK+MYEEASQVANDAVGSIRTVASFCSE+KVMDLYEK
Sbjct: 851 GVSPLLLVQGYLQTKFTKGFSADAKIMYEEASQVANDAVGSIRTVASFCSEKKVMDLYEK 910
Query: 928 KCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALT 987
KCE P+KNGVR G++SGAGFGFSF L+CTNAFCFYIGS+LV HGKATF +VFKV FALT
Sbjct: 911 KCEDPVKNGVRLGLVSGAGFGFSFFALFCTNAFCFYIGSILVNHGKATFPEVFKVLFALT 970
Query: 988 ISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSF 1047
ISA+ V TSA+APD++KAKDSAASIFEILDSKPKIDSS EG+TL+SV G IE VSF
Sbjct: 971 ISAM-VFPTSALAPDSSKAKDSAASIFEILDSKPKIDSSSSEGVTLTSVIGNIEFDHVSF 1029
Query: 1048 KYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELP 1107
KYPTRPD+QIFR+LCL IPSGKTVALVGESGSGKSTVI+LIERFYDPDSG LLD +E+
Sbjct: 1030 KYPTRPDIQIFRDLCLRIPSGKTVALVGESGSGKSTVISLIERFYDPDSGRTLLDGVEIH 1089
Query: 1108 KFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGK-QGGATEEEIIAATEASNAHNFISALP 1166
KFKLSWLRQQMGLVSQEP+LFNETIR+NIAYGK + A+EEEII A +A+NAHNFIS+LP
Sbjct: 1090 KFKLSWLRQQMGLVSQEPILFNETIRSNIAYGKPENAASEEEIIGAAKAANAHNFISSLP 1149
Query: 1167 HGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM 1226
GYET+VGERGVQLSGGQKQRIAIARA+LKNPKILLLDEATSALDAESERVVQDAL+RVM
Sbjct: 1150 EGYETSVGERGVQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERVVQDALDRVM 1209
Query: 1227 VNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVSSS 1283
VNRTTVVVAHRLTTI+ ADIIAVVKNGVIAE+GSH+ LMKI+DGAYASLVALH +SS
Sbjct: 1210 VNRTTVVVAHRLTTIRGADIIAVVKNGVIAEKGSHEELMKISDGAYASLVALHSTSS 1266
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147796332|emb|CAN77320.1| hypothetical protein VITISV_009891 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1915 bits (4962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 941/1227 (76%), Positives = 1084/1227 (88%), Gaps = 9/1227 (0%)
Query: 32 DNQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVH 91
D +KVPFYKLF+FADK D LMIVGT+ A+ +G+ P MTLIFG LIN+FG SD SHVVH
Sbjct: 19 DEEKVPFYKLFSFADKLDVGLMIVGTVCAMANGMTQPLMTLIFGQLINTFGDSDPSHVVH 78
Query: 92 EVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTT 151
EVS+ L + +VS WMVTGERQATRIRGLYLKTILRQDI FFDTETTT
Sbjct: 79 EVSRKTSNKLPVIV-------TEVSSWMVTGERQATRIRGLYLKTILRQDIAFFDTETTT 131
Query: 152 GEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIA 211
GEVIGRMSGDTILIQ+AMGEKVGKFIQLMSTF GGF++A ARGW L+LVLL +P +VI+
Sbjct: 132 GEVIGRMSGDTILIQDAMGEKVGKFIQLMSTFLGGFIIAFARGWLLSLVLLPSIPLLVIS 191
Query: 212 GGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAA 271
GG+MA+IMS+MSSRGQ+AY+EAG VVEQTV IRTV+SFTGEK+AI+ Y+NKL +AY +
Sbjct: 192 GGTMAIIMSRMSSRGQLAYAEAGNVVEQTVGAIRTVASFTGEKKAIKNYDNKLHIAYAST 251
Query: 272 VQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQT 331
VQQG+ SGIGLG ++L + GTYGLA+WYGSKL+IE+GY+GG VIN IMAIM+GGMSLGQT
Sbjct: 252 VQQGLASGIGLGTVLLIIFGTYGLAMWYGSKLVIERGYDGGRVINCIMAIMSGGMSLGQT 311
Query: 332 SPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQ 391
SPCLNAFA GQAAAYKMFETIKRKP+ID YDTSG LE I GEIEL+DVYF YPARP+VQ
Sbjct: 312 SPCLNAFAAGQAAAYKMFETIKRKPQIDAYDTSGTVLEDIRGEIELKDVYFNYPARPDVQ 371
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
IF+G SLHVPSG TAALVGQSGSGKSTVISL+ERFYDP +GEVLIDG+D+K+LQLKWIRE
Sbjct: 372 IFSGXSLHVPSGKTAALVGQSGSGKSTVISLLERFYDPHSGEVLIDGVDLKQLQLKWIRE 431
Query: 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHG 511
KIGLVSQEPILFAT+++ENI+YGKE+A+D+EIRTAI LANAAKFIDKLPKGLDTM GEHG
Sbjct: 432 KIGLVSQEPILFATTIKENISYGKEDASDEEIRTAIVLANAAKFIDKLPKGLDTMVGEHG 491
Query: 512 TQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHR 571
TQLSGGQKQRIAIARAILKNP+ILLLDEATSALDAESERIVQDALV +M +RTTVVVAHR
Sbjct: 492 TQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQDALVNVMVNRTTVVVAHR 551
Query: 572 LTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLD 631
LTTIRNAD+IAVV+QGKIVE+GTH ELIKDP+G YTQLV LQEG+ +A DA D DKLD
Sbjct: 552 LTTIRNADIIAVVYQGKIVEQGTHGELIKDPDGAYTQLVHLQEGNSQAXDAHXEDTDKLD 611
Query: 632 SSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQGGAER 691
S D +D ++ RSGS+ S+ RS+SR SS R S ++ VP PI + TE Q ER
Sbjct: 612 KSPDNMDNSIARSGSQRLSLWRSMSRGSSSGRSSVSLSFSVPFPIGIPATEMAGQ-DIER 670
Query: 692 TPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPED 751
EKR+K+S+RRLAYLNKPE PVLL+GSIAAGIHGVIFPIFGLLLS++I++FFEP +
Sbjct: 671 RDGEDEKRRKVSLRRLAYLNKPEVPVLLLGSIAAGIHGVIFPIFGLLLSTAIKIFFEPPN 730
Query: 752 KLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDD 811
+L+KDSRFWAL+++ LG++ L+ VP QNYFFGVAGGKLI+RIRSL+FEKVVHQEISWFDD
Sbjct: 731 ELKKDSRFWALMFVGLGVLTLMVVPVQNYFFGVAGGKLIQRIRSLSFEKVVHQEISWFDD 790
Query: 812 PANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSP 871
PANSSG+VGARLSTDAS++RSLVGD+LALVVQN+ T+ AGL+I+FTANWILA +ILAV P
Sbjct: 791 PANSSGAVGARLSTDASSVRSLVGDALALVVQNLTTVIAGLVISFTANWILALIILAVLP 850
Query: 872 LMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEG 931
L+ +QGY Q KF+KGFSADAK+MYEEASQVANDAVGSIRTVASFC+E+KVMD+Y++KC+
Sbjct: 851 LVFLQGYFQMKFVKGFSADAKVMYEEASQVANDAVGSIRTVASFCAEKKVMDMYQQKCDA 910
Query: 932 PLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISAL 991
P+K GVR G++SGAGFGFSF LYCTNAFCFYIG++LV+HGKATFG+VFKVFFALTISA+
Sbjct: 911 PMKQGVRLGLVSGAGFGFSFFALYCTNAFCFYIGAILVQHGKATFGEVFKVFFALTISAI 970
Query: 992 GVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPT 1051
G+SQTSAMAPDT KAKDS A+IF++LDSKP IDSS +EG TL++V G IE + VSFKY T
Sbjct: 971 GISQTSAMAPDTNKAKDSTATIFQLLDSKPTIDSSSNEGKTLANVKGDIEFQHVSFKYST 1030
Query: 1052 RPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKL 1111
RPDVQIFR+L LSIPSGKTVALVGESGSGKSTVI+LIERFY+P+SG +LLD +E+ K KL
Sbjct: 1031 RPDVQIFRDLSLSIPSGKTVALVGESGSGKSTVISLIERFYNPESGRILLDGMEIQKLKL 1090
Query: 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYET 1171
SWLRQQMGLV QEPVLFNETIR NIAYGK+ GATE+EIIAAT+A+NAHNFI +LP GYET
Sbjct: 1091 SWLRQQMGLVGQEPVLFNETIRANIAYGKE-GATEDEIIAATKAANAHNFIHSLPQGYET 1149
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTT 1231
+VGERGVQLSGGQKQRIAIARA+LK+PKILLLDEATSALDAESERVVQ+AL+RVMV RTT
Sbjct: 1150 SVGERGVQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQEALDRVMVERTT 1209
Query: 1232 VVVAHRLTTIKNADIIAVVKNGVIAEQ 1258
VVVAHRLTTIK ADIIAVVKNGVIAE+
Sbjct: 1210 VVVAHRLTTIKGADIIAVVKNGVIAEK 1236
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546526|ref|XP_003541677.1| PREDICTED: ABC transporter B family member 9-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1905 bits (4936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 913/1246 (73%), Positives = 1089/1246 (87%)
Query: 34 QKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEV 93
+KVPFYKLF FAD D +MI+G ISA+ +G++ P M+LIFG +IN+FGS+D SH+V EV
Sbjct: 14 EKVPFYKLFTFADHLDMTMMIIGVISAMANGMSQPLMSLIFGKMINAFGSTDPSHIVQEV 73
Query: 94 SKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGE 153
SKVA+ F+Y+A G GI +FLQVSCWM+TGERQA RIRGLYLKTIL+QDI FFDTETTTGE
Sbjct: 74 SKVALLFVYVAFGAGITSFLQVSCWMMTGERQAARIRGLYLKTILKQDITFFDTETTTGE 133
Query: 154 VIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGG 213
VIGRMSGDTILIQ+AMGEKVGKFIQL+S FFGGFV+A +GW L LVLLAC+P IV+ GG
Sbjct: 134 VIGRMSGDTILIQDAMGEKVGKFIQLVSAFFGGFVIAFTKGWELCLVLLACIPCIVVVGG 193
Query: 214 SMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQ 273
M+++M+KMS+RGQ AY+EAG VVEQTV IRTV+SFTGEK+AIEKYNNKL++AY VQ
Sbjct: 194 IMSMMMAKMSTRGQAAYAEAGIVVEQTVGAIRTVASFTGEKKAIEKYNNKLRIAYATTVQ 253
Query: 274 QGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSP 333
QG+ SG G+GVL+L + TY LA+WYGSKLIIEKGY+GG+V N+IM+I TGGMSLGQ +P
Sbjct: 254 QGLASGFGMGVLLLIIFCTYALAMWYGSKLIIEKGYDGGSVFNIIMSINTGGMSLGQAAP 313
Query: 334 CLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIF 393
C+NAFA GQAAAYKMFETIKRKPKID YDT+G+ LE+I G+IEL+DV+FRYPARP+VQIF
Sbjct: 314 CVNAFAAGQAAAYKMFETIKRKPKIDAYDTNGVVLEEIRGDIELKDVHFRYPARPDVQIF 373
Query: 394 AGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453
+GFS ++PSG TAA VGQSGSGKST+ISL+ERFYDP+AGEVLIDG+++K Q++WIRE+I
Sbjct: 374 SGFSFYIPSGKTAAFVGQSGSGKSTIISLLERFYDPEAGEVLIDGVNLKNFQVRWIREQI 433
Query: 454 GLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQ 513
GLV QEPILF S++ENIAYGKE ATD+EI TAI LANA KFIDKLP+G+DTM G HGTQ
Sbjct: 434 GLVGQEPILFTASIKENIAYGKEGATDEEITTAITLANAKKFIDKLPQGIDTMVGGHGTQ 493
Query: 514 LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLT 573
LSGGQKQRIAIARAILKNP+ILLLDEATSALDAESERIVQ+AL K+M+ RTTVVVAHRLT
Sbjct: 494 LSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALEKVMSQRTTVVVAHRLT 553
Query: 574 TIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSS 633
TIRNAD+IAV+HQGKIVEKGTHDELIKD +G Y+QL+RLQEG+K A+ + ++ADK +++
Sbjct: 554 TIRNADIIAVIHQGKIVEKGTHDELIKDADGSYSQLIRLQEGNKGADVSRKSEADKSNNN 613
Query: 634 FDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQGGAERTP 693
LD M RS ++ S RSIS+ S+ SRHS +P I + ++ EGD E +
Sbjct: 614 SFNLDSHMARSLTKRTSFARSISQGSTSSRHSLSLGLALPYQIPLHKSGEGDNEDVESSE 673
Query: 694 LMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKL 753
+ +K QK+ + RLA LNKPE PVLL+GSIAA IHGVI PIFGLLLSS+I F++P ++L
Sbjct: 674 VDNKKNQKVPINRLAKLNKPEVPVLLLGSIAAAIHGVILPIFGLLLSSAINTFYKPPNEL 733
Query: 754 RKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPA 813
RKDS FW+L+++ LG++ L+A+P QNY FG+AGGKLI RI SLTF KVVHQEISWFD P+
Sbjct: 734 RKDSEFWSLLFVGLGVVTLVAIPVQNYLFGIAGGKLIERICSLTFNKVVHQEISWFDRPS 793
Query: 814 NSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLM 873
NSSG+V ARL+T AST+RSLVGD+LAL+VQNIAT++AGL+IAFTANWILAFVILAVSPL+
Sbjct: 794 NSSGAVSARLATGASTVRSLVGDTLALIVQNIATVSAGLVIAFTANWILAFVILAVSPLL 853
Query: 874 LVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPL 933
L+QGY QTKF+KGFSADAK+MYEEASQVA DAVGSIRTVASFC+E KVM++Y KKC GP
Sbjct: 854 LIQGYLQTKFVKGFSADAKVMYEEASQVATDAVGSIRTVASFCAEPKVMEMYRKKCSGPE 913
Query: 934 KNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGV 993
K GVR G++SGAG GFSF+VLYCTNAFCFYIGS+LV+HGKATFG+VFKVFFALTI+A+GV
Sbjct: 914 KQGVRLGLVSGAGLGFSFVVLYCTNAFCFYIGSILVQHGKATFGEVFKVFFALTITAVGV 973
Query: 994 SQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRP 1053
SQ+SA+APDT KAKDSAASIFEILDSKP IDSS DEG TL +V G IEL+ VSF YPTRP
Sbjct: 974 SQSSALAPDTNKAKDSAASIFEILDSKPAIDSSSDEGTTLDTVKGEIELQQVSFCYPTRP 1033
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW 1113
++QIF+++CL++P+GKTVALVGESGSGKSTVI+L+ERFY+PDSG +L+D +++ +FKL+W
Sbjct: 1034 NIQIFKDMCLTMPTGKTVALVGESGSGKSTVISLLERFYNPDSGRILIDGVDIKEFKLNW 1093
Query: 1114 LRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNV 1173
LRQQMGLV QEP+LFN++IR NIAY K+GGATEEEIIAA +A+NAH FIS+LPHGY+T+V
Sbjct: 1094 LRQQMGLVGQEPILFNDSIRANIAYSKEGGATEEEIIAAAQAANAHKFISSLPHGYDTSV 1153
Query: 1174 GERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVV 1233
GERG QLSGGQKQRIAIARA+LK+P+ILLLDEATSALDAESE VVQ+AL+RV VNRTTVV
Sbjct: 1154 GERGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEGVVQEALDRVSVNRTTVV 1213
Query: 1234 VAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALH 1279
+AHRLTTIK ADIIAVVKNG IAE+G HDALMKI G YASLVALH
Sbjct: 1214 IAHRLTTIKGADIIAVVKNGAIAEKGGHDALMKIDGGVYASLVALH 1259
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110226562|gb|ABG56413.1| MDR-like ABC transporter [Catharanthus roseus] | Back alignment and taxonomy information |
|---|
Score = 1897 bits (4913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 923/1262 (73%), Positives = 1094/1262 (86%), Gaps = 8/1262 (0%)
Query: 25 NNKNDGNDNQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSS 84
N+ + DN+KVPF KLF+FAD D LMI+GT+ IG+GLA P MT+I G LIN+FG++
Sbjct: 10 NSPSSSKDNEKVPFLKLFSFADGMDIALMIIGTLGGIGNGLAQPIMTVILGQLINTFGTN 69
Query: 85 --DRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDI 142
D+S ++H+V +V++K++YLA G G+A+FLQ+SCWMVTGERQATRIRGLYLKTILRQDI
Sbjct: 70 IYDKSEILHQVGQVSLKYVYLAIGAGMASFLQMSCWMVTGERQATRIRGLYLKTILRQDI 129
Query: 143 GFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLL 202
GFFDTET+TGEVIGRMSGDTILIQEAMGEKVGKFIQ STF GGF++A +GW LALVL
Sbjct: 130 GFFDTETSTGEVIGRMSGDTILIQEAMGEKVGKFIQFSSTFIGGFLIAFIKGWLLALVLT 189
Query: 203 ACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNN 262
ACLP +V G M+L MSKM+S+GQ+AY+EAG V+EQTV GIRTV+SFTGEK AI+KYNN
Sbjct: 190 ACLPLLVATGAVMSLFMSKMASQGQVAYAEAGNVLEQTVGGIRTVASFTGEKLAIQKYNN 249
Query: 263 KLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIM 322
KL+VAYR V+QG SG G G L+L V YGLA++YGS+LIIEKGYNGG VINV+MAIM
Sbjct: 250 KLKVAYRTTVKQGFASGAGFGTLLLVVFCIYGLAIYYGSRLIIEKGYNGGRVINVMMAIM 309
Query: 323 TGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYF 382
GGMSLGQTSP L+AFA GQAAAYKMFETIKRKP+ID YDTSGI LE I+GEIEL+DVYF
Sbjct: 310 MGGMSLGQTSPSLSAFAAGQAAAYKMFETIKRKPQIDAYDTSGIVLEDIKGEIELKDVYF 369
Query: 383 RYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIK 442
RYPARPEVQIF+GFSL+VPSGTTAALVGQSGSGKSTVISL+ERFYDP+AGEVLIDG+++K
Sbjct: 370 RYPARPEVQIFSGFSLYVPSGTTAALVGQSGSGKSTVISLLERFYDPEAGEVLIDGVNLK 429
Query: 443 KLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKG 502
K++L+W+RE++GLVSQEPILFAT+++ENI YGK NATD EIRTAI+LANAAKFIDKLP+G
Sbjct: 430 KMRLRWLREQLGLVSQEPILFATTIKENILYGKSNATDSEIRTAIQLANAAKFIDKLPQG 489
Query: 503 LDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS 562
LDTM GEHGTQLSGGQKQRIAIARAILKNP+ILLLDEATSALDAESERIVQDAL +M++
Sbjct: 490 LDTMVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQDALDNVMSN 549
Query: 563 RTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDA 622
RTTVVVAHRL+TIRNA LIAVV GK+VE+GTH ELIKDP G Y+QL+R+Q+GSK+ ED+
Sbjct: 550 RTTVVVAHRLSTIRNAHLIAVVQSGKLVEQGTHAELIKDPNGAYSQLIRMQQGSKDTEDS 609
Query: 623 LATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETE 682
D +KLD+ D D+ + +S S+ M S SR SF F YG+PG + + ETE
Sbjct: 610 RLLDVEKLDAEIDA-DETLMKSPSQ--RMSLRRSSSRGSSRKSFTFNYGIPGLVEIHETE 666
Query: 683 EG-DQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSS 741
G D+ + T ++ K K+S +RLA LNKPE P LL+GS+AA IHGVIFP+FGLLLS
Sbjct: 667 VGEDEAEGDNTDIVSHK--KVSFKRLAILNKPEIPQLLLGSVAAIIHGVIFPVFGLLLSK 724
Query: 742 SIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKV 801
S+R+ +EP +LRKD+RFW L+Y+ LGII L+ +P QNYFFG+AGGKLI RIRSL+FEKV
Sbjct: 725 SVRIMYEPPHQLRKDARFWCLMYVGLGIITLLVLPLQNYFFGIAGGKLIERIRSLSFEKV 784
Query: 802 VHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWI 861
VHQEISWFDD NSSG+VGARLS+DAST+RSLVGD+LALVVQNIAT+AAGL+I+FTANWI
Sbjct: 785 VHQEISWFDDSKNSSGAVGARLSSDASTLRSLVGDALALVVQNIATVAAGLVISFTANWI 844
Query: 862 LAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKV 921
LA +ILAV PL+ +QG+ Q KF KGFSADAK+MYEEASQVANDAVGSIRTVASFC+EEKV
Sbjct: 845 LALIILAVLPLVGLQGFLQMKFYKGFSADAKVMYEEASQVANDAVGSIRTVASFCAEEKV 904
Query: 922 MDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFK 981
M++Y++KCEGP+K GVR G++SGAG G YC +AFCFYIG+VLV HGKATFG+VF+
Sbjct: 905 MEMYQRKCEGPVKQGVRLGMVSGAGLGIGNGANYCASAFCFYIGAVLVFHGKATFGEVFR 964
Query: 982 VFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIE 1041
VFFALT+SA+GVSQ A+APD K K SAAS+FEILD+KPKIDSS ++G TL+SV G IE
Sbjct: 965 VFFALTMSAMGVSQAMALAPDVNKTKQSAASVFEILDAKPKIDSSSNKGQTLASVKGDIE 1024
Query: 1042 LRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLL 1101
L+ +SFKYPTRPD+QIF+ LCLSIP GKTVALVGESGSGKSTVI+LIERFYDPDSG++ L
Sbjct: 1025 LQHISFKYPTRPDIQIFKGLCLSIPCGKTVALVGESGSGKSTVISLIERFYDPDSGNIYL 1084
Query: 1102 DNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNF 1161
D +EL K K+SWLRQQMGLVSQEPVLFNE+IR NIAYGKQG ATE+EIIAAT+ASNAH+F
Sbjct: 1085 DGVELQKLKISWLRQQMGLVSQEPVLFNESIRDNIAYGKQGNATEDEIIAATKASNAHSF 1144
Query: 1162 ISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDA 1221
IS+LP+GY+T+VGERGVQLSGGQKQRIAIARA+LK+P+ILLLDEATSALDAESER+VQDA
Sbjct: 1145 ISSLPNGYDTSVGERGVQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQDA 1204
Query: 1222 LERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVS 1281
L++VMVNRTTVVVAHRL+TIK AD+IAVVKNGVI+E+G HD LMK+ +G YASLV+L S
Sbjct: 1205 LDKVMVNRTTVVVAHRLSTIKGADVIAVVKNGVISEKGRHDELMKMENGVYASLVSLQSS 1264
Query: 1282 SS 1283
++
Sbjct: 1265 AA 1266
|
Source: Catharanthus roseus Species: Catharanthus roseus Genus: Catharanthus Family: Apocynaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557457|ref|XP_002519759.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223541176|gb|EEF42732.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1889 bits (4893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 910/1272 (71%), Positives = 1076/1272 (84%), Gaps = 9/1272 (0%)
Query: 15 KRGDNNNNINNNKNDGNDNQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIF 74
+R +++ + K D+QKV FYKLF FAD D VLMIVG++SAI +GL+ P +TLIF
Sbjct: 4 EREASSSQVQGQKISNGDDQKVAFYKLFTFADGLDVVLMIVGSLSAIANGLSQPAVTLIF 63
Query: 75 GHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYL 134
G LIN FG+ S +VH VSK+AVKF+YLA T A LQVSCWMVTGERQ+ RIRGLYL
Sbjct: 64 GQLINYFGTLQSSEIVHHVSKLAVKFVYLAIATSTVALLQVSCWMVTGERQSARIRGLYL 123
Query: 135 KTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARG 194
KTILRQDIGFFD ET+TGEVIGRMSGDTILIQEAMGEKVGK IQL+STF G F+VA +G
Sbjct: 124 KTILRQDIGFFDAETSTGEVIGRMSGDTILIQEAMGEKVGKSIQLISTFVGCFIVAFVKG 183
Query: 195 WFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEK 254
W LALVLL+C+P +V G +AL+ +K++SRGQIAY+EAG VVEQTV IRTV+SF+GEK
Sbjct: 184 WLLALVLLSCIPCLVFTGAVLALLTTKIASRGQIAYAEAGNVVEQTVGAIRTVASFSGEK 243
Query: 255 QAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTV 314
+I+KYN KL++AY+A VQ+G+ SG+G+G++M + G+YGLA+WYG+KL IEKGYNGG V
Sbjct: 244 PSIQKYNEKLKLAYKATVQEGLASGLGIGLMMFVIFGSYGLALWYGAKLTIEKGYNGGQV 303
Query: 315 INVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGE 374
INV+ +IMTGGMSLGQ SPCL+ FA GQAAAYKMFETIKRKPKID YD +G+ LE I GE
Sbjct: 304 INVMFSIMTGGMSLGQASPCLHTFAVGQAAAYKMFETIKRKPKIDLYDANGMVLEHINGE 363
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IEL+DVYFRYPARP+VQIF+G SL +P GTTAALVGQSG+GKSTVISL+ERFYDPD+G+V
Sbjct: 364 IELKDVYFRYPARPDVQIFSGLSLKIPCGTTAALVGQSGNGKSTVISLIERFYDPDSGQV 423
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAK 494
LIDG+D+KKL+L WIR KIGLVSQEPILFA S++ENIAYGKENATDQEIRTAIELANAAK
Sbjct: 424 LIDGVDLKKLKLNWIRGKIGLVSQEPILFAASIKENIAYGKENATDQEIRTAIELANAAK 483
Query: 495 FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD 554
FI K+PKGLDT GEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESE IVQ+
Sbjct: 484 FIGKMPKGLDTKVGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESESIVQE 543
Query: 555 ALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQE 614
AL KIM +RTTVVVAHRL+TIRNAD+IAVV GKIVEKGTH+ELIKD EG Y+QLV LQE
Sbjct: 544 ALEKIMCNRTTVVVAHRLSTIRNADMIAVVQMGKIVEKGTHEELIKDMEGAYSQLVCLQE 603
Query: 615 GSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFT---YG 671
G K+ E++ AD L+ S D + +R+GS +S +SISR SSG RHSF +
Sbjct: 604 GIKKTENSCVRIADILEISLDT-SRPRSRAGSLKQSTLKSISRGSSGRRHSFTVSALGLS 662
Query: 672 VPGPINVFETEEGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVI 731
+P PI+ E E +Q ER ++K +++S+R+LAYLNKPE PVLL+G+ AA +HG+
Sbjct: 663 MPDPISFHEIEMHEQ-RTER----LKKPKEVSIRKLAYLNKPELPVLLVGTTAAALHGIT 717
Query: 732 FPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIR 791
PIFGLL S++I + ++P ++LRKDSR WAL+Y+ +G+++ I +P QN+FFG+AGGKLI
Sbjct: 718 LPIFGLLFSTAINVLYKPPNELRKDSRTWALVYVGIGLVDFILLPVQNFFFGIAGGKLIE 777
Query: 792 RIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAG 851
RIR +TFEKVVHQEISWFDDP NSSG+VGARLS DA+T+R+LVGD+LAL+VQNIAT+AAG
Sbjct: 778 RIRCMTFEKVVHQEISWFDDPVNSSGAVGARLSVDATTVRTLVGDTLALLVQNIATVAAG 837
Query: 852 LIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRT 911
L+IAF ANWILAF+ILAVSPLM+ QGY Q KF+KGFS DAKLMYEEASQVANDAVGSIRT
Sbjct: 838 LVIAFRANWILAFIILAVSPLMIFQGYIQVKFLKGFSGDAKLMYEEASQVANDAVGSIRT 897
Query: 912 VASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEH 971
VASFC+E+KVMDLY+KKCEGP K GVR G++SGAGFG SF ++YCTNAFCFY+GS+LV+H
Sbjct: 898 VASFCAEKKVMDLYQKKCEGPRKQGVRLGLVSGAGFGLSFFIIYCTNAFCFYMGSILVQH 957
Query: 972 GKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGM 1031
GKATF +VFKVFFALTI+ LGVSQ+S ++ D KAK+SA+SIF I+D K KIDS+ DEG+
Sbjct: 958 GKATFEEVFKVFFALTIATLGVSQSSGLSSDAIKAKNSASSIFTIIDRKSKIDSNSDEGI 1017
Query: 1032 TLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERF 1091
L V G IE VSFKYP RP+VQIF++L LSIPSGKT ALVGESGSGKST+I LIERF
Sbjct: 1018 ILPYVNGDIEFENVSFKYPMRPNVQIFKDLSLSIPSGKTAALVGESGSGKSTIINLIERF 1077
Query: 1092 YDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIA 1151
YDPDSGH+ LDN+E+ K KLSWLRQQMGLVSQEPVLFNETIR NIAYGKQG TEEEIIA
Sbjct: 1078 YDPDSGHIYLDNVEIKKLKLSWLRQQMGLVSQEPVLFNETIRANIAYGKQGDVTEEEIIA 1137
Query: 1152 ATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
A +A+NAHNFIS+LP GY+ VGERGVQ+SGGQKQRIAIARA+LKNP+ILLLDEATSALD
Sbjct: 1138 AAKAANAHNFISSLPQGYDACVGERGVQMSGGQKQRIAIARAILKNPRILLLDEATSALD 1197
Query: 1212 AESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGA 1271
ESER+VQDAL+ M NRTT++VAHRL TIK AD+IAVVKNGVIAE+G HD L+KI +GA
Sbjct: 1198 VESERIVQDALDTAMENRTTIIVAHRLNTIKGADLIAVVKNGVIAEKGKHDVLIKINNGA 1257
Query: 1272 YASLVALHVSSS 1283
YASLVAL S +
Sbjct: 1258 YASLVALQFSKT 1269
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357447131|ref|XP_003593841.1| ABC transporter B family member [Medicago truncatula] gi|355482889|gb|AES64092.1| ABC transporter B family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1882 bits (4874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 914/1271 (71%), Positives = 1087/1271 (85%), Gaps = 17/1271 (1%)
Query: 19 NNNNINNNKNDGNDNQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLI 78
+N ++ ++ D NQKV F+KLF FAD D LMI+GTISA+ +G+ P MTLI G +I
Sbjct: 3 HNTEVDEHERDNKANQKVSFHKLFTFADSLDVTLMIIGTISAVANGMTQPIMTLILGKII 62
Query: 79 NSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTIL 138
N+FGS D H+V EVSKV++ F+YLAAG+GI +FLQVSCWMVTGERQ+ RIR LYLKTIL
Sbjct: 63 NTFGSIDPHHIVKEVSKVSLLFIYLAAGSGIVSFLQVSCWMVTGERQSARIRSLYLKTIL 122
Query: 139 RQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLA 198
+QDI FFDTET TGEVIGRMSGDTILIQ+AMGEKVGKFIQL +TFFGGF VA +GW LA
Sbjct: 123 KQDIAFFDTETNTGEVIGRMSGDTILIQDAMGEKVGKFIQLAATFFGGFAVAFIKGWRLA 182
Query: 199 LVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIE 258
+VL+AC+P +V+ GG M+++M+KMSSRGQ AYSEAG VV+QTV IRTV+SFTGEK+AIE
Sbjct: 183 VVLVACIPCVVVVGGFMSMLMAKMSSRGQAAYSEAGNVVDQTVGAIRTVASFTGEKKAIE 242
Query: 259 KYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVI 318
YN+KL+VAY VQQG+ SG+G+G L L V TYGLA+WYGSKL++EKGY GG V+ VI
Sbjct: 243 NYNSKLKVAYTTTVQQGIASGLGMGTLSLIVFSTYGLAMWYGSKLVLEKGYTGGIVMVVI 302
Query: 319 MAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELR 378
+A+MTGGMSLGQTSPCL+AFA GQAAAYKMFETIKRKPKID YDTSG L+ I G+IEL+
Sbjct: 303 IALMTGGMSLGQTSPCLDAFAAGQAAAYKMFETIKRKPKIDAYDTSGTVLKDINGDIELK 362
Query: 379 DVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDG 438
DVYF YPARP+VQIF GFSL VPSGTT ALVGQSGSGKSTVISL+ERFYDPDAGEVLIDG
Sbjct: 363 DVYFSYPARPDVQIFDGFSLFVPSGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDG 422
Query: 439 IDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDK 498
+++K LQLKWIRE+IGLVSQEPILF T++RENIAYGKE ATD+EI TAI LANA FIDK
Sbjct: 423 VNLKNLQLKWIREQIGLVSQEPILFTTTIRENIAYGKEGATDEEITTAITLANAKNFIDK 482
Query: 499 LPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVK 558
LP+GLDTMAG++GTQLSGGQKQRIAIARAILKNP+ILLLDEATSALDAESER+VQ+AL K
Sbjct: 483 LPQGLDTMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALEK 542
Query: 559 IMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKE 618
+MT RTTVVVAHRLTTIRNADLIAVVHQGKIVEKG HDELIKD +G Y+QL+RLQEG KE
Sbjct: 543 VMTQRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGAHDELIKDDDGAYSQLIRLQEGEKE 602
Query: 619 AEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINV 678
+ + A D+S I + M+RS +R S+ +SIS+ SSG RHS + +P V
Sbjct: 603 NQKSEA------DNSSHIFNSEMSRSSNRRISLVKSISQRSSG-RHSQSNIFPLPHESGV 655
Query: 679 FETEEGDQGGAERTPLMIEKRQK-LSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGL 737
+ D+ E L +K+ K +S+RRLAYLNKPE PVLL+GSIAA ++G +FP+FGL
Sbjct: 656 ----QTDEPNIEEGQLDNKKKHKNVSIRRLAYLNKPEVPVLLLGSIAAIVNGAVFPVFGL 711
Query: 738 LLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLT 797
+ SS+I MF+EP + RKD+R W+L+Y+ LG++ L+ +P QNYFFG+AGGKL+ RIRSLT
Sbjct: 712 VFSSAITMFYEPPKQQRKDARLWSLLYVGLGLVTLVILPLQNYFFGIAGGKLVERIRSLT 771
Query: 798 FEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFT 857
F KVVHQEISWFDDPANSSG+VGARLSTDAST++SLVGD+LAL+VQN++TI AGLI+AFT
Sbjct: 772 FAKVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNLSTITAGLILAFT 831
Query: 858 ANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCS 917
+NWILAF++LAVSP++L+QG Q +F+KGFS DAK+MYEEASQVANDAVGSIRTVASF +
Sbjct: 832 SNWILAFIVLAVSPVVLIQGIIQMQFLKGFSGDAKVMYEEASQVANDAVGSIRTVASFNA 891
Query: 918 EEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFG 977
E KVMD+Y+KKC GP K GV G++SGAGFGFSF+ LYC +AFCFYIGSVLV+HGKATF
Sbjct: 892 ESKVMDMYQKKCSGPEKQGVHSGLVSGAGFGFSFVALYCMSAFCFYIGSVLVQHGKATFQ 951
Query: 978 QVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVG 1037
+VFKVFF+LTI+A+G+SQ+S +APDT KAKDSAASIFEILDS P IDSS +EG+TL +V
Sbjct: 952 EVFKVFFSLTITAVGISQSSTLAPDTNKAKDSAASIFEILDSNPTIDSSSNEGVTLETVT 1011
Query: 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGK-----TVALVGESGSGKSTVIALIERFY 1092
G IEL+ VSF YPTRP +QIF++LCL IP+GK TVALVGESGSGKSTVI+L+ERFY
Sbjct: 1012 GDIELQHVSFNYPTRPHIQIFKDLCLYIPAGKVIITLTVALVGESGSGKSTVISLLERFY 1071
Query: 1093 DPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAA 1152
+PDSG +LLD +++ F+LSWLRQQMGLV QEP+LFNE+IR NIAYGK+GGA E+EIIAA
Sbjct: 1072 NPDSGRILLDGVDIKTFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGAMEDEIIAA 1131
Query: 1153 TEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
+A+NAHNFIS+LP+GY+T+VGERG QLSGGQKQRIAIARA+LKNPKILLLDEATSALDA
Sbjct: 1132 AKAANAHNFISSLPNGYDTSVGERGTQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 1191
Query: 1213 ESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAY 1272
ESER+VQ+AL+RV VNRTTVVVAHRLTTI+ AD IAV+KNGV+AE+G H+ LMKITDG Y
Sbjct: 1192 ESERIVQEALDRVSVNRTTVVVAHRLTTIRGADTIAVIKNGVVAEKGRHEVLMKITDGVY 1251
Query: 1273 ASLVALHVSSS 1283
ASLVALH S+S
Sbjct: 1252 ASLVALHSSAS 1262
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1283 | ||||||
| TAIR|locus:2041434 | 1286 | ABCB4 "ATP-binding cassette B4 | 0.964 | 0.962 | 0.644 | 0.0 | |
| TAIR|locus:2196145 | 1278 | ABCB11 "ATP-binding cassette B | 0.961 | 0.965 | 0.642 | 0.0 | |
| TAIR|locus:2196135 | 1273 | ABCB12 "ATP-binding cassette B | 0.965 | 0.973 | 0.629 | 0.0 | |
| TAIR|locus:2151496 | 1248 | ABCB7 "ATP-binding cassette B7 | 0.469 | 0.482 | 0.728 | 0.0 | |
| TAIR|locus:2141350 | 1229 | ABCB3 "ATP-binding cassette B3 | 0.466 | 0.486 | 0.645 | 0.0 | |
| TAIR|locus:2141365 | 1230 | ABCB5 "ATP-binding cassette B5 | 0.455 | 0.475 | 0.648 | 0.0 | |
| TAIR|locus:2117656 | 1236 | ABCB9 "ATP-binding cassette B9 | 0.634 | 0.658 | 0.670 | 1.1e-293 | |
| TAIR|locus:2090734 | 1252 | ABCB19 "ATP-binding cassette B | 0.450 | 0.461 | 0.500 | 4.1e-283 | |
| UNIPROTKB|Q0JCP1 | 1259 | Os04g0459000 "Os04g0459000 pro | 0.455 | 0.464 | 0.494 | 1.8e-282 | |
| DICTYBASE|DDB_G0291714 | 1432 | abcB3 "ABC transporter B famil | 0.450 | 0.403 | 0.499 | 1.5e-281 |
| TAIR|locus:2041434 ABCB4 "ATP-binding cassette B4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4167 (1471.9 bits), Expect = 0., P = 0.
Identities = 806/1250 (64%), Positives = 1003/1250 (80%)
Query: 36 VPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSK 95
VPFYKLFAFAD D +LMI+GT+ +IG+GL P MTL+FG LI++FG + +++ +VSK
Sbjct: 46 VPFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLIDAFGEN-QTNTTDKVSK 104
Query: 96 VAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVI 155
VA+KF++L GT AAFLQ+S WM++GERQA RIR LYLKTILRQDI FFD +T TGEV+
Sbjct: 105 VALKFVWLGIGTFAAAFLQLSGWMISGERQAARIRSLYLKTILRQDIAFFDIDTNTGEVV 164
Query: 156 GRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSM 215
GRMSGDT+LIQ+AMGEKVGK IQL++TF GGFV+A RGW L LV+L+ +P +V+AG +
Sbjct: 165 GRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFVRGWLLTLVMLSSIPLLVMAGALL 224
Query: 216 ALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQG 275
A++++K +SRGQ AY++A TVVEQT+ IRTV+SFTGEKQAI YN L AY+A V +G
Sbjct: 225 AIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTGEKQAISNYNKHLVTAYKAGVIEG 284
Query: 276 MVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCL 335
+G+GLG L L V +Y LAVWYG KLI++KGY GG V+N+I+A++TG MSLGQTSPCL
Sbjct: 285 GSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGGQVLNIIIAVLTGSMSLGQTSPCL 344
Query: 336 NAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAG 395
+AFA GQAAAYKMFETI+R+P ID Y T+G L+ I+G+IEL+DVYF YPARP+ QIF G
Sbjct: 345 SAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIELKDVYFTYPARPDEQIFRG 404
Query: 396 FSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGL 455
FSL + SGTT ALVGQSGSGKSTV+SL+ERFYDP AG+VLIDGI++K+ QLKWIR KIGL
Sbjct: 405 FSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLIDGINLKEFQLKWIRSKIGL 464
Query: 456 VSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLS 515
VSQEP+LF S+++NIAYGKE+AT +EI+ A ELANA+KF+DKLP+GLDTM GEHGTQLS
Sbjct: 465 VSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFVDKLPQGLDTMVGEHGTQLS 524
Query: 516 GGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTI 575
GGQKQRIA+ARAILK+P+ILLLDEATSALDAESER+VQ+AL +IM +RTTVVVAHRL+T+
Sbjct: 525 GGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTV 584
Query: 576 RNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDS--S 633
RNAD+IAV+HQGKIVEKG+H EL+KDPEG Y+QL+RLQE K E+A + K+ S S
Sbjct: 585 RNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRLQEEKKSDENA--AEEQKMSSIES 642
Query: 634 FDILDKAMTXXXXXXXXXXXXXXXXXXXXXXXFGFTYGVPGPINVFETEEGDQGGAERTP 693
F + FGF G+ G NV + +E D +T
Sbjct: 643 FKQSSLRKSSLGRSLSKGGSSRGNSSRHSFNMFGFPAGIDG--NVVQDQEEDDTTQPKT- 699
Query: 694 LMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKL 753
+ +K+S+ R+A LNKPE PVL++GSI+A +GVI PIFG+L+SS I+ FF+P KL
Sbjct: 700 ----EPKKVSIFRIAALNKPEIPVLILGSISAAANGVILPIFGILISSVIKAFFQPPKKL 755
Query: 754 RKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPA 813
++D+ FWA+I++VLG ++IA P Q +FF +AG KL++RIRS+ FEKVVH E+ WFD+P
Sbjct: 756 KEDTSFWAIIFMVLGFASIIAYPAQTFFFAIAGCKLVQRIRSMCFEKVVHMEVGWFDEPE 815
Query: 814 NSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLM 873
NSSG++GARLS DA+TIR LVGDSLA VQN+++I AGLIIAF A W LAFV+LA+ PL+
Sbjct: 816 NSSGTIGARLSADAATIRGLVGDSLAQTVQNLSSILAGLIIAFLACWQLAFVVLAMLPLI 875
Query: 874 LVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPL 933
+ G+ KFMKGFSADAK MY EASQVANDAVGSIRTVASFC+E+KVM++Y KKCEGP+
Sbjct: 876 ALNGFLYMKFMKGFSADAKKMYGEASQVANDAVGSIRTVASFCAEDKVMNMYSKKCEGPM 935
Query: 934 KNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGV 993
KNG+R+GI+SG GFGFSF VL+ + A FY+G+ LV+ GK TF VF+VFFALT++A+ +
Sbjct: 936 KNGIRQGIVSGIGFGFSFFVLFSSYAASFYVGARLVDDGKTTFDSVFRVFFALTMAAMAI 995
Query: 994 SQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRP 1053
SQ+S+++PD++KA +AASIF I+D + KID S + G L +V G IELR VSFKYP RP
Sbjct: 996 SQSSSLSPDSSKADVAAASIFAIMDRESKIDPSVESGRVLDNVKGDIELRHVSFKYPARP 1055
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW 1113
DVQIF++LCLSI +GKTVALVGESGSGKSTVIAL++RFYDPDSG + LD +E+ +L W
Sbjct: 1056 DVQIFQDLCLSIRAGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGVEIKSLRLKW 1115
Query: 1114 LRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNV 1173
LRQQ GLVSQEP+LFNETIR NIAYGK G SNAH FIS L GY+T V
Sbjct: 1116 LRQQTGLVSQEPILFNETIRANIAYGKGGDASESEIVSSAELSNAHGFISGLQQGYDTMV 1175
Query: 1174 GERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVV 1233
GERG+QLSGGQKQR+AIARA++K+PK+LLLDEATSALDAESERVVQDAL+RVMVNRTT+V
Sbjct: 1176 GERGIQLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTIV 1235
Query: 1234 VAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVSSS 1283
VAHRL+TIKNAD+IAVVKNGVI E+G HD L+ I DG YASLV LH++++
Sbjct: 1236 VAHRLSTIKNADVIAVVKNGVIVEKGKHDTLINIKDGVYASLVQLHLTAA 1285
|
|
| TAIR|locus:2196145 ABCB11 "ATP-binding cassette B11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4155 (1467.7 bits), Expect = 0., P = 0.
Identities = 804/1251 (64%), Positives = 999/1251 (79%)
Query: 36 VPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSH-VVHEVS 94
VPFYKLFAFAD D +LMI G+I AIG+G++ PFMTL+FG LI+SFG + + +V VS
Sbjct: 41 VPFYKLFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLFGDLIDSFGKNQNNKDIVDVVS 100
Query: 95 KVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEV 154
KV +KF+YL GT AAFLQV+CWM+TGERQA RIR YLKTILRQDIGFFD ET TGEV
Sbjct: 101 KVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSTYLKTILRQDIGFFDVETNTGEV 160
Query: 155 IGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGS 214
+GRMSGDT+LIQ+AMGEKVGKFIQL+STF GGFV+A +GW L LV+L +P + +AG +
Sbjct: 161 VGRMSGDTVLIQDAMGEKVGKFIQLVSTFVGGFVLAFIKGWLLTLVMLTSIPLLAMAGAA 220
Query: 215 MALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQ 274
MALI+++ SSRGQ AY++A TVVEQT+ IRTV+SFTGEKQAI Y + AY++++QQ
Sbjct: 221 MALIVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSYKKFITSAYKSSIQQ 280
Query: 275 GMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPC 334
G +G+GLGV+ +Y LA+W+G K+I+EKGY GG VINVI+ ++ G MSLGQTSPC
Sbjct: 281 GFSTGLGLGVMFFVFFSSYALAIWFGGKMILEKGYTGGAVINVIIIVVAGSMSLGQTSPC 340
Query: 335 LNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFA 394
+ AFA GQAAAYKMFETIKRKP ID YD +G LE I G+IEL+DV+F YPARP+ +IF
Sbjct: 341 VTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLEDIRGDIELKDVHFSYPARPDEEIFD 400
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454
GFSL +PSG TAALVG+SGSGKSTVISL+ERFYDP +G VLIDG+++K+ QLKWIR KIG
Sbjct: 401 GFSLFIPSGATAALVGESGSGKSTVISLIERFYDPKSGAVLIDGVNLKEFQLKWIRSKIG 460
Query: 455 LVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQL 514
LVSQEP+LF++S+ ENIAYGKENAT +EI+ A ELANAAKFIDKLP+GLDTM GEHGTQL
Sbjct: 461 LVSQEPVLFSSSIMENIAYGKENATVEEIKAATELANAAKFIDKLPQGLDTMVGEHGTQL 520
Query: 515 SGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTT 574
SGGQKQRIAIARAILK+P+ILLLDEATSALDAESER+VQ+AL ++M +RTTV+VAHRL+T
Sbjct: 521 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMVNRTTVIVAHRLST 580
Query: 575 IRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSSF 634
+RNAD+IAV+H+GK+VEKG+H EL+KD EG Y+QL+RLQE +K+ + + + +S
Sbjct: 581 VRNADMIAVIHRGKMVEKGSHSELLKDSEGAYSQLIRLQEINKDVKTSELSSGSSFRNSN 640
Query: 635 DILDKAMTXXXXXXXXXXXXXXXXXXXXXXXFGFTYGVPGPINVFETEEGDQGGAERTPL 694
L K+M G T G+ + + + G A + PL
Sbjct: 641 --LKKSMEGTSSVGNSSRHHSLNV-------LGLTTGLDLGSHSQRAGQDETGTASQEPL 691
Query: 695 MIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLR 754
K+S+ R+A LNKPE PVLL+G++AA I+G IFP+FG+L+S I FF+P +L+
Sbjct: 692 -----PKVSLTRIAALNKPEIPVLLLGTVAAAINGAIFPLFGILISRVIEAFFKPAHELK 746
Query: 755 KDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPAN 814
+DSRFWA+I++ LG+ +LI P Q Y F VAGGKLIRRIRS+ FEK VH E++WFD+P N
Sbjct: 747 RDSRFWAIIFVALGVTSLIVSPTQMYLFAVAGGKLIRRIRSMCFEKAVHMEVAWFDEPQN 806
Query: 815 SSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLML 874
SSG++GARLS DA+ IR+LVGD+L+L VQN+A+ A+GLIIAFTA+W LA +IL + PL+
Sbjct: 807 SSGTMGARLSADATLIRALVGDALSLAVQNVASAASGLIIAFTASWELALIILVMLPLIG 866
Query: 875 VQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLK 934
+ G+ Q KFMKGFSADAK YEEASQVANDAVGSIRTVASFC+EEKVM +Y+K+CEGP+K
Sbjct: 867 INGFVQVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFCAEEKVMQMYKKQCEGPIK 926
Query: 935 NGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVS 994
+G+++G +SG GFGFSF +L+C A FY G+ LVE GK TF VF+VFFALT++A+G+S
Sbjct: 927 DGIKQGFISGLGFGFSFFILFCVYATSFYAGARLVEDGKTTFNNVFQVFFALTMAAIGIS 986
Query: 995 QTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPD 1054
Q+S APD++KAK +AASIF I+D K KIDSS + G L +V G IELR +SF YP RPD
Sbjct: 987 QSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENVKGDIELRHLSFTYPARPD 1046
Query: 1055 VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWL 1114
+QIFR+LCL+I +GKTVALVGESGSGKSTVI+L++RFYDPDSGH+ LD +EL K +L WL
Sbjct: 1047 IQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKLQLKWL 1106
Query: 1115 RQQMGLVSQEPVLFNETIRTNIAYGK--QGGXXXXXXXXXXXXSNAHNFISALPHGYETN 1172
RQQMGLV QEPVLFN+TIR NIAYGK + +NAH FIS++ GY+T
Sbjct: 1107 RQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELANAHKFISSIQQGYDTV 1166
Query: 1173 VGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTV 1232
VGERG+QLSGGQKQR+AIARA++K PKILLLDEATSALDAESERVVQDAL+RVMVNRTT+
Sbjct: 1167 VGERGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTI 1226
Query: 1233 VVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVSSS 1283
VVAHRL+TIKNAD+IAVVKNGVIAE+G+H+ L+KI G YASLV LH+++S
Sbjct: 1227 VVAHRLSTIKNADVIAVVKNGVIAEKGTHETLIKIEGGVYASLVQLHMTAS 1277
|
|
| TAIR|locus:2196135 ABCB12 "ATP-binding cassette B12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4047 (1429.7 bits), Expect = 0., P = 0.
Identities = 790/1254 (62%), Positives = 986/1254 (78%)
Query: 36 VPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSH-VVHEVS 94
VP YKLFAFAD D LMI G++ AIG+G+ P MTL+FG LI+SFG + + +V VS
Sbjct: 28 VPLYKLFAFADSFDVFLMICGSLGAIGNGVCLPLMTLLFGDLIDSFGKNQNNKDIVDVVS 87
Query: 95 KVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEV 154
KV +KF+YL G AAFLQV+CWM+TGERQA +IR YLKTILRQDIGFFD ET TGEV
Sbjct: 88 KVCLKFVYLGLGRLGAAFLQVACWMITGERQAAKIRSNYLKTILRQDIGFFDVETNTGEV 147
Query: 155 IGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGS 214
+GRMSGDT+ IQ+AMGEKVGKFIQL+STF GGF +A A+GW L LV+L +P + +AG +
Sbjct: 148 VGRMSGDTVHIQDAMGEKVGKFIQLVSTFVGGFALAFAKGWLLTLVMLTSIPFLAMAGAA 207
Query: 215 MALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQ 274
MAL++++ SSRGQ AY++A TVVEQT+ IRTV+SFTGEKQAI Y + AY++++QQ
Sbjct: 208 MALLVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSYKKYITSAYKSSIQQ 267
Query: 275 GMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPC 334
G +G+GLGV++ +Y LA+W+G K+I+EKGY GG+VINVI+ ++ G MSLGQTSPC
Sbjct: 268 GFSTGLGLGVMIYVFFSSYALAIWFGGKMILEKGYTGGSVINVIIIVVAGSMSLGQTSPC 327
Query: 335 LNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFA 394
+ AFA GQAAAYKMFETIKRKP ID YD +G L I G+IEL+DV+F YPARP+ +IF
Sbjct: 328 VTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLGDIRGDIELKDVHFSYPARPDEEIFD 387
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454
GFSL +PSG TAALVG+SGSGKSTVI+L+ERFYDP AGEVLIDGI++K+ QLKWIR KIG
Sbjct: 388 GFSLFIPSGATAALVGESGSGKSTVINLIERFYDPKAGEVLIDGINLKEFQLKWIRSKIG 447
Query: 455 LVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQL 514
LV QEP+LF++S+ ENIAYGKENAT QEI+ A ELANAAKFI+ LP+GLDT GEHGTQL
Sbjct: 448 LVCQEPVLFSSSIMENIAYGKENATLQEIKVATELANAAKFINNLPQGLDTKVGEHGTQL 507
Query: 515 SGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTT 574
SGGQKQRIAIARAILK+P++LLLDEATSALD ESER+VQ+AL ++M +RTTVVVAHRL+T
Sbjct: 508 SGGQKQRIAIARAILKDPRVLLLDEATSALDTESERVVQEALDRVMVNRTTVVVAHRLST 567
Query: 575 IRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSK--EAEDA-LATDADKLD 631
+RNAD+IAV+H GK+VEKG+H EL+KD G Y+QL+R QE +K +A+ + +A+ + +
Sbjct: 568 VRNADMIAVIHSGKMVEKGSHSELLKDSVGAYSQLIRCQEINKGHDAKPSDMASGSSFRN 627
Query: 632 SSFDILDKAMTXXXXXXXXXXXXXXXXXXXXXXXFGFTYGVPGPINVFETEEGDQGGAER 691
S+ +I + G G G V + E G +
Sbjct: 628 SNLNISREGSVISGGTSSFGNSSRHHSLNVLGLFAGLDLG-SGSQRVGQEETGT---TSQ 683
Query: 692 TPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPED 751
PL +K+S+ R+A LNKPE PVLL+G++ A I+G IFP+FG+L+S I FF+P D
Sbjct: 684 EPL-----RKVSLTRIAALNKPEIPVLLLGTVVAAINGAIFPLFGILISRVIEAFFKPAD 738
Query: 752 KLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDD 811
+L+KDSRFWA+I++ LG+ +LI P Q Y F VAGGKLIRRI+S+ FEK VH E+SWFD+
Sbjct: 739 QLKKDSRFWAIIFVALGVTSLIVSPSQMYLFAVAGGKLIRRIQSMCFEKAVHMEVSWFDE 798
Query: 812 PANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSP 871
P NSSG++GARLSTDA+ IR+LVGD+L+L VQN A+ A+GLIIAFTA+W LA +IL + P
Sbjct: 799 PENSSGTMGARLSTDAALIRALVGDALSLAVQNAASAASGLIIAFTASWELALIILVMLP 858
Query: 872 LMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEG 931
L+ + G+ Q KFMKGFSADAK YEEASQVANDAVGSIRTVASFC+EEKVM +Y K+CEG
Sbjct: 859 LIGINGFLQVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFCAEEKVMQMYNKQCEG 918
Query: 932 PLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISAL 991
P+K+GV++G +SG GFGFSF +L+C A FY + LVE GK TF VF+VFFALT++A+
Sbjct: 919 PIKDGVKQGFISGLGFGFSFFILFCVYATSFYAAARLVEDGKTTFIDVFQVFFALTMAAI 978
Query: 992 GVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPT 1051
G+SQ+S APD++KAK +AASIF I+D K KIDSS + G L +V G IELR +SF YP
Sbjct: 979 GISQSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENVKGDIELRHLSFTYPA 1038
Query: 1052 RPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKL 1111
RP +QIFR+LCL+I +GKTVALVGESGSGKSTVI+L++RFYDPDSG + LD +EL K +L
Sbjct: 1039 RPGIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSGQITLDGVELKKLQL 1098
Query: 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGK--QGGXXXXXXXXXXXXSNAHNFISALPHGY 1169
WLRQQMGLV QEPVLFN+TIR NIAYGK + +NAH FIS++ GY
Sbjct: 1099 KWLRQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELANAHKFISSIQQGY 1158
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR 1229
+T VGE+G+QLSGGQKQR+AIARA++K PKILLLDEATSALDAESER+VQDAL+RV+VNR
Sbjct: 1159 DTVVGEKGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESERLVQDALDRVIVNR 1218
Query: 1230 TTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVSSS 1283
TTVVVAHRL+TIKNAD+IA+VKNGVIAE G+H+ L+KI G YASLV LH+++S
Sbjct: 1219 TTVVVAHRLSTIKNADVIAIVKNGVIAENGTHETLIKIDGGVYASLVQLHMTAS 1272
|
|
| TAIR|locus:2151496 ABCB7 "ATP-binding cassette B7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2277 (806.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 439/603 (72%), Positives = 518/603 (85%)
Query: 34 QKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEV 93
Q++ FYKLF FAD+ D VLM++GT+SA+ +GL PFM+++ G LIN FG SD HV EV
Sbjct: 16 QRIAFYKLFTFADRYDIVLMVIGTLSAMANGLTQPFMSILMGQLINVFGFSDHDHVFKEV 75
Query: 94 SKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGE 153
SKVAVKFLYLAA G+ +FLQVSCWMVTGERQ+TRIR LYLKTILRQDIGFFDTET TGE
Sbjct: 76 SKVAVKFLYLAAYAGVVSFLQVSCWMVTGERQSTRIRRLYLKTILRQDIGFFDTETNTGE 135
Query: 154 VIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGG 213
VIGRMSGDTILIQ++MGEKVGKF QL+S+F GGF VA G L L LL C+P IV GG
Sbjct: 136 VIGRMSGDTILIQDSMGEKVGKFTQLVSSFVGGFTVAFIVGMKLTLALLPCVPLIVGTGG 195
Query: 214 SMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQ 273
+M IMSK + R Q+AY+EAG VV+Q V IRTV +FTGEKQ++ KY KL++AY++ V+
Sbjct: 196 AMTYIMSKKAQRVQLAYTEAGNVVQQAVGSIRTVVAFTGEKQSMGKYEKKLEIAYKSMVK 255
Query: 274 QGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSP 333
QG+ SG+G+G++M+ V TYG A+WYG++ IIEKGY GG V+NVI +I+TGGM+LGQT P
Sbjct: 256 QGLYSGLGIGIMMVVVYCTYGFAIWYGARQIIEKGYTGGQVMNVITSILTGGMALGQTLP 315
Query: 334 CLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIF 393
LN+FA G AAAYKMFETIKRKPKID YD SG LE+I+G+IELRDVYFRYPARP+VQIF
Sbjct: 316 SLNSFAAGTAAAYKMFETIKRKPKIDAYDMSGEVLEEIKGDIELRDVYFRYPARPDVQIF 375
Query: 394 AGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453
GFSL VP+G T ALVGQSGSGKSTVISL+ERFYDP++GEVLIDGID+KK Q+KWIR KI
Sbjct: 376 VGFSLTVPNGMTVALVGQSGSGKSTVISLIERFYDPESGEVLIDGIDLKKFQVKWIRSKI 435
Query: 454 GLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQ 513
GLVSQEPILFAT++RENI YGK++A+DQEIRTA++LANA+ FIDKLP+GL+TM GEHGTQ
Sbjct: 436 GLVSQEPILFATTIRENIVYGKKDASDQEIRTALKLANASNFIDKLPQGLETMVGEHGTQ 495
Query: 514 LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLT 573
LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVK+M SRTTVVVAHRLT
Sbjct: 496 LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKLMLSRTTVVVAHRLT 555
Query: 574 TIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSS 633
TIR AD+IAVV QGK++EKGTHDE+IKDPEG Y+QLVRLQEGSK+ E+A+ + +K + S
Sbjct: 556 TIRTADMIAVVQQGKVIEKGTHDEMIKDPEGTYSQLVRLQEGSKK-EEAIDKEPEKCEMS 614
Query: 634 FDI 636
+I
Sbjct: 615 LEI 617
|
|
| TAIR|locus:2141350 ABCB3 "ATP-binding cassette B3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2050 (726.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 392/607 (64%), Positives = 497/607 (81%)
Query: 36 VPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSH-VVHEVS 94
VPFYKLF+F+D D +LMIVG+I AIG+G+ P MTL+FG LI+S G + + +V VS
Sbjct: 8 VPFYKLFSFSDSTDVLLMIVGSIGAIGNGVGFPLMTLLFGDLIDSIGQNQSNKDIVEIVS 67
Query: 95 KVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEV 154
KV +KF+YL GT AAFLQV+CWM+TGERQA RIR LYLKTILRQDIGFFD ET+TGEV
Sbjct: 68 KVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSLYLKTILRQDIGFFDVETSTGEV 127
Query: 155 IGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGS 214
+GRMSGDT+LI EAMGEKVGKFIQL++TF GGFV+A +GW L LV+L +P + IAG +
Sbjct: 128 VGRMSGDTVLILEAMGEKVGKFIQLIATFVGGFVLAFVKGWLLTLVMLVSIPLLAIAGAA 187
Query: 215 MALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQ 274
M +I+++ SSR Q AY++A TVVEQT+ IRTV+SFTGEKQA++ Y + +AYRA+V+Q
Sbjct: 188 MPIIVTRASSREQAAYAKASTVVEQTLGSIRTVASFTGEKQAMKSYREFINLAYRASVKQ 247
Query: 275 GMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPC 334
G G+GLGV+ +Y LA+W+G ++I++KGY GG V+NV++ ++ MSLGQT+PC
Sbjct: 248 GFSMGLGLGVVFFVFFCSYALAIWFGGEMILKKGYTGGEVVNVMVTVVASSMSLGQTTPC 307
Query: 335 LNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFA 394
L AFA G+AAAYKMFETI+RKP ID +D +G LE I GEIELRDV F YPARP ++F
Sbjct: 308 LTAFAAGKAAAYKMFETIERKPSIDAFDLNGKVLEDIRGEIELRDVCFSYPARPMEEVFG 367
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454
GFSL +PSG TAALVG+SGSGKS+VISL+ERFYDP +G VLIDG+++K+ QLKWIR KIG
Sbjct: 368 GFSLLIPSGATAALVGESGSGKSSVISLIERFYDPSSGSVLIDGVNLKEFQLKWIRGKIG 427
Query: 455 LVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQL 514
LVSQEP+LF++S+ ENI YGKENAT +EI+ A +LANAA FIDKLP+GL+T+ GEHGTQL
Sbjct: 428 LVSQEPVLFSSSIMENIGYGKENATVEEIQAAAKLANAANFIDKLPRGLETLVGEHGTQL 487
Query: 515 SGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTT 574
SGGQKQRIAIARAILK+P+ILLLDEATSALDAESER+VQ+AL ++M SRTTV+VAHRL+T
Sbjct: 488 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMMSRTTVIVAHRLST 547
Query: 575 IRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSSF 634
+RNAD+IAV+H+GKIVE+G+H EL+KD EG Y QL+RLQ+ KE + +L+SS
Sbjct: 548 VRNADMIAVIHRGKIVEEGSHSELLKDHEGAYAQLIRLQKIKKEPK--------RLESSN 599
Query: 635 DILDKAM 641
++ D+++
Sbjct: 600 ELRDRSI 606
|
|
| TAIR|locus:2141365 ABCB5 "ATP-binding cassette B5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2016 (714.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 380/586 (64%), Positives = 482/586 (82%)
Query: 36 VPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFG-SSDRSHVVHEVS 94
VPFYKLF F+D D +LMIVG+I AI +G+ P MTL+FG LI++ G + + +V VS
Sbjct: 13 VPFYKLFFFSDSTDVLLMIVGSIGAIANGVCSPLMTLLFGELIDAMGPNQNNEEIVERVS 72
Query: 95 KVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEV 154
KV + +YL G AAFLQV+CWM+TGERQA RIR LYLKTILRQDIGFFD E TTGEV
Sbjct: 73 KVCLSLVYLGLGALGAAFLQVACWMITGERQAARIRSLYLKTILRQDIGFFDVEMTTGEV 132
Query: 155 IGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGS 214
+GRMSGDT+LI +AMGEKVGKFIQL+STF GGFV+A RGW L LV+L +P + ++G +
Sbjct: 133 VGRMSGDTVLILDAMGEKVGKFIQLISTFVGGFVIAFLRGWLLTLVMLTSIPLLAMSGAA 192
Query: 215 MALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQ 274
+A+I+++ SS+ Q AY++A VVEQT+ IRTV+SFTGEKQA+ Y + +AY++ V+Q
Sbjct: 193 IAIIVTRASSQEQAAYAKASNVVEQTLGSIRTVASFTGEKQAMSSYKELINLAYKSNVKQ 252
Query: 275 GMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPC 334
G V+G+GLGV+ L TY L W+G ++I+ KGY GG VINV++ +++ ++LGQ SPC
Sbjct: 253 GFVTGLGLGVMFLVFFSTYALGTWFGGEMILRKGYTGGAVINVMVTVVSSSIALGQASPC 312
Query: 335 LNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFA 394
L AF G+AAAYKMFETI+R+P ID +D +G LE I GEIELRDV F YPARP+ ++F
Sbjct: 313 LTAFTAGKAAAYKMFETIEREPLIDTFDLNGKVLEDIRGEIELRDVCFSYPARPKEEVFG 372
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454
GFSL +PSGTT ALVG+SGSGKSTVISL+ERFYDP++G+VLIDG+D+K+ QLKWIR KIG
Sbjct: 373 GFSLLIPSGTTTALVGESGSGKSTVISLIERFYDPNSGQVLIDGVDLKEFQLKWIRGKIG 432
Query: 455 LVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQL 514
LVSQEP+LF++S+ ENI YGKE AT +EI+ A +LANAAKFIDKLP GL+T+ GEHGTQL
Sbjct: 433 LVSQEPVLFSSSIMENIGYGKEGATVEEIQAASKLANAAKFIDKLPLGLETLVGEHGTQL 492
Query: 515 SGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTT 574
SGGQKQRIAIARAILK+P+ILLLDEATSALDAESER+VQ+AL +IM +RTTV+VAHRL+T
Sbjct: 493 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVIVAHRLST 552
Query: 575 IRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAE 620
+RNAD+IAV+H+GKIVE+G+H EL+KD EG Y+QL+RLQE +KE++
Sbjct: 553 VRNADIIAVIHRGKIVEEGSHSELLKDHEGAYSQLLRLQEINKESK 598
|
|
| TAIR|locus:2117656 ABCB9 "ATP-binding cassette B9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2820 (997.7 bits), Expect = 1.1e-293, P = 1.1e-293
Identities = 556/829 (67%), Positives = 668/829 (80%)
Query: 34 QKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEV 93
QKV F+KLF+FADK D VLM VGTI+A G+GL PFMTLIFG LIN+FG++D H+V EV
Sbjct: 14 QKVSFFKLFSFADKTDVVLMTVGTIAAAGNGLTQPFMTLIFGQLINAFGTTDPDHMVREV 73
Query: 94 SKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGE 153
KVAVKF+YLA + + AFLQVSCWMVTGERQ+ IRGLYLKTILRQDIG+FDTET TGE
Sbjct: 74 WKVAVKFIYLAVYSCVVAFLQVSCWMVTGERQSATIRGLYLKTILRQDIGYFDTETNTGE 133
Query: 154 VIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGG 213
VIGRMSGDTILIQ+AMGEKVGKF QL+ TF GGF +A +G LA VL +C+P IVIAG
Sbjct: 134 VIGRMSGDTILIQDAMGEKVGKFTQLLCTFLGGFAIAFYKGPLLAGVLCSCIPLIVIAGA 193
Query: 214 SMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQ 273
+M+LIMSKM+ RGQ+AY+EAG VVEQTV IRTV +FTGEKQA EKY +KL++AY+ VQ
Sbjct: 194 AMSLIMSKMAGRGQVAYAEAGNVVEQTVGAIRTVVAFTGEKQATEKYESKLEIAYKTVVQ 253
Query: 274 QGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSP 333
QG++SG GLG ++ + +YGLAVWYG+KLI+EKGYNGG VINVI A++TGGMSLGQTSP
Sbjct: 254 QGLISGFGLGTMLAVIFCSYGLAVWYGAKLIMEKGYNGGQVINVIFAVLTGGMSLGQTSP 313
Query: 334 CLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIF 393
LNAFA G+AAA+KMFETIKR PKID YD SG LE I G+IEL+DVYFRYPARP+VQIF
Sbjct: 314 SLNAFAAGRAAAFKMFETIKRSPKIDAYDMSGSVLEDIRGDIELKDVYFRYPARPDVQIF 373
Query: 394 AGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453
AGFSL VP+G T ALVGQSGSGKSTVISL+ERFYDP++G+VLID ID+KKLQLKWIR KI
Sbjct: 374 AGFSLFVPNGKTVALVGQSGSGKSTVISLIERFYDPESGQVLIDNIDLKKLQLKWIRSKI 433
Query: 454 GLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQ 513
GLVSQEP+LFAT+++ENIAYGKE+ATDQEIRTAIELANAAKFIDKLP+GLDTM GEHGTQ
Sbjct: 434 GLVSQEPVLFATTIKENIAYGKEDATDQEIRTAIELANAAKFIDKLPQGLDTMVGEHGTQ 493
Query: 514 LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLT 573
+SGGQKQR+AIARAILKNPKILLLDEATSALDAESERIVQDALV +M++RTTVVVAHRLT
Sbjct: 494 MSGGQKQRLAIARAILKNPKILLLDEATSALDAESERIVQDALVNLMSNRTTVVVAHRLT 553
Query: 574 TIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSS 633
TIR AD+IAVVHQGKIVEKGTHDE+I+DPEG Y+QLVRLQEGSKE AT++++ ++S
Sbjct: 554 TIRTADVIAVVHQGKIVEKGTHDEMIQDPEGAYSQLVRLQEGSKEE----ATESERPETS 609
Query: 634 FDILDKAMTXXXXXXXXXXXXXXXXXXXXXXXFGFTYGVPGPINVFETEEGDQGGAERTP 693
D+ +++ + PG +NV +T+E + E
Sbjct: 610 LDV-ERSGSLRLSSAMRRSVSRNSSSSRHSFSLASNMFFPG-VNVNQTDEMED---EENN 664
Query: 694 LMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKL 753
+ + +K+S++RLA+LNKPE PVL++GSIAA +HG +FPIFGLLLSSSI MF+EP L
Sbjct: 665 V---RHKKVSLKRLAHLNKPEIPVLVLGSIAAMVHGTVFPIFGLLLSSSINMFYEPAKIL 721
Query: 754 RKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPA 813
+KDS FWALIY+ LG+ N + +P QNYFFG+AGGKLI+RIRS+ F+KVVHQEISWFDD A
Sbjct: 722 KKDSHFWALIYIALGLTNFVMIPVQNYFFGIAGGKLIKRIRSMCFDKVVHQEISWFDDTA 781
Query: 814 NSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWIL 862
NS VG L A ++++ + L++ A LI+ + +I+
Sbjct: 782 NSRSLVGDAL---ALIVQNIATVTTGLIIAFTANWILALIVLALSPFIV 827
|
|
| TAIR|locus:2090734 ABCB19 "ATP-binding cassette B19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1502 (533.8 bits), Expect = 4.1e-283, Sum P(2) = 4.1e-283
Identities = 293/585 (50%), Positives = 402/585 (68%)
Query: 34 QKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSS--DRSHVVH 91
Q +PF+KLF+FADK D +LM VG++ AI G + P L+FG ++N FG + D +VH
Sbjct: 22 QSLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDLHQMVH 81
Query: 92 EVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTT 151
EVS+ ++ F+YL +++ +++CWM +GERQ +R YL+ +L+QD+GFFDT+ T
Sbjct: 82 EVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVLKQDVGFFDTDART 141
Query: 152 GEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIA 211
G+++ +S DT+L+Q+A+ EKVG FI +STF G VV W LAL+ +A +P I A
Sbjct: 142 GDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIPGIAFA 201
Query: 212 GGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAA 271
GG A ++ ++S+ + +Y+ AG + EQ ++ +RTV S+ GE +A+ Y++ +Q +
Sbjct: 202 GGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAYSDAIQYTLKLG 261
Query: 272 VQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQT 331
+ GM G+GLG ++ L WY I +GG I + + GGMSLGQ+
Sbjct: 262 YKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQS 321
Query: 332 SPCLNAFAGGQAAAYKMFETIKRKPKI--DPYDTSGITLEKIEGEIELRDVYFRYPARPE 389
L AF+ G+AA YK+ E I ++P I DP D G L+++ G IE +DV F YP+RP+
Sbjct: 322 FSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLD--GKCLDQVHGNIEFKDVTFSYPSRPD 379
Query: 390 VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWI 449
V IF F++ PSG T A+VG SGSGKSTV+SL+ERFYDP++G++L+DG++IK LQLK++
Sbjct: 380 VMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQLKFL 439
Query: 450 REKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGE 509
RE+IGLV+QEP LFAT++ ENI YGK +AT E+ A ANA FI LPKG DT GE
Sbjct: 440 REQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGE 499
Query: 510 HGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVA 569
G QLSGGQKQRIAIARA+LK+PKILLLDEATSALDA SE IVQ+AL ++M RTTVVVA
Sbjct: 500 RGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVA 559
Query: 570 HRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQE 614
HRL TIRN D IAV+ QG++VE GTH+ELI G Y L+R QE
Sbjct: 560 HRLCTIRNVDSIAVIQQGQVVETGTHEELIAK-SGAYASLIRFQE 603
|
|
| UNIPROTKB|Q0JCP1 Os04g0459000 "Os04g0459000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1477 (525.0 bits), Expect = 1.8e-282, Sum P(2) = 1.8e-282
Identities = 293/592 (49%), Positives = 399/592 (67%)
Query: 34 QKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRS--HVVH 91
Q V F++LF FAD D +LM G+ A+ G A P L+FG LIN FG + S +
Sbjct: 27 QSVAFHELFGFADPLDWLLMAAGSAGAVVHGAAMPVFFLLFGELINGFGKNQHSLRRMTD 86
Query: 92 EVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTT 151
EVSK ++ F+YL +++L+++CWM TGERQ +R YL+ +LRQD+GFFDT+ T
Sbjct: 87 EVSKYSLYFVYLGLVVCASSYLEIACWMYTGERQVGALRRRYLEAVLRQDVGFFDTDART 146
Query: 152 GEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIA 211
G+V+ +S DT+L+Q+A+GEKVG FI +STF G VV W LAL+ +A +P I A
Sbjct: 147 GDVVFSVSTDTLLVQDAIGEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFA 206
Query: 212 GGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAA 271
GG A ++ ++S+ + +Y+ AG + EQ ++ +RTV S+ GE +A+ Y+ +Q +
Sbjct: 207 GGLYAYTLTGLTSKSRDSYANAGIIAEQAIAQVRTVYSYVGESKALNSYSEAIQNTLKLG 266
Query: 272 VQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQT 331
+ GM G+G+G ++ L WY I +GG I + + GG+SLGQ+
Sbjct: 267 YKAGMAKGLGIGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGLSLGQS 326
Query: 332 SPCLNAFAGGQAAAYKMFETIKRKPKI--DPYDTSGITLEKIEGEIELRDVYFRYPARPE 389
L AF+ G+ A YK+ E I+++P I DP D G L+++ G IE ++V F YP+RP+
Sbjct: 327 FSNLGAFSKGKIAGYKLLEVIRQRPTIVQDPAD--GRCLDEVHGNIEFKEVAFSYPSRPD 384
Query: 390 VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWI 449
V IF FSL P+G TAA+VG SGSGKSTV++L+ERFYDP+ G+VL+D +DIK LQLKW+
Sbjct: 385 VMIFRDFSLFFPAGKTAAVVGGSGSGKSTVVALIERFYDPNQGQVLLDNVDIKTLQLKWL 444
Query: 450 REKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGE 509
R++IGLV+QEP LFAT++ ENI YGK +AT E+ A ANA FI LP G +T GE
Sbjct: 445 RDQIGLVNQEPALFATTILENILYGKPDATMAEVEAAATSANAHSFIALLPNGYNTQVGE 504
Query: 510 HGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVA 569
G QLSGGQKQRIAIARA+LKNPKILLLDEATSALDA SE IVQ+AL ++M RTTVVVA
Sbjct: 505 RGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEALDRLMVGRTTVVVA 564
Query: 570 HRLTTIRNADLIAVVHQGKIVEKGTHDELI-KDPEGPYTQLVRLQEGSKEAE 620
HRL+TIR D+IAV+ QG++VE GTHDEL+ K G Y L+R QE ++ +
Sbjct: 565 HRLSTIRCVDMIAVIQQGQVVETGTHDELLAKGSSGAYAALIRFQEMARNRD 616
|
|
| DICTYBASE|DDB_G0291714 abcB3 "ABC transporter B family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1497 (532.0 bits), Expect = 1.5e-281, Sum P(3) = 1.5e-281
Identities = 296/593 (49%), Positives = 410/593 (69%)
Query: 34 QKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFG----SSDRSHV 89
Q VPF LF FAD D VLM +GTI+A+ +G A P ++L+FG ++++F + D ++
Sbjct: 161 QSVPFLSLFRFADNTDKVLMFLGTIAAVINGAAMPTVSLVFGLVVDAFKPTQFNDDPNYD 220
Query: 90 VHE-VSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTE 148
+++ V ++ L L G + ++L+ + WM+ GERQ +RIR YL++ LRQ+IG+FDT
Sbjct: 221 IYDTVRSISFYLLMLGGGVFVLSYLETTLWMIAGERQTSRIRREYLESTLRQEIGWFDTN 280
Query: 149 TTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAI 208
E+ R++ DT+L +EA+GEKVG+FI STF GFV+ +GW L LV+ + P +
Sbjct: 281 KAN-ELSSRINSDTVLFEEAIGEKVGRFIHFFSTFVAGFVIGFTKGWQLTLVITSVSPLL 339
Query: 209 VIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAY 268
I G A +M++M+ GQ AYS AG V E+ + IRTV++F+GEK AI+KY+N L+ A
Sbjct: 340 AIGGFFTAKMMTQMTKLGQEAYSRAGGVAEENIGSIRTVATFSGEKLAIDKYSNNLKDAR 399
Query: 269 RAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYN--------GGTVINVIMA 320
++ +G+GLG + ++GTY LA WYGS LI K N GG V++V A
Sbjct: 400 TVGYKRSFFNGLGLGFVQFVILGTYALAFWYGSTLISNKVTNSVSDRPWTGGDVVSVFFA 459
Query: 321 IMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDV 380
++ G S+GQ SPCL FA G+ AAYK+F+ I R+ K +P+ T GI E + GEIE +DV
Sbjct: 460 VIIGATSIGQASPCLALFAQGRGAAYKIFQVIDRQSKANPFSTRGIKPETLSGEIEFKDV 519
Query: 381 YFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGID 440
F YP+RP+V IF GF+L + G T LVG SG GKST+ISL+ERFYDP GE+L+DG D
Sbjct: 520 GFHYPSRPDVPIFNGFNLKIKPGQTVGLVGDSGGGKSTIISLLERFYDPCQGEILLDGED 579
Query: 441 IKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLP 500
I+K ++ +R+KIGLV+QEP+LFAT++ ENI YGKE AT EI A +LANA FI +LP
Sbjct: 580 IRKFNVRGLRQKIGLVNQEPVLFATTISENIRYGKEGATQDEIEEAAKLANAHSFISQLP 639
Query: 501 KGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM 560
+G +T+ GE G Q+SGGQ+QRIAIARA++KNP ILLLDE+TSALDAES ++VQ+AL +M
Sbjct: 640 QGYNTLVGEKGVQMSGGQRQRIAIARAVIKNPNILLLDESTSALDAESTKLVQEALDVLM 699
Query: 561 TSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
RTT+V+AH L+TIRNAD+I + +G VE+GTHDEL+ +G Y LV Q
Sbjct: 700 KGRTTIVIAHNLSTIRNADVIIYIKKGVAVERGTHDELMAK-QGLYFDLVEKQ 751
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P36619 | PMD1_SCHPO | No assigned EC number | 0.3798 | 0.9540 | 0.8986 | yes | no |
| P21448 | MDR1_CRIGR | 3, ., 6, ., 3, ., 4, 4 | 0.4118 | 0.9493 | 0.9545 | yes | no |
| P08183 | MDR1_HUMAN | 3, ., 6, ., 3, ., 4, 4 | 0.4203 | 0.9485 | 0.9507 | yes | no |
| P21447 | MDR1A_MOUSE | 3, ., 6, ., 3, ., 4, 4 | 0.4185 | 0.9493 | 0.9545 | yes | no |
| Q8T9W4 | ABCB3_DICDI | No assigned EC number | 0.4316 | 0.9407 | 0.8428 | yes | no |
| Q9M0M2 | AB9B_ARATH | No assigned EC number | 0.7363 | 0.9579 | 0.9943 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1283 | |||
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-138 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-135 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-133 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-128 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-125 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-123 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-120 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-118 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-117 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-116 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-110 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-109 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-107 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-105 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-102 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-98 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 9e-97 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-96 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-95 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-94 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 6e-91 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-89 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-88 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-83 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-80 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-79 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 4e-79 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-79 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-76 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-76 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-76 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-75 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-75 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-69 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-69 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-69 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 6e-69 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-67 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-66 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-65 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-64 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 9e-64 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-63 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-63 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-63 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-62 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-62 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-62 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-62 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 7e-61 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-60 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-59 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 7e-59 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 9e-59 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 8e-58 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 3e-57 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 9e-57 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-56 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-55 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-54 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 7e-53 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 8e-53 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 9e-52 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-51 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 5e-49 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 8e-48 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-47 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-46 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-44 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-44 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-44 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-44 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 4e-44 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 8e-44 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 7e-43 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 8e-43 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-42 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-42 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-42 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 6e-42 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 8e-42 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-41 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-41 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-41 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-41 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-41 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 5e-41 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 7e-41 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 8e-41 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-40 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-40 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-40 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-40 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-40 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-40 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 9e-40 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-39 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-39 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-39 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-39 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 3e-39 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 7e-39 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-38 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-38 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-38 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 6e-38 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-38 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 9e-38 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-37 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-37 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-37 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-37 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-37 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-37 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-37 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-37 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-37 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 7e-37 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-36 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-36 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-36 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-36 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-36 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-36 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-35 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-35 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-35 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-35 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-35 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-35 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-35 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-35 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 7e-35 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 8e-35 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-34 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-34 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-34 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-34 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-34 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 4e-34 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-33 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-33 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-33 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-33 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-33 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-33 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-33 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-33 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 9e-33 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-32 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-32 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-32 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-32 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 6e-32 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 8e-32 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-31 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-31 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-31 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-31 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-31 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-31 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-31 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-31 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-31 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-31 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-31 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-31 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-31 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-31 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 8e-31 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 8e-31 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-30 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-30 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-30 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-30 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-30 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-30 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-30 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-30 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-30 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 4e-30 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-30 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-30 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-30 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 5e-30 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-30 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 7e-30 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 7e-30 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-29 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-29 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-29 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-29 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-29 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-29 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-29 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-29 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 4e-29 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 8e-29 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 9e-29 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-28 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-28 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-28 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 3e-28 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-28 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 4e-28 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-28 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-28 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-28 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 6e-28 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 7e-28 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-27 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-27 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-27 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 1e-27 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-27 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-27 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-27 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-27 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-27 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-27 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-27 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-27 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-27 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 4e-27 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-27 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 4e-27 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 4e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-27 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-27 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-27 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 6e-27 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 7e-27 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 9e-27 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-26 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-26 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-26 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-26 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-26 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-26 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-26 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-26 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-26 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-26 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-26 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-26 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-26 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-26 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-26 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-26 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-26 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 5e-26 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 6e-26 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-26 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 7e-26 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 7e-26 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 8e-26 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 8e-26 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 9e-26 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 9e-26 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-25 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-25 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-25 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-25 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-25 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-25 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-25 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-25 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-25 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-25 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-25 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-25 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 3e-25 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-25 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-25 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-25 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-25 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 6e-25 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-25 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 7e-25 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 7e-25 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 7e-25 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-24 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-24 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-24 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-24 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-24 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-24 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-24 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-24 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-24 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-24 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-24 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-24 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-24 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-24 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-24 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-24 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-24 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-24 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 5e-24 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-24 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 6e-24 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 6e-24 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-24 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 8e-24 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-23 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 1e-23 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-23 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-23 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-23 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-23 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-23 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-23 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-23 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-23 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-23 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-23 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 5e-23 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-23 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 6e-23 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 6e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 6e-23 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 8e-23 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 8e-23 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 9e-23 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 9e-23 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 9e-23 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-22 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-22 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-22 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-22 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-22 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-22 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-22 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-22 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-22 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-22 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-22 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-22 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-22 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 3e-22 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-22 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-22 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-22 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-22 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-22 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-22 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-22 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-22 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-22 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 6e-22 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 6e-22 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 7e-22 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 7e-22 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-22 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 8e-22 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 8e-22 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-21 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-21 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-21 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-21 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-21 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-21 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-21 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-21 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-21 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-21 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-21 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-21 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 4e-21 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-21 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-21 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-21 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-21 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 5e-21 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-21 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 7e-21 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 8e-21 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 9e-21 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-20 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-20 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-20 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-20 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-20 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-20 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-20 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-20 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-20 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-20 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-20 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 4e-20 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-20 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-20 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 5e-20 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-20 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-20 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 6e-20 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 6e-20 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 7e-20 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-20 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 8e-20 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-20 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 9e-20 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 9e-20 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-19 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-19 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-19 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-19 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-19 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-19 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-19 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-19 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-19 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 3e-19 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-19 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-19 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-19 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-19 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-19 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-19 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-19 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-19 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-19 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-19 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 6e-19 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 8e-19 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 8e-19 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 9e-19 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-18 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-18 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 1e-18 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-18 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-18 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-18 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-18 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-18 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-18 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-18 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 3e-18 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-18 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-18 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-18 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-18 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-18 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 4e-18 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 5e-18 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 5e-18 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-18 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 6e-18 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-18 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 7e-18 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 7e-18 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 7e-18 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 8e-18 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-18 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-17 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-17 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-17 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 1e-17 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-17 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-17 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-17 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-17 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-17 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-17 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-17 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-17 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-17 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-17 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-17 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-17 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 4e-17 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 5e-17 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 6e-17 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 6e-17 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 7e-17 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 7e-17 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 9e-17 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-16 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-16 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-16 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-16 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-16 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-16 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-16 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-16 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-16 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-16 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-16 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-16 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-16 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-16 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-16 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 5e-16 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 6e-16 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 6e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 7e-16 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 7e-16 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 7e-16 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 7e-16 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 7e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-16 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-15 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-15 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-15 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-15 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-15 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-15 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-15 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-15 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-15 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-15 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-15 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-15 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-15 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-15 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-15 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-15 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 5e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 6e-15 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 8e-15 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 9e-15 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 9e-15 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 9e-15 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 9e-15 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 9e-15 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-14 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-14 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-14 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-14 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-14 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-14 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-14 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-14 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-14 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-14 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-14 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-14 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-14 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-14 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 5e-14 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 7e-14 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 9e-14 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-13 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-13 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-13 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-13 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-13 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-13 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-13 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 4e-13 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-13 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 5e-13 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 6e-13 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 6e-13 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 7e-13 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 8e-13 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 8e-13 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 9e-13 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-12 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-12 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-12 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-12 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-12 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 4e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-12 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 6e-12 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 6e-12 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 6e-12 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 8e-12 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-11 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-11 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-11 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-11 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-11 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-11 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 4e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-11 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 5e-11 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-11 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 6e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-11 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 7e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 7e-11 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 8e-11 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 8e-11 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 8e-11 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-10 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-10 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-10 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-10 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-10 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-10 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-10 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-10 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-10 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-10 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-10 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-10 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 7e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 8e-10 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 8e-10 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-09 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-09 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-09 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-09 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-09 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-09 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-09 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-09 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 4e-09 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 6e-09 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 6e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-09 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 7e-09 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 8e-09 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-08 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 1e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-08 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-08 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-08 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-08 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 4e-08 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 5e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-08 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 6e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 8e-08 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-07 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-07 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-07 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-07 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 2e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-07 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-07 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 5e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 6e-07 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 7e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 7e-07 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 8e-07 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 9e-07 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 9e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-06 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-06 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-06 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 4e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 4e-06 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 5e-06 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 6e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-06 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 8e-06 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 9e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 9e-06 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 1e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-05 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 4e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 5e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 5e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 5e-05 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 5e-05 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 7e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 8e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-04 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-04 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-04 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 3e-04 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 3e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-04 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 5e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 7e-04 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 7e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.001 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.001 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 0.001 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 0.002 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.002 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 0.002 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.004 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.004 | |
| pfam13191 | 154 | pfam13191, AAA_16, AAA ATPase domain | 0.004 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 418 bits (1078), Expect = e-138
Identities = 152/239 (63%), Positives = 193/239 (80%), Gaps = 1/239 (0%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE ++V FRYP+RP+V I G SL +P G T ALVG SG GKSTV+SL+ERFYDP +GE+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAK 494
L+DG+DI+ L L+W+R +IGLVSQEP+LF ++ ENI YGK +ATD+E+ A + AN
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 495 FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD 554
FI LP G DT+ GE G+QLSGGQKQRIAIARA+L+NPKILLLDEATSALDAESE++VQ+
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 555 ALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
AL + M RTT+V+AHRL+TIRNADLIAV+ G++VE+GTHDEL+ +G Y +LV+ Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA-QKGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 411 bits (1058), Expect = e-135
Identities = 155/237 (65%), Positives = 191/237 (80%), Gaps = 2/237 (0%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IE + VSF+YP+RPDV I + L L+IP GKTVALVG SG GKSTV++L+ERFYDP SG +
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAH 1159
LLD +++ L WLR Q+GLVSQEPVLF+ TI NI YGK AT+EE+ A + +N H
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGK-PDATDEEVEEAAKKANIH 119
Query: 1160 NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQ 1219
+FI +LP GY+T VGERG QLSGGQKQRIAIARA+L+NPKILLLDEATSALDAESE++VQ
Sbjct: 120 DFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQ 179
Query: 1220 DALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLV 1276
+AL+R M RTT+V+AHRL+TI+NAD+IAV++NG + EQG+HD LM G YA LV
Sbjct: 180 EALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA-QKGVYAKLV 235
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 420 bits (1081), Expect = e-133
Identities = 193/564 (34%), Positives = 318/564 (56%), Gaps = 12/564 (2%)
Query: 52 LMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAA 111
L+++ + + S L + L+ G +I++ + E+ ++ + L LA G+
Sbjct: 15 LLLLAILLLLLSALLSLLLPLLIGRIIDAL-----LADLGELLELLLLLLLLALLGGVLR 69
Query: 112 FLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGE 171
LQ G++ +R + +LR + FFD +G++I R++ D + +
Sbjct: 70 ALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK-AKSGDLISRLTNDVEAVSNLVST 128
Query: 172 KVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYS 231
+ + G V+ + W LAL+LL LP + + +A K+S R + A
Sbjct: 129 VLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALG 188
Query: 232 EAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIG 291
E + +++SGIR + +F E + ++++ + RA ++ + + +++L
Sbjct: 189 ELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSL 248
Query: 292 TYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFET 351
L + G L++ G + I+ ++ + Q ++ AAA ++FE
Sbjct: 249 GTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFEL 308
Query: 352 IKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQ 411
+ +P+++ L+ G IE +V F YP + + S + G A+VG
Sbjct: 309 LDEEPEVEDPPDP---LKDTIGSIEFENVSFSYP--GKKPVLKDISFSIEPGEKVAIVGP 363
Query: 412 SGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENI 471
SGSGKST+I L+ R YDP +GE+LIDGIDI+ + L +R++IG+VSQ+P+LF+ ++RENI
Sbjct: 364 SGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENI 423
Query: 472 AYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531
A G+ +ATD+EI A++LANA +FI LP G DT+ GE G LSGGQ+QR+AIARA+L+N
Sbjct: 424 ALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483
Query: 532 PKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVE 591
P IL+LDEATSALD E+E ++QDAL K++ RTT+++AHRL+TI+NAD I V+ G+IVE
Sbjct: 484 PPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVE 543
Query: 592 KGTHDELIKDPEGPYTQLVRLQEG 615
+GTH+EL+ G Y +L + Q G
Sbjct: 544 RGTHEELLAK-GGLYARLYQAQGG 566
|
Length = 567 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 406 bits (1046), Expect = e-128
Identities = 204/579 (35%), Positives = 318/579 (54%), Gaps = 18/579 (3%)
Query: 701 KLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFW 760
L R L YL + ++ + + + ++ P LL+ I +L +
Sbjct: 2 SLLRRLLKYLKYKLLLLAILLLLLSALLSLLLP---LLIGRIIDALLADLGELLELLLLL 58
Query: 761 ALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVG 820
L+ L+ G++ Q+Y G K++ +R FEK++ +S+FD SG +
Sbjct: 59 LLLALLGGVLRA----LQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK--AKSGDLI 112
Query: 821 ARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLM-LVQGYT 879
+RL+ D + +LV L LV +I + L++ F+ +W LA ++L + PL+ LV
Sbjct: 113 SRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Query: 880 QTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRR 939
K K + + E + +++ IR + +F +E++ + +E+ E + +R
Sbjct: 173 ARKSRKLSRRVREAL-GELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRA 231
Query: 940 GILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAM 999
L L+ +G LV G T G + L + Q +
Sbjct: 232 SRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEV 291
Query: 1000 APDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFR 1059
+A +A +FE+LD +P++ +D L G+IE VSF YP + +
Sbjct: 292 VSLLQRASAAAERLFELLDEEPEV---EDPPDPLKDTIGSIEFENVSFSYP--GKKPVLK 346
Query: 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119
++ SI G+ VA+VG SGSGKST+I L+ R YDP SG +L+D I++ L LR+++G
Sbjct: 347 DISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406
Query: 1120 LVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQ 1179
+VSQ+P+LF+ TIR NIA G+ AT+EEI A + +NAH FI+ LP GY+T VGERGV
Sbjct: 407 IVSQDPLLFSGTIRENIALGRPD-ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVN 465
Query: 1180 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLT 1239
LSGGQ+QR+AIARA+L+NP IL+LDEATSALD E+E ++QDAL++++ RTT+++AHRL+
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS 525
Query: 1240 TIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278
TIKNAD I V+ NG I E+G+H+ L+ G YA L
Sbjct: 526 TIKNADRIIVLDNGRIVERGTHEELLA-KGGLYARLYQA 563
|
Length = 567 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 399 bits (1026), Expect = e-125
Identities = 194/515 (37%), Positives = 285/515 (55%), Gaps = 4/515 (0%)
Query: 100 FLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMS 159
L +A + + GER IR ++ FFD +GEV+ R++
Sbjct: 64 LLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDK-NRSGEVVSRLT 122
Query: 160 GDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIM 219
DT L+Q +G + ++ GG ++ L ++L +P +++ +
Sbjct: 123 TDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRV 182
Query: 220 SKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSG 279
K+S Q ++AG+ +T+ IRTV +F E ++ ++ AY AA Q+
Sbjct: 183 RKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRA 242
Query: 280 IGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVIN-VIMAIMTGGMSLGQTSPCLNAF 338
+ ++++ V G +W G+ +I + GT+ V A+M G S+G S
Sbjct: 243 LLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAG-SIGTLSEVWGEL 301
Query: 339 AGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSL 398
AA ++ E ++ +P I + GEIE V F YPARP+ G +L
Sbjct: 302 QRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNL 361
Query: 399 HVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQ 458
V G T ALVG SG+GKST+ L+ RFYDP +G +L+DG+D+++L +R ++ LV Q
Sbjct: 362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQ 421
Query: 459 EPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQ 518
+P+LFA S+ ENI YG+ +ATD+E+ A A+A +FI LP+G DT GE G LSGGQ
Sbjct: 422 DPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQ 481
Query: 519 KQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNA 578
+QRIAIARAILK+ ILLLDEATSALDAESE++VQ AL +M RTT+++AHRL T+ A
Sbjct: 482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKA 541
Query: 579 DLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
D I V+ QG+IV +GTH ELI G Y +L RLQ
Sbjct: 542 DRIVVMDQGRIVAQGTHAELIAK-GGLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 397 bits (1021), Expect = e-123
Identities = 190/518 (36%), Positives = 291/518 (56%), Gaps = 26/518 (5%)
Query: 103 LAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDT 162
L+ + ++A L+ + T R RIR +++LRQD+GFFD E TGE+ R+S DT
Sbjct: 210 LSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFD-ENKTGELTSRLSSDT 268
Query: 163 ILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIMSKM 222
+ ++ V ++ + G L L +V L LP + +A +
Sbjct: 269 QTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLL 328
Query: 223 SSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKL----QVAYRAAVQQGM-- 276
S Q A ++A V E+ +SG+RTV SF E+ ++ L Q+ R A+
Sbjct: 329 SEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYL 388
Query: 277 ----VSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTS 332
V G+ + VL+L +YG +L++ + G +++ ++ G ++ S
Sbjct: 389 WTTSVLGMLIQVLVL----------YYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLS 438
Query: 333 PCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQI 392
+ A+ K+FE + RKP I T + +EG IE +DV F YP RP+V +
Sbjct: 439 YVYSGMMQAVGASEKVFEYLDRKPNIPL--TGTLAPLNLEGLIEFQDVSFSYPNRPDVPV 496
Query: 393 FAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREK 452
G + + G ALVG SGSGKSTV +L++ Y P G+VL+DG+ + + ++ +
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556
Query: 453 IGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGT 512
+ LV QEP+LF+ S+RENIAYG + D+EI A + ANA FI + P G DT GE G+
Sbjct: 557 VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGS 616
Query: 513 QLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRL 572
QLSGGQKQRIAIARA+++ P++L+LDEATSALDAE E+++Q++ + SRT +++AHRL
Sbjct: 617 QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES--RSRASRTVLLIAHRL 674
Query: 573 TTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610
+T+ AD I V+ +G +VE GTH +L++D G Y LV
Sbjct: 675 STVERADQILVLKKGSVVEMGTHKQLMEDQ-GCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 389 bits (1002), Expect = e-120
Identities = 214/614 (34%), Positives = 324/614 (52%), Gaps = 59/614 (9%)
Query: 683 EGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSS 742
E +QG +E L+ RL L+ ++P L+ L LSS
Sbjct: 137 EAEQGQSETADLLF---------RLLGLSGRDWPWLISA------------FVFLTLSSL 175
Query: 743 IRMFF-----EPEDKLRKDSRFWAL---IYL--VLGIINLIAVPFQNYFFGVAGGKLIRR 792
MF D L D AL I+ +L I + ++ + F ++ R
Sbjct: 176 GEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235
Query: 793 IRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGL 852
IR F ++ Q++ +FD N +G + +RLS+D T+ + ++ ++++N+ + L
Sbjct: 236 IREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLL 293
Query: 853 IIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTV 912
+ L V L PL+ + K + S + + +A+QVA +A+ +RTV
Sbjct: 294 GFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTV 353
Query: 913 ASFCSEEKVMDLYEKKCEGPLKNGVRRGIL--------SGAGFGFSFLVLYCTNAFCFYI 964
SF +EE +++ E L+ R+ + S G LVLY
Sbjct: 354 RSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYY-------- 405
Query: 965 GSVLVEHGKATFGQVFKVFFALTISALG--VSQTSAMAPDTTKAKDSAASIFEILDSKPK 1022
G LV GK + G + V F L LG V S + +A ++ +FE LD KP
Sbjct: 406 GGQLVLTGKVSSGNL--VSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPN 463
Query: 1023 IDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKS 1082
I + + ++ G IE + VSF YP RPDV + + L ++ G+ VALVG SGSGKS
Sbjct: 464 IPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKS 521
Query: 1083 TVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQG 1142
TV AL++ Y P G VLLD + L ++ +L +Q+ LV QEPVLF+ ++R NIAYG
Sbjct: 522 TVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT- 580
Query: 1143 GATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILL 1202
+EEI+AA +A+NAH+FI P+GY+T VGE+G QLSGGQKQRIAIARA+++ P++L+
Sbjct: 581 DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLI 640
Query: 1203 LDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHD 1262
LDEATSALDAE E+++Q++ R +RT +++AHRL+T++ AD I V+K G + E G+H
Sbjct: 641 LDEATSALDAECEQLLQESRSR--ASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHK 698
Query: 1263 ALMKITDGAYASLV 1276
LM+ Y LV
Sbjct: 699 QLMEDQG-CYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 403 bits (1036), Expect = e-118
Identities = 302/1217 (24%), Positives = 556/1217 (45%), Gaps = 171/1217 (14%)
Query: 33 NQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHE 92
QK+PF+ F L+ V + A SG PF +FG ++ + +
Sbjct: 42 TQKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE------N 95
Query: 93 VSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTG 152
V+ + + + I +F+ C V + ++ +LK++ QD F D +
Sbjct: 96 VNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGS- 154
Query: 153 EVIGRMSGDTILIQEAMGEKVG-KFIQLM---STFFGGFVVALARGWFLALVLLACLPAI 208
+++ D E + +G KFI + S F G ++ +L + L L + P I
Sbjct: 155 ----KLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLI 210
Query: 209 VIAGGSMALIMSKMSSRGQIAYSE-AGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVA 267
I G + K++ + + Y+ +++E+ + GIRTV S+ GEK ++K+N ++
Sbjct: 211 YICG-VICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLY 269
Query: 268 YRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIE--------KGYNGGTVINVIM 319
+ ++ + + +G++ ++ +Y WYG+++II ++GG+VI++++
Sbjct: 270 SKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILL 329
Query: 320 AIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRD 379
++ L P + + A ++E I RKP ++ D G L+ I+ +I+ ++
Sbjct: 330 GVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENND-DGKKLKDIK-KIQFKN 387
Query: 380 VYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLI-DG 438
V F Y R +V+I+ + + G T A VG+SG GKST++ L+ER YDP G+++I D
Sbjct: 388 VRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDS 447
Query: 439 IDIKKLQLKWIREKIGLVSQEPILFATSLRENIA--------------YGKENATDQE-- 482
++K + LKW R KIG+VSQ+P+LF+ S++ NI Y E+ D +
Sbjct: 448 HNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQEN 507
Query: 483 --------------------IRTAIELANAAK---------------------FIDKLPK 501
+ EL K F+ LP
Sbjct: 508 KNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPD 567
Query: 502 GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDAL--VKI 559
+T+ G + ++LSGGQKQRI+IARAI++NPKIL+LDEATS+LD +SE +VQ + +K
Sbjct: 568 KYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKG 627
Query: 560 MTSRTTVVVAHRLTTIRNADLIAVV------------------------------HQGK- 588
+R T+++AHRL+TIR A+ I V+
Sbjct: 628 NENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNN 687
Query: 589 ----------------IVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDS 632
I+E+GTHD L+K+ G Y ++ Q+ S + D D
Sbjct: 688 NNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMK 747
Query: 633 SFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQGGAERT 692
S D + + +S + N E G +
Sbjct: 748 SSAYKDSERGYDPDEMNGNSKHENESASNKKSC------KMSDENASENNAG-----GKL 796
Query: 693 PLM--IEKRQKLSMRRLAYLNKPEFPV---LLIGSIAAGIHGVIFPIFGLLLSSSIRMFF 747
P + + KR+ + L + + F + I +++ + G ++P+F LL + + F
Sbjct: 797 PFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLF 856
Query: 748 EPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEIS 807
+ + L +S ++L LV+ I I+ +NY+ V G K+ + ++ FE +++QEIS
Sbjct: 857 DFAN-LEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEIS 915
Query: 808 WFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVI- 866
+FD ++ G + A ++ D +++ + +++ + I ++++F I+A V+
Sbjct: 916 FFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLT 975
Query: 867 ---------------LAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRT 911
L + + + Q + +++D + ++++ S + +A ++ T
Sbjct: 976 GTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDE-IFKDPSFLIQEAFYNMNT 1034
Query: 912 VASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEH 971
V + E+ +L EK + K R+ +++ +GFS N+F ++ GS L+
Sbjct: 1035 VIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRR 1094
Query: 972 GKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGM 1031
G K F + + ++ D+ AK S + ++ K ID + G+
Sbjct: 1095 GTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGI 1154
Query: 1032 TLSS---VGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALI 1088
+ + + G IE+ V+F+Y +RP+V I+++L S S KT A+VGE+GSGKSTV++L+
Sbjct: 1155 RIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLL 1214
Query: 1089 ERFYDPDSGHVLLDNIE 1105
RFYD + H ++ E
Sbjct: 1215 MRFYDLKNDHHIVFKNE 1231
|
Length = 1466 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 377 bits (971), Expect = e-117
Identities = 202/561 (36%), Positives = 313/561 (55%), Gaps = 12/561 (2%)
Query: 723 IAAGIHGVIFPIFGLLLSSSIRMF----FEPEDKLRKDSRFWALIYLVLGIINLIAVPFQ 778
+AA + +I L L ++R+ F + + F L+ + L + + +
Sbjct: 21 LAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLA--LGTAAR 78
Query: 779 NYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSL 838
Y G +++ IR F ++ S+FD N SG V +RL+TD + ++S++G SL
Sbjct: 79 FYLVTWLGERVVADIRRAVFAHLISLSPSFFD--KNRSGEVVSRLTTDTTLLQSVIGSSL 136
Query: 839 ALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEA 898
++ ++N GLI+ F + L ++L PL+L+ + ++ S +++ +A
Sbjct: 137 SMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADA 196
Query: 899 SQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTN 958
A + +G+IRTV +F E+ + E + +R ++++
Sbjct: 197 GSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAI 256
Query: 959 AFCFYIGSVLVEHGKATFGQVFK-VFFALTISALGVSQTSAMAPDTTKAKDSAASIFEIL 1017
++G+ V GK + G + + VF+A+ + A + S + + +A +A + E+L
Sbjct: 257 VGVLWVGAHDVIAGKMSAGTLGQFVFYAV-MVAGSIGTLSEVWGELQRAAGAAERLIELL 315
Query: 1018 DSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGES 1077
++P I + + G IE V+F YP RPD L L++ G+TVALVG S
Sbjct: 316 QAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPS 375
Query: 1078 GSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIA 1137
G+GKST+ L+ RFYDP SG +LLD ++L + + LR +M LV Q+PVLF ++ NI
Sbjct: 376 GAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIR 435
Query: 1138 YGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKN 1197
YG+ AT+EE+ AA A++AH FISALP GY+T +GERGV LSGGQ+QRIAIARA+LK+
Sbjct: 436 YGRPD-ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD 494
Query: 1198 PKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAE 1257
ILLLDEATSALDAESE++VQ ALE +M RTT+++AHRL T+ AD I V+ G I
Sbjct: 495 APILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVA 554
Query: 1258 QGSHDALMKITDGAYASLVAL 1278
QG+H L+ G YA L L
Sbjct: 555 QGTHAELIA-KGGLYARLARL 574
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 373 bits (960), Expect = e-116
Identities = 191/574 (33%), Positives = 302/574 (52%), Gaps = 14/574 (2%)
Query: 704 MRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALI 763
R +Y+ +P L++ +A + LL + F R S W +
Sbjct: 3 RRLWSYV-RPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGF----GGRDRSVLWWVP 57
Query: 764 YLVLGIINL--IAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGA 821
+V+G+ L I Y K++R IR FEK++ +S+FD +G++ +
Sbjct: 58 LVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLS 115
Query: 822 RLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQT 881
R++ D+ + S D+ ++V+ T+ I+ +W L +++ + P++ + +
Sbjct: 116 RITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVS 175
Query: 882 KFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGI 941
K ++ S + + + + VA + + R V F + ++ + ++
Sbjct: 176 KRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTS 235
Query: 942 LSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAP 1001
+ L+ A +I + G T G A+ + + +
Sbjct: 236 AGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNA 295
Query: 1002 DTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNL 1061
+ +A S+F +LDS P+ D+ + G +E R V+F+YP R D ++
Sbjct: 296 PMQRGLAAAESLFTLLDSPPEKDTGTRA---IERARGDVEFRNVTFRYPGR-DRPALDSI 351
Query: 1062 CLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLV 1121
L I G+TVALVG SGSGKST++ LI RFY+PDSG +LLD +L + L+ LR+Q+ LV
Sbjct: 352 SLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALV 411
Query: 1122 SQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLS 1181
SQ+ VLFN+TI NIAYG+ A EI A A+ A +F+ LP G +T +GE GV LS
Sbjct: 412 SQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLS 471
Query: 1182 GGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTI 1241
GGQ+QR+AIARA+LK+ IL+LDEATSALD ESER+VQ ALER+M RTT+V+AHRL+TI
Sbjct: 472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTI 531
Query: 1242 KNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
+ AD I V+ +G I E+G+H+ L+ +G YA L
Sbjct: 532 EKADRIVVMDDGRIVERGTHNELLA-RNGLYAQL 564
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 346 bits (889), Expect = e-110
Identities = 138/236 (58%), Positives = 182/236 (77%), Gaps = 3/236 (1%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+E + V+F+YP + R++ L IP+G+TVALVG SGSGKST++ LI RFYD DSG +
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAH 1159
L+D ++ + L+ LR+Q+GLVSQ+ LFN+T+ NIAYG+ G AT EE+ A A+NAH
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPG-ATREEVEEAARAANAH 118
Query: 1160 NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQ 1219
FI LP GY+T +GERGV+LSGGQ+QRIAIARA+LK+P IL+LDEATSALD ESER+VQ
Sbjct: 119 EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQ 178
Query: 1220 DALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
ALER+M NRTT V+AHRL+TI+NAD I V+++G I E+G+H+ L+ G YA L
Sbjct: 179 AALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA-QGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 355 bits (914), Expect = e-109
Identities = 196/574 (34%), Positives = 302/574 (52%), Gaps = 32/574 (5%)
Query: 52 LMIVGTISAIGSGLAHPFMTLIFGHLIN-SFGSSDRSHVVHEVSKVAVKFLYLAAGTGIA 110
+++ ++ I + + L++ FG DRS + V + + LA GI
Sbjct: 15 GLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLW----WVPLVVIGLAVLRGIC 70
Query: 111 AFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMG 170
+F+ + IR + +L + FFD TG ++ R++ D+ + A
Sbjct: 71 SFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFD-RQPTGTLLSRITFDSEQVASAAT 129
Query: 171 EKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAY 230
+ ++ T G F+V L W L L+++ LP + I ++ + ++S Q +
Sbjct: 130 DAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSM 189
Query: 231 SEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVI 290
+ TV E+T+ G R V F G+ +++ R A++ M S + + +I
Sbjct: 190 GQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMK--MTSAGSISSPITQLI 247
Query: 291 GTYGLAVWYGSKLIIEKGY---NGGTVINVIMAIMTGGMSLGQTSPCL-------NAFAG 340
+ LAV ++ + G A +T ++ L
Sbjct: 248 ASLALAV-----VLFIALFQAQAGSLTAGDFTAFIT---AMIALIRPLKSLTNVNAPMQR 299
Query: 341 GQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHV 400
G AAA +F + P+ D T +E+ G++E R+V FRYP R + SL +
Sbjct: 300 GLAAAESLFTLLDSPPEKD---TGTRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVI 355
Query: 401 PSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEP 460
G T ALVG+SGSGKST+++L+ RFY+PD+G++L+DG D+ L +R ++ LVSQ+
Sbjct: 356 EPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDV 415
Query: 461 ILFATSLRENIAYGK-ENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519
+LF ++ NIAYG+ E A EI A+ A A F+DKLP GLDT GE+G LSGGQ+
Sbjct: 416 VLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQR 475
Query: 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNAD 579
QR+AIARA+LK+ IL+LDEATSALD ESER+VQ AL ++M RTT+V+AHRL+TI AD
Sbjct: 476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKAD 535
Query: 580 LIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
I V+ G+IVE+GTH+EL+ G Y QL +Q
Sbjct: 536 RIVVMDDGRIVERGTHNELL-ARNGLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 336 bits (864), Expect = e-107
Identities = 131/235 (55%), Positives = 173/235 (73%), Gaps = 2/235 (0%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+E ++V FRYP + SL +P+G T ALVG SGSGKST+++L+ RFYD D+G +
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAK 494
LIDG D++ L +R +IGLVSQ+ LF ++ ENIAYG+ AT +E+ A ANA +
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 495 FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD 554
FI +LP+G DT+ GE G +LSGGQ+QRIAIARA+LK+P IL+LDEATSALD ESER+VQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 555 ALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQL 609
AL ++M +RTT V+AHRL+TI NAD I V+ GKIVE+GTH+EL+ G Y +L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 349 bits (897), Expect = e-105
Identities = 175/525 (33%), Positives = 284/525 (54%), Gaps = 21/525 (4%)
Query: 96 VAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVI 155
+ + L+ A + +L G+R + G + + +LR + +F+ + GE+I
Sbjct: 200 LLLAALFEALLRLLRTYLIA----HLGKRLDLELSGRFFRHLLRLPLSYFEK-RSVGEII 254
Query: 156 GRMSGDTILIQEAMGEKVGKFIQLMS---TFFGGFVVALARGWFLALVLLACLPAIVIAG 212
R+ + I+E G + L+ V W L L++LA +P V+
Sbjct: 255 SRVR-ELEQIREF---LTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLIT 310
Query: 213 GSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAV 272
++ + + + +E + + +T+ GI TV + E + +++N+L
Sbjct: 311 LIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGF 370
Query: 273 QQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVI--NVIMAIMTGGMS-LG 329
+ ++ I + L + L +W+G+ L++E G ++ N++ ++ L
Sbjct: 371 KTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLS 430
Query: 330 QTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPE 389
Q F + A ++ + + P+ D + I L K++GEIE +V FRY
Sbjct: 431 QL---WTDFQQAKVALERLGDILDTPPE-QEGDKTLIHLPKLQGEIEFENVSFRYGPDDP 486
Query: 390 VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWI 449
+ SL +P G A+VG+SGSGKST++ L+ Y P G +L+DG+D+ + L +
Sbjct: 487 PVL-EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASL 545
Query: 450 REKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGE 509
R ++G V Q+P LF+ S+RENIA G ATD+EI A +LA A +FI+ LP G DT GE
Sbjct: 546 RRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE 605
Query: 510 HGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVA 569
G LSGGQ+QR+A+ARA+L PKILLLDEATSALD E+E I+ L++I+ RT +++A
Sbjct: 606 GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIA 665
Query: 570 HRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQE 614
HRL+TIR+AD I V+ QGKIVE+G+H+EL+ G Y +L + QE
Sbjct: 666 HRLSTIRSADRIIVLDQGKIVEQGSHEELL-AQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 340 bits (874), Expect = e-102
Identities = 180/602 (29%), Positives = 294/602 (48%), Gaps = 36/602 (5%)
Query: 689 AERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFE 748
A R I L + + +L+ S+ + L ++
Sbjct: 130 ASRKFKDIPPFGLSWFIPLLFKYRRLLFEVLLASLLLQL-------LALATPLFSQIVI- 181
Query: 749 PEDKLRKDSRFWALIYLVLG-----IINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVH 803
DK+ D+ L L +G + + + Y G +L + F ++
Sbjct: 182 --DKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLR 239
Query: 804 QEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILA 863
+S+F S G + +R+ + IR + S+ ++ ++ L + F +W L
Sbjct: 240 LPLSYF--EKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLT 296
Query: 864 FVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVAN------DAVGSIRTVASFCS 917
++LA PL ++ ++ + + + A + + I TV + +
Sbjct: 297 LIVLAAIPLNVLITLIFQPLLR------RKTRKLIEESAEQQSFLVETIKGIETVKALAA 350
Query: 918 EEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFG 977
E + ++ + + G + L+ L+ ++ + G++LV G+ T G
Sbjct: 351 EPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLG 410
Query: 978 QVFKVFFALTISALG-VSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSV 1036
Q+ F L + +++ S + D +AK + + +ILD+ P+ + K + L +
Sbjct: 411 QLV-AFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTL-IHLPKL 468
Query: 1037 GGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS 1096
G IE VSF+Y + +L L IP G+ VA+VG SGSGKST++ L+ Y P
Sbjct: 469 QGEIEFENVSFRYGPDDPPVL-EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ 527
Query: 1097 GHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEAS 1156
G +LLD ++L L+ LR+Q+G V Q+P LF+ +IR NIA G AT+EEII A + +
Sbjct: 528 GRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE-ATDEEIIEAAQLA 586
Query: 1157 NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER 1216
AH FI LP GY+T VGE G LSGGQ+QR+A+ARA+L PKILLLDEATSALD E+E
Sbjct: 587 GAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEA 646
Query: 1217 VVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLV 1276
++ L +++ RT +++AHRL+TI++AD I V+ G I EQGSH+ L+ G YA L
Sbjct: 647 IILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLY 705
Query: 1277 AL 1278
Sbjct: 706 QQ 707
|
Length = 709 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 312 bits (802), Expect = 3e-98
Identities = 123/236 (52%), Positives = 168/236 (71%), Gaps = 4/236 (1%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IE V+F Y P + +++ +IP+GK VA+VG SGSGKST++ L+ RFYD SG +
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAH 1159
L+D ++ + L LR+ +G+V Q+ VLFN+TI NI YG+ AT+EE+I A +A+ H
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPD-ATDEEVIEAAKAAQIH 117
Query: 1160 NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQ 1219
+ I P GY+T VGERG++LSGG+KQR+AIARA+LKNP ILLLDEATSALD +ER +Q
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1220 DALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
AL V RTT+V+AHRL+TI NAD I V+K+G I E+G+H+ L+ G YA +
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA-KGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 308 bits (791), Expect = 9e-97
Identities = 113/228 (49%), Positives = 165/228 (72%), Gaps = 2/228 (0%)
Query: 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
GEIE +V F Y + + + + G T A+VG +G+GK+T+I+L+ RFYDP G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 433 EVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANA 492
++LIDGIDI+ + K +R IG+V Q+ LF+ ++ ENI G+ NATD+E+ A + A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 493 AKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIV 552
FI KLP G DT+ GE+G LS G++Q +AIARA+L++PKIL+LDEATS +D E+E+++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 553 QDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIK 600
Q+AL K+M RT++++AHRL+TI+NAD I V+ GKI+E+GTHDEL+
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 321 bits (825), Expect = 1e-96
Identities = 201/572 (35%), Positives = 321/572 (56%), Gaps = 26/572 (4%)
Query: 53 MIVGTISAIGSGLAHPFM-TLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAA 111
+IV ++ I + + FM +L+ L + FG +DRS V+ + V + + L GI +
Sbjct: 27 LIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRS-VLKWMPLVVIGLMIL---RGITS 82
Query: 112 FLQVSC--WMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAM 169
F+ C W V+G+ T R L+ ++ + FFD ++T G ++ R++ D+ + +
Sbjct: 83 FISSYCISW-VSGKVVMTMRRRLF-GHMMGMPVSFFDKQST-GTLLSRITYDSEQVASSS 139
Query: 170 GEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIA 229
+ ++ ++ G F++ W L+L+L+ P + IA ++ +S Q
Sbjct: 140 SGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNT 199
Query: 230 YSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGM--VSGIGLGVLML 287
+ T EQ + G + V F G++ ++++ +V+ R QQGM VS + ++
Sbjct: 200 MGQVTTSAEQMLKGHKEVLIFGGQEVETKRFD---KVSNRMR-QQGMKMVSASSISDPII 255
Query: 288 TVIGTYGLA-VWYGSKL-IIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNA-FAGGQAA 344
+I + LA V Y + + GT I V+ + M M ++ +NA F G AA
Sbjct: 256 QLIASLALAFVLYAASFPSVMDTLTAGT-ITVVFSSMIALMRPLKSLTNVNAQFQRGMAA 314
Query: 345 AYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGT 404
+F + + + D +E+ +G+IE R+V F YP + EV + +P+G
Sbjct: 315 CQTLFAILDLEQEKD---EGKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGK 370
Query: 405 TAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFA 464
T ALVG+SGSGKST+ +L+ RFYD D GE+L+DG D++ L +R ++ LVSQ LF
Sbjct: 371 TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN 430
Query: 465 TSLRENIAYGKENA-TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIA 523
++ NIAY + + ++I A +A A FI+K+ GLDT+ GE+G LSGGQ+QRIA
Sbjct: 431 DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490
Query: 524 IARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAV 583
IARA+L++ IL+LDEATSALD ESER +Q AL ++ +RT++V+AHRL+TI AD I V
Sbjct: 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILV 550
Query: 584 VHQGKIVEKGTHDELIKDPEGPYTQLVRLQEG 615
V G+IVE+GTH EL+ G Y QL ++Q G
Sbjct: 551 VEDGEIVERGTHAELLAQ-NGVYAQLHKMQFG 581
|
Length = 582 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 318 bits (818), Expect = 1e-95
Identities = 188/533 (35%), Positives = 280/533 (52%), Gaps = 55/533 (10%)
Query: 765 LVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLS 824
++ GI + I+ +Y GK++ +R F ++ +S+FD S+G++ +R++
Sbjct: 76 ILRGITSFIS----SYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRIT 129
Query: 825 TDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFM 884
D+ + S +L VV+ A+I I+ F +W L+ +++ ++P++
Sbjct: 130 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIV---SIAIRVVS 186
Query: 885 KGFSADAKLMYEEASQVANDAVGSI---RTVASFCSEEKVMDLYEKKCEGPLKNGVRR-- 939
K F +K M QV A + + V F +E E K + N +R+
Sbjct: 187 KRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQE-----VETKRFDKVSNRMRQQG 241
Query: 940 -------GILSG-----AGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALT 987
I A +F VLY + SV+ T VF AL
Sbjct: 242 MKMVSASSISDPIIQLIASLALAF-VLYAAS-----FPSVMDTLTAGTITVVFSSMIALM 295
Query: 988 ISALGVSQTSA-----MAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIEL 1042
++ +A MA T +F ILD + + D K + G IE
Sbjct: 296 RPLKSLTNVNAQFQRGMAACQT--------LFAILDLEQEKDEGKRV---IERAKGDIEF 344
Query: 1043 RCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLD 1102
R V+F YP + +V RN+ IP+GKTVALVG SGSGKST+ L+ RFYD D G +LLD
Sbjct: 345 RNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLD 403
Query: 1103 NIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFI 1162
+L + L+ LR Q+ LVSQ LFN+TI NIAY + + E+I A + A +FI
Sbjct: 404 GHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFI 463
Query: 1163 SALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDAL 1222
+ + +G +T +GE GV LSGGQ+QRIAIARA+L++ IL+LDEATSALD ESER +Q AL
Sbjct: 464 NKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 523
Query: 1223 ERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
+ + NRT++V+AHRL+TI+ AD I VV++G I E+G+H L+ +G YA L
Sbjct: 524 DELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA-QNGVYAQL 575
|
Length = 582 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 302 bits (777), Expect = 1e-94
Identities = 118/239 (49%), Positives = 161/239 (67%), Gaps = 3/239 (1%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE +V F Y P + S +P+G A+VG SGSGKST++ L+ RFYD +G +
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAK 494
LIDG DI+++ L +R IG+V Q+ +LF ++ NI YG+ +ATD+E+ A + A
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 495 FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD 554
I + P G DT+ GE G +LSGG+KQR+AIARAILKNP ILLLDEATSALD +ER +Q
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 555 ALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
AL + RTT+V+AHRL+TI NAD I V+ G+IVE+GTH+EL+ G Y ++ + Q
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL-AKGGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 292 bits (750), Expect = 6e-91
Identities = 108/230 (46%), Positives = 162/230 (70%), Gaps = 3/230 (1%)
Query: 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
G IE V+F Y + +++ SI G+TVA+VG +G+GK+T+I L+ RFYDP G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASN 1157
+L+D I++ LR +G+V Q+ LF+ TI NI G+ AT+EE+I A + +
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPN-ATDEEVIEAAKEAG 117
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
AH+FI LP+GY+T +GE G LS G++Q +AIARA+L++PKIL+LDEATS +D E+E++
Sbjct: 118 AHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKL 177
Query: 1218 VQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKI 1267
+Q+ALE++M RT++++AHRL+TIKNAD I V+ +G I E+G+HD L+
Sbjct: 178 IQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 301 bits (773), Expect = 2e-89
Identities = 120/263 (45%), Positives = 170/263 (64%), Gaps = 3/263 (1%)
Query: 366 ITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVER 425
I L +++G +E DV F Y Q S G T A+VG +G+GKST+I+L++R
Sbjct: 326 IDLGRVKGAVEFDDVSFSYDNSR--QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQR 383
Query: 426 FYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRT 485
+DP +G +LIDG DI+ + +R I +V Q+ LF S+ +NI G+ +ATD+E+R
Sbjct: 384 VFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRA 443
Query: 486 AIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALD 545
A E A A FI++ P G DT+ GE G QLSGG++QR+AIARA+LK+P IL+LDEATSALD
Sbjct: 444 AAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALD 503
Query: 546 AESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGP 605
E+E V+ AL ++M RTT ++AHRL+T+RNAD I V G++VE G+ DEL+ G
Sbjct: 504 VETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV-ARGGR 562
Query: 606 YTQLVRLQEGSKEAEDALATDAD 628
+ L+R Q +E E A+
Sbjct: 563 FAALLRAQGMLQEDERRKQPAAE 585
|
Length = 588 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 299 bits (767), Expect = 1e-88
Identities = 134/317 (42%), Positives = 189/317 (59%), Gaps = 9/317 (2%)
Query: 962 FYIGSVLVEHGKATFGQV--FKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDS 1019
+G+ LV+ G+ G+V F F L I L Q A A FE+ D+
Sbjct: 258 LVLGAALVQKGQLRVGEVVAFVGFATLLIGRL--DQVVAFINQVFMAAPKLEEFFEVEDA 315
Query: 1020 KPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGS 1079
P + L V GA+E VSF Y Q ++ G+TVA+VG +G+
Sbjct: 316 VPDVRDPPGAI-DLGRVKGAVEFDDVSFSYDNSR--QGVEDVSFEAKPGQTVAIVGPTGA 372
Query: 1080 GKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG 1139
GKST+I L++R +DP SG +L+D ++ + LR+ + +V Q+ LFN +I NI G
Sbjct: 373 GKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVG 432
Query: 1140 KQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPK 1199
+ AT+EE+ AA E + AH+FI P GY+T VGERG QLSGG++QR+AIARA+LK+P
Sbjct: 433 RPD-ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP 491
Query: 1200 ILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQG 1259
IL+LDEATSALD E+E V+ AL+ +M RTT ++AHRL+T++NAD I V NG + E G
Sbjct: 492 ILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESG 551
Query: 1260 SHDALMKITDGAYASLV 1276
S D L+ G +A+L+
Sbjct: 552 SFDELVA-RGGRFAALL 567
|
Length = 588 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 282 bits (723), Expect = 1e-83
Identities = 158/403 (39%), Positives = 228/403 (56%), Gaps = 30/403 (7%)
Query: 886 GFSADAKLMYEEASQVANDAVGSIRTVASFCSEE-------KVMDLYEKKCEGPLKNGVR 938
F +A+ A D++ + TV F +EE ++ YEK +K V
Sbjct: 109 DFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAA---IKVHVS 165
Query: 939 RGIL-SGAGFGFSF-LVLYCTNAFCFYIGSVLVEHGKATFGQVFKV---FFALTISALGV 993
+L G FS L + + ++ VE G+ T G + V F L+I +
Sbjct: 166 LLVLNFGQTAIFSTGLRVMM------TMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFL 219
Query: 994 SQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKY-PTR 1052
+ +A +F++LD + ++ + D GA+ VSF Y P R
Sbjct: 220 G---FSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRR 276
Query: 1053 PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLS 1112
P I + +IP GKTVA+VGESG+GKST++ L+ RFYD +SG + +D ++
Sbjct: 277 P---ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQ 333
Query: 1113 WLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETN 1172
LR+ +G+V Q+ VLFN+TI NI YG+ AT EE+ AA EA+ H+FI +LP GY+T
Sbjct: 334 SLRRAIGIVPQDTVLFNDTIAYNIKYGRPD-ATAEEVGAAAEAAQIHDFIQSLPEGYDTG 392
Query: 1173 VGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTV 1232
VGERG++LSGG+KQR+AIAR +LKNP IL+LDEATSALD +E+ +Q AL V RTT+
Sbjct: 393 VGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTL 452
Query: 1233 VVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
V+AHRL+TI +AD I V+ NG I E+G+H+ L+ G YA +
Sbjct: 453 VIAHRLSTIIDADEIIVLDNGRIVERGTHEELLA-AGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 278 bits (713), Expect = 3e-80
Identities = 142/403 (35%), Positives = 219/403 (54%), Gaps = 40/403 (9%)
Query: 231 SEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSG-IGLGVLMLTV 289
+ A + + ++V+GI T+ + E Q +++ +L AY AA + G I + L
Sbjct: 314 AAATSFLVESVTGIETIKATATEPQFQNRWDRQL-AAYVAASFRVTNLGNIAGQAIELIQ 372
Query: 290 IGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGG-------Q 342
T+ + +W+G+ L+I G +S GQ N AG
Sbjct: 373 KLTFAILLWFGAHLVIG-----------------GALSPGQLV-AFNMLAGRVTQPVLRL 414
Query: 343 AAAYKMFE----TIKRKPKI-----DPYDTSGITLEKIEGEIELRDVYFRY-PARPEVQI 392
A ++ F+ ++R I +P L ++ G I ++ FRY P PEV
Sbjct: 415 AQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSPEV-- 472
Query: 393 FAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREK 452
+ +L + G +VG SGSGKST+ L++R Y P G+VL+DG+D+ W+R +
Sbjct: 473 LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532
Query: 453 IGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGT 512
+G+V QE +LF+ S+R+NIA A + + A +LA A FI +LP+G +T GE G
Sbjct: 533 MGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGA 592
Query: 513 QLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRL 572
LSGGQ+QRIAIARA++ NP+IL+ DEATSALD ESE ++ + +I RT +++AHRL
Sbjct: 593 NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRL 652
Query: 573 TTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEG 615
+T+R D I V+ +G+I E G H+EL+ G Y +L + Q G
Sbjct: 653 STVRACDRIIVLEKGQIAESGRHEELLALQ-GLYARLWQQQSG 694
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 277 bits (709), Expect = 1e-79
Identities = 151/457 (33%), Positives = 240/457 (52%), Gaps = 25/457 (5%)
Query: 829 TIRS-LVGDSLALVVQNIAT---IAAGLIIAFTANWILAFVILAVSPLML-VQGYTQTKF 883
IR+ L G +L +V+ + +A + T ++ ++ + L + V + +
Sbjct: 247 QIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRV 306
Query: 884 MKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVR---RG 940
F A A+ ++V I T+ + +E + + ++++ + R G
Sbjct: 307 EDKFERSA-----AATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLG 361
Query: 941 ILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKV-FFALTISALGVSQTSAM 999
++G L+ T A + G+ LV G + GQ+ A ++ V + + +
Sbjct: 362 NIAGQAIE---LIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQ-PVLRLAQL 417
Query: 1000 APDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDV-QIF 1058
D + + + +IL+S + L + GAI + F+Y PD ++
Sbjct: 418 WQDFQQTGIALERLGDILNSP--TEPRSAGLAALPELRGAITFENIRFRY--APDSPEVL 473
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118
NL L I G+ + +VG SGSGKST+ L++R Y P G VL+D ++L +WLR+QM
Sbjct: 474 SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533
Query: 1119 GLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGV 1178
G+V QE VLF+ +IR NIA G A E +I A + + AH+FIS LP GY T VGE+G
Sbjct: 534 GVVLQENVLFSRSIRDNIALCNPG-APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGA 592
Query: 1179 QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRL 1238
LSGGQ+QRIAIARA++ NP+IL+ DEATSALD ESE ++ + + RT +++AHRL
Sbjct: 593 NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRL 652
Query: 1239 TTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
+T++ D I V++ G IAE G H+ L+ G YA L
Sbjct: 653 STVRACDRIIVLEKGQIAESGRHEELLA-LQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 259 bits (663), Expect = 4e-79
Identities = 111/218 (50%), Positives = 156/218 (71%), Gaps = 1/218 (0%)
Query: 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
G ++ + V+F YPTRPD + +++ ++ G+ ALVG SGSGKSTV+AL+E FY P G
Sbjct: 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG 69
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASN 1157
VLLD + +++ +L ++ LV QEPVLF +++ NIAYG Q + E + A + ++
Sbjct: 70 QVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQS-CSFECVKEAAQKAH 128
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
AH+FIS L GY+T VGE+G QLSGGQKQR+AIARA+++NP++L+LDEATSALDAESE+
Sbjct: 129 AHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1218 VQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVI 1255
VQ AL RT +V+AHRL+T++ AD I V+ G I
Sbjct: 189 VQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 259 bits (664), Expect = 5e-79
Identities = 122/240 (50%), Positives = 162/240 (67%), Gaps = 5/240 (2%)
Query: 1040 IELRCVSFKYPTRPD-VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
I V F+Y +PD I N+ L I G+ V +VG SGSGKST+ LI+RFY P++G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNA 1158
VL+D +L +WLR+Q+G+V QE VLFN +IR NIA G + E +I A + + A
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPG-MSMERVIEAAKLAGA 117
Query: 1159 HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV 1218
H+FIS LP GY+T VGE+G LSGGQ+QRIAIARA++ NP+IL+ DEATSALD ESE +
Sbjct: 118 HDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAI 177
Query: 1219 QDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278
+ + RT +++AHRL+T+KNAD I V++ G I EQGSHD L+ +G YA L L
Sbjct: 178 MRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA-ENGLYAYLYQL 236
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 252 bits (645), Expect = 1e-76
Identities = 109/219 (49%), Positives = 155/219 (70%)
Query: 371 IEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD 430
++G ++ ++V F YP RP+ + S + G ALVG SGSGKSTV++L+E FY P
Sbjct: 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67
Query: 431 AGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELA 490
G+VL+DG I + + K++ K+ LV QEP+LFA SL++NIAYG ++ + + ++ A + A
Sbjct: 68 GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKA 127
Query: 491 NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER 550
+A FI +L G DT GE G+QLSGGQKQR+AIARA+++NP++L+LDEATSALDAESE+
Sbjct: 128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 551 IVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKI 589
VQ AL RT +V+AHRL+T+ AD I V+ G+I
Sbjct: 188 QVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 252 bits (646), Expect = 1e-76
Identities = 111/239 (46%), Positives = 154/239 (64%), Gaps = 2/239 (0%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
I V FRY I SL + G +VG+SGSGKST+ L++RFY P+ G V
Sbjct: 1 ITFEHVRFRYKP-DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV 59
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAK 494
L+DG D+ W+R ++G+V QE +LF S+R+NIA + + + A +LA A
Sbjct: 60 LVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHD 119
Query: 495 FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD 554
FI +LP+G DT+ GE G LSGGQ+QRIAIARA++ NP+IL+ DEATSALD ESE +
Sbjct: 120 FISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMR 179
Query: 555 ALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
+ I RT +++AHRL+T++NAD I V+ +G+IVE+G+HDEL+ G Y L +LQ
Sbjct: 180 NMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELL-AENGLYAYLYQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 249 bits (640), Expect = 2e-76
Identities = 90/214 (42%), Positives = 128/214 (59%), Gaps = 43/214 (20%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE ++V F YP RP+ + SL + G A+VG SGSGKST++ L+ R YDP +GE+
Sbjct: 1 IEFKNVSFSYPGRPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAK 494
LIDG+D++ L L+ +R+ I V Q+P LF+ ++RENI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 495 FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD 554
LSGGQ+QRIAIARA+L++P IL+LDEATSALD E+E ++ +
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 555 ALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGK 588
AL + +T +V+AHRL+TIR+AD I V+ G+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 259 bits (665), Expect = 1e-75
Identities = 150/385 (38%), Positives = 216/385 (56%), Gaps = 45/385 (11%)
Query: 246 TVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLML--TVIGTYGLAV-WYGSK 302
TV F E+ +Y++ L+ Y A + VS L VL T I + GL V S
Sbjct: 134 TVKYFGNEEYEAVRYDHALE-TYEKAAIKVHVS---LLVLNFGQTAIFSTGLRVMMTMSA 189
Query: 303 LIIEKGYNG-GTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAY-----------KMFE 350
L +E+G G ++N + A++ Q S LN +Y KMF+
Sbjct: 190 LGVEEGQLTVGDLVN-VNALLF------QLSIPLNFLG----FSYREIRQALTDMEKMFD 238
Query: 351 TIKRKPKID-----PYDTSGITLEKIEGEIELRDVYFRY-PARPEVQIFAGFSLHVPSGT 404
+ + ++ P G + +V F Y P RP I G S +P G
Sbjct: 239 LLDVEAEVSDAPDAPPLWPVRL-----GAVAFINVSFAYDPRRP---ILNGISFTIPLGK 290
Query: 405 TAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFA 464
T A+VG+SG+GKST++ L+ RFYD ++G + IDG DI+ + + +R IG+V Q+ +LF
Sbjct: 291 TVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN 350
Query: 465 TSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAI 524
++ NI YG+ +AT +E+ A E A FI LP+G DT GE G +LSGG+KQR+AI
Sbjct: 351 DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAI 410
Query: 525 ARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVV 584
AR ILKNP IL+LDEATSALD +E+ +Q AL ++ RTT+V+AHRL+TI +AD I V+
Sbjct: 411 ARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVL 470
Query: 585 HQGKIVEKGTHDELIKDPEGPYTQL 609
G+IVE+GTH+EL+ G Y ++
Sbjct: 471 DNGRIVERGTHEELLAA-GGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 245 bits (629), Expect = 4e-75
Identities = 89/214 (41%), Positives = 126/214 (58%), Gaps = 44/214 (20%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IE + VSF YP RP + +++ L+I G+ VA+VG SGSGKST++ L+ R YDP SG +
Sbjct: 1 IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAH 1159
L+D ++L L LR+ + V Q+P LF+ TIR NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 1160 NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQ 1219
LSGGQ+QRIAIARA+L++P IL+LDEATSALD E+E ++
Sbjct: 97 --------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALIL 136
Query: 1220 DALERVMVNRTTVVVAHRLTTIKNADIIAVVKNG 1253
+AL + +T +V+AHRL+TI++AD I V+ +G
Sbjct: 137 EALRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 247 bits (634), Expect = 1e-69
Identities = 136/428 (31%), Positives = 223/428 (52%), Gaps = 21/428 (4%)
Query: 183 FFGGFVVALAR-GWFLALVLLACLPAIVIAGGSMALIMSKMSSRG-QIAYSEAGTVVEQT 240
F F++ +A G L V L +P I++ G + +S+++ + + +VE +
Sbjct: 272 FALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVE-S 330
Query: 241 VSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGV-LMLTVIGTYGLAVWY 299
+SG+ T+ + E + ++ + R+ ++ +S + + + + + V
Sbjct: 331 LSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVV- 389
Query: 300 GSKLIIEKGYNGGTVINVIMAIMTGG---MSLGQTSPCLNAFAGGQAA--AYKMFETIKR 354
G LI + T+ +I +M G LGQ + Q A A + + + +
Sbjct: 390 GVYLISD---GELTMGGLIACVMLSGRALAPLGQLA---GLLTRYQQAKTALQSLDELMQ 443
Query: 355 KPKIDPYDTSGITLEKIEGEIELRDVYFRYP--ARPEVQIFAGFSLHVPSGTTAALVGQS 412
P P T + +++GEIE R+V F YP P + SL + G A++G+
Sbjct: 444 LPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNV---SLTIRPGEKVAIIGRI 500
Query: 413 GSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIA 472
GSGKST++ L+ Y P G VL+DG+DI+++ +R IG V Q+P LF +LR+NIA
Sbjct: 501 GSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIA 560
Query: 473 YGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNP 532
G A D+EI A ELA +F+ + P GLD GE G LSGGQ+Q +A+ARA+L++P
Sbjct: 561 LGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDP 620
Query: 533 KILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEK 592
ILLLDE TSA+D SE +D L + + +T V+V HR + + D I V+ G+IV
Sbjct: 621 PILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVAD 680
Query: 593 GTHDELIK 600
G D++++
Sbjct: 681 GPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 245 bits (626), Expect = 1e-69
Identities = 159/453 (35%), Positives = 247/453 (54%), Gaps = 39/453 (8%)
Query: 178 QLMSTFFGGFV---VALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIA----Y 230
Q ++TF F+ A A W L++VL+ ++ L+M + + GQ A Y
Sbjct: 136 QHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIA---KLVMQR-TKNGQAAVEHHY 191
Query: 231 SEAGTVVEQTVSGIRTVSSF---TGEKQAIEKYNNKLQVA-YRAAVQQGMVSGIG----- 281
V ++S + V S+ E A++++ N L A Y + SG+
Sbjct: 192 HNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMAST 251
Query: 282 LGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVI--MAIMTGGMSLGQTSPCLNAFA 339
+ ++ + VIGT L+I+ + G VI I ++ G L Q S +
Sbjct: 252 ISMMCILVIGTV---------LVIKGELSVGEVIAFIGFANLLIG--RLDQMSGFITQIF 300
Query: 340 GGQAAAYKMFETIKR-KPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSL 398
+A F+ + +P D L ++G +E R + F + Q S
Sbjct: 301 EARAKLEDFFDLEDSVFQREEPADAP--ELPNVKGAVEFRHITFEFAN--SSQGVFDVSF 356
Query: 399 HVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQ 458
+G T A+VG +G+GK+T+I+L++R YDP G++LIDGIDI + + +R+ I V Q
Sbjct: 357 EAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQ 416
Query: 459 EPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQ 518
+ LF S+RENI G+E ATD+E+ A + A A FI K G DT+ GE G +LSGG+
Sbjct: 417 DAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGE 476
Query: 519 KQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNA 578
+QR+AIARAILKN IL+LDEATSALD E+E V++A+ + +RTT ++AHRL+T+RNA
Sbjct: 477 RQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNA 536
Query: 579 DLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVR 611
DL+ + QG+++EKG+ ELI+ +G + +L+R
Sbjct: 537 DLVLFLDQGRLIEKGSFQELIQK-DGRFYKLLR 568
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 243 bits (623), Expect = 2e-69
Identities = 162/600 (27%), Positives = 268/600 (44%), Gaps = 75/600 (12%)
Query: 50 AVLMIVGTISAI-----GSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLA 104
+ ++ +S I + LA LI G L ++ + + +
Sbjct: 3 VISALLAVLSGIAIIAQAALLADILTKLIEGQL--------FQSLLPLLILLLIAL---- 50
Query: 105 AGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTIL 164
A+L+ + +R L L + + F + G + I
Sbjct: 51 VLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLG-PAFIAQKPAGSAATLAL-EGI- 107
Query: 165 IQEAMGEKVGKFI-QLMSTFFGGFVVALARGWF---LALVLLACLPAIVIAGGSMALIM- 219
E + +++ Q+ + ++ +A +F AL+LL P I + M L+
Sbjct: 108 --EQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPL---FMILVGL 162
Query: 220 -SKMSSRGQI-AYSEAGTVVEQTVSGIRTVSSF-TGEKQAIEKYNNKLQVAYRAAVQQGM 276
+K +S Q A + + G+ T+ +F E + +R A M
Sbjct: 163 AAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSED--FRKAT---M 217
Query: 277 -VSGIG-LGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPC 334
V I L +L +A+ V + G ++L
Sbjct: 218 SVLRIAFLSSAVLEFFAYLSIAL--------------VAVYIGFRLLGEGDLTLFAGLFV 263
Query: 335 L-----------------NAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIEL 377
L +A A G+AAA K+F ++ + EI L
Sbjct: 264 LILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISL 323
Query: 378 RDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLID 437
++ FRYP + +L + +G ALVG SG+GKST+++L+ F P GE+ ++
Sbjct: 324 ENLSFRYPDGKPA--LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVN 381
Query: 438 GIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFID 497
GID++ L + R++I VSQ P LFA ++RENI + +A+D+EI A++ A +F+
Sbjct: 382 GIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVP 441
Query: 498 KLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALV 557
K P GLDT+ GE G LSGGQ QR+A+ARA+L +LLLDE T+ LDAE+E+I+ AL
Sbjct: 442 K-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQ 500
Query: 558 KIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSK 617
++ +T +V+ HRL +AD I V+ G++VE+GTH+EL + +G Y L++ QEG +
Sbjct: 501 ELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQEGRR 559
|
Length = 559 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 243 bits (621), Expect = 6e-69
Identities = 185/592 (31%), Positives = 304/592 (51%), Gaps = 53/592 (8%)
Query: 705 RRLAYLNKPEFPVLLI--GSIAAGIHGVIFPI-FGLLLSSSIRMFFEPEDKLRKDSRFWA 761
R L+YLN + VLLI +I + PI FG ++ + + D
Sbjct: 9 RALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISS---------KSDVLPTL 59
Query: 762 LIYLVLGIINLIAVPFQNYFFGVAGG--KLI--RRIRSLT--FEKVVHQEISWFDDPANS 815
++ G+ N IA + VA +L RR LT F +++ +SW S
Sbjct: 60 ALWAGFGVFNTIA------YVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTS 113
Query: 816 SGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLII---AFTANWILAFVILAVSPL 872
+ L T +L G L + Q++AT A ++ AF +W L+ V++ + L
Sbjct: 114 NA-----LHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGIL 168
Query: 873 MLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASF---CSEEKVMDLYEKK- 928
++ + K A + Y + +D++ ++ V S+ +E + +
Sbjct: 169 YILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNL 228
Query: 929 --CEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQV--FKVFF 984
+ P+ + + SG S + + C IG+VLV G+ + G+V F F
Sbjct: 229 LSAQYPVLDW--WALASGLNRMASTISMMCI----LVIGTVLVIKGELSVGEVIAFIGFA 282
Query: 985 ALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRC 1044
L I L Q S +A+ F++ DS + + D L +V GA+E R
Sbjct: 283 NLLIGRL--DQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAP-ELPNVKGAVEFRH 339
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI 1104
++F++ Q ++ +G+TVA+VG +G+GK+T+I L++R YDP G +L+D I
Sbjct: 340 ITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGI 397
Query: 1105 ELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISA 1164
++ LR+ + V Q+ LFN +IR NI G++G AT+EE+ A +A+ AH+FI
Sbjct: 398 DINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG-ATDEEVYEAAKAAAAHDFILK 456
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224
+GY+T VGERG +LSGG++QR+AIARA+LKN IL+LDEATSALD E+E V++A++
Sbjct: 457 RSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDA 516
Query: 1225 VMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLV 1276
+ NRTT ++AHRL+T++NAD++ + G + E+GS L++ DG + L+
Sbjct: 517 LRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQ-KDGRFYKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 236 bits (604), Expect = 8e-67
Identities = 126/480 (26%), Positives = 228/480 (47%), Gaps = 39/480 (8%)
Query: 151 TGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVI 210
+G+++ R+ D + ++++++ V+ + L + A+++
Sbjct: 114 SGDLLNRLVADVDALDNL-------YLRVIAPAVVALVLIAVVT--IGLSFFSIPLALLL 164
Query: 211 AGGSMA--LIMSKMSSR-----GQIAYSEAGTVVEQT---VSGIRTVSSFTGEKQAIEKY 260
+ LI+ + R G + Q V G + F E
Sbjct: 165 GLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTAL 224
Query: 261 NNKLQVAYRAAVQQ---GMVSGIGLGVL-MLTVIGTYGLAVWYGSKLIIEKGYNGGTVIN 316
+A +Q +S L ++ L VIG L +W + + G
Sbjct: 225 EATEASWLKAQRKQARFTGLSDAILLLIAGLLVIG---LLLWMAA----QVGAGALAQPG 277
Query: 317 VIMAIMTGGMSLGQTSPCLN-AFA---GGQAAAYKMFETIKRKPKIDPYDTSGITLEKIE 372
+A++ +L P AF A+A ++ + + +KP++ D T +
Sbjct: 278 AALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQA- 336
Query: 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
+ELR+V F YP + + F+L + G A++G+SGSGKST++ L+ +DP G
Sbjct: 337 --LELRNVSFTYPG-QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQG 393
Query: 433 EVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANA 492
+ ++G++I L + +RE I +++Q LF+ +LR+N+ +A+D+E+ A++
Sbjct: 394 SITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGL 453
Query: 493 AKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIV 552
K ++ P GL+T GE G +LSGG+++R+A+ARA+L + + LLDE T LD +ER V
Sbjct: 454 EKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQV 513
Query: 553 QDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRL 612
L + +T ++V HRL + D I V+ GKI+E+GTH EL+ + G Y +L +L
Sbjct: 514 LALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQL 572
|
Length = 573 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 222 bits (567), Expect = 4e-66
Identities = 93/221 (42%), Positives = 135/221 (61%), Gaps = 1/221 (0%)
Query: 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
G IE R+V F YP + + SL + +G A++G+ GSGKST++ L+ Y P +G
Sbjct: 1 GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 433 EVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANA 492
VL+DG DI++L +R IG V Q+ LF +LR+NI G A D+ I A ELA
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 493 AKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIV 552
F++K P GLD GE G LSGGQ+Q +A+ARA+L +P ILLLDE TSA+D SE +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 553 QDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKG 593
++ L +++ +T +++ HR + + D I V+ G+IV G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 235 bits (603), Expect = 2e-65
Identities = 155/518 (29%), Positives = 258/518 (49%), Gaps = 28/518 (5%)
Query: 762 LIYLVLGIINLIAVPF-------QNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPAN 814
L L +G+ +A+ F ++YF VAG K + + FE+V+ + PA
Sbjct: 186 LWVLAIGVA--LAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRME--ARPA- 240
Query: 815 SSGSVGARLSTDASTIRSLVGD-SLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLM 873
S GS +L + ++R +L ++ + L+IA L +V L PL+
Sbjct: 241 SVGSFANQLR-EFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGP-LVWVPLVAIPLI 298
Query: 874 LVQGYTQTKFMKG-FSADAKLMYEEASQ---VANDAVGSIRTVASFCSEEKVMDLYEKKC 929
L+ G ++ S A+ E++Q V +++ + T+ + +E + +E+
Sbjct: 299 LLPGL----LLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTV 354
Query: 930 EGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTIS 989
++G++ LS F+ + + +G L+ G+ T G + L+
Sbjct: 355 AALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVM-LSGR 413
Query: 990 ALG-VSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFK 1048
AL + Q + + +AK + S+ E++ P + + G IE R VSF
Sbjct: 414 ALAPLGQLAGLLTRYQQAKTALQSLDELM-QLPVERPEGTRFLHRPRLQGEIEFRNVSFA 472
Query: 1049 YPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPK 1108
YP + + N+ L+I G+ VA++G GSGKST++ L+ Y P G VLLD +++ +
Sbjct: 473 YPGQETPAL-DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531
Query: 1109 FKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHG 1168
+ LR+ +G V Q+P LF T+R NIA G A +EEI+ A E + F+ P G
Sbjct: 532 IDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPY-ADDEEILRAAELAGVTEFVRRHPDG 590
Query: 1169 YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN 1228
+ +GERG LSGGQ+Q +A+ARA+L++P ILLLDE TSA+D SE +D L+R +
Sbjct: 591 LDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAG 650
Query: 1229 RTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMK 1266
+T V+V HR + + D I V+ NG I G D +++
Sbjct: 651 KTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 228 bits (584), Expect = 3e-64
Identities = 116/324 (35%), Positives = 173/324 (53%), Gaps = 21/324 (6%)
Query: 962 FYIGSVLVEHGKATFGQVFKVFFALTISA--------LGVSQTSAMAPDTTKAKDSAASI 1013
YIG L+ G T F F L ++ LG +A A + +A +
Sbjct: 243 VYIGFRLLGEGDLTL---FAGLFVLILAPEFFQPLRDLGSFFHAAAA-----GEAAADKL 294
Query: 1014 FEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVAL 1073
F +L+S S ++ + I L +SF+YP +L L+I +G+ AL
Sbjct: 295 FTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLTIKAGQLTAL 352
Query: 1074 VGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIR 1133
VG SG+GKST++ L+ F P G + ++ I+L R+Q+ VSQ P LF TIR
Sbjct: 353 VGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIR 412
Query: 1134 TNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193
NI + A++EEIIAA + + F+ P G +T +GE G LSGGQ QR+A+ARA
Sbjct: 413 ENILLAR-PDASDEEIIAALDQAGLLEFV-PKPDGLDTVIGEGGAGLSGGQAQRLALARA 470
Query: 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNG 1253
+L +LLLDE T+ LDAE+E+++ AL+ + +T +V+ HRL +AD I V+ NG
Sbjct: 471 LLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNG 530
Query: 1254 VIAEQGSHDALMKITDGAYASLVA 1277
+ EQG+H+ L G YA+L+
Sbjct: 531 RLVEQGTHEELS-EKQGLYANLLK 553
|
Length = 559 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 9e-64
Identities = 103/291 (35%), Positives = 150/291 (51%), Gaps = 12/291 (4%)
Query: 963 YIGSVLVEHGKATFGQVFKVFFALTISA---LGVSQTSAMAPDTTKAKDSAASIFEILDS 1019
YIG L+ G F L ++ L + Q A +A ++F +LD+
Sbjct: 248 YIGFRLL-AGDLDL---ATGLFVLLLAPEFYLPLRQLGAQYHARADGVAAAEALFAVLDA 303
Query: 1020 KPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGS 1079
P+ + K + ++E VS YP R R + ++P G+ VALVG SG+
Sbjct: 304 APRPLAGKAPVTAAPAP--SLEFSGVSVAYPGRRPA--LRPVSFTVPPGERVALVGPSGA 359
Query: 1080 GKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG 1139
GKST++ L+ F DP G + ++ + L R Q+ V Q P LF TI NI
Sbjct: 360 GKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLA 419
Query: 1140 KQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPK 1199
+ A++ EI A E + F++ALP G +T +GE G LSGGQ QR+A+ARA L++
Sbjct: 420 -RPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAP 478
Query: 1200 ILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVV 1250
+LLLDE T+ LDAE+E V +AL + RT ++V HRL AD I V+
Sbjct: 479 LLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 226 bits (577), Expect = 1e-63
Identities = 98/248 (39%), Positives = 135/248 (54%), Gaps = 4/248 (1%)
Query: 337 AFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGF 396
A A G AAA +F + P+ +E V YP R
Sbjct: 286 ARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPS--LEFSGVSVAYPGRRPA--LRPV 341
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLV 456
S VP G ALVG SG+GKST+++L+ F DP G + ++G+ + R++I V
Sbjct: 342 SFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWV 401
Query: 457 SQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSG 516
Q P LFA ++ ENI + +A+D EIR A+E A +F+ LP+GLDT GE G LSG
Sbjct: 402 PQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSG 461
Query: 517 GQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIR 576
GQ QR+A+ARA L++ +LLLDE T+ LDAE+E V +AL + RT ++V HRL
Sbjct: 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAA 521
Query: 577 NADLIAVV 584
AD I V+
Sbjct: 522 LADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 214 bits (547), Expect = 3e-63
Identities = 89/222 (40%), Positives = 138/222 (62%), Gaps = 2/222 (0%)
Query: 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
G IE R VSF YP + + N+ L+I +G+ VA++G GSGKST++ L+ Y P SG
Sbjct: 1 GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASN 1157
VLLD ++ + + LR+ +G V Q+ LF T+R NI G A +E I+ A E +
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPL-ADDERILRAAELAG 118
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
+F++ P+G + +GERG LSGGQ+Q +A+ARA+L +P ILLLDE TSA+D SE
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 1218 VQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQG 1259
+++ L +++ ++T +++ HR + + D I V+ +G I G
Sbjct: 179 LKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 4e-63
Identities = 157/550 (28%), Positives = 257/550 (46%), Gaps = 76/550 (13%)
Query: 103 LAAGTGIAAFLQVSCWMVTGERQ----------ATRIRGLYLKTILRQDIGFFDTETTTG 152
L G G+ A LQ ++T + A + +L ILR + FF + G
Sbjct: 196 LLLGMGLTALLQ---GVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFA-QRHAG 251
Query: 153 EVIGRMSGDTILIQEAMGEKVGKFI--QLMSTFFGGFVVALARGWFLALVLLA-----CL 205
++ R+ + ++V +F+ QL +T ++ F AL++L L
Sbjct: 252 DIASRVQ---------LNDQVAEFLSGQLATTALDAVMLV-----FYALLMLLYDPVLTL 297
Query: 206 PAIVIAGGSMALIMSKMSSR---GQIAYSEAGTVVEQTVSGIRTVSSFT---GEKQAIEK 259
I A ++ + R + +AG + +SG++++ + E +
Sbjct: 298 IGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSR 357
Query: 260 YNNKLQVAYRAAVQQGMVSGIGLGVL--MLTVIGTYGLAVWYGSKLIIEKGYNGGTVINV 317
+ A + G+++ I LGVL +LT + L + G ++E G ++
Sbjct: 358 WAGYQAKLLNAQQELGVLTQI-LGVLPTLLTSL-NSALILVVGGLRVMEGQLTIGMLV-A 414
Query: 318 IMAIM-------TGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPY-------DT 363
++M + G T L G + + R P +DP
Sbjct: 415 FQSLMSSFLEPVNNLVGFGGT---LQELEGD----LNRLDDVLRNP-VDPLLEEEEAPAA 466
Query: 364 SGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLV 423
++ G +ELR++ F Y + E + FSL + G ALVG SGSGKST+ LV
Sbjct: 467 GSEPSPRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLV 525
Query: 424 ERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEI 483
Y P +GE+L DGI +++ + + + +V Q+ LF ++R+N+ D ++
Sbjct: 526 AGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADL 585
Query: 484 RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSA 543
A + A I P G D E G LSGGQ+QR+ IARA+++NP IL+LDEATSA
Sbjct: 586 VRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSA 645
Query: 544 LDAESERIVQDALVKIMTSR--TTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKD 601
LD E+E+I+ D L + R T ++VAHRL+TIR+ D I V+ +GK+V++GTH+EL
Sbjct: 646 LDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEEL-WA 700
Query: 602 PEGPYTQLVR 611
G Y +L+R
Sbjct: 701 VGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 212 bits (543), Expect = 1e-62
Identities = 82/223 (36%), Positives = 142/223 (63%), Gaps = 4/223 (1%)
Query: 373 GEIELRDVYFRYPARPEVQ-IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA 431
G+IE ++V RY RP + + S + G +VG++GSGKS+++ + R + +
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 432 GEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELAN 491
G +LIDG+DI K+ L +R +I ++ Q+P+LF+ ++R N+ E +D+E+ A+E
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVG 117
Query: 492 AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI 551
+F++ LP GLDT+ E G LS GQ+Q + +ARA+L+ KIL+LDEAT+++D E++ +
Sbjct: 118 LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177
Query: 552 VQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGT 594
+Q + + T + +AHRL TI ++D I V+ +G++VE +
Sbjct: 178 IQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 223 bits (572), Expect = 2e-62
Identities = 133/463 (28%), Positives = 226/463 (48%), Gaps = 55/463 (11%)
Query: 176 FIQLMSTFFGGFVVALARGWFLA--------------LVLLACLPAIVIAGG---SMALI 218
+++L+S VV L L+ L+LL LP + G L
Sbjct: 134 YLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLT 193
Query: 219 MSKMSSRGQI-----AYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQ 273
+ R Q+ +E ++ F E + ++ Q A +
Sbjct: 194 HLRAQYRVQLTEWLQGQAE--------------LTLFGAEDRYRQQLEQTEQQWLAAQRR 239
Query: 274 QGMVSGIGLGVLMLTVIGTYGLAV----WYGSKLIIEKGYNGGTVINVIMAIMTGGMSLG 329
Q ++G+ +++L GL V W + + G + + A + +L
Sbjct: 240 QANLTGLSQALMILA----NGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALM 295
Query: 330 QTSPCLNAFAG-GQ--AAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPA 386
P AF GQ A+A ++ E ++KP++ + T+ T + + L +V F YP
Sbjct: 296 ---PVAGAFQHLGQVIASARRINEITEQKPEVT-FPTTS-TAAADQVSLTLNNVSFTYPD 350
Query: 387 RPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL 446
+P+ + G SL + +G AL+G++G GKST++ L+ R +DP GE+L++G I
Sbjct: 351 QPQ-PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSE 409
Query: 447 KWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTM 506
+R+ I +VSQ LF+ +LR+N+ NA+D+ + ++ K ++ KGL+
Sbjct: 410 AALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAW 468
Query: 507 AGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTV 566
GE G QLSGG+++R+ IARA+L + +LLLDE T LDAE+ER + + L + ++T +
Sbjct: 469 LGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVL 528
Query: 567 VVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQL 609
++ HRLT + D I V+ G+I+E+GTH EL+ +G Y QL
Sbjct: 529 MITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ-QGRYYQL 570
|
Length = 574 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 233 bits (596), Expect = 3e-62
Identities = 182/638 (28%), Positives = 294/638 (46%), Gaps = 142/638 (22%)
Query: 765 LVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLS 824
+++GI I ++ V K+++ ++ + V +Q+ + D+ + G++L+
Sbjct: 104 VLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDN------NPGSKLT 157
Query: 825 TDASTIRSLVGDSLALVVQNIATIAA---GLII-AFTANWILAFVILAVSPLMLVQGYTQ 880
+D V + I T A+ GL I + N L I V PL+ + G
Sbjct: 158 SDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVIC 217
Query: 881 TKFMKGFSADAKLMYEEAS-QVANDAVGSIRTVASFCSEEKVMD-------LYEKKCEGP 932
K +K + L+Y + + +A+ IRTV S+C E+ ++ LY K
Sbjct: 218 NKKVK-INKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI--- 273
Query: 933 LKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLV------EHGKATF--GQVFKVFF 984
LK + G GF L Y AF F+ G+ ++ + F G V +
Sbjct: 274 LKANFMESLHIGMINGF-ILASY---AFGFWYGTRIIISDLSNQQPNNDFHGGSVISILL 329
Query: 985 ALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRC 1044
+ IS ++ + K+ ++ S++EI++ KP ++++ D G L + I+ +
Sbjct: 330 GVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDD-GKKLKDIK-KIQFKN 387
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLL-DN 1103
V F Y TR DV+I+++L ++ GKT A VGESG GKST++ LIER YDP G +++ D+
Sbjct: 388 VRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDS 447
Query: 1104 IELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG---------------KQGGATEE- 1147
L L W R ++G+VSQ+P+LF+ +I+ NI Y + G ++E
Sbjct: 448 HNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQEN 507
Query: 1148 ----------------------------------EIIAATEASNA------HNFISALPH 1167
+ I +E + H+F+SALP
Sbjct: 508 KNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPD 567
Query: 1168 GYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM- 1226
YET VG +LSGGQKQRI+IARA+++NPKIL+LDEATS+LD +SE +VQ + +
Sbjct: 568 KYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKG 627
Query: 1227 -VNRTTVVVAHRLTTIKNADIIAVVKN--------------------------------- 1252
NR T+++AHRL+TI+ A+ I V+ N
Sbjct: 628 NENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNN 687
Query: 1253 --------------GVIAEQGSHDALMKITDGAYASLV 1276
I EQG+HDALMK +G Y +++
Sbjct: 688 NNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMI 725
|
Length = 1466 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 4e-62
Identities = 167/606 (27%), Positives = 281/606 (46%), Gaps = 63/606 (10%)
Query: 33 NQKVPFYKLFAFADK---QD-AVLMIVGTISAIGSGLAHPFMTLIFGHLINSF-GSSDRS 87
++ + L FA + +D ++ +G + + G+ P T G LI + +DRS
Sbjct: 118 DKALGLRDLLRFALRGARRDLLAILAMGLLGTL-LGMLVPIAT---GILIGTAIPDADRS 173
Query: 88 HVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTI--------LR 139
+V +A AA + + + R+ ++ LR
Sbjct: 174 LLVQ-----------IALALLAAAVGAAA-FQLAQSLAVLRLETRMDASLQAAVWDRLLR 221
Query: 140 QDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGF--VVALARGWFL 197
+ FF + +TG++ R G + I+ + L+S F + W L
Sbjct: 222 LPVSFF-RQYSTGDLASRAMGIS-QIRRILSGST--LTTLLSGIFALLNLGLMFYYSWKL 277
Query: 198 ALV-LLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQA 256
ALV + L AI + L+ + R + + Q ++GI + E +A
Sbjct: 278 ALVAVALALVAIAVTLVL-GLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRA 336
Query: 257 I----EKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGG 312
+ ++ + ++ A + +++ + +LT + A+ G
Sbjct: 337 FARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLG--------GAG 388
Query: 313 TVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKR-KPKIDP---YDTSGITL 368
+ +A T + G S + + + + +R KP ++ D +
Sbjct: 389 LSLGSFLAFNT---AFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDP 445
Query: 369 EKIEGEIELRDVYFRYPARPE-VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFY 427
K+ G IE+ V FRY RP+ I SL + G A+VG SGSGKST++ L+ F
Sbjct: 446 GKLSGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503
Query: 428 DPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAI 487
P++G V DG D+ L ++ +R ++G+V Q L + S+ ENIA G T E A
Sbjct: 504 TPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA-GGAPLTLDEAWEAA 562
Query: 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
+A A+ I +P G+ T+ E G LSGGQ+QR+ IARA+++ P+ILL DEATSALD
Sbjct: 563 RMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNR 622
Query: 548 SERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYT 607
++ IV ++L ++ +R +V+AHRL+TIRNAD I V+ G++V++GT+DEL+ EG +
Sbjct: 623 TQAIVSESLERLKVTR--IVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFA 679
Query: 608 QLVRLQ 613
QL R Q
Sbjct: 680 QLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 219 bits (561), Expect = 7e-61
Identities = 83/225 (36%), Positives = 142/225 (63%), Gaps = 3/225 (1%)
Query: 388 PEVQIFAG-FSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL 446
P+ + AG + +P+G ALVG SG+GK+++++ + F P G + I+GI++++L
Sbjct: 360 PDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDP 418
Query: 447 KWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTM 506
+ R+ + V Q P L +LR+N+ G +A+D++++ A+E A ++F+ LP+GLDT
Sbjct: 419 ESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTP 478
Query: 507 AGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTV 566
G+ LS GQ QR+A+ARA+L+ ++LLLDE T++LDA SE++V AL +TT+
Sbjct: 479 IGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTL 538
Query: 567 VVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVR 611
+V H+L + D I V+ G+IV++G + EL + G + L+
Sbjct: 539 MVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAG-GLFATLLA 582
|
Length = 588 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 6e-60
Identities = 96/267 (35%), Positives = 147/267 (55%), Gaps = 6/267 (2%)
Query: 1009 SAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSG 1068
SA I EI + KP++ ++ L VSF YP +P + + L L I +G
Sbjct: 310 SARRINEITEQKPEVTFPTTSTAAADQ--VSLTLNNVSFTYPDQPQ-PVLKGLSLQIKAG 366
Query: 1069 KTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLF 1128
+ VAL+G +G GKST++ L+ R +DP G +LL+ + + + LRQ + +VSQ LF
Sbjct: 367 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLF 426
Query: 1129 NETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRI 1188
+ T+R N+ A++E +I + + G +GE G QLSGG+++R+
Sbjct: 427 SATLRDNLLLAAPN-ASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRL 484
Query: 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIA 1248
IARA+L + +LLLDE T LDAE+ER + + L N+T +++ HRLT ++ D I
Sbjct: 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRIC 544
Query: 1249 VVKNGVIAEQGSHDALMKITDGAYASL 1275
V+ NG I EQG+H L+ G Y L
Sbjct: 545 VMDNGQIIEQGTHQELLA-QQGRYYQL 570
|
Length = 574 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 203 bits (520), Expect = 1e-59
Identities = 84/225 (37%), Positives = 141/225 (62%), Gaps = 7/225 (3%)
Query: 1038 GAIELRCVSFKYPTRPDVQ-IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS 1096
G IE + VS +Y RP++ + +N+ SI G+ V +VG +GSGKS+++ + R + S
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 1097 GHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIA-YGKQGGATEEEIIAATEA 1155
G +L+D +++ K L LR ++ ++ Q+PVLF+ TIR+N+ +G+ ++EE+ A E
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE---YSDEELWQALER 115
Query: 1156 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE 1215
F+ +LP G +T V E G LS GQ+Q + +ARA+L+ KIL+LDEAT+++D E++
Sbjct: 116 VGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175
Query: 1216 RVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGS 1260
++Q + + T + +AHRL TI ++D I V+ G + E S
Sbjct: 176 ALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 7e-59
Identities = 134/479 (27%), Positives = 228/479 (47%), Gaps = 35/479 (7%)
Query: 816 SGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLV 875
+G + +R+ + L G LA + + ++ + +L + +A + + ++
Sbjct: 250 AGDIASRVQLNDQVAEFLSGQ-LATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVL 308
Query: 876 QGYTQTKFMKGFSADAKLMYEEA--SQVANDAVGSIRTVASFCSEE----KVMDLYEKKC 929
Q + A+ +L + + VA + SI T+ + E + K
Sbjct: 309 --ALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLL 366
Query: 930 EGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTIS 989
+ GV IL + L +A +G + V G+ T G + F +L S
Sbjct: 367 NAQQELGVLTQILGVLPTLLTSL----NSALILVVGGLRVMEGQLTIGMLV-AFQSLMSS 421
Query: 990 ALG--------VSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMT-LSSVGGAI 1040
L + D + D + + L + + ++ E LS G +
Sbjct: 422 FLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLS---GYV 478
Query: 1041 ELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVL 1100
ELR ++F Y + + + N L++ G+ VALVG SGSGKST+ L+ Y P SG +L
Sbjct: 479 ELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537
Query: 1101 LDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHN 1160
D I + L + +V Q+ LF T+R N+ + +++ A + + H+
Sbjct: 538 FDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLW-DPTIPDADLVRACKDAAIHD 596
Query: 1161 FISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQD 1220
I++ P GY+ + E G LSGGQ+QR+ IARA+++NP IL+LDEATSALD E+E+++ D
Sbjct: 597 VITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDD 656
Query: 1221 ALERVMVNR--TTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVA 1277
L R R T ++VAHRL+TI++ D I V++ G + ++G+H+ L GAYA L+
Sbjct: 657 NLRR----RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWA-VGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 212 bits (543), Expect = 9e-59
Identities = 129/462 (27%), Positives = 212/462 (45%), Gaps = 25/462 (5%)
Query: 815 SSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFT-----ANWILAFVI-LA 868
SG + RL D + D+L L V A +A LI T + LA ++ L
Sbjct: 113 RSGDLLNRLVADVDAL-----DNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLI 167
Query: 869 VSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKK 928
+ L+L+ + + F A D V + F +E+ E
Sbjct: 168 LLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEAT 227
Query: 929 CEGPLKNGVRRGILSG-AGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALT 987
LK ++ +G + + ++ + V G Q L
Sbjct: 228 EASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAA-QVGAGALA--QPGAALALLV 284
Query: 988 ISALGVSQTSAMAP----DTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELR 1043
I A + +AP + SA + +ILD KP++ ++ T G A+ELR
Sbjct: 285 IFAA-LEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATT---GQALELR 340
Query: 1044 CVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDN 1103
VSF YP + + +N L++ G+ VA++G SGSGKST++ L+ +DP G + L+
Sbjct: 341 NVSFTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG 399
Query: 1104 IELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFIS 1163
+E+ LR+ + +++Q LF+ T+R N+ A++EE+ AA + +
Sbjct: 400 VEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPD-ASDEELWAALQQVGLEKLLE 458
Query: 1164 ALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALE 1223
+ P G T +GE G +LSGG+++R+A+ARA+L + + LLDE T LD +ER V L
Sbjct: 459 SAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF 518
Query: 1224 RVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 1265
+T ++V HRL ++ D I V+ NG I E+G+H L+
Sbjct: 519 EHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELL 560
|
Length = 573 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 213 bits (544), Expect = 8e-58
Identities = 151/535 (28%), Positives = 249/535 (46%), Gaps = 72/535 (13%)
Query: 109 IAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEA 168
I +++Q+ V G+R + I Y+K + + FF T T GE++ R + D I +A
Sbjct: 211 ILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRT-GEIVSRFT-DASSIIDA 268
Query: 169 MGEKV-GKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQ 227
+ + F+ + G + L LL+ +P + +K++
Sbjct: 269 LASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLS-IPVYAVIIILFKRTFNKLNHDAM 327
Query: 228 IAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEK-------YNNK-LQVAYRAAVQQGMVSG 279
A + + + + ++GI T+ S T E + K Y NK + QQ + +
Sbjct: 328 QANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAV 387
Query: 280 IGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQ--------- 330
L +L V+ +W G+ L+ M G ++LGQ
Sbjct: 388 TKL---ILNVV-----ILWTGAYLV-----------------MRGKLTLGQLITFNALLS 422
Query: 331 --TSP---CLNAFAGGQAA---------AYKMFETIKRKPKIDPYDTSGITLEKIEGEIE 376
+P +N QAA Y + K K L + G+I
Sbjct: 423 YFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRT-------ELNNLNGDIV 475
Query: 377 LRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLI 436
+ DV + Y I + SL + + +VG SGSGKST+ L+ F+ +GE+L+
Sbjct: 476 INDVSYSYGYGSN--ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533
Query: 437 DGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYG-KENATDQEIRTAIELANAAKF 495
+G +K + +R+ I + QEP +F+ S+ EN+ G KEN + EI A E+A
Sbjct: 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDD 593
Query: 496 IDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDA 555
I+ +P G T E G+ +SGGQKQRIA+ARA+L + K+L+LDE+TS LD +E+ + +
Sbjct: 594 IENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNN 653
Query: 556 LVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610
L+ + +T + VAHRL+ + +D I V+ GKI+E+G+HDEL+ G Y L+
Sbjct: 654 LLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR-NGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 3e-57
Identities = 113/310 (36%), Positives = 174/310 (56%), Gaps = 25/310 (8%)
Query: 965 GSVLVEHGKATFGQV--FKVFFALTI---SALG-----VSQTSAMAPDTTKAKDSAASIF 1014
GS +V +G T GQ+ F ++ L I AL V + SA + + I
Sbjct: 242 GSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSA----------AYSRIR 291
Query: 1015 EILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALV 1074
+L P + KD + G +++ F YP D N+ ++ G+ + +
Sbjct: 292 AMLAEAPVV---KDGSEPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGIC 347
Query: 1075 GESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRT 1134
G +GSGKST+++LI+R +D G + +I L K +L R ++ +VSQ P LF++T+
Sbjct: 348 GPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVAN 407
Query: 1135 NIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAV 1194
NIA G+ AT++EI ++ H+ I LP GY+T VGERGV LSGGQKQRI+IARA+
Sbjct: 408 NIALGRPD-ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARAL 466
Query: 1195 LKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGV 1254
L N +IL+LD+A SA+D +E + L + RT ++ AHRL+ + A I V+++G
Sbjct: 467 LLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGH 526
Query: 1255 IAEQGSHDAL 1264
IA++G+HD L
Sbjct: 527 IAQRGNHDQL 536
|
Length = 569 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 9e-57
Identities = 147/503 (29%), Positives = 263/503 (52%), Gaps = 53/503 (10%)
Query: 138 LRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFF------GGFVVAL 191
LRQ + FDT+ G++I R++ DT +I++ ++ +++T G +VA+
Sbjct: 109 LRQPLSAFDTQPV-GQLISRVTNDTEVIRDL-------YVTVVATVLRSAALIGAMLVAM 160
Query: 192 -ARGWFLALVLLACLPAIVIAGGSMALIMSKMSS------RGQIAYSEAGTVVEQTVSGI 244
+ W +ALV + PA+++ + +I + S+ R +A G + ++G+
Sbjct: 161 FSLDWRMALVAIMIFPAVLV----VMVIYQRYSTPIVRRVRAYLADINDG--FNEVINGM 214
Query: 245 RTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLI 304
+ F +QA ++ ++ A R+ M + G L+ ++ + + G L+
Sbjct: 215 SVIQQF--RQQA--RFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCG--LL 268
Query: 305 IEKGYNGGTVIN--VIMAIMTGGMSLGQTSPCLNAFAGGQA-------AAYKMFETIKRK 355
+ G++ I V+ A ++ LG+ + L Q+ A ++FE +
Sbjct: 269 MLFGFSASGTIEVGVLYAFIS---YLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDG- 324
Query: 356 PKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSG 415
P+ Y L+ G I++ +V F Y R + + +L VPS ALVG +GSG
Sbjct: 325 PR-QQYGNDDRPLQ--SGRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSG 379
Query: 416 KSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGK 475
KST+ SL+ +Y GE+ +DG + L +R+ + +V Q+P++ A + N+ G+
Sbjct: 380 KSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR 439
Query: 476 ENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKIL 535
+ +++++ A+E A+ LP GL T GE G LS GQKQ +A+AR +++ P+IL
Sbjct: 440 -DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQIL 498
Query: 536 LLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTH 595
+LDEAT+ +D+ +E+ +Q AL + T VV+AHRL+TI AD I V+H+G+ VE+GTH
Sbjct: 499 ILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTH 558
Query: 596 DELIKDPEGPYTQLVRLQEGSKE 618
+L+ +G Y Q+ +LQ +E
Sbjct: 559 QQLLAA-QGRYWQMYQLQLAGEE 580
|
Length = 592 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 2e-56
Identities = 126/338 (37%), Positives = 186/338 (55%), Gaps = 25/338 (7%)
Query: 947 FGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKA 1006
F VL T+A F L+ + G A + V+Q S
Sbjct: 364 FNAVLPVL--TSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISIL-- 419
Query: 1007 KDSAASIFE----ILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPD-VQIFRNL 1061
+ ++E IL++ P++D +K + LS GAIE+ V+F+Y RPD I ++
Sbjct: 420 --AVIPLWERAKPILEALPEVDEAKTDPGKLS---GAIEVDRVTFRY--RPDGPLILDDV 472
Query: 1062 CLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLV 1121
L I G+ VA+VG SGSGKST++ L+ F P+SG V D +L + +R+Q+G+V
Sbjct: 473 SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVV 532
Query: 1122 SQEPVLFNETIRTNIAYGKQGGA--TEEEIIAATEASNAHNFISALPHGYETNVGERGVQ 1179
Q L + +I NIA GGA T +E A + I A+P G T + E G
Sbjct: 533 LQNGRLMSGSIFENIA----GGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGT 588
Query: 1180 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLT 1239
LSGGQ+QR+ IARA+++ P+ILL DEATSALD ++ +V ++LER+ V R +V+AHRL+
Sbjct: 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTR--IVIAHRLS 646
Query: 1240 TIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVA 1277
TI+NAD I V+ G + +QG++D LM +G +A L
Sbjct: 647 TIRNADRIYVLDAGRVVQQGTYDELMA-REGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 212 bits (540), Expect = 2e-55
Identities = 221/925 (23%), Positives = 417/925 (45%), Gaps = 94/925 (10%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVIS--LVERFYDPDAG 432
I +++ YF + ++ + +L +P G+ A+VG +G GK+++IS L E + +
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674
Query: 433 EVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANA 492
V IR + V Q +F ++RENI +G + +++ R AI++
Sbjct: 675 VV--------------IRGSVAYVPQVSWIFNATVRENILFGSDFESERYWR-AIDVTAL 719
Query: 493 AKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIV 552
+D LP T GE G +SGGQKQR+++ARA+ N I + D+ SALDA V
Sbjct: 720 QHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQV 779
Query: 553 QDALVKI-MTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVR 611
D+ +K + +T V+V ++L + D I +V +G I E+GT EL K G + +
Sbjct: 780 FDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS--GSLFKKLM 837
Query: 612 LQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYG 671
G +A + T+ + + G ++ +S + GS G
Sbjct: 838 ENAGKMDATQEVNTNDENILK--------------LGPTVTIDVSERNLGSTKQ-----G 878
Query: 672 VPGPINVFETEEGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVI 731
G + + EE + G LM R ++ L + +LL+ + +
Sbjct: 879 KRGRSVLVKQEERETGIISWNVLM---RYNKAVGGLWVVM-----ILLVCYLTTEV---- 926
Query: 732 FPIFGLLLSSSIRMFFEPEDKLRKDSR--FWALIYLVLGIINLIAVPFQNYFFGVAGG-K 788
L +SSS + + K F+ ++Y +LG +AV F N F+ ++
Sbjct: 927 -----LRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGF-GQVAVTFTNSFWLISSSLH 980
Query: 789 LIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDS----LALVVQN 844
+R+ ++ + +F N +G V R S D I V + + + Q
Sbjct: 981 AAKRLHDAMLNSILRAPMLFFH--TNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQL 1038
Query: 845 IATIAAGLIIAFTANW-ILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVAN 903
++T A ++ + W I+ +IL + + Q T + + S +Y + + N
Sbjct: 1039 LSTFALIGTVSTISLWAIMPLLILFYAAYLYYQS-TSREVRRLDSVTRSPIYAQFGEALN 1097
Query: 904 DAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFY 963
+ SIR ++ K+ + N +R + + + + + L +
Sbjct: 1098 -GLSSIRAYKAYDRMAKINGKS-------MDNNIRFTLANTSSNRWLTIRLETLGGVMIW 1149
Query: 964 IGSV--LVEHGKATFGQVFK------VFFALTISAL--GVSQTSAMAPDTTKAKDSAASI 1013
+ + ++ +G A F + + L I+ L GV + ++ A ++ + + +
Sbjct: 1150 LTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNY 1209
Query: 1014 FEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQ-IFRNLCLSIPSGKTVA 1072
++ I + S G+I+ V +Y RP + + L + + V
Sbjct: 1210 IDLPSEATAIIENNRPVSGWPS-RGSIKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVG 1266
Query: 1073 LVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETI 1132
+VG +G+GKS+++ + R + + G +++D+ ++ KF L+ LR+ + ++ Q PVLF+ T+
Sbjct: 1267 VVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTV 1326
Query: 1133 RTNI-AYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIA 1191
R NI + + A ++ A E ++ + I P G + V E G S GQ+Q +++A
Sbjct: 1327 RFNIDPFSEHNDA---DLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLA 1383
Query: 1192 RAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVK 1251
RA+L+ KIL+LDEAT+++D ++ ++Q + + T +V+AHRL TI + D I V+
Sbjct: 1384 RALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLS 1443
Query: 1252 NGVIAEQGSHDALMKITDGAYASLV 1276
+G + E S L+ A+ +V
Sbjct: 1444 SGQVLEYDSPQELLSRDTSAFFRMV 1468
|
Length = 1495 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 1e-54
Identities = 78/218 (35%), Positives = 132/218 (60%), Gaps = 3/218 (1%)
Query: 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119
L ++P+G+ +ALVG SG+GK++++ + F P G + ++ IEL + R+ +
Sbjct: 368 PLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLS 426
Query: 1120 LVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQ 1179
V Q P L + T+R N+ G A++E++ A E + F+ LP G +T +G++
Sbjct: 427 WVGQNPQLPHGTLRDNVLLGNPD-ASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485
Query: 1180 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLT 1239
LS GQ QR+A+ARA+L+ ++LLLDE T++LDA SE++V AL +TT++V H+L
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE 545
Query: 1240 TIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVA 1277
+ D I V+++G I +QG + L + G +A+L+A
Sbjct: 546 DLAQWDQIWVMQDGQIVQQGDYAELSQ-AGGLFATLLA 582
|
Length = 588 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 7e-53
Identities = 101/253 (39%), Positives = 150/253 (59%), Gaps = 8/253 (3%)
Query: 1013 IFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVA 1072
+FE++D P+ D+ L S G I++ VSF Y R D + +N+ LS+PS VA
Sbjct: 318 VFELMDG-PRQQYGNDD-RPLQS--GRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVA 371
Query: 1073 LVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETI 1132
LVG +GSGKST+ +L+ +Y G + LD L S LRQ + +V Q+PV+ +T
Sbjct: 372 LVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTF 431
Query: 1133 RTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192
N+ G+ +EE++ A E +LP G T +GE+G LS GQKQ +A+AR
Sbjct: 432 LANVTLGRD--ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALAR 489
Query: 1193 AVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKN 1252
+++ P+IL+LDEAT+ +D+ +E+ +Q AL V + T VV+AHRL+TI AD I V+
Sbjct: 490 VLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHR 549
Query: 1253 GVIAEQGSHDALM 1265
G EQG+H L+
Sbjct: 550 GQAVEQGTHQQLL 562
|
Length = 592 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 194 bits (495), Expect = 8e-53
Identities = 121/449 (26%), Positives = 203/449 (45%), Gaps = 54/449 (12%)
Query: 151 TGEVIGRMSGDTILIQEAMGEKVGKFIQ-LMSTFFGGFVVALARGWFL---ALVLLACLP 206
G+++GR+ D +A+ + + I G A AL+L A L
Sbjct: 109 RGDLLGRLGADV----DALQDLYVRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGLL 164
Query: 207 AIVIAGGSMALIMSKMS------SRGQIAYSEAGTVV----EQTVSG-----IRTVSSFT 251
++L ++ + RG++ ++ + E SG + V
Sbjct: 165 LAGFVAPLVSLRAARAAEQALARLRGEL-AAQLTDALDGAAELVASGALPAALAQVEEAD 223
Query: 252 GEKQAIEKYNNKLQVAYRAAVQQGMVSGI-GLGVLMLTVIGTYGLAVWYGSKLIIEKGYN 310
E E+ + A A+ + GL VL G +A G
Sbjct: 224 RELTRAER-----RAAAATALGAALTLLAAGLAVLGALWAGGPAVA----------DGRL 268
Query: 311 GGTVINVIMAIMTGGMSLGQT---SPCLNAFAG---GQAAAYKMFETIKRK-PKIDPYDT 363
+ V++ + L + A +AAA ++ E + P +
Sbjct: 269 APVTLAVLVL-----LPLAAFEAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAP 323
Query: 364 SGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLV 423
+ + + +ELRD+ YP P V G SL +P G A++G SGSGKST+++ +
Sbjct: 324 AAGAVGLGKPTLELRDLSAGYPGAPPV--LDGVSLDLPPGERVAILGPSGSGKSTLLATL 381
Query: 424 ERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEI 483
DP GEV +DG+ + L +R ++ + +Q+ LF T++REN+ + +ATD+E+
Sbjct: 382 AGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEEL 441
Query: 484 RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSA 543
A+E A ++ LP GLDT+ GE G +LSGG++QR+A+ARA+L + ILLLDE T
Sbjct: 442 WAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEH 501
Query: 544 LDAESERIVQDALVKIMTSRTTVVVAHRL 572
LDAE+ + + L+ ++ RT V++ H L
Sbjct: 502 LDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 194 bits (496), Expect = 9e-52
Identities = 154/532 (28%), Positives = 256/532 (48%), Gaps = 46/532 (8%)
Query: 762 LIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQ-EISWFDDPANSSGSVG 820
+ Y++ I++ I Q + V G +L I L++ K + + +S+F +G +
Sbjct: 204 IAYIIQQILSYI----QIFLLNVLGQRLSIDI-ILSYIKHLFELPMSFFS--TRRTGEIV 256
Query: 821 ARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQ 880
+R + +S I +L L+L + + GL + N +L + L P+ V
Sbjct: 257 SRFTDASSIIDALASTILSLFLDMWILVIVGLFLVRQ-NMLLFLLSLLSIPVYAVIIILF 315
Query: 881 TKFMKGFSADAKLMYEEASQVANDA----VGSIRTVASFCSEE----KVMDLYEKKCEGP 932
+ + DA +A+ V N + + I T+ S SE K+ +
Sbjct: 316 KRTFNKLNHDAM----QANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKS 371
Query: 933 LKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISAL- 991
K A + L+L N + G+ LV GK T GQ+ +T +AL
Sbjct: 372 FKYQKADQG-QQAIKAVTKLIL---NVVILWTGAYLVMRGKLTLGQL------ITFNALL 421
Query: 992 -----GVSQTSAMAPDTTKAKDSAASIFEIL--DSKPKIDSSKDEGMTLSSVGGAIELRC 1044
+ + P A+ + + E+ DS+ +K + L+++ G I +
Sbjct: 422 SYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSE---FINKKKRTELNNLNGDIVIND 478
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI 1104
VS+ Y I ++ L+I +VG SGSGKST+ L+ F+ SG +LL+
Sbjct: 479 VSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536
Query: 1105 ELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISA 1164
L LRQ + + QEP +F+ +I N+ G + +++EI AA E + + I
Sbjct: 537 SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIEN 596
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224
+P GY+T + E G +SGGQKQRIA+ARA+L + K+L+LDE+TS LD +E+ + + L
Sbjct: 597 MPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN 656
Query: 1225 VMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLV 1276
+ ++T + VAHRL+ K +D I V+ +G I EQGSHD L+ +G YASL+
Sbjct: 657 -LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD-RNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 4e-51
Identities = 94/241 (39%), Positives = 139/241 (57%), Gaps = 2/241 (0%)
Query: 382 FRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDI 441
F YP + + + G + G +GSGKST++SL++R +D G++ I +
Sbjct: 321 FTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL 379
Query: 442 KKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPK 501
KLQL R ++ +VSQ P LF+ ++ NIA G+ +AT QEI LA+ I +LP+
Sbjct: 380 TKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQ 439
Query: 502 GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT 561
G DT GE G LSGGQKQRI+IARA+L N +IL+LD+A SA+D +E + L +
Sbjct: 440 GYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE 499
Query: 562 SRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAED 621
RT ++ AHRL+ + A I V+ G I ++G HD+L + G Y + R Q+ +D
Sbjct: 500 GRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQS-GWYRDMYRYQQLEAALDD 558
Query: 622 A 622
A
Sbjct: 559 A 559
|
Length = 569 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 5e-49
Identities = 84/279 (30%), Positives = 150/279 (53%), Gaps = 8/279 (2%)
Query: 53 MIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAF 112
+++ + I +G L+ G ++S + S +++ L +A G
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGN---GDERSSLISLAILLIAVGVLQGLL 57
Query: 113 LQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDT---ETTTGEVIGRMSGDTILIQEAM 169
LQ S + GER RIR + +LRQ +G + + GE+ R++ D I++ +
Sbjct: 58 LQGSFY--LGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGL 115
Query: 170 GEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIA 229
G+K+G F Q ++T GGF+V GW L LVLLA LP +++ +A + K++ + Q A
Sbjct: 116 GDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKA 175
Query: 230 YSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTV 289
Y++AG+V E+++SGIRTV +F E+ +E+Y+ L+ A +A +++ + +G+ G+ L
Sbjct: 176 YAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLIS 235
Query: 290 IGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSL 328
+Y LA+W+G+ L+I G + GTV + + L
Sbjct: 236 YLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 8e-48
Identities = 90/269 (33%), Positives = 142/269 (52%), Gaps = 15/269 (5%)
Query: 977 GQVFKVFFALTISALGVSQTSAMAPDT------TKAKDSAASIFEILDSKPKIDSSKDEG 1030
V L ++A A A T+ + +A I E+LD+ +
Sbjct: 270 PVTLAVLVLLPLAA-----FEAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPA 324
Query: 1031 MTLSSVGGA-IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIE 1089
+G +ELR +S YP P V + L +P G+ VA++G SGSGKST++A +
Sbjct: 325 AGAVGLGKPTLELRDLSAGYPGAPPV--LDGVSLDLPPGERVAILGPSGSGKSTLLATLA 382
Query: 1090 RFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEI 1149
DP G V LD + + +R+++ + +Q+ LF+ T+R N+ + AT+EE+
Sbjct: 383 GLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLAR-PDATDEEL 441
Query: 1150 IAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSA 1209
AA E +++ ALP G +T +GE G +LSGG++QR+A+ARA+L + ILLLDE T
Sbjct: 442 WAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEH 501
Query: 1210 LDAESERVVQDALERVMVNRTTVVVAHRL 1238
LDAE+ + + L + RT V++ H L
Sbjct: 502 LDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 3e-47
Identities = 84/240 (35%), Positives = 127/240 (52%), Gaps = 29/240 (12%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD-----P 429
IELRD+ Y + SL +P G AL+G SG GKST++ L+ R D P
Sbjct: 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 430 DAGEVLIDGIDIKKLQLK--WIREKIGLVSQEPILFATSLRENIAYG-------KENATD 480
D GEVL+DG DI L + +R ++G+V Q+P F S+ +N+AYG + D
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 481 QEIRTAIELAN-AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDE 539
+ + A+ A + D+L H LSGGQ+QR+ +ARA+ P++LLLDE
Sbjct: 118 ERVEEALRKAALWDEVKDRL----------HALGLSGGQQQRLCLARALANEPEVLLLDE 167
Query: 540 ATSALDAESERIVQDALVKIMTSRTTVVVAHRL-TTIRNADLIAVVHQGKIVEKGTHDEL 598
TSALD S +++ + ++ T V+V H + R AD A + G++VE G +++
Sbjct: 168 PTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 2e-46
Identities = 90/260 (34%), Positives = 143/260 (55%), Gaps = 15/260 (5%)
Query: 375 IELRDVYFRYPARPEVQIFA--GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
IEL +V + + A SL +P G ++G SG+GKST++ L+ P +G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 433 EVLIDGIDIKKL---QLKWIREKIGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIE 488
V +DG D+ L +L+ +R+KIG++ Q L ++ ++ EN+A+ E A + I+
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA--GVPKAEIK 119
Query: 489 LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
A+ ++ + GL A + QLSGGQKQR+AIARA+ NPKILL DEATSALD E+
Sbjct: 120 -QRVAELLELV--GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176
Query: 549 ERIVQDALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGP 605
+ + + L I T V++ H + ++ D +AV+ QG++VE+GT E+ +P+
Sbjct: 177 TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHA 236
Query: 606 YTQ-LVRLQEGSKEAEDALA 624
TQ + E+ L
Sbjct: 237 ITQEFIGETLEIDLPEELLE 256
|
Length = 339 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 1e-44
Identities = 90/213 (42%), Positives = 138/213 (64%), Gaps = 14/213 (6%)
Query: 407 ALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATS 466
+L + GSG+ + + ++G++L+DG+DI LK +R +VSQEP+LF S
Sbjct: 1259 SLTKEGGSGEDSTVF-------KNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMS 1311
Query: 467 LRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526
+ ENI +GKE+AT ++++ A + A +FI+ LP DT G +G LSGGQKQRIAIAR
Sbjct: 1312 IYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIAR 1371
Query: 527 AILKNPKILLLDEATSALDAESERIVQDALVKI--MTSRTTVVVAHRLTTIRNADLIAVV 584
A+L+ PKILLLDEATS+LD+ SE++++ +V I +T + +AHR+ +I+ +D I V
Sbjct: 1372 ALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVF 1431
Query: 585 HQ----GKIVE-KGTHDELIKDPEGPYTQLVRL 612
+ G V+ GTH+EL+ +G Y + V+L
Sbjct: 1432 NNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464
|
Length = 1466 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 2e-44
Identities = 81/277 (29%), Positives = 135/277 (48%), Gaps = 7/277 (2%)
Query: 718 LLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPF 777
LLI + + G +F LLL + + + S +L L++ + L +
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLID--GNGDERSSLISLAILLIAVGVLQGLLL 58
Query: 778 QNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFD--DPANSSGSVGARLSTDASTIRSLVG 835
Q F+ G +L +RIR F ++ Q + NS G + +RL+ D S IR +G
Sbjct: 59 QGSFYL--GERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLG 116
Query: 836 DSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMY 895
D L L Q++AT+ G I+ F W L V+LA+ PL+++ K ++ + + Y
Sbjct: 117 DKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAY 176
Query: 896 EEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLY 955
+A VA +++ IRTV +F EE ++ Y+K E K G+++ I +G FG + L+ Y
Sbjct: 177 AKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISY 236
Query: 956 CTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALG 992
+ A + G+ LV G + G VF F +L + G
Sbjct: 237 LSYALALWFGAYLVISGGLSVGTVF-AFLSLGLQLSG 272
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 2e-44
Identities = 83/243 (34%), Positives = 131/243 (53%), Gaps = 25/243 (10%)
Query: 375 IELRDVYFRYPARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
IEL++V + +V SL VP G ++G+SG+GKST+I + P +G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 434 VLIDGIDIKKL---QLKWIREKIGLVSQEPILFAT-SLRENIAYGKENA------TDQEI 483
VL+DG D+ L +L+ R +IG++ Q L ++ ++ EN+A E A ++ +
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 484 RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSA 543
+EL D P QLSGGQKQR+ IARA+ NPK+LL DEATSA
Sbjct: 122 LELLELVGLEDKADAYP-----------AQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 544 LDAESERIVQDALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600
LD E+ + + L I T V++ H + ++ D +AV+ +G++VE+GT +E+
Sbjct: 171 LDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230
Query: 601 DPE 603
+P+
Sbjct: 231 NPQ 233
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 4e-44
Identities = 80/219 (36%), Positives = 116/219 (52%), Gaps = 14/219 (6%)
Query: 376 ELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVL 435
EL+++ F YP SL + G +VG +GSGKST++ L+ P +GEVL
Sbjct: 1 ELKNLSFSYPDGAR-PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 436 IDGIDIKKLQLKWIREKIGLVSQEP--ILFATSLRENIAYGKENA--TDQEIRTAIELAN 491
+DG D+ KL LK +R K+GLV Q P F ++ E +A+G EN ++EI +E A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEA- 118
Query: 492 AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI 551
GL+ + LSGGQKQR+AIA + +P ILLLDE T+ LD R
Sbjct: 119 LELV------GLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 552 VQDALVKIMTSRTTVVVA-HRLTTIRN-ADLIAVVHQGK 588
+ + L K+ T+++ H L + AD + V+ GK
Sbjct: 173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 4e-44
Identities = 68/216 (31%), Positives = 104/216 (48%), Gaps = 44/216 (20%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+E+ +V FRYP + S + G + A++G SGSGKST+ L+ P +G V
Sbjct: 1 LEVENVSFRYPGAEPP-VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAK 494
+DG DI + + + +G + Q+ LF+ S+ ENI
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96
Query: 495 FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD 554
LSGGQ+QR+ +ARA+ NP+IL+LDE S LD E ER +
Sbjct: 97 -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 555 ALVKI-MTSRTTVVVAHRLTTIRNADLIAVVHQGKI 589
A+ + T +V+AHR T+ +AD I V+ G++
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 167 bits (426), Expect = 8e-44
Identities = 88/238 (36%), Positives = 133/238 (55%), Gaps = 10/238 (4%)
Query: 368 LEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFY 427
L + EG + + +V P + G S + +G A++G SGSGKST+ L+ +
Sbjct: 310 LPEPEGHLSVENVTIV-PPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIW 368
Query: 428 DPDAGEVLIDGIDIKKLQLKWIREK----IGLVSQEPILFATSLRENIAYGKENATDQEI 483
P +G V +DG D+K+ W RE IG + Q+ LF ++ ENIA ENA ++I
Sbjct: 369 PPTSGSVRLDGADLKQ----WDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKI 424
Query: 484 RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSA 543
A +LA + I +LP G DT+ G G LSGGQ+QRIA+ARA+ +PK+++LDE S
Sbjct: 425 IEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSN 484
Query: 544 LDAESERIVQDALVKIMTSR-TTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIK 600
LD E E+ + +A+ + T VV+ HR + + D I V+ G+I G DE++
Sbjct: 485 LDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 7e-43
Identities = 80/293 (27%), Positives = 137/293 (46%), Gaps = 25/293 (8%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE+R++ +Y + G S V G L+G +G+GK+T++ ++ P +GE+
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFAT-SLRENI-----AYGKENATDQE-IRTAI 487
L+ G D+ K + +R +IG V QEP L+ ++REN+ YG +E I +
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
EL +K + L SGG KQR++IA A+L +P++L+LDE TS LD E
Sbjct: 122 ELFGLEDKANKKVRTL-----------SGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 548 SERIVQDALVKI--MTSRTTVVVAHRLTTI-RNADLIAVVHQGKIVEKGTHDELIKDPEG 604
S R + + L ++ T ++ H L D + +++ GKI+ +GT +EL + G
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230
Query: 605 PYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISR 657
+ + + +IL+ + G + ES+
Sbjct: 231 KGVIELEPERLELAELLEGLKLVKGEEELAEILEALL-EEGVKIESIEVKEPS 282
|
Length = 293 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 8e-43
Identities = 91/264 (34%), Positives = 145/264 (54%), Gaps = 9/264 (3%)
Query: 1005 KAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLS 1064
A+ + + E+L + P S+D M L G + + V+ P R + S
Sbjct: 286 GARQAYKRLNELLANYP----SRDPAMPLPEPEGHLSVENVTIV-PPGGKKPTLRGISFS 340
Query: 1065 IPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQE 1124
+ +G+ +A++G SGSGKST+ LI + P SG V LD +L ++ + +G + Q+
Sbjct: 341 LQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQD 400
Query: 1125 PVLFNETIRTNIA-YGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGG 1183
LF T+ NIA +G+ A E+II A + + H I LP GY+T +G G LSGG
Sbjct: 401 VELFPGTVAENIARFGEN--ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGG 458
Query: 1184 QKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR-TTVVVAHRLTTIK 1242
Q+QRIA+ARA+ +PK+++LDE S LD E E+ + +A++ + T VV+ HR + +
Sbjct: 459 QRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG 518
Query: 1243 NADIIAVVKNGVIAEQGSHDALMK 1266
D I V+++G IA G D ++
Sbjct: 519 CVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 1e-42
Identities = 66/219 (30%), Positives = 111/219 (50%), Gaps = 41/219 (18%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+ + +V F YP + + Q+ SL + G AL+G+SGSGKST++ L+ P GE+
Sbjct: 1 LSINNVSFSYPEQEQ-QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAK 494
+DG+ + L+ K + I +++Q P LF T+LR N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 495 FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD 554
G + SGG++QR+A+AR +L++ I+LLDE T LD +ER +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 555 ALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKG 593
+ +++ +T + + H LT I + D I + GKI+ +G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 154 bits (390), Expect = 2e-42
Identities = 75/224 (33%), Positives = 130/224 (58%), Gaps = 24/224 (10%)
Query: 373 GEIELRDVYFRY-PARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA 431
GEIE+ ++ RY P P V S V +G +VG++G+GKST+I + RF + +
Sbjct: 5 GEIEVENLSVRYAPDLPPV--LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 432 GEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENI-AYGKENATDQEIRTAIELA 490
G++ IDGIDI + L+ +R + ++ Q+P LF+ ++R N+ + + +D+EI A+ ++
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEY--SDEEIYGALRVS 120
Query: 491 NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER 550
E G LS GQ+Q + +ARA+LK P++L+LDEAT+++D ++
Sbjct: 121 ------------------EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 551 IVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGT 594
++Q + + T+ T + +AHRL TI + D I V+ G++ E
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 3e-42
Identities = 72/219 (32%), Positives = 110/219 (50%), Gaps = 49/219 (22%)
Query: 1040 IELRCVSFKYP--TRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
+E+ VSF+YP P + RN+ SI G+++A++G SGSGKST+ LI P SG
Sbjct: 1 LEVENVSFRYPGAEPP---VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG 57
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASN 1157
V LD ++ ++ + L +G + Q+ LF+ +I NI
Sbjct: 58 RVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI--------------------- 96
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
LSGGQ+QR+ +ARA+ NP+IL+LDE S LD E ER
Sbjct: 97 ----------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERA 134
Query: 1218 VQDALERV-MVNRTTVVVAHRLTTIKNADIIAVVKNGVI 1255
+ A+ + T +V+AHR T+ +AD I V+++G +
Sbjct: 135 LNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 6e-42
Identities = 83/237 (35%), Positives = 125/237 (52%), Gaps = 22/237 (9%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----P 1094
IELR ++ Y D +++ L IP G+ AL+G SG GKST++ L+ R D P
Sbjct: 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 1095 DSGHVLLD--NIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGK--QGGATEEEII 1150
D G VLLD +I + LR+++G+V Q+P F +I N+AYG G +EE+
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 1151 AATEASNAHNFISALPHGYETNVGER--GVQLSGGQKQRIAIARAVLKNPKILLLDEATS 1208
E + +AL V +R + LSGGQ+QR+ +ARA+ P++LLLDE TS
Sbjct: 118 ERVEEALR---KAALW----DEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTS 170
Query: 1209 ALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264
ALD S +++ + + T V+V H + AD A + NG + E G + +
Sbjct: 171 ALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 8e-42
Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 26/229 (11%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+EL+ + Y V+ SL V G AL+G SG GK+T++ L+ PD+GE+
Sbjct: 1 LELKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFAT-SLRENIAYG------KENATDQEIRTAI 487
LIDG D+ + + R IG+V Q+ LF ++ ENIA+G + +R +
Sbjct: 58 LIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
EL +++ P +LSGGQ+QR+A+ARA+ + P +LLLDE SALDA+
Sbjct: 116 ELVGLEGLLNRYP-----------HELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 548 SERIVQDALVKIMTSR--TTVVVAHRLT-TIRNADLIAVVHQGKIVEKG 593
+++ L ++ TT+ V H + AD IAV+++G+IV+ G
Sbjct: 165 LREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 1e-41
Identities = 88/214 (41%), Positives = 132/214 (61%), Gaps = 15/214 (7%)
Query: 1072 ALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNET 1131
+L E GSG+ + + +SG +LLD +++ + L LR +VSQEP+LFN +
Sbjct: 1259 SLTKEGGSGEDSTVF-------KNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMS 1311
Query: 1132 IRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIA 1191
I NI +GK+ AT E++ A + + FI +LP+ Y+TNVG G LSGGQKQRIAIA
Sbjct: 1312 IYENIKFGKED-ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIA 1370
Query: 1192 RAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKNADIIAV 1249
RA+L+ PKILLLDEATS+LD+ SE++++ + + ++T + +AHR+ +IK +D I V
Sbjct: 1371 RALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVV 1430
Query: 1250 VKN-----GVIAEQGSHDALMKITDGAYASLVAL 1278
N + G+H+ L+ + DG Y V L
Sbjct: 1431 FNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464
|
Length = 1466 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 1e-41
Identities = 81/247 (32%), Positives = 131/247 (53%), Gaps = 29/247 (11%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE++++ + + ++ G SL V G ++G SGSGKST++ + +PD+G +
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 435 LIDGIDI-KKLQLKWIREKIGLVSQEPILFA--TSLRENIAYG--------KENATDQEI 483
+DG D+ K + +R K+G+V Q+ LF T L EN+ K A ++
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVL-ENVTLAPVKVKKLSKAEAREK-- 116
Query: 484 RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSA 543
A + ++K+ GL A + QLSGGQ+QR+AIARA+ +PK++L DE TSA
Sbjct: 117 --------ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSA 166
Query: 544 LDAESERIVQDALVKIMTS-RTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601
LD E V D + + T ++V H + R AD + + QGKI+E+G +E +
Sbjct: 167 LDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
Query: 602 PEGPYTQ 608
P+ T+
Sbjct: 227 PKSERTR 233
|
Length = 240 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 3e-41
Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 42/220 (19%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+ + VSF YP + + Q+ +NL L + G+ +AL+G SGSGKST++ L+ P G +
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAH 1159
LD + + + + L + +++Q P LF+ T+R N+
Sbjct: 60 TLDGVPVSDLEKA-LSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 1160 NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQ 1219
G + SGG++QR+A+AR +L++ I+LLDE T LD +ER +
Sbjct: 96 -----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL 138
Query: 1220 DALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQG 1259
+ V+ ++T + + H LT I++ D I ++NG I QG
Sbjct: 139 SLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 3e-41
Identities = 86/244 (35%), Positives = 128/244 (52%), Gaps = 36/244 (14%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IELR + + R + G L V G A++G SGSGKST++ L+ PD+GEV
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 435 LIDGIDIKKL---QLKWIREKIGLVSQEPILFATSL--RENIAYG---KENATDQEIRT- 485
LIDG DI L +L +R ++G++ Q LF SL EN+A+ +++EIR
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALF-DSLTVFENVAFPLREHTRLSEEEIREI 116
Query: 486 ---AIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATS 542
+E D P +LSGG K+R+A+ARA+ +P++LL DE T+
Sbjct: 117 VLEKLEAVGLRGAEDLYP-----------AELSGGMKKRVALARALALDPELLLYDEPTA 165
Query: 543 ALDAESERIVQDALVKIMTSR-----TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHD 596
LD + ++ D I + + T+++V H L T AD IAV++ GKIV +GT +
Sbjct: 166 GLDPIASGVIDDL---IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPE 222
Query: 597 ELIK 600
EL
Sbjct: 223 ELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 4e-41
Identities = 85/241 (35%), Positives = 140/241 (58%), Gaps = 6/241 (2%)
Query: 373 GEIELRDVYFRYPA--RPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD 430
GEI++ D+ RY +P + ++ G + G++GSGKS++ R D
Sbjct: 18 GEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74
Query: 431 AGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELA 490
G+++IDGIDI KL L +R ++ ++ Q+PILF+ S+R N+ + TD + A+E+A
Sbjct: 75 DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIA 133
Query: 491 NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER 550
+ LP GLD + E G S GQ+Q +ARA ++ IL++DEAT+++D +E
Sbjct: 134 QLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193
Query: 551 IVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610
I+Q ++ RT V +AHR++TI +ADL+ V+ +G +VE T + L+ +G + LV
Sbjct: 194 ILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253
Query: 611 R 611
R
Sbjct: 254 R 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 5e-41
Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 25/225 (11%)
Query: 1038 GAIELRCVSFKYPTRPDV-QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS 1096
G IE+ +S +Y PD+ + +N+ + +G+ + +VG +G+GKST+I + RF + +
Sbjct: 5 GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 1097 GHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNI-AYGKQGGATEEEIIAATEA 1155
G + +D I++ L LR + ++ Q+P LF+ TIR+N+ + + ++EEI A
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEY---SDEEIYGALR- 118
Query: 1156 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE 1215
V E G+ LS GQ+Q + +ARA+LK P++L+LDEAT+++D ++
Sbjct: 119 -----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATD 161
Query: 1216 RVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGS 1260
++Q + N T + +AHRL TI + D I V+ G + E
Sbjct: 162 ALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 7e-41
Identities = 76/220 (34%), Positives = 111/220 (50%), Gaps = 48/220 (21%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+EL++V RY + + SL++ +G AL+G SGSGKST++ + +PD+G +
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 435 LIDGIDIKKL--QLKWIREKIGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELAN 491
LIDG D+ L +L +R +IG+V Q+ LF ++ ENIA G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 492 AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI 551
LSGGQ+QR+A+ARA+ +P +LLLDE TSALD + R
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 552 VQDALVKI--MTSRTTVVVAHRLT-TIRNADLIAVVHQGK 588
V+ L + T V+V H L R AD + V+ GK
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 8e-41
Identities = 82/241 (34%), Positives = 124/241 (51%), Gaps = 25/241 (10%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE ++ FRYP SL + G L+G +GSGKST++ L+ P +GEV
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 435 LIDGIDIKKLQLKW-IREKIGLVSQEPI--LFATSLRENIAYGKEN------ATDQEIRT 485
L+DG+D + +R+K+GLV Q P LF ++ + +A+G EN ++ +
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 486 AIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALD 545
A+EL + +D+ P LSGGQKQR+AIA + P+ILLLDE T+ LD
Sbjct: 122 ALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 546 AESERIVQDALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDP 602
+ R + + L K+ T ++V H L + AD + V+ GKI+ G E+ D
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
Query: 603 E 603
E
Sbjct: 231 E 231
|
Length = 235 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 2e-40
Identities = 77/241 (31%), Positives = 123/241 (51%), Gaps = 36/241 (14%)
Query: 375 IELRDVYFRYPARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
+E++++ +P V+ S + G T LVG+SGSGKST+ + P +G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 434 VLIDGIDIKKL---QLKWIREKIGLVSQEPILFATSL------RENIA-----YGKENAT 479
++ DG D+ KL K R++I +V Q+P+ +SL E IA +GK +
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPM---SSLNPRMTIGEQIAEPLRIHGKLSKK 118
Query: 480 DQEIRTAIELA----NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKIL 535
+ + L + +++ P +LSGGQ+QR+AIARA+ NPK+L
Sbjct: 119 EARKEAVLLLLVGVGLPEEVLNRYP-----------HELSGGQRQRVAIARALALNPKLL 167
Query: 536 LLDEATSALDAESERIVQDALVKIMTSR-TTVV-VAHRLTTIRN-ADLIAVVHQGKIVEK 592
+ DE TSALD + + D L K+ T++ + H L + AD +AV++ GKIVE+
Sbjct: 168 IADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227
Query: 593 G 593
G
Sbjct: 228 G 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 2e-40
Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 17/224 (7%)
Query: 375 IELRDVYFRYP-ARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
+E+R+V Y V SL V G ALVG SG GKST++ ++ P +GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIAYGKENATDQEIRTAIELANA 492
VL+DG + G V Q+ L ++ +N+A G E Q + A A
Sbjct: 61 VLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLDNVALGLEL---QGVPKAEARERA 112
Query: 493 AKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIV 552
+ ++ + GL + QLSGG +QR+A+ARA+ +P +LLLDE SALDA + +
Sbjct: 113 EELLELV--GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL 170
Query: 553 QDALVKIM--TSRTTVVVAHRLT-TIRNADLIAVVHQ--GKIVE 591
Q+ L+ I T +T ++V H + + AD + V+ G+IV
Sbjct: 171 QEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 4e-40
Identities = 74/218 (33%), Positives = 115/218 (52%), Gaps = 19/218 (8%)
Query: 1040 IELRCVSFKYPTRPDVQ--IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
I + SF + + +++ L +P G+ VA+VG GSGKS++++
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLS----------- 49
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASN 1157
LL +E +S + VSQEP + N TIR NI +GK EE +A
Sbjct: 50 -ALLGELEKLSGSVSVPGS-IAYVSQEPWIQNGTIRENILFGKP--FDEERYEKVIKACA 105
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAE-SER 1216
+ LP G T +GE+G+ LSGGQKQRI++ARAV + I LLD+ SA+DA
Sbjct: 106 LEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRH 165
Query: 1217 VVQDAL-ERVMVNRTTVVVAHRLTTIKNADIIAVVKNG 1253
+ ++ + ++ N+T ++V H+L + +AD I V+ NG
Sbjct: 166 IFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 4e-40
Identities = 100/309 (32%), Positives = 164/309 (53%), Gaps = 17/309 (5%)
Query: 964 IGSVLVEHGKATFGQVFKVFFALTI---SALG-VSQTSAMAPDTTKAKDSAASIFEILDS 1019
+G+ LV G+ T G + A +I AL + A A+ S + E+L
Sbjct: 263 LGAWLVIKGEITPG----MMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAE 318
Query: 1020 KPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGS 1079
P + E M L + GA+ + ++ P + I + + ++ +G+ + ++G SGS
Sbjct: 319 LP----AAAERMPLPAPQGALSVERLTAAPPGQKKP-ILKGISFALQAGEALGIIGPSGS 373
Query: 1080 GKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIA-Y 1138
GKST+ L+ + P SG V LD +L ++ L + +G + Q+ LF+ TI NIA +
Sbjct: 374 GKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARF 433
Query: 1139 GKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNP 1198
G++ A E++I A + H I LP GY+T +GE G LSGGQ+QRIA+ARA+ +P
Sbjct: 434 GEE--ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDP 491
Query: 1199 KILLLDEATSALDAESERVVQDALERVMVN-RTTVVVAHRLTTIKNADIIAVVKNGVIAE 1257
+++LDE S LD+E E + A+ T VV+AHR + + + D I V+++G IA
Sbjct: 492 FLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAA 551
Query: 1258 QGSHDALMK 1266
G + ++
Sbjct: 552 FGPREEVLA 560
|
Length = 580 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 6e-40
Identities = 77/237 (32%), Positives = 128/237 (54%), Gaps = 19/237 (8%)
Query: 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
+E+R+V + SL + G L+G SG GK+T++ ++ F P +G
Sbjct: 4 PALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 433 EVLIDGIDIKKLQLKWIREKIGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELAN 491
E+L+DG DI + + + IG+V Q LF ++ EN+A+G + ++++ A A
Sbjct: 61 EILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKV--RKKLKKAEIKAR 116
Query: 492 AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI 551
+ ++ + GL+ A QLSGGQ+QR+A+ARA++ PK+LLLDE SALDA+
Sbjct: 117 VEEALELV--GLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQ 174
Query: 552 VQDALVKIMTSR--TTVVVAH----RLTTIRNADLIAVVHQGKIVEKGTHDELIKDP 602
++ L ++ T V V H L +D IAV++ G+I + GT +E+ + P
Sbjct: 175 MRKELKELQRELGITFVYVTHDQEEALAM---SDRIAVMNDGRIEQVGTPEEIYERP 228
|
Length = 352 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 7e-40
Identities = 74/243 (30%), Positives = 127/243 (52%), Gaps = 30/243 (12%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
E+EL++V + + ++ +L + G L+G SG GKST++ ++ +P +GE
Sbjct: 3 ELELKNVRKSFGSFEVLK---DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFAT-SLRENIAYGKENA------TDQEIRTA 486
+LIDG D+ L + + I +V Q L+ ++ ENIA+G + D+ ++
Sbjct: 60 ILIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV 117
Query: 487 IELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 546
+L +++ P QLSGGQ+QR+A+ARA+++ PK+ LLDE S LDA
Sbjct: 118 AKLLGLEHLLNRKPL-----------QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 547 ESERIVQDALVKI--MTSRTTVVVAHRLT---TIRNADLIAVVHQGKIVEKGTHDELIKD 601
+ +++ + K+ TT+ V H T+ AD I V++ G+I + GT EL +
Sbjct: 167 KLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTL--ADRIVVMNDGRIQQVGTPLELYER 224
Query: 602 PEG 604
P
Sbjct: 225 PAN 227
|
Length = 338 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 9e-40
Identities = 83/234 (35%), Positives = 124/234 (52%), Gaps = 23/234 (9%)
Query: 1040 IELRCVSFKYPTR--PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
IEL VS + V ++ L IP G+ ++G SG+GKST++ LI P SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1098 HVLLDNIE---LPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAYG-KQGGATEEEIIA- 1151
V +D + L + +L LRQ++G++ Q L + T+ N+A+ + G + EI
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 1152 ATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
E +S Y QLSGGQKQR+AIARA+ NPKILL DEATSALD
Sbjct: 122 VAELLELVG-LSDKADRYP-------AQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
Query: 1212 AESERVVQDALERVMVNR----TTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
E+ + + + L+ +NR T V++ H + +K D +AV+ G + E+G+
Sbjct: 174 PETTQSILELLKD--INRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225
|
Length = 339 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 2e-39
Identities = 77/222 (34%), Positives = 116/222 (52%), Gaps = 21/222 (9%)
Query: 1041 ELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVL 1100
EL+ +SF YP ++ L+I G+ V +VG +GSGKST++ L+ P SG VL
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 1101 LDNIELPKFKLSWLRQQMGLVSQEP--VLFNETIRTNIAYG-KQGGATEEEIIAATEASN 1157
+D +L K L LR+++GLV Q P F T+ +A+G + G EEEI E +
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 1158 AHNFISAL----PHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAE 1213
+ L P LSGGQKQR+AIA + +P ILLLDE T+ LD
Sbjct: 120 ELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 1214 SERVVQDALERVMVNRTTVVVA-HRLTTIKN-ADIIAVVKNG 1253
R + + L+++ T+++ H L + AD + V+++G
Sbjct: 169 GRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 2e-39
Identities = 80/242 (33%), Positives = 125/242 (51%), Gaps = 29/242 (11%)
Query: 375 IELRDVYFRYPA-RPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
IE +V RY + V +L + G L+G SGSGK+T + ++ R +P +GE
Sbjct: 1 IEFENVTKRYGGGKKAVN---NLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGE 57
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIA-------YGKENATDQEIRT 485
+ IDG DI++ +R KIG V Q+ LF ++ ENIA + KE +
Sbjct: 58 IFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKI-RERADE 116
Query: 486 AIELAN--AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSA 543
+ L A+F D+ P +LSGGQ+QR+ +ARA+ +P +LL+DE A
Sbjct: 117 LLALVGLDPAEFADRYPH-----------ELSGGQQQRVGVARALAADPPLLLMDEPFGA 165
Query: 544 LDAESERIVQDALVKIMTS--RTTVVVAHRL-TTIRNADLIAVVHQGKIVEKGTHDELIK 600
LD + +Q+ ++ +T V V H + R AD IA++ G+IV+ GT DE+++
Sbjct: 166 LDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225
Query: 601 DP 602
P
Sbjct: 226 SP 227
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 3e-39
Identities = 144/536 (26%), Positives = 248/536 (46%), Gaps = 44/536 (8%)
Query: 100 FLYLAAGTG-IAAFLQVSCWMVTGERQAT-RIRGLYLKTILRQDIGFFDTETTTGEVIGR 157
+Y G G +A S W+++ A R+ L +ILR + FF T TG VI R
Sbjct: 954 VVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT-NPTGRVINR 1012
Query: 158 MSGDTILIQEAMGEKVGKFI----QLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGG 213
S D I + + F+ QL+STF V+ W + + LL A +
Sbjct: 1013 FSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAI-MPLLILFYAAYLYYQ 1071
Query: 214 SMALIMSKMSS--RGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKY---NNKLQVAY 268
S + + ++ S R I Y++ G + +S IR ++ + K N + +A
Sbjct: 1072 STSREVRRLDSVTRSPI-YAQFGEAL-NGLSSIRAYKAYDRMAKINGKSMDNNIRFTLAN 1129
Query: 269 RAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSL 328
++ + + LG +M+ + T+ + NG A T G+ L
Sbjct: 1130 TSSNRWLTIRLETLGGVMIWLTATFAVL------------RNGNAENQAGFA-STMGLLL 1176
Query: 329 GQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPY-DTSGITLEKIE-----------GEIE 376
T +G A K ++ ++ Y D IE G I+
Sbjct: 1177 SYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIK 1236
Query: 377 LRDVYFRYPARPEVQ-IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVL 435
DV+ RY RP + + G S V +VG++G+GKS++++ + R + + G ++
Sbjct: 1237 FEDVHLRY--RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIM 1294
Query: 436 IDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKF 495
ID D+ K L +R + ++ Q P+LF+ ++R NI E+ D ++ A+E A+
Sbjct: 1295 IDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEH-NDADLWEALERAHIKDV 1353
Query: 496 IDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDA 555
ID+ P GLD E G S GQ+Q +++ARA+L+ KIL+LDEAT+++D ++ ++Q
Sbjct: 1354 IDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRT 1413
Query: 556 LVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVR 611
+ + S T +V+AHRL TI + D I V+ G+++E + EL+ + ++V
Sbjct: 1414 IREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVH 1469
|
Length = 1495 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 3e-39
Identities = 80/234 (34%), Positives = 124/234 (52%), Gaps = 28/234 (11%)
Query: 375 IELRDVYFRYPARPE-VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
IEL++V Y E V+ +L + +G A+VG SGSGKST+++L+ P +GE
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 434 VLIDGIDIKKL----QLKWIREKIGLVSQEPILFAT-SLRENIA----YGKENATDQEIR 484
VLI+G D+ KL K R+KIG V Q L ++ EN+ ++A ++
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 485 TAIELAN----AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEA 540
A EL + + K P ++LSGGQ+QR+AIARA++ NPKI+L DE
Sbjct: 122 -AEELLEVLGLEDRLLKKKP-----------SELSGGQQQRVAIARALINNPKIILADEP 169
Query: 541 TSALDAESERIVQDALVKIMTSR--TTVVVAHRLTTIRNADLIAVVHQGKIVEK 592
T LD+++ + V + L ++ R T ++V H + AD + + GKI E+
Sbjct: 170 TGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 3e-39
Identities = 81/241 (33%), Positives = 145/241 (60%), Gaps = 6/241 (2%)
Query: 373 GEIELRDVYFRYPARPEVQ-IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA 431
G I+ DV RY RPE+ + G S + +VG++G+GKS++++ + R + +
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 432 GEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENI-AYGKENATDQEIRTAIELA 490
G +LIDG DI K L +R+ +G++ Q P+LF+ ++R N+ + + N D ++ ++E A
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHN--DADLWESLERA 1351
Query: 491 NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER 550
+ I + GLD E G S GQ+Q +++ARA+L+ KIL+LDEAT+A+D ++
Sbjct: 1352 HLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDA 1411
Query: 551 IVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610
++Q + + S T +++AHRL TI + D I V+ G++VE T + L+ + ++++V
Sbjct: 1412 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMV 1471
Query: 611 R 611
+
Sbjct: 1472 Q 1472
|
Length = 1622 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 7e-39
Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 28/242 (11%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE +V RY + V +L + G L+G SGSGK+T + ++ R +P +GE+
Sbjct: 2 IEFENVSKRYGNKKAVD---DVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIA-------YGKENATDQEIRTA 486
LIDG DI L +R KIG V Q+ LF ++ ENIA + KE +
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERI-KKRADEL 117
Query: 487 IELA--NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
++L + +++ D+ P +LSGGQ+QR+ +ARA+ +P ILL+DE AL
Sbjct: 118 LDLVGLDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGAL 166
Query: 545 DAESERIVQDALVKIM--TSRTTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELIKD 601
D + + +Q+ + ++ +T V V H + ++ AD IAV+ G+IV+ T DE++ +
Sbjct: 167 DPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
Query: 602 PE 603
P
Sbjct: 227 PA 228
|
Length = 309 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 1e-38
Identities = 79/230 (34%), Positives = 138/230 (60%), Gaps = 6/230 (2%)
Query: 373 GEIELRDVYFRYPARPEVQ-IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA 431
G +E R+ RY R ++ + ++ + G +VG++G+GKS++ + R +
Sbjct: 1283 GRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE 1340
Query: 432 GEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENI-AYGKENATDQEIRTAIELA 490
GE++IDG++I K+ L +R KI ++ Q+P+LF+ SLR N+ + + +D+E+ A+ELA
Sbjct: 1341 GEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQ--YSDEEVWWALELA 1398
Query: 491 NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER 550
+ F+ LP LD E G LS GQ+Q + +ARA+L+ KIL+LDEAT+A+D E++
Sbjct: 1399 HLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDN 1458
Query: 551 IVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIK 600
++Q + T + +AHRL TI + + V+ +G++ E G L++
Sbjct: 1459 LIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 2e-38
Identities = 83/238 (34%), Positives = 132/238 (55%), Gaps = 10/238 (4%)
Query: 368 LEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFY 427
L +G + + + P + + I G S + +G ++G SGSGKST+ L+ +
Sbjct: 328 LPAPQGALSVERLTAAPPGQKKP-ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW 386
Query: 428 DPDAGEVLIDGIDIKKLQLKWIREK----IGLVSQEPILFATSLRENIAYGKENATDQEI 483
P +G V +DG D+++ W RE+ IG + Q+ LF ++ ENIA E A +++
Sbjct: 387 PPTSGSVRLDGADLRQ----WDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKV 442
Query: 484 RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSA 543
A LA + I +LP+G DT GE G LSGGQ+QRIA+ARA+ +P +++LDE S
Sbjct: 443 IEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSN 502
Query: 544 LDAESERIVQDALVKIMTS-RTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIK 600
LD+E E + A++ T VV+AHR + + + D I V+ G+I G +E++
Sbjct: 503 LDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560
|
Length = 580 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 4e-38
Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 28/239 (11%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+E+ ++ F Y +P I S +P G ++G +GSGKST++ + P +GEV
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPIL-FATSLRENIAYGK----------ENATDQEI 483
L+DG DI L K + +K+ V Q P F ++ E + G+ ++ +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 484 RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSA 543
A+EL D+ +LSGG++QR+ IARA+ + ILLLDE TS
Sbjct: 120 EEALELLGLEHLADRPV-----------DELSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 544 LDAESERIVQDALVKIM--TSRTTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELI 599
LD + V + L + T V+V H L R AD + ++ GKIV +GT +E++
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 6e-38
Identities = 79/232 (34%), Positives = 111/232 (47%), Gaps = 31/232 (13%)
Query: 375 IELRDVYFRYPARPE-VQIFAGFSLHVPSGTTAALVGQSGSGKST---VISLVERFYDPD 430
IEL+++ Y E VQ G SL + G A+VG SGSGKST ++ ++R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 431 AGEVLIDGIDIKKL----QLKWIREKIGLVSQEPILFAT-SLRENIAY-----GKENATD 480
+GEV +DG DI KL + R IG V Q L + EN+ G
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER 117
Query: 481 QE-IRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDE 539
+E +E ++ P ++LSGGQ+QR+AIARA+ +PKI+L DE
Sbjct: 118 RERAEELLERVGLGDRLNHYP-----------SELSGGQQQRVAIARALANDPKIILADE 166
Query: 540 ATSALDAESERIVQDALVKIMTSR--TTVVVAHRLTTIRNADLIAVVHQGKI 589
T LD+E+ + V + L ++ T VVV H AD I + GKI
Sbjct: 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 6e-38
Identities = 80/224 (35%), Positives = 121/224 (54%), Gaps = 25/224 (11%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE----K 452
SL V G ++G SGSGKST++ + R +P +G+VLIDG DI + K +RE K
Sbjct: 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103
Query: 453 IGLVSQEPILFA-TSLRENIAYGKENA-TDQEIR-----TAIELANAAKFIDKLPKGLDT 505
I +V Q L ++ EN+A+G E + R A+EL + K P
Sbjct: 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD---- 159
Query: 506 MAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS--R 563
+LSGG +QR+ +ARA+ +P ILL+DEA SALD R +QD L+++ +
Sbjct: 160 -------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQK 212
Query: 564 TTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELIKDPEGPY 606
T V + H L +R D IA++ G++V+ GT +E++ +P Y
Sbjct: 213 TIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDY 256
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 9e-38
Identities = 87/239 (36%), Positives = 135/239 (56%), Gaps = 19/239 (7%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE+R V + R I G L VP G A++G SGSGKST++ L+ PD GE+
Sbjct: 9 IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 435 LIDGIDIKKL---QLKWIREKIGLVSQEPILF-ATSLRENIAYGKENATDQEIRTAIELA 490
LIDG DI +L +L IR+++G++ Q+ LF + ++ EN+A+ T EL
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 491 NAAKFIDKLPK-GLDTMAGE-HGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
+ KL GL A + + ++LSGG ++R+A+ARAI +P++L LDE TS LD S
Sbjct: 126 -----LMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPIS 180
Query: 549 ERIVQDALVKIMTSR---TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPE 603
V D L++ + T ++V H L ++ AD +AV+ GK++ +GT +EL+ +
Sbjct: 181 AG-VIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDD 238
|
Length = 263 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 1e-37
Identities = 77/229 (33%), Positives = 122/229 (53%), Gaps = 25/229 (10%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+EL+ +S Y V+ +L L++ G+ +AL+G SG GK+T++ LI PDSG +
Sbjct: 1 LELKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYG-KQGGATEEEI----IAAT 1153
L+D ++ + R+ +G+V Q+ LF + T+ NIA+G K G + EI
Sbjct: 58 LIDGRDV--TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 1154 EASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAE 1213
E ++ PH +LSGGQ+QR+A+ARA+ + P +LLLDE SALDA+
Sbjct: 116 ELVGLEGLLNRYPH-----------ELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 1214 SERVVQDALERVMVNR--TTVVVAHRLT-TIKNADIIAVVKNGVIAEQG 1259
+++ L+ + TT+ V H + AD IAV+ G I + G
Sbjct: 165 LREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 1e-37
Identities = 78/260 (30%), Positives = 135/260 (51%), Gaps = 39/260 (15%)
Query: 375 IELRDVYFRYP--------ARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERF 426
+ +R++ RY R EV+ S + G T LVG+SGSGKST+ ++
Sbjct: 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340
Query: 427 YDPDAGEVLIDGID--IKKLQLKWIREKIGLVSQEPILFAT-----SLRENIA------- 472
P +G ++ DG D + +L+ +R +I +V Q+P +++ ++ + +A
Sbjct: 341 LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP--YSSLNPRMTVGDILAEPLRIHG 398
Query: 473 YGKENATDQEIRTAIEL-ANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531
G + +EL +F+D+ P +LSGGQ+QR+AIARA+
Sbjct: 399 GGSGAERRARVAELLELVGLPPEFLDRYP-----------HELSGGQRQRVAIARALALE 447
Query: 532 PKILLLDEATSALDAESERIVQDALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGK 588
PK+L+LDE SALD + V + L + T + ++H L +R AD +AV++ G+
Sbjct: 448 PKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507
Query: 589 IVEKGTHDELIKDPEGPYTQ 608
IVE+G +++ ++P+ PYT+
Sbjct: 508 IVEEGPTEKVFENPQHPYTR 527
|
Length = 539 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 2e-37
Identities = 78/233 (33%), Positives = 116/233 (49%), Gaps = 24/233 (10%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
IE +SF+YP +++ L I G+ V L+G +GSGKST++ L+ P SG
Sbjct: 3 MIEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60
Query: 1099 VLLDNIELPKFKLSW-LRQQMGLVSQEPV--LFNETIRTNIAYG-KQGGATEEEIIAAT- 1153
VL+D ++ K LRQ++GLV Q P LF T+ +A+G + G EEI
Sbjct: 61 VLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA 120
Query: 1154 ---EASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL 1210
E + P LSGGQKQR+AIA + P+ILLLDE T+ L
Sbjct: 121 EALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGL 169
Query: 1211 DAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
D + R + + L+++ +T ++V H L + AD + V+ +G I G
Sbjct: 170 DPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 2e-37
Identities = 74/221 (33%), Positives = 115/221 (52%), Gaps = 24/221 (10%)
Query: 375 IELRDVYFRYPARPEVQIFA--GFSLHVPSGTTAALVGQSGSGKSTVIS--LVERFYDPD 430
I + D F + + + F +L VP G A+VG GSGKS+++S L E +
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE--LEKL 58
Query: 431 AGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQE-IRTAIEL 489
+G V + G I VSQEP + ++RENI +GK D+E I+
Sbjct: 59 SGSVSVPG-------------SIAYVSQEPWIQNGTIRENILFGKP--FDEERYEKVIKA 103
Query: 490 ANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE-S 548
++ LP G T GE G LSGGQKQRI++ARA+ + I LLD+ SA+DA
Sbjct: 104 CALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG 163
Query: 549 ERIVQDALVKI-MTSRTTVVVAHRLTTIRNADLIAVVHQGK 588
I ++ ++ + + ++T ++V H+L + +AD I V+ G+
Sbjct: 164 RHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 2e-37
Identities = 76/248 (30%), Positives = 120/248 (48%), Gaps = 57/248 (22%)
Query: 375 IELRDVYFRYPAR----PEVQIFA--GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD 428
+E++++ +P + + A G S + G T LVG+SG GKST+ L+ +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 429 PDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIE 488
P +GE+L +G DI KL + RE++ +L L E
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERV-----LELLEKVGLPEE------------------ 101
Query: 489 LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
F+ + P H +LSGGQ+QRI IARA+ NPK+++ DE SALD
Sbjct: 102 ------FLYRYP---------H--ELSGGQRQRIGIARALALNPKLIVADEPVSALDV-- 142
Query: 549 ERIVQDALVKIM------TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601
VQ ++ ++ T + ++H L+ +R +D IAV++ GKIVE G +E+ +
Sbjct: 143 --SVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200
Query: 602 PEGPYTQL 609
P PYT+
Sbjct: 201 PLHPYTKA 208
|
Length = 268 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 3e-37
Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 49/220 (22%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+EL+ VS +Y + ++ L+I +G+ VAL+G SGSGKST++ I +PDSG +
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 1100 LLDNIEL--PKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYGKQGGATEEEIIAATEAS 1156
L+D +L + +L LR+++G+V Q+ LF + T+ NIA G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 1157 NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER 1216
LSGGQ+QR+A+ARA+ +P +LLLDE TSALD + R
Sbjct: 101 -----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRR 137
Query: 1217 VVQDALERV--MVNRTTVVVAHRLT-TIKNADIIAVVKNG 1253
V+ L+ + + T V+V H L + AD + V+++G
Sbjct: 138 EVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 3e-37
Identities = 81/264 (30%), Positives = 125/264 (47%), Gaps = 30/264 (11%)
Query: 375 IELRDVYFRYPARPEV-QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
+ +R++ Y SL + G T +VG+SGSGKST+ L+ P +G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 434 VLIDGIDI-KKLQLKWIREKIGLVSQEPIL-------FATSLRE---NIAYGKENATDQE 482
+L+DG + K + K + +V Q+P L E K E
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAE 123
Query: 483 IRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATS 542
+ + L F+D+ P +LSGGQ+QRIAIARA++ PK+L+LDE TS
Sbjct: 124 LLDQVGLPP--SFLDRRP-----------HELSGGQRQRIAIARALIPEPKLLILDEPTS 170
Query: 543 ALDAESERIVQDALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELI 599
ALD + + + L+++ R T + ++H L + + D IAV+ G+IVE G +EL+
Sbjct: 171 ALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230
Query: 600 KDPEGPYTQLVRLQEGSKEAEDAL 623
P PYT+ L E + L
Sbjct: 231 SHPSHPYTRE--LLEAVPSIDPPL 252
|
Length = 252 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 3e-37
Identities = 68/205 (33%), Positives = 102/205 (49%), Gaps = 28/205 (13%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+E+ V + V++ +L V G A++G SG GKST++ L+ P +GEV
Sbjct: 4 LEIEGVSKSFG---GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIAYG------KENATDQEIRTAI 487
L+DG + IG V QE L ++ +N+A G + + + +
Sbjct: 61 LLDGRPVTG-----PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
EL A F DK P QLSGG +QR+AIARA+ PK+LLLDE ALDA
Sbjct: 116 ELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 548 SERIVQDALVKIM--TSRTTVVVAH 570
+ +QD L+++ T +T ++V H
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTH 189
|
Length = 248 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 4e-37
Identities = 79/246 (32%), Positives = 131/246 (53%), Gaps = 30/246 (12%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD---- 430
IE+RD+ Y + +L +P AL+G SG GKST++ + R D
Sbjct: 8 IEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 431 -AGEVLIDGIDI--KKLQLKWIREKIGLVSQEPILFATSLRENIAYG------KENATDQ 481
GEVL+DG +I K+ + +R ++G+V Q+P F S+ +N+AYG K+ D+
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124
Query: 482 EIRTAIE---LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLD 538
+ ++++ L + K D+L K LSGGQ+QR+ IARA+ P++LL+D
Sbjct: 125 IVESSLKKAALWDEVK--DRLHK--------SALGLSGGQQQRLCIARALAVKPEVLLMD 174
Query: 539 EATSALDAESERIVQDALVKIMTSRTTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDE 597
E TSALD S +++ + ++ T V+V H + R +D A + G++VE G D+
Sbjct: 175 EPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234
Query: 598 LIKDPE 603
+ +P+
Sbjct: 235 IFTNPK 240
|
Length = 253 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 7e-37
Identities = 92/268 (34%), Positives = 142/268 (52%), Gaps = 32/268 (11%)
Query: 375 IELRDVYFRYP-ARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
IEL+++ +P + SLH+P+G ++G SG+GKST+I + P +G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 434 VLIDGIDIKKL---QLKWIREKIGLVSQE-PILFATSLRENIAYGKENATDQEIRTAIEL 489
VL+DG D+ L +L+ R +IG++ Q +L + ++ +N+A +EL
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVAL------------PLEL 109
Query: 490 ANAAK-FIDK-----LPK-GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATS 542
A K I L GL A + QLSGGQKQR+AIARA+ NPK+LL DEATS
Sbjct: 110 AGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 543 ALDAESERIVQDALVKIMTSR----TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDE 597
ALD + R + + L I +R T V++ H + ++ D +AV+ G++VE+GT E
Sbjct: 170 ALDPATTRSILELLKDI--NRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
Query: 598 LIKDPEGPYTQ-LVRLQEGSKEAEDALA 624
+ P+ P T+ ++ ED LA
Sbjct: 228 VFSHPKHPLTREFIQSTLHLDLPEDYLA 255
|
Length = 343 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 1e-36
Identities = 79/233 (33%), Positives = 121/233 (51%), Gaps = 22/233 (9%)
Query: 1040 IELRCVSFKYPTRP-DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
IEL+ VS + V +++ LS+P G+ ++G SG+GKST+I I P SG
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1099 VLLDNIE---LPKFKLSWLRQQMGLVSQEPVLFN-ETIRTNIAYGKQGGATEEEIIAATE 1154
VL+D + L +L R+++G++ Q L + T+ N+A + IA
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLE--------IAGVP 113
Query: 1155 ASNAHNFISALPH--GYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
+ + L G E QLSGGQKQR+ IARA+ NPK+LL DEATSALD
Sbjct: 114 KAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDP 173
Query: 1213 ESERVVQDALERVMVNR----TTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
E+ + + L +NR T V++ H + +K D +AV++ G + E+G+
Sbjct: 174 ETTQSILALLRD--INRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 1e-36
Identities = 76/238 (31%), Positives = 117/238 (49%), Gaps = 29/238 (12%)
Query: 1040 IELRCVSFKYPTRPD-VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
+E++ +S +PT V+ ++ SI G+T+ LVGESGSGKST+ I P SG
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1099 VLLDNIELPKFK---LSWLRQQMGLVSQEPVL-FN--ETIRTNIA-----YGKQGGATEE 1147
++ D +L K R+++ +V Q+P+ N TI IA +GK
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR 121
Query: 1148 EIIAATEAS---NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLD 1204
+ ++ PH +LSGGQ+QR+AIARA+ NPK+L+ D
Sbjct: 122 KEAVLLLLVGVGLPEEVLNRYPH-----------ELSGGQRQRVAIARALALNPKLLIAD 170
Query: 1205 EATSALDAESERVVQDALE--RVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259
E TSALD + + D L+ + + T + + H L + AD +AV+ G I E+G
Sbjct: 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 2e-36
Identities = 81/259 (31%), Positives = 146/259 (56%), Gaps = 9/259 (3%)
Query: 1023 IDSSKDEGMTLSSVGGAIELR--CVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSG 1080
I S + G L +GG I++ CV ++ +P + +++ I G+ V + G +GSG
Sbjct: 5 ISGSSNSG--LVGLGGEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGSG 59
Query: 1081 KSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGK 1140
KS++ R D G +++D I++ K L LR ++ ++ Q+P+LF+ +IR N+
Sbjct: 60 KSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPEC 119
Query: 1141 QGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKI 1200
+ T++ + A E + N + +LP G + V E G S GQ+Q +ARA ++ I
Sbjct: 120 K--CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSI 177
Query: 1201 LLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGS 1260
L++DEAT+++D +E ++Q + +RT V +AHR++TI +AD++ V+ G++ E +
Sbjct: 178 LIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDT 237
Query: 1261 HDALMKITDGAYASLVALH 1279
+ L+ DG +ASLV
Sbjct: 238 PENLLAQEDGVFASLVRTD 256
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 77/234 (32%), Positives = 121/234 (51%), Gaps = 25/234 (10%)
Query: 1039 AIELRCVSFKYPTRP-DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
IEL+ VS Y V+ +++ L I +G+ VA+VG SGSGKST++ L+ P SG
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 1098 HVLLDNIELPKF---KLSWLR-QQMGLVSQE-PVLFNETIRTNIA-----YGKQGGATEE 1147
VL++ +L K +L+ LR +++G V Q +L + T+ N+ GK G +
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR 120
Query: 1148 EIIAATEASN-AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEA 1206
E + P +LSGGQ+QR+AIARA++ NPKI+L DE
Sbjct: 121 AAEELLEVLGLEDRLLKKKPS-----------ELSGGQQQRVAIARALINNPKIILADEP 169
Query: 1207 TSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQ 1258
T LD+++ + V + L + +T ++V H K AD + +K+G I E+
Sbjct: 170 TGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 3e-36
Identities = 64/218 (29%), Positives = 109/218 (50%), Gaps = 48/218 (22%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE+R++ RY + SL V G L+G +G+GK+T+I ++ PD+GE+
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAA 493
+ G DIKK + ++ +IG + +EP L+ ++REN+
Sbjct: 58 KVLGKDIKKEPEE-VKRRIGYLPEEPSLYENLTVRENL---------------------- 94
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
+LSGG KQR+A+A+A+L +P++L+LDE TS LD ES R
Sbjct: 95 -------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 554 DALVKIMTSRTTVVVA-HRLTTIRN-ADLIAVVHQGKI 589
+ L ++ T++++ H L D +A+++ G+I
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 4e-36
Identities = 72/236 (30%), Positives = 111/236 (47%), Gaps = 29/236 (12%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
+E+ +SF Y +P I +L SIP G+ ++G +GSGKST++ + P SG
Sbjct: 2 MLEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVL-FNETIRTNIAYGK---------QGGATEEE 1148
VLLD ++ L +++ V Q P F T+ + G+ EE
Sbjct: 59 VLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI 118
Query: 1149 IIAATEASNAHNFISALPHGYETNVGERGV-QLSGGQKQRIAIARAVLKNPKILLLDEAT 1207
+ A E + +R V +LSGG++QR+ IARA+ + ILLLDE T
Sbjct: 119 VEEALELLGLEHLA------------DRPVDELSGGERQRVLIARALAQETPILLLDEPT 166
Query: 1208 SALDAESERVVQDALERVMV--NRTTVVVAHRLT-TIKNADIIAVVKNGVIAEQGS 1260
S LD + V + L + T V+V H L + AD + ++K+G I QG+
Sbjct: 167 SHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 1e-35
Identities = 75/230 (32%), Positives = 135/230 (58%), Gaps = 5/230 (2%)
Query: 1038 GAIELRCVSFKYPTRPDVQ-IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS 1096
G +E R +Y R D+ + R++ ++I G+ V +VG +G+GKS++ + R +
Sbjct: 1283 GRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE 1340
Query: 1097 GHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEAS 1156
G +++D + + K L LR ++ ++ Q+PVLF+ ++R N+ ++EE+ A E +
Sbjct: 1341 GEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL--DPFSQYSDEEVWWALELA 1398
Query: 1157 NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER 1216
+ F+SALP + E G LS GQ+Q + +ARA+L+ KIL+LDEAT+A+D E++
Sbjct: 1399 HLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDN 1458
Query: 1217 VVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMK 1266
++Q + + T + +AHRL TI + + V+ G +AE G+ L++
Sbjct: 1459 LIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 1e-35
Identities = 70/215 (32%), Positives = 96/215 (44%), Gaps = 60/215 (27%)
Query: 376 ELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVL 435
E+ ++ FRY R SL + +G ALVG +GSGKST++ + P +GE+L
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 436 IDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKF 495
IDG DI KL L+ LR I Y
Sbjct: 58 IDGKDIAKLPLEE------------------LRRRIGY---------------------- 77
Query: 496 IDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDA 555
+P QLSGGQ+QR+A+ARA+L NP +LLLDE TS LD S + +
Sbjct: 78 ---VP------------QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 556 LVKIM-TSRTTVVVAHRLTTIRNA-DLIAVVHQGK 588
L ++ RT ++V H A D + V+ GK
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 2e-35
Identities = 77/243 (31%), Positives = 125/243 (51%), Gaps = 27/243 (11%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IELR ++ + R + + + L + G+ +A++G SGSGKST++ LI PDSG V
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 1100 LLDNIELPKFK---LSWLRQQMGLVSQEPVLFNE-TIRTNIAYG-KQGGATEEEIIAAT- 1153
L+D ++ L LR++MG++ Q LF+ T+ N+A+ ++ EE I
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 1154 ----EASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSA 1209
EA P +LSGG K+R+A+ARA+ +P++LL DE T+
Sbjct: 118 LEKLEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 1210 LDAESERVVQDALERV--MVNRTTVVVAHRLTTI-KNADIIAVVKNGVIAEQGSHDALMK 1266
LD + V+ D + + + T+++V H L T AD IAV+ +G I +G+ + L
Sbjct: 167 LDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
Query: 1267 ITD 1269
D
Sbjct: 227 SDD 229
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 2e-35
Identities = 69/206 (33%), Positives = 95/206 (46%), Gaps = 25/206 (12%)
Query: 1040 IELRCVSFKYPT-RPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
+E+R VS Y V ++ LS+ G+ VALVG SG GKST++ +I P SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFN-ETIRTNIAYG-----KQGGATEEEIIAA 1152
VL+D + G V Q+ L T+ N+A G E
Sbjct: 61 VLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 1153 TEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
E F +A PH QLSGG +QR+A+ARA+ +P +LLLDE SALDA
Sbjct: 116 LELVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 1213 ESERVVQDALERVMV-NRTTVV-VAH 1236
+ +Q+ L + TV+ V H
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTH 190
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 132 bits (336), Expect = 2e-35
Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 44/221 (19%)
Query: 376 ELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVL 435
E+ ++ Y R + SL + +G ++G +G+GKST++ + P +GE+L
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 436 IDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKF 495
+DG D+ L K + KI V Q A+EL A
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ---------------------------ALELLGLAHL 90
Query: 496 IDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDA 555
D+ +LSGG++QR+ +ARA+ + P ILLLDE TS LD + + +
Sbjct: 91 ADR-----------PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 556 LVKIMTSR--TTVVVAHRLT-TIRNADLIAVVHQGKIVEKG 593
L ++ R T V+V H L R AD + ++ G+IV +G
Sbjct: 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-35
Identities = 77/239 (32%), Positives = 129/239 (53%), Gaps = 22/239 (9%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
I++ +V F YP E S + G A++G +GSGKST+ ++ P +GE+
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEP--ILFATSLRENIAYGKENA--TDQEIRTAI-EL 489
IDGI I K LK IR+KIG++ Q P ++ ++IA+G EN ++++ I +L
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 490 ANAA---KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 546
A ++DK P+ LSGGQKQR+AIA + NP+I++ DE+TS LD
Sbjct: 127 AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 547 ESERIVQDALVKI--MTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPE 603
+ +R ++ +V + +T + + H + AD + V +GK++ +G E++ + E
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNKE 234
|
Length = 271 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 3e-35
Identities = 79/247 (31%), Positives = 128/247 (51%), Gaps = 21/247 (8%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD-----P 429
IE+ ++ Y E + +L +P AL+G SG GKST++ + R D
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 430 DAGEVLIDGIDI--KKLQLKWIREKIGLVSQEPILFATSLRENIAYG---KENATDQEIR 484
G+VL DG DI KK+ + +R ++G+V Q+P F S+ +NIAYG +E+
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 485 TAIE--LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATS 542
+E L AA L + + LSGGQ+QR+ IARA+ P++LLLDE TS
Sbjct: 119 EIVEESLKKAA-----LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173
Query: 543 ALDAESERIVQDALVKIMTSRTTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELIKD 601
ALD + +++ + ++ T V+V H + R +D A + G++VE G +++ +
Sbjct: 174 ALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
Query: 602 PEGPYTQ 608
P+ T+
Sbjct: 234 PKEKRTE 240
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 5e-35
Identities = 78/239 (32%), Positives = 128/239 (53%), Gaps = 14/239 (5%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
EIE ++V + + +I S+ G +VG SG+GKST+I L+ R DP G
Sbjct: 3 EIEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAA 493
+LIDG+DIK + + +R KIG+V Q+P LF ++++NI YG ++ + L+
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVG 119
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
+ + + LSGG+ QR++IAR + NP++LLLDE TSALD S I++
Sbjct: 120 LNKEYATRDVK--------NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE 171
Query: 554 DALVKIMTSR--TTVVVAHRLTTI-RNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQL 609
+ +VK+ T + + H + R D A +++G +VE + +P+ T+L
Sbjct: 172 ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKL 230
|
Length = 241 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 7e-35
Identities = 76/232 (32%), Positives = 119/232 (51%), Gaps = 24/232 (10%)
Query: 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
A+E+R VS + D ++ L I G+ V L+G SG GK+T++ +I F P SG
Sbjct: 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYGK--QGGATEEEIIAATE 1154
+LLD ++ + ++ +G+V Q LF + T+ N+A+G + + EI A E
Sbjct: 61 EILLDGEDI--TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118
Query: 1155 ASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAES 1214
A + + QLSGGQ+QR+A+ARA++ PK+LLLDE SALDA+
Sbjct: 119 E--ALELVGLEGFADR-----KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKL 171
Query: 1215 ERVVQDALERVMVNR--TTVVVAH----RLTTIKNADIIAVVKNGVIAEQGS 1260
++ L+ + T V V H L +D IAV+ +G I + G+
Sbjct: 172 REQMRKELKELQRELGITFVYVTHDQEEALAM---SDRIAVMNDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 8e-35
Identities = 79/266 (29%), Positives = 131/266 (49%), Gaps = 46/266 (17%)
Query: 375 IELRD--VYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD-- 430
+E+++ V F A V+ G S + G +VG+SGSGKS + +
Sbjct: 2 LEVKNLSVSFPTDAGV-VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 431 ---AGEVLIDGIDIKKL---QLKWIR-EKIGLVSQEPILFATSL----------RENIAY 473
GE+L DG D+ L +L+ IR ++I ++ Q+P TSL E +
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP---MTSLNPVMTIGDQIAEVLRL 117
Query: 474 GKENATDQE-IRTAIELA------NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526
+ + +E AIEL + + + P H +LSGG +QR+ IA
Sbjct: 118 HGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------H--ELSGGMRQRVMIAM 166
Query: 527 AILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTT--VVVAHRLTTIRN-ADLIAV 583
A+ NPK+L+ DE T+ALD + + D L ++ + T +++ H L + AD +AV
Sbjct: 167 ALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAV 226
Query: 584 VHQGKIVEKGTHDELIKDPEGPYTQL 609
++ G+IVE+G +E+ K+P+ PYT+
Sbjct: 227 MYAGRIVEEGPVEEIFKNPKHPYTRG 252
|
Length = 316 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 1e-34
Identities = 82/243 (33%), Positives = 128/243 (52%), Gaps = 21/243 (8%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
I + +V R+ A SL + SG AL+G SG+GKST++ ++ PDAG
Sbjct: 2 SIRINNVKKRFGAFGA---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58
Query: 434 VLIDGIDIKKLQLKWIRE-KIGLVSQEPILFA-TSLRENIAYG----KENATDQEIRT-A 486
+ ++G + + +R+ K+G V Q LF ++ +NIA+G KE ++ EIR
Sbjct: 59 IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARV 118
Query: 487 IELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 546
EL + L+ +A + QLSGGQ+QR+A+ARA+ PK+LLLDE ALDA
Sbjct: 119 EELLRLVQ--------LEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 170
Query: 547 ESERIVQDALVKIMTSR--TTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELIKDPE 603
+ + ++ L K+ TTV V H + AD + V++QG+I + G DE+ P
Sbjct: 171 KVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPA 230
Query: 604 GPY 606
+
Sbjct: 231 SRF 233
|
Length = 345 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-34
Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 25/244 (10%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
IE+R ++ KY D + + G+ L+G +G+GK+T++ ++ P SG
Sbjct: 4 VIEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE 61
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNI-----AYGKQGGATEEEIIAA 1152
+L+ ++ K R+++G V QEP L+ E T+R N+ YG EE I
Sbjct: 62 ILVLGYDVVKEPAKV-RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEEL 120
Query: 1153 TEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
E G E ++ LSGG KQR++IA A+L +P++L+LDE TS LD
Sbjct: 121 LELF-----------GLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDP 169
Query: 1213 ESERVVQDALERVMVNR--TTVVVA-HRLTTI-KNADIIAVVKNGVIAEQGSHDALMKIT 1268
ES R + + L R + T++++ H L + D + ++ +G I +G+ + L +
Sbjct: 170 ESRREIWELL-RELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKF 228
Query: 1269 DGAY 1272
G
Sbjct: 229 GGKG 232
|
Length = 293 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 2e-34
Identities = 81/242 (33%), Positives = 126/242 (52%), Gaps = 28/242 (11%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE+ ++ YP + SL + G AL+G SG+GKST++ + +P +G V
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 435 LIDGIDIKKLQ---LKWIREKIGLVSQEPILFA-TSLRENIAYGKENA-----------T 479
LIDG DI KL+ L+ +R +IG++ Q+ L S+ EN+ G+
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 480 DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDE 539
+E + A+ ++++ GL A + QLSGGQ+QR+AIARA+++ PK++L DE
Sbjct: 119 KEEKQRALAA------LERV--GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE 170
Query: 540 ATSALDAESERIVQDALVKIMTSR--TTVVVAHRLTTIR-NADLIAVVHQGKIVEKGTHD 596
++LD S R V D L +I T +V H++ R AD I + G+IV G
Sbjct: 171 PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230
Query: 597 EL 598
EL
Sbjct: 231 EL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 3e-34
Identities = 66/215 (30%), Positives = 98/215 (45%), Gaps = 61/215 (28%)
Query: 1041 ELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVL 1100
E+ +SF+Y R N+ L++ +G+ VALVG +GSGKST++ I P SG +L
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 1101 LDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHN 1160
+D ++ K L LR++
Sbjct: 58 IDGKDIAKLPLEELRRR------------------------------------------- 74
Query: 1161 FISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQD 1220
I +P QLSGGQ+QR+A+ARA+L NP +LLLDE TS LD S + +
Sbjct: 75 -IGYVP------------QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLE 121
Query: 1221 ALERVMV-NRTTVVVAHRLTTIKNA-DIIAVVKNG 1253
L + RT ++V H + A D + V+K+G
Sbjct: 122 LLRELAEEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 4e-34
Identities = 75/232 (32%), Positives = 108/232 (46%), Gaps = 30/232 (12%)
Query: 1040 IELRCVSFKYPTRPD-VQIFRNLCLSIPSGKTVALVGESGSGKST---VIALIERFYDPD 1095
IEL+ +S Y + VQ + + LSI G+ VA+VG SGSGKST ++ ++R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 1096 SGHVLLDNIELPKFKLSWL----RQQMGLVSQEPVLFNE-TIRTNIAY-----GKQGGAT 1145
SG V +D ++ K L R+ +G V Q L + T N+ G
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER 117
Query: 1146 EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDE 1205
E E L +LSGGQ+QR+AIARA+ +PKI+L DE
Sbjct: 118 RERAEELLERVG-------LGDRLNHYPS----ELSGGQQQRVAIARALANDPKIILADE 166
Query: 1206 ATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKNADIIAVVKNGVI 1255
T LD+E+ + V + L + T VVV H + AD I +++G I
Sbjct: 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 4e-34
Identities = 78/222 (35%), Positives = 116/222 (52%), Gaps = 16/222 (7%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE+++++ + + G L V G ++G SGSGKST++ + +PD+G +
Sbjct: 1 IEIKNLHKSFGDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 435 LIDGIDI--KKLQLKWIREKIGLVSQEPILFA--TSLRENIAYGKENATDQEIRTAIELA 490
+IDG+ + K + +R+K+G+V Q+ LF T L ENI A E A
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVL-ENITLAPIKVKGMSKAEAEERA 116
Query: 491 NAAKFIDKLPK-GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESE 549
++ L K GL A + QLSGGQ+QR+AIARA+ NPK++L DE TSALD E
Sbjct: 117 -----LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171
Query: 550 RIVQDALVKIMTSRTT-VVVAHRLTTIRN-ADLIAVVHQGKI 589
V D + + T VVV H + R AD + + G+I
Sbjct: 172 GEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-33
Identities = 72/232 (31%), Positives = 115/232 (49%), Gaps = 43/232 (18%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDN-IELPKFKLS 1112
D ++ + + LS+ G+ V ++G SGSGKST++ + +PDSG + +D K +
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDIL 73
Query: 1113 WLRQQMGLVSQEPVLF-NETIRTNIAYG--KQGGATEEEIIAATE-----------ASNA 1158
LR+++G+V Q+ LF + T+ N+ K ++ E A E A A
Sbjct: 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAE---AREKALELLEKVGLADKA 130
Query: 1159 HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV 1218
+ P QLSGGQ+QR+AIARA+ +PK++L DE TSALD E V
Sbjct: 131 DAY----PA-----------QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL---V 172
Query: 1219 QDALERVMVN-----RTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264
+ L+ VM + T ++V H + + AD + + G I E+G +
Sbjct: 173 GEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
|
Length = 240 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 1e-33
Identities = 77/250 (30%), Positives = 121/250 (48%), Gaps = 29/250 (11%)
Query: 1039 AIELRCVSFKYPTRPDV-QIFRNLCLSIPSGKTVALVGESGSGKST---VIALIERFYDP 1094
+ +R +S Y N+ L I G+T+ +VGESGSGKST ++A +E+ P
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---P 59
Query: 1095 DSGHVLLDNIELPKFKLSW-LRQQMGLVSQEPVL-FN--ETIRTNIA---YGKQGGATEE 1147
SG +LLD L K + + + +V Q+P N T+ ++ +++
Sbjct: 60 SSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQ 119
Query: 1148 EIIAATEASNAHN-FISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEA 1206
I + F+ PH +LSGGQ+QRIAIARA++ PK+L+LDE
Sbjct: 120 RIAELLDQVGLPPSFLDRRPH-----------ELSGGQRQRIAIARALIPEPKLLILDEP 168
Query: 1207 TSALDAESERVVQDALERVMVNR--TTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDA 1263
TSALD + + + L + R T + ++H L +++ D IAV+ NG I E G +
Sbjct: 169 TSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEE 228
Query: 1264 LMKITDGAYA 1273
L+ Y
Sbjct: 229 LLSHPSHPYT 238
|
Length = 252 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 1e-33
Identities = 83/224 (37%), Positives = 122/224 (54%), Gaps = 25/224 (11%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE----K 452
SL V G ++G SGSGKST++ L+ R +P GE+L+DG DI KL +RE K
Sbjct: 48 SLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKK 107
Query: 453 IGLVSQEPILFA-TSLRENIAYGKE-----NATDQEI-RTAIELANAAKFIDKLPKGLDT 505
I +V Q L ++ EN+A+G E A +E A+EL + DK P
Sbjct: 108 ISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN---- 163
Query: 506 MAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS--R 563
+LSGG +QR+ +ARA+ +P ILL+DEA SALD +QD L+++ +
Sbjct: 164 -------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK 216
Query: 564 TTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELIKDPEGPY 606
T V + H L +R D IA++ G+IV+ GT +E++ +P Y
Sbjct: 217 TIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDY 260
|
Length = 386 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-33
Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 20/242 (8%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
IE+R+V R+ + SL +PSG AL+G SGSGK+T++ L+ PD+G
Sbjct: 2 SIEVRNVSKRFGDFVALD---DVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIAYGKENATDQEIRTAIELANA 492
+L G D + ++ +G V Q LF ++ +N+A+G ++ E
Sbjct: 59 ILFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFG------LRVKPRSERPPE 110
Query: 493 AKFIDKLPK-----GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
A+ K+ + LD +A + QLSGGQ+QR+A+ARA+ PK+LLLDE ALDA+
Sbjct: 111 AEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
Query: 548 SERIVQDALVKIM--TSRTTVVVAH-RLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEG 604
+ ++ L ++ TTV V H + + AD + V+++G+I + GT DE+ P
Sbjct: 171 VRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPAS 230
Query: 605 PY 606
P+
Sbjct: 231 PF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-33
Identities = 77/238 (32%), Positives = 124/238 (52%), Gaps = 26/238 (10%)
Query: 1040 IELRCVSFKYP-TRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
IE V+ +Y + V NL L I G+ + L+G SGSGK+T + +I R +P SG
Sbjct: 1 IEFENVTKRYGGGKKAVN---NLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGE 57
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIA-YGKQGGATEEEIIA-ATEA 1155
+ +D ++ + LR+++G V Q+ LF + T+ NIA K +E+I A E
Sbjct: 58 IFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADEL 117
Query: 1156 -----SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL 1210
+ F PH +LSGGQ+QR+ +ARA+ +P +LL+DE AL
Sbjct: 118 LALVGLDPAEFADRYPH-----------ELSGGQQQRVGVARALAADPPLLLMDEPFGAL 166
Query: 1211 DAESERVVQDALERV--MVNRTTVVVAHRL-TTIKNADIIAVVKNGVIAEQGSHDALM 1265
D + +Q+ +R+ + +T V V H + + AD IA++KNG I + G+ D ++
Sbjct: 167 DPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-33
Identities = 78/234 (33%), Positives = 128/234 (54%), Gaps = 12/234 (5%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE++++ YP Q +L + G A++G SG+GKST++ + DP +GE+
Sbjct: 4 IEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 435 LIDGIDIKKL---QLKWIREKIGLVSQEPILFA-TSLRENIAYGKEN--ATDQEIRTAIE 488
L +G+ I KL +L+ +R IG++ Q+ L S+ EN+ G+ +T + +
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121
Query: 489 LANAAKFIDKLPK-GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
+ A+ +D L + G+ A + + LSGGQ+QR+AIARA+++ PKI+L DE ++LD E
Sbjct: 122 KEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPE 181
Query: 548 SERIVQDALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598
S + V D L I T +V H++ + AD I + G+IV G EL
Sbjct: 182 SAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 3e-33
Identities = 73/238 (30%), Positives = 122/238 (51%), Gaps = 25/238 (10%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IE VS +Y + ++ L+I G+ + L+G SGSGK+T + +I R +P SG +
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAY-GKQGGATEEEIIAATEAS- 1156
L+D ++ LR+++G V Q+ LF + T+ NIA K G +E I +
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELL 118
Query: 1157 -----NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
+ + PH +LSGGQ+QR+ +ARA+ +P ILL+DE ALD
Sbjct: 119 DLVGLDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
Query: 1212 AESERVVQDALERVM--VNRTTVVVAHRLT-TIKNADIIAVVKNGVIAEQGSHDALMK 1266
+ + +Q+ ++ + + +T V V H + +K AD IAV+ G I + + D ++
Sbjct: 168 PITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225
|
Length = 309 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 3e-33
Identities = 75/239 (31%), Positives = 120/239 (50%), Gaps = 27/239 (11%)
Query: 368 LEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFY 427
L K E +L++V SL V G ++G +GSGKS ++ + F
Sbjct: 6 LSKDWKEFKLKNV----------------SLEVERGDYFVILGPTGSGKSVLLETIAGFI 49
Query: 428 DPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIAYGKENATDQEIRTA 486
PD+G++L++G DI L + I V Q LF ++ +NIAYG + +
Sbjct: 50 KPDSGKILLNGKDIT--NLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIE 107
Query: 487 IELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 546
++ A+ + G+D + LSGG++QR+AIARA++ NPKILLLDE SALD
Sbjct: 108 RKVLEIAEML-----GIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDV 162
Query: 547 ES-ERIVQDALVKIMTSRTTVV-VAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDP 602
+ E++ ++ TV+ V H AD +A++ GK+++ G +E+ K P
Sbjct: 163 RTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 9e-33
Identities = 78/216 (36%), Positives = 124/216 (57%), Gaps = 15/216 (6%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLV 456
+L VP+G+ AL+G SGSGKST++ ++ PD+G + ++G D ++ + KIG V
Sbjct: 20 NLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DRKIGFV 77
Query: 457 SQEPILFA-TSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPK--GLDTMAGEHGTQ 513
Q LF ++R+NIA+G EIR + A+ +++L + L+ + + Q
Sbjct: 78 FQHYALFKHLTVRDNIAFG------LEIRKHPKAKIKAR-VEELLELVQLEGLGDRYPNQ 130
Query: 514 LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAH- 570
LSGGQ+QR+A+ARA+ P++LLLDE ALDA+ + ++ L K+ TTV V H
Sbjct: 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHD 190
Query: 571 RLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPY 606
+ + AD I V+ GKI + G+ DE+ P P+
Sbjct: 191 QEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 2e-32
Identities = 71/241 (29%), Positives = 122/241 (50%), Gaps = 42/241 (17%)
Query: 395 GFSLHVPSGTTAALVGQSGSGKST----VISLVERFYDPDAGEVLIDGIDIKKL---QLK 447
S V G +VG+SGSGKST ++ L+ +GEV++DG D+ L +++
Sbjct: 27 DVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMR 86
Query: 448 WIR-EKIGLVSQEPILFATSL----------RENIAYGKENATDQEIRTAIE------LA 490
+R ++I ++ Q+P TSL RE + + + + + A+E L
Sbjct: 87 KLRGKRIAMIFQDP---MTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLP 143
Query: 491 NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER 550
+ + D+ P H QLSGG +QR+ IA A+ PK+L+ DE T+ALD ++
Sbjct: 144 DPER-RDRYP---------H--QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQA 191
Query: 551 IVQDALVKIM--TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYT 607
+ D L + + + H L + AD + V+++G+IVE G +E++ +P+ PYT
Sbjct: 192 QILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYT 251
Query: 608 Q 608
+
Sbjct: 252 R 252
|
Length = 539 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 4e-32
Identities = 80/242 (33%), Positives = 123/242 (50%), Gaps = 27/242 (11%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IE+ +S YP + +++ LSI G+ VAL+G SG+GKST++ + +P SG V
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 1100 LLDNIE---LPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAYGKQG----------GAT 1145
L+D + L L LR+Q+G++ Q+ L ++ N+ G+ G
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 1146 EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDE 1205
+EE A A L Y+ R QLSGGQ+QR+AIARA+++ PK++L DE
Sbjct: 119 KEEKQRALAALERVGL---LDKAYQ-----RADQLSGGQQQRVAIARALMQQPKLILADE 170
Query: 1206 ATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIK-NADIIAVVKNGVIAEQGSHD 1262
++LD S R V D L+R+ T +V H++ + AD I +K+G I G
Sbjct: 171 PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230
Query: 1263 AL 1264
L
Sbjct: 231 EL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 122 bits (310), Expect = 5e-32
Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 49/219 (22%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IE+R +S +Y + ++ L++ G+ L+G +G+GK+T+I +I PDSG +
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAYGKQGGATEEEIIAATEASNA 1158
+ ++ K +++++G + +EP L+ T+R N+
Sbjct: 58 KVLGKDIKKEPEE-VKRRIGYLPEEPSLYENLTVRENL---------------------- 94
Query: 1159 HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV 1218
+LSGG KQR+A+A+A+L +P++L+LDE TS LD ES R
Sbjct: 95 --------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREF 134
Query: 1219 QDALERVMVNRTTVVVA-HRLTTIKN-ADIIAVVKNGVI 1255
+ L + T++++ H L + D +A++ NG I
Sbjct: 135 WELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 5e-32
Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 25/226 (11%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL---QLKWI-REK 452
L + G ++G SGSGKST + ++ R +P AG++ IDG +I K +L+ + R+K
Sbjct: 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKK 72
Query: 453 IGLVSQEPILFA-TSLRENIAYG------KENATDQEIRTAIELANAAKFIDKLPKGLDT 505
IG+V Q+ LF ++ +N + G E ++ ++L ++ + P
Sbjct: 73 IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD---- 128
Query: 506 MAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS--R 563
+LSGG +QR+ +ARA+ P ILL+DEA SALD +QD L K+ + +
Sbjct: 129 -------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQK 181
Query: 564 TTVVVAHRL-TTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
T V + H L IR D I ++ G+IV+ GT DE++++P Y +
Sbjct: 182 TIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVE 227
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 6e-32
Identities = 74/228 (32%), Positives = 107/228 (46%), Gaps = 33/228 (14%)
Query: 1053 PDVQIFRNLCLSIPSGKTVALVGESGSGKST---VIALIERFYDPDSGHVLLDNIELPKF 1109
++ L I SG+ VAL+G SG+GKST +IA +E PD+G + L+ L F
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVL--F 67
Query: 1110 KLSWLRQQ---MGLVSQEPVLF-NETIRTNIAYG-KQGGATEEEIIAATEAS------NA 1158
+S L + +G V Q LF + T+ NIA+G K E
Sbjct: 68 DVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQL 127
Query: 1159 HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV 1218
P QLSGGQ+QR+A+ARA+ PK+LLLDE ALDA+ + +
Sbjct: 128 EGLADRYPA-----------QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL 176
Query: 1219 QDALERVM--VNRTTVVVAHRLT-TIKNADIIAVVKNGVIAEQGSHDA 1263
+ L ++ + TTV V H ++ AD + V+ G I + G D
Sbjct: 177 RRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224
|
Length = 345 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 8e-32
Identities = 75/232 (32%), Positives = 121/232 (52%), Gaps = 16/232 (6%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD----- 1093
AIE+ ++ Y + + +N+ L IP + AL+G SG GKST++ + R D
Sbjct: 1 AIEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57
Query: 1094 PDSGHVLLD--NIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG--KQGGATEEEI 1149
G VL D +I K + LR+++G+V Q+P F +I NIAYG G ++E+
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 1150 IAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSA 1209
E S +AL + + + + LSGGQ+QR+ IARA+ P++LLLDE TSA
Sbjct: 118 DEIVEESLKK---AALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSA 174
Query: 1210 LDAESERVVQDALERVMVNRTTVVVAHRLT-TIKNADIIAVVKNGVIAEQGS 1260
LD + +++ ++ + T V+V H + + +D A +G + E G
Sbjct: 175 LDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 1e-31
Identities = 70/206 (33%), Positives = 98/206 (47%), Gaps = 27/206 (13%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
+E+ VS + + ++ LS+ G+ VA++G SG GKST++ LI P SG
Sbjct: 3 LLEIEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFN-ETIRTNIAYG--KQGGATEEEIIAATEA 1155
VLLD + +G V QE L T+ N+A G +G + E A E
Sbjct: 60 VLLDGRPVTG-----PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKEL 114
Query: 1156 SNA---HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
F PH QLSGG +QR+AIARA+ PK+LLLDE ALDA
Sbjct: 115 LELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDA 163
Query: 1213 ESERVVQDALERVM--VNRTTVVVAH 1236
+ +QD L R+ +T ++V H
Sbjct: 164 LTREELQDELLRLWEETRKTVLLVTH 189
|
Length = 248 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 1e-31
Identities = 84/242 (34%), Positives = 123/242 (50%), Gaps = 40/242 (16%)
Query: 1040 IELRCVSFKYPT-RPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
IEL+ +S +P + N+ L IP+G+ ++G SG+GKST+I I P SG
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1099 VLLDNIELPKFK---LSWLRQQMGLVSQEPVLFN----ETIRTNIAYG-KQGGATEEEII 1150
VL+D +L L R+Q+G++ Q FN T+ N+A + G + EI
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQH---FNLLSSRTVFDNVALPLELAGTPKAEIK 118
Query: 1151 AATEA-------SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLL 1203
A S+ + A QLSGGQKQR+AIARA+ NPK+LL
Sbjct: 119 ARVTELLELVGLSDKADRYPA--------------QLSGGQKQRVAIARALASNPKVLLC 164
Query: 1204 DEATSALDAESERVVQDALERVMVNR----TTVVVAHRLTTIKN-ADIIAVVKNGVIAEQ 1258
DEATSALD + R + + L+ +NR T V++ H + +K D +AV+ G + EQ
Sbjct: 165 DEATSALDPATTRSILELLKD--INRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222
Query: 1259 GS 1260
G+
Sbjct: 223 GT 224
|
Length = 343 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 1e-31
Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 17/224 (7%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IE + VS+ + +I +++ + G +VG SG+GKST+I LI R DP G +
Sbjct: 4 IEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAH 1159
L+D +++ + LR+++G+V Q+P LF T++ NI YG ++ + +
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGP--------MLKGEKNVDVE 112
Query: 1160 NFISALPHGYETNVGERGVQ-LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV 1218
++S + G R V+ LSGG+ QR++IAR + NP++LLLDE TSALD S ++
Sbjct: 113 YYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII 170
Query: 1219 QDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259
++ + ++ +N T + + H + K D A + G++ E
Sbjct: 171 EELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 1e-31
Identities = 79/273 (28%), Positives = 135/273 (49%), Gaps = 38/273 (13%)
Query: 375 IELRDVYFRYP--ARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
I + + FRYP A ++ S V G A+VG +GSGKST+ L+ P+AG
Sbjct: 6 IRVEHISFRYPDAATYALK---DVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 433 EVLIDGIDIKKLQLKWIREKIGLVSQEP--ILFATSLRENIAYGKEN---ATDQEIR--- 484
+ + G+ + + + +R ++G+V Q P ++++++A+G EN ++ +
Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVD 122
Query: 485 TAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
A+ F+++ P +LSGGQKQR+AIA + P I++LDEATS L
Sbjct: 123 QALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAGVLALQPDIIILDEATSML 171
Query: 545 DAESERIVQDALVKIMT--SRTTVV-VAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKD 601
D R V + V+ + TV+ + H L AD + V+++G+I+E+GT +E+ K
Sbjct: 172 DPRGRREVLET-VRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230
Query: 602 PEG--------PYTQLVRLQEGSKEAEDALATD 626
P++ V+L+E K L
Sbjct: 231 GHMLQEIGLDVPFS--VKLKELLKRNGILLPNT 261
|
Length = 279 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-31
Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 27/232 (11%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
+EL+ V + ++ +++ L I G+ V L+G SG GKST++ +I +P SG
Sbjct: 3 ELELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYG-KQGGATEEEI-----IA 1151
+L+D ++ ++ + +V Q L+ + T+ NIA+G K G + EI
Sbjct: 60 ILIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV 117
Query: 1152 ATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
A + + ++ P +QLSGGQ+QR+A+ARA+++ PK+ LLDE S LD
Sbjct: 118 A-KLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD 165
Query: 1212 AESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
A+ +++ ++++ + TT+ V H AD I V+ +G I + G+
Sbjct: 166 AKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGT 217
|
Length = 338 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-31
Identities = 70/231 (30%), Positives = 115/231 (49%), Gaps = 30/231 (12%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+EL +V R+ + +L + G L+G SG GK+T + ++ +P +G +
Sbjct: 1 VELENVTKRFGNVTALD---DLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIAYG------KENATDQEIRTAI 487
I G D+ L K I +V Q L+ ++ +NIA+G ++ D+ +R
Sbjct: 58 YIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
EL +D+ PK QLSGGQ+QR+A+ RAI++ PK+ L+DE S LDA+
Sbjct: 116 ELLQIEHLLDRKPK-----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
Query: 548 SERIVQDALVKIMT--SRTTVVVAHRLT---TIRNADLIAVVHQGKIVEKG 593
++ L ++ TT+ V H T+ AD IAV++ G+I + G
Sbjct: 165 LRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTM--ADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 3e-31
Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 34/227 (14%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE +V YP G ++ + +G LVG SG+GKST++ L+ + P +G +
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 435 LIDGIDIKKL---QLKWIREKIGLVSQEPILFAT-SLRENIAYGKE--NATDQEIR---- 484
++G D+ L + ++R KIG+V Q+ L ++ EN+A+ E +EIR
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 485 TAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
A+EL + LP +LSGG++QR+AIARAI+ +P IL+ DE T L
Sbjct: 119 AALELVGLSHKHRALP-----------AELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
Query: 545 DAESERIVQDALVKIMTSRTTVVVA-----------HRLTTIRNADL 580
D ++ + + L KI + TTVVVA HR+ + L
Sbjct: 168 DPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 3e-31
Identities = 72/233 (30%), Positives = 116/233 (49%), Gaps = 34/233 (14%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
I VS YP + R++ IP G+ V L G SG+GKST++ LI P G +
Sbjct: 2 IRFENVSKAYPGGR--EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 1100 LLDNIELPKFK---LSWLRQQMGLVSQE-PVLFNETIRTNIAY-----GKQGGATEEEII 1150
L++ +L + K + +LR+Q+G+V Q+ +L + T+ N+A GK +
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 1151 AATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL 1210
+ + ALP QLSGG++QR+AIARA++ P +LL DE T L
Sbjct: 120 EVLDLVGLKHKARALP-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 1211 DAESERVVQDALERVMVNR--TTVVVA-HRLTTIKNADIIAVVKNGVIA-EQG 1259
D + + E +NR TTV++A H + +++ +++ V+A E G
Sbjct: 169 DPDLSWEIMRLFEE--INRLGTTVLMATH------DLELVNRMRHRVLALEDG 213
|
Length = 223 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 3e-31
Identities = 81/230 (35%), Positives = 125/230 (54%), Gaps = 18/230 (7%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL---Q 445
+Q SLHVP+G ++G SG+GKST+I V P +G V++DG D+ L +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 446 LKWIREKIGLVSQE-PILFATSLRENIAYGKE--NATDQEIRTAI-ELANAAKFIDKLPK 501
L R +IG++ Q +L + ++ N+A E N EI+ + EL DK
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDK--- 133
Query: 502 GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKI-- 559
+ + LSGGQKQR+AIARA+ NPK+LL DEATSALD + + + + L +I
Sbjct: 134 -----HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINR 188
Query: 560 MTSRTTVVVAHRLTTI-RNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
T +++ H + + R D +AV+ G+++E+GT E+ P+ P Q
Sbjct: 189 RLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQ 238
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 4e-31
Identities = 70/234 (29%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 1055 VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELP--KFKLS 1112
V+ ++ + G+T+ LVGESGSGKST+ ++ P SG ++ D +L +L
Sbjct: 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELR 363
Query: 1113 WLRQQMGLVSQEPVLF---NETIRTNIA-----YGKQGGATEEEIIAA--TEASNAHNFI 1162
LR+++ +V Q+P T+ +A +G GA +A F+
Sbjct: 364 RLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFL 423
Query: 1163 SALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDAL 1222
PH +LSGGQ+QR+AIARA+ PK+L+LDE SALD + V + L
Sbjct: 424 DRYPH-----------ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLL 472
Query: 1223 ERVMVNR--TTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITDGAYA 1273
+ + T + ++H L ++ AD +AV+ +G I E+G + + + Y
Sbjct: 473 KDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYT 526
|
Length = 539 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 4e-31
Identities = 81/242 (33%), Positives = 125/242 (51%), Gaps = 32/242 (13%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IEL +V Y + G SL + G L+G SG GK+T++ L+ F P +GE+
Sbjct: 1 IELENVSKFYGGFVALD---GVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIAYG------KENATDQEIRTAI 487
L+DG DI L + + V Q LF ++ ENIA+G + + + A+
Sbjct: 58 LLDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
+L + ++ P +QLSGGQ+QR+AIARA++ PK+LLLDE ALD +
Sbjct: 116 DLVQLEGYANRKP-----------SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
Query: 548 SERIVQDALVKI--MTSRTTVVVAH----RLTTIRNADLIAVVHQGKIVEKGTHDELIKD 601
+ +Q L ++ T V V H LT +D IAV+++GKI + GT +E+ ++
Sbjct: 165 LRKDMQLELKRLQKELGITFVFVTHDQEEALTM---SDRIAVMNKGKIQQIGTPEEIYEE 221
Query: 602 PE 603
P
Sbjct: 222 PA 223
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 5e-31
Identities = 78/256 (30%), Positives = 131/256 (51%), Gaps = 40/256 (15%)
Query: 1034 SSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD 1093
+S IE+R V+ + R I + L +P G+ +A++G SGSGKST++ LI
Sbjct: 3 ASPEPLIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR 59
Query: 1094 PDSGHVLLDNIELPKFK---LSWLRQQMGLVSQEPVLFNE-TIRTNIAYG-KQGGATEEE 1148
PD G +L+D ++P+ L +R++MG++ Q+ LF+ T+ N+A+ ++ E
Sbjct: 60 PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPES 119
Query: 1149 IIAATEASNAHNFISALPHGYETNVGERGV-------QLSGGQKQRIAIARAVLKNPKIL 1201
+I + VG RG +LSGG ++R+A+ARA+ +P++L
Sbjct: 120 LIRELVLMK----LEL--------VGLRGAAADLYPSELSGGMRKRVALARAIALDPELL 167
Query: 1202 LLDEATSALDAESERV-------VQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNG 1253
LDE TS LD S V + DAL T ++V H L ++ AD +AV+ +G
Sbjct: 168 FLDEPTSGLDPISAGVIDELIRELNDAL-----GLTVIMVTHDLDSLLTIADRVAVLADG 222
Query: 1254 VIAEQGSHDALMKITD 1269
+ +G+ + L+ D
Sbjct: 223 KVIAEGTPEELLASDD 238
|
Length = 263 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 5e-31
Identities = 71/211 (33%), Positives = 111/211 (52%), Gaps = 32/211 (15%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IE++ + + + + + L++ G+ V ++G SGSGKST++ I +PDSG +
Sbjct: 1 IEIKNLHKSFGDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 1100 LLDNIEL--PKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYG--KQGGATEEEIIAATE 1154
++D ++L K ++ LRQ++G+V Q+ LF + T+ NI K G ++ E
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL 117
Query: 1155 ASNAH----NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL 1210
+ A P QLSGGQ+QR+AIARA+ NPK++L DE TSAL
Sbjct: 118 ELLEKVGLADKADAYPA-----------QLSGGQQQRVAIARALAMNPKVMLFDEPTSAL 166
Query: 1211 DAESERVVQDALERVMVN-----RTTVVVAH 1236
D E +V + L+ VM + T VVV H
Sbjct: 167 DPE---LVGEVLD-VMKDLAEEGMTMVVVTH 193
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 6e-31
Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 12/227 (5%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+E+ + FRY AR + S V G AL+G +G+GKST+ SL+ R Y G++
Sbjct: 2 LEVAGLSFRYGARRALD---DVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPIL-FATSLRENIAYGKENATDQEIRTAIELANAA 493
+ G D+++ + ++G+V Q+P L S+R+N+ Y +A + A A A
Sbjct: 59 SVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRY---HAALHGLSRAEARARIA 114
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER-IV 552
+ + +L GL A + +L+GG ++R+ IARA+L P +LLLDE T LD S I
Sbjct: 115 ELLARL--GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172
Query: 553 QDALVKIMTSRTTVVVA-HRLTTIRNADLIAVVHQGKIVEKGTHDEL 598
+V+ A H + I D + V+H+G+++ G EL
Sbjct: 173 AHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 8e-31
Identities = 74/241 (30%), Positives = 137/241 (56%), Gaps = 7/241 (2%)
Query: 1038 GAIELRCVSFKYPTRPDVQ-IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS 1096
G+I+ V +Y RP++ + L I + V +VG +G+GKS+++ + R + +
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 1097 GHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNI-AYGKQGGATEEEIIAATEA 1155
G +L+D ++ KF L LR+ +G++ Q PVLF+ T+R N+ + + A ++ + E
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDA---DLWESLER 1350
Query: 1156 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE 1215
++ + I G + V E G S GQ+Q +++ARA+L+ KIL+LDEAT+A+D ++
Sbjct: 1351 AHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTD 1410
Query: 1216 RVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
++Q + + T +++AHRL TI + D I V+ G + E + + L+ A++ +
Sbjct: 1411 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKM 1470
Query: 1276 V 1276
V
Sbjct: 1471 V 1471
|
Length = 1622 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 8e-31
Identities = 69/214 (32%), Positives = 109/214 (50%), Gaps = 24/214 (11%)
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ-- 1116
++ L + G+ ++G SGSGKST++ I R +P SG VL+D ++ LR+
Sbjct: 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELR 100
Query: 1117 --QMGLVSQEPVLF-NETIRTNIAYGK--QGGATEEEIIAATEASNA---HNFISALPHG 1168
++ +V Q L + T+ N+A+G QG E A EA + P
Sbjct: 101 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD- 159
Query: 1169 YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--M 1226
+LSGG +QR+ +ARA+ +P ILL+DEA SALD R +QD L R+
Sbjct: 160 ----------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 1227 VNRTTVVVAHRLT-TIKNADIIAVVKNGVIAEQG 1259
+ +T V + H L ++ D IA++K+G + + G
Sbjct: 210 LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVG 243
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-30
Identities = 70/235 (29%), Positives = 114/235 (48%), Gaps = 36/235 (15%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
I +V YP E S H+P G L G SG+GKST++ L+ P G++
Sbjct: 2 IRFENVSKAYPGGRE--ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 435 LIDGIDIKKL---QLKWIREKIGLVSQE-PILFATSLRENIAY-----GKENATDQE-IR 484
L++G D+ +L ++ ++R +IG+V Q+ +L ++ EN+A GK + +
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 485 TAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
++L LP +QLSGG++QR+AIARAI+ P +LL DE T L
Sbjct: 120 EVLDLVGLKHKARALP-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 545 DAE-SERIVQDALVKIMTSRTTVVVA-----------HRLTTIRNADLIAVVHQG 587
D + S I++ +I TTV++A HR+ + + L+ +G
Sbjct: 169 DPDLSWEIMR-LFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRG 222
|
Length = 223 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-30
Identities = 81/237 (34%), Positives = 125/237 (52%), Gaps = 19/237 (8%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS-- 1096
AIE+R ++ Y D +++ L IP K AL+G SG GKST++ + R D
Sbjct: 7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGA 63
Query: 1097 ---GHVLLD--NIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG-KQGGATEEEII 1150
G VLLD NI PK + LR+++G+V Q+P F +I N+AYG + G ++E+
Sbjct: 64 RVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELD 123
Query: 1151 AATEAS--NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATS 1208
E+S A AL + + + + LSGGQ+QR+ IARA+ P++LL+DE TS
Sbjct: 124 EIVESSLKKA-----ALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTS 178
Query: 1209 ALDAESERVVQDALERVMVNRTTVVVAHRLT-TIKNADIIAVVKNGVIAEQGSHDAL 1264
ALD S +++ + + T V+V H + + +D A G + E G D +
Sbjct: 179 ALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235
|
Length = 253 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-30
Identities = 79/262 (30%), Positives = 129/262 (49%), Gaps = 27/262 (10%)
Query: 363 TSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISL 422
+ +I++R++ F Y + +L + A +G SG GKST++
Sbjct: 2 AMMSMVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRT 58
Query: 423 VERFYD--PD---AGEVLIDGIDI--KKLQLKWIREKIGLVSQEPILFATSLRENIAYG- 474
R Y+ P+ GE+L+DG +I K + +R K+G+V Q+P F S+ +NIA+G
Sbjct: 59 FNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGV 118
Query: 475 ----KENATDQEIRTAIELANAA---KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARA 527
K + + + R L AA + DKL + G LSGGQ+QR+ IAR
Sbjct: 119 RLFEKLSRAEMDERVEWALTKAALWNEVKDKL--------HQSGYSLSGGQQQRLCIARG 170
Query: 528 ILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRL-TTIRNADLIAVVHQ 586
I P++LLLDE SALD S +++ + ++ T V+V H + R +D A ++
Sbjct: 171 IAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYL 230
Query: 587 GKIVEKGTHDELIKDPEGPYTQ 608
G+++E G D + P T+
Sbjct: 231 GELIEFGNTDTIFTKPAKKQTE 252
|
Length = 260 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-30
Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 19/259 (7%)
Query: 362 DTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVIS 421
+ IT + E + +D++ Y + + G + AL+G SGSGKST +
Sbjct: 8 ERHIITFPEEEIALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLR 64
Query: 422 LVERFYDPDA-----GEVLIDGIDI--KKLQLKWIREKIGLVSQEPILFATSLRENIAYG 474
+ R D G++L GIDI K++ + +R+ IG+V Q P FA S+ ENI +
Sbjct: 65 SLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFA 124
Query: 475 KENA--TD-QEIRTAIELA-NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILK 530
E A D + + +E + A D++ L A LSGGQ+QR+ IARAI
Sbjct: 125 LERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSA----LTLSGGQQQRLCIARAIAV 180
Query: 531 NPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLT-TIRNADLIAVVHQGKI 589
P ILL+DE SALD S +++ + ++ + T ++V H + R +D A + G +
Sbjct: 181 KPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDL 240
Query: 590 VEKGTHDELIKDPEGPYTQ 608
+E + +P+ T
Sbjct: 241 IEYDKTRNIFTNPKLQSTN 259
|
Length = 267 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 71/249 (28%), Positives = 126/249 (50%), Gaps = 16/249 (6%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+E+ D+ Y +VQ S G L+G++G+GK+T++ ++ PD+G+V
Sbjct: 2 LEVTDLTKSYG--SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQE-PILFATSLRENIAYGKENATDQEIRTAIELANAA 493
IDG+D + ++R KIG++ E + + REN+ Y +A +
Sbjct: 60 TIDGVDTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
K + L + LD GE S G KQ++AIARA++ +P IL+LDE TS LD + R
Sbjct: 119 KRLQ-LLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173
Query: 554 DALVKIMTS-RTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK-----DPEGPY 606
D + ++ R + +H + + D + V+H+G++V +G+ + L + E +
Sbjct: 174 DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIF 233
Query: 607 TQLVRLQEG 615
++L+EG
Sbjct: 234 AFALKLEEG 242
|
Length = 245 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-30
Identities = 83/221 (37%), Positives = 124/221 (56%), Gaps = 15/221 (6%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE----K 452
SL + G ++G SGSGKST++ L+ R +P G+VLIDG+DI K+ +RE K
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 453 IGLVSQEPILFA-TSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPK-GLDTMAGEH 510
I +V Q L ++ +N A+G E+ K +D L + GL+ A +
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFG------MELAGINAEERREKALDALRQVGLENYAHSY 161
Query: 511 GTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVV 568
+LSGG +QR+ +ARA+ NP ILL+DEA SALD +QD LVK+ RT V +
Sbjct: 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI 221
Query: 569 AHRL-TTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
+H L +R D IA++ G++V+ GT DE++ +P Y +
Sbjct: 222 SHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 3e-30
Identities = 84/249 (33%), Positives = 127/249 (51%), Gaps = 23/249 (9%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD--PDA 431
+I+ RDV F Y + G S+ + + A +G SG GKST + L R D P
Sbjct: 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59
Query: 432 ---GEVLIDGIDI--KKLQLKWIREKIGLVSQEPILFATSLRENIAYG------KENATD 480
GE+ IDG +I K +Q+ +R+ +G+V Q P F S+ EN+AYG K+NA
Sbjct: 60 RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFI 119
Query: 481 QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEA 540
++ E A D++ L E LSGGQ+QR+ IARA+ +P +LL+DE
Sbjct: 120 RQ--RVEETLKGAALWDEVKDKLK----ESAFALSGGQQQRLCIARAMAVSPSVLLMDEP 173
Query: 541 TSALDAESERIVQDALVKIMTSRTTVVVAHRL-TTIRNADLIAVVHQGKIVEKGTHDELI 599
SALD S V++ + ++ T V+V H + R +D A + G++VE ++
Sbjct: 174 ASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233
Query: 600 KDPEGPYTQ 608
+PE TQ
Sbjct: 234 TNPEKEATQ 242
|
Length = 250 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 3e-30
Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 22/205 (10%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELP----KF 1109
D I +L L+I GK A++GESGSGKST++ +I DSG V L+ E P K
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKK 69
Query: 1110 KLSWLRQQMGLVSQEPVLF-NETIRTNIAYG-----KQGGATEEEIIAATEASNAHNFIS 1163
+ R+++G + Q L NET+ N+ G E+ A E + +
Sbjct: 70 ASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK 129
Query: 1164 ALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAE-SERVVQDAL 1222
+ +LSGG++QR+A+ARA+LK P ++L DE T +LD + + V+ L
Sbjct: 130 QKIY-----------ELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLL 178
Query: 1223 ERVMVNRTTVVVAHRLTTIKNADII 1247
E +T ++V H K AD +
Sbjct: 179 ELNDEGKTIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (301), Expect = 4e-30
Identities = 83/249 (33%), Positives = 136/249 (54%), Gaps = 25/249 (10%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD--PDA- 431
IE+RD+ + +V++ G +L +P T AL+G SGSGKST++ + R + P+A
Sbjct: 4 IEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 432 --GEVLIDGIDIKKLQLKWIREKIGLVSQEPILFAT-SLRENIAYG--------KENATD 480
GEV +DG DI K+ + +R ++ +V Q P S+ EN+A G +
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ 120
Query: 481 QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEA 540
+ +R A+E A+ D++ LD AG +LSGGQ+QR+ IARA+ P++LL DE
Sbjct: 121 ERVRWALE---KAQLWDEVKDRLDAPAG----KLSGGQQQRLCIARALAFQPEVLLADEP 173
Query: 541 TSALDAESERIVQDALVKIMTSRTTVVVAH-RLTTIRNADLIAVVHQGKIVEKGTHDELI 599
T+ LD E+ ++ +++ T V+V H R +D +A +++G+IVE G E+
Sbjct: 174 TANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233
Query: 600 KDPEGPYTQ 608
+P T+
Sbjct: 234 TNPRHELTE 242
|
Length = 250 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-30
Identities = 81/247 (32%), Positives = 125/247 (50%), Gaps = 31/247 (12%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-DA-- 431
+E+R++ Y + Q S+ +P A +G SG GKST++ R D D
Sbjct: 26 LEVRNLNLFYGDK---QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 432 --GEVLIDGIDI--KKLQLKWIREKIGLVSQEPILFATSLRENIAYG-------KENATD 480
GE+ +DG +I KK+ + +R ++G+V Q P F S+ EN+ YG D
Sbjct: 83 IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLD 142
Query: 481 QEIRTAIELANAA---KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLL 537
+ + + L AA + D+L E+ LSGGQ+QR+ IARAI P++LLL
Sbjct: 143 EAVERS--LRGAALWDEVKDRL--------HENAFGLSGGQQQRLVIARAIAIEPEVLLL 192
Query: 538 DEATSALDAESERIVQDALVKIMTSRTTVVVAHRL-TTIRNADLIAVVHQGKIVEKGTHD 596
DE TSALD S +++ + ++ + T V+V H + R +D A ++ GK+VE G D
Sbjct: 193 DEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252
Query: 597 ELIKDPE 603
L P
Sbjct: 253 TLFTSPA 259
|
Length = 272 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 4e-30
Identities = 78/237 (32%), Positives = 118/237 (49%), Gaps = 32/237 (13%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+ L DV F Y P F L VP+G A++G SG+GKST+++L+ F P +GE+
Sbjct: 2 LALDDVRFSYGHLP----MR-FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIAYG-----KENATDQE-IRTAI 487
LI+G+D + ++ QE LFA ++ +NI G K NA +E + A
Sbjct: 57 LINGVDH--TASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA 114
Query: 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALD-- 545
A F+ +LP +LSGGQ+QR+A+AR +++ ILLLDE SALD
Sbjct: 115 AQVGLAGFLKRLP-----------GELSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163
Query: 546 --AESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELI 599
AE +V + T ++V H AD + + G+I +G+ EL+
Sbjct: 164 LRAEMLALVSQ--LCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (301), Expect = 4e-30
Identities = 71/214 (33%), Positives = 121/214 (56%), Gaps = 16/214 (7%)
Query: 407 ALVGQSGSGKSTVISLVERFYD--PD---AGEVLIDGIDI--KKLQLKWIREKIGLVSQE 459
A++G SG GK+T++ + R D P G++ G DI +L + R+K+G+V Q+
Sbjct: 33 AIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQK 92
Query: 460 PILFATSLRENIAYGKE--NATDQEIRTAI--ELANAAKFIDKLPKGLDTMAGEHGTQLS 515
P F S+ +N+A+G + I E A D++ L+ + GT+LS
Sbjct: 93 PTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELN----KPGTRLS 148
Query: 516 GGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLT-T 574
GGQ+QR+ IARA+ P+++LLDE TSALD + + ++ L ++ + T V+V H +
Sbjct: 149 GGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQA 208
Query: 575 IRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
IR AD IA +++G+++E G E+++ P+ T+
Sbjct: 209 IRIADYIAFMYRGELIEYGPTREIVERPKNKLTE 242
|
Length = 250 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 5e-30
Identities = 75/241 (31%), Positives = 122/241 (50%), Gaps = 31/241 (12%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
IE++ +S YP Q +++ L I G+ VA++G SG+GKST++ + DP SG
Sbjct: 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 1099 VLLDNIE---LPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAYGKQGGAT--------- 1145
+L + ++ L +L LR+ +G++ Q+ L ++ N+ G+ G +
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120
Query: 1146 --EEEIIAATEASNAHNFISALPH-GYETNVGERGVQLSGGQKQRIAIARAVLKNPKILL 1202
E++ A + AL G +R LSGGQ+QR+AIARA+++ PKI+L
Sbjct: 121 SKEDKAQA----------LDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIIL 170
Query: 1203 LDEATSALDAESERVVQDALERVMVNR--TTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259
DE ++LD ES + V D L+ + T +V H++ K AD I +K G I G
Sbjct: 171 ADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230
Query: 1260 S 1260
Sbjct: 231 P 231
|
Length = 258 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 5e-30
Identities = 84/257 (32%), Positives = 134/257 (52%), Gaps = 41/257 (15%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE ++V + Q+ L++ G ++G SGSGKST++ + + + +G++
Sbjct: 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 435 LIDGIDIK--KLQLKWIREKIGLVSQEPILFA--TSLRENIAYG--------KENATDQE 482
++DG+ + K+ + IR++ G+V Q+ LF T+L EN+ +G KE A Q
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTAL-ENVMFGPLRVRGASKEEAEKQ- 116
Query: 483 IRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATS 542
A EL + K+ GL A + ++LSGGQ+QR+AIARA+ PK++L DE TS
Sbjct: 117 ---AREL------LAKV--GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTS 165
Query: 543 ALDAESE----RIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDE 597
ALD E +++QD + M T V+V H + A + + +G+I E G
Sbjct: 166 ALDPELRHEVLKVMQDLAEEGM---TMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQV 222
Query: 598 LIKDPEGPYTQLVRLQE 614
LIK+P RLQE
Sbjct: 223 LIKNPPSQ-----RLQE 234
|
Length = 240 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 5e-30
Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 27/247 (10%)
Query: 372 EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD--P 429
G+I ++D+ Y + Q +L + AL+G SG GKST + + R D P
Sbjct: 1 MGKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP 57
Query: 430 DA---GEVLIDGIDIKKLQLKWI--REKIGLVSQEPILFATSLRENIAYG------KENA 478
GEVL+DG DI K + R+++G+V Q+P F S+ +N+AYG K+
Sbjct: 58 SVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKK 117
Query: 479 TDQEIRTAIE--LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILL 536
EI +E L AA + D++ L A LSGGQ+QR+ IARA+ P++LL
Sbjct: 118 KLDEI---VEKSLKGAALW-DEVKDRLKKSA----LGLSGGQQQRLCIARALAVEPEVLL 169
Query: 537 LDEATSALDAESERIVQDALVKIMTSRTTVVVAHRL-TTIRNADLIAVVHQGKIVEKGTH 595
+DE TSALD S +++ + ++ T V+V H + R +D A G+IVE G
Sbjct: 170 MDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDT 229
Query: 596 DELIKDP 602
+L +P
Sbjct: 230 VDLFTNP 236
|
Length = 250 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 7e-30
Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 53/226 (23%)
Query: 1041 ELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVL 1100
E+ +S Y R + +L LSI +G+ V ++G +G+GKST++ + P SG +L
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 1101 LDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASN-AH 1159
LD +L L +++ V Q + ++ A
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ-------------------------ALELLGLAHLAD 92
Query: 1160 NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAES----- 1214
+ +LSGG++QR+ +ARA+ + P ILLLDE TS LD
Sbjct: 93 RPFN---------------ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL 137
Query: 1215 ERVVQDALERVMVNRTTVVVAHRLT-TIKNADIIAVVKNGVIAEQG 1259
E + + A ER +T V+V H L + AD + ++K+G I QG
Sbjct: 138 ELLRRLARER---GKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 7e-30
Identities = 75/219 (34%), Positives = 124/219 (56%), Gaps = 20/219 (9%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDI--KKLQLKWIREKIG 454
++ + G L+G +GSGKST+I + P +G+++IDG+DI KK++L IR+K+G
Sbjct: 27 NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVG 86
Query: 455 LVSQEP--ILFATSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEH 510
LV Q P LF ++ ++IA+G N +++EI ++ A +D + +
Sbjct: 87 LVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY-----EDYKDKS 141
Query: 511 GTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR-----TT 565
+LSGGQK+R+AIA + PKIL+LDE T+ LD + + L KI T
Sbjct: 142 PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR---DEILNKIKELHKEYNMTI 198
Query: 566 VVVAHRLTTI-RNADLIAVVHQGKIVEKGTHDELIKDPE 603
++V+H + + + AD I V+++GK +GT E+ K+ E
Sbjct: 199 ILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVE 237
|
Length = 287 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 1e-29
Identities = 69/212 (32%), Positives = 113/212 (53%), Gaps = 18/212 (8%)
Query: 393 FAGFSLHVP---SGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDI----KKLQ 445
F+L + + + G SG+GKST++ + PD G ++++G + KK+
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 446 LKWIREKIGLVSQEPILFA-TSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLD 504
L + KIGLV Q+ LF ++REN+A+G + ++E R +++ + +D L GLD
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVD-----ELLDLL--GLD 122
Query: 505 TMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS-- 562
+ + QLSGG+KQR+A+ARA+ P++LLLDE SALD + L +I +
Sbjct: 123 HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN 182
Query: 563 RTTVVVAHRLTTI-RNADLIAVVHQGKIVEKG 593
+ V H L+ AD I V+ G++ G
Sbjct: 183 IPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 79/247 (31%), Positives = 125/247 (50%), Gaps = 21/247 (8%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD----- 428
E+E + YF + I +L +P + AL+G SG GKST I + R D
Sbjct: 5 EVENLNTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGF 59
Query: 429 PDAGEVLIDGIDI--KKLQLKWIREKIGLVSQEPILFATSLRENIAYG----KENATDQE 482
G + +DG+DI + + +R+K+G+V Q+P F S+ +N+AYG E+ D
Sbjct: 60 RHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFI 119
Query: 483 IRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATS 542
E AA D++ LD A LSGGQ+QR+ IAR I +P+++L+DE S
Sbjct: 120 EERVEESLKAAALWDEVKDKLDKSA----LGLSGGQQQRLCIARTIAVSPEVILMDEPCS 175
Query: 543 ALDAESERIVQDALVKIMTSRTTVVVAHRL-TTIRNADLIAVVHQGKIVEKGTHDELIKD 601
ALD S ++D + K+ T V+V H + R + + G+I+E G D++ +
Sbjct: 176 ALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN 235
Query: 602 PEGPYTQ 608
P+ T+
Sbjct: 236 PKDKRTE 242
|
Length = 250 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 73/227 (32%), Positives = 119/227 (52%), Gaps = 9/227 (3%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD--PD---AGEVLIDGIDI--KK 443
QI +L + A +G SG GKST + R D P+ GE+ IDGID+
Sbjct: 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD 78
Query: 444 LQLKWIREKIGLVSQEPILFATSLRENIAYG-KENATDQEIRTAIELANAAKFIDKLPKG 502
+ +R K+G+V Q+P F S+ +N+AYG K + + + E+ + L +
Sbjct: 79 TNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE 138
Query: 503 LDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS 562
L + +LSGGQ+QR+ IARAI P +LL+DE SALD + ++++ + ++ +
Sbjct: 139 LGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKN 198
Query: 563 RTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
T +VV H + + +D +A G+IVE T E+ K+P+ T+
Sbjct: 199 FTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSSKTK 245
|
Length = 251 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 16/196 (8%)
Query: 376 ELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVL 435
+ ++ F Y E I SL + +G AL G++G+GK+T+ ++ +G +L
Sbjct: 1 RIENISFSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 436 IDGIDIKKLQLKWIREKIGLVSQEP--ILFATSLRENIAYGKENATDQEIRTAIELANAA 493
++G IK + R+ IG V Q+ LF S+RE + G + A
Sbjct: 59 LNGKPIKAKER---RKSIGYVMQDVDYQLFTDSVREELLLGLKELDA-------GNEQAE 108
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
+ L L + H LSGGQKQR+AIA A+L +L+ DE TS LD ++ V
Sbjct: 109 TVLKDL--DLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG 166
Query: 554 DALVKIMTSRTTVVVA 569
+ + ++ V+V
Sbjct: 167 ELIRELAAQGKAVIVI 182
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-29
Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 23/205 (11%)
Query: 408 LVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFA-TS 466
L+G SG GK+T++ L+ F PD+G +++DG D+ + I +V Q LF +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMT 58
Query: 467 LRENIAYG-KENATDQE-----IRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQ 520
+ EN+A+G K + + A+ L L+ A QLSGGQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQ-----------LEEFADRKPHQLSGGQQQ 107
Query: 521 RIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR--TTVVVAH-RLTTIRN 577
R+A+ARA++ PKILLLDE SALD + +Q L I T V V H + +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 578 ADLIAVVHQGKIVEKGTHDELIKDP 602
+D IA++ +GKI + GT +E+ ++P
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEIYEEP 192
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-29
Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 13/129 (10%)
Query: 417 STVISLVERFYDPDAGEVLIDGIDIKKL-QLKWIREKIGLVSQEPILFAT-SLRENIAYG 474
ST++ L+ P +G +L+DG D L K +R++IG+V Q+P LF ++REN+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 475 -KENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPK 533
++ D A+E F+D+ P LSGGQKQR+AIARA+LK PK
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREP----------VGTLSGGQKQRVAIARALLKKPK 110
Query: 534 ILLLDEATS 542
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 4e-29
Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 27/237 (11%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE++++ F+Y E S HV G +++G +GSGKST + L++ + ++G++
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEP---ILFATSLRENIAYGKENA--TDQEIRT---- 485
+IDG + + + IR KIG+V Q P + AT + +++A+G EN +E++
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGAT-VEDDVAFGLENKGIPHEEMKERVNE 123
Query: 486 AIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALD 545
A+EL F ++ P +LSGGQKQR+AIA A+ PKI++LDEATS LD
Sbjct: 124 ALELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLD 172
Query: 546 AESE----RIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDEL 598
E + ++ ++ T + + H L + +D + V+ G++ T EL
Sbjct: 173 PEGRLELIKTIKG--IRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 4e-29
Identities = 63/228 (27%), Positives = 119/228 (52%), Gaps = 26/228 (11%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
++L ++ RY + + G SL + G L+G +G+GK+T++ ++ P +G +
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPGMYG-LLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFAT-SLRENIAY-----GKENAT-DQEIRTAI 487
IDG D+ K Q + +R +IG + QE ++ ++RE + Y G + + +
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
EL N K LSGG ++R+ IA+A++ +P IL++DE T+ LD E
Sbjct: 116 ELVNLGDRAKKKIG-----------SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
Query: 548 SERI-VQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKG 593
ERI ++ L ++ R ++ H + + + + +AV+++GK+V +G
Sbjct: 165 -ERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 4e-29
Identities = 85/266 (31%), Positives = 141/266 (53%), Gaps = 36/266 (13%)
Query: 369 EKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD 428
+ E +E+ D++ RY E ++ G SL +G +++G SGSGKST + +
Sbjct: 1 DAAENALEVEDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK 57
Query: 429 PDAGEVLIDGIDIK-------------KLQLKWIREKIGLVSQEPILFA-TSLRENIAYG 474
P AG + ++G +I+ K QL+ +R ++G+V Q L++ ++ EN+
Sbjct: 58 PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA 117
Query: 475 KENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKI 534
+ AIE A K++ K+ G+ A + LSGGQ+QR+AIARA+ P++
Sbjct: 118 PVHVLGVSKAEAIE--RAEKYLAKV--GIAEKADAYPAHLSGGQQQRVAIARALAMEPEV 173
Query: 535 LLLDEATSALDAESERIVQDALVKIMTS-----RTTVVVAHRLTTIRN-ADLIAVVHQGK 588
+L DE TSALD E +V + L K+M RT VVV H + R+ + + +HQGK
Sbjct: 174 MLFDEPTSALDPE---LVGEVL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGK 229
Query: 589 IVEKGTHDELIKDPEGPYTQLVRLQE 614
I E+G +++ +P+ P RL++
Sbjct: 230 IEEEGPPEQVFGNPQSP-----RLKQ 250
|
Length = 256 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 115 bits (288), Expect = 8e-29
Identities = 69/208 (33%), Positives = 114/208 (54%), Gaps = 9/208 (4%)
Query: 1053 PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI--ELPKFK 1110
+ N+ + IP+G+ +VG+ G GKS+++ I G V N P F+
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 1111 LSWLRQQ--MGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHG 1168
+ R + + +Q+P L N T+ NI +G ++ A T+A + I LP G
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGSP--FNKQRYKAVTDACSLQPDIDLLPFG 129
Query: 1169 YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAE-SERVVQDALERVMV 1227
+T +GERG+ LSGGQ+QRI +ARA+ +N I+ LD+ SALD S+ ++Q+ + + +
Sbjct: 130 DQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ 189
Query: 1228 N--RTTVVVAHRLTTIKNADIIAVVKNG 1253
+ RT V+V H+L + +AD I +K+G
Sbjct: 190 DDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 9e-29
Identities = 118/436 (27%), Positives = 195/436 (44%), Gaps = 49/436 (11%)
Query: 862 LAFVILAVSPL---MLVQGYT-QTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCS 917
+A ++L V PL M ++ T Q MK KLM N+ + I+ + +
Sbjct: 464 VAVMVLMV-PLNAVMAMKTKTYQVAHMKSKDNRIKLM--------NEILNGIKVLKLYAW 514
Query: 918 EEKVMDLYEKKCEGPLKNGVRRGILSGAG-FGF---SFLVLYCTNAFCFYIGSVLVEHGK 973
E +D E + LK + L G F + FLV T A + + +
Sbjct: 515 ELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAE 574
Query: 974 ATFGQV--FKVF-FALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEG 1030
F + F + F L I + +S +A S + I S +++ E
Sbjct: 575 KAFVSLALFNILRFPLNILPMVIS-------SIVQASVSLKRL-RIFLSHEELEPDSIER 626
Query: 1031 MTLSSVGG-AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIE 1089
T+ G +I + +F + R + SIP G VA+VG+ G GKS++++ +
Sbjct: 627 RTIKPGEGNSITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALL 685
Query: 1090 RFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEI 1149
D GHV + + + V Q+ + N+++R NI +GK E+
Sbjct: 686 AEMDKVEGHVHM-------------KGSVAYVPQQAWIQNDSLRENILFGKA--LNEKYY 730
Query: 1150 IAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSA 1209
EA + LP G T +GE+GV LSGGQKQR+++ARAV N I L D+ SA
Sbjct: 731 QQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSA 790
Query: 1210 LDAESERVVQDAL---ERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMK 1266
+DA + + + + E V+ N+T ++V H ++ + D+I V+ G I+E GS+ L++
Sbjct: 791 VDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ 850
Query: 1267 ITDGAYASLVALHVSS 1282
DGA+A + +
Sbjct: 851 -RDGAFAEFLRTYAPD 865
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-28
Identities = 70/242 (28%), Positives = 128/242 (52%), Gaps = 28/242 (11%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+E+ ++ YP Q +L++ G A++G SG+GKST++ + R +P +G +
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 435 LIDGIDIKKLQ---LKWIREKIGLVSQEPILFA-TSLRENIAYGKENA-----------T 479
L++G DI KL+ L+ +R +IG++ Q L ++ EN+ +G+ +
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 480 DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDE 539
+++ A+ ++++ GL A + QLSGGQ+QR+AIARA+ + P ++L DE
Sbjct: 120 EEDKERALSA------LERV--GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADE 171
Query: 540 ATSALDAESERIVQDALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHD 596
++LD ++ + V D L +I T ++ H++ + AD I + G+IV G
Sbjct: 172 PIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231
Query: 597 EL 598
EL
Sbjct: 232 EL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 1e-28
Identities = 76/237 (32%), Positives = 123/237 (51%), Gaps = 24/237 (10%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+ELR + + + ++ + L + +G L+G SG GK+TV+ L+ F PD+G +
Sbjct: 15 VELRGISKSFDGK---EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIAYG--KENATDQEIRTAIELAN 491
++DG DI + + + V Q LF ++ EN+A+G + EI +
Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVM--E 127
Query: 492 AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI 551
A + + L+ A QLSGGQ+QR+AIARA++ PK+LLLDE+ SALD + +
Sbjct: 128 ALRMVQ-----LEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQ 182
Query: 552 VQDALVKIM--TSRTTVVVAH----RLTTIRNADLIAVVHQGKIVEKGTHDELIKDP 602
+Q+ L + T V V H LT +D I V+ G+I + GT E+ ++P
Sbjct: 183 MQNELKALQRKLGITFVFVTHDQEEALTM---SDRIVVMRDGRIEQDGTPREIYEEP 236
|
Length = 375 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-28
Identities = 71/214 (33%), Positives = 106/214 (49%), Gaps = 24/214 (11%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE +V YP V SLH+ G L G SG+GK+T++ L+ P G+V
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 435 LIDGIDIKKL---QLKWIREKIGLVSQE-PILFATSLRENIA------YGKENATDQEIR 484
I G D+ +L QL +R +IG+V Q+ +L ++ EN+A KE + +
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 485 TAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
A+ D P+ QLSGG++QR+AIARAI+ +P +LL DE T L
Sbjct: 120 AALRQVGLEHKADAFPE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 545 DAESERIVQDALVKIMTSRTTVVVA-HRLTTIRN 577
D + + D L ++ TTV+VA H L+ +
Sbjct: 169 DPDLSERILDLLKRLNKRGTTVIVATHDLSLVDR 202
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 3e-28
Identities = 83/258 (32%), Positives = 136/258 (52%), Gaps = 22/258 (8%)
Query: 367 TLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERF 426
LE I +++ YF + ++ E + +L VP G+ A+VG +G GK+++IS +
Sbjct: 607 PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAM--- 663
Query: 427 YDPDAGEV--LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIR 484
GE+ D + IR + V Q +F ++R+NI +G ++ R
Sbjct: 664 ----LGELPPRSDASVV-------IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYER 712
Query: 485 TAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
AI++ +D LP G T GE G +SGGQKQR+++ARA+ N + + D+ SAL
Sbjct: 713 -AIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771
Query: 545 DAESERIVQDALVK-IMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPE 603
DA R V D +K + +T V+V ++L + D I +VH+G I E+GT++EL +
Sbjct: 772 DAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN-- 829
Query: 604 GPYTQLVRLQEGSKEAED 621
GP Q +L E + + E+
Sbjct: 830 GPLFQ--KLMENAGKMEE 845
|
Length = 1622 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 3e-28
Identities = 130/547 (23%), Positives = 231/547 (42%), Gaps = 62/547 (11%)
Query: 350 ETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALV 409
++I+R+ I P + + IT+ + F + AR G + +P G A+V
Sbjct: 622 DSIERRT-IKPGEGNSITV---------HNATFTW-ARDLPPTLNGITFSIPEGALVAVV 670
Query: 410 GQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRE 469
GQ G GKS+++S + D G V + G + V Q+ + SLRE
Sbjct: 671 GQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRE 717
Query: 470 NIAYGK---ENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526
NI +GK E Q + L + ++ LP G T GE G LSGGQKQR+++AR
Sbjct: 718 NILFGKALNEKYYQQVLEACALLPD----LEILPSGDRTEIGEKGVNLSGGQKQRVSLAR 773
Query: 527 AILKNPKILLLDEATSALDAESERIVQDALV---KIMTSRTTVVVAHRLTTIRNADLIAV 583
A+ N I L D+ SA+DA + + + ++ ++ ++T ++V H ++ + D+I V
Sbjct: 774 AVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIV 833
Query: 584 VHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTR 643
+ GKI E G++ EL+ +G + + +R E + L L S K +
Sbjct: 834 MSGGKISEMGSYQELL-QRDGAFAEFLR-TYAPDEQQGHLEDSWTALVSGEGKEAKLIEN 891
Query: 644 SGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQGGAERTPLMIEKRQKLS 703
+ + + + R S S G G + E + A+ E+ KL
Sbjct: 892 GMLVTDVVGKQLQRQLSASSSDSGDQSRHHGS-----SAELQKAEAK------EETWKLM 940
Query: 704 MRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLL------LSSSIRMFFEPEDKL---- 753
A + E V A G+ IF + L+S+ + +D +
Sbjct: 941 EADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGT 1000
Query: 754 RKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPA 813
+ ++ +Y LGI+ AV + + G + R + + +S+F+
Sbjct: 1001 QNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE--R 1058
Query: 814 NSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLM 873
SG++ R S + T+ S++ + + + ++ + LI+ A I A +I PL
Sbjct: 1059 TPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIP---PLG 1115
Query: 874 LVQGYTQ 880
L+ + Q
Sbjct: 1116 LLYFFVQ 1122
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 4e-28
Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 13/227 (5%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA---GEVLIDGIDIKKLQLK 447
Q ++ + AL+G SG GKST + R D A G V I+G D+K +
Sbjct: 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75
Query: 448 WIREKIGLVSQEPILFATSLRENIAY-----GKENATDQEIRTAIELANAAKFIDKLPKG 502
+R+ +G+V Q+P +F S+ ENI+Y G D+E ++ +++
Sbjct: 76 ALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK 135
Query: 503 LDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS 562
L ++ LSGGQ+QR+ IARA+ PK+LLLDE TSALD S ++++ L ++ +
Sbjct: 136 LK----QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHN 191
Query: 563 RTTVVVAHRLTT-IRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
+ ++V H + R AD A H G+++E G E ++P+ T+
Sbjct: 192 LSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEKTK 238
|
Length = 246 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 4e-28
Identities = 77/205 (37%), Positives = 113/205 (55%), Gaps = 25/205 (12%)
Query: 396 FSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGL 455
F L+V G A++G SG+GKST+++L+ F +P +G + ++ L + + +
Sbjct: 17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSM 74
Query: 456 VSQEPILFA-TSLRENIAYG-----KENATDQE-IRTAIELANAAKFIDKLPKGLDTMAG 508
+ QE LFA ++R+NI G K NA QE + A + A ++D+LP+
Sbjct: 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE------- 127
Query: 509 EHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS---RTT 565
QLSGGQ+QR+A+AR +++ ILLLDE SALD R ALVK + S RT
Sbjct: 128 ----QLSGGQRQRVALARCLVRPNPILLLDEPFSALD-PLLREEMLALVKQLCSERQRTL 182
Query: 566 VVVAHRLT-TIRNADLIAVVHQGKI 589
++V H L+ A IAVV QGKI
Sbjct: 183 LMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 5e-28
Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 27/226 (11%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IE V+ YP + +SI +G+ V LVG SG+GKST++ LI + P SG +
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 1100 LLDNIE---LPKFKLSWLRQQMGLVSQE-PVLFNETIRTNIAY-----GKQGGATEEEII 1150
++ + L + +LR+++G+V Q+ +L + + N+A+ G + +
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 1151 AATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL 1210
AA E + ALP +LSGG++QR+AIARA++ +P IL+ DE T L
Sbjct: 119 AALELVGLSHKHRALPA-----------ELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
Query: 1211 DAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIA 1256
D ++ + + L+++ TTVVVA +++ ++ VIA
Sbjct: 168 DPDTTWEIMNLLKKINKAGTTVVVA-----THAKELVDTTRHRVIA 208
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 5e-28
Identities = 54/190 (28%), Positives = 99/190 (52%), Gaps = 22/190 (11%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ----L 446
I +L + G A++G+SGSGKST+++++ D+G+V ++G + L
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 447 KWIREKIGLVSQEPILFAT-SLRENI----AYGKENATD--QEIRTAIELANAAKFIDKL 499
K+ REK+G + Q L ++ EN+ Y K + + ++ + A+E + +
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQK 131
Query: 500 PKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKI 559
+LSGG++QR+A+ARAILK P ++L DE T +LD ++ V D L+++
Sbjct: 132 I-----------YELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLEL 180
Query: 560 MTSRTTVVVA 569
T+++
Sbjct: 181 NDEGKTIIIV 190
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 6e-28
Identities = 65/215 (30%), Positives = 111/215 (51%), Gaps = 24/215 (11%)
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ-- 1116
+ L + G+ ++G SGSGKST++ L+ R +P G +L+D ++ K + LR+
Sbjct: 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELR 104
Query: 1117 --QMGLVSQEPVLF-NETIRTNIAYG-KQGGATEEE----IIAATEASNAHNFISALPHG 1168
++ +V Q L + T+ N+A+G + G + E + A E + P+
Sbjct: 105 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN- 163
Query: 1169 YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--M 1226
+LSGG +QR+ +ARA+ +P ILL+DEA SALD +QD L +
Sbjct: 164 ----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK 213
Query: 1227 VNRTTVVVAHRLT-TIKNADIIAVVKNGVIAEQGS 1260
+ +T V + H L ++ D IA++K+G I + G+
Sbjct: 214 LKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGT 248
|
Length = 386 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 7e-28
Identities = 80/283 (28%), Positives = 133/283 (46%), Gaps = 25/283 (8%)
Query: 997 SAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFK-YPTRPDV 1055
S + DT S+AS + + +S A + + + P V
Sbjct: 620 SVVVEDTDYGSPSSASRHIVEGGTGGGHEATP-----TSERSAKTPKMKTDDFFELEPKV 674
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLR 1115
+ R++ +S+P GK ++G +GSGKST++ + ++ G V W
Sbjct: 675 -LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-------------WAE 720
Query: 1116 QQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGE 1175
+ + V Q+ + N T+R NI + + A + A S ++ L G ET +GE
Sbjct: 721 RSIAYVPQQAWIMNATVRGNILFFDEEDA--ARLADAVRVSQLEADLAQLGGGLETEIGE 778
Query: 1176 RGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAE-SERVVQDALERVMVNRTTVVV 1234
+GV LSGGQK R+++ARAV N + LLD+ SALDA ERVV++ + +T V+
Sbjct: 779 KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLA 838
Query: 1235 AHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVA 1277
H++ + AD + + +G + GS M+ + YA+L A
Sbjct: 839 THQVHVVPRADYVVALGDGRVEFSGSSADFMRTS--LYATLAA 879
|
Length = 1560 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 79/235 (33%), Positives = 121/235 (51%), Gaps = 21/235 (8%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
+IE+R VS ++ D ++ L IPSG+ VAL+G SGSGK+T++ LI PDSG
Sbjct: 2 SIEVRNVSKRFG---DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAYGKQGGATEEEIIAATEASN 1157
+L + + + +G V Q LF T+ N+A+G + E A +
Sbjct: 59 ILFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK 116
Query: 1158 AHNF-----ISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
H + L Y QLSGGQ+QR+A+ARA+ PK+LLLDE ALDA
Sbjct: 117 VHELLKLVQLDWLADRYPA-------QLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 169
Query: 1213 ESERVVQDALERVM--VNRTTVVVAH-RLTTIKNADIIAVVKNGVIAEQGSHDAL 1264
+ + ++ L R+ ++ TTV V H + ++ AD + V+ G I + G+ D +
Sbjct: 170 KVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-27
Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 27/233 (11%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+E+ +S YP Q +N+ L+I G+ VA++G SG+GKST++ I R +P SG +
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1100 LLDNIELPKF---KLSWLRQQMGLVSQEPVLF-NETIRTNIAYGKQGGA----------T 1145
LL+ ++ K KL LR+++G++ Q L T+ N+ +G+ G +
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 1146 EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDE 1205
EE+ A A ++ + +R QLSGGQ+QR+AIARA+ + P ++L DE
Sbjct: 120 EEDKERALSALERVG-LADKAY-------QRADQLSGGQQQRVAIARALAQQPDLILADE 171
Query: 1206 ATSALDAESERVVQDALERVMVNR--TTVVVAHRLTTIKN-ADIIAVVKNGVI 1255
++LD ++ + V D L+R+ T ++ H++ K AD I +K G I
Sbjct: 172 PIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 1e-27
Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 30/262 (11%)
Query: 356 PKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSG 415
P DP +SG T+ IE RD+ Y + Q S+ +P A++G SG G
Sbjct: 27 PSGDPAASSGETV------IEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCG 77
Query: 416 KSTVISLVERFYDP-DA----GEVLIDGIDIKKLQLK--WIREKIGLVSQEPILFATSLR 468
KST + + R D DA GE+ G ++ + +R +IG+V Q+P F S+
Sbjct: 78 KSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIY 137
Query: 469 ENIAYG-----KENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIA 523
+N+AYG + D+ + ++ A D++ LD G LSGGQ+QR+
Sbjct: 138 DNVAYGLKIQGYDGDIDERVEESLR---RAALWDEVKDQLD----SSGLDLSGGQQQRLC 190
Query: 524 IARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRL-TTIRNADLIA 582
IARAI +P+++L+DE SALD + ++D + ++ T V+V H + R +D A
Sbjct: 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTA 250
Query: 583 V-VHQGKIVEKGTHDELIKDPE 603
V + G++VE D++ ++PE
Sbjct: 251 VFLTGGELVEFDDTDKIFENPE 272
|
Length = 285 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 83/253 (32%), Positives = 129/253 (50%), Gaps = 32/253 (12%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA--- 431
+ RDV Y E Q L +P T A +G SG GKST + + R D
Sbjct: 20 MRARDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR 76
Query: 432 --GEVLIDGIDI--KKLQLKWIREKIGLVSQEPILFATSLRENIAYG-------KENAT- 479
G++ +DG DI +L + +R ++G+V Q+P F S+ EN+AYG + A
Sbjct: 77 VTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAEL 136
Query: 480 DQEIRTAIELA---NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILL 536
D+ + T++ A K D+L E GT LSGGQ+QR+ IARAI +P+++L
Sbjct: 137 DEIVETSLRKAGLWEEVK--DRL--------HEPGTGLSGGQQQRLCIARAIAVSPEVIL 186
Query: 537 LDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTH 595
+DE SALD + V++ + ++ + T V+V H + R + A H G +VE G
Sbjct: 187 MDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246
Query: 596 DELIKDPEGPYTQ 608
+++ +P+ P TQ
Sbjct: 247 EKMFTNPDDPRTQ 259
|
Length = 267 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-27
Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 39/248 (15%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD-----SGHV 1099
VSF V+ + + G+ + +VGESGSGKS + I G +
Sbjct: 9 VSFPTDAGV-VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI 67
Query: 1100 LLDNIELPKFKLSWLRQ----QMGLVSQEPVL-FN----------ETIRTNIAYGKQGGA 1144
L D +L LR+ ++ ++ Q+P+ N E +R + + A
Sbjct: 68 LFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEA 127
Query: 1145 TEEEIIAATEA---SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKIL 1201
+E I E + + + PH +LSGG +QR+ IA A+ NPK+L
Sbjct: 128 -KERAIELLELVGIPDPERRLKSYPH-----------ELSGGMRQRVMIAMALALNPKLL 175
Query: 1202 LLDEATSALDAESERVVQDALERVMVNRTT--VVVAHRLTTIKN-ADIIAVVKNGVIAEQ 1258
+ DE T+ALD + + D L+ + + T +++ H L + AD +AV+ G I E+
Sbjct: 176 IADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEE 235
Query: 1259 GSHDALMK 1266
G + + K
Sbjct: 236 GPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 16/220 (7%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL-K 447
+ QI G SL VP G AL+G++G+GK+T++ + P +G + DG DI L +
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE 71
Query: 448 WIREKIGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTM 506
R IG V + +F ++ EN+ G + + +E + + P+ L
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLE-----RVYELFPR-LKER 125
Query: 507 AGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ---DALVKIMTSR 563
+ LSGG++Q +AIARA++ PK+LLLDE + L + +IV+ +A+ ++
Sbjct: 126 RKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIRELRDEG 182
Query: 564 TTVV-VAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601
T++ V AD V+ +G++V +GT EL+ D
Sbjct: 183 VTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 69/228 (30%), Positives = 115/228 (50%), Gaps = 26/228 (11%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+ L + F Y +P F L G A+VG SGSGKST+++L+ F P +G V
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIAYG-----KENATDQEIRTAIE 488
LI+G+D+ + ++ QE LFA ++ +N+ G K A D++ AIE
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQ---AIE 110
Query: 489 LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
+A A + L K L +LSGG++QR+A+AR ++++ +LLLDE +ALD
Sbjct: 111 VALARVGLAGLEKRL-------PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
Query: 549 ERIVQDALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKG 593
+ D ++ + T ++V H+ + A + + G+I +G
Sbjct: 164 RAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-27
Identities = 74/241 (30%), Positives = 120/241 (49%), Gaps = 25/241 (10%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+E RD+ + YP E G + G AL+G +G+GKST+ P +GEV
Sbjct: 2 LETRDLKYSYPDGTEA--LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 435 LIDG--IDIKKLQLKWIREKIGLVSQEP--ILFATSLRENIAYG------KENATDQEIR 484
LI G I K L +R+ +G+V Q P LFA ++ E++A+G + ++ ++
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVK 119
Query: 485 TAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
A++ F +K P LSGGQK+R+AIA + P+I++LDE TS L
Sbjct: 120 EALKAVGMEGFENKPPH-----------HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGL 168
Query: 545 DAESERIVQDALVKIMTSRTTVVVA-HRLTTI-RNADLIAVVHQGKIVEKGTHDELIKDP 602
D + L + T++++ H + + AD + V+ GKI+++GT E+ D
Sbjct: 169 DPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228
Query: 603 E 603
E
Sbjct: 229 E 229
|
Length = 275 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 77/216 (35%), Positives = 116/216 (53%), Gaps = 14/216 (6%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW 1113
Q ++ L +P+G VAL+G SGSGKST++ +I PDSG + L+ + +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR- 70
Query: 1114 LRQQMGLVSQEPVLFNE-TIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETN 1172
+++G V Q LF T+R NIA+G EI +A L
Sbjct: 71 -DRKIGFVFQHYALFKHLTVRDNIAFGL-------EIRKHPKAKIKARVEELLELVQLEG 122
Query: 1173 VGER-GVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNR 1229
+G+R QLSGGQ+QR+A+ARA+ P++LLLDE ALDA+ + ++ L ++ V+
Sbjct: 123 LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182
Query: 1230 TTVVVAH-RLTTIKNADIIAVVKNGVIAEQGSHDAL 1264
TTV V H + ++ AD I V+ NG I + GS D +
Sbjct: 183 TTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 3e-27
Identities = 79/252 (31%), Positives = 126/252 (50%), Gaps = 35/252 (13%)
Query: 1020 KPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGS 1079
K++ L +ELR +S + + ++ NL L+I +G+ + L+G SG
Sbjct: 1 SKKLNKQPSSLSPL------VELRGISKSFDGK---EVISNLDLTINNGEFLTLLGPSGC 51
Query: 1080 GKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAY 1138
GK+TV+ LI F PDSG ++LD ++ + + + V Q LF + T+ N+A+
Sbjct: 52 GKTTVLRLIAGFETPDSGRIMLDGQDIT--HVPAENRHVNTVFQSYALFPHMTVFENVAF 109
Query: 1139 G-KQGGATEEEIIAATEASNA------HNFISALPHGYETNVGERGVQLSGGQKQRIAIA 1191
G + EI A F PH QLSGGQ+QR+AIA
Sbjct: 110 GLRMQKTPAAEI--TPRVMEALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIA 156
Query: 1192 RAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAH-RLTTIKNADIIA 1248
RAV+ PK+LLLDE+ SALD + + +Q+ L+ + + T V V H + + +D I
Sbjct: 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIV 216
Query: 1249 VVKNGVIAEQGS 1260
V+++G I + G+
Sbjct: 217 VMRDGRIEQDGT 228
|
Length = 375 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 3e-27
Identities = 110/514 (21%), Positives = 207/514 (40%), Gaps = 67/514 (13%)
Query: 383 RYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIK 442
+ P+V + S+ VP G ++G +GSGKST++ + ++ G V
Sbjct: 667 FFELEPKV-LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-------- 717
Query: 443 KLQLKWIREKIGLVSQEPILFATSLRENIAY-GKENATDQEIRTAIELANAAKFIDKLPK 501
W I V Q+ + ++R NI + +E+A + A+ ++ + +L
Sbjct: 718 -----WAERSIAYVPQQAWIMNATVRGNILFFDEEDAAR--LADAVRVSQLEADLAQLGG 770
Query: 502 GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE-SERIVQDALVKIM 560
GL+T GE G LSGGQK R+++ARA+ N + LLD+ SALDA ER+V++ + +
Sbjct: 771 GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL 830
Query: 561 TSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAE 620
+T V+ H++ + AD + + G++ G+ + ++ L KE +
Sbjct: 831 AGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTS-----LYATLAAELKENK 885
Query: 621 DALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFE 680
D+ DAD + D V E
Sbjct: 886 DSKEGDADAEVAEVDAAPGGAVDHEP------------------------PVAKQEGNAE 921
Query: 681 TEEGDQGGAERTPLMIEKRQKLSM----RRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFG 736
+G A LM + + +AYL G AAG F +
Sbjct: 922 GGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLR------FCGGLHAAGFVLATFAVTE 975
Query: 737 LL-LSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRS 795
L+ +SS + + + + + +YL + ++ +VP + + A + R +
Sbjct: 976 LVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHR 1035
Query: 796 LTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIA 855
V +S+FD G + R S D + + + S ++Q + +I + +++
Sbjct: 1036 DLLRSVSRGTMSFFD--TTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVT 1093
Query: 856 FTANWILAFVILAVSPLMLVQGYTQTKFMKGFSA 889
+ FV++A+ P GY + M+ +++
Sbjct: 1094 SASQ---PFVLVALVPC----GYLYYRLMQFYNS 1120
|
Length = 1560 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 3e-27
Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 23/196 (11%)
Query: 384 YPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDG--IDI 441
YP PEV G + G AL+G +G+GKST++ + P +G VLIDG +D
Sbjct: 1 YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 442 KKLQLKWIREKIGLVSQEP--ILFATSLRENIAYG------KENATDQEIRTAIELANAA 493
+ L R+++GLV Q+P LFA + +++A+G E ++ +R A+ A+
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS 118
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
++ LSGG+K+R+AIA A+ P +LLLDE T+ LD +
Sbjct: 119 GLRERPTH-----------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML 167
Query: 554 DALVKIMTSRTTVVVA 569
L ++ TVV++
Sbjct: 168 AILRRLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 77/255 (30%), Positives = 125/255 (49%), Gaps = 32/255 (12%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+ DV R+ + + G + V +G AL+G SGSGKST++ ++ D G++
Sbjct: 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI 57
Query: 435 LIDGIDIKKLQ-------------LKWIREKIGLVSQEPILFA-TSLRENIAYG----KE 476
++G + + L+ +R KIG+V Q LF ++ +N+
Sbjct: 58 QVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLG 117
Query: 477 NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILL 536
A + + A+EL + DK D M QLSGGQ+QR+AIARA+ PK++L
Sbjct: 118 MARAEAEKRAMELLDMVGLADKA----DHMP----AQLSGGQQQRVAIARALAMRPKVML 169
Query: 537 LDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKG 593
DE TSALD E V + + ++ T ++V H + R AD + +G+IVE+G
Sbjct: 170 FDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQG 229
Query: 594 THDELIKDPEGPYTQ 608
DE+ + P+ T+
Sbjct: 230 KPDEIFRQPKEERTR 244
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 4e-27
Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 17/230 (7%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVI-ALIERFYDPDSG 1097
AI ++ F + ++ + N+ L +P G VA+VG +G GK+++I A++
Sbjct: 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDA 673
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASN 1157
V++ R + V Q +FN T+R NI +G E A + +
Sbjct: 674 SVVI-------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYE--RAIDVTA 718
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
+ + LP G T +GERGV +SGGQKQR+++ARAV N + + D+ SALDA R
Sbjct: 719 LQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQ 778
Query: 1218 VQDA-LERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMK 1266
V D ++ + +T V+V ++L + D I +V G+I E+G+++ L
Sbjct: 779 VFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828
|
Length = 1622 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 4e-27
Identities = 67/231 (29%), Positives = 116/231 (50%), Gaps = 21/231 (9%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
I++ VSF YP + +N+ I G+ VA++G +GSGKST+ ++ P SG
Sbjct: 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE 65
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEP--VLFNETIRTNIAYG---KQGGATE-EEIIA- 1151
+ +D I + K L +R+++G++ Q P T+ +IA+G K+ + ++II
Sbjct: 66 IKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDD 125
Query: 1152 ATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
+ +++ P LSGGQKQR+AIA + NP+I++ DE+TS LD
Sbjct: 126 LAKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
Query: 1212 AESERVVQDALE--RVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGS 1260
+ +R ++ + R +T + + H + AD + V G + QG
Sbjct: 175 PKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGK 225
|
Length = 271 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 4e-27
Identities = 81/222 (36%), Positives = 120/222 (54%), Gaps = 21/222 (9%)
Query: 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL--PKFKLSWLRQQ 1117
N+ + I G+ V L+G +GSGKST+I + P SG +++D +++ K KLS +R++
Sbjct: 25 NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKK 84
Query: 1118 MGLVSQEP--VLFNETIRTNIAYG-KQGGATEEEI-IAATEASNAHNFISALPHGYETNV 1173
+GLV Q P LF ETI +IA+G G +EEEI A N I L YE
Sbjct: 85 VGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMN----IVGLD--YEDYK 138
Query: 1174 GERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-----VN 1228
+ +LSGGQK+R+AIA V PKIL+LDE T+ LD + + L ++ N
Sbjct: 139 DKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR---DEILNKIKELHKEYN 195
Query: 1229 RTTVVVAHRLTTI-KNADIIAVVKNGVIAEQGSHDALMKITD 1269
T ++V+H + + K AD I V+ G QG+ + K +
Sbjct: 196 MTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVE 237
|
Length = 287 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 4e-27
Identities = 76/247 (30%), Positives = 127/247 (51%), Gaps = 19/247 (7%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD--PDA 431
++E +++ Y E Q +L + AL+G SG GKST + + R D +
Sbjct: 4 KMESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNV 60
Query: 432 ---GEVLIDGIDI--KKLQLKWIREKIGLVSQEPILFATSLRENIAYGKE---NATDQEI 483
GEVL+DG +I K + + +R+++G+V Q+P F S+ +N+AYG +E+
Sbjct: 61 KIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKEL 120
Query: 484 RTAIELA-NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATS 542
+E A A D++ L A +LSGGQ+QR+ IAR I P ++L+DE TS
Sbjct: 121 DKIVEWALKKAALWDEVKDDLKKSA----LKLSGGQQQRLCIARTIAVKPDVILMDEPTS 176
Query: 543 ALDAESERIVQDALVKIMTSRTTVVVAHRLTTI-RNADLIAVVHQGKIVEKGTHDELIKD 601
ALD S ++D +V++ T V+V H + R +D A G ++E +++ +
Sbjct: 177 ALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLE 236
Query: 602 PEGPYTQ 608
P+ T+
Sbjct: 237 PQKKETE 243
|
Length = 251 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 4e-27
Identities = 66/257 (25%), Positives = 118/257 (45%), Gaps = 37/257 (14%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
IE+ ++ Y RP + SL V G AL+G +G+GKST++ + P +GE
Sbjct: 4 MIEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPIL---FATSLRENIA---------YGKENATD- 480
+ I G ++K + R +IG V Q+ + F ++++ + + + N D
Sbjct: 61 IKIFGKPVRKRRK---RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 481 QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEA 540
+++ A+E D+ +LSGGQKQR+ +ARA+ +NP +LLLDE
Sbjct: 118 EKVDEALERVGMEDLRDRQI-----------GELSGGQKQRVLLARALAQNPDLLLLDEP 166
Query: 541 TSALDAESERIVQDALVKI-MTSRTTVVVAHRL-TTIRNADLIA-----VVHQGKIVEKG 593
+ +D ++ + D L ++ +T ++V H L + D + ++ G E
Sbjct: 167 FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVL 226
Query: 594 THDELIKDPEGPYTQLV 610
T + L K G +
Sbjct: 227 TEENLEKAFGGSLAHAL 243
|
Length = 254 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 5e-27
Identities = 65/247 (26%), Positives = 104/247 (42%), Gaps = 40/247 (16%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKST----VIALIERFYDPDSGHVL 1100
V F V R++ + G+ + +VGESGSGKST ++ L+ SG V+
Sbjct: 13 VEFATDGGR-VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI 71
Query: 1101 LDNIEL------PKFKLSWLRQQMGLVSQEPV-LFNE--TIRTNI--AYGKQGGATEEEI 1149
LD +L KL +++ ++ Q+P+ N TI I A G + E
Sbjct: 72 LDGRDLLGLSEREMRKL--RGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEA 129
Query: 1150 IAATEA-------SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILL 1202
+ PH QLSGG +QR+ IA A+ PK+L+
Sbjct: 130 RKRAVELLEQVGLPDPER-RDRYPH-----------QLSGGMRQRVMIAMALALKPKLLI 177
Query: 1203 LDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259
DE T+ALD ++ + D L+ + + + H L + AD + V+ G I E G
Sbjct: 178 ADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETG 237
Query: 1260 SHDALMK 1266
+ ++
Sbjct: 238 PTEEILS 244
|
Length = 539 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 5e-27
Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 25/242 (10%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE- 433
+E + V F YP + S +P G+ AL+G +GSGKST+ L+ PD
Sbjct: 6 VEFKHVSFTYPDSKK-PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 434 --VLIDGIDIKKLQLKWIREKIGLVSQEP--ILFATSLRENIAYGKEN--ATDQE----I 483
+ +DGI + + IREK+G+V Q P ++ +++A+G EN E +
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 484 RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSA 543
R + +ID P LSGGQKQR+AIA + PKI++LDE+TS
Sbjct: 125 RDVLADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 544 LDAESERIVQDALVKIMTSR--TTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKD 601
LD + + + K+ T + + H + AD + V+ GK++ +G+ E+
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
Query: 602 PE 603
E
Sbjct: 234 VE 235
|
Length = 282 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 6e-27
Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 15/231 (6%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG-----EVLIDGIDI-K 442
E Q +L +P+ AL+G SG GKST++ + R D G ++ +DG DI
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74
Query: 443 KLQLKWIREKIGLVSQEPILFATSLRENIAYG--KENATDQEIRTAI--ELANAAKFIDK 498
+ + +R K+G+V Q+P F S+ EN+AYG + D+++ + A D+
Sbjct: 75 NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE 134
Query: 499 LPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVK 558
+ L + H LSGGQ+QR+ IAR I P ++L+DE TSALD + +++ + +
Sbjct: 135 VKDRLKS----HAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEE 190
Query: 559 IMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
+ + T V+V H + R +D A G++VE + +P+ TQ
Sbjct: 191 LKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNPKDDRTQ 241
|
Length = 249 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 7e-27
Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 23/229 (10%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE+ D++FRY + + G SL +P G+ AL+G +G+GKST++ + Y P G V
Sbjct: 5 IEVEDLHFRY--KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEP--ILFATSLRENIAYGKEN------ATDQEIRTA 486
+ G ++ KW+R K+GLV Q+P +F++++ +++A+G N ++ + A
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 487 IELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 546
++ F DK P LS GQK+R+AIA + +P +++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 547 ESERIVQDALVKIMTSRTTVVVA-HRLT-TIRNADLIAVVHQGKIVEKG 593
+ + + L ++ TV+VA H + AD + V+ +G+++ +G
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 9e-27
Identities = 64/239 (26%), Positives = 103/239 (43%), Gaps = 60/239 (25%)
Query: 1040 IELRCVSFKYPTR------PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD 1093
+E++ + +P V+ + SI G+T+ LVGESG GKST+ LI +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 1094 PDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAAT 1153
P SG +L + ++ K R+++ E++
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERV----------------------------LELLEKV 96
Query: 1154 EASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAE 1213
F+ PH +LSGGQ+QRI IARA+ NPK+++ DE SALD
Sbjct: 97 GLPE--EFLYRYPH-----------ELSGGQRQRIGIARALALNPKLIVADEPVSALDV- 142
Query: 1214 SERVVQD-------ALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264
VQ L+ + T + ++H L+ ++ +D IAV+ G I E G + +
Sbjct: 143 ---SVQAQILNLLKDLQEEL-GLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEV 197
|
Length = 268 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 1e-26
Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 25/221 (11%)
Query: 1030 GMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIE 1089
+++ I++R ++F Y +N+ L I + A +G SG GKST++
Sbjct: 4 MSMVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFN 60
Query: 1090 RFYD--PD---SGHVLLD--NIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG--- 1139
R Y+ P+ G +LLD NI PK ++ LR ++G+V Q+P F +I NIA+G
Sbjct: 61 RMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRL 120
Query: 1140 --KQGGATEEEII--AATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVL 1195
K A +E + A T+A AL + + + + G LSGGQ+QR+ IAR +
Sbjct: 121 FEKLSRAEMDERVEWALTKA--------ALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA 172
Query: 1196 KNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAH 1236
P++LLLDE SALD S +++ + + + T V+V H
Sbjct: 173 IRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 81/236 (34%), Positives = 124/236 (52%), Gaps = 23/236 (9%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IE + VS + Q+ N+ L+I G+ V ++G SGSGKST++ I + + SG +
Sbjct: 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 1100 LLDNIEL--PKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAYG--KQGGATEEEIIAATE 1154
++D +++ PK +RQ+ G+V Q+ LF T N+ +G + GA++EE
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAR 118
Query: 1155 ASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAES 1214
A ++ H Y + +LSGGQ+QR+AIARA+ PK++L DE TSALD E
Sbjct: 119 ELLAKVGLAERAHHYPS-------ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPEL 171
Query: 1215 E----RVVQDALERVMVNRTTVVVAHRLT-TIKNADIIAVVKNGVIAEQGSHDALM 1265
+V+QD E M T V+V H + K A + + G IAE G L+
Sbjct: 172 RHEVLKVMQDLAEEGM---TMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224
|
Length = 240 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-26
Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 12/129 (9%)
Query: 1082 STVIALIERFYDPDSGHVLLDNIELPKFKLSW-LRQQMGLVSQEPVLFNE-TIRTNIAYG 1139
ST++ LI P SG +LLD + LR+++G+V Q+P LF E T+R N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1140 KQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPK 1199
+ + A E +F+ E LSGGQKQR+AIARA+LK PK
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 1200 ILLLDEATS 1208
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 1e-26
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 22/205 (10%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IE VS YP V ++ L I G+ + L G SG+GK+T++ L+ P G V
Sbjct: 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 1100 LLDNIE---LPKFKLSWLRQQMGLVSQE-PVLFNETIRTNIAY-----GKQGGATEEEII 1150
+ + L +L LR+++G+V Q+ +L + T+ N+A GK+ + +
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 1151 AATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL 1210
AA L H + QLSGG++QR+AIARA++ +P +LL DE T L
Sbjct: 120 AALRQVG-------LEHKADAFPE----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 1211 DAESERVVQDALERVMVNRTTVVVA 1235
D + + D L+R+ TTV+VA
Sbjct: 169 DPDLSERILDLLKRLNKRGTTVIVA 193
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 19/223 (8%)
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL-KWIREKI 453
S V G L+G +G+GK+T+ +L+ F P +G VL DG DI L + R I
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77
Query: 454 GLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDK---------LPKGL 503
G Q P LF ++ EN+ + T + A + ++ L
Sbjct: 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLA 137
Query: 504 DTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL-DAESERIVQDALVKIMTS 562
D AGE LS GQ++R+ IARA+ +PK+LLLDE + L E+E + + + ++
Sbjct: 138 DRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA-ELIRELRER 192
Query: 563 -RTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPE 603
T ++V H + + + AD + V+ QG+++ +GT DE+ +P
Sbjct: 193 GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPR 235
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 18/202 (8%)
Query: 1067 SGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL----PKFKLSWLRQQMGLVS 1122
+ + + G SG+GKST++ I PD G ++L+ L K L ++++GLV
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 1123 QEPVLF-NETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGV-QL 1180
Q+ LF + +R N+A+G + E+ I+ E + ++ R QL
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL---------DHLLNRYPAQL 132
Query: 1181 SGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRL 1238
SGG+KQR+A+ARA+ P++LLLDE SALD + L+++ +N + V H L
Sbjct: 133 SGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL 192
Query: 1239 TTI-KNADIIAVVKNGVIAEQG 1259
+ AD I V+++G + G
Sbjct: 193 SEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-26
Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 28/200 (14%)
Query: 1073 LVGESGSGKSTVIALIERFYDPDSGHVLLDN---IELPKFKLSWLRQQMGLVSQEPVLF- 1128
L+G SG GK+T++ L+ F PDSG ++LD +P + + +V Q LF
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH-----LRHINMVFQSYALFP 55
Query: 1129 NETIRTNIAYG-KQGGATEEEI----IAATEASNAHNFISALPHGYETNVGERGVQLSGG 1183
+ T+ N+A+G K EI + A F PH QLSGG
Sbjct: 56 HMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPH-----------QLSGG 104
Query: 1184 QKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAH-RLTT 1240
Q+QR+A+ARA++ PKILLLDE SALD + +Q L+ + + T V V H +
Sbjct: 105 QQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEA 164
Query: 1241 IKNADIIAVVKNGVIAEQGS 1260
+ +D IA+++ G IA+ G+
Sbjct: 165 MTMSDRIAIMRKGKIAQIGT 184
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 79/251 (31%), Positives = 130/251 (51%), Gaps = 27/251 (10%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD--PDA 431
++E R + F Y Q SL AL+G SG GKST + + R D P A
Sbjct: 6 KMEARGLSFFYGDF---QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGA 62
Query: 432 ---GEVLIDGIDI--KKLQLKWIREKIGLVSQEPILFATSLRENIAYG------KENATD 480
GE+L+DG +I + + +R ++G+V Q+P F S+ EN+AYG K+ A
Sbjct: 63 RVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKA-- 120
Query: 481 QEIRTAIE--LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLD 538
+ +E L +AA + D++ L E LSGGQ+QR+ IARA+ P++LL+D
Sbjct: 121 -YLAERVERSLRHAALW-DEVKDRLH----ESALGLSGGQQQRLCIARALAVEPEVLLMD 174
Query: 539 EATSALDAESERIVQDALVKIMTSRTTVVVAHRL-TTIRNADLIAVVHQGKIVEKGTHDE 597
E SALD + + +++ + ++ T ++V H + R +D+ A + GK++E G ++
Sbjct: 175 EPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQ 234
Query: 598 LIKDPEGPYTQ 608
+ P T+
Sbjct: 235 IFTRPREKQTE 245
|
Length = 253 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 22/226 (9%)
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL-QLKWIREKI 453
SL V G L+G +G+GK+T+ +L+ FY P +G V+ G DI L + R I
Sbjct: 22 DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81
Query: 454 GLVSQEPILFAT-SLRENIAYGKENATD-----------QEIRTAIELANAAKFIDKLPK 501
Q LF ++ EN+A G +E R A E A ++ +
Sbjct: 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAREL--LEFV-- 137
Query: 502 GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA-ESERIVQDALVKI- 559
GL +A LS GQ++R+ IARA+ PK+LLLDE + L+ E+E + + + ++
Sbjct: 138 GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA-ELIRELR 196
Query: 560 -MTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPE 603
T +++ H + + AD I V++ G+++ +GT +E+ +P
Sbjct: 197 DRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPR 242
|
Length = 250 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-26
Identities = 80/248 (32%), Positives = 125/248 (50%), Gaps = 25/248 (10%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD--PD-- 430
I +DV+ Y + G SL AL+G SG GKST + + R D +
Sbjct: 5 ISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 431 -AGEVLIDGIDI--KKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENA-------TD 480
GE+ +G +I K+ L +R+++G+V Q+P F S+ +N+AYG + A D
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 481 QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEA 540
Q + +++ A K + LD A SGGQ+QRI IARA+ PK++LLDE
Sbjct: 122 QRVEESLKQAAIWK---ETKDNLDRNA----QAFSGGQQQRICIARALAVRPKVVLLDEP 174
Query: 541 TSALDAESERIVQDALVKIMTSRTTVVVAHRLTTI-RNADLIAVVHQGKIVEKGTHDELI 599
TSALD S +++ L+++ T ++V H L R +D A + G ++E G +E+
Sbjct: 175 TSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234
Query: 600 KDPEGPYT 607
P+ T
Sbjct: 235 IAPKKQIT 242
|
Length = 251 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-26
Identities = 74/217 (34%), Positives = 118/217 (54%), Gaps = 25/217 (11%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLV 456
+L + GT L+G SG GK+TV+ LV P G++ IDG D+ ++ + I +V
Sbjct: 26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICMV 83
Query: 457 SQEPILFA-TSLRENIAYG-------KENATDQEIRTAIELANAAKFIDKLPKGLDTMAG 508
Q LF SL EN+ YG KE Q ++ A+EL + A F D+ +D
Sbjct: 84 FQSYALFPHMSLGENVGYGLKMLGVPKEE-RKQRVKEALELVDLAGFEDRY---VD---- 135
Query: 509 EHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR--TTV 566
Q+SGGQ+QR+A+ARA++ PK+LL DE S LDA R +++ + ++ T++
Sbjct: 136 ----QISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSL 191
Query: 567 VVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELIKDP 602
V H + +D + V+++GKI++ G+ EL + P
Sbjct: 192 YVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228
|
Length = 351 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-26
Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 15/218 (6%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDI----KKLQLKWIREK 452
+P A+ G+SGSGK+T+I L+ PD GE++++G + K + L + +
Sbjct: 17 DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRR 76
Query: 453 IGLVSQEPILFA-TSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHG 511
IG V QE LF S+R N+ YG + A E R + + I+ L G+ + G
Sbjct: 77 IGYVFQEARLFPHLSVRGNLRYGMKRARPSERR-----ISFERVIELL--GIGHLLGRLP 129
Query: 512 TQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVA 569
+LSGG+KQR+AI RA+L +P++LL+DE +ALD + + L ++ + V+
Sbjct: 130 GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVS 189
Query: 570 HRLTTI-RNADLIAVVHQGKIVEKGTHDELIKDPEGPY 606
H L + R AD + V+ G++ G E+ P+ P+
Sbjct: 190 HSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 107 bits (271), Expect = 2e-26
Identities = 59/231 (25%), Positives = 106/231 (45%), Gaps = 19/231 (8%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+++R++ Y + SL+V G L+G +G+GK+T + ++ P +G
Sbjct: 1 LQIRNLTKTYK-KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFAT-SLRENIAY-----GKENATDQEIRTAIE 488
I+G I+ K R+ +G Q LF ++RE++ + G E
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPK------SEIKE 112
Query: 489 LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
+ L + A LSGG K+++++A A++ P +LLLDE TS LD S
Sbjct: 113 EVELLLRVLGLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 549 ERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598
R + D ++++ R+ ++ H + D IA++ GK+ G+ EL
Sbjct: 169 RRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 3e-26
Identities = 79/238 (33%), Positives = 115/238 (48%), Gaps = 33/238 (13%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
+ L V F Y P R L++P+G+ VA++G SG+GKST++ LI F P SG
Sbjct: 1 MLALDDVRFSYGHLP----MR-FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE 55
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAYG-----KQGGATEEEIIAA 1152
+L++ ++ + + + ++ QE LF T+ NI G K E++ AA
Sbjct: 56 ILINGVDHTASPPA--ERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAA 113
Query: 1153 TEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD- 1211
F+ LP +LSGGQ+QR+A+AR +++ ILLLDE SALD
Sbjct: 114 AAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALDP 162
Query: 1212 ---AESERVVQD-ALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264
AE +V ER M T ++V H AD + + NG IA QGS L
Sbjct: 163 ALRAEMLALVSQLCDERKM---TLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQEL 217
|
Length = 231 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 4e-26
Identities = 73/221 (33%), Positives = 116/221 (52%), Gaps = 13/221 (5%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD--PD---SGHVLLD--NIEL 1106
D Q + + L I + AL+G SG GKST + + R D P G VLLD +I
Sbjct: 15 DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK 74
Query: 1107 PKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ--GGATEEEIIAATEASNAHNFISA 1164
++ LR+++G+V Q+P F +I N+AYG + G ++++ E S +A
Sbjct: 75 SDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKG---AA 131
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224
L + + + + LSGGQ+QR+ IARA+ P++LL+DE TSALD S +++ ++
Sbjct: 132 LWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQE 191
Query: 1225 VMVNRTTVVVAHRL-TTIKNADIIAVVKNGVIAEQGSHDAL 1264
+ + T V+V H + + +D A NG I E G L
Sbjct: 192 LKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232
|
Length = 250 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 4e-26
Identities = 86/281 (30%), Positives = 127/281 (45%), Gaps = 47/281 (16%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKS-TVISLVERFYDPDA----GEVLIDGIDIKK 443
V+ G S + +G T ALVG+SGSGKS T +S++ P A G +L DG D+
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81
Query: 444 L---QLKWIR-EKIGLVSQEPILFATSLR----------ENIAY---GKENATDQEIRTA 486
QL+ +R KIG++ QEP+ TSL E + A
Sbjct: 82 ASERQLRGVRGNKIGMIFQEPM---TSLNPLHTIGKQLAEVLRLHRGLSRAAARARALEL 138
Query: 487 IE---LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSA 543
+E + K +D P H +LSGGQ+QR+ IA A+ P +L+ DE T+A
Sbjct: 139 LELVGIPEPEKRLDAYP---------H--ELSGGQRQRVMIAMALANEPDLLIADEPTTA 187
Query: 544 LDAESERIVQDALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600
LD + + D L ++ + + H L +R AD + V+ G+IVE GT + L
Sbjct: 188 LDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA 247
Query: 601 DPEGPYTQLVRLQE--GSKEAEDALAT---DADKLDSSFDI 636
P+ PYT+ + E G A + + L F I
Sbjct: 248 APQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPI 288
|
Length = 534 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 5e-26
Identities = 69/225 (30%), Positives = 124/225 (55%), Gaps = 8/225 (3%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERF---YDPDA---GEVLIDGIDIKKLQ 445
I ++ +P+ + ++G SGSGKST++ ++ R YD G+VL G DI ++
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 446 LKWIREKIGLVSQEPILFA-TSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLD 504
+R+++G+V Q+P F S+ +NIAY ++ +E R ++ L K +
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 505 TMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRT 564
+QLSGGQ+QR+ IARA+ PK+LL+DE TS +D + + ++ + ++
Sbjct: 145 DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIA 204
Query: 565 TVVVAHRLTTI-RNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
V+V+H + R AD +A ++ G++VE G+ +E+ P+ T+
Sbjct: 205 IVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
Length = 257 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 5e-26
Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 33/217 (15%)
Query: 376 ELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVL 435
E+ D+ Y P + S V G A+VG +G+GKST++ + P +G +
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 436 IDGIDIKKLQLKWIREKIGLVSQEPIL---FATSLRENIA---YGKEN-------ATDQE 482
+ G ++K R++IG V Q + F S+R+ + YG + A +
Sbjct: 58 VFGKPLEK-----ERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112
Query: 483 IRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATS 542
+ A+E ++ D+ +LSGGQ+QR+ +ARA++++P +LLLDE +
Sbjct: 113 VDEALERVGLSELADR-----------QIGELSGGQQQRVLLARALVQDPDLLLLDEPFA 161
Query: 543 ALDAESERIVQDALVKI-MTSRTTVVVAHRLTTIRNA 578
+D +++ + + L ++ T +VV H L +
Sbjct: 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEY 198
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 78/231 (33%), Positives = 112/231 (48%), Gaps = 27/231 (11%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IEL VS Y + L I G+ L+G SG GK+T++ LI F P SG +
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 1100 LLDNIE---LPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAYGKQGGATEEEIIAATEA 1155
LLD + LP K + + V Q LF T+ NIA+G + + I
Sbjct: 58 LLDGKDITNLPPHK-----RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKE-RV 111
Query: 1156 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE 1215
+ A + + + + QLSGGQ+QR+AIARA++ PK+LLLDE ALD +
Sbjct: 112 AEALDLVQLEGYANR-----KPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166
Query: 1216 RVVQDALERV--MVNRTTVVVAH----RLTTIKNADIIAVVKNGVIAEQGS 1260
+ +Q L+R+ + T V V H LT +D IAV+ G I + G+
Sbjct: 167 KDMQLELKRLQKELGITFVFVTHDQEEALTM---SDRIAVMNKGKIQQIGT 214
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 6e-26
Identities = 74/231 (32%), Positives = 117/231 (50%), Gaps = 15/231 (6%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD-----PDAGEVLIDGIDI-- 441
E Q S+ +P + AL+G SG GKST I + R D G+V I+G DI
Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83
Query: 442 KKLQLKWIREKIGLVSQEPILFATSLRENIAYGKE--NATDQEIRTAIELA-NAAKFIDK 498
+ + +R+ +G+V Q+P F S+ +N+AYG A +++ +E A +A D+
Sbjct: 84 PDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE 143
Query: 499 LPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVK 558
L + A LSGGQ+QR+ IAR + PKI+L DE TSALD S ++D ++
Sbjct: 144 TSDRLKSPA----LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN 199
Query: 559 IMTSRTTVVVAHRL-TTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
+ T V+V H + R +D G+++E G ++ +P T+
Sbjct: 200 LKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPREKSTE 250
|
Length = 258 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 7e-26
Identities = 79/233 (33%), Positives = 120/233 (51%), Gaps = 17/233 (7%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD--PDA---GEVLIDGIDIKK 443
+ Q +L V GT AL+G SG GK+T + + R +D P A G +L+DG DI
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75
Query: 444 LQLKWI--REKIGLVSQEPILFAT-SLRENIAYGKENA----TDQEIRTAIELANAAKFI 496
++ + R ++G+V Q+P F T S+ +N+ G + A D + A A
Sbjct: 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALW 135
Query: 497 DKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDAL 556
D++ L T A T LSGGQ+QR+ IARA+ P+ILL+DE TSALD S ++D +
Sbjct: 136 DEVKDRLKTPA----TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLM 191
Query: 557 VKIMTSRTTVVVAHRL-TTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
+ T ++V H + R +D + G +VE G D+L +P T+
Sbjct: 192 TDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPRDERTE 244
|
Length = 252 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 7e-26
Identities = 84/260 (32%), Positives = 130/260 (50%), Gaps = 42/260 (16%)
Query: 375 IELRDVY------FRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD 428
I+L+ Y F+ V+ G S + G T A+VG+SG GKST+ L+
Sbjct: 9 IDLKKHYPVKRGLFKPERL--VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET 66
Query: 429 PDAGEVLIDGIDIK---KLQLKWIREKIGLVSQEPILFATSL--RENIAYGKENATDQEI 483
P GE+ G D+ K +R+KI +V Q P + SL R+ + G+ I
Sbjct: 67 PTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNP--YG-SLNPRKKV--GQILEEPLLI 121
Query: 484 RTAIELAN-AAKFIDKLPK-GLDTMAGEHGTQ----LSGGQKQRIAIARAILKNPKILLL 537
T++ A K + + K GL EH + SGGQ+QRIAIARA++ +P +++
Sbjct: 122 NTSLSAAERREKALAMMAKVGLRP---EHYDRYPHMFSGGQRQRIAIARALMLDPDVVVA 178
Query: 538 DEATSALDAESERIVQDALVKIM--------TSRTTVVVAHRLTTIRN-ADLIAVVHQGK 588
DE SALD VQ ++ +M S V ++H L+ + + AD + V++ G+
Sbjct: 179 DEPVSALDVS----VQAQVLNLMMDLQQELGLS--YVFISHDLSVVEHIADEVMVMYLGR 232
Query: 589 IVEKGTHDELIKDPEGPYTQ 608
VEKGT +++ +P PYTQ
Sbjct: 233 CVEKGTKEQIFNNPRHPYTQ 252
|
Length = 327 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 8e-26
Identities = 72/214 (33%), Positives = 117/214 (54%), Gaps = 15/214 (7%)
Query: 1055 VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWL 1114
+Q N+ L +P+G+ ++G SG+GKST+I + P SG V++D +L S L
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSEL 77
Query: 1115 ---RQQMGLVSQE-PVLFNETIRTNIAYGKQ-GGATEEEIIAATEASNAHNFISALPHGY 1169
R+Q+G++ Q +L + T+ N+A + ++EI A + Y
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY 137
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MV 1227
+N LSGGQKQR+AIARA+ NPK+LL DEATSALD + + + + L+ + +
Sbjct: 138 PSN-------LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL 190
Query: 1228 NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
T +++ H + +K D +AV+ NG + EQG+
Sbjct: 191 GLTILLITHEMDVVKRICDCVAVISNGELIEQGT 224
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 8e-26
Identities = 80/237 (33%), Positives = 119/237 (50%), Gaps = 31/237 (13%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDI--------K 442
+ G L V G A++G SGSGK+T++ + P+AG + + I I +
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 443 KLQLKWIREKIGLVSQEPILFA-TSLRENIAYG----KENATDQEIRTAIELANAAKFID 497
K ++ +R+ +G V Q LF ++ ENI G K ++ A EL
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARAREL-------- 128
Query: 498 KLPK-GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDAL 556
L K GL + +LSGGQ+QR+AIARA+ P+++L DE TSALD E +V + L
Sbjct: 129 -LAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGEVL 184
Query: 557 VKIMT----SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
I RT V+V H ++ R+ AD + QG+IVE+G L DP+ P T+
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTR 241
|
Length = 250 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 9e-26
Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 22/210 (10%)
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118
+N+ L + G ++G +GSGKS ++ I F PDSG +LL+ ++ ++ +
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRDI 73
Query: 1119 GLVSQEPVLF-NETIRTNIAYG-----KQGGATEEEIIAATEASNAHNFISALPHGYETN 1172
V Q LF + T+ NIAYG E +++ E I L +
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLG----IDHLLNRKPET 129
Query: 1173 VGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTT 1231
LSGG++QR+AIARA++ NPKILLLDE SALD ++ +++ L+++ T
Sbjct: 130 -------LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT 182
Query: 1232 VV-VAHRLTTIKN-ADIIAVVKNGVIAEQG 1259
V+ V H AD +A++ NG + + G
Sbjct: 183 VLHVTHDFEEAWALADKVAIMLNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 9e-26
Identities = 65/231 (28%), Positives = 118/231 (51%), Gaps = 14/231 (6%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+E+ ++ Y VQ R++ G+ L+GE+G+GK+T++ +I PDSG V
Sbjct: 2 LEVTDLTKSYG--SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAY-GKQGGATEEEIIAATEASN 1157
+D ++ + S++R+++G++ E L+ T R N+ Y + G + +EI A
Sbjct: 60 TIDGVDTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIA--- 115
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
L + R + S G KQ++AIARA++ +P IL+LDE TS LD + R
Sbjct: 116 --ELSKRL--QLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRK 171
Query: 1218 VQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266
D ++++ R + +H + ++ D + V+ G + +GS +AL
Sbjct: 172 FHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 1e-25
Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 27/230 (11%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
IE+ ++ Y RP + ++ LS+ G+ AL+G +G+GKST++ I P SG
Sbjct: 4 MIEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 1099 VLLDNIELPKF----KLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQG------GATEEE 1148
+ + + K ++ ++ Q+ + P+ + + YGK+G +E+
Sbjct: 61 IKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLG-RYGKKGWFRRLNKKDKEK 119
Query: 1149 IIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATS 1208
+ A E + +GE LSGGQKQR+ +ARA+ +NP +LLLDE +
Sbjct: 120 VDEALERVGMEDLRDR-------QIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFT 168
Query: 1209 ALDAESERVVQDAL-ERVMVNRTTVVVAHRL-TTIKNADIIAVVKNGVIA 1256
+D ++ + D L E +T ++V H L + D + + +IA
Sbjct: 169 GVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIA 218
|
Length = 254 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 60/229 (26%), Positives = 111/229 (48%), Gaps = 22/229 (9%)
Query: 375 IELRDVYFRY-PARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
I + R+ + VQ G S V G L+G +G+GK+T + ++ +PDAG
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIAYG------KENATDQEIRTA 486
+DG D+ K + R ++G VS L+ + REN+ Y K + +
Sbjct: 62 ATVDGFDVVKEPAE-ARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEEL 120
Query: 487 IELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 546
+ + +D+ G T G +Q++AIARA++ +P +LLLDE T+ LD
Sbjct: 121 ADRLGMEELLDRRVGGFST-----------GMRQKVAIARALVHDPPVLLLDEPTTGLDV 169
Query: 547 ESERIVQDALVKIMTSRTTVVVA-HRLTTI-RNADLIAVVHQGKIVEKG 593
+ R +++ + ++ ++ + H + + R D + V+H+G++V +G
Sbjct: 170 MATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 85/267 (31%), Positives = 140/267 (52%), Gaps = 43/267 (16%)
Query: 372 EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA 431
E ++ + D++ RY E ++ G SL +G +++G SGSGKST + + P
Sbjct: 3 ENKLNVIDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE 59
Query: 432 GEVLIDGIDIK-------------KLQLKWIREKIGLVSQEPILFA-TSLRENIAYGKEN 477
G ++++G I K QL+ +R ++ +V Q L++ ++ EN+
Sbjct: 60 GSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ 119
Query: 478 A---TDQEIRTAIELANAAKFIDKLPKGLDTMA-GEHGTQLSGGQKQRIAIARAILKNPK 533
+ QE R A K++ K+ G+D A G++ LSGGQ+QR++IARA+ P+
Sbjct: 120 VLGLSKQEARE-----RAVKYLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPE 172
Query: 534 ILLLDEATSALDAESERIVQDALVKIMTS-----RTTVVVAHRLTTIRN-ADLIAVVHQG 587
+LL DE TSALD E +V + L +IM +T VVV H + R+ + + +HQG
Sbjct: 173 VLLFDEPTSALDPE---LVGEVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 228
Query: 588 KIVEKGTHDELIKDPEGPYTQLVRLQE 614
KI E+G ++L +P+ P RLQ+
Sbjct: 229 KIEEEGAPEQLFGNPQSP-----RLQQ 250
|
Length = 257 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-25
Identities = 71/209 (33%), Positives = 106/209 (50%), Gaps = 19/209 (9%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD----- 1093
A+E+R ++ Y D Q ++ + IP + A +G SG GKST++ R D
Sbjct: 25 ALEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNC 81
Query: 1094 PDSGHVLLD--NIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGK--QGGATEEEI 1149
G + LD NI K ++ LR+++G+V Q P F ++I N+ YG QG +
Sbjct: 82 RIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVL 141
Query: 1150 IAATEAS--NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEAT 1207
A E S A AL + + E LSGGQ+QR+ IARA+ P++LLLDE T
Sbjct: 142 DEAVERSLRGA-----ALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT 196
Query: 1208 SALDAESERVVQDALERVMVNRTTVVVAH 1236
SALD S +++ + + T V+V H
Sbjct: 197 SALDPISTLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 2e-25
Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 35/227 (15%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI 1104
++ Y P + ++ + G+ +A+VG +G+GKST++ I P SG +I
Sbjct: 5 LTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSG-----SI 56
Query: 1105 ELPKFKLSWLRQQMGLVSQE-------PVLFNETIRTNIAYGKQGG------ATEEEIIA 1151
+ L R+++G V Q P+ + + + YG +G A + ++
Sbjct: 57 RVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGL-YGHKGLFRRLSKADKAKVDE 115
Query: 1152 ATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
A E +GE LSGGQ+QR+ +ARA++++P +LLLDE + +D
Sbjct: 116 ALERVGLSELADR-------QIGE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164
Query: 1212 AESERVVQDALERV-MVNRTTVVVAHRLTTI-KNADIIAVVKNGVIA 1256
+++ + + L + T +VV H L + + D + ++ V+A
Sbjct: 165 PKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVA 211
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 73/233 (31%), Positives = 114/233 (48%), Gaps = 37/233 (15%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIR 450
SL V G L+G SG GK+T++ ++ AG + G DI +L + +
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--K 75
Query: 451 EKIGLVSQEPILFAT-SLRENIAYGKEN------ATDQEIRTAIELANAAKFIDKLPKGL 503
G+V Q LF ++ +NIAYG +N + + ++L GL
Sbjct: 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----------GL 124
Query: 504 DTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDAL---VKIM 560
++ QLSGGQ+QR+A+ARA+ +P +LLLDE SALDA V++ L ++ +
Sbjct: 125 PGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR----VREHLRTEIRQL 180
Query: 561 TSR---TTVVVAH----RLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPY 606
R TT++V H L+ AD I V++ G I + GT E+ + P P+
Sbjct: 181 QRRLGVTTIMVTHDQEEALSM---ADRIVVMNHGVIEQVGTPQEIYRHPATPF 230
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-25
Identities = 74/243 (30%), Positives = 123/243 (50%), Gaps = 25/243 (10%)
Query: 375 IELRDVYFRYPARPE-VQIFA--GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA 431
I+ ++V ++Y + E + A +L V G ++G++GSGKST+ + P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 432 GEVLIDGIDIKKLQLKW-IREKIGLVSQEP--ILFATSLRENIAYGKEN--ATDQEIRTA 486
G+V +DG+D + W IR K G+V Q P + AT + E++A+G EN +EIR
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 487 IELA----NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATS 542
++ + ++ P H LSGGQKQR+AIA + P+ ++ DE T+
Sbjct: 125 VDESLKKVGMYEYRRHAP---------H--LLSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 543 ALDAESERIVQDALVKIMTSR--TTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIK 600
LD R V + + ++ T +++ H + AD I V+ GK+V +GT E+ K
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK 233
Query: 601 DPE 603
+ E
Sbjct: 234 EVE 236
|
Length = 280 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 75/248 (30%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD--PDA- 431
IE ++ Y + + G L +P AL+G SG GKST++ R + +A
Sbjct: 5 IETVNLRVYYGSN---HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61
Query: 432 --GEVLIDGIDIKKLQLKWI--REKIGLVSQEPILFA-TSLRENIAYG-KENA---TDQE 482
GEV + G +I + I R ++G+V Q P F ++ +N+A G K N + +E
Sbjct: 62 VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE 121
Query: 483 IRTAIELA-NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEAT 541
+ +E A A D++ L+ LSGGQ+QR+ IARA+ PKILL+DE T
Sbjct: 122 LDERVEWALKKAALWDEVKDRLNDYPS----NLSGGQRQRLVIARALAMKPKILLMDEPT 177
Query: 542 SALDAESERIVQDALVKIMTSRTTVVVAHR-LTTIRNADLIAVVHQGKIVEKGTHDELIK 600
+ +D +++ L ++ T V+V H R +D +A ++ GK++E G ++ +
Sbjct: 178 ANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE 237
Query: 601 DPEGPYTQ 608
+PE T+
Sbjct: 238 NPEHELTE 245
|
Length = 253 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 13/207 (6%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD--PDS- 1096
I+ R V+F Y D + + + I VA +G SG GKST + L R D P +
Sbjct: 4 IDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 1097 --GHVLLD--NIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG-KQGGATEEEIIA 1151
G + +D NI ++ LR+ +G+V Q P F ++I N+AYG + G + I
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR 120
Query: 1152 ATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
+AL + + E LSGGQ+QR+ IARA+ +P +LL+DE SALD
Sbjct: 121 QRVEETLKG--AALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178
Query: 1212 AESERVVQDALERVMVNRTTVVVAHRL 1238
S V++ + + + T V+V H +
Sbjct: 179 PISTAKVEELIHELKKDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 3e-25
Identities = 69/221 (31%), Positives = 117/221 (52%), Gaps = 3/221 (1%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116
+ R + I + V +VG +GSGKST++ R + G + ++ E+ + L LR+
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384
Query: 1117 QMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGER 1176
Q ++ Q+PVLF+ T+R N+ + A+ E+ AA E +++ G ++ V E
Sbjct: 1385 QFSMIPQDPVLFDGTVRQNVDPFLE--ASSAEVWAALELVGLRERVASESEGIDSRVLEG 1442
Query: 1177 GVQLSGGQKQRIAIARAVLK-NPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVA 1235
G S GQ+Q + +ARA+LK +L+DEAT+ +D +R +Q + T + +A
Sbjct: 1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIA 1502
Query: 1236 HRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLV 1276
HRL T+ D I V+ +G +AE GS L+ + S+V
Sbjct: 1503 HRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMV 1543
|
Length = 1560 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 3e-25
Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 22/230 (9%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
IE+ + F+Y + + + L LSIP G AL+G +G+GKST++ + Y P G
Sbjct: 4 IIEVEDLHFRY--KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGR 61
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEP--VLFNETIRTNIAYGKQG-GATEEEII----A 1151
V + E+ W+R ++GLV Q+P +F+ T+ ++A+G G ++E+
Sbjct: 62 VKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEE 121
Query: 1152 ATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
A +A +F P+ LS GQK+R+AIA + +P +++LDE + LD
Sbjct: 122 ALKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLD 170
Query: 1212 AESERVVQDALERVMVNRTTVVVA-HRLT-TIKNADIIAVVKNGVIAEQG 1259
+ + + L+R+ TV+VA H + + AD + V+K G + +G
Sbjct: 171 PRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-25
Identities = 78/265 (29%), Positives = 131/265 (49%), Gaps = 39/265 (14%)
Query: 375 IELRDVYFRYPARP--------EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERF 426
+E+ D+ +P + ++ G SL + G T LVG+SGSGKST+ + R
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336
Query: 427 YDPDAGEVLIDGIDIKKL---QLKWIREKIGLVSQEPILFAT-----SLRENIAYG---- 474
GE+ DG DI L +++ +R ++ +V Q+P + + ++ + I G
Sbjct: 337 IPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP--YGSLSPRMTVGQIIEEGLRVH 393
Query: 475 --KENATDQEIRTAIELANAAKFIDKLPKGLD-TMAGEHGTQLSGGQKQRIAIARAILKN 531
K +A +++ R L GLD + + SGGQ+QRIAIARA++
Sbjct: 394 EPKLSAAERDQRVIEALEEV---------GLDPATRNRYPHEFSGGQRQRIAIARALILK 444
Query: 532 PKILLLDEATSALDAESERIVQDALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGK 588
P+++LLDE TSALD + V D L + + + ++H L +R + V+ GK
Sbjct: 445 PELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504
Query: 589 IVEKGTHDELIKDPEGPYTQ-LVRL 612
IVE+G + + +P+ YT+ L+
Sbjct: 505 IVEQGPTEAVFANPQHEYTRALLAA 529
|
Length = 534 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 14/229 (6%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG-- 1097
I++R V+F Y Q+ +N+ + P + A++G SG GKST++ + R D SG
Sbjct: 5 IKIRGVNFFYHKH---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 1098 ---HVLLDN--IELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG-KQGGATEEEIIA 1151
VLLDN I P + LR+++G+V Q+P F ++I N+A+G + G T + +
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121
Query: 1152 ATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
+ +AL + N+ + G+ LSGGQ+QR+ IAR + P+++L+DE SALD
Sbjct: 122 EVVEKSLRQ--AALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179
Query: 1212 AESERVVQDALERVMVNRTTVVVAHRL-TTIKNADIIAVVKNGVIAEQG 1259
S +++ ++ + N T +V H + + +D + G + E G
Sbjct: 180 PVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYG 228
|
Length = 251 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-25
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 16/195 (8%)
Query: 380 VYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGI 439
+ Y +P SL + SG ++G SG GK+T+++L+ F P G + ++G
Sbjct: 9 LSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67
Query: 440 DIKKLQLKWIREKIGLVSQEPILFA-TSLRENIAYG-KENATDQEIRTAIELANAAKFID 497
I+ + G+V Q L ++ +N+A+G + ++ R I A
Sbjct: 68 RIEGPG-----AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALV-- 120
Query: 498 KLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALV 557
GL+ ++ QLSGG +QR+ IARA+ P++LLLDE ALDA + +Q+ L+
Sbjct: 121 ----GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLL 176
Query: 558 KI--MTSRTTVVVAH 570
+ T + +++ H
Sbjct: 177 DLWQETGKQVLLITH 191
|
Length = 259 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-25
Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 11/218 (5%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLDNIEL-- 1106
D I +N+ L IP AL+G SG GKST I + R D GH+ LD +++
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 1107 PKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG-KQGGATEEEIIAATEASNAHNFISAL 1165
P + LR+++G+V Q+P F ++I N+AYG + G +E+ I + +AL
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKA--AAL 132
Query: 1166 PHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV 1225
+ + + + LSGGQ+QR+ IAR + +P+++L+DE SALD S ++D + ++
Sbjct: 133 WDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL 192
Query: 1226 MVNRTTVVVAHRL-TTIKNADIIAVVKNGVIAEQGSHD 1262
+ T V+V H + + + + NG I E G D
Sbjct: 193 KEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTD 230
|
Length = 250 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 5e-25
Identities = 65/196 (33%), Positives = 96/196 (48%), Gaps = 22/196 (11%)
Query: 1049 YPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL-- 1106
YP P+V + L + G+ +AL+G +G+GKST++ + P SG VL+D L
Sbjct: 1 YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 1107 PKFKLSWLRQQMGLVSQEP--VLFNETIRTNIAYGKQG-GATEEEIIA----ATEASNAH 1159
+ L RQ++GLV Q+P LF + ++A+G G +E E+ A A A
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS 118
Query: 1160 NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQ 1219
H LSGG+K+R+AIA AV P +LLLDE T+ LD +
Sbjct: 119 GLRERPTH-----------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML 167
Query: 1220 DALERVMVNRTTVVVA 1235
L R+ TVV++
Sbjct: 168 AILRRLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (262), Expect = 6e-25
Identities = 68/216 (31%), Positives = 119/216 (55%), Gaps = 13/216 (6%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD--PD---SGHVLLD--NIEL 1106
+ + +N+ + I + A++G SG GK+T++ I R D P G + +I
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74
Query: 1107 PKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ--GGATEEEIIAATEASNAHNFISA 1164
P+ ++ R+++G+V Q+P F +I N+A+G + G ++ ++ E S +A
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKK---AA 131
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224
L ++ + + G +LSGGQ+QR+ IARA+ P+++LLDE TSALD + + ++ LE
Sbjct: 132 LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEE 191
Query: 1225 VMVNRTTVVVAHRLT-TIKNADIIAVVKNGVIAEQG 1259
+ N T V+V H + I+ AD IA + G + E G
Sbjct: 192 LSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYG 227
|
Length = 250 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 6e-25
Identities = 67/215 (31%), Positives = 116/215 (53%), Gaps = 22/215 (10%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL---- 444
+ ++ G SL + G A+VG SGSGKST++ L+ +P +GEVL +G + KL
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 445 QLKWIREKIGLVSQEPILFA--TSLRENIAY----GKENATDQEIRTAIELANAAKFIDK 498
+ K +K+G + Q L T+L EN+A GK++ + + R A + ++K
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTAL-ENVAMPLLIGKKSVKEAKER-------AYEMLEK 128
Query: 499 LPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVK 558
+ GL+ ++LSGG++QR+AIARA++ P ++L DE T LD + +I+ D +++
Sbjct: 129 V--GLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE 186
Query: 559 IMTSRTT--VVVAHRLTTIRNADLIAVVHQGKIVE 591
+ T +VV H L + D + + G++
Sbjct: 187 LNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 6e-25
Identities = 73/247 (29%), Positives = 123/247 (49%), Gaps = 36/247 (14%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+ELR + + V+ G SL V G AL+G++G+GKST++ ++ Y PD+GE+
Sbjct: 9 LELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 435 LIDGIDIKKLQLKWIREK----IGLVSQEPILFAT-SLRENIAYGKENAT------DQEI 483
LIDG K + R+ I V QE L S+ ENI G+E + +
Sbjct: 66 LIDG---KPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAM 122
Query: 484 RTAIELANAAKFIDKL--PKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEAT 541
R A + + +L DT+ G+ LS Q+Q + IARA+ + ++L+LDE T
Sbjct: 123 R-----RRARELLARLGLDIDPDTLVGD----LSIAQRQMVEIARALSFDARVLILDEPT 173
Query: 542 SALDAESERIVQDALVKIMTSRTTVV-VAHRLTTI-RNADLIAVVHQGKIV------EKG 593
+AL + + D + ++ ++ ++HRL + AD I V+ G++V +
Sbjct: 174 AALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET 233
Query: 594 THDELIK 600
+ DEL++
Sbjct: 234 SEDELVR 240
|
Length = 500 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 7e-25
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 16/210 (7%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
++L+ V + I N+ S+ +G+ + G SG GKST++ ++ P SG +
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ--GGATEEEIIAATEASN 1157
L + ++ K RQQ+ +Q P LF +T+ N+ + Q + I
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLE-- 122
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
F ALP +T + + +LSGG+KQRI++ R + PK+LLLDE TSALD ++
Sbjct: 123 --RF--ALP---DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHN 175
Query: 1218 VQDALERVMVNRTTVV--VAHRLTTIKNAD 1245
V + + R + + V V H I +AD
Sbjct: 176 VNEIIHRYVREQNIAVLWVTHDKDEINHAD 205
|
Length = 225 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 7e-25
Identities = 69/221 (31%), Positives = 113/221 (51%), Gaps = 27/221 (12%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDI----KKLQLKWIREK 452
+ G A+VGQ+GSGKST+I + P G V +D I I K ++ +R++
Sbjct: 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKR 86
Query: 453 IGLVSQ--EPILFATSLRENIAYGKEN-------ATDQEIRTAIELANAAKFIDKLPKGL 503
IG+V Q E LF ++ I +G +N + R ++L + + + P
Sbjct: 87 IGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--- 143
Query: 504 DTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT-- 561
Q+SGGQ ++IAI + NP I++LDE T+ LD +S+R V L + T
Sbjct: 144 --------FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDE 195
Query: 562 SRTTVVVAHRLTTI-RNADLIAVVHQGKIVEKGTHDELIKD 601
++T ++V+H + + R AD + V+ +G IV + + EL KD
Sbjct: 196 NKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236
|
Length = 286 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 7e-25
Identities = 71/244 (29%), Positives = 119/244 (48%), Gaps = 30/244 (12%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLH-----VPSGTTAALVGQSGSGKSTVISLVERFYDP 429
I ++V F+Y Q A F+L +P G ++VG +GSGKST+ L+
Sbjct: 8 IVFKNVSFQY------QSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV 61
Query: 430 DAGEVLIDGIDIKKLQLKWIREKIGLVSQEP--ILFATSLRENIAYGKEN---ATDQEIR 484
+GE+ + I + +R+ IG+V Q P + ++ ++A+G EN D+ R
Sbjct: 62 KSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR 121
Query: 485 TAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
E +++ A LSGGQKQR+AIA + NP +++LDEATS L
Sbjct: 122 RVSEALKQVDMLER--------ADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSML 173
Query: 545 DAESE----RIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIK 600
D ++ +V+ VK + T + + H L+ AD + V+++G + ++GT E+
Sbjct: 174 DPDARQNLLDLVRK--VKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231
Query: 601 DPEG 604
E
Sbjct: 232 HAEE 235
|
Length = 269 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-24
Identities = 67/217 (30%), Positives = 109/217 (50%), Gaps = 24/217 (11%)
Query: 1063 LSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWL----RQQM 1118
L+I G+ ++G SGSGKST + ++ R +P +G + +D + K L R+++
Sbjct: 14 LAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKI 73
Query: 1119 GLVSQEPVLF-NETIRTNIAYGK--QGGATEEEIIAATEA---SNAHNFISALPHGYETN 1172
G+V Q+ LF + TI N + G G +E A E + P
Sbjct: 74 GMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD----- 128
Query: 1173 VGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRT 1230
+LSGG +QR+ +ARA+ P ILL+DEA SALD +QD L+++ + +T
Sbjct: 129 ------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKT 182
Query: 1231 TVVVAHRL-TTIKNADIIAVVKNGVIAEQGSHDALMK 1266
V + H L I+ D I ++K G I + G+ D +++
Sbjct: 183 IVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 24/225 (10%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IE++ ++FKY + ++ + G+ ++++G +GSGKST + LI+ + +SG +
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEP--VLFNETIRTNIAYG--KQGGATEEEIIAATEA 1155
++D L + + +R ++G+V Q P T+ ++A+G +G EE EA
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 1156 SN---AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
+F P +LSGGQKQR+AIA AV PKI++LDEATS LD
Sbjct: 125 LELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 1213 ESE----RVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNG 1253
E + ++ + T + + H L + +D + V+KNG
Sbjct: 174 EGRLELIKTIKGIRDD--YQMTVISITHDLDEVALSDRVLVMKNG 216
|
Length = 279 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-24
Identities = 75/246 (30%), Positives = 122/246 (49%), Gaps = 26/246 (10%)
Query: 379 DVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA-----GE 433
DVY+ + G S+ +P + AL+G SG GKST + + R D G
Sbjct: 52 DVYY-----GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGS 106
Query: 434 VLIDGIDIKK--LQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIEL-- 489
V +DG DI + + L +R+++G+V Q P F S+RENI+YG D L
Sbjct: 107 VELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLG 166
Query: 490 -ANAAKFIDKLPKGLDTMA---------GEHGTQLSGGQKQRIAIARAILKNPKILLLDE 539
+ + + + L A ++ LSGGQ+QR+ IAR + +P+++L+DE
Sbjct: 167 RDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDE 226
Query: 540 ATSALDAESERIVQDALVKIMTSRTTVVVAHRL-TTIRNADLIAV-VHQGKIVEKGTHDE 597
SALD + ++D + ++ T VVV H + R +D AV + G++VE D+
Sbjct: 227 PASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDK 286
Query: 598 LIKDPE 603
+ ++PE
Sbjct: 287 IFENPE 292
|
Length = 305 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 1e-24
Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 15/232 (6%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+EL+ V + I SL V +G A+ G SG GKST++ +V P +G +
Sbjct: 4 LELKQVGYLAGDAK---ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAK 494
L +G D+ L+ + R+++ +Q P LF ++ +N+ + + + R A A
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAA-----ALD 115
Query: 495 FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD 554
+ + D++ ++ T+LSGG+KQRIA+ R + PKILLLDE TSALD ++R +++
Sbjct: 116 LLARFALP-DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEE 174
Query: 555 ALVKIMT--SRTTVVVAH-RLTTIRNADLIAVVHQGKIVEKGTHDELIKDPE 603
+ + + + + + H + IR+AD + + G G E ++
Sbjct: 175 MIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA---GEMQEARQELA 223
|
Length = 223 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-24
Identities = 71/232 (30%), Positives = 119/232 (51%), Gaps = 27/232 (11%)
Query: 1040 IELRCVSFKYP--TRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
I + +SF+YP ++ ++ S+ G+ VA+VG +GSGKST+ L+ P++G
Sbjct: 6 IRVEHISFRYPDAATYALK---DVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEP--VLFNETIRTNIAYG-KQGGATEEEII---- 1150
+ + + L + + +R+Q+G+V Q P T++ ++A+G + G EE++
Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVD 122
Query: 1151 AATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL 1210
A +F++ PH +LSGGQKQR+AIA + P I++LDEATS L
Sbjct: 123 QALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSML 171
Query: 1211 DAESERVVQDALERVMVNRTTVVV---AHRLTTIKNADIIAVVKNGVIAEQG 1259
D R V + + R + + + V H L AD + V+ G I E+G
Sbjct: 172 DPRGRREVLETV-RQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEG 222
|
Length = 279 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 67/215 (31%), Positives = 111/215 (51%), Gaps = 21/215 (9%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF---K 1110
D ++ + + LSI G+ VA+VG SGSGKST++ L+ +P SG VL + L K +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 1111 LSWLR-QQMGLVSQEPVLFNE-TIRTNIAY----GKQGGATEEEIIAATEASNAHNFISA 1164
+ LR +++G + Q L + T N+A GK+ +E A+ +
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER--------AYEMLEK 128
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224
+ G E + R +LSGG++QR+AIARA++ P ++L DE T LD + +++ D +
Sbjct: 129 V--GLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE 186
Query: 1225 VMVNRTT--VVVAHRLTTIKNADIIAVVKNGVIAE 1257
+ T +VV H L K D + +K+G +
Sbjct: 187 LNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-24
Identities = 62/229 (27%), Positives = 111/229 (48%), Gaps = 21/229 (9%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
I + VSF+Y + + +++ +IP G+ ++VG +GSGKST+ L+ SG +
Sbjct: 8 IVFKNVSFQYQSDASFTL-KDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEP--VLFNETIRTNIAYGKQGGAT-----EEEIIAA 1152
+N + LR+ +G+V Q P ++ ++A+G + A + A
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126
Query: 1153 TEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
+ + P+ LSGGQKQR+AIA + NP +++LDEATS LD
Sbjct: 127 LKQVDMLERADYEPNA-----------LSGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175
Query: 1213 ESERVVQDALERVMVNR--TTVVVAHRLTTIKNADIIAVVKNGVIAEQG 1259
++ + + D + +V T + + H L+ AD + V+ G + ++G
Sbjct: 176 DARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEG 224
|
Length = 269 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 2e-24
Identities = 60/187 (32%), Positives = 102/187 (54%), Gaps = 13/187 (6%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW 1113
D +I N+ LS+ +G+ +A+ G SG GKST++ ++ P SG +L + ++ K
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 1114 LRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFIS--ALPHGYET 1171
RQQ+ +Q P LF +T+ N+ + Q + + A + ++ ALP +
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRR------PDRAAALDLLARFALPD---S 125
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NR 1229
+ + +LSGG+KQRIA+ R + PKILLLDE TSALD ++R +++ + R + N
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNV 185
Query: 1230 TTVVVAH 1236
+ + H
Sbjct: 186 AVLWITH 192
|
Length = 223 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 64/228 (28%), Positives = 111/228 (48%), Gaps = 8/228 (3%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD--PDA---GEVLIDGIDI-- 441
E ++ +P AL+G SG GKST++ R D P G++L +G +I
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77
Query: 442 KKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPK 501
+ +R KIG+V Q P F S+ EN+AYG ++ +T + + L
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD 137
Query: 502 GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT 561
+ + LSGGQ+QR+ IAR + NP+++L+DE SALD + ++D + +
Sbjct: 138 EVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK 197
Query: 562 SRTTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
T ++V H + R +D ++ GK++E ++ ++P T+
Sbjct: 198 EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHEELTE 245
|
Length = 253 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 9/244 (3%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW 448
E + G SL + G ++G +G+GKST+++ + P +G++LIDG+D+ K +
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK 77
Query: 449 IREKIGLVSQEPIL-FATSL--RENIAYGKENATDQEIRTAIELANAAKF---IDKLPKG 502
+ V Q+P+ A L EN+A + + + +A+ + F + +L G
Sbjct: 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLG 137
Query: 503 LDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS 562
L+ + LSGGQ+Q +++ A L PKILLLDE T+ALD ++ V + KI+
Sbjct: 138 LENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEE 197
Query: 563 R--TTVVVAHRL-TTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEA 619
TT++V H + + + + ++H GKIV T +E Q+ G+
Sbjct: 198 HKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEEKASLTVLDLIQMFEKIRGATLD 257
Query: 620 EDAL 623
+DAL
Sbjct: 258 DDAL 261
|
Length = 263 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 2e-24
Identities = 61/218 (27%), Positives = 115/218 (52%), Gaps = 5/218 (2%)
Query: 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
G++ ++D+ +Y + S + G L+G++GSGKST++S R + + G
Sbjct: 1 GQMTVKDLTAKYTEGGNA-VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-G 58
Query: 433 EVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENI-AYGKENATDQEIRTAIELAN 491
++ IDG+ + L+ R+ G++ Q+ +F+ + R+N+ YGK + D+EI E
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWS--DEEIWKVAEEVG 116
Query: 492 AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI 551
I++ P LD + + G LS G KQ + +AR++L KILLLDE ++ LD + ++
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176
Query: 552 VQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKI 589
++ L + T ++ HR+ + V+ + K+
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKV 214
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-24
Identities = 69/209 (33%), Positives = 106/209 (50%), Gaps = 28/209 (13%)
Query: 1063 LSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVS 1122
L++ G+ VA++G SG+GKST++ LI F +P SG + +++ L+ ++ + ++
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSMLF 76
Query: 1123 QEPVLFNE-TIRTNIAYG-----KQGGATEEEIIAATEASNAHNFISALPHGYETNVGER 1176
QE LF T+R NI G K +E+++ A + +++ LP
Sbjct: 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE--------- 127
Query: 1177 GVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER-----VVQDALERVMVNRTT 1231
QLSGGQ+QR+A+AR +++ ILLLDE SALD V Q ER RT
Sbjct: 128 --QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSER---QRTL 182
Query: 1232 VVVAHRLT-TIKNADIIAVVKNGVIAEQG 1259
++V H L+ A IAVV G I
Sbjct: 183 LMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 71/233 (30%), Positives = 106/233 (45%), Gaps = 32/233 (13%)
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA----GEVLIDGIDIKKLQLKWIR 450
+L + G ALVG+SGSGKS + P GE+L+DG + L L
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL--LPLSIRG 61
Query: 451 EKIGLVSQEPI-----LF--ATSLRENI-AYGK--ENATDQ--EIRTAIELANAAKFIDK 498
I + Q P LF E + + GK + A E A+ L + + + K
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKK 121
Query: 499 LPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVK 558
P QLSGG QR+ IA A+L P L+ DE T+ LD ++ V L +
Sbjct: 122 YP-----------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 559 IMTSRTT--VVVAHRLTTI-RNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
+ T +++ H L + R AD +AV+ G+IVE+GT E+ +P+ T+
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 3e-24
Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 27/227 (11%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
++ D+ Y + + SLHV G +G +G+GK+T + ++ PD+GE+
Sbjct: 1 LKTNDLTKTYGKKRVLD---DISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFAT-SLRENI-----AYGKENATDQEIRTAIE 488
DG +K +IG + + P + + REN+ G E+ +
Sbjct: 58 TFDGKSYQKNIEAL--RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVG 115
Query: 489 LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
L ++AK K KG S G KQR+ IA A+L NP +L+LDE T+ LD +
Sbjct: 116 LKDSAK---KKVKGF-----------SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161
Query: 549 ERIVQDALVKIMTSRTTVVVA-HRLTTIRN-ADLIAVVHQGKIVEKG 593
+ +++ ++ + TV+++ H L+ I+ AD I ++++GK++E+G
Sbjct: 162 IKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-24
Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 19/223 (8%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIR 450
Q+ SL +PSG AL+G SGSGK+T++ ++ +G + G D+ +L +
Sbjct: 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR--D 73
Query: 451 EKIGLVSQEPILFA-TSLRENIAYG------KENATDQEIRTAIELANAAKFIDKLPKGL 503
K+G V Q LF ++ +NIA+G +E I+ + + ++ + L
Sbjct: 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKV-----TQLLEMVQ--L 126
Query: 504 DTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR 563
+A + QLSGGQKQR+A+ARA+ P+ILLLDE ALDA+ + ++ L ++
Sbjct: 127 AHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEEL 186
Query: 564 --TTVVVAH-RLTTIRNADLIAVVHQGKIVEKGTHDELIKDPE 603
T+V V H + + AD + V+ QG I + GT D++ ++P
Sbjct: 187 KFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA 229
|
Length = 353 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 76/244 (31%), Positives = 126/244 (51%), Gaps = 28/244 (11%)
Query: 375 IELRDVYFRYPA-RP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
I L++V + Y A P E + +L + G+ A +G +GSGKST++ L+ + P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 433 EVLIDGIDI----KKLQLKWIREKIGLVSQ--EPILFATSLRENIAYGKEN---ATDQEI 483
V +D I K +K IR+K+GLV Q E LF ++ +++A+G +N + ++
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 484 RTAIE----LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDE 539
A E + + +K P +LSGGQ +R+AIA + PKIL+LDE
Sbjct: 123 ALAREKLALVGISESLFEKNP-----------FELSGGQMRRVAIAGILAMEPKILVLDE 171
Query: 540 ATSALDAESERIVQDALVKIMTSRTTVV-VAHRLTTIRN-ADLIAVVHQGKIVEKGTHDE 597
T+ LD + + + K+ S T+V V H + + N AD + V+ +GK+V G +
Sbjct: 172 PTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231
Query: 598 LIKD 601
+ +D
Sbjct: 232 IFQD 235
|
Length = 280 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 4e-24
Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 11/207 (5%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
++L++V + I S + +G + G SG GKST++ +V P +G +
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAK 494
L +G DI L+ + R+++ +Q P LF ++ +N+ + + Q L + +
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIF-LDDLER 123
Query: 495 FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD 554
F LP DT+ ++ +LSGG+KQRI++ R + PK+LLLDE TSALD ++ V +
Sbjct: 124 F--ALP---DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE 178
Query: 555 ALVKIMTSRTTVV--VAHRLTTIRNAD 579
+ + + + V V H I +AD
Sbjct: 179 IIHRYVREQNIAVLWVTHDKDEINHAD 205
|
Length = 225 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 4e-24
Identities = 68/228 (29%), Positives = 118/228 (51%), Gaps = 25/228 (10%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+E+R + R+P V SL V G AL+G++G+GKST++ ++ Y PD+GE+
Sbjct: 5 LEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 435 LIDGIDIKKLQLK----WIREKIGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIEL 489
+DG K++++K IR IG+V Q +L T ++ ENI G E + I
Sbjct: 62 RVDG---KEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQAR 118
Query: 490 ANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL-DAES 548
A + ++ GL LS G++QR+ I +A+ + ++L+LDE T+ L E+
Sbjct: 119 ARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA 176
Query: 549 ERIVQDALVKIMTS-----RTTVVVAHRLTTIRN-ADLIAVVHQGKIV 590
+ L +I+ +T + + H+L + AD + V+ +GK+V
Sbjct: 177 DE-----LFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-24
Identities = 70/231 (30%), Positives = 114/231 (49%), Gaps = 29/231 (12%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+EL V+ ++ +V +L L I G+ V L+G SG GK+T + +I +P SG +
Sbjct: 1 VELENVTKRFG---NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 1100 LLDNIEL----PKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYG-KQGGATEEEIIAAT 1153
+ ++ PK + + +V Q L+ + T+ NIA+G K ++EI
Sbjct: 58 YIGGRDVTDLPPK------DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERV 111
Query: 1154 EASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAE 1213
I L QLSGGQ+QR+A+ RA+++ PK+ L+DE S LDA+
Sbjct: 112 REVAELLQIEHLLDRKPK-------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
Query: 1214 SERVVQDALERVM--VNRTTVVVAHRLT---TIKNADIIAVVKNGVIAEQG 1259
++ L+R+ + TT+ V H T+ AD IAV+ +G I + G
Sbjct: 165 LRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTM--ADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 5e-24
Identities = 74/244 (30%), Positives = 128/244 (52%), Gaps = 21/244 (8%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHV--PSGTTAALVGQSGSGKSTVISLVERFYDPDA 431
+I + V RY + + A + ++V PSG+ A++G +GSGKST++ + P +
Sbjct: 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 432 GEVLIDGIDI----KKLQLKWIREKIGLVSQ--EPILFATSLRENIAYGKEN--ATDQEI 483
G V I I K +LK +R+K+G+V Q E LF ++ ++I +G N ++++
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEED- 120
Query: 484 RTAIELANAAKFIDKLPKGLDTMAGEHGT-QLSGGQKQRIAIARAILKNPKILLLDEATS 542
A + I+ + GL +LSGGQ +R+AIA + P++L+LDE T+
Sbjct: 121 ----AKQKAREMIELV--GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTA 174
Query: 543 ALDAESERIVQDALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELI 599
LD + + + + K+ + TTV+V H + AD I V+H+G + +GT E+
Sbjct: 175 GLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234
Query: 600 KDPE 603
DP+
Sbjct: 235 ADPD 238
|
Length = 290 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 5e-24
Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 43/209 (20%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLV--ERFYDPDAGEVLIDGIDIKKLQLKW 448
Q+ S G A++G SG+GKST+++ + R +GEVLI+G + K +
Sbjct: 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79
Query: 449 IREKIGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMA 507
R+ IG V Q+ IL T ++RE + + AAK +GL
Sbjct: 80 FRKIIGYVPQDDILHPTLTVRETLMF------------------AAKL-----RGL---- 112
Query: 508 GEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTV 566
SGG+++R++IA ++ NP +L LDE TS LD+ S V L ++ T RT +
Sbjct: 113 -------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTII 165
Query: 567 VVAHRLTT--IRNADLIAVVHQGKIVEKG 593
H+ ++ D + ++ QG+++ G
Sbjct: 166 CSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 6e-24
Identities = 71/240 (29%), Positives = 128/240 (53%), Gaps = 5/240 (2%)
Query: 373 GEIELRDVYFRY-PARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA 431
G + V RY P V G S + +VG++GSGKST++ R +
Sbjct: 1307 GSLVFEGVQMRYREGLPLV--LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG 1364
Query: 432 GEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELAN 491
GE+ ++G +I L+ +R + ++ Q+P+LF ++R+N+ E A+ E+ A+EL
Sbjct: 1365 GEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLE-ASSAEVWAALELVG 1423
Query: 492 AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILK-NPKILLLDEATSALDAESER 550
+ + +G+D+ E G+ S GQ+Q + +ARA+LK +L+DEAT+ +D +R
Sbjct: 1424 LRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDR 1483
Query: 551 IVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610
+Q ++ ++ T + +AHRL T+ D I V+ G + E G+ EL+ + + + +V
Sbjct: 1484 QIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMV 1543
|
Length = 1560 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 6e-24
Identities = 75/235 (31%), Positives = 124/235 (52%), Gaps = 16/235 (6%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD--PDS- 1096
+E R +SF Y D Q ++ L + AL+G SG GKST + + R D P +
Sbjct: 7 MEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR 63
Query: 1097 --GHVLLD--NIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG-KQGGATEEEIIA 1151
G +LLD NI P + LR+++G+V Q+P F ++I N+AYG + G ++ +A
Sbjct: 64 VEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLA 123
Query: 1152 A-TEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL 1210
E S H +AL + + E + LSGGQ+QR+ IARA+ P++LL+DE SAL
Sbjct: 124 ERVERSLRH---AALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASAL 180
Query: 1211 DAESERVVQDALERVMVNRTTVVVAHRL-TTIKNADIIAVVKNGVIAEQGSHDAL 1264
D + + +++ + + T ++V H + + +D+ A G + E G + +
Sbjct: 181 DPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235
|
Length = 253 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 7e-24
Identities = 63/241 (26%), Positives = 113/241 (46%), Gaps = 23/241 (9%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
A+E+ +SF+Y R + ++ ++ G+ VAL+G +G+GKST+ +L+ R Y G
Sbjct: 1 ALEVAGLSFRYGARRALD---DVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVL-FNETIRTNIAY-----GKQGGATEEEIIAA 1152
+ + +L + + L ++G+V Q+P L + ++R N+ Y G I
Sbjct: 58 ISVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAEL 116
Query: 1153 TEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
G ++ +L+GG ++R+ IARA+L P +LLLDE T LD
Sbjct: 117 LARL-----------GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDP 165
Query: 1213 ESERVVQDALERVMVNRTTVVV--AHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDG 1270
S + + + ++ V+ H + I+ D + V+ G + G+ L T G
Sbjct: 166 ASRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGG 225
Query: 1271 A 1271
A
Sbjct: 226 A 226
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (259), Expect = 8e-24
Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 17/245 (6%)
Query: 376 ELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD-----PD 430
E+R+ F Y R + + +L + A +G SG GKST + + + D
Sbjct: 82 EIRNFNFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 431 AGEVLIDGIDI--KKLQLKWIREKIGLVSQEPILFATSLRENIAYGKEN--ATDQEIRTA 486
GE+ G + KK+ +R +IG+V Q+P F S+ +N+AYG N D++I
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 487 I--ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
I + +A D++ LD + G LSGGQ+QR+ IARAI P++LL+DE TSAL
Sbjct: 201 IVEKSLKSAALWDEVKDDLD----KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSAL 256
Query: 545 DAESERIVQDALVKIMTSRTTVVVAHRLTTI-RNADLIAVVHQGKIVEKGTHDELIKDPE 603
D + +++ ++++ + ++V H + R +D +QG I E G + P+
Sbjct: 257 DPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPK 316
Query: 604 GPYTQ 608
T+
Sbjct: 317 NKRTK 321
|
Length = 329 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 37/232 (15%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYD--PDA---GEVLIDGIDI--KKLQLKWI 449
+L++ + A +G SG GKSTV+ + R ++ P A GEVL+DG D+ + +
Sbjct: 24 NLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83
Query: 450 REKIGLVSQEPILFAT-SLRENIAYG--------KENATD---QEIRTAIELANAAKFID 497
R IG+V Q P F T S+R+N+ G K++ + + +R A L N K D
Sbjct: 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGA-NLWNEVK--D 140
Query: 498 KLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALV 557
+L K G LSGGQ+QR+ IARAI P +LL+DE SALD S ++D +
Sbjct: 141 RLDKP--------GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLIN 192
Query: 558 KIMTSRTTVVVAHRL-TTIRNAD------LIAVVHQGKIVEKGTHDELIKDP 602
++ T V+V H + R +D L A G++VE +++ +P
Sbjct: 193 ELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSNP 244
|
Length = 258 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-23
Identities = 71/214 (33%), Positives = 111/214 (51%), Gaps = 16/214 (7%)
Query: 407 ALVGQSGSGKSTVISLVERFYD--PD---AGEVLIDGIDI--KKLQLKWIREKIGLVSQE 459
A++G SG GKST + + R D P G ++ DG DI K +R+KIG+V Q+
Sbjct: 69 AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128
Query: 460 PILFATSLRENIAYGKENATDQEIRTAIELAN----AAKFIDKLPKGLDTMAGEHGTQLS 515
P F S+ +NIAYG + + E+ A D++ LD A LS
Sbjct: 129 PNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNA----LGLS 184
Query: 516 GGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTI 575
GGQ+QR+ +AR + P+ILLLDE TSALD ++ ++D + ++ S T ++V H +
Sbjct: 185 GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQA 244
Query: 576 -RNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
R +D ++G +VE +L +P+ T+
Sbjct: 245 SRVSDYTMFFYEGVLVEHAPTAQLFTNPKDRMTE 278
|
Length = 286 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 71/229 (31%), Positives = 116/229 (50%), Gaps = 28/229 (12%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD--PD---SGHVLLDNIEL--PK 1108
QI ++ L I + A +G SG GKST + R D P+ G + +D I++
Sbjct: 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD 78
Query: 1109 FKLSWLRQQMGLVSQEPVLFNETIRTNIAYG-KQGGATE-----EEIIAATEASNAHNFI 1162
+ LR ++G+V Q+P F ++I N+AYG K G + +EI+ + S
Sbjct: 79 TNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSV----- 133
Query: 1163 SALPHGYETNVGER----GVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV 1218
G +G+R +LSGGQ+QR+ IARA+ P +LL+DE SALD + V+
Sbjct: 134 -----GLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVI 188
Query: 1219 QDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266
++ ++ + N T +VV H + K +D +A ++G I E + + K
Sbjct: 189 ENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237
|
Length = 251 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI 1104
+S Y +P ++ L+I SG+ V ++G SG GK+T++ LI F P G + L+
Sbjct: 9 LSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67
Query: 1105 ELPKFKLSWLRQQMGLVSQEPVLFN-ETIRTNIAYGKQGGATEEEIIAATEASNAHNFIS 1163
++ + G+V Q L + N+A+G Q E+ A AH ++
Sbjct: 68 -----RIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEK----AQRREIAHQMLA 118
Query: 1164 ALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDAL 1222
+ G E + QLSGG +QR+ IARA+ P++LLLDE ALDA + +Q+ L
Sbjct: 119 LV--GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL 175
|
Length = 259 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 81/272 (29%), Positives = 130/272 (47%), Gaps = 22/272 (8%)
Query: 375 IELRDVYFRYP-ARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
I L +V + YP P ++ +L + G ++G++GSGKST+ + P G+
Sbjct: 2 IRLENVSYSYPDGTPALE---NINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGK 58
Query: 434 VLIDGIDIKKL-QLKWIREKIGLVSQEP--ILFATSLRENIAYGKENAT--DQEIRTAIE 488
VL+ GID +L+ IR+ +G+V Q P ++ E++A+G EN EIR ++
Sbjct: 59 VLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVD 118
Query: 489 LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
A A GL+ LSGGQ Q +A+A + P+ L+ DE TS LD +S
Sbjct: 119 RALAEI-------GLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171
Query: 549 ERIVQDALVKIM-TSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPY- 606
V + + K+ +T V + H L + +AD I V+ +GKIV +G + ++ D
Sbjct: 172 GIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTL 231
Query: 607 ----TQLVRLQEGSKEAEDALATDADKLDSSF 634
L+ L E K + + SSF
Sbjct: 232 GLTPPSLIELAENLKMHGVVIPWENTSSPSSF 263
|
Length = 274 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 70/197 (35%), Positives = 105/197 (53%), Gaps = 22/197 (11%)
Query: 400 VPSGTTAALVGQSGSGKSTVISLVERFYD-----PDAGEVLIDGIDI--KKLQLKWIREK 452
+P G AL+G SG GKSTV+ + R D G VL DG D+ ++ +R +
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 453 IGLVSQEPILFATSLRENIAYGKE-NATDQEIRTAIE--LANAAKF---IDKLPKGLDTM 506
IG+V Q+P F S+ ENIA+G N ++ +E L AA + DKL
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKL------- 148
Query: 507 AGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTV 566
E G LSGGQ+QR+ IAR I P+++L+DE SALD S +++ + ++ + T V
Sbjct: 149 -NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIV 207
Query: 567 VVAHRL-TTIRNADLIA 582
+V H + +R +D+ A
Sbjct: 208 IVTHNMQQAVRVSDMTA 224
|
Length = 269 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 19/238 (7%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+E+ ++ F+Y +V G S + G +++GQ+GSGKST L++ ++ G+V
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEP--ILFATSLRENIAYGKENA---TDQEIRTAIEL 489
IDG + + +R KIG+V Q P ++ +++A+G EN ++ I+ E
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 490 ANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALD---- 545
A +D +LSGGQKQR+A+A I P+I++LDE+TS LD
Sbjct: 125 LLAVNMLD--------FKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176
Query: 546 AESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPE 603
E R++ + +K T + + H L ++D I V+ G+I+++ EL E
Sbjct: 177 QEIMRVIHE--IKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232
|
Length = 277 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 69/240 (28%), Positives = 120/240 (50%), Gaps = 24/240 (10%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE RD+ + Y + + P + A++G +G+GKST+ P +G V
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEP--ILFATSLRENIAYG------KENATDQEIRTA 486
LI G I K ++ +R+ +GLV Q P +F+ ++ ++IA+G E + +A
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 487 IELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 546
+ + + D++P LSGG+K+R+AIA I P++L+LDE T+ LD
Sbjct: 122 LHMLGLEELRDRVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170
Query: 547 ESERIVQDALVKIMTS--RTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPE 603
+ + + D L + + T + H+L + AD I V+ +G+IV GT +E+ P+
Sbjct: 171 QGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230
|
Length = 277 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 3e-23
Identities = 51/227 (22%), Positives = 111/227 (48%), Gaps = 23/227 (10%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
++L ++ +Y + + + L++ G L+G +G+GK+T++ ++ P SG +
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAY-----GKQGGATEEEIIAAT 1153
+D ++ K LR+++G + QE ++ N T+R + Y G + +
Sbjct: 57 RIDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 1154 EASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAE 1213
E N + ++ LSGG ++R+ IA+A++ +P IL++DE T+ LD E
Sbjct: 116 ELVNLGDR-----------AKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
Query: 1214 SERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259
++ L + +R ++ H + +++ + +AV+ G + +G
Sbjct: 165 ERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 3e-23
Identities = 61/192 (31%), Positives = 101/192 (52%), Gaps = 10/192 (5%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-DS----GHVLLD--NIEL 1106
D Q ++ + IP + A++G SG GKST + I R D D+ G + N+
Sbjct: 51 DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110
Query: 1107 PKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALP 1166
LR+++G+V Q+P F ++I N+AYG + + +I E S +AL
Sbjct: 111 ADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRR---AALW 167
Query: 1167 HGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM 1226
+ + G+ LSGGQ+QR+ IARA+ +P+++L+DE SALD + ++D +E +
Sbjct: 168 DEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227
Query: 1227 VNRTTVVVAHRL 1238
T V+V H +
Sbjct: 228 EEYTVVIVTHNM 239
|
Length = 285 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-23
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 31/201 (15%)
Query: 407 ALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDI----KKLQLKWIREKIGLVSQEPIL 462
AL G SGSGK+++I+++ PD G + ++G + K + L + +IG V Q+ L
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87
Query: 463 FA-TSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQR 521
F ++R N+ YG + + + L +D+ P LSGG+KQR
Sbjct: 88 FPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQR 136
Query: 522 IAIARAILKNPKILLLDEATSALD----AES----ERIVQDALVKIMTSRTTVVVAHRLT 573
+AI RA+L P++LL+DE ++LD E ER+ + + I + V+H L
Sbjct: 137 VAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPI------LYVSHSLD 190
Query: 574 TI-RNADLIAVVHQGKIVEKG 593
+ R AD + V+ GK+ G
Sbjct: 191 EVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 23/228 (10%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYD--PDA---GEVLIDGIDI--KKLQLKWI 449
S+ P + A++G SG GKSTV+ + R +D P A G++L+D DI + + I
Sbjct: 24 SMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83
Query: 450 REKIGLVSQEPILF-ATSLRENIAYG-------KENATDQEIRTAIELANAAKFIDKLPK 501
R ++G+V Q+P F A S+ +N+ G + D+ + ++++ D++
Sbjct: 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLK---RVALWDEVKD 140
Query: 502 GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT 561
L + A E LSGGQ+QR+ IAR I P+++L+DE SALD S +++ + ++
Sbjct: 141 RLKSNAME----LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE 196
Query: 562 SRTTVVVAHRL-TTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
T ++V H + R +D A + G +VE G ++ PE T+
Sbjct: 197 KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPEKKQTE 244
|
Length = 252 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.5 bits (249), Expect = 3e-23
Identities = 66/224 (29%), Positives = 109/224 (48%), Gaps = 18/224 (8%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL-K 447
++Q G SL V G AL+G++G+GK+T++ + P +G ++ DG DI L +
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74
Query: 448 WIREKIGLVSQEPILFAT-SLRENIAYGKEN-ATDQEIRTAIELANAAKFIDKLPKGLDT 505
R I V + +F ++ EN+ G + +E F P+ L
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYEL-F----PR-LKE 128
Query: 506 MAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD---ALVKI--M 560
+ LSGG++Q +AIARA++ PK+LLLDE + L + +IV++ A+ ++
Sbjct: 129 RRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKELRKE 185
Query: 561 TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPE 603
T ++V AD V+ G+IV GT EL+ DP+
Sbjct: 186 GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229
|
Length = 237 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 3e-23
Identities = 68/213 (31%), Positives = 97/213 (45%), Gaps = 18/213 (8%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL---Q 445
E+ I G L V G T A+VG SGSGKST+++++ DP +GEV + G + KL
Sbjct: 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDA 81
Query: 446 LKWIR-EKIGLVSQEPILFAT-SLRENIAYGKE---NATDQEIRTAIELANAAKFIDKLP 500
+R +G V Q L + EN+A E ++ A L A
Sbjct: 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAV------- 134
Query: 501 KGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM 560
GL + QLSGG++QR+A+ARA P +L DE T LD + + D L +
Sbjct: 135 -GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN 193
Query: 561 TSR--TTVVVAHRLTTIRNADLIAVVHQGKIVE 591
R T V+V H D + G++VE
Sbjct: 194 RERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-23
Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 28/226 (12%)
Query: 1063 LSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL----PKFKLSWLRQQM 1118
++P A+ G SGSGK+T+I LI PD G ++L+ L L ++++
Sbjct: 18 FTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRI 77
Query: 1119 GLVSQEPVLFNE-TIRTNIAYG------KQGGATEEEIIAATEASNAHNFISALPHGYET 1171
G V QE LF ++R N+ YG + + E +I G
Sbjct: 78 GYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELL--------------GIGH 123
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNR 1229
+G +LSGG+KQR+AI RA+L +P++LL+DE +ALD + + LER+
Sbjct: 124 LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGI 183
Query: 1230 TTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITDGAYAS 1274
+ V+H L + AD + V+++G +A G + D + +
Sbjct: 184 PILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLA 229
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-23
Identities = 78/240 (32%), Positives = 126/240 (52%), Gaps = 20/240 (8%)
Query: 1040 IELRCVSFKYP--TRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
I VS+ Y T + Q ++ GK A+VG++GSGKST+I I P +G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 1098 HVLLDNIELP-KFK---LSWLRQQMGLVSQ--EPVLFNETIRTNIAYG-KQGGATEEEII 1150
V +D+I + K K + +R+++G+V Q E LF +T+ I +G K +E+
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEV- 121
Query: 1151 AATEASNAHNFISALPHGYETNVGERG-VQLSGGQKQRIAIARAVLKNPKILLLDEATSA 1209
+ AH + L G+ +V + Q+SGGQ ++IAI + NP I++LDE T+
Sbjct: 122 ----KNYAHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175
Query: 1210 LDAESERVVQDALERVMV--NRTTVVVAHRLTTI-KNADIIAVVKNGVIAEQGSHDALMK 1266
LD +S+R V L+ + N+T ++V+H + + + AD + V+K G I Q S L K
Sbjct: 176 LDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235
|
Length = 286 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.7 bits (248), Expect = 5e-23
Identities = 73/249 (29%), Positives = 119/249 (47%), Gaps = 25/249 (10%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD--PDA- 431
I DV+ Y + G L AL+G SG GKST + + R D P
Sbjct: 6 ITSSDVHLFYGKF---EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62
Query: 432 --GEVLIDGIDI--KKLQLKWIREKIGLVSQEPILFATSLRENIAYG------KENAT-D 480
G V + G +I + +R+++G+V Q+P F S+ EN+ YG K+ A D
Sbjct: 63 ITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLD 122
Query: 481 QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEA 540
+ + T+++ A D++ L E LSGGQ+QR+ IAR + P ++LLDE
Sbjct: 123 EAVETSLK---QAAIWDEVKDHLH----ESALSLSGGQQQRVCIARVLAVKPDVILLDEP 175
Query: 541 TSALDAESERIVQDALVKIMTSRTTVVVAHRLTTI-RNADLIAVVHQGKIVEKGTHDELI 599
TSALD S +++ L+++ T ++V H + R +D A G ++E ++
Sbjct: 176 TSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235
Query: 600 KDPEGPYTQ 608
+P+ T+
Sbjct: 236 LNPKEKETE 244
|
Length = 252 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 6e-23
Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 30/217 (13%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI 1104
+SF Y + I +L L + +G+ +AL G++G+GK+T+ ++ SG +LL+
Sbjct: 5 ISFSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG- 61
Query: 1105 ELPKFKLSWLRQQMGLVSQEP--VLFNETIRTNIAYG-KQGGATEEEIIAATEASNAHNF 1161
K R+ +G V Q+ LF +++R + G K+ A E+ + + +
Sbjct: 62 --KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYAL 119
Query: 1162 ISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDA 1221
P LSGGQKQR+AIA A+L +L+ DE TS LD ++ V +
Sbjct: 120 KERHPL-----------SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGEL 168
Query: 1222 LERVMVNRTTVVV-----------AHRLTTIKNADII 1247
+ + V+V R+ + N I+
Sbjct: 169 IRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 6e-23
Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 10/220 (4%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+++ + YF + + + ++ +P+G +VGQ G GKS+++ + G+V
Sbjct: 1 VQVTNGYFSWG--SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 435 LIDGIDIKKLQLKWIREK----IGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELA 490
+ + + R + + +Q+P L ++ ENI +G Q + +
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDAC 117
Query: 491 NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE-SE 549
+ ID LP G T GE G LSGGQ+QRI +ARA+ +N I+ LD+ SALD S+
Sbjct: 118 SLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSD 177
Query: 550 RIVQDALVKIMT--SRTTVVVAHRLTTIRNADLIAVVHQG 587
++Q+ ++K + RT V+V H+L + +AD I + G
Sbjct: 178 HLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 6e-23
Identities = 71/242 (29%), Positives = 114/242 (47%), Gaps = 38/242 (15%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
I+L + Y A Q +L P G T L+G SG+GKS+++ ++ P +G +
Sbjct: 3 IQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 435 LIDG--IDIKKL----QLKWIREKIGLVSQEPILFA-TSLRENIAYGKEN----ATDQEI 483
I G D K ++ +R +G+V Q+ L+ +++EN+ + DQ +
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 484 RTAIELANA---AKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEA 540
A +L + D+ P LSGGQ+QR+AIARA++ P++LL DE
Sbjct: 120 ARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQRVAIARALMMEPQVLLFDEP 168
Query: 541 TSALDAESERIVQDALVKIM-----TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGT 594
T+ALD E + +V I+ T T V+V H + R A + + G IVE+G
Sbjct: 169 TAALDPE----ITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
Query: 595 HD 596
Sbjct: 225 AS 226
|
Length = 242 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 8e-23
Identities = 79/250 (31%), Positives = 131/250 (52%), Gaps = 29/250 (11%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLV 456
SL + G AL+G SG GKST++ ++ F P AG++++DG+D+ + + I ++
Sbjct: 39 SLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPINMM 96
Query: 457 SQEPILFA-TSLRENIAYG--KENATDQEIRTAIE----LANAAKFIDKLPKGLDTMAGE 509
Q LF ++ +NIA+G ++ EI + + L + +F + P
Sbjct: 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH-------- 148
Query: 510 HGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVV 567
QLSGGQ+QR+A+AR++ K PK+LLLDE ALD + +Q +V I+ T V+
Sbjct: 149 ---QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205
Query: 568 VAH-RLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ----LVRLQEG--SKEAE 620
V H + + A IA++++GK V+ G +E+ + P Y+ V + EG + E
Sbjct: 206 VTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLKERQE 265
Query: 621 DALATDADKL 630
D L D+ L
Sbjct: 266 DGLVIDSPGL 275
|
Length = 377 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 8e-23
Identities = 71/242 (29%), Positives = 110/242 (45%), Gaps = 34/242 (14%)
Query: 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD-- 1095
G I + + Y + +L L I +G+ +AL+G+SG GK+T++ I F
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 1096 SGHVLL---DNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAYG----KQGGA-TE 1146
+G + + D P K + + L+ Q LF + N+A+G K A
Sbjct: 61 TGRIAIADRDLTHAPPHK-----RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIA 115
Query: 1147 EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEA 1206
E + A + + + LP QLSGG +QRIAIARA+ P +LLLDE
Sbjct: 116 ERVADALKLVGLGDAAAHLPA-----------QLSGGMQQRIAIARAIAIEPDVLLLDEP 164
Query: 1207 TSALDAESERVVQD---ALERVMVNRTTVVVAH-RLTTIKNADIIAVVKNGVIAEQGSHD 1262
SALDA +++ AL + T + V H + + AD ++K+G +A G
Sbjct: 165 LSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQ 224
Query: 1263 AL 1264
AL
Sbjct: 225 AL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 9e-23
Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 11/187 (5%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL---PKFKLS 1112
Q+ ++ L I G+ V L G SGSGK+T++ LI G + + EL + +L
Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78
Query: 1113 WLRQQMGLVSQEPVLFNE-TIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYET 1171
LR+ +G + Q L T R N+ + + + A + A+ G
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMALE---LQPNLSYQEARERARAMLEAV--GLGD 133
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR-- 1229
++ LSGGQKQR+AIARA++ PK++L DE T+ALD++S R V + ++++ +
Sbjct: 134 HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGC 193
Query: 1230 TTVVVAH 1236
T ++V H
Sbjct: 194 TILIVTH 200
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 9e-23
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 63/220 (28%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+ELR + R+ V+ G SL V G AL+G++G+GKST++ ++ Y PD+GE+
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAK 494
L+DG + + FA S R+ G I
Sbjct: 58 LVDG--------------------KEVSFA-SPRDARRAG--------IAMV-------- 80
Query: 495 FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL-DAESERIVQ 553
QLS G++Q + IARA+ +N ++L+LDE T+AL AE ER+
Sbjct: 81 -----------------YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF- 122
Query: 554 DALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGKIV 590
+++ + ++ + ++HRL + AD + V+ G++V
Sbjct: 123 -KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 9e-23
Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 28/217 (12%)
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454
G S V G L+G +G+GK+T I ++ P +G + G D+ + + + +R +IG
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIG 76
Query: 455 LVSQEPIL-FATSLRENIA-----YGKENAT-DQEIRTAIELANAAKFIDKLPKGLDTMA 507
+V Q+ + + EN+ YG A + I ++ + D+L K
Sbjct: 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK------ 130
Query: 508 GEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVV 567
SGG ++R+ IAR+++ P++L LDE T LD ++ V + + K+ +
Sbjct: 131 -----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTI 185
Query: 568 VAHRLTT------IRNADLIAVVHQGKIVEKGTHDEL 598
+ LTT + D +A++ G+I+ +GT +EL
Sbjct: 186 L---LTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-22
Identities = 71/217 (32%), Positives = 117/217 (53%), Gaps = 18/217 (8%)
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ-- 1116
++ L+I G+ ++G SGSGKST++ L+ R +P G VL+D +++ K + LR+
Sbjct: 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR 104
Query: 1117 --QMGLVSQEPVLF-NETIRTNIAYGKQ--GGATEEEIIAATEASNAHNFISALPHGYET 1171
++ +V Q L + T+ N A+G + G EE A +A + H Y
Sbjct: 105 RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVG-LENYAHSYPD 163
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NR 1229
+LSGG +QR+ +ARA+ NP ILL+DEA SALD +QD L ++ R
Sbjct: 164 -------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQR 216
Query: 1230 TTVVVAHRL-TTIKNADIIAVVKNGVIAEQGSHDALM 1265
T V ++H L ++ D IA+++NG + + G+ D ++
Sbjct: 217 TIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-22
Identities = 69/221 (31%), Positives = 107/221 (48%), Gaps = 36/221 (16%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLR 1115
+++ LS+ G+ V L+G SG GK+T++ +I +G + ++ + L +
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITR--LPPQK 75
Query: 1116 QQMGLVSQEPVLF-NETIRTNIAYG--KQGGATEE------EIIAATEASNAHNFISALP 1166
+ G+V Q LF N T+ NIAYG +G E E++ +
Sbjct: 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPG-- 133
Query: 1167 HGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA---ESERVVQDALE 1223
QLSGGQ+QR+A+ARA+ +P +LLLDE SALDA E R L+
Sbjct: 134 ------------QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ 181
Query: 1224 RVMVNRTTVVVAH----RLTTIKNADIIAVVKNGVIAEQGS 1260
R + TT++V H L+ AD I V+ +GVI + G+
Sbjct: 182 R-RLGVTTIMVTHDQEEALSM---ADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 1e-22
Identities = 69/250 (27%), Positives = 123/250 (49%), Gaps = 19/250 (7%)
Query: 371 IEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD 430
++ +I++R V F Y Q+ ++ P A++G SG GKST++ + R D
Sbjct: 1 MDPKIKIRGVNFFYHKH---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIV 57
Query: 431 AG-----EVLIDGIDI--KKLQLKWIREKIGLVSQEPILFATSLRENIAYGKE---NATD 480
+G VL+D +I L + +R+++G+V Q+P F S+ +N+A+G
Sbjct: 58 SGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQ 117
Query: 481 QEIRTAIELA-NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDE 539
+ +E + A D++ L + G LSGGQ+QR+ IAR + P+++L+DE
Sbjct: 118 SRLDEVVEKSLRQAALWDEVKDNLH----KSGLALSGGQQQRLCIARVLAIEPEVILMDE 173
Query: 540 ATSALDAESERIVQDALVKIMTSRTTVVVAHRL-TTIRNADLIAVVHQGKIVEKGTHDEL 598
SALD S +++ + ++ + T +V H + R +D + G +VE G E+
Sbjct: 174 PCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233
Query: 599 IKDPEGPYTQ 608
P T+
Sbjct: 234 FSRPRDKRTE 243
|
Length = 251 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 17/237 (7%)
Query: 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA- 431
G I + + Y A + SL + +G AL+G+SG GK+T++ + F
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 432 -GEVLIDGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIAYGKENATDQEIRTAIEL 489
G + I D+ + + L+ Q LF + +N+A+G + A +
Sbjct: 61 TGRIAIADRDLTHAPPH--KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118
Query: 490 ANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESE 549
A+A K + GL A QLSGG +QRIAIARAI P +LLLDE SALDA
Sbjct: 119 ADALKLV-----GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIR 173
Query: 550 RIVQDALVKI---MTSRTTVVVAH-RLTTIRNADLIAVVHQGKIVEKGTHDELIKDP 602
+++ + + + T + V H + + AD ++ G++ G L P
Sbjct: 174 ANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 1e-22
Identities = 70/234 (29%), Positives = 98/234 (41%), Gaps = 50/234 (21%)
Query: 386 ARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL- 444
+ SL + SG T AL+G+SG GKST+ L+ P G V G + KL
Sbjct: 21 KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN 80
Query: 445 --QLKWIREKIGLVSQ-----------------EPILFATSLRENIAYGKENATDQEIRT 485
Q K R I +V Q EP+ SL + ++ R
Sbjct: 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSL---------DKAERLARA 131
Query: 486 -----AIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEA 540
A++L +DK P QLSGGQ QR+ +ARA+ PK+L+LDEA
Sbjct: 132 SEMLRAVDLD--DSVLDKRPP-----------QLSGGQLQRVCLARALAVEPKLLILDEA 178
Query: 541 TSALDAESERIVQDALVKIMTSRTT--VVVAHRLTTI-RNADLIAVVHQGKIVE 591
S LD + V L K+ T + + H L + R + V+ G+IVE
Sbjct: 179 VSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 1e-22
Identities = 68/247 (27%), Positives = 114/247 (46%), Gaps = 48/247 (19%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
I+L + Y A Q +L P G T L+G SG+GKS+++ ++ P +G +
Sbjct: 3 IQLNGINCFYGAH---QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 435 LIDG--------IDIKKLQLKWIREKIGLVSQEPILFA-TSLRENI--------AYGKEN 477
I G K ++ +R +G+V Q+ L+ ++++N+ K+
Sbjct: 60 NIAGNHFDFSKTPSDKAIRE--LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQ 117
Query: 478 ATDQ--EIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKIL 535
A + ++ + L + D+ P LSGGQ+QR+AIARA++ P++L
Sbjct: 118 ALARAEKLLERLRLKP---YADRFP-----------LHLSGGQQQRVAIARALMMEPQVL 163
Query: 536 LLDEATSALDAESERIVQDALVKIM-----TSRTTVVVAHRLTTIRN-ADLIAVVHQGKI 589
L DE T+ALD E + +V I+ T T V+V H + R A + + G I
Sbjct: 164 LFDEPTAALDPE----ITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHI 219
Query: 590 VEKGTHD 596
VE+G
Sbjct: 220 VEQGDAS 226
|
Length = 242 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (262), Expect = 2e-22
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 17/230 (7%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVI-ALIERFYDPDSG 1097
AI ++ F + ++ ++ L IP G VA+VG +G GK+++I A++ ++
Sbjct: 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETS 673
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASN 1157
V++ R + V Q +FN T+R NI +G E A + +
Sbjct: 674 SVVI-------------RGSVAYVPQVSWIFNATVRENILFGSD--FESERYWRAIDVTA 718
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
+ + LP T +GERGV +SGGQKQR+++ARAV N I + D+ SALDA
Sbjct: 719 LQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQ 778
Query: 1218 VQDA-LERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMK 1266
V D+ ++ + +T V+V ++L + D I +V G+I E+G+ L K
Sbjct: 779 VFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828
|
Length = 1495 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 2e-22
Identities = 76/238 (31%), Positives = 123/238 (51%), Gaps = 18/238 (7%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+E+ + FKY DV + SI G+ V+++G++GSGKST LI+ ++ G V
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEP--VLFNETIRTNIAYG--KQGGATEEEIIAATEA 1155
+D L + LR+++G+V Q P T+ ++A+G QG EE I EA
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 1156 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD---- 1211
A N + ++T R LSGGQKQR+A+A + P+I++LDE+TS LD
Sbjct: 125 LLAVNMLD-----FKTREPAR---LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176
Query: 1212 AESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITD 1269
E RV+ + E+ + T + + H L ++D I V+K G I ++ + L ++
Sbjct: 177 QEIMRVIHEIKEKYQL--TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232
|
Length = 277 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 2e-22
Identities = 71/251 (28%), Positives = 122/251 (48%), Gaps = 29/251 (11%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
+I+L ++ Y Q ++ L P G+T+ L+G SG+GKS+++ ++ P SG
Sbjct: 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 1099 VLLDNIELPKFKLS---------WLRQQMGLVSQEPVLF-NETIRTNI--AYGKQGGATE 1146
+ + F S LR+ +G+V Q+ L+ + T++ N+ A + G ++
Sbjct: 59 LNIAGNH---FDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSK 115
Query: 1147 EEIIAATEASNAHNFISALPHGYETNVGER-GVQLSGGQKQRIAIARAVLKNPKILLLDE 1205
++ A A L +R + LSGGQ+QR+AIARA++ P++LL DE
Sbjct: 116 DQ--ALARA------EKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDE 167
Query: 1206 ATSALDAE-SERVVQDALERVMVNRTTVVVAHRLTTI-KNADIIAVVKNGVIAEQGSHDA 1263
T+ALD E + ++V E T V+V H + K A + ++NG I EQG
Sbjct: 168 PTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
Query: 1264 LMKITDGAYAS 1274
+ A+ +
Sbjct: 228 FTEPQTEAFKN 238
|
Length = 242 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 2e-22
Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 36/219 (16%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIK---KLQLK 447
Q+ +L + G L G SGSGK+T+++L+ G + + G ++ + +L
Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78
Query: 448 WIREKIGLVSQEPILF-ATSLRENIAYGKENATDQEIRTAIELANA-------AKFIDKL 499
+R IG + Q L + R+N+ E + + A E A A +D
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYY 138
Query: 500 PKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKI 559
P LSGGQKQR+AIARA++ PK++L DE T+ALD++S R V V++
Sbjct: 139 PH-----------NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDV----VEL 183
Query: 560 MTSR------TTVVVAH--RLTTIRNADLIAVVHQGKIV 590
M T ++V H R+ + AD I + GK++
Sbjct: 184 MQKLAREQGCTILIVTHDNRILDV--ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 2e-22
Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 20/242 (8%)
Query: 375 IELRDVYFRY-PARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
I+ +V + Y P P E + S + G+ ALVG +GSGKST++ P +G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 433 EVLIDGIDIK----KLQLKWIREKIGLVSQ--EPILFATSLRENIAYGKEN--ATDQEIR 484
+ I G I LK +R+K+ LV Q E LF ++ +++ +G +N ++ E +
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 485 TAIELANAAKFIDKLPKGLDT-MAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSA 543
A K++ K+ GL + + +LSGGQ +R+AIA + P+IL LDE +
Sbjct: 123 EK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175
Query: 544 LDAESERIVQDALVKIMTSRTTVV-VAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601
LD E + + + TV+ V H + + AD + V+ GK+++ + E+ D
Sbjct: 176 LDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235
Query: 602 PE 603
E
Sbjct: 236 KE 237
|
Length = 287 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 2e-22
Identities = 72/252 (28%), Positives = 122/252 (48%), Gaps = 26/252 (10%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
I+++D+ F Y ++ G S+ + A++G SG GKST I + R + + G V
Sbjct: 8 IKVKDLSFYYNTSKAIE---GISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE-GPV 63
Query: 435 LIDG--------IDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENA---TDQEI 483
++G I ++ + +R +IG+V Q P F S+ EN+AYG + ++
Sbjct: 64 KVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADL 123
Query: 484 RTAIELA-NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATS 542
+E A A ++ L+ A LSGGQ+QR+ IARA+ PK+LL+DE S
Sbjct: 124 DEIVESALKGAALWQEVKDKLNKSA----LGLSGGQQQRLCIARALAIKPKVLLMDEPCS 179
Query: 543 ALDAESERIVQDALVKIMTSRTTVVVAHRL-TTIRNADLIAVVHQ-----GKIVEKGTHD 596
ALD + V++ + + + T +V H + R +D A G++VE G
Sbjct: 180 ALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTT 239
Query: 597 ELIKDPEGPYTQ 608
++ +P T+
Sbjct: 240 QIFSNPLDSRTR 251
|
Length = 259 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.7 bits (243), Expect = 2e-22
Identities = 70/219 (31%), Positives = 117/219 (53%), Gaps = 16/219 (7%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYD--PD---AGEVLIDGIDI--KKLQLKWI 449
+L +P A++G SG GKST I + P+ GE+ +G +I K+ L +
Sbjct: 32 NLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL 91
Query: 450 REKIGLVSQEPILFATSLRENIAYGKE---NATDQEIRTAIELA-NAAKFIDKLPKGLDT 505
R+ IG+V Q+ F S+ +N+AYG ++++ +E + D++ L T
Sbjct: 92 RKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHT 151
Query: 506 MAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTT 565
A LSGGQ+QR+ IARA+ NP +LL+DE TSALD S R +++ ++K+ T
Sbjct: 152 QA----LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTI 207
Query: 566 VVVAHRL-TTIRNADLIAVVHQGKIVEKGTHDELIKDPE 603
V+V H + R +D A + G++VE +++ +P+
Sbjct: 208 VIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPD 246
|
Length = 259 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 3e-22
Identities = 64/213 (30%), Positives = 109/213 (51%), Gaps = 12/213 (5%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLDNIEL-PKF 1109
Q +++ L IP+ + AL+G SG GKST++ + R D +G + +D ++
Sbjct: 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76
Query: 1110 KLSWLRQQMGLVSQEPVLFNETIRTNIAYG--KQGGATEEEIIAATEASNAHNFISALPH 1167
++ LR ++G+V Q+P F +I N+AYG QG ++ + E S +AL
Sbjct: 77 DVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRG---AALWD 133
Query: 1168 GYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV 1227
+ + LSGGQ+QR+ IAR + P ++L+DE TSALD + +++ +E +
Sbjct: 134 EVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK 193
Query: 1228 NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259
N T V+V H + + +D A G + E
Sbjct: 194 NYTIVIVTHSMQQARRISDRTAFFLMGELVEHD 226
|
Length = 249 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 3e-22
Identities = 75/225 (33%), Positives = 113/225 (50%), Gaps = 26/225 (11%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL--------P 1107
+ + L + G+ VA++G SGSGK+T++ I P++G + + +I +
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 1108 KFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYGKQ--GGATEEEIIAATEASNAHNFISA 1164
K + LRQ +G V Q LF + T+ NI G G +EE A A ++
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA- 135
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224
G ET+ R LSGGQ+QR+AIARA+ P+++L DE TSALD E +V + L
Sbjct: 136 ---GKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGEVLNT 186
Query: 1225 VMV----NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264
+ RT V+V H ++ ++ AD + G I EQG AL
Sbjct: 187 IRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231
|
Length = 250 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 3e-22
Identities = 69/207 (33%), Positives = 108/207 (52%), Gaps = 13/207 (6%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD----- 1093
I L+ V+ Y T V +N+ IP GK AL+G SG GKSTV+ + R D
Sbjct: 13 IISLQNVTISYGTFEAV---KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGC 69
Query: 1094 PDSGHVLLDNIEL--PKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIA 1151
G VL D +L P+ +R+++G+V Q+P F ++I NIA+G + ++
Sbjct: 70 SLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDE 129
Query: 1152 ATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
E S +A+ + + E G LSGGQ+QR+ IAR + P+++L+DE SALD
Sbjct: 130 LVERSLRK---AAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
Query: 1212 AESERVVQDALERVMVNRTTVVVAHRL 1238
S +++ + + N T V+V H +
Sbjct: 187 PISTLKIEETMHELKKNFTIVIVTHNM 213
|
Length = 269 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 3e-22
Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 23/223 (10%)
Query: 401 PSGTTAALVGQSGSGKSTVISLVERFYD--PD---AGEVLIDGIDI--KKLQLKWIREKI 453
P+ TA L+G SGSGKST++ + R D P+ G ++ +G +I + +R++I
Sbjct: 30 PNEITA-LIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEI 88
Query: 454 GLVSQEPILFATSLRENIAYG------KENAT-DQEIRTAIELANAAKFIDKLPKGLDTM 506
G+V Q+P F S+ EN+ YG K+ D+ + +++ A D++ L
Sbjct: 89 GMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLK---GASIWDEVKDRLHDS 145
Query: 507 AGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTV 566
A LSGGQ+QR+ IAR + +PKI+LLDE TSALD S +++ L+ + T +
Sbjct: 146 A----LGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTML 201
Query: 567 VVAHRLTTI-RNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
+V + R +D G ++E ++ +P+ T+
Sbjct: 202 LVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPKHKETE 244
|
Length = 252 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (242), Expect = 3e-22
Identities = 65/213 (30%), Positives = 107/213 (50%), Gaps = 8/213 (3%)
Query: 404 TTAALVGQSGSGKSTVISLVERFYD-----PDAGEVLIDGIDI--KKLQLKWIREKIGLV 456
+ AL+G SG GKST + + R D G V+ +G +I + +R KIG+V
Sbjct: 34 SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMV 93
Query: 457 SQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSG 516
Q P F S+ +NI+YG + ++ + E+ + L + + LSG
Sbjct: 94 FQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSG 153
Query: 517 GQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTI- 575
GQ+QR+ IAR + P ++L+DE TSALD S +++ ++ + S T ++V H +
Sbjct: 154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAG 213
Query: 576 RNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
R +D A G I E+ + DEL +P+ T+
Sbjct: 214 RISDRTAFFLNGCIEEESSTDELFFNPKNTKTE 246
|
Length = 254 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 4e-22
Identities = 71/239 (29%), Positives = 111/239 (46%), Gaps = 26/239 (10%)
Query: 1035 SVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP 1094
+E + VSF YP ++ SIP G AL+G +GSGKST+ LI P
Sbjct: 1 MKDNIVEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP 59
Query: 1095 DSGH---VLLDNIELPKFKLSW-LRQQMGLVSQEP--VLFNETIRTNIAYGKQG-GATEE 1147
D + +D I L K W +R+++G+V Q P T+ ++A+G +
Sbjct: 60 DDNPNSKITVDGITLTA-KTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRP 118
Query: 1148 EIIA----ATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLL 1203
E+I ++I + P LSGGQKQR+AIA + PKI++L
Sbjct: 119 EMIKIVRDVLADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIIL 167
Query: 1204 DEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGS 1260
DE+TS LD + + + ++ N T + + H + AD + V+ +G + QGS
Sbjct: 168 DESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGS 226
|
Length = 282 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (241), Expect = 4e-22
Identities = 68/215 (31%), Positives = 109/215 (50%), Gaps = 11/215 (5%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD--PD---SGHVLLD--NIEL 1106
+ + + L + AL+G SG GKST + + R D + +G + + NI
Sbjct: 16 NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYG 75
Query: 1107 PKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG-KQGGATEEEIIAATEASNAHNFISAL 1165
K L LR+++G+V Q+P F ++ N+AYG K G ++E+I + +A+
Sbjct: 76 SKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQ--AAI 133
Query: 1166 PHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV 1225
+ N+ SGGQ+QRI IARA+ PK++LLDE TSALD S +++ L +
Sbjct: 134 WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL 193
Query: 1226 MVNRTTVVVAHRLTTI-KNADIIAVVKNGVIAEQG 1259
T ++V H L + +D A + NG + E G
Sbjct: 194 KHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAG 228
|
Length = 251 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 4e-22
Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 32/225 (14%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
I SL +P+G AL+G +G GKST++ R P +G V + I L + +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 452 KIGLVSQEPIL-FATSLRENIAYGKE---------NATDQEIRT-AIELANAAKFIDKLP 500
++ L+ Q + ++RE +AYG+ +A D A+E
Sbjct: 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT---------- 126
Query: 501 KGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM 560
++ +A T LSGGQ+QR +A + ++ ++LLDE T+ LD Q L+++M
Sbjct: 127 -RINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH----QVELMRLM 181
Query: 561 -----TSRTTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELI 599
+T V V H L R D + V+ G ++ +GT +E++
Sbjct: 182 RELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 5e-22
Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 27/229 (11%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+ L + F Y +P + L+ G+ A+VG SGSGKST++ LI F P SG V
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAYGKQGGA--TEEE---IIAAT 1153
L++ +++ + + + ++ QE LF T+ N+ G G T E+ I A
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 1154 EASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAE 1213
LP +LSGG++QR+A+AR ++++ +LLLDE +ALD
Sbjct: 114 ARVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPA 162
Query: 1214 SERVVQDALERVMVNR--TTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259
+ D + + T ++V H+ K A + + NG IA QG
Sbjct: 163 LRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 5e-22
Identities = 78/256 (30%), Positives = 118/256 (46%), Gaps = 38/256 (14%)
Query: 375 IELRDVYFRYP------ARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD 428
+E+RDV Y A+ + SL + G T L+G+SG GKST+ L+
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 429 PDAGEVLIDGIDIKKL---QLKWIREKIGLVSQEPILFAT---SLRENIAYGKENATD-- 480
P G V G D+ +L Q + R + LV Q+ ++R+ I + T
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLD 122
Query: 481 ---QEIRTAIELANA----AKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPK 533
Q+ R A EL + ++ DKLP+ QLSGGQ QRI IARA+ PK
Sbjct: 123 ESEQKARIA-ELLDMVGLRSEDADKLPR-----------QLSGGQLQRINIARALAVKPK 170
Query: 534 ILLLDEATSALDAESERIVQDALVKIMTSRTT--VVVAHRLTTI-RNADLIAVVHQGKIV 590
+++LDEA S LD + ++ + L K+ + T + + H L + +AV+ +G+IV
Sbjct: 171 LIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230
Query: 591 E--KGTHDELIKDPEG 604
E K P G
Sbjct: 231 EECDVAQLLSFKHPAG 246
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 6e-22
Identities = 69/239 (28%), Positives = 122/239 (51%), Gaps = 24/239 (10%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+ ++ RY R V G SL V G L+G +G+GK+T ++ PD+G++
Sbjct: 1 LRAENLSKRYGKRKVVN---GVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI 57
Query: 435 LIDGIDIKKLQL-KWIREKIGLVSQEPILFAT-SLRENIAYGKENATD--QEIRTAIELA 490
L+DG DI KL + K R IG + QE +F ++ ENI E +E +E
Sbjct: 58 LLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLE-- 115
Query: 491 NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER 550
+ +++ + + + LSGG+++R+ IARA+ NPK LLLDE + +D + +
Sbjct: 116 ---ELLEEF--HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQ 170
Query: 551 IVQDALVKIMTSRTTVVVAHRLT------TIRNADLIAVVHQGKIVEKGTHDELIKDPE 603
+Q ++KI+ R V+ +T T+ D ++++GK++ +GT +E+ +
Sbjct: 171 DIQ-KIIKILKDRGIGVL---ITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (240), Expect = 6e-22
Identities = 71/222 (31%), Positives = 117/222 (52%), Gaps = 30/222 (13%)
Query: 407 ALVGQSGSGKSTVISLVERFYD--PD---AGEVLI--DGIDIKKLQLKWI--REKIGLVS 457
AL+G SG GKST + R +D P GE+++ D ++I ++ I R +I +V
Sbjct: 46 ALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVF 105
Query: 458 QEPILFATSLRENIAYG-------KENATDQEIRTAIELANAA---KFIDKLPKGLDTMA 507
Q+P F S+ EN+AYG + + ++ + A L NAA + D+L
Sbjct: 106 QKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENA--LRNAALWDEVKDRL-------- 155
Query: 508 GEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVV 567
G+ LSGGQ+QR+ IARA+ +P+ILL DE TSALD + +++ + + T ++
Sbjct: 156 GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILI 215
Query: 568 VAHRL-TTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
V H + R +D A ++ G+++E G D + P+ T+
Sbjct: 216 VTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIKPKNKQTE 257
|
Length = 265 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 7e-22
Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 12/192 (6%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD--PDS---GHVLLD--NIELPK 1108
++ +SIP + AL+G SG GKST++ R D P G +L + NI
Sbjct: 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79
Query: 1109 FKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ--GGATEEEIIAATEASNAHNFISALP 1166
+ LR+++G+V Q P F ++I N+AYG + G ++ + E S +AL
Sbjct: 80 ADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKG---AALW 136
Query: 1167 HGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM 1226
+ + + + LSGGQ+QR+ IAR + NP+++L+DE SALD + ++D +E +
Sbjct: 137 DEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK 196
Query: 1227 VNRTTVVVAHRL 1238
T ++V H +
Sbjct: 197 KEYTVIIVTHNM 208
|
Length = 253 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 7e-22
Identities = 64/229 (27%), Positives = 116/229 (50%), Gaps = 6/229 (2%)
Query: 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
G + ++ ++ KY T + N+ SI G+ V L+G +GSGKST+++ R + + G
Sbjct: 1 GQMTVKDLTAKY-TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-G 58
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNI-AYGKQGGATEEEIIAATEAS 1156
+ +D + L R+ G++ Q+ +F+ T R N+ YGK ++EEI E
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKW---SDEEIWKVAEEV 115
Query: 1157 NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER 1216
+ I P + + + G LS G KQ + +AR+VL KILLLDE ++ LD + +
Sbjct: 116 GLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQ 175
Query: 1217 VVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 1265
V++ L++ + T ++ HR+ + V++ + + S L+
Sbjct: 176 VIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL 224
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 7e-22
Identities = 64/238 (26%), Positives = 122/238 (51%), Gaps = 18/238 (7%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+++ ++ + Y G ++++ G A++G +G+GKST+ + P +G +
Sbjct: 6 LKVEELNYNYSDGTHA--LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 435 LIDG--IDIKKLQLKWIREKIGLVSQEP--ILFATSLRENIAYGKENAT--DQEIRTAIE 488
L DG ID + L +RE +G+V Q+P LF+ S+ +++++G N + E+R ++
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 489 LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
A I+ L K T LS GQK+R+AIA ++ PK+L+LDE T+ LD
Sbjct: 124 NALKRTGIEHL-KDKPTHC------LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
Query: 549 ERIVQDALVKIMTSR--TTVVVAHRLTTIR-NADLIAVVHQGKIVEKGTHDELIKDPE 603
+ LV++ T ++ H + + D + V+ +G+++ +G E+ + E
Sbjct: 177 VSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 234
|
Length = 283 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (240), Expect = 8e-22
Identities = 79/250 (31%), Positives = 120/250 (48%), Gaps = 43/250 (17%)
Query: 398 LHVPSGTTAALVGQSGSGKSTVISLVERFYD--PDA---GEVLIDGIDIKKLQLKWI--R 450
L +P+ A +G SG GKST++ R D P A G +L +I Q+ + R
Sbjct: 41 LKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100
Query: 451 EKIGLVSQEPILFATSLRENIAYG-KENATDQEIRTAIE--LANAA---KFIDKLPKGLD 504
++G+V Q P F S+ ENIA+ + N + +E L AA + DKL
Sbjct: 101 RQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLK---- 156
Query: 505 TMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRT 564
E GT LSGGQ+QR+ IARAI P +LL+DE SALD S R V++ +++ T
Sbjct: 157 ----EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYT 212
Query: 565 TVVVAHRLTTI-RNADLIAVVH---------QGKIVEKGTHDELIKDPEGPYTQLVRLQE 614
++V H + R AD A + +GK+VE +++ P+
Sbjct: 213 IIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQ----------- 261
Query: 615 GSKEAEDALA 624
+KEA + ++
Sbjct: 262 -TKEAREYIS 270
|
Length = 274 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (240), Expect = 8e-22
Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 10/183 (5%)
Query: 1063 LSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG-------HVLLDNIELPKFKLSWLR 1115
L IP+ K +A +G SG GKST++ R D G NI + LR
Sbjct: 41 LKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100
Query: 1116 QQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGE 1175
+Q+G+V Q P F ++I NIA+ + + + E S +A+ + + E
Sbjct: 101 RQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRR---AAIWEEVKDKLKE 157
Query: 1176 RGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVA 1235
+G LSGGQ+QR+ IARA+ P +LL+DE SALD S R V++ + T ++V
Sbjct: 158 KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVT 217
Query: 1236 HRL 1238
H +
Sbjct: 218 HNM 220
|
Length = 274 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 1e-21
Identities = 57/194 (29%), Positives = 99/194 (51%), Gaps = 16/194 (8%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD-----SGHVLLDNIEL-- 1106
+ + + + K AL+G SGSGKST + + R D +G +L I++
Sbjct: 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91
Query: 1107 PKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG-KQGGATEEEI---IAATEASNAHNFI 1162
+ + +R+ +G+V Q P F ++I NI + ++ G ++++ I T A
Sbjct: 92 KEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQA---- 147
Query: 1163 SALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDAL 1222
AL + ++ + + LSGGQ+QR+ IARA+ P ILL+DE SALD S +++ +
Sbjct: 148 -ALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETM 206
Query: 1223 ERVMVNRTTVVVAH 1236
+ N T ++V H
Sbjct: 207 FELKKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.8 bits (238), Expect = 1e-21
Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 11/191 (5%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLDNIEL--PK 1108
Q +N+ + IP AL+G SG GKST I + R D G V ++ ++ P
Sbjct: 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85
Query: 1109 FKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGATEEEIIAATEASNAHNFISALPH 1167
+ LR+ +G+V Q+P F +I N+AYG + GA ++++ E + +AL
Sbjct: 86 VDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRS---AALWD 142
Query: 1168 GYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV 1227
+ + LSGGQ+QR+ IAR + PKI+L DE TSALD S ++D + +
Sbjct: 143 ETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK 202
Query: 1228 NRTTVVVAHRL 1238
+ T V+V H +
Sbjct: 203 DYTIVIVTHNM 213
|
Length = 258 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 1e-21
Identities = 71/243 (29%), Positives = 119/243 (48%), Gaps = 35/243 (14%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
+I+L ++ Y Q ++ L P G+T+ L+G SG+GKS+++ ++ P SG
Sbjct: 2 SIQLNGINCFYGAH---QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 1099 VLLDNIELPKFKLS---------WLRQQMGLVSQEPVLF-NETIRTNI--AYGKQGGATE 1146
+ NI F S LR+ +G+V Q+ L+ + T++ N+ A + G ++
Sbjct: 59 L---NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSK 115
Query: 1147 EEIIAATEASNAH----NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILL 1202
++ +A E + P + LSGGQ+QR+AIARA++ P++LL
Sbjct: 116 DQALARAEKLLERLRLKPYADRFP-----------LHLSGGQQQRVAIARALMMEPQVLL 164
Query: 1203 LDEATSALDAE-SERVVQDALERVMVNRTTVVVAHRLTTI-KNADIIAVVKNGVIAEQGS 1260
DE T+ALD E + ++V E T V+V H + K A + ++NG I EQG
Sbjct: 165 FDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
Query: 1261 HDA 1263
Sbjct: 225 ASC 227
|
Length = 242 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 1e-21
Identities = 77/242 (31%), Positives = 115/242 (47%), Gaps = 42/242 (17%)
Query: 375 IELRDVYFRY---PARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA 431
++L D+ + Y P R F L V G A++G SG+GKST+++L+ F P +
Sbjct: 2 LKLTDITWLYHHLPMR--------FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS 53
Query: 432 GEVLIDGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIAYG-----KENATDQEIRT 485
G + ++G D R + ++ QE LF+ ++ +NI G K NA +E
Sbjct: 54 GSLTLNGQDHTTTPPS--RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLH 111
Query: 486 AI-ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
AI + +LP QLSGGQ+QR+A+AR +++ ILLLDE SAL
Sbjct: 112 AIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCLVREQPILLLDEPFSAL 160
Query: 545 D----AESERIVQDALVKIMTSR--TTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDE 597
D E +V + R T ++V+H L R A VV G+I G DE
Sbjct: 161 DPALRQEMLTLVSQ----VCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDE 216
Query: 598 LI 599
L+
Sbjct: 217 LL 218
|
Length = 232 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 1e-21
Identities = 65/240 (27%), Positives = 125/240 (52%), Gaps = 30/240 (12%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
I + +V Y + + SL +P G +++G +G+GKST++S++ R D+GE+
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQE-PILFATSLRENIAY-------GKENATDQE-IRT 485
IDG+++ K + +K+ ++ QE I ++R+ + + G+ D+ I
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 486 AIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALD 545
AIE + L+ ++ + +LSGGQ+QR IA + ++ +LLDE + LD
Sbjct: 119 AIEYLH-----------LEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167
Query: 546 -AESERIVQDALVKIMT---SRTTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELIK 600
S +I++ +++ + +T VVV H + +D I + GK+V++G+ DE+I+
Sbjct: 168 MKHSVQIMK--ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.0 bits (236), Expect = 2e-21
Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 12/192 (6%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLD--NIELPK 1108
Q ++ L I K AL+G SG GKST + + R D G VLLD NI
Sbjct: 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77
Query: 1109 FKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ--GGATEEEIIAATEASNAHNFISALP 1166
+ LR+++G+V Q+P F +I N+AYG + G ++E+ E + +AL
Sbjct: 78 VDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKK---AALW 134
Query: 1167 HGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM 1226
+ ++ + ++LSGGQ+QR+ IAR + P ++L+DE TSALD S ++D + +
Sbjct: 135 DEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK 194
Query: 1227 VNRTTVVVAHRL 1238
T V+V H +
Sbjct: 195 KEYTIVIVTHNM 206
|
Length = 251 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 2e-21
Identities = 68/190 (35%), Positives = 104/190 (54%), Gaps = 31/190 (16%)
Query: 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL---PKFKLSWLRQ 1116
++ L+I G+ AL+G SG GKST++ ++ F P +G ++LD ++L P ++ +
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ-----R 91
Query: 1117 QMGLVSQEPVLF-NETIRTNIAYG-KQGGATEEEIIAATEAS----NAHNFISALPHGYE 1170
+ ++ Q LF + T+ NIA+G KQ + EI + + F PH
Sbjct: 92 PINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH--- 148
Query: 1171 TNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAE-SERV---VQDALERVM 1226
QLSGGQ+QR+A+AR++ K PK+LLLDE ALD + +R+ V D LERV
Sbjct: 149 --------QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG 200
Query: 1227 VNRTTVVVAH 1236
V T V+V H
Sbjct: 201 V--TCVMVTH 208
|
Length = 377 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (236), Expect = 2e-21
Identities = 72/261 (27%), Positives = 128/261 (49%), Gaps = 28/261 (10%)
Query: 368 LEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFY 427
+ K+ I++ ++ F Y + +I G S+ + A++G SG GKST + + R
Sbjct: 1 MSKLIPAIKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN 57
Query: 428 DPDAGEVLIDG--------IDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENA- 478
+ + EV ++G I +++ L +R ++ +V +P LF S+ +N+AYG +
Sbjct: 58 ELE-SEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVG 116
Query: 479 --TDQEIRTAIELA-NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKIL 535
EI +E A A D++ + A + LSGGQ+QR+ IARA+ PK+L
Sbjct: 117 WRPKLEIDDIVESALKDADLWDEIKHKIHKSALD----LSGGQQQRLCIARALAVKPKVL 172
Query: 536 LLDEATSALDAESERIVQDAL--VKIMTSRTTVVVAHRLTTI-RNADLIAVVHQ-----G 587
L+DE LD + V+ + +++ + T V+V+H L + R +D A G
Sbjct: 173 LMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIG 232
Query: 588 KIVEKGTHDELIKDPEGPYTQ 608
++VE G ++ P T+
Sbjct: 233 QLVEFGLTKKIFNSPHDSRTR 253
|
Length = 261 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 3e-21
Identities = 72/215 (33%), Positives = 111/215 (51%), Gaps = 28/215 (13%)
Query: 1063 LSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVS 1122
L++ G+ VA++G SG+GKST++ LI F P SG + L+ + S R+ + ++
Sbjct: 20 LTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSMLF 77
Query: 1123 QEPVLFNE-TIRTNIAYG-----KQGGATEEEIIAATEASNAHNFISALPHGYETNVGER 1176
QE LF+ T+ NI G K A E++ A + ++ LP
Sbjct: 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG--------- 128
Query: 1177 GVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR--TTVVV 1234
QLSGGQ+QR+A+AR +++ ILLLDE SALD + + + +V R T ++V
Sbjct: 129 --QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMV 186
Query: 1235 AHRLTTIKNADIIA----VVKNGVIAEQGSHDALM 1265
+H L ++A IA VV +G IA G D L+
Sbjct: 187 SHSL---EDAARIAPRSLVVADGRIAWDGPTDELL 218
|
Length = 232 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 3e-21
Identities = 61/224 (27%), Positives = 112/224 (50%), Gaps = 21/224 (9%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL-KWI 449
++ SL V SG L+G +G+GK+T ++ PD+G++L+D DI KL + K
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 450 REKIGLVSQEPILF-ATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAG 508
R IG + QE +F ++ +NI E +++++ A +++ + +
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLE-IREKDLKKAERKEELDALLEEF--HITHLRD 134
Query: 509 EHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD--ALVKIMTSRTTV 566
LSGG+++R+ IARA+ NPK +LLDE + +D + V D ++K + R
Sbjct: 135 SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA---VIDIQRIIKHLKDRGIG 191
Query: 567 VVAHRLTTIRN-------ADLIAVVHQGKIVEKGTHDELIKDPE 603
V L T N D ++ GK++ +G+ +E++ + +
Sbjct: 192 V----LITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNED 231
|
Length = 243 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 3e-21
Identities = 59/243 (24%), Positives = 113/243 (46%), Gaps = 29/243 (11%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
I ++ + R ++ G SL + G A++G +G+GKST++ + PD+GEV
Sbjct: 2 IRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQE-PILFATSLRE-----NIAYGKENATDQEIRTAIE 488
++G+ + + + ++ Q + F +++E I + +++ R A +
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118
Query: 489 LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR------AILKNPKILLLDEATS 542
A L +AG LSGG++QR+ +AR + + + L LDE TS
Sbjct: 119 ALAAT--------DLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTS 170
Query: 543 ALD-AESERIVQDALVKIMTSR--TTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDEL 598
ALD A ++ L + + + V H L + AD I ++HQG+++ G+ ++
Sbjct: 171 ALDIAHQHHTLR--LARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228
Query: 599 IKD 601
+ D
Sbjct: 229 LTD 231
|
Length = 259 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.6 bits (235), Expect = 3e-21
Identities = 77/275 (28%), Positives = 133/275 (48%), Gaps = 29/275 (10%)
Query: 348 MFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAA 407
+ + ++ K +I P+ E E +E++D+ Y + V S+ + A
Sbjct: 1 VVQMVREKIEIAPF------PEAKEHILEVKDLSIYYGEKRAVN---DISMDIEKHAVTA 51
Query: 408 LVGQSGSGKSTVISLVERFYD--PDA---GEVLIDGIDI--KKLQLKWIREKIGLVSQEP 460
L+G SG GKST + + R D P A GE+L +G++I + + +R +IG+V Q+P
Sbjct: 52 LIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111
Query: 461 ILFATSLRENIAYGKENATDQEIRTAI------ELANAAKFIDKLPKGLDTMAGEHGTQL 514
F S+ NI + + A E R ++ E A D++ L + A L
Sbjct: 112 NPFPKSIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSSA----LSL 165
Query: 515 SGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRL-T 573
SGGQ+QR+ IAR + P +LLLDE SALD S +++ + ++ + ++V H +
Sbjct: 166 SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQ 225
Query: 574 TIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
+R +D A G +VE +++ P+ T+
Sbjct: 226 ALRVSDRTAFFLNGDLVEYDQTEQIFTSPKQQKTE 260
|
Length = 268 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 4e-21
Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 22/205 (10%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS-----GHVLLDNIEL-- 1106
D + + + IP AL+G SG GKST + + R D G V LD ++
Sbjct: 57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116
Query: 1107 PKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG--KQG-----------GATEEEIIAAT 1153
L LR+++G+V Q P F ++IR NI+YG K G G +++ A
Sbjct: 117 DGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKD--AED 174
Query: 1154 EASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAE 1213
E +AL + + + LSGGQ+QR+ IAR + +P+++L+DE SALD
Sbjct: 175 ELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPI 234
Query: 1214 SERVVQDALERVMVNRTTVVVAHRL 1238
+ ++D +E + T VVV H +
Sbjct: 235 ATSKIEDLIEELAEEYTVVVVTHNM 259
|
Length = 305 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 4e-21
Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 17/233 (7%)
Query: 1039 AIELRCVSFKYP--TRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS 1096
I L+ VS+ Y T + + ++ L+I G A +G +GSGKST++ L+ + P
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 1097 GHVLLDNIEL---PKFK-LSWLRQQMGLVSQ--EPVLFNETIRTNIAYGKQG-GATEEEI 1149
G V +D+ + K K + +R+++GLV Q E LF ET+ ++A+G Q G ++EE
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA 121
Query: 1150 IAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSA 1209
A A IS E+ + +LSGGQ +R+AIA + PKIL+LDE T+
Sbjct: 122 EALAREKLALVGIS------ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAG 175
Query: 1210 LDAESERVVQDALERVMVNRTTVV-VAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
LD + + + +++ + T+V V H + + N AD + V++ G + G
Sbjct: 176 LDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 4e-21
Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 20/210 (9%)
Query: 1063 LSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL-----PKFKLSWLRQQ 1117
+SIPSG VA++G +GSGKST++ + P SG V + + K KL LR++
Sbjct: 28 VSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK-KLKPLRKK 86
Query: 1118 MGLVSQ--EPVLFNETIRTNIAYGKQG-GATEEEIIAATEASNAHNFISALPHGYETNVG 1174
+G+V Q E LF ET+ +I +G G +EE+ A +A + G +
Sbjct: 87 VGIVFQFPEHQLFEETVEKDICFGPMNFGVSEED--AKQKAREMIELV-----GLPEELL 139
Query: 1175 ERG-VQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTT 1231
R +LSGGQ +R+AIA + P++L+LDE T+ LD + + + + ++ TT
Sbjct: 140 ARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTT 199
Query: 1232 VVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
V+V H + AD I V+ G + QG+
Sbjct: 200 VLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
|
Length = 290 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 4e-21
Identities = 70/246 (28%), Positives = 122/246 (49%), Gaps = 41/246 (16%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
I + VS Y T+ + ++ L IP G +++G +G+GKST+++++ R DSG +
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 1100 LLDNIELPKF-------KLSWLRQQMGLVSQEPVLFNETIRTNIAYGK----QGGATEEE 1148
+D +EL KLS L+Q+ + S T+R + +G+ QG T+E+
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINS------RLTVRDLVGFGRFPYSQGRLTKED 112
Query: 1149 IIAATEASNAHNFISALPHGYETNVGERGV-QLSGGQKQRIAIARAVLKNPKILLLDEAT 1207
EA + ++ +R + +LSGGQ+QR IA + ++ +LLDE
Sbjct: 113 RRIINEAIEYLHL---------EDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163
Query: 1208 SALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-----ADIIAVVKNGVIAEQGS 1260
+ LD + + L R+ + +T VVV H + N +D I +KNG + +QGS
Sbjct: 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDI----NFASCYSDHIVALKNGKVVKQGS 219
Query: 1261 HDALMK 1266
D +++
Sbjct: 220 PDEIIQ 225
|
Length = 252 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 4e-21
Identities = 70/253 (27%), Positives = 113/253 (44%), Gaps = 45/253 (17%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+E R++ R R + SL + G A++G +G+GKST++ + PD+GEV
Sbjct: 3 LEARNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 435 LIDGIDI---KKLQLKWIREKIGLVSQEPIL-FATSLRENIAYG------KENATDQEIR 484
++G + +L R ++ Q L F ++ E +A G D +
Sbjct: 60 RLNGRPLADWSPAELARRR---AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVA 116
Query: 485 TAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAIL------KNPKILLLD 538
A+ L +AG QLSGG++QR+ +AR + P+ LLLD
Sbjct: 117 AALAQV-----------DLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLD 165
Query: 539 EATSALD-AESERIVQDALVKIMTSR---TTVVVAHRLT-TIRNADLIAVVHQGKIVEKG 593
E TSALD A +++ L + + +VV H L R AD I ++HQG++V G
Sbjct: 166 EPTSALDLAHQHHVLR--LARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADG 223
Query: 594 T-----HDELIKD 601
T E ++
Sbjct: 224 TPAEVLTPETLRR 236
|
Length = 258 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 5e-21
Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 18/215 (8%)
Query: 407 ALVGQSGSGKSTVISLVERFYD-----PDAGEVLIDGIDI--KKLQLKWIREKIGLVSQE 459
A++G SG GKST I + R + G++L +I K ++ +R +G+V Q+
Sbjct: 54 AIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQK 113
Query: 460 PILFATSLRENIAYGKE--NATDQEIRTAI---ELANAAKFIDKLPKGLDTMAGEHGTQL 514
P F S+ +N+ YG + D++ I L AA + D+L L A +G L
Sbjct: 114 PNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-DELKDRLHDNA--YG--L 168
Query: 515 SGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRL-T 573
SGGQ+QR+ IAR + P ++L+DE TSALD S V++ + ++ + ++V H +
Sbjct: 169 SGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQ 228
Query: 574 TIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
R +D A G + E D++ +P T+
Sbjct: 229 AARISDKTAFFLNGYVNEYDDTDKIFSNPSDKRTE 263
|
Length = 271 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 6e-21
Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 24/216 (11%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
I G + P G+ L+G +GSGKST++ L+ PDAG V + G+D+ L +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 452 KIGLVSQE-PILFATSLRENIAYGK---------ENATDQEI-RTAIELANAAKFIDKLP 500
++ LV Q+ ++R+ +A G+ ++ D + A+ + D+
Sbjct: 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-- 133
Query: 501 KGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM 560
+ T LSGG++QR+ +ARA+ + PK+LLLDE T+ LD ++ + ++
Sbjct: 134 -DMST--------LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELA 184
Query: 561 TSRTTVVVA-HRLT-TIRNADLIAVVHQGKIVEKGT 594
+ TVV A H L D + V+ G++V G
Sbjct: 185 ATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 7e-21
Identities = 68/236 (28%), Positives = 104/236 (44%), Gaps = 44/236 (18%)
Query: 403 GTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL---------KWIREKI 453
G +VG+SGSGKST++ + PD G +L+L + +R +
Sbjct: 29 GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEW 88
Query: 454 GLVSQEPI----------------LFATSLRENIAYGKENATDQEIRTAIELANAAKFID 497
G V Q P L A R YG AT Q+ +E+ ID
Sbjct: 89 GFVHQNPRDGLRMRVSAGANIGERLMAIGARH---YGNIRATAQDWLEEVEIDPTR--ID 143
Query: 498 KLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALV 557
LP SGG +QR+ IAR ++ P+++ +DE T LD + + D L
Sbjct: 144 DLP-----------RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLR 192
Query: 558 KIMTSR--TTVVVAHRLTTIR-NADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610
++ ++V H L R A + V+ QG++VE G D+++ DP+ PYTQL+
Sbjct: 193 GLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLL 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 8e-21
Identities = 59/227 (25%), Positives = 110/227 (48%), Gaps = 25/227 (11%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+E+ +V R+ V S V G L+G +G+GK+T I ++ PD+GEV
Sbjct: 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTA----IELA 490
L DG K L + R +IG + +E L Y K DQ + A ++
Sbjct: 58 LFDG---KPLDIA-ARNRIGYLPEERGL----------YPKMKVIDQLVYLAQLKGLKKE 103
Query: 491 NAAKFIDKLPKGLDTMAGEHGT--QLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
A + ID+ + L+ + +LS G +Q++ A++ +P++L+LDE S LD +
Sbjct: 104 EARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163
Query: 549 ERIVQDALVKIMTSRTTVV-VAHRLTTI-RNADLIAVVHQGKIVEKG 593
+++D + ++ + TV+ H++ + D + ++++G+ V G
Sbjct: 164 VELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (231), Expect = 9e-21
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 13/221 (5%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERF---YDPD---SGHVLLDNIELP 1107
D I +++ + IP+ ++G SGSGKST++ ++ R YD G VL ++
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81
Query: 1108 KFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAY--GKQGGATEEEIIAATEASNAHNFISA 1164
+ LR+++G+V Q+P F +I NIAY G + EI E
Sbjct: 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRK---VG 138
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224
L + QLSGGQ+QR+ IARA+ PK+LL+DE TS +D + + ++ +
Sbjct: 139 LWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE 198
Query: 1225 VMVNRTTVVVAHRLTTI-KNADIIAVVKNGVIAEQGSHDAL 1264
+ V+V+H + + AD +A + NG + E GS + +
Sbjct: 199 LKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
Length = 257 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 1e-20
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 29/217 (13%)
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454
G + V G +G +G+GK+T I ++ P +G + G D+ + + + +R IG
Sbjct: 11 GVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIG 69
Query: 455 LVSQEPILF-ATSLRENIA-----YG-KENATDQEIRTAIELANAAKFIDKLPKGLDTMA 507
+V Q + + REN+ YG ++ ++ +EL + D+
Sbjct: 70 IVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG------ 123
Query: 508 GEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVV 567
SGG ++R+ IA +++ P +L LDE T+ LD + R + D + + T++
Sbjct: 124 -----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178
Query: 568 VAHRLTT--IRNADL----IAVVHQGKIVEKGTHDEL 598
LTT + AD IA++ G+I+ +GT +EL
Sbjct: 179 ----LTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 1e-20
Identities = 62/206 (30%), Positives = 106/206 (51%), Gaps = 14/206 (6%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IEL++V R + I S V G A+VG +G+GK+T++SL+ + P +G+V
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 435 LIDGIDIKKLQLKW-IREKIGLVS---QEPILFATSLRENIAYGKENATD--QEIRTAIE 488
+ G K + + +R++IGLVS E ++R+ + G + QE TA +
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 489 LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
LA A ++ L G +A LS G+++R+ IARA++K+P++L+LDE LD +
Sbjct: 149 LAAAQWLLELL--GAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIA 206
Query: 549 ERIVQDALVKIMTSR---TTVVVAHR 571
+ + L ++ S + V H
Sbjct: 207 REQLLNRLEELAASPGAPALLFVTHH 232
|
Length = 257 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 2e-20
Identities = 68/213 (31%), Positives = 106/213 (49%), Gaps = 14/213 (6%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS---GHVLLDNIELPKFKLS 1112
Q ++ + I K AL+G SG GKST + R D + G V ++ ++ +
Sbjct: 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75
Query: 1113 WLRQQMGLVSQEPVLFNETIRTNIAY-----GKQGGATEEEIIAATEASNAHNFISALPH 1167
LR+ +G+V Q+P +F ++I NI+Y G EEE + F
Sbjct: 76 ALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLF-----E 130
Query: 1168 GYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV 1227
+ + + + LSGGQ+QR+ IARA+ PK+LLLDE TSALD S V+++ L+ +
Sbjct: 131 EVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH 190
Query: 1228 NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259
N + ++V H + K AD A G + E G
Sbjct: 191 NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFG 223
|
Length = 246 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 2e-20
Identities = 66/203 (32%), Positives = 105/203 (51%), Gaps = 26/203 (12%)
Query: 1054 DVQIF-------RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-----DSGHVLL 1101
DV +F ++ L IP A +G SG GKST + + R D +G + L
Sbjct: 24 DVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITL 83
Query: 1102 D--NIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG------KQGGATEEEIIAAT 1153
D +I P+ + LR ++G+V Q+P F ++I N+AYG + A +EI+
Sbjct: 84 DGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIV--- 140
Query: 1154 EASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAE 1213
E S + L + + E G LSGGQ+QR+ IARA+ +P+++L+DE SALD
Sbjct: 141 ETSLRK---AGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPI 197
Query: 1214 SERVVQDALERVMVNRTTVVVAH 1236
+ V++ ++ + N T V+V H
Sbjct: 198 ATAKVEELIDELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 2e-20
Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 16/226 (7%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+++R ++ Y + +L L++ G+ L+G +G+GK+T + ++ P SG
Sbjct: 1 LQIRNLTKTYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIA-YGKQGGATEEEIIAATEASN 1157
++ + + RQ +G Q LF+E T+R ++ Y + G + EI
Sbjct: 60 YINGYSI-RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----E 113
Query: 1158 AHNFISA--LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE 1215
+ L LSGG K+++++A A++ P +LLLDE TS LD S
Sbjct: 114 VELLLRVLGLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASR 169
Query: 1216 RVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
R + D + V R+ ++ H + + D IA++ +G + GS
Sbjct: 170 RAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 2e-20
Identities = 67/213 (31%), Positives = 110/213 (51%), Gaps = 23/213 (10%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
AI+++ +SF Y T ++ + + I K A++G SG GKST I + R + + G
Sbjct: 7 AIKVKDLSFYYNTSKAIE---GISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE-GP 62
Query: 1099 VLLD--------NIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG-----KQGGAT 1145
V ++ NI P+ ++ LR+Q+G+V Q P F +I N+AYG K A
Sbjct: 63 VKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQAD 122
Query: 1146 EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDE 1205
+EI+ + +AL + + + + LSGGQ+QR+ IARA+ PK+LL+DE
Sbjct: 123 LDEIVESALKG------AALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDE 176
Query: 1206 ATSALDAESERVVQDALERVMVNRTTVVVAHRL 1238
SALD + V++ + + T +V H +
Sbjct: 177 PCSALDPIATMKVEELIHSLRSELTIAIVTHNM 209
|
Length = 259 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 2e-20
Identities = 61/178 (34%), Positives = 101/178 (56%), Gaps = 16/178 (8%)
Query: 1072 ALVGESGSGKSTVIALIERFYD--PD---SGHVLLD--NIELPKFKLSWLRQQMGLVSQE 1124
AL+G SGSGKST++ I R D P+ +G ++ + NI P+ LR+++G+V Q+
Sbjct: 35 ALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQ 94
Query: 1125 PVLFNETIRTNIAYG-KQGGATEEEII-AATEAS--NAHNFISALPHGYETNVGERGVQL 1180
P F +I N+ YG + G +++++ A E S A + +++ +G L
Sbjct: 95 PNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALG-----L 149
Query: 1181 SGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRL 1238
SGGQ+QR+ IAR + +PKI+LLDE TSALD S +++ L + + T ++V +
Sbjct: 150 SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSM 207
|
Length = 252 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 3e-20
Identities = 63/234 (26%), Positives = 107/234 (45%), Gaps = 35/234 (14%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+ELR +S + V+ + L++ G+ AL+GE+G+GKST++ ++ Y PDSG +
Sbjct: 9 LELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 1100 LLDNIELPKFKLSWLRQQMG--LVSQEPVLFNE-TIRTNIAYG----KQGG-----ATEE 1147
L+D + F G V QE L ++ NI G ++ G A
Sbjct: 66 LIDGKPVA-FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRR 124
Query: 1148 EIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEAT 1207
L VG+ LS Q+Q + IARA+ + ++L+LDE T
Sbjct: 125 RARELLARLGLDIDPDTL-------VGD----LSIAQRQMVEIARALSFDARVLILDEPT 173
Query: 1208 SALD-AESER---VVQDALERVMVNRTTVVVAHRLTTIK-NADIIAVVKNGVIA 1256
+AL E+ER +++ + + ++HRL + AD I V+++G +
Sbjct: 174 AALTVKETERLFDLIRRLKAQ---GVAIIYISHRLDEVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 3e-20
Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 24/224 (10%)
Query: 399 HVP--SGTTAALVGQSGSGKSTVISLVERFYD-----PDAGEVLIDGIDI--KKLQLKWI 449
HVP +G SG GKSTV+ + R D G V G D+ K + +
Sbjct: 28 HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVV 87
Query: 450 REKIGLVSQEPILFATSLRENIAYG-KENATDQEIRTAIELA-NAAKFIDKLPKGLDTMA 507
R IG+V Q+P F+ S+ +N+A+G + N ++ ++ A A D++ L
Sbjct: 88 RRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKV-- 145
Query: 508 GEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVV 567
G LSGGQ+QR+ IARAI P++LLLDE SALD + R V++ +V++ T +
Sbjct: 146 --SGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIAL 203
Query: 568 VAHRL-TTIRNADLIAVV--------HQGKIVEKGTHDELIKDP 602
V H + IR AD A G +VE G ++ ++P
Sbjct: 204 VTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNP 247
|
Length = 261 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 3e-20
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Query: 388 PEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD---AGEVLIDGIDIKKL 444
P + A + + G L+G SG GKST++S + GE+ ++ + L
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72
Query: 445 QLKWIREKIGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGL 503
+ +IG++ Q+ +LF S+ +N+ + R ANAA +++ GL
Sbjct: 73 PAA--QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARR--NAANAA--LERS--GL 124
Query: 504 DTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 546
D + LSGGQ+ R+A+ RA+L PK LLLDE S LD
Sbjct: 125 DGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 3e-20
Identities = 75/241 (31%), Positives = 116/241 (48%), Gaps = 30/241 (12%)
Query: 377 LRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLI 436
LR+V FR P R + SL P+G L+G +GSGKST++ ++ R P GE+L+
Sbjct: 14 LRNVSFRVPGRTLLH---PLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 437 DGIDIKKLQLK-WIREKIGLVSQEPILFATSLRENIAYGKE---------NATDQE-IRT 485
D ++ K + R+ L Q P ++RE +A G+ A D+E +
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130
Query: 486 AIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALD 545
AI L GL +A LSGG++QR IA + ++ + LLLDE TSALD
Sbjct: 131 AISLV-----------GLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
Query: 546 AESERIVQDALVKIMTSR---TTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELIKD 601
+ V ALV ++ T + V H + R D + + G+++ +GT EL++
Sbjct: 180 IAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRG 238
Query: 602 P 602
Sbjct: 239 E 239
|
Length = 265 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 4e-20
Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 22/181 (12%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+E R + + YP + + + G+ VAL+G +G+GKST+ P SG V
Sbjct: 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 1100 LLDNIELPKFKLSWL--RQQMGLVSQEP--VLFNETIRTNIAYGKQG-GATEEEI----I 1150
L+ + K S L R+ +G+V Q P LF T+ ++A+G G ++EE+
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVK 119
Query: 1151 AATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL 1210
A +A F + PH LSGGQK+R+AIA + P+I++LDE TS L
Sbjct: 120 EALKAVGMEGFENKPPH-----------HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGL 168
Query: 1211 D 1211
D
Sbjct: 169 D 169
|
Length = 275 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 4e-20
Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 28/243 (11%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+++R V F R IF SL VP G A++G SG GK+T++ L+ PD GE+
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 435 LIDGIDIKKL---QLKWIREKIGLVSQEPILFA-TSLRENIAYGKENAT---DQEIRTAI 487
L DG +I + +L +R+++ ++ Q LF ++ +N+AY T + + +
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV 124
Query: 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
+ A GL A ++LSGG +R A+ARAI P +++ DE D
Sbjct: 125 MMKLEA-------VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDP- 176
Query: 548 SERIVQDALVKIMTSR------TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600
I LVK+++ T VVV+H + + + AD +V KIV G+ L
Sbjct: 177 ---ITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233
Query: 601 DPE 603
+P+
Sbjct: 234 NPD 236
|
Length = 269 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 4e-20
Identities = 67/212 (31%), Positives = 107/212 (50%), Gaps = 23/212 (10%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYD--PDA---GEVLIDGIDI--KKLQLKWI 449
L +P A +G SG GKST++ R D P G+V G ++ + +
Sbjct: 30 WLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV 89
Query: 450 REKIGLVSQEPILFATSLRENIAYG-KENATDQEIRTAIE--LANAA---KFIDKLPKGL 503
R +IG+V Q+P F S+ +NIAYG + N ++ +E L AA + DKL
Sbjct: 90 RRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLK--- 146
Query: 504 DTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR 563
+ G LSGGQ+QR+ IARAI P+++L+DE SALD S +++ + ++
Sbjct: 147 -----QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQY 201
Query: 564 TTVVVAHRL-TTIRNADLIAVVHQGKIVEKGT 594
T ++V H + R +D+ A + ++ E G
Sbjct: 202 TIIIVTHNMQQAARVSDMTAFFNV-ELTEGGG 232
|
Length = 264 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 5e-20
Identities = 72/246 (29%), Positives = 115/246 (46%), Gaps = 41/246 (16%)
Query: 1045 VSFKYPT---RPDVQIFR---NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
V F R V R + L++ G+T+ LVGESGSGKST+ + R P G
Sbjct: 284 VWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL-IPSQGE 342
Query: 1099 VLLDNIELPKFK---LSWLRQQMGLVSQEPV-----------LFNETIRTNIAYGKQGGA 1144
+ D ++ + LR++M +V Q+P + E +R + + A
Sbjct: 343 IRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVH---EPKLSA 399
Query: 1145 TE--EEIIAA-TEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKIL 1201
E + +I A E + PH + SGGQ+QRIAIARA++ P+++
Sbjct: 400 AERDQRVIEALEEVGLDPATRNRYPH-----------EFSGGQRQRIAIARALILKPELI 448
Query: 1202 LLDEATSALDAESERVVQDALERVMVNR--TTVVVAHRLTTIKN-ADIIAVVKNGVIAEQ 1258
LLDE TSALD + V D L + + + ++H L ++ + V+++G I EQ
Sbjct: 449 LLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ 508
Query: 1259 GSHDAL 1264
G +A+
Sbjct: 509 GPTEAV 514
|
Length = 534 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (225), Expect = 5e-20
Identities = 73/238 (30%), Positives = 119/238 (50%), Gaps = 22/238 (9%)
Query: 1041 ELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD--PDS-- 1096
E+ ++F Y Q +N+ + + + AL+G SG GKST + R +D P +
Sbjct: 18 EVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHY 74
Query: 1097 -GHVLL----DNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIA 1151
G ++L NI P+ +R ++ +V Q+P F ++I N+AYG + + I
Sbjct: 75 EGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSIL 134
Query: 1152 ATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
NA +AL + +G+ LSGGQ+QR+ IARA+ +P+ILL DE TSALD
Sbjct: 135 EERVENALRN-AALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALD 193
Query: 1212 ----AESERVVQDALERVMVNRTTVVVAHRL-TTIKNADIIAVVKNGVIAEQGSHDAL 1264
A E ++ D +V T ++V H + + +D A + G + E G+ D +
Sbjct: 194 PIATASIEELISDLKNKV----TILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247
|
Length = 265 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (240), Expect = 6e-20
Identities = 115/472 (24%), Positives = 202/472 (42%), Gaps = 63/472 (13%)
Query: 4 NGGASTQLKGIKRGDNNNNINNNKNDGNDNQKVPFYK-LFA----------------FAD 46
NG + + + + + N ++ N K+PF + LF F+
Sbjct: 764 NGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSY 823
Query: 47 KQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAG 106
K+D ++ +S + +G +P L++ +++ D +++ +K ++ L +A
Sbjct: 824 KKDVTII---ALSILVAGGLYPVFALLYAKYVSTL--FDFANLEANSNKYSLYILVIAIA 878
Query: 107 TGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTT-GEVIGRMSGDTILI 165
I+ L+ V GE+ ++ + IL Q+I FFD + G + ++ D L+
Sbjct: 879 MFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLL 938
Query: 166 QEAMGEKV---GKFIQL------MSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMA 216
+ + + FI L MS +F V A+ G + + + + A + A +
Sbjct: 939 KTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVE 998
Query: 217 LIMSKMSSRGQIAYS-------EAGTVVEQTVSGIRTVSSFTGEK---QAIEK---YNNK 263
AY+ + ++++ + TV + E IEK Y+NK
Sbjct: 999 KKEINQPG-TVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNK 1057
Query: 264 LQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMT 323
Q R + M+ G + I ++ A W+GS LI G +++ M +
Sbjct: 1058 GQ--KRKTLVNSMLWGFSQSAQLF--INSF--AYWFGSFLI----RRGTILVDDFMKSLF 1107
Query: 324 GGMSLGQTSPCLNAFAGGQAAAYKMFET----IKRKPKIDPYDTSGITLEK---IEGEIE 376
+ G + L + G A FE I RK ID D GI ++ I+G+IE
Sbjct: 1108 TFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIE 1167
Query: 377 LRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD 428
+ DV FRY +RP V I+ + S T A+VG++GSGKSTV+SL+ RFYD
Sbjct: 1168 IMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD 1219
|
Length = 1466 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 6e-20
Identities = 75/218 (34%), Positives = 112/218 (51%), Gaps = 22/218 (10%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLR 1115
Q+ ++ L IPSG+ VAL+G SGSGK+T++ +I SGH+ ++ + L
Sbjct: 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSR--LHARD 73
Query: 1116 QQMGLVSQEPVLFNE-TIRTNIAYGKQGGATEEEIIAATEASNAHNFIS--ALPHGYETN 1172
+++G V Q LF T+ NIA+G E AA + + L H
Sbjct: 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH----- 128
Query: 1173 VGER-GVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR-- 1229
+ +R QLSGGQKQR+A+ARA+ P+ILLLDE ALDA+ V+ L R +
Sbjct: 129 LADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ----VRKELRRWLRQLHE 184
Query: 1230 ----TTVVVAH-RLTTIKNADIIAVVKNGVIAEQGSHD 1262
T+V V H + ++ AD + V+ G I + G+ D
Sbjct: 185 ELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPD 222
|
Length = 353 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 91.5 bits (227), Expect = 6e-20
Identities = 58/204 (28%), Positives = 108/204 (52%), Gaps = 17/204 (8%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLV 456
+L + G A+ G +GSGK++++ L+ +P G++ G +I
Sbjct: 57 NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RISFS 103
Query: 457 SQEPILFATSLRENIAYGKENATDQ-EIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLS 515
SQ + +++ENI +G + D+ ++ ++ + I K P+ +T+ GE G LS
Sbjct: 104 SQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLS 161
Query: 516 GGQKQRIAIARAILKNPKILLLDEATSALDAESER-IVQDALVKIMTSRTTVVVAHRLTT 574
GGQ+ RI++ARA+ K+ + LLD LD +E+ I + + K+M ++T ++V ++
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEH 221
Query: 575 IRNADLIAVVHQGKIVEKGTHDEL 598
++ AD I ++H+G GT EL
Sbjct: 222 LKKADKILILHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 6e-20
Identities = 76/246 (30%), Positives = 112/246 (45%), Gaps = 54/246 (21%)
Query: 396 FSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL--------- 446
F L+ G +VG+SGSGK+T+++ + PDAGEV D + L
Sbjct: 27 FDLY--PGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84
Query: 447 KWIREKIGLVSQEPILFATSLR------ENIA----------YGKENATDQEIRTAIELA 490
+ +R + G V Q P LR NI YG AT + +E+
Sbjct: 85 RLLRTEWGFVHQHP---RDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEID 141
Query: 491 NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER 550
A ID LP T SGG +QR+ IAR ++ +P+++ +DE T LD
Sbjct: 142 --AARIDDLP-----------TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS--- 185
Query: 551 IVQDALVKIMTSRTT------VVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPE 603
VQ L+ ++ V+V H L R A + V+ QG++VE G D+++ DP+
Sbjct: 186 -VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQ 244
Query: 604 GPYTQL 609
PYTQL
Sbjct: 245 HPYTQL 250
|
Length = 258 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 7e-20
Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 40/246 (16%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKS-TVIALIERFYDPD----SGHV 1099
V+F V+ + + I +G+T+ALVGESGSGKS T ++++ P SG +
Sbjct: 14 VAFHQEGG-TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI 72
Query: 1100 LLDNIELPKFKLSWLR----QQMGLVSQEP-VLFN----------ETIRTNIAYGKQGGA 1144
L D +L LR ++G++ QEP N E +R + G A
Sbjct: 73 LFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLR--LHRGLSRAA 130
Query: 1145 TEEEIIAATEA---SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKIL 1201
+ E + A PH +LSGGQ+QR+ IA A+ P +L
Sbjct: 131 ARARALELLELVGIPEPEKRLDAYPH-----------ELSGGQRQRVMIAMALANEPDLL 179
Query: 1202 LLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQ 1258
+ DE T+ALD + + D L+ + + + + H L ++ AD + V+++G I E
Sbjct: 180 IADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVET 239
Query: 1259 GSHDAL 1264
G+ + L
Sbjct: 240 GTTETL 245
|
Length = 534 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 7e-20
Identities = 58/181 (32%), Positives = 100/181 (55%), Gaps = 2/181 (1%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
+ S V G L+G++GSGKST++S + R + GE+ IDG+ + L+ R+
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRK 1292
Query: 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHG 511
G++ Q+ +F+ + R+N+ E +D+EI E I++ P LD + + G
Sbjct: 1293 AFGVIPQKVFIFSGTFRKNLD-PYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351
Query: 512 TQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHR 571
LS G KQ + +AR+IL KILLLDE ++ LD + +I++ L + ++ T ++ HR
Sbjct: 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHR 1411
Query: 572 L 572
+
Sbjct: 1412 V 1412
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (228), Expect = 8e-20
Identities = 67/228 (29%), Positives = 111/228 (48%), Gaps = 12/228 (5%)
Query: 1041 ELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG--- 1097
E+R +F Y R + +L L I K A +G SG GKST + + + D G
Sbjct: 82 EIRNFNFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 1098 ----HVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG-KQGGATEEEIIAA 1152
+ L N K LR ++G+V Q+P F +I N+AYG + G + +I+
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 1153 TEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
+ + +AL + ++ + G LSGGQ+QR+ IARA+ P++LL+DE TSALD
Sbjct: 201 IVEKSLKS--AALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDP 258
Query: 1213 ESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259
+ +++ + + + ++V H + + +D G I E G
Sbjct: 259 IATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 8e-20
Identities = 64/221 (28%), Positives = 99/221 (44%), Gaps = 40/221 (18%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
I L +S Y RP + N+ L++ G+ + LVG +G+GKST++ ++ +PDSG V
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYGKQGGATEEEIIAATEASNA 1158
++G +SQEP L +T+ + G + A A
Sbjct: 61 TRPKGL-----------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 1159 HNFISAL-----------PHGYETNVGE--RGVQ----------LSGGQKQRIAIARAVL 1195
L E E G+ LSGG ++R+A+ARA+L
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 1196 KNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAH 1236
+ P +LLLDE T+ LD ES ++D L+R T +VV+H
Sbjct: 170 EEPDLLLLDEPTNHLDLESIEWLEDYLKR--YPGTVIVVSH 208
|
Length = 530 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 9e-20
Identities = 76/277 (27%), Positives = 136/277 (49%), Gaps = 32/277 (11%)
Query: 371 IEGEIELRDVY--FRYPA----RPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVE 424
IE +E+R++ FRY R V+ S + G T A++G++GSGKST+ ++
Sbjct: 1 IETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLA 60
Query: 425 RFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSL--RENIAYGKENATDQE 482
+P +GE+LI+ + + ++I ++ Q+P TSL R I D
Sbjct: 61 GMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDP---NTSLNPRLRIG----QILDFP 113
Query: 483 IRTAIELANAA---KFIDKLPK-GL-DTMAGEHGTQLSGGQKQRIAIARAILKNPKILLL 537
+R +L + + L GL A + L+ GQKQR+A+ARA++ PKI++
Sbjct: 114 LRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIA 173
Query: 538 DEATSALDAESERIVQDALVKIMTSR------TTVVVAHRLTTIRN-ADLIAVVHQGKIV 590
DEA ++LD ++ L+ +M + + V + I++ +D + V+H+G++V
Sbjct: 174 DEALASLDMS----MRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVV 229
Query: 591 EKGTHDELIKDPEGPYTQ-LVRLQEGSKEAEDALATD 626
E+G+ +++ P T+ L+ G DA D
Sbjct: 230 ERGSTADVLASPLHELTKRLIESHFGEALTADAWRKD 266
|
Length = 267 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 9e-20
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 23/217 (10%)
Query: 377 LRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLI 436
L V RY R + LH+P+G A+VG+SG GKST++ L+ P AGE+L
Sbjct: 15 LNAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71
Query: 437 DGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIAYGKENATDQEIRTAIELANAAKF 495
L RE L+ Q+ L + +N+ G + A+
Sbjct: 72 G-----TAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV----- 121
Query: 496 IDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDA 555
GL A E LSGGQKQR+A+ARA++ P +LLLDE ALDA + +QD
Sbjct: 122 ------GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDL 175
Query: 556 LVKIMTSR--TTVVVAHRLT-TIRNADLIAVVHQGKI 589
+ + T ++V H ++ + AD + ++ +GKI
Sbjct: 176 IESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 1e-19
Identities = 62/185 (33%), Positives = 98/185 (52%), Gaps = 12/185 (6%)
Query: 1063 LSIPSGKTVALVGESGSGKSTVIALIERFYD--PD---SGHVLL--DNIELPKFKLSWLR 1115
L + AL+G SG GKST + + R D P +G+V L NI P + LR
Sbjct: 26 LDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLR 85
Query: 1116 QQMGLVSQEPVLFNETIRTNIAYG-KQGGATEEEII-AATEASNAHNFISALPHGYETNV 1173
+Q+G+V Q+P F +I N+ YG + G ++ ++ A E S +A+ + ++
Sbjct: 86 KQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQ---AAIWDEVKDHL 142
Query: 1174 GERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVV 1233
E + LSGGQ+QR+ IAR + P ++LLDE TSALD S +++ L + T ++
Sbjct: 143 HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIIL 202
Query: 1234 VAHRL 1238
V H +
Sbjct: 203 VTHSM 207
|
Length = 252 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 1e-19
Identities = 64/192 (33%), Positives = 102/192 (53%), Gaps = 12/192 (6%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD--PD---SGHVLL--DNIELPK 1108
+N+ LSIP + A++G SG GKST I + P+ +G + NI K
Sbjct: 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85
Query: 1109 FKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ--GGATEEEIIAATEASNAHNFISALP 1166
L LR+ +G+V Q+ F ++I N+AYG + G ++++ E S AL
Sbjct: 86 VDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKD---VALW 142
Query: 1167 HGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM 1226
+ + + + LSGGQ+QR+ IARA+ NP +LL+DE TSALD S R +++ + ++
Sbjct: 143 DEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK 202
Query: 1227 VNRTTVVVAHRL 1238
T V+V H +
Sbjct: 203 EKYTIVIVTHNM 214
|
Length = 259 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.7 bits (222), Expect = 1e-19
Identities = 69/221 (31%), Positives = 112/221 (50%), Gaps = 13/221 (5%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLD--NIEL 1106
D + N+ + I AL+G SG GKST + + R D G+V+ + NI
Sbjct: 19 DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78
Query: 1107 PKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ--GGATEEEIIAATEASNAHNFISA 1164
F + LR+++G+V Q P F +I NI+YG + G ++++ E S SA
Sbjct: 79 NNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKK---SA 135
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224
L + + + + LSGGQ+QR+ IAR + P ++L+DE TSALD S +++ +
Sbjct: 136 LWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIIN 195
Query: 1225 VMVNRTTVVVAHRLTTI-KNADIIAVVKNGVIAEQGSHDAL 1264
+ + T ++V H + + +D A NG I E+ S D L
Sbjct: 196 LKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
|
Length = 254 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 1e-19
Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 10/187 (5%)
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLL--DNIELPKFKL 1111
+N+ L IP + A +G SG GKST++ R D G V N+ P
Sbjct: 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86
Query: 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYET 1171
+R+++G+V Q+P F ++I NIAYG + + ++ E S +AL +
Sbjct: 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQ---AALWDEVKD 143
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTT 1231
+ + G+ LSGGQ+QR+ IARA+ P+++L+DE SALD S +++ + + T
Sbjct: 144 KLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTI 203
Query: 1232 VVVAHRL 1238
++V H +
Sbjct: 204 IIVTHNM 210
|
Length = 264 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 1e-19
Identities = 69/248 (27%), Positives = 125/248 (50%), Gaps = 33/248 (13%)
Query: 387 RPEVQIFAGFSLHVPSGTTAALVGQSGSGKS-TVISLVERFYDPDAGEV----------- 434
+ ++ S + G T A+VG+SGSGKS T ++L+ R + G V
Sbjct: 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALM-RLLEQAGGLVQCDKMLLRRRS 84
Query: 435 --LIDGIDIKKLQLKWIR-EKIGLVSQEPILFATSLRENIAYGKENATD----QEIRTAI 487
+I+ + Q++ +R + ++ QEP+ TSL G++ A Q
Sbjct: 85 RQVIELSEQSAAQMRHVRGADMAMIFQEPM---TSLNPVFTVGEQIAESIRLHQGASREE 141
Query: 488 ELANAAKFID--KLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALD 545
+ A + +D ++P+ T+ + QLSGG +QR+ IA A+ P +L+ DE T+ALD
Sbjct: 142 AMVEAKRMLDQVRIPEA-QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALD 200
Query: 546 AESE-RIVQDALVKIMT---SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600
+ +I+Q L+K++ S + + H + + AD + V++QG+ VE G+ +++
Sbjct: 201 VTIQAQILQ--LIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFH 258
Query: 601 DPEGPYTQ 608
P+ PYT+
Sbjct: 259 APQHPYTR 266
|
Length = 623 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 2e-19
Identities = 69/215 (32%), Positives = 109/215 (50%), Gaps = 20/215 (9%)
Query: 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQ-- 1117
NL L+I G V L+G SG GK+TV+ L+ P G + +D ++ + QQ
Sbjct: 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI----QQRD 79
Query: 1118 MGLVSQEPVLF-NETIRTNIAYG-KQGGATEEEIIAATEASNAHNFISALPHGYETNVGE 1175
+ +V Q LF + ++ N+ YG K G +EE A + G+E +
Sbjct: 80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEER--KQRVKEALELVDL--AGFE----D 131
Query: 1176 RGV-QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTV 1232
R V Q+SGGQ+QR+A+ARA++ PK+LL DE S LDA R +++ + + N T++
Sbjct: 132 RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSL 191
Query: 1233 VVAHRLT-TIKNADIIAVVKNGVIAEQGSHDALMK 1266
V H + +D + V+ G I + GS L +
Sbjct: 192 YVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226
|
Length = 351 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 2e-19
Identities = 76/257 (29%), Positives = 127/257 (49%), Gaps = 22/257 (8%)
Query: 371 IEGE--IELRDVYFRYPARP--------EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVI 420
++GE +++R++ R+P R EV S + G T +LVG+SGSGKST
Sbjct: 308 VDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTG 367
Query: 421 SLVERFYDPDAGEVLIDGIDIKKL---QLKWIREKIGLVSQEPILFATSLRENIAYGKEN 477
+ R + GE++ +G I L +L+ +R I + Q+P SL G
Sbjct: 368 RALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPY---ASLDPRQTVGDSI 424
Query: 478 ATDQEIRTAIELANAAKFIDKLPK--GL-DTMAGEHGTQLSGGQKQRIAIARAILKNPKI 534
+ + AA + L + GL A + + SGGQ+QRI IARA+ NPK+
Sbjct: 425 MEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKV 484
Query: 535 LLLDEATSALDAESERIVQDALVKIMTSR--TTVVVAHRLTTI-RNADLIAVVHQGKIVE 591
++ DEA SALD + + L+ + + ++H + + R + +AV++ G+IVE
Sbjct: 485 IIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE 544
Query: 592 KGTHDELIKDPEGPYTQ 608
G + ++P+ PYT+
Sbjct: 545 IGPRRAVFENPQHPYTR 561
|
Length = 623 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 2e-19
Identities = 71/240 (29%), Positives = 103/240 (42%), Gaps = 52/240 (21%)
Query: 403 GTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL---------KWIREKI 453
G +VG+SGSGK+T++ + PDAG V D + L + +R +
Sbjct: 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEW 91
Query: 454 GLVSQEPI----------------LFATSLRENIAYGKENATDQEIRTAIELANAAKFID 497
G V Q P L A R YG A Q+ +E+ ID
Sbjct: 92 GFVHQNPRDGLRMQVSAGGNIGERLMAIGARH---YGNIRAEAQDWLEEVEID--LDRID 146
Query: 498 KLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALV 557
LP SGG +QR+ IAR ++ P+++ +DE T LD VQ L+
Sbjct: 147 DLP-----------RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS----VQARLL 191
Query: 558 KIMTSRTT------VVVAHRLTTIR-NADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610
++ V+V H L R AD + V+ QG++VE G D ++ DP PYTQL+
Sbjct: 192 DLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLL 251
|
Length = 258 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (221), Expect = 2e-19
Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 36/261 (13%)
Query: 369 EKIEGEIELRDVYFRYPARPEVQIFAGF---------SLHVPSGTTAALVGQSGSGKSTV 419
E++ G+ DV PA V + GF S+ P+ +L+G +GSGK+T
Sbjct: 4 ERLGGQSGAADVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTF 63
Query: 420 ISLVERFYDP-----DAGEVLIDGIDIKKLQ-LKWIREKIGLVSQEPILFATSLRENIAY 473
+ + R D +G+VL+ G I + + R ++G++ Q P F S+ +N+
Sbjct: 64 LRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLA 123
Query: 474 G---------KE-NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIA 523
G KE Q T + L +A K D+L + +LSGGQ+Q +
Sbjct: 124 GVRAHKLVPRKEFRGVAQARLTEVGLWDAVK--DRL--------SDSPFRLSGGQQQLLC 173
Query: 524 IARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLT-TIRNADLIA 582
+AR + NP++LLLDE TSALD + +++ + + T ++V H L R +D A
Sbjct: 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAA 233
Query: 583 VVHQGKIVEKGTHDELIKDPE 603
+ G++VE+G ++L P+
Sbjct: 234 LFFDGRLVEEGPTEQLFSSPK 254
|
Length = 276 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 3e-19
Identities = 68/235 (28%), Positives = 109/235 (46%), Gaps = 37/235 (15%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL--------- 1106
++ + + L +G ++++G SGSGKST + I P +G + ++ E+
Sbjct: 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ 79
Query: 1107 ----PKFKLSWLRQQMGLVSQEPVLFN----ETIRTNIAYGKQG--GATEEEIIAATEAS 1156
K +L LR ++G+V Q FN T+ N+ G ++ E I E
Sbjct: 80 LKPADKRQLQRLRTRLGMVFQH---FNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKY 136
Query: 1157 NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD----A 1212
A I+ Y LSGGQ+QR+AIARA+ P+++L DE TSALD
Sbjct: 137 LAKVGIAEKADAYP-------AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVG 189
Query: 1213 ESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266
E +V+QD E RT VVV H + ++ + + + G I E+G + +
Sbjct: 190 EVLKVMQDLAEE---GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFG 241
|
Length = 256 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 3e-19
Identities = 72/219 (32%), Positives = 101/219 (46%), Gaps = 31/219 (14%)
Query: 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD----SGHVLLDNIELPKFKLSWLR 1115
+L LS+ G+ +ALVGESGSGKS I P SG +LLD L LS
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL--LPLSIRG 61
Query: 1116 QQMGLVSQEPV-LFN----------ETIRTNIAYGKQGGATEEEIIAATEASNAHNFISA 1164
+ + + Q P FN ET+R + GK I+ A EA
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAIETLR---SLGKLSKQARALILEALEAVG------- 111
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224
LP E + + QLSGG QR+ IA A+L P L+ DE T+ LD ++ V L
Sbjct: 112 LPDP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 1225 VMVNRTT--VVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
+ T +++ H L + AD +AV+ +G I E+G+
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 3e-19
Identities = 60/236 (25%), Positives = 101/236 (42%), Gaps = 48/236 (20%)
Query: 1030 GMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALI- 1088
G+TLS L P++ Q+ +N+ G+ A++G SG+GKST++ +
Sbjct: 1 GVTLS----FRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALA 56
Query: 1089 -ERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYGKQGGATE 1146
R SG VL++ L K R+ +G V Q+ +L T+R + +
Sbjct: 57 GRRTGLGVSGEVLINGRPLDKR---SFRKIIGYVPQDDILHPTLTVRETLMF-------- 105
Query: 1147 EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEA 1206
+A G LSGG+++R++IA ++ NP +L LDE
Sbjct: 106 ----------------AAKLRG-----------LSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 1207 TSALDAESERVVQDALER-VMVNRTTVVVAHRLTT--IKNADIIAVVKNGVIAEQG 1259
TS LD+ S V L R RT + H+ ++ + D + ++ G + G
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 3e-19
Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 14/170 (8%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL---QLK 447
Q G + H+ G A L G SG+GKST++ L+ P AG++ G DI +L ++
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 448 WIREKIGLVSQEP-ILFATSLRENIAYGK--ENATDQEIRTAIELANAAKFIDKLPKGLD 504
++R +IG++ Q+ +L ++ +N+A A+ +IR + A +DK+ GL
Sbjct: 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAA-----LDKV--GLL 128
Query: 505 TMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALD-AESERIVQ 553
A QLSGG++QR+ IARA++ P +LL DE T LD A SE I++
Sbjct: 129 DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR 178
|
Length = 222 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 4e-19
Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 9/191 (4%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLR 1115
+ L L I G V ++G +G+GKST++ I P SG +L+D +++ K K R
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTK-KSVAKR 78
Query: 1116 QQM-GLVSQEPV--LFNE-TIRTNIAYGKQGGATEEEIIAATEASNAH--NFISALPHGY 1169
+ V Q+P+ E TI N+A + G A E + ++ L G
Sbjct: 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGL 138
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR 1229
E + +R LSGGQ+Q +++ A L PKILLLDE T+ALD ++ V + +++
Sbjct: 139 ENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEH 198
Query: 1230 --TTVVVAHRL 1238
TT++V H +
Sbjct: 199 KLTTLMVTHNM 209
|
Length = 263 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 4e-19
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 41/221 (18%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
I L ++ Y RP + SL + G LVG++G+GKST++ ++ +PD+GEV
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAA 493
++G +SQEP L ++ + + G + A A
Sbjct: 61 TRPK-----------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 494 KFIDKLPKGLDTMAGEHG------------------------TQLSGGQKQRIAIARAIL 529
D+L L+ + E + LSGG ++R+A+ARA+L
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 530 KNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAH 570
+ P +LLLDE T+ LD ES ++D L + T +VV+H
Sbjct: 170 EEPDLLLLDEPTNHLDLESIEWLEDYLKR--YPGTVIVVSH 208
|
Length = 530 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 4e-19
Identities = 63/184 (34%), Positives = 91/184 (49%), Gaps = 21/184 (11%)
Query: 1042 LRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLL 1101
L VS +Y R + L L IP+G+ VA+VG SG GKST++ L+ P +G +L
Sbjct: 15 LNAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71
Query: 1102 DNIELPKFKLSWLRQQMGLVSQEPVLFN-ETIRTNIAYGKQGGATEEEIIAATEASNAHN 1160
L+ R+ L+ Q+ L + + N+ G +G + AA +A A
Sbjct: 72 GTA-----PLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRD----AALQALAAV- 121
Query: 1161 FISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQD 1220
G E LSGGQKQR+A+ARA++ P +LLLDE ALDA + +QD
Sbjct: 122 -------GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQD 174
Query: 1221 ALER 1224
+E
Sbjct: 175 LIES 178
|
Length = 257 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 4e-19
Identities = 86/313 (27%), Positives = 139/313 (44%), Gaps = 65/313 (20%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKS-TVISLVERFYDPDA----GEVLIDG---IDIK 442
+ SL + +G T ALVG+SGSGKS T +S++ P G++ G +
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82
Query: 443 KLQLKWIR-EKIGLVSQEPILFATSLR--ENIAY---------GKENATDQEI----RTA 486
+ L+ +R KI ++ QEP++ L E Y +E A + + R
Sbjct: 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVG 142
Query: 487 IELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 546
I AAK + P H QLSGG++QR+ IA A+L P++L+ DE T+ALD
Sbjct: 143 IR--QAAKRLTDYP---------H--QLSGGERQRVMIAMALLTRPELLIADEPTTALDV 189
Query: 547 ESERIVQDALVKIMT------SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELI 599
VQ +++++ + + + H L+ +R AD +AV+ G+ VE+ L
Sbjct: 190 S----VQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLF 245
Query: 600 KDPEGPYTQLVRLQEGSKEAEDALATDA------DKLDSSFDILDKAMTRSGSRGESMRR 653
P PYTQ + E S + L A ++L +F I R ++R
Sbjct: 246 SAPTHPYTQKLLNSEPSGDP-VPLPEPASPLLDVEQLQVAFPI----------RKGILKR 294
Query: 654 SISRHSSGSRHSF 666
++ + SF
Sbjct: 295 TVDHNVVVKNISF 307
|
Length = 529 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 5e-19
Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 23/231 (9%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IE R + + Y + N+ P +A++G +G+GKST+ P SG V
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEP--VLFNETIRTNIAYGKQGGATEEEIIAATEASN 1157
L+ + K + +R+ +GLV Q P +F+ T+ +IA+G +EE +A +S
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 1158 AH-----NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
H +PH LSGG+K+R+AIA + P++L+LDE T+ LD
Sbjct: 122 LHMLGLEELRDRVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170
Query: 1213 ESERVVQDALERVMVN--RTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
+ + + D L + T + H+L + AD I V+ G I G+
Sbjct: 171 QGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGT 221
|
Length = 277 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.7 bits (217), Expect = 6e-19
Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 21/220 (9%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIA----LIERFYDPD-SGHVLLDNIELPK 1108
V++ + L IP AL+G SGSGKST++ LIE + + SG V LD ++ K
Sbjct: 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74
Query: 1109 FKLSWLRQQMGLVSQEP-VLFNETIRTNIAYG-------KQGGATEEEIIAATEASNAHN 1160
+ LR+++ +V Q P + N +I N+A G K +E + A E +
Sbjct: 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQ--- 131
Query: 1161 FISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQD 1220
L + + +LSGGQ+QR+ IARA+ P++LL DE T+ LD E+ ++
Sbjct: 132 ----LWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIES 187
Query: 1221 ALERVMVNRTTVVVAH-RLTTIKNADIIAVVKNGVIAEQG 1259
+ + T V+V H + +D +A + G I E G
Sbjct: 188 LFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
|
Length = 250 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 6e-19
Identities = 55/218 (25%), Positives = 107/218 (49%), Gaps = 13/218 (5%)
Query: 1046 SFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIE 1105
F+ + VQ + ++ G+ L+G +G+GK+T + ++ +PD+G +D +
Sbjct: 10 RFRDVKKT-VQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD 68
Query: 1106 LPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAY-GKQGGATEEEIIAATEASNAHNFIS 1163
+ K R+++G VS L++ T R N+ Y G +E+ A E
Sbjct: 69 VVKEPAE-ARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLE-----ELAD 122
Query: 1164 ALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALE 1223
L G E + R S G +Q++AIARA++ +P +LLLDE T+ LD + R +++ +
Sbjct: 123 RL--GMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIR 180
Query: 1224 RVMVNRTTVVVA-HRLTTIKN-ADIIAVVKNGVIAEQG 1259
++ ++ + H + ++ D + V+ G + +G
Sbjct: 181 QLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 6e-19
Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 49/242 (20%)
Query: 395 GFSLHVPSGTTAALVGQSGSGKST----VISLVERFYDPDAGEVLIDGIDIKKL---QLK 447
G +L + G T +VG+SG GKST +I LV+ GEV G D+ + + +
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK----ATDGEVAWLGKDLLGMKDDEWR 94
Query: 448 WIREKIGLVSQEPILFATSLRENIAYG----------KENATDQEIRTAIE--------L 489
+R I ++ Q+P+ SL + G + QE++ ++ L
Sbjct: 95 AVRSDIQMIFQDPL---ASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL 151
Query: 490 ANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESE 549
N I++ P H + SGGQ QRI IARA++ PK+++ DE SALD +
Sbjct: 152 PN---LINRYP---------H--EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQ 197
Query: 550 RIVQDALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPY 606
V + L ++ + + +AH L +++ +D + V++ G VE GT+DE+ +P PY
Sbjct: 198 AQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPY 257
Query: 607 TQ 608
T+
Sbjct: 258 TK 259
|
Length = 331 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 8e-19
Identities = 63/220 (28%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 393 FAGFSLHVP-----------SGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDI 441
F+ FSL+V G A+ G +GSGKS+++ ++ +P G++ G
Sbjct: 431 FSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--- 487
Query: 442 KKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIR--TAIELANAAKFIDKL 499
+I Q + ++++NI +G + E R + I+ + I
Sbjct: 488 ----------RISFSPQTSWIMPGTIKDNIIFG---LSYDEYRYTSVIKACQLEEDIALF 534
Query: 500 PKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER-IVQDALVK 558
P+ T+ GE G LSGGQ+ RI++ARA+ K+ + LLD + LD +E+ I + L K
Sbjct: 535 PEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK 594
Query: 559 IMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDEL 598
+M+++T ++V +L ++ AD I ++H+G GT EL
Sbjct: 595 LMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 92.7 bits (230), Expect = 8e-19
Identities = 58/202 (28%), Positives = 109/202 (53%), Gaps = 4/202 (1%)
Query: 1037 GGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS 1096
GG ++++ ++ KY T + ++L S+ G+ V L+G +GSGKST+++ + R +
Sbjct: 1215 GGQMDVQGLTAKY-TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE- 1272
Query: 1097 GHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEAS 1156
G + +D + L R+ G++ Q+ +F+ T R N+ +Q ++EEI E
Sbjct: 1273 GEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQ--WSDEEIWKVAEEV 1330
Query: 1157 NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER 1216
+ I P + + + G LS G KQ + +AR++L KILLLDE ++ LD + +
Sbjct: 1331 GLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQ 1390
Query: 1217 VVQDALERVMVNRTTVVVAHRL 1238
+++ L++ N T ++ HR+
Sbjct: 1391 IIRKTLKQSFSNCTVILSEHRV 1412
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 9e-19
Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 17/216 (7%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLL--DNIEL 1106
+ +N+ L I + A++G SG GKST I + R + +G +L NI
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95
Query: 1107 PKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG-KQGGATEEEI---IAATEASNAHNFI 1162
+ + LR +G+V Q+P F ++I N+ YG K G +++ I A
Sbjct: 96 KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGA---- 151
Query: 1163 SALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDAL 1222
A+ + + + LSGGQ+QR+ IAR + P ++L+DE TSALD S V++ +
Sbjct: 152 -AIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELV 210
Query: 1223 ERVMVNRTTVVVAHRL-TTIKNADIIAVVKNGVIAE 1257
+ + + + ++V H + + +D A NG + E
Sbjct: 211 QELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE 246
|
Length = 271 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 26/235 (11%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IEL+ VS + + I +L + G+ A+VG +G+GK+T+++L+ + P SG V
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 1100 LLDNIELPKFKLSW-LRQQMGLVS---QEPVLFNETIRTNIAYGK-------QGGATEEE 1148
L K + + LR+++GLVS E ET+R + G Q T E+
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 1149 IIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATS 1208
+ AA + + LS G+++R+ IARA++K+P++L+LDE
Sbjct: 149 LAAAQWLLELLGAKHLADRPFGS--------LSQGEQRRVLIARALVKDPELLILDEPAQ 200
Query: 1209 ALDAESERVVQDALERVMVNR---TTVVVAHRLTTI-KNADIIAVVKNGVIAEQG 1259
LD + + + LE + + + V H I ++K G + QG
Sbjct: 201 GLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 1e-18
Identities = 59/198 (29%), Positives = 101/198 (51%), Gaps = 16/198 (8%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116
+ +N+ L I G+ +A+ G +GSGK++++ LI +P G K K S
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEG----------KIKHS---G 98
Query: 1117 QMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGER 1176
++ SQ + TI+ NI +G E + +A I+ P T +GE
Sbjct: 99 RISFSSQFSWIMPGTIKENIIFGVS--YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG 156
Query: 1177 GVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER-VVQDALERVMVNRTTVVVA 1235
G+ LSGGQ+ RI++ARAV K+ + LLD LD +E+ + + + ++M N+T ++V
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVT 216
Query: 1236 HRLTTIKNADIIAVVKNG 1253
++ +K AD I ++ G
Sbjct: 217 SKMEHLKKADKILILHEG 234
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 1e-18
Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 35/234 (14%)
Query: 394 AGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLI-DG---IDIKKL---QL 446
SL + G L+G SGSGKST++ V G VL+ DG +D+ L
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 447 KWIR-EKIGLVSQEPILFA----TSLRENIAYGKENA--TDQEIR----TAIELANAAKF 495
+ +R ++ +V Q+ FA ++ EN+A+G E E R +EL A++
Sbjct: 101 RRLRTHRVSMVFQQ---FALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQW 157
Query: 496 IDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDA 555
D+ P GE LSGG +QR+ +ARA ILL+DE SALD +QD
Sbjct: 158 ADRKP-------GE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDE 206
Query: 556 LVKIMT--SRTTVVVAHRL-TTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPY 606
L+++ + +T V V+H L ++ + IA++ G+I++ GT +E++ +P Y
Sbjct: 207 LLELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDY 260
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 91.9 bits (228), Expect = 2e-18
Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 16/209 (7%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116
+ +N+ + G+ +A+ G +GSGKS+++ +I +P G K K S
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEG----------KIKHS---G 487
Query: 1117 QMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGER 1176
++ Q + TI+ NI +G E + +A I+ P +T +GE
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFGLS--YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEG 545
Query: 1177 GVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER-VVQDALERVMVNRTTVVVA 1235
G+ LSGGQ+ RI++ARAV K+ + LLD + LD +E+ + + L ++M N+T ++V
Sbjct: 546 GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVT 605
Query: 1236 HRLTTIKNADIIAVVKNGVIAEQGSHDAL 1264
+L +K AD I ++ GV G+ L
Sbjct: 606 SKLEHLKKADKILLLHEGVCYFYGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 2e-18
Identities = 78/268 (29%), Positives = 127/268 (47%), Gaps = 40/268 (14%)
Query: 375 IELRDVYFRYPARPEVQIFAG--FSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
+ R + +Y V++ G F+LH +G AL+G +G+GKST++ ++ PD+G
Sbjct: 12 LCARSISKQYSG---VEVLKGIDFTLH--AGEVHALLGGNGAGKSTLMKIIAGIVPPDSG 66
Query: 433 EVLIDGIDIKKLQ-LKWIREKIGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELA 490
+ I G +L K + I LV QEP+LF S++ENI +G + LA
Sbjct: 67 TLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLA 126
Query: 491 NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALD-AESE 549
+D LD+ AG L +Q + I R ++++ +IL+LDE T++L AE+E
Sbjct: 127 ALGCQLD-----LDSSAG----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETE 177
Query: 550 RI------VQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDP 602
R+ + V I V ++H+L IR AD I+V+ G I G +L D
Sbjct: 178 RLFSRIRELLAQGVGI------VFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD- 230
Query: 603 EGPYTQLVRLQEGSKEAEDALATDADKL 630
+Q + A + + + KL
Sbjct: 231 -------DIIQAITPAAREKSLSASQKL 251
|
Length = 510 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 2e-18
Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 25/186 (13%)
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454
G +L + G +L+G SG GKST+++L+ P +G V+++G I + +++
Sbjct: 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDRMV 58
Query: 455 LVSQEPILFATSLRENIAYGKE------NATDQE--IRTAIELANAAKFIDKLPKGLDTM 506
+ +L ++RENIA + + +++ + I L + DK P
Sbjct: 59 VFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP------ 112
Query: 507 AGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR--T 564
QLSGG KQR+AIARA+ PK+LLLDE ALDA + +Q+ L++I T
Sbjct: 113 -----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVT 167
Query: 565 TVVVAH 570
++V H
Sbjct: 168 VLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 2e-18
Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 24/218 (11%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW 448
+ + G L V G+ LVG +G+GK+T++ + P AG VL+ G D++ L +
Sbjct: 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARA 74
Query: 449 IREKIGLVSQEPIL-FATSLRENIAYGK----------ENATDQEIRTAIELANAAKFID 497
++ V Q+ L F +R+ + G+ + A+E A+F D
Sbjct: 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD 134
Query: 498 KLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESE-RIVQDAL 556
+ T LSGG++QR+ +ARA+ + +LLLDE T++LD + R ++
Sbjct: 135 R-----------PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVR 183
Query: 557 VKIMTSRTTVVVAHRLT-TIRNADLIAVVHQGKIVEKG 593
+ +T V H L R D + ++ G++ G
Sbjct: 184 RLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
Length = 402 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (214), Expect = 2e-18
Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 28/249 (11%)
Query: 373 GEIELRDVYFRYPARP--EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD 430
+I L +V + Y + E + SL ++G +GSGKST+I L +
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 431 AGEVLIDG----IDIKKL-QLKWIREKIGLVSQEP--ILFATSLRENIAYGKENATDQEI 483
G+ ++ ++KK+ ++K +R++IGLV Q P LF ++ ++IA+G N
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLG---- 120
Query: 484 RTAIELANAAKFIDKLPKGLDTM------AGEHGTQLSGGQKQRIAIARAILKNPKILLL 537
N + K+P+ L + +LSGGQK+R+A+A I + L+L
Sbjct: 121 ------ENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVL 174
Query: 538 DEATSALDAESERIVQDALVKIMTS--RTTVVVAHRLTTI-RNADLIAVVHQGKIVEKGT 594
DE T LD + E + ++ + ++V H + + R AD + V+H+GK++ G+
Sbjct: 175 DEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
Query: 595 HDELIKDPE 603
E+ + E
Sbjct: 235 PFEIFSNQE 243
|
Length = 289 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 3e-18
Identities = 53/224 (23%), Positives = 103/224 (45%), Gaps = 20/224 (8%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
++ ++ Y + + ++ L + G+ +G +G+GK+T + +I PDSG +
Sbjct: 1 LKTNDLTKTYGKKRVLD---DISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAYGKQGGATEEEIIAATEASNA 1158
D K +++G + + P + T R N+ + ++ I
Sbjct: 58 TFDGKS--YQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRID------- 108
Query: 1159 HNFISALPHGYETNVGERGV-QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
L + ++ V S G KQR+ IA A+L NP +L+LDE T+ LD + +
Sbjct: 109 ----EVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKE 164
Query: 1218 VQDALERVMVNRTTVVVA-HRLTTI-KNADIIAVVKNGVIAEQG 1259
+++ + + TV+++ H L+ I K AD I ++ G + E+G
Sbjct: 165 LRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 3e-18
Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 34/206 (16%)
Query: 1063 LSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLD---------NIELPKFKLSW 1113
++P+ AL G SGSGK+++I +I PD G + L+ I LP K
Sbjct: 19 FTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK--- 75
Query: 1114 LRQQMGLVSQEPVLF-NETIRTNIAYGKQGGATEE--EIIAATEASNAHNFISALPHGYE 1170
+++G V Q+ LF + T+R N+ YG + +++A G E
Sbjct: 76 --RRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALL--------------GIE 119
Query: 1171 TNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VN 1228
+ LSGG+KQR+AI RA+L P++LL+DE ++LD +R + LER+ +N
Sbjct: 120 HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEIN 179
Query: 1229 RTTVVVAHRLTTIKN-ADIIAVVKNG 1253
+ V+H L + AD + V++NG
Sbjct: 180 IPILYVSHSLDEVLRLADRVVVLENG 205
|
Length = 352 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (213), Expect = 3e-18
Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 44/229 (19%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLR 1115
+ ++ L++ G+ VA++G +G+GKST++ + PDSG V L+ L + + L
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75
Query: 1116 QQMGLVSQEPVL-FNETIRTNIAYG--------KQGGATEEEIIAATEASN-AHNFISAL 1165
++ ++ Q L F T+ +A G + A +A + ++ A
Sbjct: 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYP-- 133
Query: 1166 PHGYETNVGERGVQLSGGQKQRIAIARAVL-------KNPKILLLDEATSALD-AESERV 1217
QLSGG++QR+ +AR VL P+ LLLDE TSALD A V
Sbjct: 134 -------------QLSGGEQQRVQLAR-VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHV 179
Query: 1218 VQDALERVMVNRTTV-VVAHRLTTIKN-----ADIIAVVKNGVIAEQGS 1260
++ A + V VV H L N AD I ++ G + G+
Sbjct: 180 LRLARQLAHERGLAVIVVLHDL----NLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 3e-18
Identities = 70/239 (29%), Positives = 114/239 (47%), Gaps = 19/239 (7%)
Query: 1035 SVGGAIELRCVSFKYPTRP--DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFY 1092
I L VS+ Y + + + N L+ K ++G +GSGKST+I L
Sbjct: 2 DFSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61
Query: 1093 DPDSGHVLLDNIELP----KFK-LSWLRQQMGLVSQEP--VLFNETIRTNIAYGK-QGGA 1144
++G ++ + +P K K + LR+++GLV Q P LF ETI +IA+G G
Sbjct: 62 ISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGE 121
Query: 1145 TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLD 1204
++E A + + LP Y V +LSGGQK+R+A+A + + L+LD
Sbjct: 122 NKQE--AYKKVPELLKLVQ-LPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLD 175
Query: 1205 EATSALDAESERVVQDALERVMVN--RTTVVVAHRLTTI-KNADIIAVVKNGVIAEQGS 1260
E T LD + E + ER+ + ++V H + + + AD + V+ G + GS
Sbjct: 176 EPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
|
Length = 289 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 3e-18
Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 16/187 (8%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+++ +Y Y +P +L + SG ++G SG GK+T+++L+ F G +
Sbjct: 2 LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQ-EPILFATSLRENIAYGKENA-TDQEIRTAIELANA 492
+DG ++ E+ G+V Q E +L ++++N+A+G + A ++ R I
Sbjct: 59 TLDGKPVEGPG----AER-GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQML 113
Query: 493 AKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIV 552
K GL+ + QLSGGQ+QR+ IARA+ NP++LLLDE ALDA + +
Sbjct: 114 KKV------GLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM 167
Query: 553 QDALVKI 559
Q L+K+
Sbjct: 168 QTLLLKL 174
|
Length = 255 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 4e-18
Identities = 65/213 (30%), Positives = 97/213 (45%), Gaps = 19/213 (8%)
Query: 1055 VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF----K 1110
+ I + + L + G+TVA+VG SGSGKST++A++ DP SG V L L K +
Sbjct: 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82
Query: 1111 LSWLRQQMGLVSQEPVLF-NETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGY 1169
+ + +G V Q L N T N+A +A + A + A+ G
Sbjct: 83 AALRARHVGFVFQSFHLIPNLTALENVALP----LELRGESSADSRAGAKALLEAV--GL 136
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDAL-----ER 1224
+ QLSGG++QR+A+ARA P +L DE T LD + + D L ER
Sbjct: 137 GKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRER 196
Query: 1225 VMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAE 1257
T V+V H D +++G + E
Sbjct: 197 GT---TLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 4e-18
Identities = 65/229 (28%), Positives = 106/229 (46%), Gaps = 39/229 (17%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF------- 1109
I +L LS+P+GK AL+G +G GKST++ R P SG V L + +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 1110 KLSWLRQQMGLVSQEPVLFNETIRTNIAYG---------KQGGATEEEIIAATEASNAHN 1160
+L+ L Q ++ E + T+R +AYG + + A E +
Sbjct: 77 RLALLPQH--HLTPEGI----TVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTR--- 127
Query: 1161 FISALPHGYETNVGERGV-QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQ 1219
I+ L +R + LSGGQ+QR +A + ++ ++LLDE T+ LD + +V
Sbjct: 128 -INHL--------ADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI-NHQVEL 177
Query: 1220 DALERVMVN--RTTVVVAHRLT-TIKNADIIAVVKNGVIAEQGSHDALM 1265
L R + +T V V H L + D + V+ NG + QG+ + +M
Sbjct: 178 MRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (211), Expect = 4e-18
Identities = 67/221 (30%), Positives = 113/221 (51%), Gaps = 19/221 (8%)
Query: 1033 LSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFY 1092
+S + AI++ +SF Y T+ +I + + I K A++G SG GKST + + R
Sbjct: 1 MSKLIPAIKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN 57
Query: 1093 DPDS-----GHVLL--DNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ--GG 1143
+ +S G V NI + L+ LR+Q+ +V +P LF ++ N+AYG + G
Sbjct: 58 ELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGW 117
Query: 1144 ATEEEIIAATEAS-NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILL 1202
+ EI E++ + + H + + + LSGGQ+QR+ IARA+ PK+LL
Sbjct: 118 RPKLEIDDIVESALKDADLWDEIKH----KIHKSALDLSGGQQQRLCIARALAVKPKVLL 173
Query: 1203 LDEATSALDAESERVVQDALE--RVMVNRTTVVVAHRLTTI 1241
+DE LD + V+ ++ R+ T V+V+H L +
Sbjct: 174 MDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 4e-18
Identities = 79/243 (32%), Positives = 118/243 (48%), Gaps = 45/243 (18%)
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL---QLKWIRE 451
F+L G T LVG+SGSGKST + R GE+ DG + L QL +R
Sbjct: 306 SFTLR--PGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRH 362
Query: 452 KIGLVSQEPILFATSL--REN----IAYGKE------NATDQEIRTAIELANAAKFIDKL 499
+I +V Q+P +SL R N I G +A +E + +
Sbjct: 363 RIQVVFQDP---NSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEV------- 412
Query: 500 PKGLDTMAGEH--GTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD--- 554
GLD H + SGGQ+QRIAIARA++ P +++LDE TS+LD + VQ
Sbjct: 413 --GLDP-ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD----KTVQAQIL 465
Query: 555 ALVKIMTSR---TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYT-QL 609
AL+K + + + ++H L +R + V+ QG++VE+G + + P+ YT QL
Sbjct: 466 ALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYTRQL 525
Query: 610 VRL 612
+ L
Sbjct: 526 LAL 528
|
Length = 529 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 4e-18
Identities = 62/208 (29%), Positives = 103/208 (49%), Gaps = 27/208 (12%)
Query: 398 LHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDG---IDI-KKLQLKWIREKI 453
L +P+ A+ G+SG+GK+++I+ + P G ++++G D K + L + +I
Sbjct: 19 LTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRI 78
Query: 454 GLVSQEPILFA-TSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGT 512
G V Q+ LF +R N+ YG + + + L +D+ P
Sbjct: 79 GYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------G 127
Query: 513 QLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDAL------VKIMTSRTTV 566
LSGG+KQR+AI RA+L P++LL+DE ++LD +R + L + I +
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINI----PIL 183
Query: 567 VVAHRLTTI-RNADLIAVVHQGKIVEKG 593
V+H L I R AD + V+ QGK+ G
Sbjct: 184 YVSHSLDEILRLADRVVVLEQGKVKAFG 211
|
Length = 352 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 5e-18
Identities = 59/182 (32%), Positives = 100/182 (54%), Gaps = 10/182 (5%)
Query: 1065 IPSGKTVALVGESGSGKSTVIALIERFYD--PD---SGHVLLDNIEL-PKFKLS-WLRQQ 1117
I S A++G SG GKST + I R D P +G ++ D ++ KF LR++
Sbjct: 62 ILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKK 121
Query: 1118 MGLVSQEPVLFNETIRTNIAYG-KQGGATEEEIIAATEASNAHNFISALPHGYETNVGER 1176
+G+V Q+P F ++I NIAYG + G +++ + + +AL + +
Sbjct: 122 IGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRK--AALWDEVSDRLDKN 179
Query: 1177 GVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAH 1236
+ LSGGQ+QR+ +AR + P+ILLLDE TSALD ++ ++D ++ + + T ++V H
Sbjct: 180 ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTH 239
Query: 1237 RL 1238
+
Sbjct: 240 NM 241
|
Length = 286 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 5e-18
Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 23/186 (12%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDN- 1103
+ Y +P ++ L++ SG+ + ++G SG GK+T++ LI F G + LD
Sbjct: 7 LYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGK 63
Query: 1104 -IELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ--GGATEEEIIAATEASNAHN 1160
+E P + + Q GL+ V N+A+G Q G + + A +
Sbjct: 64 PVEGPGAERGVVFQNEGLLPWRNVQ------DNVAFGLQLAGVEKMQRLEIAHQMLKKVG 117
Query: 1161 FISALPHGYETNVGERGV-QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQ 1219
A +R + QLSGGQ+QR+ IARA+ NP++LLLDE ALDA + +Q
Sbjct: 118 LEGA---------EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQ 168
Query: 1220 DALERV 1225
L ++
Sbjct: 169 TLLLKL 174
|
Length = 255 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 5e-18
Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 26/223 (11%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW-I 449
I G SL VP G ++G++G GK+T++ + +G + +DG DI KL
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA 73
Query: 450 REKIGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDK----LPKGLD 504
R I V Q +F ++ EN+ G L ++ I L L
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLTGLAA-----------LPRRSRKIPDEIYELFPVLK 122
Query: 505 TMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD---ALVKIMT 561
M G G LSGGQ+Q++AIARA++ PK+LLLDE T + I++D + ++
Sbjct: 123 EMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPS---IIKDIGRVIRRLRA 179
Query: 562 SR--TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601
++V L R AD V+ +G++V G DEL +D
Sbjct: 180 EGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDED 222
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 6e-18
Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 52/206 (25%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVL-------LDNIELPK 1108
+ +N+ L++ +G+ VAL G SG+GKST++ + Y PDSG +L +D +
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 1109 FKLSWLRQQ-MGLVSQ---------------EPVLFNETIRTNIAYGKQGGATEEEIIAA 1152
++ +R++ +G VSQ EP+L + G E A
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLL-------------ERGVPREAARAR 128
Query: 1153 TEASNAHNFISALPHGYETNVGERGVQL-----SGGQKQRIAIARAVLKNPKILLLDEAT 1207
A N+ ER L SGG++QR+ IAR + + ILLLDE T
Sbjct: 129 ARELLAR-----------LNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPT 177
Query: 1208 SALDAESERVVQDALERVMVNRTTVV 1233
++LDA + +VV + + ++
Sbjct: 178 ASLDAANRQVVVELIAEAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 6e-18
Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 19/191 (9%)
Query: 386 ARPEVQIF-AGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL 444
P+ Q + + V G + G+SG+GK++++ + + +G + +
Sbjct: 401 RTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA------ 454
Query: 445 QLKWIREKIGLVSQEPILFATSLRENIAY--GKENATDQEIRTAIELANAAKFIDKLPKG 502
+ + Q P L +LRE + Y + +D E+ + ++L
Sbjct: 455 -----DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL-DE 508
Query: 503 LDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS 562
D LSGG++QR+A AR +L PK + LDEATSALD E+E + L + +
Sbjct: 509 EDRWDRV----LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPD 564
Query: 563 RTTVVVAHRLT 573
T + V HR T
Sbjct: 565 ATVISVGHRPT 575
|
Length = 604 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.3 bits (208), Expect = 7e-18
Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 14/222 (6%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD-----SGHVLLD--NIEL 1106
D Q +N+ L + G AL+G SG GK+T + I R +D +G +LLD +I
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75
Query: 1107 PKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYGKQ--GGATEEEIIAATEASNAHNFIS 1163
P+ +R+++G+V Q+P F ++ N+ G + G + ++ E S +
Sbjct: 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRG---A 132
Query: 1164 ALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALE 1223
AL + + LSGGQ+QR+ IARA+ P+ILL+DE TSALD S ++D +
Sbjct: 133 ALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMT 192
Query: 1224 RVMVNRTTVVVAHRL-TTIKNADIIAVVKNGVIAEQGSHDAL 1264
+ T ++V H + + +D + G + E G D L
Sbjct: 193 DLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234
|
Length = 252 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 7e-18
Identities = 54/190 (28%), Positives = 96/190 (50%), Gaps = 17/190 (8%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLI----DGIDIKKL 444
+ + SL V +G AL G SG+GKST++ + Y PD+G +L+ +D+ +
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 445 ---QLKWIREK-IGLVSQ-EPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKL 499
++ +R K IG VSQ ++ S E +A E ++ + A A + + +L
Sbjct: 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVA---EPLLERGVPREAARARARELLARL 136
Query: 500 --PKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALV 557
P+ L + SGG++QR+ IAR + + ILLLDE T++LDA + ++V + +
Sbjct: 137 NIPERLWHLPP---ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIA 193
Query: 558 KIMTSRTTVV 567
+ ++
Sbjct: 194 EAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 7e-18
Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 28/230 (12%)
Query: 393 FAGF------SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL 446
F GF SL+V G ++G +G+GK+T++ ++ PD G VL G D+ L
Sbjct: 12 FDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPE 71
Query: 447 KWI-REKIGLVSQEPILF-ATSLREN--IAYGKE--------NATDQEIRTAIELANAAK 494
I R IG Q+P +F ++ EN +A ++ E + IE +
Sbjct: 72 HQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIE--EVLE 129
Query: 495 FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL-DAESERIVQ 553
I + D +AG LS GQKQ + I ++++PK+LLLDE + + D E+E+
Sbjct: 130 TIGLADE-ADRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA- 183
Query: 554 DALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDP 602
+ L + + VVV H + +R+ AD + V+HQG ++ +G+ D++ DP
Sbjct: 184 ELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQADP 233
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 8e-18
Identities = 69/321 (21%), Positives = 132/321 (41%), Gaps = 39/321 (12%)
Query: 948 GFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKV--FFALTISALG--VSQTSAMAPDT 1003
F + + I + G+ TFG + + F S+L + A+A
Sbjct: 294 WFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIA--- 350
Query: 1004 TKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRC-----VSFKYPT--RPDVQ 1056
D A++ + + + +++++ + + G I+ ++ + + PD Q
Sbjct: 351 ----DWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQ 406
Query: 1057 IF-RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLR 1115
L + G+ + + GESG+GK++++ + + SG I +P
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSG-----RISMPADSALL-- 459
Query: 1116 QQMGLVSQEPVLFNETIRTNIAY-GKQGGATEEEIIAATEASNAHNFISALPHGYETNVG 1174
+ Q P L T+R + Y ++ E++A + L
Sbjct: 460 ----FLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL-----DEED 510
Query: 1175 ERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVV 1234
LSGG++QR+A AR +L PK + LDEATSALD E+E + L+ + + T + V
Sbjct: 511 RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISV 570
Query: 1235 AHRLTTIKN--ADIIAVVKNG 1253
HR T+ N + + ++ +
Sbjct: 571 GHR-PTLWNFHSRQLELLDDA 590
|
Length = 604 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (210), Expect = 8e-18
Identities = 63/219 (28%), Positives = 118/219 (53%), Gaps = 26/219 (11%)
Query: 398 LHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDI----KKLQLKWIREKI 453
L V G+ AL+G +GSGKST++ + P G+V + I + K+ ++K +R+K+
Sbjct: 27 LEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKV 86
Query: 454 GLVSQEP--ILFATSLRENIAYGKEN---ATDQEIRTAIE----LANAAKFIDKLPKGLD 504
G+V Q P LF ++ +++A+G +N ++ + A E + A +F +K P
Sbjct: 87 GVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSP---- 142
Query: 505 TMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKI-MTSR 563
+LSGGQ +R+AIA + P++L+LDE T+ LD ++ + I + +
Sbjct: 143 -------FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQ 195
Query: 564 TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601
T V+V H + + + AD + ++ +G I+ GT ++ ++
Sbjct: 196 TVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
Length = 288 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 1e-17
Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 30/220 (13%)
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLD--NIE-LPKFKLSWLR 1115
++ L + G+ V L+G +G+GK+T+ LI FY P SG V+ +I LP +
Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHR----I 76
Query: 1116 QQMGLVS--QEPVLF-NETIRTNIAYGKQ-----------GGATEEEIIAATEASNAHNF 1161
++G+ Q LF T+ N+A G A +EE A A F
Sbjct: 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 1162 ISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA-ESERVVQD 1220
+ L + G LS GQ++R+ IARA+ PK+LLLDE + L+ E+E + +
Sbjct: 137 VG-LGELADRPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL 191
Query: 1221 ALE-RVMVNRTTVVVAHRLTTIKN-ADIIAVVKNG-VIAE 1257
E R T +++ H + + AD I V+ G VIAE
Sbjct: 192 IRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231
|
Length = 250 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 1e-17
Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 21/190 (11%)
Query: 1063 LSIPSGKTVALVGESGSGKSTVIALIERFYD--PDS---GHVLLD--NIELPKFKLSWLR 1115
L+I A +G SG GKSTV+ + R ++ P + G VLLD ++ P +R
Sbjct: 25 LNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVR 84
Query: 1116 QQMGLVSQEPVLF-NETIRTNIAYGK--QGGATEEEIIAATEAS----NAHNFISALPHG 1168
+ +G+V Q P F +IR N+ G G ++++ E S N N +
Sbjct: 85 RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV------ 138
Query: 1169 YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN 1228
+ + + G LSGGQ+QR+ IARA+ P +LL+DE SALD S ++D + + +
Sbjct: 139 -KDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQD 197
Query: 1229 RTTVVVAHRL 1238
T V+V H +
Sbjct: 198 YTIVIVTHNM 207
|
Length = 258 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 1e-17
Identities = 73/242 (30%), Positives = 110/242 (45%), Gaps = 35/242 (14%)
Query: 1042 LRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLL 1101
LR VSF+ P R + L L+ P+GK L+G +GSGKST++ ++ R P G +LL
Sbjct: 14 LRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 1102 DNIELPKFK-LSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ--GGA-----------TEE 1147
D L + ++ R+ L Q P T+R +A G+ GA EE
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130
Query: 1148 EIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEAT 1207
I AH + + LSGG++QR IA V ++ + LLLDE T
Sbjct: 131 AISLVGLKPLAHRLVDS---------------LSGGERQRAWIAMLVAQDSRCLLLDEPT 175
Query: 1208 SALDAESERVVQDALERVMVNR--TTVVVAHRLT-TIKNADIIAVVKNGVIAEQGSHDAL 1264
SALD + V + R+ R T + V H + + D + ++ G + QG+ L
Sbjct: 176 SALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
Query: 1265 MK 1266
M+
Sbjct: 236 MR 237
|
Length = 265 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 1e-17
Identities = 72/242 (29%), Positives = 107/242 (44%), Gaps = 33/242 (13%)
Query: 384 YPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD----AGEVLIDGI 439
A+P V G SL + G ALVG SGSGKS + AG VL+DG
Sbjct: 13 QAAQPLV---HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69
Query: 440 DIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKEN-------ATDQEIRTAIE---L 489
+ L+ KI + Q P L + +E A D + A+E L
Sbjct: 70 PVAPCALRGR--KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGL 127
Query: 490 ANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESE 549
NAA+ + P ++SGG QR+ IA A+L ++ DE T+ LD ++
Sbjct: 128 ENAARVLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQ 176
Query: 550 RIVQDALVKIMTSRT--TVVVAHRLTTI-RNADLIAVVHQGKIVEKGTHDELIKDPEGPY 606
+ D L I+ R ++V H + + R AD +AV+ G+IVE+G + L P+
Sbjct: 177 ARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAV 236
Query: 607 TQ 608
T+
Sbjct: 237 TR 238
|
Length = 254 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 2e-17
Identities = 66/229 (28%), Positives = 104/229 (45%), Gaps = 34/229 (14%)
Query: 1061 LCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK---------- 1110
L S+ +G+ VAL+G SGSGKST++ ++ D G + ++ +L
Sbjct: 19 LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78
Query: 1111 ---LSWLRQQMGLVSQEPVLF-------NETIRTNIAYGKQGGATEEEIIAATEASNAHN 1160
L +R ++G+V Q LF N T + G E+ + + +
Sbjct: 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD 138
Query: 1161 FISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQD 1220
+P QLSGGQ+QR+AIARA+ PK++L DE TSALD E V +
Sbjct: 139 KADHMP-----------AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN 187
Query: 1221 ALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266
+ R+ + T ++V H + + AD + G I EQG D + +
Sbjct: 188 VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR 236
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 2e-17
Identities = 68/234 (29%), Positives = 109/234 (46%), Gaps = 61/234 (26%)
Query: 1064 SIPSGKTVALVGESGSGKSTV---IALIERFYDPDSGHVLLDNIEL---PKFKLSWLRQQ 1117
++ GKT+A+VGESG GKST+ + +IE P G + +L LRQ+
Sbjct: 37 TLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDLLKADPEAQKLLRQK 93
Query: 1118 MGLVSQEPVLFNETIRTNIAYG------KQGGATEEEIIAATEASNAHNFISAL------ 1165
+ +V Q P YG K G EE ++ T S A AL
Sbjct: 94 IQIVFQNP------------YGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKV 141
Query: 1166 ----------PHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD---- 1211
PH + SGGQ+QRIAIARA++ +P +++ DE SALD
Sbjct: 142 GLRPEHYDRYPHMF-----------SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQ 190
Query: 1212 AESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264
A+ ++ D L++ + + V ++H L+ +++ AD + V+ G E+G+ + +
Sbjct: 191 AQVLNLMMD-LQQEL-GLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242
|
Length = 327 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 2e-17
Identities = 67/233 (28%), Positives = 109/233 (46%), Gaps = 35/233 (15%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKS-TVIALIERFYDPD----SGHVLLDNIELPKFK 1110
+ ++ L I +G+T+ALVGESGSGKS T ++++ P SG + L
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82
Query: 1111 LSWLRQ----QMGLVSQEP-VLFN--ETIRTNIA------YGKQGGATEEEIIAATE--- 1154
LR ++ ++ QEP V N T+ + G + A EI+ +
Sbjct: 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVG 142
Query: 1155 ASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAES 1214
A ++ PH QLSGG++QR+ IA A+L P++L+ DE T+ALD
Sbjct: 143 IRQAAKRLTDYPH-----------QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSV 191
Query: 1215 ERVVQDALE--RVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264
+ + L + +N + + H L+ ++ AD +AV++NG EQ L
Sbjct: 192 QAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL 244
|
Length = 529 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 2e-17
Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 24/229 (10%)
Query: 375 IELRDVYFRYPARPE-VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
+EL+D+ YP+ E V++ G SL + +G A+VG SGSGKST+++++ P +G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 434 VLIDGIDIKKL------QLKWIREKIGLVSQE----PILFATSLRENIAYGKENATDQEI 483
+ G D+ L QL+ RE G + Q L A E A Q +
Sbjct: 65 YRVAGQDVATLDADALAQLR--REHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRL 122
Query: 484 RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSA 543
A EL + +L GL+ +QLSGGQ+QR++IARA++ +++L DE T A
Sbjct: 123 LRAQEL------LQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGA 174
Query: 544 LDAESERIVQDALVKIMTSR--TTVVVAHRLTTIRNADLIAVVHQGKIV 590
LD+ S V A++ + R T ++V H A+ + + G+IV
Sbjct: 175 LDSHSGEEVM-AILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 2e-17
Identities = 60/238 (25%), Positives = 99/238 (41%), Gaps = 38/238 (15%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
L+ + E S + G ++G +G+GKST++ L+ Y P +G+V
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 435 LIDGIDIKKLQLKWIREKIGL-VSQEPILFATSLRENI-AYG-----KENATDQEIRTAI 487
+ G ++ + I L +P L + RENI G D+++ I
Sbjct: 85 KVTG------KVAPL---IELGAGFDPEL---TGRENIYLRGLILGLTRKEIDEKVDEII 132
Query: 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
E A FID+ K S G R+A + A P ILLLDE + DA
Sbjct: 133 EFAELGDFIDQPVKT-----------YSSGMYARLAFSVATHVEPDILLLDEVLAVGDA- 180
Query: 548 SERIVQDALVKIMT----SRTTVVVAHRLTTIRNA-DLIAVVHQGKIVEKGTHDELIK 600
+ L ++ ++T V+V+H L I+ D + G+I +G+ +E+I
Sbjct: 181 --AFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236
|
Length = 249 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 2e-17
Identities = 60/194 (30%), Positives = 99/194 (51%), Gaps = 16/194 (8%)
Query: 407 ALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILF--A 464
A +G +G+GK+T +S++ P +G VL+ G DI+ L +R+ +G+ Q ILF
Sbjct: 960 AFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHHL 1018
Query: 465 TSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAI 524
T + Y + E +L A D GL E LSGG ++++++
Sbjct: 1019 TVAEHILFYAQLKGRSWE---EAQLEMEAMLEDT---GLHHKRNEEAQDLSGGMQRKLSV 1072
Query: 525 ARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADL---- 580
A A + + K+++LDE TS +D S R + D L+K + RT ++ H + ADL
Sbjct: 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMD---EADLLGDR 1129
Query: 581 IAVVHQGKIVEKGT 594
IA++ QG++ GT
Sbjct: 1130 IAIISQGRLYCSGT 1143
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 2e-17
Identities = 69/240 (28%), Positives = 121/240 (50%), Gaps = 26/240 (10%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
I+L V Y + V G S V SG L+G +G+GKST+ ++ PDAG++
Sbjct: 42 IDLAGVSKSYGDKAVVN---GLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPIL-FATSLREN-IAYGKE-NATDQEIRTAI-ELA 490
+ G+ + + + R +IG+V Q L ++REN + +G+ + +EI I L
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLL 157
Query: 491 NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER 550
A+ L++ A + LSGG K+R+ +ARA++ +P++L+LDE T+ LD +
Sbjct: 158 EFAR--------LESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARH 209
Query: 551 IVQDALVKIMTSRTTVVVAHRLTT------IRNADLIAVVHQGKIVEKGTHDELIKDPEG 604
++ + L ++ T++ LTT R D + V+ G+ + +G LI + G
Sbjct: 210 LIWERLRSLLARGKTIL----LTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIG 265
|
Length = 340 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 82.1 bits (204), Expect = 3e-17
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 21/214 (9%)
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118
++ S+ G+ L+G +G+GK+T+ LI F P SG VL D ++ ++
Sbjct: 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLP-PHEIARL 75
Query: 1119 GLVS--QEPVLFNE-TIRTNI---AYGKQGGATEEEIIAATEAS---NAHNFISA--LPH 1167
G+ Q P LF E T+ N+ A + G E A + L
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD 135
Query: 1168 GYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL-DAESERVVQDALERVM 1226
+ GE LS GQ++R+ IARA+ +PK+LLLDE + L E+E + + + +
Sbjct: 136 LADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA-ELIRELR 190
Query: 1227 V-NRTTVVVAHRLTTIKN-ADIIAVVKNG-VIAE 1257
T ++V H + + + AD + V+ G VIAE
Sbjct: 191 ERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE 224
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 3e-17
Identities = 57/209 (27%), Positives = 90/209 (43%), Gaps = 25/209 (11%)
Query: 1064 SIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ----QMG 1119
+ P G L+G +GSGKST++ L+ PD+G V L ++L R+ ++
Sbjct: 23 TAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDL----HGLSRRARARRVA 78
Query: 1120 LVSQE-PVLFNETIRTNIAYGKQ------GGATEEEIIAATEASNAHNFISALPHGYETN 1172
LV Q+ T+R +A G+ G + + A T
Sbjct: 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMST- 137
Query: 1173 VGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTV 1232
LSGG++QR+ +ARA+ + PK+LLLDE T+ LD ++ + + TV
Sbjct: 138 -------LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTV 190
Query: 1233 VVA-HRLT-TIKNADIIAVVKNGVIAEQG 1259
V A H L D + V+ G + G
Sbjct: 191 VAALHDLNLAASYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 3e-17
Identities = 76/282 (26%), Positives = 133/282 (47%), Gaps = 41/282 (14%)
Query: 993 VSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTR 1052
V++ + + + + I E S P ++S+V AI+L VS Y +
Sbjct: 6 VAEEAPRRLELSPIERKHQGISEAKASIP---------GSMSTV--AIDLAGVSKSYGDK 54
Query: 1053 PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLS 1112
V L ++ SG+ L+G +G+GKST+ +I PD+G + + + +P +
Sbjct: 55 AVVN---GLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPA-RAR 110
Query: 1113 WLRQQMGLVSQEPVLFNE-TIRTN-IAYGKQGGATEEEIIAATEASNAHNFISALPH--G 1168
R ++G+V Q L E T+R N + +G+ G + EI A I +L
Sbjct: 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV---------IPSLLEFAR 161
Query: 1169 YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN 1228
E+ R LSGG K+R+ +ARA++ +P++L+LDE T+ LD + ++ + L ++
Sbjct: 162 LESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 221
Query: 1229 RTTVVV-------AHRLTTIKNADIIAVVKNGV-IAEQGSHD 1262
T+++ A RL D + V++ G IAE H
Sbjct: 222 GKTILLTTHFMEEAERL-----CDRLCVLEAGRKIAEGRPHA 258
|
Length = 340 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 3e-17
Identities = 60/220 (27%), Positives = 93/220 (42%), Gaps = 44/220 (20%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKST---VISLVERFYDPDAGEVLIDGIDIKKLQ 445
+I G +L + G AL+G +GSGKST I + Y+ GE+L G DI L
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK-YEVTEGEILFKGEDITDLP 70
Query: 446 LKWI-REKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLD 504
+ R I L Q P I A F+ + +G
Sbjct: 71 PEERARLGIFLAFQYPP------------------------EIPGVKNADFLRYVNEGF- 105
Query: 505 TMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRT 564
SGG+K+R I + +L P + +LDE S LD ++ R+V + + K+
Sbjct: 106 ----------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155
Query: 565 TV-VVAH--RLTTIRNADLIAVVHQGKIVEKGTHDELIKD 601
+V ++ H RL D + V++ G+IV+ G EL +
Sbjct: 156 SVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGD-KELALE 194
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 4e-17
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 15/210 (7%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW 1113
V ++ S+ G+ L+G +G+GK+T I +I PDSG VL D K
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG----KPLDIA 67
Query: 1114 LRQQMGLVSQEPVLF-NETIRTNIAY-GKQGGATEEEIIAATEASNAHNFISALPHGYET 1171
R ++G + +E L+ + + Y + G +EE ++ L
Sbjct: 68 ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERL--ELSE 120
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTT 1231
+R +LS G +Q++ AV+ +P++L+LDE S LD + +++D + + T
Sbjct: 121 YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT 180
Query: 1232 VV-VAHRLTTIKN-ADIIAVVKNGVIAEQG 1259
V+ H++ ++ D + ++ G G
Sbjct: 181 VILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 13/223 (5%)
Query: 393 FAGF------SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDG-IDIKKLQ 445
F GF S V G L+G +G+GK+T++ ++ P GEVL DG D+ KL
Sbjct: 15 FGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP 74
Query: 446 LKWI-REKIGLVSQEPILF-ATSLREN--IAYGKENATDQEIRTAIELANAAKFIDKLPK 501
I R IG Q+P +F ++REN +A ++ + + + + + L
Sbjct: 75 EHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLAT 134
Query: 502 -GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM 560
GL LS GQKQ + I + ++PK+LLLDE + + + L +
Sbjct: 135 IGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA 194
Query: 561 TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDP 602
+ +VV H + +R AD + V+H+G ++ +G+ DE+ DP
Sbjct: 195 GKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237
|
Length = 249 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 5e-17
Identities = 64/236 (27%), Positives = 109/236 (46%), Gaps = 26/236 (11%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDI------- 441
E+ S ++G SGSGKST+++ G + + I I
Sbjct: 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97
Query: 442 --------KKLQ-LKWIREKIGLVSQEP--ILFATSLRENIAYGKENATDQEIRTAIELA 490
KK++ K +R ++ +V Q P LF ++ ++I +G ++
Sbjct: 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---K 154
Query: 491 NAAKFIDKLPKGLDTMAGEHGT-QLSGGQKQRIAIARAILKNPKILLLDEATSALDAESE 549
A +++K+ GLD E LSGGQK+R+AIA + P+IL+ DE T+ LD + E
Sbjct: 155 LAKFYLNKM--GLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE 212
Query: 550 R-IVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPE 603
++Q L ++T V+ H + + AD + V+ +GKI++ GT E+ D
Sbjct: 213 HEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQH 268
|
Length = 320 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 6e-17
Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 11/215 (5%)
Query: 386 ARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA---GEVLIDGIDIK 442
+I SLHV SG A++G SGSGK+T++ + + G++L +G K
Sbjct: 16 WNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK 75
Query: 443 KLQLKWIREKIGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDKLPK 501
Q + + + V Q+ IL ++RE + Y ++ AI + +
Sbjct: 76 PDQFQ---KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRD-L 131
Query: 502 GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT 561
L + G +SGG+++R++IA +L +PK+L+LDE TS LD+ + + L ++
Sbjct: 132 ALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR 191
Query: 562 SRTTVVVA-H--RLTTIRNADLIAVVHQGKIVEKG 593
V++ H R R D I ++ G+IV G
Sbjct: 192 RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 6e-17
Identities = 59/182 (32%), Positives = 91/182 (50%), Gaps = 28/182 (15%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
++L+ V Y + Q+ G L V G LVG SG GKST++ +V +GE+
Sbjct: 4 LKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI 61
Query: 435 LIDGIDIKKLQLKWIREK-IGLVSQEPILFA-TSLRENIAYGKENA--TDQEIRTAIELA 490
I G + +L+ ++ I +V Q L+ S+REN+AYG + EI +
Sbjct: 62 WIGGRVVNELEPA---DRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVA-- 116
Query: 491 NAAK------FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
AA+ +D+ P+ +LSGGQ+QR+A+ RAI++ P + L DE S L
Sbjct: 117 EAARILELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNL 165
Query: 545 DA 546
DA
Sbjct: 166 DA 167
|
Length = 356 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (202), Expect = 7e-17
Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 14/231 (6%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
I L VS+ YP N+ L I G+ + ++G++GSGKST+ + P G V
Sbjct: 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 1100 LLDNIELPKF-KLSWLRQQMGLVSQEP--VLFNETIRTNIAYGKQGGATEE-EIIAATEA 1155
L+ I+ F KL +R+ +G+V Q P T+ ++A+G + EI +
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119
Query: 1156 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE 1215
+ A + H LSGGQ Q +A+A + P+ L+ DE TS LD +S
Sbjct: 120 ALAEIGLEKYRHRSPKT-------LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG 172
Query: 1216 RVVQDALERVMVN-RTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 1265
V + ++++ +T V + H L + +AD I V+ G I +G + ++
Sbjct: 173 IAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223
|
Length = 274 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (202), Expect = 7e-17
Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 19/202 (9%)
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG-------HVLLDNIELPKFKL 1111
R+ + I + +G SG GKSTV+ + R D G H L ++
Sbjct: 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84
Query: 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYG----KQGGATEEEIIAATEASNAHNFISALPH 1167
+R+ +G+V Q+P F+ +I N+A+G + G + + A + + AL
Sbjct: 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGA-------ALWD 137
Query: 1168 GYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV 1227
+ + G+ LSGGQ+QR+ IARA+ P++LLLDE SALD + R V++ + +
Sbjct: 138 EVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK 197
Query: 1228 NRTTVVVAHRL-TTIKNADIIA 1248
+ T +V H + I+ AD A
Sbjct: 198 DYTIALVTHNMQQAIRVADTTA 219
|
Length = 261 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 9e-17
Identities = 61/236 (25%), Positives = 112/236 (47%), Gaps = 28/236 (11%)
Query: 1040 IELRCVSFKYPTRPDVQ---IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS 1096
I+ + VS+KY + + ++ L + G+ + ++G +GSGKST+ + P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 1097 GHVLLDNIELPKFKLSW-LRQQMGLVSQEPVLFNETIRT----NIAYGKQG-GATEEEII 1150
G V +D ++ + W +R + G+V Q P N+ + T ++A+G + G EEI
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPD--NQIVATIVEEDVAFGPENLGIPPEEIR 122
Query: 1151 A----ATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEA 1206
+ + + + PH LSGGQKQR+AIA + P+ ++ DE
Sbjct: 123 ERVDESLKKVGMYEYRRHAPH-----------LLSGGQKQRVAIAGILAMRPECIIFDEP 171
Query: 1207 TSALDAESERVVQDALERVMVNR--TTVVVAHRLTTIKNADIIAVVKNGVIAEQGS 1260
T+ LD R V + ++ + T +++ H + AD I V+ +G + +G+
Sbjct: 172 TAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 78.2 bits (194), Expect = 1e-16
Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 70/224 (31%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+ELR ++ ++ V+ + LS+ G+ AL+GE+G+GKST++ ++ Y PDSG +
Sbjct: 1 LELRGITKRFG---GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAH 1159
L+D + V F
Sbjct: 58 LVDG--------------------KEVSFASPRD-------------------------- 71
Query: 1160 NFISALPHGYET----NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL-DAES 1214
A G +VGER Q + IARA+ +N ++L+LDE T+AL AE
Sbjct: 72 ----ARRAGIAMVYQLSVGER---------QMVEIARALARNARLLILDEPTAALTPAEV 118
Query: 1215 ERVVQDALERVMVNRTTVV-VAHRLTTIKN-ADIIAVVKNGVIA 1256
ER+ + R+ V+ ++HRL + AD + V+++G +
Sbjct: 119 ERLF-KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 1e-16
Identities = 58/231 (25%), Positives = 117/231 (50%), Gaps = 21/231 (9%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+++ +++ Y + + ++I G+ A++G +G+GKST+ + P SG +
Sbjct: 6 LKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 1100 LLDN--IELPKFKLSWLRQQMGLVSQEP--VLFNETIRTNIAYGKQG-GATEEEIIAATE 1154
L D I+ + L LR+ +G+V Q+P LF+ ++ ++++G E+E+ +
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 1155 ASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD--- 1211
+ I L T+ LS GQK+R+AIA ++ PK+L+LDE T+ LD
Sbjct: 124 NALKRTGIEHLKDK-PTHC------LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
Query: 1212 -AESERVVQDALERVMVNRTTVVVAHRLTTIK-NADIIAVVKNGVIAEQGS 1260
+E +++ + + + + T ++ H + + D + V+K G + QG+
Sbjct: 177 VSEIMKLLVEMQKELGL--TIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 225
|
Length = 283 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 1e-16
Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 32/217 (14%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
SL VP + L+G +G+GKST++ ++ P +GE++ DG + L
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLH---- 70
Query: 452 KIGLVSQEPILFAT-SLRENIAY-----GKENATDQEIRTAIELANAAKFIDKLPKGLDT 505
KIG + + P L+ + REN+ G ++ E+ ++L N K
Sbjct: 71 KIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTN----TGKKKAK--- 123
Query: 506 MAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD--ALVKIMTSR 563
Q S G KQR+ IA A+L +PK+L+LDE T+ LD +Q+ L++ +
Sbjct: 124 -------QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG---IQELRELIRSFPEQ 173
Query: 564 TTVVV--AHRLTTIRN-ADLIAVVHQGKIVEKGTHDE 597
V+ +H L+ ++ AD I ++ +G + +G ++
Sbjct: 174 GITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 25/219 (11%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKST---VISLVERFYDPDAGEVLIDGIDIKKLQLK 447
+I G +L V G A++G +GSGKST I + Y+ GE+L DG DI +L
Sbjct: 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELS-- 74
Query: 448 WIREK----IGLVSQEPILF-----ATSLRENIAYGKENATDQEIRTAI-ELANAAKFID 497
E+ I L Q P+ + LR A + I EL A+ +
Sbjct: 75 -PDERARAGIFLAFQYPVEIPGVTNSDFLR--AAMNARRGARGILPEFIKELKEKAELLG 131
Query: 498 KLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALV 557
+ L+ E SGG+K+R I + +L PK+ +LDE S LD ++ +IV + +
Sbjct: 132 LDEEFLERYVNE---GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGIN 188
Query: 558 KIMTS-RTTVVVAH--RLTTIRNADLIAVVHQGKIVEKG 593
+ R +++ H RL D + V++ G+IV+ G
Sbjct: 189 ALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 79.4 bits (197), Expect = 2e-16
Identities = 59/229 (25%), Positives = 105/229 (45%), Gaps = 37/229 (16%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW 1113
QI + L++P G+ VAL+G +G+GK+T++ I P SG + D ++
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP-PH 70
Query: 1114 LRQQMGL--VSQEPVLFNE-TIRTNI---AYGKQGGATEEEIIAATEASNAHNFISALPH 1167
R + G+ V + +F E T+ N+ AY ++ + +
Sbjct: 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERV--------------- 115
Query: 1168 GYET--NVGER----GVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDA 1221
YE + ER LSGG++Q +AIARA++ PK+LLLDE + L + ++V++
Sbjct: 116 -YELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEI 171
Query: 1222 LERVM-VNR---TTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265
E + + T ++V AD V++ G + +G+ L+
Sbjct: 172 FEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.4 bits (198), Expect = 2e-16
Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 13/216 (6%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLD--NIEL 1106
+ + ++ + I AL+G SG GKST + I R D G +L + NI
Sbjct: 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92
Query: 1107 PKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG-KQGGATEEEII-AATEASNAHNFISA 1164
+ LR+++G+V Q+P F ++I NI + K G + ++ E S +A
Sbjct: 93 SNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTK---AA 149
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224
L + + + LSGGQ+QR+ IAR + P +LLLDE SALD S +++ +
Sbjct: 150 LWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITE 209
Query: 1225 VMVNRTTVVVAHRL-TTIKNADIIAVVKNGVIAEQG 1259
+ + ++V H + ++ +D A NG + E
Sbjct: 210 LKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245
|
Length = 268 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 2e-16
Identities = 73/249 (29%), Positives = 117/249 (46%), Gaps = 39/249 (15%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+++R VSF TR + IF N+ L++P GK A++G SG GK+T++ LI PD G +
Sbjct: 8 VDMRGVSF---TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 1100 LLDNIELPKFKLSWL---RQQMGLVSQEPVLFNE-TIRTNIAYG-KQGGATEEEIIAAT- 1153
L D +P S L R++M ++ Q LF + + N+AY ++ ++ +T
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV 124
Query: 1154 ----EASNAHNFISALPHGYETNVGERGV------QLSGGQKQRIAIARAVLKNPKILLL 1203
EA VG RG +LSGG +R A+ARA+ P +++
Sbjct: 125 MMKLEA-----------------VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMF 167
Query: 1204 DEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
DE D + V+ + + + T VVV+H + + + AD +V + I GS
Sbjct: 168 DEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGS 227
Query: 1261 HDALMKITD 1269
AL D
Sbjct: 228 AQALQANPD 236
|
Length = 269 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 2e-16
Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 27/214 (12%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116
N+ L++P L+G +G+GKST++ +I P SG ++ D W R+
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP-------WTRK 67
Query: 1117 QM---GLVSQEPVLF-NETIRTNI-AYGKQGGATEEEIIAATEASNAHNFISALPHGYET 1171
+ G + + P L+ N T R N+ + G + I + T
Sbjct: 68 DLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDL------------T 115
Query: 1172 NVGERGV-QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRT 1230
N G++ Q S G KQR+ IA A+L +PK+L+LDE T+ LD + +++ +
Sbjct: 116 NTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGI 175
Query: 1231 TVVV-AHRLTTIKN-ADIIAVVKNGVIAEQGSHD 1262
TV++ +H L+ ++ AD I ++ GV+ QG +
Sbjct: 176 TVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 59/199 (29%), Positives = 96/199 (48%), Gaps = 32/199 (16%)
Query: 1031 MTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIER 1090
M L +L CV R +F L ++ +G+ + L G +GSGK+T++ LI
Sbjct: 1 MMLE----GEDLACV------RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAG 50
Query: 1091 FYDPDSGHVLLD--NIELPKFKLS--WLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGAT 1145
P +G + LD +I+ P + +L + + +P L T+ N+ + G
Sbjct: 51 LLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAM---KPAL---TVAENLEFWAAFLGGE 104
Query: 1146 EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDE 1205
E +I AA EA ++ LP GY LS GQK+R+A+AR ++ N I +LDE
Sbjct: 105 ELDIAAALEAVGLAP-LAHLPFGY----------LSAGQKRRVALARLLVSNRPIWILDE 153
Query: 1206 ATSALDAESERVVQDALER 1224
T+ALDA + + + +
Sbjct: 154 PTAALDAAAVALFAELIRA 172
|
Length = 207 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 2e-16
Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 13/168 (7%)
Query: 386 ARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ 445
+R E +F G S + +G + G +G GK+T++ ++ PD+GEV +G + + +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 446 LKWIREKIGLVSQEPILFATSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGL 503
+ R + L + S EN+ + + I A+ F D LP
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-LPAA- 126
Query: 504 DTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI 551
QLS GQ++R+A+AR L + +LDE T+ALD +
Sbjct: 127 ---------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVAL 165
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 3e-16
Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 19/227 (8%)
Query: 1039 AIELRCVSFKY-PTRP-DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS 1096
+I+ V + Y P P + + N+ + G VALVG +GSGKST++ P S
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 1097 GHVLLD----NIELPKFKLSWLRQQMGLVSQ--EPVLFNETIRTNIAYG-KQGGATEEEI 1149
G + + E L LR+++ LV Q E LF T+ ++ +G K G +E+E
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDE- 120
Query: 1150 IAATEASNAHNFISALPHGYETNVGERG-VQLSGGQKQRIAIARAVLKNPKILLLDEATS 1208
A E A ++ + G ++ + +LSGGQ +R+AIA + P+IL LDE +
Sbjct: 121 --AKEK--ALKWLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAA 174
Query: 1209 ALDAES-ERVVQDALERVMVNRTTVVVAHRLTTI-KNADIIAVVKNG 1253
LD E + ++Q + T ++V H + + + AD + V+++G
Sbjct: 175 GLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 3e-16
Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 30/211 (14%)
Query: 1063 LSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG------HVLLD---NIELPKFKLSW 1113
L++P+ A+ G SG+GK+++I I P G VL D I LP K
Sbjct: 19 LTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK--- 75
Query: 1114 LRQQMGLVSQEPVLF-NETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETN 1172
+++G V Q+ LF + +R N+ YG +A + + ++ L G E
Sbjct: 76 --RRIGYVFQDARLFPHYKVRGNLRYG----------MAKSMVAQFDKIVALL--GIEPL 121
Query: 1173 VGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRT 1230
+ LSGG+KQR+AI RA+L P++LL+DE ++LD +R + LER+ +N
Sbjct: 122 LDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIP 181
Query: 1231 TVVVAHRLTTI-KNADIIAVVKNGVIAEQGS 1260
+ V+H L I + AD + V++ G + G
Sbjct: 182 ILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 3e-16
Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 15/190 (7%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF----KLS 1112
+ N+ SI G+ +A+VG SGSGKST++ L+ P SG V+ + + K K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 1113 WLRQQMGLVSQ-EPVLFNETIRTNIAYGKQ-GGATEEEIIAATEASNAHNFISALPHGYE 1170
Q++G + Q +L + T N+A G EI S A ++A+ G E
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEI-----NSRALEMLAAV--GLE 136
Query: 1171 TNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRT 1230
R +LSGG++QR+AIARA++ NP+++L DE T LDA + + L + +
Sbjct: 137 HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG 196
Query: 1231 T--VVVAHRL 1238
T +VV H L
Sbjct: 197 TAFLVVTHDL 206
|
Length = 233 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 4e-16
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 23/176 (13%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL---Q 445
E+ I G L V G T AL+G+SGSGKST+++++ D +GEV + G + ++
Sbjct: 22 ELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEA 81
Query: 446 LKWIREK-IGLVSQEPILFAT-SLRENIAY------GKENATDQEIRTAIELANAAKFID 497
+R K +G V Q +L T + EN+ + + +E K +D
Sbjct: 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD 141
Query: 498 KLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES-ERIV 552
LP QLSGG++QR+A+ARA P +L DE T LD ++ ++I
Sbjct: 142 HLP-----------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIA 186
|
Length = 228 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 4e-16
Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 28/233 (12%)
Query: 377 LRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLI 436
LR+V Y +V I +L + G VG SG GKST++ ++ D +G++ I
Sbjct: 6 LRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI 62
Query: 437 DGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIAYG------KENATDQEIRTAIEL 489
+ + +G+V Q L+ S+ EN+++G K+ +Q + E+
Sbjct: 63 GEKRMNDVPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEV 120
Query: 490 ANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE-- 547
A +D+ PK L SGGQ+QR+AI R ++ P + LLDE S LDA
Sbjct: 121 LQLAHLLDRKPKAL-----------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 169
Query: 548 -SERIVQDALVKIMTSRTTVVVAH-RLTTIRNADLIAVVHQGKIVEKGTHDEL 598
RI L K + RT + V H ++ + AD I V+ G++ + G EL
Sbjct: 170 VQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 5e-16
Identities = 64/234 (27%), Positives = 109/234 (46%), Gaps = 36/234 (15%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL--------- 1106
++ + + L +G ++++G SGSGKST + I P G ++++ +
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78
Query: 1107 ----PKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAYGKQGGATEEEIIAATEASNAHNF 1161
K +L LR ++ +V Q L++ T+ N+ E I S
Sbjct: 79 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM---------EAPIQVLGLSKQEAR 129
Query: 1162 ISALPHGYETNVGERG-----VQLSGGQKQRIAIARAVLKNPKILLLDEATSALD----A 1212
A+ + + + ER V LSGGQ+QR++IARA+ P++LL DE TSALD
Sbjct: 130 ERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVG 189
Query: 1213 ESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265
E R++Q E +T VVV H + ++ + + + G I E+G+ + L
Sbjct: 190 EVLRIMQQLAEE---GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
|
Length = 257 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 5e-16
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 39/229 (17%)
Query: 1055 VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWL 1114
+Q R + L + G+ VAL+G +G+GK+T++ I P SG ++ D ++
Sbjct: 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75
Query: 1115 -RQQMGLVSQEPVLFNE-TIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYE-- 1170
R + V + +F T+ N+ G +E E YE
Sbjct: 76 ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLE------------EVYELF 123
Query: 1171 ----TNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV- 1225
+R LSGG++Q +AIARA++ PK+LLLDE + L + ++V++ E +
Sbjct: 124 PRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIK 180
Query: 1226 MVNR---TTVVVAHRLTTIKNADI---IA----VVKNGVIAEQGSHDAL 1264
+ + T+++ +NA IA V++NG I G+ L
Sbjct: 181 ELRKEGGMTILLVE-----QNARFALEIADRGYVLENGRIVLSGTAAEL 224
|
Length = 237 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (194), Expect = 6e-16
Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 14/212 (6%)
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD--PD---SGHVLLDNIELPKFKLS- 1112
+++ + P A++G SG GKSTV+ I R +D P +G +LLD+ ++ +
Sbjct: 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80
Query: 1113 -WLRQQMGLVSQEPVLFNE-TIRTNI--AYGKQGGATEEEIIAATEASNAHNFISALPHG 1168
+R+++G+V Q+P F +I N+ Y G E E+S AL
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKR---VALWDE 137
Query: 1169 YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN 1228
+ + ++LSGGQ+QR+ IAR + P+++L+DE SALD S +++ +E +
Sbjct: 138 VKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK 197
Query: 1229 RTTVVVAHRL-TTIKNADIIAVVKNGVIAEQG 1259
T ++V H + + +D A G + E G
Sbjct: 198 YTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229
|
Length = 252 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 6e-16
Identities = 67/239 (28%), Positives = 124/239 (51%), Gaps = 29/239 (12%)
Query: 382 FRYPA----RPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLID 437
FRY R V+ S + G T A++G++GSGKST+ ++ +P +GE+LID
Sbjct: 14 FRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLID 73
Query: 438 GIDIKKLQLKWIREKIGLVSQEPILFATSL--RENIAYGKENATDQEIRTAIELANAAK- 494
+ + ++I ++ Q+P +TSL R+ I+ D +R +L +
Sbjct: 74 DHPLHFGDYSYRSQRIRMIFQDP---STSLNPRQRIS----QILDFPLRLNTDLEPEQRE 126
Query: 495 --FIDKLPK-GL-DTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER 550
I+ L + GL A + L+ GQKQR+ +ARA++ PK+++ DEA ++LD
Sbjct: 127 KQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMS--- 183
Query: 551 IVQDALVKIMTSR------TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDP 602
++ L+ +M + + V L +++ +D + V+HQG++VE+G+ +++ P
Sbjct: 184 -MRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASP 241
|
Length = 267 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 7e-16
Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 24/183 (13%)
Query: 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD-- 1095
G + L+ VS + P + N+ +I G+ V L+G SG GKST+++ +
Sbjct: 1 GMLCLKNVSLRLPGSC---LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFS 57
Query: 1096 -SGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAYG----KQGGATEEEI 1149
+G + L+ L L ++Q+G++ Q+ +LF ++ N+ + +G A
Sbjct: 58 CTGELWLNEQRLDM--LPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAA 115
Query: 1150 IAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSA 1209
AA E S P LSGGQ+ R+A+ RA+L PK LLLDE S
Sbjct: 116 NAALERSGLDGAFHQDPA-----------TLSGGQRARVALLRALLAQPKALLLDEPFSR 164
Query: 1210 LDA 1212
LD
Sbjct: 165 LDV 167
|
Length = 213 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 7e-16
Identities = 63/197 (31%), Positives = 92/197 (46%), Gaps = 44/197 (22%)
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118
+ + L+I G+ ++L+G SG GKST++ LI P SG V+L+ ++
Sbjct: 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI------------ 49
Query: 1119 GLVSQEP-----VLFNE-------TIRTNIAYG-----KQGGATEEEIIAATEASNAHNF 1161
EP V+F T+R NIA +E I H
Sbjct: 50 ----TEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIV-----EEHIA 100
Query: 1162 ISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDA 1221
+ L + +R QLSGG KQR+AIARA+ PK+LLLDE ALDA + +Q+
Sbjct: 101 LVGLTEAAD----KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156
Query: 1222 LERVMV-NRTTVV-VAH 1236
L ++ +R TV+ V H
Sbjct: 157 LMQIWEEHRVTVLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 7e-16
Identities = 55/199 (27%), Positives = 81/199 (40%), Gaps = 53/199 (26%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IEL +S P + ++L I G + + G SG+GKS++ + + SG
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG-- 56
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAH 1159
I +P + + + Q P L T+R + Y
Sbjct: 57 ---RIGMP------EGEDLLFLPQRPYLPLGTLREQLIY--------------------- 86
Query: 1160 NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQ 1219
P LSGG++QR+A AR +L PK + LDEATSALD ESE +
Sbjct: 87 ------PWDDV---------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLY 131
Query: 1220 DALERVMVNRTTVV-VAHR 1237
L+ + TV+ V HR
Sbjct: 132 QLLKELG---ITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 7e-16
Identities = 58/178 (32%), Positives = 87/178 (48%), Gaps = 24/178 (13%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLL----DNIEL----PK 1108
+ RN+ LS+ +G+ V L G SGSGKST++ + Y PD G +L+ + ++L P+
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 1109 FKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASN-AHNFISALPH 1167
L R +G VSQ F I A + A A + ++ L
Sbjct: 86 EVLEVRRTTIGYVSQ----FLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRL-- 139
Query: 1168 GYETNVGERGVQL-----SGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQD 1220
N+ ER L SGG++QR+ IAR + + ILLLDE T++LDA + VV +
Sbjct: 140 ----NLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE 193
|
Length = 235 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 7e-16
Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 37/237 (15%)
Query: 397 SLHVPSGTTAALVGQSGSGKS----TVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREK 452
S V G +VG+SGSGKS ++ L++ A ++ +G D++++ K R
Sbjct: 27 SYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNL 86
Query: 453 IG----LVSQEPILFATSLRENIAY--------------GKENATDQEIRTAIELANAAK 494
+G ++ Q+P+ TSL N Y G T ++ AI+L N
Sbjct: 87 VGAEVAMIFQDPM---TSL--NPCYTVGFQIMEAIKVHQGGNKKTRRQ--RAIDLLNQVG 139
Query: 495 FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD 554
D + LD + QLSGG QR+ IA AI PK+L+ DE T+ALD + + +
Sbjct: 140 IPDPASR-LDV----YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIE 194
Query: 555 ALVKIMTSRTT--VVVAHRLTTI-RNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
L+++ V++ H L + A I V++ G++VE G ++ + P PYTQ
Sbjct: 195 LLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQ 251
|
Length = 326 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 8e-16
Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 40/236 (16%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+E +V Y + S + G A+VG +G+GKST++ L+ P +G V
Sbjct: 322 LEFENVSKGYDGGRL--LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 435 LIDGIDIKKLQLKWIRE--KIGLVSQE--PILFATSLRENIAYGKENATDQEIRTAIELA 490
+ E KIG Q + ++ E ++ G + +QE+R A
Sbjct: 380 -------------KVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVR-----A 421
Query: 491 NAAKFIDKLPKGLDTMAGEHGTQ----LSGGQKQRIAIARAILKNPKILLLDEATSALDA 546
+F G GE + LSGG+K R+ +A+ +L+ P +LLLDE T+ LD
Sbjct: 422 YLGRF------GFT---GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDI 472
Query: 547 ESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601
ES +++AL + T ++V+H + A I +V +G +++ ++
Sbjct: 473 ESLEALEEAL--LDFEGTVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYLEQ 526
|
Length = 530 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 1e-15
Identities = 62/188 (32%), Positives = 100/188 (53%), Gaps = 22/188 (11%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL----QLKWIREK 452
S + G A+VG SGSGKST++ L+ P +G+V+ +G + KL + + +K
Sbjct: 29 SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQK 88
Query: 453 IGLVSQEPILFA--TSLRENIAY----GKENATDQEIRTAIELANAAKFIDKLPKGLDTM 506
+G + Q L T+L EN+A GK+ + A+E+ A GL+
Sbjct: 89 LGFIYQFHHLLPDFTAL-ENVAMPLLIGKKK-PAEINSRALEMLAAV--------GLEHR 138
Query: 507 AGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTT- 565
A ++LSGG++QR+AIARA++ NP+++L DE T LDA + + L ++ + T
Sbjct: 139 ANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTA 198
Query: 566 -VVVAHRL 572
+VV H L
Sbjct: 199 FLVVTHDL 206
|
Length = 233 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 1e-15
Identities = 68/238 (28%), Positives = 117/238 (49%), Gaps = 29/238 (12%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
AI+L VS Y D + +L +I G+ L+G +G+GKST+ ++ PD G
Sbjct: 4 AIDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGK 60
Query: 1099 V-LLDNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNI-AYGKQGGATEEEIIAATEA 1155
+ +L + +L+ R +G+V Q L E T+R N+ +G+ G + EI A
Sbjct: 61 ITVLGEPVPSRARLA--RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP- 117
Query: 1156 SNAHNFISALPHG-YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAES 1214
S L E+ R LSGG K+R+ +ARA++ +P++L+LDE T+ LD +
Sbjct: 118 -------SLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 170
Query: 1215 ERVVQDALERVMVNRTTVVV-------AHRLTTIKNADIIAVVKNGVIAEQGSHDALM 1265
++ + L ++ T+++ A RL D + V+++G +G AL+
Sbjct: 171 RHLIWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVLESGRKIAEGRPHALI 223
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-15
Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 386 ARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ 445
R +F+G S + +G + G +GSGK+T++ ++ P AG VL++G + +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 446 LKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDT 505
R + L I S+ EN+ + + +D+++ A+ F D P
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-RPVA--- 124
Query: 506 MAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESE 549
QLS GQ++R+A+AR +L + +LDE T+ALD
Sbjct: 125 -------QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGV 161
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 1e-15
Identities = 56/236 (23%), Positives = 104/236 (44%), Gaps = 36/236 (15%)
Query: 387 RPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD----AGEVLIDGIDIK 442
RP + S G A++G SG+GK+T+++ + F P +G VL++G
Sbjct: 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNG---M 90
Query: 443 KLQLKWIREKIGLVSQEPILFAT-SLRENIAY------GKENATDQ------EIRTAIEL 489
+ K +R V Q+ + T ++RE++ + + + E+ A+ L
Sbjct: 91 PIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGL 150
Query: 490 ANAAKFIDKLPKGLDTMAGEHGTQ--LSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
A +T G G LSGG+++R+A A +L +P +L DE TS LD+
Sbjct: 151 RKCA----------NTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSF 200
Query: 548 SERIVQDALVKIMTSRTTVVVA-HRLTT--IRNADLIAVVHQGKIVEKGTHDELIK 600
V L + T++ H+ ++ D I ++ +G++ G+ D+ +
Sbjct: 201 MAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-15
Identities = 65/243 (26%), Positives = 126/243 (51%), Gaps = 20/243 (8%)
Query: 375 IELRDVYFRYPA--RPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
I++R+V RY + R V+ SL V G +VG SG+GK+T+ ++ +P +G
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 433 EVLI----DGIDIKKLQLKW---IREKIGLVSQEPILFA-TSLRENI--AYGKENATDQE 482
EV + + +D+ K + IG++ QE L+ ++ +N+ A G E +
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA 399
Query: 483 IRTAIELANAAKFIDKLPKG-LDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEAT 541
A+ F ++ + LD E LS G++ R+A+A+ ++K P+I++LDE T
Sbjct: 400 RMKAVITLKMVGFDEEKAEEILDKYPDE----LSEGERHRVALAQVLIKEPRIVILDEPT 455
Query: 542 SALDAESERIVQDALVK--IMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598
+D ++ V +++K +T ++V+H + + + D A++ GKIV+ G +E+
Sbjct: 456 GTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515
Query: 599 IKD 601
+++
Sbjct: 516 VEE 518
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 2e-15
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 18/233 (7%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD--- 1095
AIE + Y + + + L IP AL+G SG GKST++ R + +
Sbjct: 4 AIETVNLRVYYG---SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEA 60
Query: 1096 --SGHVLL--DNIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYG-KQGG--ATEE 1147
G V L NI P +R+++G+V Q P F + TI N+A G K G +++
Sbjct: 61 RVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKK 120
Query: 1148 EIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEAT 1207
E+ E + +AL + + + LSGGQ+QR+ IARA+ PKILL+DE T
Sbjct: 121 ELDERVEWALKK---AALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPT 177
Query: 1208 SALDAESERVVQDALERVMVNRTTVVVAHR-LTTIKNADIIAVVKNGVIAEQG 1259
+ +D +++ L + T V+V H + +D +A + G + E G
Sbjct: 178 ANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 61/204 (29%), Positives = 91/204 (44%), Gaps = 44/204 (21%)
Query: 1031 MTLSSVGGAIELRCVSFKYPT------RPDVQIFRNLCLSIPSGKTVALVGESGSGKSTV 1084
MTL +V G +S Y + N+ LS+ SG+TVAL+G SG GKST+
Sbjct: 1 MTLLNVSG------LSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTL 54
Query: 1085 IALIERFYDPDSGHVLLDNIELPKFKLSW---LRQQMGLVSQEPV-LFN--ETIRTNIA- 1137
L+ P G+V L K + R+ + +V Q+ + N +T+R I
Sbjct: 55 ARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIRE 114
Query: 1138 ----------YGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQR 1187
+ A E++ A + ++ + P QLSGGQ QR
Sbjct: 115 PLRHLLSLDKAERL--ARASEMLRAVDLDDSV--LDKRPP-----------QLSGGQLQR 159
Query: 1188 IAIARAVLKNPKILLLDEATSALD 1211
+ +ARA+ PK+L+LDEA S LD
Sbjct: 160 VCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 22/223 (9%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLR 1115
++ + L + G+ +A++G +G+GKST++ + PDSG V L+ + L + L
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74
Query: 1116 QQMGLVSQEPVL-FNETIRTNIAYGK---QGGATEEEIIAATEASNAHNFISALPHGYET 1171
+ ++ Q L F T++ + G+ + G EE + A +S L
Sbjct: 75 RHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGL------ 128
Query: 1172 NVGERGVQ-LSGGQKQRIAIAR------AVLKNPKILLLDEATSALD-AESERVVQDALE 1223
R + LSGG++QR+ +AR + + + L LDE TSALD A ++ A +
Sbjct: 129 --AGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ 186
Query: 1224 RVMVNRTTVVVAHRLT-TIKNADIIAVVKNG-VIAEQGSHDAL 1264
+ V H L + AD I ++ G VIA D L
Sbjct: 187 LAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 2e-15
Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 29/188 (15%)
Query: 1068 GKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK---LSWLRQQMGLVSQE 1124
G+ L G SG+GKST++ LI P +G + ++ + K + +LR+Q+G++ Q+
Sbjct: 28 GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD 87
Query: 1125 P-VLFNETIRTNIAYGKQ-GGATEEEIIAATEAS--------NAHNFISALPHGYETNVG 1174
+L + T+ N+A GA+ ++I A+ A NF
Sbjct: 88 HHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF------------- 134
Query: 1175 ERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD-AESERVVQDALERVMVNRTTVV 1233
+QLSGG++QR+ IARAV+ P +LL DE T LD A SE +++ E V T ++
Sbjct: 135 --PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLM 192
Query: 1234 VAHRLTTI 1241
H + I
Sbjct: 193 ATHDIGLI 200
|
Length = 222 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-15
Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 22/215 (10%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI---ELPKFK 1110
DV I +++ L I G+ V VG SG GKST++ +I D SG + + ++P +
Sbjct: 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE 74
Query: 1111 LSWLRQQMGLVSQEPVLF-NETIRTNIAYG-KQGGATEEEIIAATEASNAHNFISALPHG 1168
+G+V Q L+ + ++ N+++G K GA +EEI + L H
Sbjct: 75 RG-----VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAE---VLQLAHL 126
Query: 1169 YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV---VQDALERV 1225
+ + LSGGQ+QR+AI R ++ P + LLDE S LDA + RV ++ +
Sbjct: 127 LD----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHK 181
Query: 1226 MVNRTTVVVAH-RLTTIKNADIIAVVKNGVIAEQG 1259
+ RT + V H ++ + AD I V+ G +A+ G
Sbjct: 182 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
Length = 369 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 37/224 (16%)
Query: 1047 FKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL 1106
+ + +++ +P G+ + L+G +G+GKST++ L+ Y PDSG V +
Sbjct: 27 GRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG--- 83
Query: 1107 PKFKLSWLRQQMGL-VSQEPVLFNETIRTNIAY--------GKQGGATEEEIIAATEASN 1157
++S L +GL P L T R NI K+ +EII +E
Sbjct: 84 ---RVSSL---LGLGGGFNPEL---TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSE--- 131
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
L + V S G K R+A A A P ILL+DE + DA +
Sbjct: 132 -------LGDFIDLPVKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEK 180
Query: 1218 VQDAL-ERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259
Q L E + +T ++V+H ++IK D V++ G I G
Sbjct: 181 CQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 2e-15
Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 26/232 (11%)
Query: 379 DVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDG 438
D++FRY + + G +L LVG +G GKST+ + P G VL G
Sbjct: 6 DLWFRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62
Query: 439 --IDIKKLQLKWIREKIGLVSQEP--ILFATSLRENIAYGKENATDQEIRTAIELANAAK 494
+D K L +R+++ V Q+P +F T + +IA+ N E + A
Sbjct: 63 KPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALT 122
Query: 495 FIDKLPKGLDTMAGEHGTQ-----LSGGQKQRIAIARAILKNPKILLLDEATSALDAESE 549
+D +H LS GQK+R+AIA A++ + LLLDE T+ LD
Sbjct: 123 LVD----------AQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG- 171
Query: 550 RIVQDALVK--IMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598
R A+++ + ++ +H + I +D + V+ QG+I+ G E+
Sbjct: 172 RTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223
|
Length = 271 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 3e-15
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 23/217 (10%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLR 1115
+ N+ LSI G+TV L+G SG GKST+ L+ P G V +L + R
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD----R 80
Query: 1116 QQMGLVSQE-PVLFNETIRTNIAYGKQGGATEEEIIA-------ATEASNAHNFISALPH 1167
+Q ++ ++F ++ A + T +II + + S I+ L
Sbjct: 81 KQRRAFRRDVQLVFQDSPS---AVNPR--MTVRQIIGEPLRHLTSLDESEQKARIAELLD 135
Query: 1168 --GYETNVGER-GVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224
G + ++ QLSGGQ QRI IARA+ PK+++LDEA S LD + V+ + L +
Sbjct: 136 MVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK 195
Query: 1225 VMVNRTT--VVVAHRLTTIKN-ADIIAVVKNGVIAEQ 1258
+ T + + H L +++ +AV+ G I E+
Sbjct: 196 LQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 3e-15
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 21/171 (12%)
Query: 1048 KYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIE-- 1105
+Y R ++ + LS+ G+ V L+G +G+GK+T +I PDSG +LLD +
Sbjct: 9 RYGKR---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT 65
Query: 1106 -LPKFKLSWLRQQMGL--VSQEPVLFNE-TIRTNI-AYGKQGGATEEEIIAATEASNAHN 1160
LP K R ++G+ + QE +F + T+ NI A + G +++E E
Sbjct: 66 KLPMHK----RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEE----- 116
Query: 1161 FISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
+ + LSGG+++R+ IARA+ NPK LLLDE + +D
Sbjct: 117 LLEEF--HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVD 165
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 3e-15
Identities = 57/215 (26%), Positives = 109/215 (50%), Gaps = 15/215 (6%)
Query: 396 FSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGL 455
S + G L+G +G+GKST+ ++ PD G++ + G + + + R IG+
Sbjct: 23 LSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RARLARVAIGV 81
Query: 456 VSQ-EPILFATSLRENI-AYGKE-NATDQEIRTAI-ELANAAKFIDKLPKGLDTMAGEHG 511
V Q + + ++REN+ +G+ + +EI I L A+ L++ A
Sbjct: 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR--------LESKADVRV 133
Query: 512 TQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAH 570
LSGG K+R+ +ARA++ +P++L+LDE T+ LD + ++ + L ++ +T ++ H
Sbjct: 134 ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193
Query: 571 RLTTI-RNADLIAVVHQGKIVEKGTHDELIKDPEG 604
+ R D + V+ G+ + +G LI + G
Sbjct: 194 FMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIG 228
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 3e-15
Identities = 68/241 (28%), Positives = 119/241 (49%), Gaps = 38/241 (15%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
I+ R+V RY + V G S HV G L+G +G+GK+T + ++ PDAG +
Sbjct: 8 IDFRNVEKRYGDKLVVD---GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQ----EPILFATSLRENIA-----YGKENATDQE-IR 484
+ G + + + R+++G+V Q +P ++REN+ +G A + +
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAARALVP 120
Query: 485 TAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
+E A KL D GE LSGG K+R+ +ARA++ +P +L+LDE T+ L
Sbjct: 121 PLLEFA-------KLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGL 169
Query: 545 DAESERIVQDALVKIMTSRTTVVVAHRLTT------IRNADLIAVVHQGKIVEKGTHDEL 598
D ++ ++ + L ++ T++ LTT R D + V+ +G+ + +G L
Sbjct: 170 DPQARHLMWERLRSLLARGKTIL----LTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225
Query: 599 I 599
I
Sbjct: 226 I 226
|
Length = 306 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 4e-15
Identities = 60/224 (26%), Positives = 113/224 (50%), Gaps = 20/224 (8%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
A+E+R ++ ++P V ++ LS+ G+ AL+GE+G+GKST++ ++ Y PDSG
Sbjct: 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 1099 VLLDNIELPKFKLSW--LRQQMGLVSQEPVLF-NETIRTNIAYGKQGGATEEEIIAATEA 1155
+ +D E+ K +R +G+V Q +L T+ NI G +
Sbjct: 61 IRVDGKEVR-IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQ--- 116
Query: 1156 SNAHNFISAL--PHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL-DA 1212
A I L +G + + LS G++QR+ I +A+ + ++L+LDE T+ L
Sbjct: 117 --ARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQ 174
Query: 1213 ESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNG 1253
E++ + + + R + +T + + H+L + AD + V++ G
Sbjct: 175 EADELFE--ILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRG 216
|
Length = 501 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (189), Expect = 4e-15
Identities = 61/216 (28%), Positives = 111/216 (51%), Gaps = 15/216 (6%)
Query: 1063 LSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL----PKFKLSWLRQQM 1118
L + G AL+G +GSGKST++ + P G V + +I + + ++ +R+++
Sbjct: 27 LEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKV 86
Query: 1119 GLVSQEP--VLFNETIRTNIAYGKQG-GATEEEIIAATEASNAHNFISALPHGYETNVGE 1175
G+V Q P LF ET+ ++A+G Q G +E+ A A+ + +E + E
Sbjct: 87 GVVFQFPESQLFEETVLKDVAFGPQNFGIPKEK--AEKIAAEKLEMVGLADEFWEKSPFE 144
Query: 1176 RGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV-MVNRTTVVV 1234
LSGGQ +R+AIA + P++L+LDE T+ LD ++ + E + +T V+V
Sbjct: 145 ----LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLV 200
Query: 1235 AHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITD 1269
H + + + AD + +++ G I G+ + + D
Sbjct: 201 THLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVD 236
|
Length = 288 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 4e-15
Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 34/224 (15%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL-KWIREKIGL 455
SL V SG L+G +G+GK+T +V DAG ++ID DI L L R IG
Sbjct: 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82
Query: 456 VSQEPILFAT-SLRENI----AYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEH 510
+ QE +F S+ +N+ + + +Q A EL I+ L +
Sbjct: 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFH-IEHLRDSM------- 134
Query: 511 GTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES----ERIVQD-------ALVKI 559
G LSGG+++R+ IARA+ NPK +LLDE + +D S +RI++ L+
Sbjct: 135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITD 194
Query: 560 MTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPE 603
R T+ V R +V QG ++ GT E+++D
Sbjct: 195 HNVRETLAVCERAY---------IVSQGHLIAHGTPTEILQDEH 229
|
Length = 241 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 5e-15
Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 36/178 (20%)
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTV-IALIERFYDPDSGHVLLDNIELPKF---KLSWL 1114
+N+ ++ G+T+ LVGESGSGKST +AL+ G + D L +L +
Sbjct: 303 KNISFTLRPGETLGLVGESGSGKSTTGLALLRLI--NSQGEIWFDGQPLHNLNRRQLLPV 360
Query: 1115 RQQMGLVSQEPVLFNETI--RTN----IAYGKQ-------GGATEEEIIAATEASNAHNF 1161
R ++ +V Q+P N ++ R N I G + E+++IA E
Sbjct: 361 RHRIQVVFQDP---NSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVG---L 414
Query: 1162 ISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQ 1219
H Y + SGGQ+QRIAIARA++ P +++LDE TS+LD + VQ
Sbjct: 415 DPETRHRYPA-------EFSGGQRQRIAIARALILKPSLIILDEPTSSLD----KTVQ 461
|
Length = 529 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 5e-15
Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 17/169 (10%)
Query: 1052 RPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD---SGHVLLDNIELP- 1107
+I ++ L + SG+ +A++G SGSGK+T++ I + SG +L +
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP 76
Query: 1108 ---KFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISA 1164
+ ++++RQ L+ T+R + Y + A + +
Sbjct: 77 DQFQKCVAYVRQDDILLP------GLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRD 130
Query: 1165 LPHGYETNVGERGVQ-LSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
L T +G V+ +SGG+++R++IA +L +PK+L+LDE TS LD+
Sbjct: 131 LAL---TRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDS 176
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 6e-15
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 37/183 (20%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK------ 1110
+F +L ++ +G+ + + G +G+GK+T++ ++ PD+G V + +
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA 76
Query: 1111 LSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYE 1170
L +L Q G+ ++ L N +G AT E +A
Sbjct: 77 LLYLGHQPGIKTELTALENLHFWQRF-HGSGNAATIWEALAQ------------------ 117
Query: 1171 TNVGERGV------QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224
VG G+ QLS GQ++R+A+AR L + +LDE +ALD E L
Sbjct: 118 --VGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV----ALLTA 171
Query: 1225 VMV 1227
+M
Sbjct: 172 LMA 174
|
Length = 209 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 8e-15
Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 5/208 (2%)
Query: 396 FSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGL 455
++ +P G A++G +G GKST++ + R P G V +DG I+ K + +IGL
Sbjct: 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85
Query: 456 VSQEPILFA-TSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQL 514
++Q +++E +A G+ R E A + G+ +A + L
Sbjct: 86 LAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQ-ATGITHLADQSVDTL 144
Query: 515 SGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR--TTVVVAHRL 572
SGGQ+QR IA + + I+LLDE T+ LD + + + L ++ + T V H L
Sbjct: 145 SGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL 204
Query: 573 T-TIRNADLIAVVHQGKIVEKGTHDELI 599
R A + + +GKIV +G E++
Sbjct: 205 NQACRYASHLIALREGKIVAQGAPKEIV 232
|
Length = 265 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 9e-15
Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 17/170 (10%)
Query: 1048 KYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELP 1107
Y R ++ ++ L + SG+ V L+G +G+GK+T +I PDSG +LLD+ ++
Sbjct: 13 SYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDIT 69
Query: 1108 KFKLSWLRQQMGL--VSQEPVLFNE-TIRTNI-AYGKQGGATEEEIIAATEASN-AHNF- 1161
K + R ++G+ + QE +F + T+ NI A + ++ E F
Sbjct: 70 KLPM-HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFH 128
Query: 1162 ISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
I+ L + LSGG+++R+ IARA+ NPK +LLDE + +D
Sbjct: 129 ITHLRD-------SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171
|
Length = 243 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 9e-15
Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 14/160 (8%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116
+F L ++ +G+ + + G +G GK+T++ ++ PDSG V + L + + +
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEP-HR 73
Query: 1117 QMGLVSQEPVLFNE-TIRTNIA-YGKQGGATEEEIIAATEASNAHNFISALPHGYETNVG 1174
+ + P L E + N+ + G + I A A F
Sbjct: 74 NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAA------- 126
Query: 1175 ERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAES 1214
QLS GQ++R+A+AR L + +LDE T+ALD
Sbjct: 127 ----QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAG 162
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 9e-15
Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 68/185 (36%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGI------DIKKLQLKWIR 450
S + G + G SG+GKS++ R + G+ I +
Sbjct: 21 SFEIKPGDRLLITGPSGTGKSSLF----R---------ALAGLWPWGSGRIGMPE----G 63
Query: 451 EKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEH 510
E + + Q P L +LRE + Y D
Sbjct: 64 EDLLFLPQRPYLPLGTLREQLIY----PWDDV---------------------------- 91
Query: 511 GTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESE----RIVQDALVKIMTSRTTV 566
LSGG++QR+A AR +L PK + LDEATSALD ESE +++++ + +++
Sbjct: 92 ---LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVIS----- 143
Query: 567 VVAHR 571
V HR
Sbjct: 144 -VGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 9e-15
Identities = 64/224 (28%), Positives = 95/224 (42%), Gaps = 38/224 (16%)
Query: 382 FRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDI 441
R E S VP G L+G++G+GKST++ L+ Y PD+G V + G
Sbjct: 27 GRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG--- 83
Query: 442 KKLQLKWIREKIGL-VSQEPILFATSLRENI-----AYGKENATDQEIRTA----IELAN 491
++ + +GL P L + RENI G + +EI IE +
Sbjct: 84 ---RVSSL---LGLGGGFNPEL---TGRENIYLNGRLLGL---SRKEIDEKIDEIIEFSE 131
Query: 492 AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI 551
FID K S G K R+A A A P ILL+DE + DA +
Sbjct: 132 LGDFIDLPVK-----------TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEK 180
Query: 552 VQDALV-KIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKG 593
Q L + +T ++V+H ++I+ D V+ +GKI G
Sbjct: 181 CQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 9e-15
Identities = 64/202 (31%), Positives = 93/202 (46%), Gaps = 39/202 (19%)
Query: 1063 LSIPSGKTVALVGESGSGKSTVI----ALIERFYDPDSGHVLLDN-----------IELP 1107
L+I G+ VAL+G SGSGKST++ LI S LL I
Sbjct: 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKS 84
Query: 1108 KFKLSWLRQQMGLVSQEPVLFNETI---------RTNIAYGKQGGATEEEIIAATEASNA 1158
+ ++ QQ LV++ VL N I RT ++ + + + A T
Sbjct: 85 RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTRE-QKQRALQALTRVGMV 143
Query: 1159 HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV 1218
H H +R LSGGQ+QR+AIARA+++ K++L DE ++LD ES R+V
Sbjct: 144 H-----FAH-------QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV 191
Query: 1219 QDALERVMVNR--TTVVVAHRL 1238
D L + N T VV H++
Sbjct: 192 MDTLRDINQNDGITVVVTLHQV 213
|
Length = 262 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 1e-14
Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 19/219 (8%)
Query: 1051 TRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK 1110
D + + LS+ G V LVG +G+GK+T++ I P +G VL+ ++
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 1111 LSWLRQQMGLVSQEPVL-FNETIRTNIAYGKQ------GGATEEEIIAATEASNAHNFIS 1163
+++ V Q+ L F +R + G+ TE + A A
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMER----- 126
Query: 1164 ALPHGYETNVGERGV-QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE-RVVQDA 1221
+R V LSGG++QR+ +ARA+ + +LLLDE T++LD + R ++
Sbjct: 127 ----TGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELV 182
Query: 1222 LERVMVNRTTVVVAHRLT-TIKNADIIAVVKNGVIAEQG 1259
V +T V H L + D + ++ +G + G
Sbjct: 183 RRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
Length = 402 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 60/218 (27%), Positives = 97/218 (44%), Gaps = 21/218 (9%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWL- 1114
I R + L +P G+ ++G +G GK+T++ + SG + LD ++ K
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA 73
Query: 1115 RQQMGLVSQEPVLFNE-TIRTNIAYGKQG-GATEEEIIAATEASNAHNFISALPHGYETN 1172
R + V Q +F T+ N+ G +I I L +
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPD---------EIYELFPVLKEM 124
Query: 1173 VGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD----AESERVVQD-ALERVMV 1227
+G RG LSGGQ+Q++AIARA++ PK+LLLDE T + + RV++ E M
Sbjct: 125 LGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM- 183
Query: 1228 NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264
++V L + AD V++ G + G+ D L
Sbjct: 184 --AILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-14
Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 30/244 (12%)
Query: 1058 FRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDN---IELPKFKLS-- 1112
R++ + G+ + +VGESGSGKST++ + PD G EL ++LS
Sbjct: 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78
Query: 1113 ----WLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHG 1168
+R + G V Q P R + GA E + A A + N I A
Sbjct: 79 ERRRLMRTEWGFVHQNP-------RDGLRMRVSAGANIGERLMAIGARHYGN-IRATAQD 130
Query: 1169 Y-------ETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDA 1221
+ T + + SGG +QR+ IAR ++ P+++ +DE T LD + + D
Sbjct: 131 WLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDL 190
Query: 1222 LERVMVNR--TTVVVAHRLTTIK-NADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278
L ++ + ++V H L + A + V++ G + E G D ++ D L
Sbjct: 191 LRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTD---QVLDDPQHPYTQL 247
Query: 1279 HVSS 1282
VSS
Sbjct: 248 LVSS 251
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-14
Identities = 64/238 (26%), Positives = 108/238 (45%), Gaps = 30/238 (12%)
Query: 1040 IELRCVSFKYPT-RPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
+EL+ + YP+ V++ + + L I +G+ VA+VG SGSGKST++ ++ P SG
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 1099 --------VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNI----AYGKQGGAT 1145
LD L + + R+ G + Q L + T N+ Y
Sbjct: 65 YRVAGQDVATLDADALAQLR----REHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ 120
Query: 1146 EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDE 1205
A + L G E V + QLSGGQ+QR++IARA++ +++L DE
Sbjct: 121 RLL--------RAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADE 170
Query: 1206 ATSALDAESERVVQDALERVMVN-RTTVVVAHRLTTIKNADIIAVVKNG-VIAEQGSH 1261
T ALD+ S V L ++ T ++V H A+ + +++G ++ +
Sbjct: 171 PTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQ 228
|
Length = 648 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 63/242 (26%), Positives = 100/242 (41%), Gaps = 33/242 (13%)
Query: 1049 YPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPK 1108
+ +++ I G+ V ++G +G+GKST++ LI Y P SG V +
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG----- 88
Query: 1109 FKLSWLRQ-QMGLVSQEPVLFNETIRTNIAY----GKQGGATEEEIIAATEASNAHNFIS 1163
K++ L + G + E I K+ +EII E +FI
Sbjct: 89 -KVAPLIELGAGFDPELTGR--ENIYLRGLILGLTRKEIDEKVDEIIEFAE---LGDFID 142
Query: 1164 ALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDAL- 1222
Y S G R+A + A P ILLLDE + DA + + L
Sbjct: 143 QPVKTY-----------SSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLN 191
Query: 1223 ERVMVNRTTVVVAHRLTTIKNA-DIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVS 1281
E V N+T V+V+H L IK D +++G I +GS + ++ AY +A +S
Sbjct: 192 ELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP----AYEEDLADRLS 247
Query: 1282 SS 1283
+
Sbjct: 248 LN 249
|
Length = 249 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 2e-14
Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 46/215 (21%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKST---VIALIERFYDPDSGHVLLDNIELPKFK 1110
+I + + L+I G+ AL+G +GSGKST I + Y+ G +L ++
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK-YEVTEGEILFKGEDITDLP 70
Query: 1111 LSWLRQQMG--LVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHG 1168
R ++G L Q P EI NA +F+ +
Sbjct: 71 PE-ERARLGIFLAFQYPP---------------------EI---PGVKNA-DFLRYV--- 101
Query: 1169 YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-V 1227
N G SGG+K+R I + +L P + +LDE S LD ++ R+V + + ++
Sbjct: 102 ---NEG-----FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE 153
Query: 1228 NRTTVVVAH--RLTTIKNADIIAVVKNGVIAEQGS 1260
++ +++ H RL D + V+ +G I + G
Sbjct: 154 GKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGD 188
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 40/216 (18%)
Query: 387 RPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL 446
R E +F+ S + +G + G +G+GK+T++ ++ PDAGEV G I+
Sbjct: 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQN-VR 70
Query: 447 KWIREKIGLVSQEP-ILFATSLRENIAYGKE---NATDQEIRTAIELANAAKFIDKLPKG 502
+ + + + +P I + EN+ + + + I A+ A D LP G
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED-LPVG 129
Query: 503 LDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS 562
QLS GQ++R+A+AR L + +LDE +ALD E ++
Sbjct: 130 ----------QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL---------- 169
Query: 563 RTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDEL 598
T ++ AH QG IV TH L
Sbjct: 170 -TALMAAH-------------AAQGGIVLLTTHQPL 191
|
Length = 209 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 61/229 (26%), Positives = 111/229 (48%), Gaps = 39/229 (17%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL-KWI 449
++ AG LH LVG +G+GKST+++ + P +G + G ++ +
Sbjct: 18 EVRAGEILH--------LVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELA 68
Query: 450 REKIGLVSQEPILFATSLRENIA-YGKENATDQEIRTAI-ELANAAKFIDKLPKGLDTMA 507
R + L Q+ FA + + + + + + + +A+ E+A A DKL + +
Sbjct: 69 RHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSV---- 124
Query: 508 GEHGTQLSGGQKQRIAIARAILK-----NP--KILLLDEATSALDAESERIVQ----DAL 556
QLSGG+ QR+ +A +L+ NP ++LLLDE ++LD + Q D L
Sbjct: 125 ----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-----VAQQAALDRL 175
Query: 557 VKIMTS--RTTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELIKDP 602
+ + V+ +H L T+R+AD + ++ QGK++ G DE++
Sbjct: 176 LSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPE 224
|
Length = 248 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 3e-14
Identities = 71/245 (28%), Positives = 116/245 (47%), Gaps = 30/245 (12%)
Query: 398 LHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG-----EVLIDGI--------DIKK- 443
L++ G AL+G SGSGKST++ + D E+L + DI+K
Sbjct: 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKS 84
Query: 444 -LQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPK- 501
+I ++ LV++ +L EN+ G +T RT + L
Sbjct: 85 RANTGYIFQQFNLVNRLSVL------ENVLIGALGSTPF-WRTCFSWFTREQKQRALQAL 137
Query: 502 ---GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVK 558
G+ A + + LSGGQ+QR+AIARA+++ K++L DE ++LD ES RIV D L
Sbjct: 138 TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD 197
Query: 559 IMTSR--TTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELIKDP-EGPYTQLVRLQE 614
I + T VV H++ +R + I + QG + G+ + + + Y + R++E
Sbjct: 198 INQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNERFDHLYRSINRVEE 257
Query: 615 GSKEA 619
+K A
Sbjct: 258 NAKAA 262
|
Length = 262 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 3e-14
Identities = 49/206 (23%), Positives = 99/206 (48%), Gaps = 18/206 (8%)
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454
S VP G L+G +G+GK+T ++ +P GE+ +G + + I+ +IG
Sbjct: 20 NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKNRIG 75
Query: 455 LVSQEPILFA-TSLRENIAYGKE--NATDQEIRTAIE-LANAAKFIDKLPKGLDTMAGEH 510
+ +E L+ ++ + + Y E EI+ ++ + + K K +
Sbjct: 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKE----- 130
Query: 511 GTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVA- 569
LS G +Q+I A++ P++L+LDE S LD + +++DA+ ++ T++ +
Sbjct: 131 ---LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSS 187
Query: 570 HRLTTI-RNADLIAVVHQGKIVEKGT 594
HR+ + D + ++ +G+ V GT
Sbjct: 188 HRMEHVEELCDRLLMLKKGQTVLYGT 213
|
Length = 300 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 3e-14
Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 20/212 (9%)
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454
S G +G +G+GKST + ++ + PD+G V + G D+ + + ++ IG
Sbjct: 20 EVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQRNIG 78
Query: 455 -LVSQEPILFATSLRENIA-----YG-KENATDQEIRTAIELANAAKFIDKLPKGLDTMA 507
L P+ +RE + YG K Q + IEL GL
Sbjct: 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELV-----------GLRPEQ 127
Query: 508 GEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVV 567
+ QLS G +QR+ +A+A++ +PK+L+LDE T+ LD +++ + I +T ++
Sbjct: 128 HKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIIL 187
Query: 568 VAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598
H + + D + ++++GKIV DEL
Sbjct: 188 STHIMQEVEAICDRVIIINKGKIVADKKLDEL 219
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 4e-14
Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 29/230 (12%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+E VS Y + ++L I G +A+VG +G+GKST++ L+ P SG V
Sbjct: 322 LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 1100 LLDNIELPKFKLSWLRQ-QMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNA 1158
+ K+ + Q + L + VL E + E+E+ A
Sbjct: 380 KVG----ETVKIGYFDQHRDELDPDKTVL--EELSEG-----FPDGDEQEVRAY-----L 423
Query: 1159 HNFISALPHGYETNVGERGVQ-LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
F G+ E+ V LSGG+K R+ +A+ +L+ P +LLLDE T+ LD ES
Sbjct: 424 GRF------GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA 477
Query: 1218 VQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266
+++AL T ++V+H + A I +V++ V +G ++ ++
Sbjct: 478 LEEALLD--FEGTVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYLE 525
|
Length = 530 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (181), Expect = 4e-14
Identities = 56/219 (25%), Positives = 107/219 (48%), Gaps = 14/219 (6%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH-----VLLDNIELPKFK- 1110
+ + + P+ +L+G +GSGK+T + + R D SG+ VLL + ++
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 1111 LSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATE---ASNAHNFISALPH 1167
+ R+++G++ Q P F +I N+ G +++ E + A L
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVL----AGVRAHKLVPRKEFRGVAQARLTEVGLWD 151
Query: 1168 GYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV 1227
+ + + +LSGGQ+Q + +AR + NP++LLLDE TSALD + +++ + +
Sbjct: 152 AVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD 211
Query: 1228 NRTTVVVAHRLT-TIKNADIIAVVKNGVIAEQGSHDALM 1265
T ++V H L + +D A+ +G + E+G + L
Sbjct: 212 RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 4e-14
Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 21/231 (9%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+ R +S +Y V++ + + ++ +G+ AL+G +G+GKST++ +I PDSG +
Sbjct: 12 LCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 1100 LLDNIELPKFKLSWLR-QQMG--LVSQEPVLF-NETIRTNIAYGKQGGATEEEIIAATEA 1155
+ P +L+ + Q+G LV QEP+LF N +++ NI +G + +
Sbjct: 69 EIGGN--PCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQ--- 123
Query: 1156 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD-AES 1214
++AL G + ++ L +Q + I R ++++ +IL+LDE T++L AE+
Sbjct: 124 -----LLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAET 176
Query: 1215 ERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264
ER+ E + V ++H+L I+ AD I+V+++G IA G L
Sbjct: 177 ERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 4e-14
Identities = 54/220 (24%), Positives = 102/220 (46%), Gaps = 23/220 (10%)
Query: 394 AGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL-KWIREK 452
S V +G LVG +G+GKST+++ + +G + G ++ + R +
Sbjct: 16 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHR 74
Query: 453 IGLVSQEPILFATSLRENIAYGKENATDQEIRTAI-ELANAAKFIDKLPKGLDTMAGEHG 511
L Q+ FA + + + D+ + ++A A DKL + +
Sbjct: 75 AYLSQQQTPPFAMPVWHYLTL---HQPDKTRTELLNDVAGALALDDKLGRSTN------- 124
Query: 512 TQLSGGQKQRIAIARAILK-----NP--KILLLDEATSALDAESERIVQDALVKIMTSRT 564
QLSGG+ QR+ +A +L+ NP ++LLLDE ++LD + + L +
Sbjct: 125 -QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGL 183
Query: 565 TVVVA-HRLT-TIRNADLIAVVHQGKIVEKGTHDELIKDP 602
+V++ H L T+R+A ++ +GK++ G +E++ P
Sbjct: 184 AIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPP 223
|
Length = 248 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 5e-14
Identities = 72/245 (29%), Positives = 112/245 (45%), Gaps = 54/245 (22%)
Query: 1052 RPDVQIFRNLCLSIPSGKTVALVGESGSGKS-TVIALIERFYDPDSGHVLLDN------- 1103
+ + RNL S+ G+T+A+VGESGSGKS T +AL+ R + G V D
Sbjct: 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALM-RLLEQAGGLVQCDKMLLRRRS 84
Query: 1104 ---IELPKFKLSWLRQ----QMGLVSQEPVL-----------FNETIRTNIAYGKQGGAT 1145
IEL + + +R M ++ QEP+ E+IR + QG +
Sbjct: 85 RQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLH-----QGASR 139
Query: 1146 EEEIIAA------TEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPK 1199
EE ++ A A +S PH QLSGG +QR+ IA A+ P
Sbjct: 140 EEAMVEAKRMLDQVRIPEAQTILSRYPH-----------QLSGGMRQRVMIAMALSCRPA 188
Query: 1200 ILLLDEATSALDAESE-RVVQ--DALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVI 1255
+L+ DE T+ALD + +++Q L++ M + + + H + + AD + V+ G
Sbjct: 189 VLIADEPTTALDVTIQAQILQLIKVLQKEM-SMGVIFITHDMGVVAEIADRVLVMYQGEA 247
Query: 1256 AEQGS 1260
E GS
Sbjct: 248 VETGS 252
|
Length = 623 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 5e-14
Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 34/209 (16%)
Query: 382 FRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDI 441
F Y +P +Q S H+P+G L G +G+GK+T++ L+ +P+ GE+L + I
Sbjct: 9 FDYHDQPLLQ---QISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65
Query: 442 KK------LQLKWIREKIGLVSQEPILFATSLRENIAYG-KENATDQEIRTAIELANAAK 494
KK QL ++ + G+ P L +LREN Y + I L +
Sbjct: 66 KKDLCTYQKQLCFVGHRSGI---NPYL---TLRENCLYDIHFSPGAVGITELCRLFSLEH 119
Query: 495 FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD 554
ID P GL LS GQK+++A+ R + K+ LLDE ALD E +
Sbjct: 120 LID-YPCGL----------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALD---ELSLLT 165
Query: 555 ALVKIMTSR----TTVVVAHRLTTIRNAD 579
+ KI R ++ +H+ + AD
Sbjct: 166 IITKIQEHRAKGGAVLLTSHQDLPLNKAD 194
|
Length = 200 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 7e-14
Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 8/158 (5%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW 448
++Q SLH+ G L+G +G+GK+T++ + +G ++ DG DI Q
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 449 I-REKIGLVSQEPILFA-TSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTM 506
I RE + +V + +F+ ++ EN+A G A + + I+ + P+ +
Sbjct: 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFPRLHERR 131
Query: 507 AGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
GT +SGG++Q +AI RA++ P++LLLDE + L
Sbjct: 132 IQRAGT-MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
|
Length = 237 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 9e-14
Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 19/222 (8%)
Query: 1047 FKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDN--I 1104
F+Y D + + L L LVG +G GKST+ + P G VL +
Sbjct: 9 FRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65
Query: 1105 ELPKFKLSWLRQQMGLVSQEP--VLFNETIRTNIAYG-KQGGATEEEIIAATEASNAHNF 1161
+ K L LRQQ+ V Q+P +F I ++IA+ + G E EI A
Sbjct: 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEI--TRRVDEALTL 123
Query: 1162 ISALPHGYETNVGERGVQ-LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQD 1220
+ A + + +Q LS GQK+R+AIA A++ + LLLDE T+ LD +
Sbjct: 124 VDA------QHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIA 177
Query: 1221 ALERVMVNRTTVVV-AHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
+ R++ V++ +H + I +D + V++ G I G+
Sbjct: 178 IIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA 219
|
Length = 271 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 34/217 (15%)
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVL---LDNIELPKFKLSWLR 1115
+ + G+ +G +G+GK+T I ++ P SG D + P+ +R
Sbjct: 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK----VR 65
Query: 1116 QQMGLVSQEPVLFNE-TIRTNIA-----YGKQGGATEEEIIAATEASNAHNFISALPHGY 1169
+ +G+V Q + + T R N+ YG EE E + L
Sbjct: 66 RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLE-------LFELGEAA 118
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR 1229
+ VG SGG ++R+ IA +++ P +L LDE T+ LD + R + D + +
Sbjct: 119 DRPVG----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEG 174
Query: 1230 TTVVVAHRLTTI------KNADIIAVVKNGVIAEQGS 1260
T++ LTT K D IA++ +G I +G+
Sbjct: 175 VTIL----LTTHYMEEADKLCDRIAIIDHGRIIAEGT 207
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 2e-13
Identities = 71/259 (27%), Positives = 114/259 (44%), Gaps = 40/259 (15%)
Query: 1026 SKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVI 1085
S D + + + L CV F ++ N+ + K ++G SGSGKST++
Sbjct: 17 SDDIILRVKN------LYCV-FDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLV 69
Query: 1086 A-------------LIERFY-DPDSGHVLLDNIELPK----FKLSWLRQQMGLVSQEP-- 1125
+ Y + L K FK LR+++ +V Q P
Sbjct: 70 THFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKE--LRRRVSMVFQFPEY 127
Query: 1126 VLFNETIRTNIAYGKQG-GATEEEIIAATEASNAHNFISALPHGYETNVGERG-VQLSGG 1183
LF +TI +I +G G + E A A N + G + + ER LSGG
Sbjct: 128 QLFKDTIEKDIMFGPVALGVKKSE--AKKLAKFYLNKM-----GLDDSYLERSPFGLSGG 180
Query: 1184 QKQRIAIARAVLKNPKILLLDEATSALDAESER-VVQDALERVMVNRTTVVVAHRLTTI- 1241
QK+R+AIA + P+IL+ DE T+ LD + E ++Q L+ N+T V+ H + +
Sbjct: 181 QKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVL 240
Query: 1242 KNADIIAVVKNGVIAEQGS 1260
+ AD + V+ G I + G+
Sbjct: 241 EVADEVIVMDKGKILKTGT 259
|
Length = 320 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 65/246 (26%), Positives = 122/246 (49%), Gaps = 42/246 (17%)
Query: 1040 IELRCVS--FKYPT----RPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD 1093
+E+R +S F+Y T R V+ + L ++ G+T+A++GE+GSGKST+ ++ +
Sbjct: 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 1094 PDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPV-----------LFNETIRTNIAYGKQG 1142
P SG +L+D+ L S+ Q++ ++ Q+P + + +R N +
Sbjct: 65 PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDL--EP 122
Query: 1143 GATEEEIIAA-TEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKIL 1201
E++II + + S PH L+ GQKQR+ +ARA++ PK++
Sbjct: 123 EQREKQIIETLRQVGLLPDHASYYPH-----------MLAPGQKQRLGLARALILRPKVI 171
Query: 1202 LLDEATSALDAESERVVQDALERVMVNR------TTVVVAHRLTTIKN-ADIIAVVKNGV 1254
+ DEA ++LD ++ L +M+ + + V L +K+ +D + V+ G
Sbjct: 172 IADEALASLDMS----MRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGE 227
Query: 1255 IAEQGS 1260
+ E+GS
Sbjct: 228 VVERGS 233
|
Length = 267 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-13
Identities = 62/259 (23%), Positives = 123/259 (47%), Gaps = 42/259 (16%)
Query: 1040 IELRCVSFKY----PTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD 1095
I+++ + + PT +++ N+ + I G+ +A++G++GSGK+T I + PD
Sbjct: 3 IKVKNIVKIFNKKLPT--ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD 60
Query: 1096 SGHVLL--------------------DNIELPKFK----LSWLRQQMGLVSQ--EPVLFN 1129
+G + I+ +FK + +R+++G+V Q E LF
Sbjct: 61 TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE 120
Query: 1130 ETIRTNIAYGKQG-GATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRI 1188
+TI +I +G G ++EE A + + + + L Y + +LSGGQK+R+
Sbjct: 121 QTIEKDIIFGPVSMGVSKEE---AKKRAAKYIELVGLDESY---LQRSPFELSGGQKRRV 174
Query: 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN-RTTVVVAHRLTTI-KNADI 1246
A+A + P L+ DE T+ LD + + + + + + +T ++V H L + +
Sbjct: 175 ALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR 234
Query: 1247 IAVVKNG-VIAEQGSHDAL 1264
K+G +I + ++D L
Sbjct: 235 TIFFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-13
Identities = 64/266 (24%), Positives = 117/266 (43%), Gaps = 50/266 (18%)
Query: 374 EIELRDVYFRYPARP--EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA 431
+I+++++ + + E++ S+ + G A++GQ+GSGK+T I + PD
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 432 GEVLIDGIDIKKL------------------------QLKWIREKIGLVSQ--EPILFAT 465
G + D K ++K IR ++G+V Q E LF
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 466 SLRENIAYG-------KENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGT-QLSGG 517
++ ++I +G KE A AAK+I+ + GLD + +LSGG
Sbjct: 122 TIEKDIIFGPVSMGVSKEEA----------KKRAAKYIELV--GLDESYLQRSPFELSGG 169
Query: 518 QKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS-RTTVVVAHRLTTI- 575
QK+R+A+A + P L+ DE T+ LD + + + + + +T ++V H L +
Sbjct: 170 QKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVL 229
Query: 576 RNADLIAVVHQGKIVEKGTHDELIKD 601
GKI++ G +++ D
Sbjct: 230 EWTKRTIFFKDGKIIKDGDTYDILSD 255
|
Length = 305 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 25/223 (11%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKST---VISLVERFYDPDAGEVLIDGIDIKKLQ 445
+ +I G +L V G A++G +GSGKST I+ Y+ +G +L G D+ +L+
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS-YEVTSGTILFKGQDLLELE 70
Query: 446 LKWI-REKIGLVSQEP-----ILFATSLRENIAYGKENA-TDQEIRTAIELANAAKFIDK 498
R + L Q P + LR + NA ++L + K +
Sbjct: 71 PDERARAGLFLAFQYPEEIPGVSNLEFLRSAL-----NARRSARGEEPLDLLDFLKLLKA 125
Query: 499 LPKGLDTMAGEHGTQ-----LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
L M E + SGG+K+R I + L PK+ +LDE S LD ++ +IV
Sbjct: 126 KLALLG-MDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVA 184
Query: 554 DALVKIMT-SRTTVVVAH--RLTTIRNADLIAVVHQGKIVEKG 593
+ + ++ R+ +++ H RL D + V+ G+IV+ G
Sbjct: 185 EGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 72/249 (28%), Positives = 111/249 (44%), Gaps = 36/249 (14%)
Query: 1053 PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD----SGHVLLDNIELPK 1108
+ + L++ G+ +ALVG SGSGKS A +G VLLD +
Sbjct: 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPV-- 71
Query: 1109 FKLSWLRQQM-GLVSQEP-VLFN--ETIR-----TNIAYGKQGGATEEEIIAATEA---S 1156
LR + + Q P FN T+ T +A GK A + + AA EA
Sbjct: 72 -APCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLE 128
Query: 1157 NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER 1216
NA + P ++SGG QR+ IA A+L ++ DE T+ LD ++
Sbjct: 129 NAARVLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQA 177
Query: 1217 VVQDALERVMVNRT--TVVVAHRLTTI-KNADIIAVVKNGVIAEQGSHDALMKITDGAYA 1273
+ D LE ++ R ++V H + + + AD +AV+ +G I EQG + L A
Sbjct: 178 RILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVT 237
Query: 1274 -SLVALHVS 1281
SLV+ H++
Sbjct: 238 RSLVSAHLA 246
|
Length = 254 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 4e-13
Identities = 64/245 (26%), Positives = 104/245 (42%), Gaps = 32/245 (13%)
Query: 1058 FRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDN-----IELPKFKLS 1112
R++ + G+ + +VGESGSGK+T++ I PD+G V +L + +S
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDL--YTMS 79
Query: 1113 ------WLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALP 1166
LR + G V Q P R + G E + A A + N +
Sbjct: 80 EAERRRLLRTEWGFVHQNP-------RDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQ 132
Query: 1167 HGYE------TNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQD 1220
E + + SGG +QR+ IAR ++ P+++ +DE T LD + + D
Sbjct: 133 DWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 192
Query: 1221 ALERVMVNR--TTVVVAHRLTTIK-NADIIAVVKNGVIAEQGSHDALMKITDGAYASLVA 1277
L ++ V+V H L + AD + V+K G + E G D ++ D +
Sbjct: 193 LLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTD---RVLDDPHHPYTQ 249
Query: 1278 LHVSS 1282
L VSS
Sbjct: 250 LLVSS 254
|
Length = 258 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 4e-13
Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 45/188 (23%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLI----DGIDIKKLQLK 447
+ SL V +G L G SGSGKST++ + Y PD G++L+ + +D+ + +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 448 WI----REKIGLVSQ---------------EPILFATSLRENIAYGKENATDQEIRTAIE 488
+ R IG VSQ EP+L A + +A K
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLL-ARGVPREVARAK------------- 131
Query: 489 LANAAKFIDKL--PKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 546
AA + +L P+ L ++A SGG++QR+ IAR + + ILLLDE T++LDA
Sbjct: 132 ---AADLLTRLNLPERLWSLAP---ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDA 185
Query: 547 ESERIVQD 554
+ +V +
Sbjct: 186 TNRAVVVE 193
|
Length = 235 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 5e-13
Identities = 58/268 (21%), Positives = 113/268 (42%), Gaps = 57/268 (21%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERF--YDPDAGEVL------------------- 435
S + G ++G+SG+GKS ++ ++ Y+P +G ++
Sbjct: 20 SFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79
Query: 436 --------------IDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQ 481
+D ++ + IR++I ++ Q FA YG + D
Sbjct: 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT--FAL-------YGDDTVLDN 130
Query: 482 EIRTAIELA-NAAKFIDKLPKGLDTMAGEH-----GTQLSGGQKQRIAIARAILKNPKIL 535
+ E+ + + + ++ + H LSGG+KQR+ +AR + K P +
Sbjct: 131 VLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLF 190
Query: 536 LLDEATSALDAESERIVQDALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGKIVEK 592
L DE T LD ++ ++V +AL + + + + V+ +H I + +D + G+I E+
Sbjct: 191 LADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEE 250
Query: 593 GTHDELIKDPEGPYTQLVRLQEGSKEAE 620
GT DE++ + + V E E E
Sbjct: 251 GTPDEVVAV----FMEGVSEVEKECEVE 274
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 5e-13
Identities = 42/207 (20%), Positives = 87/207 (42%), Gaps = 50/207 (24%)
Query: 393 FAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ-LKWIRE 451
S V +G + G G+G++ + + P +GE+ +DG + + IR
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 452 KIGLVSQEPI---LFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMA 507
I V ++ L S+ ENIA L++
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENIA----------------LSS---------------- 103
Query: 508 GEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVV 567
LSGG +Q++ +AR + ++P++L+LDE T +D ++ + + ++ + V+
Sbjct: 104 -----LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
Query: 568 VAHRLTT-----IRNADLIAVVHQGKI 589
+ +++ + D I V+++G+I
Sbjct: 159 L---ISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 6e-13
Identities = 64/217 (29%), Positives = 102/217 (47%), Gaps = 24/217 (11%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116
+ NL + IP G A++G +G GKST++ + R P GHV LD + + + +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 1117 QMGLVSQEPVLFNE-TIRTNIAYGK---QGGAT---EEEIIAATEASNAHNFISALPHGY 1169
++GL++Q + T++ +A G+ Q T +E+ A T+A A
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV 141
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VN 1228
+T LSGGQ+QR IA + + I+LLDE T+ LD + D LE + +N
Sbjct: 142 DT--------LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQ---IDLLELLSELN 190
Query: 1229 R----TTVVVAHRLT-TIKNADIIAVVKNGVIAEQGS 1260
R T V H L + A + ++ G I QG+
Sbjct: 191 REKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGA 227
|
Length = 265 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 6e-13
Identities = 59/234 (25%), Positives = 103/234 (44%), Gaps = 16/234 (6%)
Query: 367 TLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERF 426
K G I F+ EV+ G S + G +G +G+GK+T + ++
Sbjct: 12 VYSKEPGLIGSLKSLFK-RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL 70
Query: 427 YDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFA--TSLRENIAYGKENATDQEIR 484
P +GEV + G+ + W + + + + ++F T L ++ I
Sbjct: 71 LQPTSGEVRVAGL------VPW-KRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY 123
Query: 485 TAIELANAAKFIDKLPKGLDTMAGEHGT--QLSGGQKQRIAIARAILKNPKILLLDEATS 542
+ A K +D+L + LD QLS GQ+ R IA A+L P+IL LDE T
Sbjct: 124 D-LPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182
Query: 543 ALDAESERIVQDALVKIMTSRTTVVV--AHRLTTI-RNADLIAVVHQGKIVEKG 593
LD ++ +++ L + R T V+ +H + I A + V+ +G+++ G
Sbjct: 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 6e-13
Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 56/246 (22%)
Query: 396 FSLHVPSGTTAALVGQSGSGKS-TVISLVERFYDPD--AGEVLIDGIDIKKL---QLKWI 449
FSL +G T +VG+SGSGKS T +L+ G +G +I L +L +
Sbjct: 37 FSLR--AGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKL 94
Query: 450 R-EKIGLVSQEPILFATSLRENI--------------AYGKENATDQEIRT--AIELANA 492
R E+I ++ Q+P+ TSL + K A ++ +R A+++ A
Sbjct: 95 RAEQISMIFQDPM---TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEA 151
Query: 493 AKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIV 552
K + P H + SGG +QR+ IA A+L PK+L+ DE T+ALD V
Sbjct: 152 RKRMKMYP---------H--EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDV----TV 196
Query: 553 QDALVKIMT---------SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDP 602
Q +IMT + +++ H L + D + V++ G+ +E G ++ P
Sbjct: 197 Q---AQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQP 253
Query: 603 EGPYTQ 608
PY+
Sbjct: 254 SHPYSI 259
|
Length = 330 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 6e-13
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 30/228 (13%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIR------ 450
S +P G +G +G+GKST + ++ P +G+V ++G D + + +++R
Sbjct: 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVM 103
Query: 451 -EKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGE 509
+K+ L P L + + + I D E + L L+
Sbjct: 104 GQKLQLWWDLPALDSLEVLKLIY----EIPDDEFA-----ERLDFLTEIL--DLEGFLKW 152
Query: 510 HGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS-----RT 564
+LS GQ+ R +A A+L PK+L LDE T LD Q + + + +
Sbjct: 153 PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV----NAQANIREFLKEYNEERQA 208
Query: 565 TVVVA-HRLTTI-RNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610
TV++ H I D + ++ QG++V GT +L + GPY +
Sbjct: 209 TVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ-FGPYKEFS 255
|
Length = 325 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (180), Expect = 7e-13
Identities = 58/213 (27%), Positives = 103/213 (48%), Gaps = 20/213 (9%)
Query: 1047 FKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL 1106
F+ RP V L ++ + A +G +G+GK+T ++++ P SG VL+ ++
Sbjct: 938 FEPSGRPAVD---RLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI 994
Query: 1107 PKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIA-YGKQGGATEEEIIAATEASNAHNFISA 1164
+ L +RQ +G+ Q +LF+ T+ +I Y + G + EE EA
Sbjct: 995 -ETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDT---- 1049
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224
G E LSGG ++++++A A + + K+++LDE TS +D S R + D L +
Sbjct: 1050 ---GLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK 1106
Query: 1225 VMVNRTTVVVAHRLTTIKNADI----IAVVKNG 1253
RT ++ H + AD+ IA++ G
Sbjct: 1107 YRSGRTIIMSTHHM---DEADLLGDRIAIISQG 1136
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 8e-13
Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 18/205 (8%)
Query: 395 GFSLHVPSGTTAALVGQSGSGKST---VISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
SL V +G +L G++G+GKST V+S V + GE++ +G ++LQ IR+
Sbjct: 23 NVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYE-GEIIFEG---EELQASNIRD 78
Query: 452 K----IGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTM 506
I ++ QE L S+ ENI G E + A K + +L LD
Sbjct: 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQL--KLDIN 136
Query: 507 AGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR--T 564
L GQ+Q + IA+A+ K ++L+LDE T++L ++ D +++ + +
Sbjct: 137 PATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLD-IIRDLKAHGIA 195
Query: 565 TVVVAHRLTTIRN-ADLIAVVHQGK 588
+ ++H+L ++ +D I V+ G+
Sbjct: 196 CIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 8e-13
Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 36/246 (14%)
Query: 390 VQIFAGFSLHVPSGTTAALVGQSGSGKS----TVISLVERFYDPDAGEVLIDGIDIKKL- 444
V+ S+ + G LVG+SGSGKS + + + + A + D ID+ +L
Sbjct: 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS 79
Query: 445 ---QLKWIREKIGLVSQEPIL-------FATSLRENI-AYGKENATDQEI----RTAIEL 489
+ K + + ++ QEP L +NI A+ + Q R AIEL
Sbjct: 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIEL 139
Query: 490 ANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESE 549
+ D D M + +L+ G+ Q++ IA A+ P++L+ DE T+++ E
Sbjct: 140 LHRVGIKDHK----DIMR-SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSM----E 190
Query: 550 RIVQDALVKIMTS------RTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDP 602
Q + ++++ T ++++H L I AD I V++ G+ VE +EL+ P
Sbjct: 191 PTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMP 250
Query: 603 EGPYTQ 608
PYTQ
Sbjct: 251 HHPYTQ 256
|
Length = 330 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 9e-13
Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 23/235 (9%)
Query: 375 IELRDVYFRYPARPEVQIFAG-FSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
+ELR+V F Y + G +L + G L+G +GSGKST+ L+ Y P +GE
Sbjct: 323 LELRNVRFAYQ---DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIE-LANA 492
+L+DG + QL+ R+ V + LF L + A+ Q I ++ L A
Sbjct: 380 ILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG-----PEGKASPQLIEKWLQRLELA 434
Query: 493 AKFIDKLPKGLDTMAGE-HGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI 551
K G +LS GQK+R+A+ A+L+ IL+LDE + D R
Sbjct: 435 HK--------TSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRRE 486
Query: 552 VQDALVKIMTS--RTTVVVAHRLTTIRNADLIAVVHQGKIVEK--GTHDELIKDP 602
L+ ++ +T ++H +AD + + G++ E DE +D
Sbjct: 487 FYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDETARDA 541
|
Length = 546 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 63/230 (27%), Positives = 109/230 (47%), Gaps = 27/230 (11%)
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454
+L V +L+G +G+GK+TV + + FY P G +L+ G I+ L I G
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM-G 81
Query: 455 LVSQ-------------EPILFA--TSLRENIAYG--KENATDQEIRTAIELANAAKFID 497
+V E +L A L+ + G K A + A++ AA +++
Sbjct: 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALD--RAATWLE 139
Query: 498 KLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALV 557
++ GL A L+ GQ++R+ IAR ++ P+IL+LDE + L+ + E D L+
Sbjct: 140 RV--GLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPK-ETKELDELI 196
Query: 558 KIMTSRTTVVV---AHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPE 603
+ + V V H + + +D I VV+QG + GT +E+ +P+
Sbjct: 197 AELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNPD 246
|
Length = 255 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-12
Identities = 60/231 (25%), Positives = 113/231 (48%), Gaps = 28/231 (12%)
Query: 388 PEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLK 447
P V+ S +G AL+G++G+GKST++ ++ Y PDAG +LIDG ++++
Sbjct: 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG---QEMRFA 71
Query: 448 WIREK----IGLVSQE----PILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKL 499
+ ++ QE P + ++ EN+ G+ + + A + ++ L
Sbjct: 72 STTAALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHL 128
Query: 500 PKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA-ESERIVQDALVK 558
G+D LS GQ+Q + IA+A+ +N +++ DE TS+L A E E++ +++
Sbjct: 129 --GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLF--RVIR 184
Query: 559 IMTSRTTVV--VAHRLTTI-RNADLIAVVHQGKIVE------KGTHDELIK 600
+ + V+ V+HR+ I D I V G+ V + D+L++
Sbjct: 185 ELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVDRDQLVQ 235
|
Length = 501 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 41/230 (17%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH-------VLLDNIEL 1106
D + R + + G+ L+G +G+GK+T I ++ P SG V+ + E+
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREV 71
Query: 1107 PKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIA-----YGKQGGATEEEIIAATEASNAHN 1160
R+++G+V Q+ + +E T N+ YG G E I +
Sbjct: 72 --------RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLE 123
Query: 1161 FISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQD 1220
L Y SGG ++R+ IAR+++ P++L LDE T LD ++ V +
Sbjct: 124 AADRLVKTY-----------SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE 172
Query: 1221 ALERVMVNRTTVVVAHRLTT------IKNADIIAVVKNGVIAEQGSHDAL 1264
+E+ + + + LTT + D +A++ +G I +G+ + L
Sbjct: 173 YIEK-LKEEFGMTIL--LTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 30/222 (13%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKST---VIALIERFYDPDSGHVLLD--NI-ELPKF 1109
+I + + L++ G+ A++G +GSGKST I + Y+ G +L D +I EL
Sbjct: 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSPD 76
Query: 1110 KLSWLRQQMG--LVSQEPVLFNETIRT----NIAYGKQGGATEEEIIAATEASNAHNFIS 1163
+ R + G L Q PV + A + GA E +
Sbjct: 77 E----RARAGIFLAFQYPVEI-PGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELL- 130
Query: 1164 ALPHGYETNVGERGVQ--LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDA 1221
G + ER V SGG+K+R I + +L PK+ +LDE S LD ++ ++V +
Sbjct: 131 ----GLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEG 186
Query: 1222 LERVM-VNRTTVVVAHR---LTTIKNADIIAVVKNGVIAEQG 1259
+ + R +++ H L IK D + V+ +G I + G
Sbjct: 187 INALREEGRGVLIITHYQRLLDYIK-PDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 2e-12
Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 38/245 (15%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERF--YDPDSGHVLLD--------N 1103
++ +N+ +I G+ + ++G SG+GKS ++ ++ Y+P SG ++
Sbjct: 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGY 71
Query: 1104 IELPKFKLSWLRQQMGLVSQEPVLF---NETIRTNIAYGKQGGATEEEIIAATEASNA-H 1159
+E P G + E V F ++ +R I K+ + A
Sbjct: 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIR--KRIAIMLQRTFALYGDDTVLD 129
Query: 1160 NFISALPH-GYE--------------TNVGER----GVQLSGGQKQRIAIARAVLKNPKI 1200
N + AL GYE + R LSGG+KQR+ +AR + K P +
Sbjct: 130 NVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFL 189
Query: 1201 LLLDEATSALDAESERVVQDALERVMVNR--TTVVVAHRLTTIKN-ADIIAVVKNGVIAE 1257
L DE T LD ++ ++V +ALE + + V+ +H I++ +D ++NG I E
Sbjct: 190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKE 249
Query: 1258 QGSHD 1262
+G+ D
Sbjct: 250 EGTPD 254
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 2e-12
Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 16/229 (6%)
Query: 369 EKIEGEIELRDVYFRYPARPEVQIFA--GFSLHVPSGTTAALVGQSGSGKSTVISLVERF 426
+K IEL+DV+ A + FA L + G +VG++G GKST+ L
Sbjct: 332 DKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL 391
Query: 427 YDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIR-- 484
Y P GE+L+DG + R+ + + LF + + G+ + D +
Sbjct: 392 YIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD--EGEHASLDNAQQYL 449
Query: 485 TAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
+E+A+ K D G T T LS GQ++R+A+ A L++ ILL DE +
Sbjct: 450 QRLEIADKVKIED---GGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQ 501
Query: 545 DAESERIVQDALVKIMTSR--TTVVVAHRLTTIRNADLIAVVHQGKIVE 591
D +R + L+ + + T ++++H AD I + G IV+
Sbjct: 502 DPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 3e-12
Identities = 57/234 (24%), Positives = 96/234 (41%), Gaps = 29/234 (12%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI 1104
K + VQ ++ IP G+ V +G +G+GKST + ++ P SG V ++
Sbjct: 30 FHRKERSIEAVQ---DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGK 86
Query: 1105 ELPKFKLSWLRQ---QMGLVSQ-EPVL-FNETIRTN-IAYGKQGGATEEEIIAATEASNA 1158
+ + + +LR MG Q L +++ + Y EI A
Sbjct: 87 DPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---------EIPDDEFAERL 137
Query: 1159 HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV 1218
L E + +LS GQ+ R +A A+L PK+L LDE T LD ++ +
Sbjct: 138 DFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI 195
Query: 1219 QDALERVMVNRTTVVVAHRLTTIKNADI------IAVVKNGVIAEQGSHDALMK 1266
++ L+ R V+ LTT DI + ++ G + G+ L +
Sbjct: 196 REFLKEYNEERQATVL---LTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246
|
Length = 325 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 52/201 (25%), Positives = 102/201 (50%), Gaps = 26/201 (12%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+ L VS + R ++ ++ L + GK + L+G +G+GKST++ ++ PD G +
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAH 1159
+ K ++ ++ Q++ L + P+ N +R + G +E+I+ A + A
Sbjct: 62 KRN----GKLRIGYVPQKLYLDTTLPLTVNRFLRL------RPGTKKEDILPALKRVQAG 111
Query: 1160 NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQ 1219
+ I A +LSGG+ QR+ +ARA+L P++L+LDE T +D + +
Sbjct: 112 HLIDAPMQ-----------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALY 160
Query: 1220 DALE--RVMVNRTTVVVAHRL 1238
D ++ R ++ ++V+H L
Sbjct: 161 DLIDQLRRELDCAVLMVSHDL 181
|
Length = 251 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 4e-12
Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 39/244 (15%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTV---ISLVER-FYDPDAGEVLIDGIDIKKLQLKWIREK 452
S+ + G LVG+SGSGKS + I V + + A + D ID+ +L + R+
Sbjct: 27 SMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKL 86
Query: 453 IG----LVSQEPILFATSLRENIAYGKENATDQEI-----------------RTAIELAN 491
+G ++ QEP + L + G++ Q I R AIEL +
Sbjct: 87 VGHNVSMIFQEP---QSCLDPSERVGRQLM--QNIPGWTYKGRWWQRFGWRKRRAIELLH 141
Query: 492 AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI 551
D K D M +L+ G+ Q++ IA A+ P++L+ DE T+A++ ++
Sbjct: 142 RVGIKD--HK--DAM-RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQ 196
Query: 552 VQDALVKIMTSRTTVV--VAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
+ L ++ + T + ++H L + AD I V++ G+ VE EL+ P PYTQ
Sbjct: 197 IFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQ 256
Query: 609 -LVR 611
L+R
Sbjct: 257 ALIR 260
|
Length = 330 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 5e-12
Identities = 52/216 (24%), Positives = 97/216 (44%), Gaps = 28/216 (12%)
Query: 393 FAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ-LKWIRE 451
S V +G + G G+G++ + + +GE+L+DG ++ I+
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 452 KIGLVS----QEPILFATSLRENIAYG--KENATDQEIRTAIELANAAKFIDKL---PKG 502
I V E ++ S+ ENI + + I E A A ++I +L
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394
Query: 503 LDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALD--AESE--RIVQDALVK 558
+ G LSGG +Q++ +AR + +PK+L+LDE T +D A++E R++++ +
Sbjct: 395 PEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE 450
Query: 559 ----IMTSRTTVVVAHRLTTIRNADLIAVVHQGKIV 590
+M S + + +D I V+ +G+IV
Sbjct: 451 GKAILMISSELPEL------LGLSDRILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 5e-12
Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 32/233 (13%)
Query: 398 LHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVS 457
L G L+G +G+GK+T++ + P G V + G K IG V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 458 QEPIL---FATSLRENIAYGKEN----------ATDQEIRTAIELANAAKFIDKLPKGLD 504
Q F S+ + G+ A +R A+ + D+ P G
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-PVG-- 112
Query: 505 TMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRT 564
+LSGGQ+QR+ +ARA+ P +LLLDE + LD ++ ++ + +++ + T
Sbjct: 113 --------ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT 164
Query: 565 TVV-VAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGS 616
++ H L V+ G+++ GT +L +DP P+ + + S
Sbjct: 165 AILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQL-QDPA-PWMTTFGVSDSS 215
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 5e-12
Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 47/202 (23%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
A L C R + +F L ++ +G+ V + G +G+GK++++ ++ PD+G
Sbjct: 4 ARNLACE------RDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGE 57
Query: 1099 VLLDNIEL----PKF--KLSWLRQQMG----LVSQEPVLFNETIRTNIAYGKQGGATEEE 1148
VL + ++ L +L Q G L + E + F + + G +E
Sbjct: 58 VLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRL--------HGPGDDEA 109
Query: 1149 IIAATEASNAHNFISALPHGYETNVGERGV------QLSGGQKQRIAIARAVLKNPKILL 1202
+ A VG G QLS GQ++R+A+AR L + +
Sbjct: 110 LWEALAQ-----------------VGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWI 152
Query: 1203 LDEATSALDAESERVVQDALER 1224
LDE +A+D + ++ L +
Sbjct: 153 LDEPFTAIDKQGVARLEALLAQ 174
|
Length = 204 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 6e-12
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 17/172 (9%)
Query: 386 ARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ 445
R +F+G S + +G L G +GSGK+T++ L+ P AG + +DG DI
Sbjct: 11 VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI---D 67
Query: 446 LKWIREKIGLVS-QEPILFATSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKG 502
+ E + + + A ++ EN+ + + +I A+E L
Sbjct: 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVG-------LAPL 120
Query: 503 LDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD 554
G LS GQK+R+A+AR ++ N I +LDE T+ALDA + + +
Sbjct: 121 AHLPFGY----LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
|
Length = 207 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 6e-12
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 20/222 (9%)
Query: 1040 IELRCVSFKYPTRPDVQIFRN-LCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
+ELR V F Y D + L+I G+ V L+G +GSGKST+ L+ Y P SG
Sbjct: 323 LELRNVRFAYQ---DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNA 1158
+LLD + +L R+ V + LF++ + G +G A+ + I +
Sbjct: 380 ILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQR--- 430
Query: 1159 HNFISALPHGYETNVGE-RGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
L H N G ++LS GQK+R+A+ A+L+ IL+LDE + D R
Sbjct: 431 ----LELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRRE 486
Query: 1218 VQDALERVM--VNRTTVVVAHRLTTIKNADIIAVVKNGVIAE 1257
L ++ +T ++H +AD + ++NG ++E
Sbjct: 487 FYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 6e-12
Identities = 54/197 (27%), Positives = 84/197 (42%), Gaps = 30/197 (15%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERF--------YDPDSGHVLLDNIELPK 1108
+ RNL L I G VA+VG+SG+GK+T++ +I Y PDSG V E+PK
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV-----EVPK 452
Query: 1109 FKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHG 1168
+S L EP TI ++ EI+ S+A +
Sbjct: 453 NTVSALIPG----EYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFS-- 506
Query: 1169 YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN 1228
+LS GQK+R +A+ + + P +LL+DE + LD + V + +
Sbjct: 507 ----------ELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE 556
Query: 1229 RT-TVVVAHRLTTIKNA 1244
T++V + NA
Sbjct: 557 AGITLIVVTHRPEVGNA 573
|
Length = 593 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 8e-12
Identities = 61/236 (25%), Positives = 114/236 (48%), Gaps = 36/236 (15%)
Query: 1046 SFKYPT----RPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLL 1101
+F+Y T R V+ + + ++ G+T+A++GE+GSGKST+ ++ +P SG +L+
Sbjct: 13 TFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILI 72
Query: 1102 DNIELPKFKLSWLRQQMGLVSQEP-VLFNETIRTNIAYGKQGGATEEEIIAATEASNAH- 1159
++ L S+ +++ ++ Q+P N R I G + + T+
Sbjct: 73 NDHPLHFGDYSFRSKRIRMIFQDPNTSLNP--RLRI-----GQILDFPLRLNTDLEPEQR 125
Query: 1160 --------NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
+ LP N L+ GQKQR+A+ARA++ PKI++ DEA ++LD
Sbjct: 126 RKQIFETLRMVGLLPD--HANYYPH--MLAPGQKQRVALARALILRPKIIIADEALASLD 181
Query: 1212 AESERVVQDALERVMVNR------TTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
++ L +M+ + + V + IK+ +D + V+ G + E+GS
Sbjct: 182 MS----MRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGS 233
|
Length = 267 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-11
Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIE---LPKFK 1110
+V + + G+T++LVGESGSGKST + R + G ++ + L K
Sbjct: 336 EVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGK 395
Query: 1111 LSWLRQQMGLVSQEPVL-----------FNETIRT-NIAYGKQGGATEEEIIAATEASNA 1158
L LR+ + + Q+P E +R + GK A ++
Sbjct: 396 LQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPE 455
Query: 1159 HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
H + PH + SGGQ+QRI IARA+ NPK+++ DEA SALD
Sbjct: 456 HAW--RYPH-----------EFSGGQRQRICIARALALNPKVIIADEAVSALD 495
|
Length = 623 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 20/155 (12%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIR 450
++ + SL + G L+G +G+GKST++ +V PD G + +G KL++ ++
Sbjct: 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG----KLRIGYVP 73
Query: 451 EKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEH 510
+K+ L + P+ LR + ++I A++ A ID P
Sbjct: 74 QKLYLDTTLPLTVNRFLRL-----RPGTKKEDILPALKRVQAGHLIDA-PM--------- 118
Query: 511 GTQLSGGQKQRIAIARAILKNPKILLLDEATSALD 545
+LSGG+ QR+ +ARA+L P++L+LDE T +D
Sbjct: 119 -QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 1e-11
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 28/167 (16%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL------Q 445
+F+G S + +G + G +G+GK++++ ++ PDAGEVL G I++
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQD 75
Query: 446 LKWIREKIG----LVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPK 501
L ++ + G L + E + F L D+ + A+ A F D +P
Sbjct: 76 LLYLGHQPGIKTELTALENLRFYQRLHGP-------GDDEALWEALAQVGLAGFED-VPV 127
Query: 502 GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
QLS GQ++R+A+AR L + +LDE +A+D +
Sbjct: 128 R----------QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQG 164
|
Length = 204 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-11
Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 22/192 (11%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD----SGHVLLDN--IELPKF 1109
+ +N+ G+ +A++G SG+GK+T++ + F P SG VLL+ I+ +
Sbjct: 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPIDAKEM 97
Query: 1110 KL--SWLRQQ----MGLVSQEPVLFNETIRT-NIAYGKQGGATEEEIIAATEASNAHNFI 1162
+ ++++Q L +E ++F +R K+ +E++ A N
Sbjct: 98 RAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTR 157
Query: 1163 SALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDAL 1222
V R LSGG+++R+A A +L +P +L DE TS LD+ V L
Sbjct: 158 --------IGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVL 209
Query: 1223 ERVMVNRTTVVV 1234
+ + T++
Sbjct: 210 KGLAQKGKTIIC 221
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-11
Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 39/238 (16%)
Query: 388 PEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLK 447
V +L V G AL+G++G+GKST++ ++ ++P G + I+ I+ KL K
Sbjct: 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK 75
Query: 448 WIRE-KIGLVSQE-PILFATSLRENIAYGKE--------NATD---QEIRTAIELANAAK 494
+ IG++ QE ++ ++ EN+ G+ N D +R A+ L
Sbjct: 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL 135
Query: 495 FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL-DAESERIVQ 553
+D LD LS KQ + IA+ ++ + K++++DE TS+L + E
Sbjct: 136 KVD-----LDEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEV----- 181
Query: 554 DALVKIMTS-----RTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKG-----THDELIK 600
D L IM V ++H+L IR D V+ G V G ++D++++
Sbjct: 182 DYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVR 239
|
Length = 510 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-11
Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 33/188 (17%)
Query: 1044 CVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKS-TVIALIERFYDPD--SGHVL 1100
V+F P DV +L S+ +G+T+ +VGESGSGKS T AL+ G
Sbjct: 19 RVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT 77
Query: 1101 LDNIE---LPKFKLSWLR-QQMGLVSQEPVL-----------FNETIRTNIAYGKQGGAT 1145
+ E LP+ +L+ LR +Q+ ++ Q+P+ E + + K A
Sbjct: 78 FNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAE-AF 136
Query: 1146 EEEI--IAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLL 1203
EE + + A + A + PH + SGG +QR+ IA A+L PK+L+
Sbjct: 137 EESVRMLDAVKMPEARKRMKMYPH-----------EFSGGMRQRVMIAMALLCRPKLLIA 185
Query: 1204 DEATSALD 1211
DE T+ALD
Sbjct: 186 DEPTTALD 193
|
Length = 330 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 4e-11
Identities = 66/215 (30%), Positives = 96/215 (44%), Gaps = 22/215 (10%)
Query: 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVL-------LDNIELPKFKLS 1112
N L I G+ L+G SGSGKST++ + G VL +D L
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 1113 WLRQ-QMGLVSQEPVLFN-ETIRTNIAYG--KQGGATEEEIIAATEASNAHNFISALPHG 1168
LR ++ +V Q+ L T+ N+A+G QG E E L
Sbjct: 102 RLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVG----LAQW 157
Query: 1169 YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-- 1226
+ GE LSGG +QR+ +ARA ILL+DE SALD +QD L +
Sbjct: 158 ADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSK 213
Query: 1227 VNRTTVVVAHRL-TTIKNADIIAVVKNGVIAEQGS 1260
+ +T V V+H L +K + IA+++ G I + G+
Sbjct: 214 LKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGT 248
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 59/191 (30%), Positives = 86/191 (45%), Gaps = 33/191 (17%)
Query: 1063 LSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF---KLSWLR-QQM 1118
L + G+T+AL+GESGSGKST++A++ D SG V L L + + LR + +
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHV 90
Query: 1119 GLVSQE----PVLFNETIRTNIAY-----GKQGGATEEEIIAATEASNAHNFISALPHGY 1169
G V Q P L N+ G+ + A E + LP
Sbjct: 91 GFVFQSFMLIPTL---NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP--- 144
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR 1229
QLSGG++QR+A+ARA P +L DE T LD ++ + D L +NR
Sbjct: 145 --------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLL--FSLNR 194
Query: 1230 ----TTVVVAH 1236
T ++V H
Sbjct: 195 EHGTTLILVTH 205
|
Length = 228 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 5e-11
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 513 QLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRL 572
QLSGG+K R+A+A+ +L+NP +LLLDE T+ LD ES +++AL + T ++V+H
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE--YPGTVILVSHDR 127
Query: 573 TTIRN-ADLIAVVHQGK 588
+ A I + GK
Sbjct: 128 YFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 5e-11
Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 24/235 (10%)
Query: 390 VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA--GEVLIDGIDIKKLQLK 447
V+ G L V G L G++G+GKST++ ++ Y GE+ G +K ++
Sbjct: 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIR 73
Query: 448 WIREK-IGLVSQEPILFAT-SLRENIAYGKE-------NATDQEIRTAIELANAAKFIDK 498
I ++ QE L S+ ENI G E A + A L + +D
Sbjct: 74 DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQ-LDA 132
Query: 499 LPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVK 558
GGQ+Q + IA+A+ K ++L+LDE +S+L + I+ D +++
Sbjct: 133 DNVTRPVG------DYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLD-IIR 185
Query: 559 IMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610
+ + V ++H+L ++ D I V+ G+ V T D + T +V
Sbjct: 186 DLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV--ATKDMSTMSEDDIITMMV 238
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 6e-11
Identities = 58/226 (25%), Positives = 95/226 (42%), Gaps = 57/226 (25%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI 1104
VS P P +I +++ LS G + ++G +G+GKST++ ++ +G
Sbjct: 10 VSKVVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPA-- 65
Query: 1105 ELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAYG------------------------ 1139
P K+ G + QEP L T+R N+ G
Sbjct: 66 --PGIKV-------GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDAD 116
Query: 1140 -KQGGATEEEIIAATEASNAHNFISAL---------PHGYETNVGERGVQLSGGQKQRIA 1189
A + E+ +A++A + L P + +V + LSGG+++R+A
Sbjct: 117 MDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPW-DADVTK----LSGGERRRVA 171
Query: 1190 IARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVA 1235
+ R +L P +LLLDE T+ LDAES LE+ + VVA
Sbjct: 172 LCRLLLSKPDMLLLDEPTNHLDAES----VAWLEQHLQEYPGTVVA 213
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 7e-11
Identities = 46/219 (21%), Positives = 93/219 (42%), Gaps = 25/219 (11%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ--LKWIREKIG 454
S V +G + G +G+G+S ++ + P +G +L++G D+ + R +
Sbjct: 278 SFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLA 337
Query: 455 LVSQEPILFATSLRENIAYGKENATDQEIRTAIEL-----------ANAAKFIDKL---P 500
V ++ L ++A EN A + I++
Sbjct: 338 YVPEDRHGHGLVLDLSLA---ENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA 394
Query: 501 KGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM 560
D A LSGG +Q++ +AR + + P +L+ + T LD + + + L+++
Sbjct: 395 PSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR 450
Query: 561 TSRTTV-VVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDE 597
+ V +++ L I +D IAV+++G+IV +E
Sbjct: 451 DAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489
|
Length = 501 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 7e-11
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 42/221 (19%)
Query: 1068 GKTVALVGESGSGKST----VIALIERFYDPDSGHVLLDNIELPKF-KLSWL--RQQMGL 1120
G+T+ +VGESG GKST +I L++ G V +L W R + +
Sbjct: 47 GETLGVVGESGCGKSTFARAIIGLVK----ATDGEVAWLGKDLLGMKDDEWRAVRSDIQM 102
Query: 1121 VSQEPV-----------LFNETIRTNIAYGKQGGATEEEIIAA--TEASNAHNFISALPH 1167
+ Q+P+ + E +RT + K ++ + A + N I+ PH
Sbjct: 103 IFQDPLASLNPRMTIGEIIAEPLRT--YHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPH 160
Query: 1168 GYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE-RVVQ--DALER 1224
+ SGGQ QRI IARA++ PK+++ DE SALD + +VV L+R
Sbjct: 161 -----------EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQR 209
Query: 1225 VMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264
M + + +AH L +K+ +D + V+ G E G++D +
Sbjct: 210 EM-GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 7e-11
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 28/167 (16%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116
+F L ++ +G+ + + G +GSGK+T++ ++ P +G VLL+ L + S R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 1117 QMGLVSQEPVLFNETIRTNIAYGKQGGATE--EEIIAATEASNAHNFISALPHGYETNVG 1174
+ L + ++ N+ + + E EE +A VG
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALA--------------------RVG 114
Query: 1175 ERGV------QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE 1215
G QLS GQ++R+A+AR +L + +LDE T+ALD
Sbjct: 115 LNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGV 161
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 8e-11
Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 26/234 (11%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
I+ R V +Y + V L + G+ L+G +G+GK+T + ++ PD+G
Sbjct: 7 PIDFRNVEKRYGDKLVVD---GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGS 63
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNI-AYGKQGGATEEEIIAATEAS 1156
+ L +P + RQ++G+V Q L + T+R N+ +G+ G + A
Sbjct: 64 ISLCGEPVPS-RARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPL 122
Query: 1157 NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER 1216
+ L + + VGE LSGG K+R+ +ARA++ +P +L+LDE T+ LD ++
Sbjct: 123 LE---FAKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARH 175
Query: 1217 VVQDALERVMVNRTTVVV-------AHRLTTIKNADIIAVVKNG-VIAEQGSHD 1262
++ + L ++ T+++ A RL D + V++ G IAE H
Sbjct: 176 LMWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVIEEGRKIAEGAPHA 224
|
Length = 306 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 8e-11
Identities = 122/588 (20%), Positives = 220/588 (37%), Gaps = 66/588 (11%)
Query: 700 QKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRF 759
+K ++ + L + FP + SIA G+ G + I L +SI E+ L + S F
Sbjct: 1 KKAAIGEILALLRSPFPAITAFSIALGLAGGLAII---ALLASINNAIHEENFLGQGSLF 57
Query: 760 WALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSV 819
+ L ++ L+ + F AG +I +R EK++ I D + ++
Sbjct: 58 S---FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEID--RRGAHNL 112
Query: 820 GARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYT 879
L+ D I + + + + IA+ A + + +S +++
Sbjct: 113 IPLLTHDIDQINAFLFIFPPIAIALAIFFFC---IAYLAYLSVPMFAITISAIIIGTAAQ 169
Query: 880 QTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRR 939
FM GF EE DA +F E K G +
Sbjct: 170 LLAFMGGFKFFHAARDEE------DAFNEHTHAIAF-------GAKELKIHGIRRLSFAH 216
Query: 940 GILSGAGFGFSFLVLYCTNAFCFY--IGSVL--VEHGKATFGQ-VFKVFFALTISAL--- 991
G + + + L + F G +L + G A F +F A ISA
Sbjct: 217 GAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLA 276
Query: 992 ------GVSQTSAMAPDTTKAKDSAASI----FEILDSKPKIDSSKDEGMTLSS---VGG 1038
+ + P +A+ + + + +P+++ S + + L +
Sbjct: 277 LLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVD 336
Query: 1039 AIELRCVSFKYPTRPDVQIFR--NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS 1096
+IEL+ V + F + L I G V +VGE+G GKST+ L Y P
Sbjct: 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE 396
Query: 1097 GHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEAS 1156
G +LLD + R + + LF++ I + G+ A+ +
Sbjct: 397 GEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD--EGEH---------ASLD-- 443
Query: 1157 NAHNFISALPHGYETNVGERG----VQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
NA ++ L + + + G LS GQ++R+A+ A L++ ILL DE + D
Sbjct: 444 NAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDP 503
Query: 1213 ESERVVQDALERVMVNR--TTVVVAHRLTTIKNADIIAVVKNGVIAEQ 1258
+R + L + + T ++++H + AD I + G I +
Sbjct: 504 AFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 8e-11
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 6/60 (10%)
Query: 1179 QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN--RTTVVVAH 1236
QLSGG+K R+A+A+ +L+NP +LLLDE T+ LD ES +ALE + T ++V+H
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES----IEALEEALKEYPGTVILVSH 125
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 25/230 (10%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKST---VIALIERFYDPDSGHVLLDNIELPKFK 1110
D +I + + L++ G+ A++G +GSGKST IA Y+ SG +L +L +
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS-YEVTSGTILFKGQDL--LE 68
Query: 1111 LS---WLRQQMGLVSQEP-----VLFNETIRTNIAYGKQGGATEEEIIAATE-ASNAHNF 1161
L R + L Q P V E +R+ A + A EE + +
Sbjct: 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRS--ALNARRSARGEEPLDLLDFLKLLKAK 126
Query: 1162 ISALPHGYETNVGERGVQ--LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQ 1219
++ L G + R V SGG+K+R I + L PK+ +LDE S LD ++ ++V
Sbjct: 127 LALL--GMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVA 184
Query: 1220 DALERVMV-NRTTVVVAH--RLTTIKNADIIAVVKNGVIAEQGSHDALMK 1266
+ + R+ +R+ +++ H RL D + V+ +G I + G + L K
Sbjct: 185 EGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE-LAK 233
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-10
Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 48/195 (24%)
Query: 388 PEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISL---VERFYDPDAGEVLIDGIDIKKL 444
P+ +I SL G ++G +G+GKST++ + V++ ++ +A GI
Sbjct: 16 PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA--RPAPGI----- 68
Query: 445 QLKWIREKIGLVSQEPILFAT-SLRENI-------------------AYGKENA------ 478
K+G + QEP L T ++REN+ + + +A
Sbjct: 69 -------KVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALL 121
Query: 479 TDQ-EIRTAIELANAAKFIDKLPKGLDTMAGEHG----TQLSGGQKQRIAIARAILKNPK 533
+Q E++ I+ A+A KL +D + T+LSGG+++R+A+ R +L P
Sbjct: 122 AEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPD 181
Query: 534 ILLLDEATSALDAES 548
+LLLDE T+ LDAES
Sbjct: 182 MLLLDEPTNHLDAES 196
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 1e-10
Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 67/212 (31%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTV---IALIERFYDPDSGHVLL 1101
VS P P QI +++ LS G + ++G +G+GKST+ +A +++ ++ G
Sbjct: 12 VSKVVP--PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE---GEARP 66
Query: 1102 DNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNI-------------------AYG-- 1139
P K+ G + QEP L E T+R N+ AY
Sbjct: 67 A----PGIKV-------GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEP 115
Query: 1140 --------KQGGATEEEIIAATEASNAHNFISAL---------PHGYETNVGERGVQLSG 1182
+ G +E I +A++A + S L P + V +LSG
Sbjct: 116 DADFDALAAEQGELQEII----DAADAWDLDSQLEIAMDALRCPPW-DAKVT----KLSG 166
Query: 1183 GQKQRIAIARAVLKNPKILLLDEATSALDAES 1214
G+++R+A+ R +L+ P +LLLDE T+ LDAES
Sbjct: 167 GERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-10
Identities = 63/250 (25%), Positives = 105/250 (42%), Gaps = 48/250 (19%)
Query: 1040 IELRCVSFKYPTR-----PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP 1094
+ELR V+F Y P + L+I G+ + L+G +GSGKST+ L+ Y P
Sbjct: 323 LELRNVTFAYQDNGFSVGP-------INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP 375
Query: 1095 DSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAA-- 1152
SG +LLD + + R+ V + LF++ + G +G ++
Sbjct: 376 QSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL------GPEGKPANPALVEKWL 429
Query: 1153 ------TEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEA 1206
+ IS L +LS GQK+R+A+ A+ + ILLLDE
Sbjct: 430 ERLKMAHKLELEDGRISNL-------------KLSKGQKKRLALLLALAEERDILLLDEW 476
Query: 1207 TSALDAESERVV-QDALERVM-VNRTTVVVAHRLTTIKNADIIAVVKNGVIAE------- 1257
+ D R Q L + + +T ++H +AD + ++NG ++E
Sbjct: 477 AADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERD 536
Query: 1258 QGSHDALMKI 1267
S DA+ +
Sbjct: 537 AASRDAVART 546
|
Length = 547 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 1e-10
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 11/190 (5%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVI-SLVERFYDPD-AGEVLIDGIDIKKLQL 446
E I G + G A++G SGSGKST++ +L R + G +L + K L
Sbjct: 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL 139
Query: 447 KWIREKIGLVSQEPILFA-TSLRENIAYGKENATDQEIRTAIELANAAKFIDKL--PKGL 503
K + G V+Q+ IL+ ++RE + + + + ++ A I +L K
Sbjct: 140 K----RTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195
Query: 504 DTMAGEHGTQ-LSGGQKQRIAIARAILKNPKILLLDEATSALDAESE-RIVQDALVKIMT 561
+T+ G + +SGG+++R++IA +L NP +L+LDE TS LDA + R+V
Sbjct: 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK 255
Query: 562 SRTTVVVAHR 571
+T V H+
Sbjct: 256 GKTIVTSMHQ 265
|
Length = 659 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-10
Identities = 58/242 (23%), Positives = 109/242 (45%), Gaps = 33/242 (13%)
Query: 1040 IELRCVSFKYPT--RPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
I++R VS +Y + R V+ N+ L + G+ +VG SG+GK+T+ +I +P SG
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 1098 HVLL--------------DNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGG 1143
V + D K + L Q+ L VL N T + +
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA 399
Query: 1144 ATEEEII---AATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKI 1200
+ I + A + P +LS G++ R+A+A+ ++K P+I
Sbjct: 400 RMKAVITLKMVGFDEEKAEEILDKYPD-----------ELSEGERHRVALAQVLIKEPRI 448
Query: 1201 LLLDEATSALDAESERVVQDAL--ERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAE 1257
++LDE T +D ++ V ++ R + +T ++V+H + + + D A++++G I +
Sbjct: 449 VILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK 508
Query: 1258 QG 1259
G
Sbjct: 509 IG 510
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 30/222 (13%)
Query: 1061 LCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG- 1119
L + +G+ + LVG +G+GKST++A + P SG + L + + L +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 1120 LVSQEPVLFNETIRTNIA-YGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGV 1178
L Q+ F + + + TE A E + A L +V
Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG----RSVN---- 125
Query: 1179 QLSGGQKQRIAIARAVLK-----NP--KILLLDEATSALDAESERVVQD-ALERVMV--- 1227
QLSGG+ QR+ +A VL+ NP ++LLLDE ++LD V Q AL+R++
Sbjct: 126 QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-----VAQQAALDRLLSELC 180
Query: 1228 --NRTTVVVAHRLT-TIKNADIIAVVKNGVIAEQGSHDALMK 1266
V+ +H L T+++AD + ++K G + G D ++
Sbjct: 181 QQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222
|
Length = 248 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-10
Identities = 54/218 (24%), Positives = 110/218 (50%), Gaps = 29/218 (13%)
Query: 1053 PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF--K 1110
V +++ L++ G+ AL+GE+G+GKST++ ++ ++P G + ++NI K K
Sbjct: 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK 75
Query: 1111 LSWLRQQMGLVSQEPVLFNE-TIRTNIAYGKQGGA----------TEEEIIAATEASNAH 1159
L+ + +G++ QE + +E T+ N+ G+ E + AA
Sbjct: 76 LAA-QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAA------- 127
Query: 1160 NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL-DAESERV- 1217
+ L G + ++ E+ LS KQ + IA+ ++ + K++++DE TS+L + E + +
Sbjct: 128 --MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF 185
Query: 1218 -VQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNG 1253
+ + L + V ++H+L I+ D V+K+G
Sbjct: 186 LIMNQLRK--EGTAIVYISHKLAEIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 64/233 (27%), Positives = 108/233 (46%), Gaps = 30/233 (12%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLV--ERFYDPDAGEVLIDGIDIKKLQLK- 447
I G +L V G A++G +GSGKST+ + + Y+ G V G D+ +L +
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74
Query: 448 WIREKIGLVSQEPI---------LFATSLRENIAYGKENATDQ-----EIRTAIELANAA 493
E I + Q P+ T+L +Y + D+ + I L
Sbjct: 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL--- 131
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
K+P+ L T + G SGG+K+R I + + P++ +LDE+ S LD ++ +IV
Sbjct: 132 ----KMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVA 185
Query: 554 DALVKIMT-SRTTVVVAH--RLTTIRNADLIAVVHQGKIVEKGTHDELIKDPE 603
D + + R+ ++V H R+ D + V++QG+IV+ G L+K E
Sbjct: 186 DGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF-TLVKQLE 237
|
Length = 248 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 2e-10
Identities = 33/188 (17%), Positives = 60/188 (31%), Gaps = 59/188 (31%)
Query: 1067 SGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPV 1126
G+ + +VG GSGK+T+ + R P G V+ + E ++ + + ++
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 1127 LFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQ 1186
G +
Sbjct: 61 GS-----------------------------------------------------GELRL 67
Query: 1187 RIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV------NRTTVVVAHRLTT 1240
R+A+A A P +L+LDE TS LDAE E ++ E ++ TV++
Sbjct: 68 RLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK 127
Query: 1241 IKNADIIA 1248
++
Sbjct: 128 DLGPALLR 135
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-10
Identities = 48/207 (23%), Positives = 98/207 (47%), Gaps = 19/207 (9%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
A+E+ V+ + D + N+ +P G+ L+G +G+GK+T +I +P G
Sbjct: 2 ALEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGE 58
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAY-GKQGGATEEEIIAATEAS 1156
+ + L + ++ ++G + +E L+ T+ + Y + G + EI
Sbjct: 59 ITWNGGPLSQE----IKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEI-----QK 109
Query: 1157 NAHNFISALP-HGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE 1215
++ L G +T + +LS G +Q+I AV+ P++L+LDE S LD +
Sbjct: 110 KLQAWLERLEIVGKKTKKIK---ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNV 166
Query: 1216 RVVQDALERVMVNRTTVVVA-HRLTTI 1241
+++DA+ + T++ + HR+ +
Sbjct: 167 ELLKDAIFELKEEGATIIFSSHRMEHV 193
|
Length = 300 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 53/230 (23%), Positives = 101/230 (43%), Gaps = 40/230 (17%)
Query: 1046 SFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIE 1105
S +V+ + + +I G+ V +G +G+GK+T + ++ P SG V +
Sbjct: 25 SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV-AGL 83
Query: 1106 LPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISAL 1165
+P W +++ + + V+F + +T + + + ++ I L
Sbjct: 84 VP-----W-KRRKKFLRRIGVVFGQ--KTQLWWD----------LPVIDSFYLLAAIYDL 125
Query: 1166 PHG-YETNVGE---------------RGVQLSGGQKQRIAIARAVLKNPKILLLDEATSA 1209
P ++ + E R QLS GQ+ R IA A+L P+IL LDE T
Sbjct: 126 PPARFKKRLDELSELLDLEELLDTPVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183
Query: 1210 LDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQG 1259
LD ++ +++ L+ R T V+ LT+ DI A+ + ++ ++G
Sbjct: 184 LDVVAQENIRNFLKEYNRERGTTVL---LTSHYMKDIEALARRVLVIDKG 230
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 61/238 (25%), Positives = 106/238 (44%), Gaps = 36/238 (15%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERF--YDPDAGEVLIDGIDIKKLQL 446
E +I G +L + G A++G +GSGKST+ ++ Y G++L G I L+
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 447 KWIREKIGL------------VSQEPILFATSLRENIAYGKENATDQE----IRTAIELA 490
+ R +G+ VS L + G E I ++L
Sbjct: 79 E-ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLV 137
Query: 491 N-AAKFIDK-LPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
F+ + + +G SGG+K+R I + L + ++ +LDE S LD ++
Sbjct: 138 GMDPSFLSRNVNEGF-----------SGGEKKRNEILQMALLDSELAILDETDSGLDIDA 186
Query: 549 ERIVQDALVKIMTSRTTVV-VAH--RLTTIRNADLIAVVHQGKIVEKGTHDELIKDPE 603
+I+ + + K+MTS +++ + H RL D + V+ GKI++ G EL K+ E
Sbjct: 187 LKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD-AELAKELE 243
|
Length = 252 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 22/210 (10%)
Query: 1058 FRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLL----DNIELPKFKLSW 1113
R+ ++P G ALVG +GSGKST+ + F SG + + L K +++
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82
Query: 1114 LRQQMGLVSQEPVLFNETIRTNIAYGKQG-----GATEEEIIAATEASNAHNFISALPHG 1168
+ Q + PVL + + YG G + +I+ A A + +
Sbjct: 83 VPQSEEVDWSFPVLVEDVVMMG-RYGHMGWLRRAKKRDRQIVTAALAR-----VDMVEFR 136
Query: 1169 YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE-RVVQDALERVMV 1227
+ +GE LSGGQK+R+ +ARA+ + +++LLDE + +D ++E R++ E
Sbjct: 137 HR-QIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE 191
Query: 1228 NRTTVVVAHRLTTIKN-ADIIAVVKNGVIA 1256
+T +V H L ++ D +VK V+A
Sbjct: 192 GKTMLVSTHNLGSVTEFCDYTVMVKGTVLA 221
|
Length = 272 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 7e-10
Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 32/220 (14%)
Query: 1061 LCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWL-RQQMG 1119
L + +G+ + LVG +G+GKST++A + SG + L + + L R +
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 1120 LVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGV- 1178
L Q+ F + + + E + + + A L R
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELL---NDVAGALALDDKLG---------RSTN 124
Query: 1179 QLSGGQKQRIAIARAVLK-----NP--KILLLDEATSALDAESERVVQDALERVMVN--- 1228
QLSGG+ QR+ +A VL+ NP ++LLLDE ++LD Q AL+R++
Sbjct: 125 QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQ----QSALDRLLSALCQ 180
Query: 1229 --RTTVVVAHRLT-TIKNADIIAVVKNGVIAEQGSHDALM 1265
V+ +H L T+++A ++K G + G + ++
Sbjct: 181 QGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 7e-10
Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 17/211 (8%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS--GHVLLDNIELPKFKL 1111
V+ + L + G+ V L GE+G+GKST++ ++ Y + G + L +
Sbjct: 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNI 72
Query: 1112 SWL-RQQMGLVSQEPVLFNE-TIRTNIAYGKQ----GGATE-EEIIAATEASNAHNFISA 1164
R + ++ QE L E ++ NI G + GG + + + A
Sbjct: 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDA 132
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224
VG+ G GGQ+Q + IA+A+ K ++L+LDE +S+L + ++ D +
Sbjct: 133 DNV--TRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
Query: 1225 VMV-NRTTVVVAHRLTTIKN-ADIIAVVKNG 1253
+ V ++H+L +K D I V+++G
Sbjct: 187 LKAHGVACVYISHKLNEVKAVCDTICVIRDG 217
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 8e-10
Identities = 64/230 (27%), Positives = 110/230 (47%), Gaps = 29/230 (12%)
Query: 1053 PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK-- 1110
P V+ ++ +G+ AL+GE+G+GKST++ ++ Y PD+G +L+D E+ +F
Sbjct: 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEM-RFAST 73
Query: 1111 LSWLRQQMGLVSQEPVLFNE-TIRTNIAYG----KQGGATEEEIIAATEASNAHNFISAL 1165
+ L + ++ QE L E T+ N+ G K G + H +
Sbjct: 74 TAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID 133
Query: 1166 PHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA-ESERVVQDALER 1224
P +T + LS GQ+Q + IA+A+ +N +++ DE TS+L A E E+ L R
Sbjct: 134 P---DTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQ-----LFR 181
Query: 1225 VMV-----NRTTVVVAHRLTTI-KNADIIAVVKNGVIAEQGSHDALMKIT 1268
V+ R + V+HR+ I D I V K+G + D + ++
Sbjct: 182 VIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA--TFDDMAQVD 229
|
Length = 501 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 8e-10
Identities = 55/188 (29%), Positives = 78/188 (41%), Gaps = 48/188 (25%)
Query: 1046 SFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIE 1105
SF YP P +F+NL I +A+VG +G GKST++ LI P SG V
Sbjct: 515 SFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRS--- 569
Query: 1106 LPKFKLSWLRQQM--GL-VSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFI 1162
K +++ Q GL +S P+L+ F
Sbjct: 570 -AKVRMAVFSQHHVDGLDLSSNPLLYM----------------------------MRCFP 600
Query: 1163 SALPHGYETNVGERGVQ----------LSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
++G GV LSGGQK R+A A+ K P ILLLDE ++ LD
Sbjct: 601 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDL 660
Query: 1213 ES-ERVVQ 1219
++ E ++Q
Sbjct: 661 DAVEALIQ 668
|
Length = 718 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 41/158 (25%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKL-SWL 1114
++ ++ L++ SG+ V L+G +G+GK+T ++ D+G++++D+ ++ L +
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76
Query: 1115 RQQMGLVSQEPVLFNE-TIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNV 1173
R+ +G + QE +F ++ N+ Q +++ A A+ + + +
Sbjct: 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQ---IRDDLSAEQREDRANELMEEFHIEHLRD- 132
Query: 1174 GERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
G LSGG+++R+ IARA+ NPK +LLDE + +D
Sbjct: 133 -SMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 41/220 (18%)
Query: 382 FRYPARPEVQIFAGFSLHVPSGT-----TAALVGQSGSGKSTVISLVERFYDPDAGEVLI 436
+ YP + F+L V G+ ++G +G GK+T I ++ PD G++ I
Sbjct: 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI 58
Query: 437 DGIDIK-KLQLKWIREKIGLVSQEPILFATSLRENIAYGKEN--ATDQEIRTAIELANAA 493
+ + K Q +I+ + ++R+ + T +T E+A
Sbjct: 59 ELDTVSYKPQ--YIKAD----------YEGTVRD-LLSSITKDFYTHPYFKT--EIAK-- 101
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
P ++ + +LSGG+ QR+AIA + K+ I LLDE ++ LD E +
Sbjct: 102 ------PLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS 155
Query: 554 DALVKIM--TSRTTVVVAHRLTTIRNADLIA---VVHQGK 588
+ + +T VV H I D +A +V +G+
Sbjct: 156 KVIRRFAENNEKTAFVVEH---DIIMIDYLADRLIVFEGE 192
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 25/220 (11%)
Query: 1053 PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLS 1112
P V+ L++ G+ +ALVGE+G+GKST++ ++ Y D+G +L E+ F
Sbjct: 15 PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEV-TFNGP 73
Query: 1113 WLRQQMGL--VSQEPVLFNE-TIRTNIAYGKQ-----GGATEEEIIAATEASNAHNFISA 1164
Q+ G+ + QE L + TI NI G++ G +++ A + A
Sbjct: 74 KSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLAR---LN 130
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL-DAESE---RVVQD 1220
L + VGE LS G++Q + IA+ + K++++DE T AL D E+E RV+++
Sbjct: 131 LRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRE 186
Query: 1221 ALERVMVNRTTVVVAHRLTTI-KNADIIAVVKNG-VIAEQ 1258
+ R V ++HRL I + D + V ++G IAE+
Sbjct: 187 LKSQ---GRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223
|
Length = 501 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 25/175 (14%)
Query: 1064 SIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQ 1123
I G+ + ++G +G GK+T + L+ PD G K+S+ Q +
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE-------EDLKVSYKPQYISPDYD 415
Query: 1124 EPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGG 1183
V + +R+ I + EI+ L E V E LSGG
Sbjct: 416 GTV--EDLLRSAIRSAFGSSYFKTEIVKPLN----------LEDLLERPVDE----LSGG 459
Query: 1184 QKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR--TTVVVAH 1236
+ QR+AIA A+ + + LLDE ++ LD E +V + R + N T +VV H
Sbjct: 460 ELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDH 514
|
Length = 591 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 64/239 (26%), Positives = 100/239 (41%), Gaps = 63/239 (26%)
Query: 1058 FRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV--------LLDNIELPKF 1109
R++ + G+ + +VGESGSGK+T++ + PD+G V L D L +
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 1110 KLSWL-RQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAA---------TEASN-- 1157
+ L R + G V Q P + +R ++ GG E ++A A +
Sbjct: 82 ERRRLLRTEWGFVHQHPR---DGLRMQVS---AGGNIGERLMAVGARHYGDIRATAGDWL 135
Query: 1158 -----AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
I LP + SGG +QR+ IAR ++ +P+++ +DE T LD
Sbjct: 136 ERVEIDAARIDDLPTTF-----------SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDV 184
Query: 1213 ESERVVQ----DALERVMVNR---TTVVVAH-----RLTTIKNADIIAVVKNGVIAEQG 1259
VQ D L R +V V+V H RL A + V+K G + E G
Sbjct: 185 S----VQARLLDLL-RGLVRELGLAVVIVTHDLAVARLL----AHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 38/228 (16%)
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIE----LPKFKLSWL 1114
+L S+ G+ L+G +G+GK+T++ +I P G VL D LP+ +++
Sbjct: 22 NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIA-- 79
Query: 1115 RQQMGLVSQEPVLF-NETIRTN--IAYGKQGG----------ATE----EEIIAATEASN 1157
R +G Q+P +F N T+R N +A + A E +E++A +
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD 139
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
+ ++AL LS GQKQ + I + ++PK+LLLDE + +
Sbjct: 140 ERDRLAAL--------------LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEK 185
Query: 1218 VQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264
+ L+ + + +VV H + ++ AD + V+ G + +GS D +
Sbjct: 186 TAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233
|
Length = 249 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 2e-09
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 61/247 (24%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTV---IALIERFYDPD 1095
++L+ V Y Q+ + + L + G+ + LVG SG GKST+ +A +ER
Sbjct: 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI---T 57
Query: 1096 SGHVLLD-----NIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYG-KQGGATEEE 1148
SG + + +E P + + +V Q L+ + ++R N+AYG K G + E
Sbjct: 58 SGEIWIGGRVVNELE-PA------DRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAE 110
Query: 1149 IIAATEASNAHNFISALPHGYETNVGE-------------RGVQLSGGQKQRIAIARAVL 1195
I E V E + +LSGGQ+QR+A+ RA++
Sbjct: 111 I--------------------EERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIV 150
Query: 1196 KNPKILLLDEATSALDAE---SERVVQDALERVMVNRTTVVVAH-RLTTIKNADIIAVVK 1251
+ P + L DE S LDA+ R+ L R + T++ V H ++ + AD + V+
Sbjct: 151 REPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRL-KTTSLYVTHDQVEAMTLADRVVVMN 209
Query: 1252 NGVIAEQ 1258
GV EQ
Sbjct: 210 GGVA-EQ 215
|
Length = 356 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 2e-09
Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 21/205 (10%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI 1104
+ F Y +P + + + +P+G + L G +G+GK+T++ LI +P+ G +L +
Sbjct: 7 LDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQ 63
Query: 1105 ELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISA 1164
+ K ++ +Q + + + T+R N Y I TE + +
Sbjct: 64 SIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGI---TELCR----LFS 116
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224
L H + G LS GQK+++A+ R + K+ LLDE ALD E + + +
Sbjct: 117 LEHLIDYPCG----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD---ELSLLTIITK 169
Query: 1225 VMVNR----TTVVVAHRLTTIKNAD 1245
+ +R ++ +H+ + AD
Sbjct: 170 IQEHRAKGGAVLLTSHQDLPLNKAD 194
|
Length = 200 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-09
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 31/193 (16%)
Query: 1061 LCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGL 1120
L +PSG + + G +G GKS++ ++ + P G L P + ++
Sbjct: 471 LSFEVPSGNNLLICGPNGCGKSSLFRILGELW-PVYGGRL----TKPA------KGKLFY 519
Query: 1121 VSQEPVLFNETIRTNIAYG------KQGGATEEEIIAATEASNAHNFISALPHGYETNVG 1174
V Q P + T+R I Y K+ G +++++ + N L H E G
Sbjct: 520 VPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILD--NVQ-----LTHILEREGG 572
Query: 1175 ERGVQ-----LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR 1229
VQ LSGG+KQRIA+AR P+ +LDE TSA+ + E +
Sbjct: 573 WSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGI 630
Query: 1230 TTVVVAHRLTTIK 1242
T V+HR + K
Sbjct: 631 TLFSVSHRKSLWK 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-09
Identities = 54/178 (30%), Positives = 94/178 (52%), Gaps = 14/178 (7%)
Query: 1068 GKTVALVGESGSGKSTVI-ALIERFYDPD-SGHVLLDNIELPKFKLSWLRQQMGLVSQEP 1125
G+ +A++G SGSGKST++ AL R + +G +L +N + K L ++ G V+Q+
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL----KRTGFVTQDD 149
Query: 1126 VLFNE-TIRTNIAYGK----QGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQL 1180
+L+ T+R + + T++E I E+ + ++ + N RG+
Sbjct: 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGI-- 207
Query: 1181 SGGQKQRIAIARAVLKNPKILLLDEATSALDAESE-RVVQDALERVMVNRTTVVVAHR 1237
SGG+++R++IA +L NP +L+LDE TS LDA + R+V +T V H+
Sbjct: 208 SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQ 265
|
Length = 659 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 4e-09
Identities = 64/229 (27%), Positives = 101/229 (44%), Gaps = 32/229 (13%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFS-----LHVPSGTTAALVGQSGSGKSTVISLVERFYD 428
+ELR+V F Y GFS L + G L+G +GSGKST+ L+ Y
Sbjct: 322 TLELRNVTFAYQDN-------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374
Query: 429 PDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIE 488
P +GE+L+DG + Q + R+ V + LF L G E
Sbjct: 375 PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL------GPEG-------KPAN 421
Query: 489 LANAAKFIDKLPKGLDTMAGEHG----TQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
A K++++L K + E G +LS GQK+R+A+ A+ + ILLLDE +
Sbjct: 422 PALVEKWLERL-KMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQ 480
Query: 545 DAESERIVQDALVKIM--TSRTTVVVAHRLTTIRNADLIAVVHQGKIVE 591
D R L+ ++ +T ++H +AD + + G++ E
Sbjct: 481 DPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 57/199 (28%), Positives = 96/199 (48%), Gaps = 40/199 (20%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLV 456
S VP G+ AALVG +GSGKST+ + F +G++ I G ++ L+ + + V
Sbjct: 27 SFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ-ALQ--KNLVAYV 83
Query: 457 SQE-------PILFATSLRENIA----YG------KENATDQEIRTAIELANAAKFIDKL 499
Q P+L E++ YG + D++I TA LA
Sbjct: 84 PQSEEVDWSFPVLV-----EDVVMMGRYGHMGWLRRAKKRDRQIVTA-ALAR-------- 129
Query: 500 PKGLDTMAGEHGT--QLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALV 557
+D + H +LSGGQK+R+ +ARAI + +++LLDE + +D ++E + L
Sbjct: 130 ---VDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLR 186
Query: 558 KIMTS-RTTVVVAHRLTTI 575
++ +T +V H L ++
Sbjct: 187 ELRDEGKTMLVSTHNLGSV 205
|
Length = 272 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 6e-09
Identities = 42/184 (22%), Positives = 84/184 (45%), Gaps = 36/184 (19%)
Query: 1068 GKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG-------- 1119
G+ V +G +G+GKST + +I + PDSG V + ++ + +++ +G
Sbjct: 28 GRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQRNIGYLPEHNPL 86
Query: 1120 ---LVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATE----ASNAHNFISALPHGYETN 1172
+ +E + F I YG +G ++ + E H I L GY
Sbjct: 87 YLDMYVREYLQFIAGI-----YGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGY--- 138
Query: 1173 VGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTV 1232
+QR+ +A+A++ +PK+L+LDE T+ LD +++ ++ + ++T +
Sbjct: 139 ------------RQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTII 186
Query: 1233 VVAH 1236
+ H
Sbjct: 187 LSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 6e-09
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 54/178 (30%)
Query: 408 LVGQSGSGKSTVISL---VERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFA 464
++G +G+GKST++ + V++ ++ +A GI K+G + QEP L
Sbjct: 38 VLGLNGAGKSTLLRIMAGVDKEFEGEA--RPAPGI------------KVGYLPQEPQLDP 83
Query: 465 T-SLRENI-------------------AYG----------KENATDQEIRTAIELANAAK 494
++REN+ AY E QEI I+ A+A
Sbjct: 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEI---IDAADAWD 140
Query: 495 FIDKLPKGLDTM---AGEHG-TQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
+L +D + + T+LSGG+++R+A+ R +L+ P +LLLDE T+ LDAES
Sbjct: 141 LDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 6e-09
Identities = 71/238 (29%), Positives = 112/238 (47%), Gaps = 44/238 (18%)
Query: 388 PEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLK 447
P V+ +G +L+V G ALVG++G+GKST++ ++ Y DAG +L G K++
Sbjct: 15 PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG---KEVTFN 71
Query: 448 WIREK----IGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKF---IDKL 499
+ IG++ QE L ++ ENI G+ E + K DKL
Sbjct: 72 GPKSSQEAGIGIIHQELNLIPQLTIAENIFLGR------EFVNRFGRIDWKKMYAEADKL 125
Query: 500 PKGL------DTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL-DAESERIV 552
L D + GE LS G++Q + IA+ + K++++DE T AL D E+E
Sbjct: 126 LARLNLRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETE--- 178
Query: 553 QDALVKIMTS-----RTTVVVAHRLTTIRN-ADLIAVVHQGK-IVEKG----THDELI 599
+L +++ R V ++HRL I D + V G+ I E+ T D LI
Sbjct: 179 --SLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDSLI 234
|
Length = 501 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 7e-09
Identities = 51/232 (21%), Positives = 105/232 (45%), Gaps = 36/232 (15%)
Query: 1058 FRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK------- 1110
R++ ++ +G+ + + G G+G++ + + SG +LLD +
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 1111 ----LSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISAL- 1165
+ R+ GLV + N T+ + + ++G I E + A +I L
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGL-----IDRRKERALAERYIRRLR 389
Query: 1166 --PHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD--AESE--RVVQ 1219
E +G LSGG +Q++ +AR + +PK+L+LDE T +D A++E R+++
Sbjct: 390 IKTPSPEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIR 445
Query: 1220 DALERVMVNRTTVVVAHRLTTI-KNADIIAVVKNGVIA-----EQGSHDALM 1265
+ + ++++ L + +D I V++ G I E+ + +A+M
Sbjct: 446 ELAAE---GKAILMISSELPELLGLSDRILVMREGRIVGELDREEATEEAIM 494
|
Length = 500 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 7e-09
Identities = 47/204 (23%), Positives = 80/204 (39%), Gaps = 40/204 (19%)
Query: 1042 LRCVSF-KYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKST---VIALIERFYDPDSG 1097
R +SF R + I ++ + G+ V ++G GSG ST +A G
Sbjct: 6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG 65
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASN 1157
+ + I +F + + + VS+E V F T E +
Sbjct: 66 DIHYNGIPYKEFAEKYPGEII-YVSEEDVHFPTL-------------TVRETLDFALRCK 111
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
+ F+ RG+ SGG+++R++IA A++ +L D +T LD+ +
Sbjct: 112 GNEFV-------------RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST--- 153
Query: 1218 VQDALERVMVNRTTVVVAHRLTTI 1241
ALE + RT V + TT
Sbjct: 154 ---ALEILKCIRTMADVL-KTTTF 173
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 8e-09
Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 22/223 (9%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERF--YDPDSGHVLLDNIELPKFKL 1111
+ +I + L LSI G+ A++G +GSGKST+ +I Y G +L + +
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 1112 SWLRQQMG--LVSQEPVLFNETIRTN-----IAYG---KQGGATEEEIIAATEASNAH-N 1160
R +G L Q P+ +N +AY K G E + + E N
Sbjct: 79 E-ERAHLGIFLAFQYPIEIPGV--SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLK 135
Query: 1161 FISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQD 1220
+ P NV E SGG+K+R I + L + ++ +LDE S LD ++ +++ +
Sbjct: 136 LVGMDPSFLSRNVNE---GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAE 192
Query: 1221 ALERVM-VNRTTVVVAH--RLTTIKNADIIAVVKNGVIAEQGS 1260
+ ++M + +++ H RL D + V++NG I + G
Sbjct: 193 GINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235
|
Length = 252 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 29/221 (13%)
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118
+L L + G+ ++G +G+GK+T++ +I PD G VL +L +
Sbjct: 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLP-EHQIARA 77
Query: 1119 GLVS--QEPVLF-NETIRTN--IAYGKQGG----------ATEEEIIAATEASNAHNFIS 1163
G+ Q+P +F N T+ N +A + A E++ I I
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLE-----TI- 131
Query: 1164 ALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL-DAESERVVQDAL 1222
G LS GQKQ + I ++++PK+LLLDE + + D E+E+ + L
Sbjct: 132 ----GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA-ELL 186
Query: 1223 ERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHD 1262
+ + + VVV H + +++ AD + V+ G + +GS D
Sbjct: 187 KSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLD 227
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-08
Identities = 56/222 (25%), Positives = 104/222 (46%), Gaps = 39/222 (17%)
Query: 1053 PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD---SGHVLLDNIELPKF 1109
V+ N+ L + +G+ V+L GE+G+GKST++ ++ Y P G ++ + EL +
Sbjct: 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEEL-QA 73
Query: 1110 K---------LSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ---GGATEEEIIAATEASN 1157
++ + Q++ LV + VL NI G + GG +
Sbjct: 74 SNIRDTERAGIAIIHQELALVKELSVL------ENIFLGNEITPGGIMDY----DAMYLR 123
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE-- 1215
A ++ L + N L GQ+Q + IA+A+ K ++L+LDE T++L ESE
Sbjct: 124 AQKLLAQL--KLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL-TESETA 180
Query: 1216 ---RVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNG 1253
+++D + ++H+L +K +D I V+++G
Sbjct: 181 VLLDIIRDLKAH---GIACIYISHKLNEVKAISDTICVIRDG 219
|
Length = 506 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 61/243 (25%), Positives = 98/243 (40%), Gaps = 67/243 (27%)
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTVI------ALIERFY----DPDSGHVLLDNIELPK 1108
+N+ + IP G + G SGSGKS++I AL R + P + H ++ +E
Sbjct: 12 KNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGN-HDRIEGLE--- 67
Query: 1109 FKLSWLRQQMGLVSQEPVLFNETIRTNIA-YGK-------------QG------------ 1142
+ + + Q P+ T R+N A Y +G
Sbjct: 68 -HIDKVIV----IDQSPI--GRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRY 120
Query: 1143 -GATEEEIIAATEASNAHNFISALPH-------------GYETNVGERGVQLSGGQKQRI 1188
G + +++ T A F +P GY +G+ LSGG+ QRI
Sbjct: 121 KGKSIADVLDMT-VEEALEFFENIPKIARKLQTLCDVGLGYIK-LGQPATTLSGGEAQRI 178
Query: 1189 AIARAVLK---NPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVA-HRLTTIKNA 1244
+A+ + K + +LDE T+ L + + + L+R++ TVVV H L IK A
Sbjct: 179 KLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238
Query: 1245 DII 1247
D I
Sbjct: 239 DWI 241
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 66/242 (27%), Positives = 98/242 (40%), Gaps = 46/242 (19%)
Query: 386 ARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVI-SLVERFYDPDA-------GEVLID 437
AR I SL + G AL+G++G+GKST++ +L A G+V ++
Sbjct: 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLN 69
Query: 438 G---IDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYG------KENATDQEIR---- 484
G I +L +R + +Q FA S RE + G + A
Sbjct: 70 GEPLAAIDAPRLARLRAVLPQAAQPA--FAFSAREIVLLGRYPHARRAGALTHRDGEIAW 127
Query: 485 TAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILK---------NPKIL 535
A+ LA A + G T LSGG+ R+ AR + + P+ L
Sbjct: 128 QALALAGA-----------TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYL 176
Query: 536 LLDEATSALD-AESERIVQD--ALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEK 592
LLDE T+ALD A R++ L + +V R+AD IA++ G IV
Sbjct: 177 LLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236
Query: 593 GT 594
G
Sbjct: 237 GA 238
|
Length = 272 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 3e-08
Identities = 53/215 (24%), Positives = 107/215 (49%), Gaps = 11/215 (5%)
Query: 1055 VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLS-W 1113
+Q + L I G+ V L+G +G+GK+T++ + SG ++ D ++ ++ +
Sbjct: 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI 77
Query: 1114 LRQQMGLVSQEPVLFNE-TIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETN 1172
+R+ + +V + +F+ T+ N+A GG E + P +E
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLA---MGGFFAERDQFQERIKWVYEL---FPRLHERR 131
Query: 1173 VGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTV 1232
+ +R +SGG++Q +AI RA++ P++LLLDE + L + + D +E++ T+
Sbjct: 132 I-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTI 190
Query: 1233 VVAHRLT--TIKNADIIAVVKNGVIAEQGSHDALM 1265
+ + +K AD V++NG + + + DAL+
Sbjct: 191 FLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225
|
Length = 237 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 20/204 (9%)
Query: 1063 LSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVS 1122
LS G+ + L+G +G+GK+T++ I P G V + K + +G V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 1123 QEPVL---FNETIRTNIAYGKQGGATEEEIIAATEASNAHNFIS---ALPHGYETNVGER 1176
Q F ++ + G+ G I +F + AL T + +R
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTG------HIGWLRRPCVADFAAVRDALRRVGLTELADR 109
Query: 1177 GV-QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVV-V 1234
V +LSGGQ+QR+ +ARA+ P +LLLDE + LD ++ ++ + + T ++
Sbjct: 110 PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169
Query: 1235 AHRLT-TIKNADIIAVVKNGVIAE 1257
H L + D + ++ VIA+
Sbjct: 170 THDLAQAMATCDRVVLLNGRVIAD 193
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 4e-08
Identities = 61/263 (23%), Positives = 108/263 (41%), Gaps = 54/263 (20%)
Query: 346 YKMFET---IKRKPK--IDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHV 400
K F + IK P D ++ G+ IE + LR++ +L +
Sbjct: 364 TKTFASELDIKGLPNEFQDILESFGVRQRVIERYV-LRNL----------------NLEI 406
Query: 401 PSGTTAALVGQSGSGKSTVISLVERF--------YDPDAGEVLIDGIDIKKLQLKWIREK 452
G A+VGQSG+GK+T++ ++ Y PD+G+V + + L +
Sbjct: 407 KPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPE 466
Query: 453 IGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGT 512
G V+ L + + N A EI L++A + K +
Sbjct: 467 FGEVTILEHLRSKTGDLNAA--------VEILNRAGLSDAVLYRRKF------------S 506
Query: 513 QLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRT-TVVVAHR 571
+LS GQK+R +A+ + + P +LL+DE + LD + V + ++ T++V
Sbjct: 507 ELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTH 566
Query: 572 LTTIRNA---DLIAVVHQGKIVE 591
+ NA D + +V GK+
Sbjct: 567 RPEVGNALRPDTLILVGYGKVPV 589
|
Length = 593 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 4e-08
Identities = 36/188 (19%), Positives = 57/188 (30%), Gaps = 59/188 (31%)
Query: 402 SGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPI 461
G +VG GSGK+T+ + R P G V+ + ++ I +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIV------ 54
Query: 462 LFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQR 521
G SG + R
Sbjct: 55 ----------------------------------------------GGKKASGSGELRLR 68
Query: 522 IAIARAILKNPKILLLDEATSALDAESERIVQDALV-------KIMTSRTTVVVAHRLTT 574
+A+A A P +L+LDE TS LDAE E ++ K + T ++ +
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Query: 575 IRNADLIA 582
+ A L
Sbjct: 129 LGPALLRR 136
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 4e-08
Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 20/176 (11%)
Query: 410 GQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ---LKWIREKIGLVSQEPILFATS 466
G +G GKS+++ ++ P +G + +I + +I +GL + +
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVF---- 88
Query: 467 LRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526
EN+ + EI + E AA KL LD E LS G ++ +AIAR
Sbjct: 89 --ENLKFW------SEIYNSAETLYAAIHYFKLHDLLD----EKCYSLSSGMQKIVAIAR 136
Query: 527 AILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVA-HRLTTIRNADLI 581
I + LLDE + L E+ ++ + +V S V+++ H ++I++A ++
Sbjct: 137 LIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192
|
Length = 195 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 5e-08
Identities = 46/198 (23%), Positives = 92/198 (46%), Gaps = 26/198 (13%)
Query: 1056 QIFRNLCLS-IPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIE---LPKFKL 1111
+F +L ++ +PS T + G +G GKS+++ +I P SG++ N + K
Sbjct: 15 NLF-DLSITFLPSAITY-IKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYC 72
Query: 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYET 1171
+++ +GL + T+ N+ + + + E + AA H+ +
Sbjct: 73 TYIGHNLGLKLEM------TVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-------- 118
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTT 1231
E+ LS G ++ +AIAR + + LLDE + L E+ ++ + L + N
Sbjct: 119 ---EKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNN-LIVMKANSGG 174
Query: 1232 VVV--AHRLTTIKNADII 1247
+V+ +H ++IK+A I+
Sbjct: 175 IVLLSSHLESSIKSAQIL 192
|
Length = 195 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 5e-08
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 21/168 (12%)
Query: 1053 PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK-- 1110
P V+ N+ L + AL+GE+G+GKST++ + Y DSG +L E+ FK
Sbjct: 9 PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI-DFKSS 67
Query: 1111 -------LSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGG-ATEEEIIAATEASNAHNFI 1162
+S + Q++ LV Q V+ N + Y +G ++++ T+A I
Sbjct: 68 KEALENGISMVHQELNLVLQRSVMDNMWLGR---YPTKGMFVDQDKMYRDTKAIFDELDI 124
Query: 1163 SALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL 1210
P + LS Q Q I IA+A N KI+++DE TS+L
Sbjct: 125 DIDPR-------AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL 165
|
Length = 491 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 6e-08
Identities = 35/206 (16%), Positives = 81/206 (39%), Gaps = 51/206 (24%)
Query: 1058 FRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLS-WLRQ 1116
R++ + +G+ V + G G+G++ + + P SG + LD + + +R
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 1117 QMGLVSQEP----VLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETN 1172
+ V ++ ++ + ++ NIA
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENIALS--------------------------------- 102
Query: 1173 VGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTV 1232
LSGG +Q++ +AR + ++P++L+LDE T +D ++ + + + V
Sbjct: 103 -----SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAV 157
Query: 1233 VVAHRLTT-----IKNADIIAVVKNG 1253
++ +++ + D I V+ G
Sbjct: 158 LL---ISSELDELLGLCDRILVMYEG 180
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 8e-08
Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 47/212 (22%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV-LIDGIDI---KKLQLK 447
I L++ G+ L+G++G+GKST+I L+ P +GE+ L GI + + QL+
Sbjct: 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLE 386
Query: 448 WIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMA 507
++R + P+ +++A +Q++R D +
Sbjct: 387 FLR-----ADESPL-------QHLARLAPQELEQKLR-------------------DYLG 415
Query: 508 G---------EHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVK 558
G E + SGG+K R+ +A + + P +LLLDE T+ LD + + + +AL+
Sbjct: 416 GFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALID 475
Query: 559 IMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKI 589
VVV+H +R+ D + +VH GK+
Sbjct: 476 F--EGALVVVSHDRHLLRSTTDDLYLVHDGKV 505
|
Length = 638 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 29/178 (16%)
Query: 1064 SIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQ 1123
SI + + ++G +G GK+T I ++ PD G +IE+ +S+ Q +
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG-----DIEIELDTVSYKPQYI----- 70
Query: 1124 EPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFIS---ALPHGYETNVGERGVQL 1180
+ G + + + T+ H + A P E + +L
Sbjct: 71 KA--------------DYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPEL 116
Query: 1181 SGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN--RTTVVVAH 1236
SGG+ QR+AIA + K+ I LLDE ++ LD E + + R N +T VV H
Sbjct: 117 SGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 48/201 (23%), Positives = 89/201 (44%), Gaps = 39/201 (19%)
Query: 377 LRDVYFRYP-ARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVI----SLVERFYDPDA 431
R++ F R ++ I FS V G ++G+ GSG ST++ + E +
Sbjct: 6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVE- 64
Query: 432 GEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELAN 491
G++ +GI K+ K+ E I VS+E + F T + + A+
Sbjct: 65 GDIHYNGIPYKEFAEKYPGEII-YVSEEDVHFPTLTVR-----------ETLDFALRC-- 110
Query: 492 AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESE-R 550
KG + + G +SGG+++R++IA A++ +L D +T LD+ +
Sbjct: 111 ---------KGNEFVRG-----ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALE 156
Query: 551 IVQDALVKIMT--SRTTVVVA 569
I++ ++ M +TT V+
Sbjct: 157 ILK--CIRTMADVLKTTTFVS 175
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 1e-07
Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 42/215 (19%)
Query: 393 FAGFSLHVPS-GTTAALVGQSGSGKSTVIS-----LVERFYDPDAGEVLIDGIDIKK--- 443
F + L +P G ++G +G GK+T + L+ D + E D + +K+
Sbjct: 88 FKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE-EEPSWDEV-LKRFRG 145
Query: 444 --LQ--LKWIRE-------KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANA 492
LQ K + K V P +F +RE ++ E
Sbjct: 146 TELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRE------------LLKKVDERGKL 193
Query: 493 AKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI- 551
+ +++L GL+ + ++LSGG+ QR+AIA A+L++ DE TS LD +R+
Sbjct: 194 DEVVERL--GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIR-QRLN 250
Query: 552 VQDALVKIMTSRTTVVVAHRLTTIRNADLIA-VVH 585
V + ++ + +VV H L + D +A VH
Sbjct: 251 VARLIRELAEGKYVLVVEHDLAVL---DYLADNVH 282
|
Length = 590 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 39/170 (22%)
Query: 400 VPSGTTAALVGQSGSGKSTVIS-LVERFYDPD-AGEVLIDGIDIKKLQLKWIREKIGLVS 457
V GT AL+G+SG+GK+T++ L R GE+LI+G + K + G V
Sbjct: 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKN----FQRSTGYVE 85
Query: 458 QEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGG 517
Q+ + +R A+ + + LS
Sbjct: 86 QQDVHSPNL---------------TVREALRFSALLR------------------GLSVE 112
Query: 518 QKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVV 567
Q++R+ I + P IL LDE TS LD+++ + L K+ S ++
Sbjct: 113 QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAIL 162
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-07
Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 28/237 (11%)
Query: 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
G + L R V +++ + +G+ V + G +G+G+S ++ I P SG
Sbjct: 254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASG 313
Query: 1098 HVLLDNI---------ELPKFKLSWL---RQQMGLVSQEPVLFNETIRT--NIAYGKQGG 1143
+LL+ E + L+++ R GLV + N + + + G
Sbjct: 314 RILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGF 373
Query: 1144 ATEEEIIAATEASNAHNFISAL---PHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKI 1200
I A I + LSGG +Q++ +AR + + P +
Sbjct: 374 LDRRAI-----RKFARELIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDL 424
Query: 1201 LLLDEATSALDAES-ERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVI 1255
L+ + T LD + E + + LE + ++++ L I +D IAV+ G I
Sbjct: 425 LIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRI 481
|
Length = 501 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-07
Identities = 64/240 (26%), Positives = 100/240 (41%), Gaps = 62/240 (25%)
Query: 1064 SIPSGKTVALVGESGSGKS----TVIALIERFYDPDSGHVLLDNIE-----LPKFKLSWL 1114
S+ G+ V +VGESGSGKS ++ LI+ G V+ + +E L +
Sbjct: 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDY-----PGRVMAEKLEFNGQDLQRISEKER 83
Query: 1115 RQQMG----LVSQEP---------VLFN--ETIRTNIAYGKQGGATEEEIIAATE----- 1154
R +G ++ Q+P V F E I+ + QGG + A +
Sbjct: 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH-----QGGNKKTRRQRAIDLLNQV 138
Query: 1155 -----ASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSA 1209
AS + PH QLSGG QR+ IA A+ PK+L+ DE T+A
Sbjct: 139 GIPDPASRLDVY----PH-----------QLSGGMSQRVMIAMAIACRPKLLIADEPTTA 183
Query: 1210 LDAESERVVQDALERVMV--NRTTVVVAHRLTTI-KNADIIAVVKNGVIAEQGSHDALMK 1266
LD + + + L + N V++ H L + + A I V+ G + E G + +
Sbjct: 184 LDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFR 243
|
Length = 326 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-07
Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 24/174 (13%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW 1113
D + +L +P G V ++G +G+GKST+ +I PDSG + + KL++
Sbjct: 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG----ETVKLAY 389
Query: 1114 LRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAH----NFISALPHGY 1169
+ Q S++ + N+T+ I+ GG ++ S A+ NF +
Sbjct: 390 VDQ-----SRDALDPNKTVWEEIS----GGLDIIQLGKREVPSRAYVGRFNFKGS---DQ 437
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALE 1223
+ VG QLSGG++ R+ +A+ + +LLLDE T+ LD E+ R +++AL
Sbjct: 438 QKKVG----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALL 487
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 20/167 (11%)
Query: 388 PEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLK 447
P V+ +L V + AL+G++G+GKST++ + Y D+G +L G K++ K
Sbjct: 9 PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQG---KEIDFK 65
Query: 448 WIREK----IGLVSQE-PILFATSLRENIAYG----KENATDQEIRTAIELANAAKFI-D 497
+E I +V QE ++ S+ +N+ G K DQ+ ++ K I D
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQD-----KMYRDTKAIFD 120
Query: 498 KLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
+L +D LS Q Q I IA+A N KI+++DE TS+L
Sbjct: 121 EL--DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL 165
|
Length = 491 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 2e-07
Identities = 57/230 (24%), Positives = 86/230 (37%), Gaps = 70/230 (30%)
Query: 378 RDVYFRYPARPEVQIFAGFSLHVPSGTTAA-----LVGQSGSGKSTVISLVERFYDPDAG 432
R+ YP + FSL V G +VG +G GK+T L+ PD G
Sbjct: 337 RETLVEYPDL--TKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEG 394
Query: 433 EVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIE---- 488
EV + LK +S +P Q I+ +
Sbjct: 395 EVDPE--------LK--------ISYKP--------------------QYIKPDYDGTVE 418
Query: 489 --LANAAKFID------------KLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKI 534
L + + +L + LD + LSGG+ QR+AIA + ++ +
Sbjct: 419 DLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKD----LSGGELQRVAIAACLSRDADL 474
Query: 535 LLLDEATSALDAESERIVQDALVKIMTSR--TTVVVAHRLTTIRNADLIA 582
LLDE ++ LD E V A+ +I R T +VV H + I D I+
Sbjct: 475 YLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMI---DYIS 521
|
Length = 590 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 35/200 (17%)
Query: 393 FAGFSLHVP-SGTTAALVGQSGSGKSTVISLVE--------RFYDPDAGEVLIDGIDIKK 443
F L VP G LVG +G GKST + ++ +F DP + ++D +
Sbjct: 15 FKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSE 74
Query: 444 LQ--LKWIRE-------KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAK 494
LQ + E K V P + E + D E +
Sbjct: 75 LQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELL-----KKKD-------ERGKLDE 122
Query: 495 FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD 554
+D+L L + + QLSGG+ QR+AIA A+ ++ DE +S LD + +R+
Sbjct: 123 LVDQL--ELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK-QRLNAA 179
Query: 555 ALVK--IMTSRTTVVVAHRL 572
L++ +VV H L
Sbjct: 180 RLIRELAEDDNYVLVVEHDL 199
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 3e-07
Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 39/200 (19%)
Query: 361 YDTSGITLEKI-----EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSG 415
Y +GI E I G++ + + F VPSG + G +G G
Sbjct: 447 YQDNGIKFENIPLVTPNGDVLIESLSFE----------------VPSGNNLLICGPNGCG 490
Query: 416 KSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAY-- 473
KS++ ++ + G + + K+ V Q P + +LR+ I Y
Sbjct: 491 KSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPD 539
Query: 474 GKENATDQEIRTA--IELANAAKFIDKLPK--GLDTMAGEHGTQLSGGQKQRIAIARAIL 529
E+ + + ++ + + L + G + + LSGG+KQRIA+AR
Sbjct: 540 SSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQ-DWMDVLSGGEKQRIAMARLFY 598
Query: 530 KNPKILLLDEATSALDAESE 549
P+ +LDE TSA+ + E
Sbjct: 599 HKPQFAILDECTSAVSVDVE 618
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 48/192 (25%)
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118
+NL +SIP V + G SGSGKST+ + E Y SG L LPKF
Sbjct: 12 QNLDVSIPLNVLVVVTGVSGSGKSTL--VNEGLYA--SGKARL-ISFLPKF--------- 57
Query: 1119 GLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGV 1178
S+ ++F + ++ I G + L G + +
Sbjct: 58 ---SRNKLIFIDQLQFLIDVG----------------------LGYLTLGQKLST----- 87
Query: 1179 QLSGGQKQRIAIARAVLKNPK--ILLLDEATSALDAESERVVQDALERVMVNRTTV-VVA 1235
LSGG+ QR+ +A + P + +LDE ++ L + + + ++ ++ TV ++
Sbjct: 88 -LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIE 146
Query: 1236 HRLTTIKNADII 1247
H L + +AD I
Sbjct: 147 HNLDVLSSADWI 158
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 3e-07
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 32/188 (17%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+E+ ++ + P +F +L + +G A++G++G GK+T++ + +PD+G V
Sbjct: 320 LEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
Query: 435 LIDGIDIKKLQLKWIRE-KIGLVSQEPIL-FAT--SLRENIA-YGKENATDQEIRTAI-E 488
KW IG +Q+ F +L + ++ + +E +Q +R +
Sbjct: 377 ------------KWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGR 424
Query: 489 LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
L + I K K LSGG+K R+ + +++ P +L++DE T+ +D ES
Sbjct: 425 LLFSQDDIKKSVK-----------VLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMES 473
Query: 549 ERIVQDAL 556
+ AL
Sbjct: 474 IESLNMAL 481
|
Length = 530 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-07
Identities = 52/231 (22%), Positives = 97/231 (41%), Gaps = 44/231 (19%)
Query: 378 RDVYFRYPARPEVQIFAGFSLHVP-SGTTAALVGQSGSGKSTVISLVE--------RFYD 428
+V RY V F + L P G ++G +G GKST + ++ R+ D
Sbjct: 78 EEVVHRY----GVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYED 133
Query: 429 PDAGEVLIDGIDIKKLQ--LKWIRE-------KIGLVSQEPILFATSLRENIAYGKENAT 479
P + + +I +LQ K + E K V P + + E
Sbjct: 134 PPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGE---------- 183
Query: 480 DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDE 539
++ E + +++L GL+ + ++LSGG+ QR+AIA A+L++ + DE
Sbjct: 184 --LLKKVDERGKFDEVVERL--GLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDE 239
Query: 540 ATSALDAESE----RIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVH 585
+S LD R++++ + +VV H L + +D + +++
Sbjct: 240 PSSYLDIRQRLNAARVIRELA---EDGKYVIVVEHDLAVLDYLSDFVHILY 287
|
Length = 591 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 45/180 (25%)
Query: 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLD--NIE-LPKFKLSWLRQ 1116
N+ L + + V+L+G +G+GK+TV + FY P G +LL +IE LP +++
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA---- 78
Query: 1117 QMGLVSQEPVLFNETIRT--NIAYGKQGGATEEEIIAATEASNAHNFISAL---PHGY-- 1169
+MG+V RT ++ ++ E ++A + S L P +
Sbjct: 79 RMGVV-----------RTFQHVRLFREMTVIENLLVAQHQQLKT-GLFSGLLKTP-AFRR 125
Query: 1170 -ETNVGERGVQ-----------------LSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
E+ +R L+ GQ++R+ IAR ++ P+IL+LDE + L+
Sbjct: 126 AESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 7e-07
Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 51/195 (26%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
I D F YP P +F + + + A+VG +G GKST++ L+ P +G V
Sbjct: 509 ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 435 L--------------IDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATD 480
+DG+D+ S P+L+ + +
Sbjct: 567 FRSAKVRMAVFSQHHVDGLDL---------------SSNPLLY-------MMRCFPGVPE 604
Query: 481 QEIRTAIELANAAKFIDKLPKGLD-TMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDE 539
Q++R A+ F G+ +A + LSGGQK R+A A+ K P ILLLDE
Sbjct: 605 QKLR-----AHLGSF------GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653
Query: 540 ATSALDAES-ERIVQ 553
++ LD ++ E ++Q
Sbjct: 654 PSNHLDLDAVEALIQ 668
|
Length = 718 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 7e-07
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 1178 VQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN--RTTVVVA 1235
+ LSGG+ QR+AIA A+L+N L DE ++ LD E A+ R+ +T +VV
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 1236 HRLTTIKN-ADIIAVV 1250
H L + +D I V
Sbjct: 130 HDLAVLDYLSDRIHVF 145
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 8e-07
Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 48/196 (24%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVE----RFYDPD 430
I L + Y RP I S V G +VG +G+GKST++SL+ + Y D
Sbjct: 261 IVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSND 317
Query: 431 ---------AGEVLIDGIDIKKLQLKWIREKIGLVSQEPIL---FATSLRENIAYG---- 474
+GE + D I++ IG VS L +TS+R I G
Sbjct: 318 LTLFGRRRGSGETIWD-----------IKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDS 366
Query: 475 ---KENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQ-LSGGQKQRIA-IARAIL 529
+ +D++ + A + ++D L G+D + LS GQ QR+A I RA++
Sbjct: 367 IGIYQAVSDRQQKLAQQ------WLDIL--GIDKRTADAPFHSLSWGQ-QRLALIVRALV 417
Query: 530 KNPKILLLDEATSALD 545
K+P +L+LDE LD
Sbjct: 418 KHPTLLILDEPLQGLD 433
|
Length = 490 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 9e-07
Identities = 55/188 (29%), Positives = 82/188 (43%), Gaps = 38/188 (20%)
Query: 1068 GKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ-----QMGLVS 1122
G+ + +VG +G GK+T L+ PD G V P+ K+S+ Q G V
Sbjct: 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVD------PELKISYKPQYIKPDYDGTVE 418
Query: 1123 QEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSG 1182
+L + T +Y K EII L + NV + LSG
Sbjct: 419 D--LLRSITDDLGSSYYK------SEIIKPL----------QLERLLDKNVKD----LSG 456
Query: 1183 GQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR--TTVVVAHRLTT 1240
G+ QR+AIA + ++ + LLDE ++ LD E V A+ R+ R T +VV H +
Sbjct: 457 GELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYM 516
Query: 1241 IKNADIIA 1248
I D I+
Sbjct: 517 I---DYIS 521
|
Length = 590 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 9e-07
Identities = 53/196 (27%), Positives = 93/196 (47%), Gaps = 26/196 (13%)
Query: 368 LEKIEGEIELRDVYFRYPARPEV-QIFAGFSLHVPSGTTAALVGQSGSGKSTVIS-LVER 425
E E R++ + + E I V GT AL+G SG+GK+T+++ L ER
Sbjct: 753 KESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAER 812
Query: 426 FYDPDAGEVLIDGIDI---KKLQLKWIREKIGLVSQEPILFATS-LRENIAYGKENATDQ 481
V+ G + + L + R IG V Q+ + TS +RE++ +
Sbjct: 813 V----TTGVITGGDRLVNGRPLDSSFQR-SIGYVQQQDLHLPTSTVRESLRFSA------ 861
Query: 482 EIRTAIELANAAK--FIDKLPKGL------DTMAGEHGTQLSGGQKQRIAIARAILKNPK 533
+R ++ + K +++++ K L D + G G L+ Q++R+ I ++ PK
Sbjct: 862 YLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPK 921
Query: 534 ILL-LDEATSALDAES 548
+LL LDE TS LD+++
Sbjct: 922 LLLFLDEPTSGLDSQT 937
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-06
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 43/208 (20%)
Query: 395 GFSLHVPSGTTA-----ALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIK---KLQL 446
F L V G ++G +G GK+T + L+ PD G D+K K Q
Sbjct: 354 DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE----EDLKVSYKPQ- 408
Query: 447 KWIR-EKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDT 505
+I + G V L +++R +T E+ D L + +D
Sbjct: 409 -YISPDYDGTVED---LLRSAIRSAF-------GSSYFKT--EIVKPLNLEDLLERPVDE 455
Query: 506 MAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR-- 563
LSGG+ QR+AIA A+ + + LLDE ++ LD E IV + + + +
Sbjct: 456 --------LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEK 507
Query: 564 TTVVVAHRLTTIRNADLIA---VVHQGK 588
T +VV H + I D ++ +V +G+
Sbjct: 508 TALVVDHDIYMI---DYVSDRLIVFEGE 532
|
Length = 591 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 1e-06
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 1171 TNVGERGV-QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV-VQDALERVMVN 1228
N+ +R + +LSGG+ QR+AIA A+L++ DE TS LD +R+ V + +
Sbjct: 203 ENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIR-QRLNVARLIRELAEG 261
Query: 1229 RTTVVVAHRLTTIKN-ADIIAVV 1250
+ +VV H L + AD + +
Sbjct: 262 KYVLVVEHDLAVLDYLADNVHIA 284
|
Length = 590 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 57/224 (25%), Positives = 92/224 (41%), Gaps = 48/224 (21%)
Query: 393 FAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFY---DPDAGEVLIDGIDIKKLQLKWI 449
F SL V +G L G G+G++ L E Y G ++++G +I L
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRT---ELAETLYGLRPARGGRIMLNGKEINALSTA-Q 334
Query: 450 REKIGLV-----SQEPILFA-TSLRENIAY------------GKENATDQEIRTAIELAN 491
R GLV Q L+ L N+ +ENA + R A+ +
Sbjct: 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNI-- 392
Query: 492 AAKFIDKLPKGLDTMAGEHGTQ----LSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
KF H Q LSGG +Q++ IA+ + +P++L++DE T +D
Sbjct: 393 --KF-------------NHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437
Query: 548 SERIVQDALVKIMTSRTTVV-VAHRLTTIRN-ADLIAVVHQGKI 589
+ + + I V+ ++ L I AD + V+HQG+I
Sbjct: 438 ARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-06
Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 45/232 (19%)
Query: 396 FSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD-AGEVLIDG--IDIKKLQLKWIREK 452
FSL G + G G+G++ ++ + Y G V I+G +DI+ + IR
Sbjct: 281 FSLR--RGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPA-QAIRAG 337
Query: 453 IGLVSQE-------PIL-------------FATSLRENIAYGKENATDQEIRTAIELANA 492
I +V ++ PIL F +R + A A Q I +AI+
Sbjct: 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAA-----AELQIIGSAIQRLKV 392
Query: 493 AKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIV 552
LP G +LSGG +Q+ +A+ +L NP++L+LDE T +D ++ +
Sbjct: 393 KTASPFLPIG----------RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEI 442
Query: 553 QDALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601
L+ + +VV+ L + +D + V+ +GK+ + L ++
Sbjct: 443 Y-KLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHALTQE 493
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 46/184 (25%), Positives = 71/184 (38%), Gaps = 73/184 (39%)
Query: 1058 FRNLCLSIP-----------------SGKTVALVGESGSGKST---VIA------LIERF 1091
++NL ++P G AL+GESG+GK+T V+A +I
Sbjct: 6 WKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT-- 63
Query: 1092 YDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYGKQGGATEEEII 1150
G +L++ L K ++ G V Q+ V N T+R + +
Sbjct: 64 -----GEILINGRPLDKN----FQRSTGYVEQQDVHSPNLTVREALRF------------ 102
Query: 1151 AATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL 1210
SAL G LS Q++R+ I + P IL LDE TS L
Sbjct: 103 ------------SALLRG-----------LSVEQRKRLTIGVELAAKPSILFLDEPTSGL 139
Query: 1211 DAES 1214
D+++
Sbjct: 140 DSQA 143
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-06
Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 33/209 (15%)
Query: 1047 FKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALI----ERFYDPDSGHVLLD 1102
K+ I + + I G+ ++G GSG ST++ I + F+ G + D
Sbjct: 66 KKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYD 125
Query: 1103 NIELPKFKLSWLRQQMGLV---SQEPVLF-----NETIRTNIAYGKQG----GATEEEII 1150
I + K + G V ++ V F ET+ G + EE
Sbjct: 126 GITPEEIK----KHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYA 181
Query: 1151 AATEASNAHNFISALPHGYETNVGE---RGVQLSGGQKQRIAIARAVLKNPKILLLDEAT 1207
+ L H T VG RGV SGG+++R++IA A L KI D AT
Sbjct: 182 KHIADVYMATY--GLSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNAT 237
Query: 1208 SALDAESERVVQDALERVMVNRTTVVVAH 1236
LD+ + ALE + +T+ +
Sbjct: 238 RGLDSAT------ALEFIRALKTSANILD 260
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-06
Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 36/189 (19%)
Query: 403 GTTAALVGQSGSGKSTVISL---------VERFYDPDAGEVLIDGIDIKKLQLKWIR--- 450
G AL+G SG+GK+T++ + +E G++ I G K+ I
Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIE-------GDIRISGFPKKQETFARISGYC 958
Query: 451 EKIGLVS-----QEPILFATSLRENIAYGKENATD--QEIRTAIELANAAKFIDKLPKGL 503
E+ + S +E ++++ LR KE E+ +EL N I LP G+
Sbjct: 959 EQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLP-GV 1017
Query: 504 DTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM-TS 562
T LS Q++R+ IA ++ NP I+ +DE TS LDA + IV + + T
Sbjct: 1018 --------TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1069
Query: 563 RTTVVVAHR 571
RT V H+
Sbjct: 1070 RTVVCTIHQ 1078
|
Length = 1470 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-06
Identities = 55/242 (22%), Positives = 108/242 (44%), Gaps = 34/242 (14%)
Query: 1058 FRNLCLSIPSGKTVALVGESGSGKSTVIALIERFY---DPDSGHVLLDNIELPKFK---- 1110
FRN+ L + +G+ + L G G+G++ L E Y G ++L+ E+
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRT---ELAETLYGLRPARGGRIMLNGKEINALSTAQR 335
Query: 1111 ----LSWL---RQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFIS 1163
L +L RQ GL P+ +N + + ++G + A E + +
Sbjct: 336 LARGLVYLPEDRQSSGLYLDAPLAWNV---CALTHNRRGFWIKP----ARENAVLERYRR 388
Query: 1164 ALPHGYETNVGERGVQ-LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDAL 1222
AL + N E+ + LSGG +Q++ IA+ + +P++L++DE T +D + + +
Sbjct: 389 AL--NIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLI 446
Query: 1223 ERVMVNRTTVV-VAHRLTTI-KNADIIAVVKNGVIA-----EQGSHDALMKITDGAYASL 1275
+ V+ ++ L I + AD + V+ G I+ + D +M++ G + +
Sbjct: 447 RSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVDTIMRLAFGEHQAQ 506
Query: 1276 VA 1277
A
Sbjct: 507 EA 508
|
Length = 510 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 4e-06
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IEL ++ Y + + SL + G LVG++G+GKST++ L+ +PD G V
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQ 458
KIG Q
Sbjct: 58 TWGS-----------TVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 69/255 (27%), Positives = 104/255 (40%), Gaps = 72/255 (28%)
Query: 400 VPSGTTAALVGQSGSGKSTVI------SLVERFY--DPDAGEVLIDGIDIKKLQLKWIRE 451
+P G + G SGSGKS++I +L R + G D I+ L+ I +
Sbjct: 18 IPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNH--DRIE----GLEHI-D 70
Query: 452 KIGLVSQEPILFATSLRENIA-Y----------------GKE-NATDQEIR--------- 484
K+ ++ Q PI + R N A Y GK N E+R
Sbjct: 71 KVIVIDQSPI--GRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADV 128
Query: 485 ---TAIELANAAKFIDKLPK-----------GLDTMA-GEHGTQLSGGQKQRIAIARAIL 529
T E A +F + +PK GL + G+ T LSGG+ QRI +A+ +
Sbjct: 129 LDMTVEE---ALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELS 185
Query: 530 K---NPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVA-HRLTTIRNADLI---- 581
K + +LDE T+ L + + + L +++ TVVV H L I+ AD I
Sbjct: 186 KRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIIDLG 245
Query: 582 --AVVHQGKIVEKGT 594
G++V GT
Sbjct: 246 PEGGDGGGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 63/241 (26%), Positives = 99/241 (41%), Gaps = 46/241 (19%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVI-ALIERFYDPD-------SGHVLLDNIEL-- 1106
I R+L L I G+ AL+G +G+GKST++ AL +G V L+ L
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 1107 -PKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYG-----KQGGATEEE----IIAATEAS 1156
+L+ LR + +Q F + R + G ++ GA A +
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAF--SAREIVLLGRYPHARRAGALTHRDGEIAWQALALA 133
Query: 1157 NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLK---------NPKILLLDEAT 1207
A VG LSGG+ R+ AR + + P+ LLLDE T
Sbjct: 134 GA-----------TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT 182
Query: 1208 SALDAESERVVQDALERVMV--NRTTVVVAHRLT-TIKNADIIAVVKNGVIAEQGS-HDA 1263
+ALD + + D + R+ N + + H ++AD IA++ +G I G+ D
Sbjct: 183 AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV 242
Query: 1264 L 1264
L
Sbjct: 243 L 243
|
Length = 272 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 55/207 (26%), Positives = 89/207 (42%), Gaps = 25/207 (12%)
Query: 386 ARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ 445
+R E +F HV +G + G +G+GK+T++ ++ ++G++ IDG +
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 446 LKWIREK-IGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGL 503
R + + + P L A S EN+ + R A ++ +A I L
Sbjct: 80 ----RSRFMAYLGHLPGLKADLSTLENLHF----LCGLHGRRAKQMPGSALAIVGLAGYE 131
Query: 504 DTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD--------- 554
DT+ QLS GQK+R+A+AR L + LLDE + LD E +V
Sbjct: 132 DTLV----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGG 187
Query: 555 --ALVKIMTSRTTVVVAHRLTTIRNAD 579
ALV + V R+ T+ A
Sbjct: 188 GAALVTTHGAYAAPPVRTRMLTLEAAA 214
|
Length = 214 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 5e-06
Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 44/201 (21%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV-LLDNIELPKF--- 1109
D I ++ L++ G + L+G +G+GKST+I L+ P SG + L I+L F
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQH 383
Query: 1110 KLSWLRQQMG----LVSQEPVLFNETIRTNI-AYGKQGGATEEEIIAATEASNAHNFISA 1164
+L +LR L P + +R + +G QG EE T
Sbjct: 384 QLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEE----TR---------- 429
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224
+ SGG+K R+ +A V + P +LLLDE T+ LD + + + +AL
Sbjct: 430 --------------RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL-- 473
Query: 1225 VMVNRTTVVVAH-----RLTT 1240
+ VVV+H R TT
Sbjct: 474 IDFEGALVVVSHDRHLLRSTT 494
|
Length = 638 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 6e-06
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 20/117 (17%)
Query: 502 GLD--TMAGEHGTQLSGGQKQRIAIARAILKNPKILL--LDEATSAL-DAESERIVQDAL 556
GL T++ GT LSGG+ QRI +A I +L LDE + L ++ER+++ L
Sbjct: 469 GLGYLTLSRSAGT-LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIE-TL 526
Query: 557 VKIMTSR----TTVVVAHRLTTIRNADLI------AVVHQGKIVEKGTHDELIKDPE 603
++ R T +VV H TIR AD I A H G+IV +GT +EL+ +PE
Sbjct: 527 KRL---RDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPE 580
|
Length = 935 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 7e-06
Identities = 50/225 (22%), Positives = 100/225 (44%), Gaps = 25/225 (11%)
Query: 1051 TRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL-PKF 1109
T D + R++ S+ G+ + G GSG++ ++ + G + L+ ++ P+
Sbjct: 272 TSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS 331
Query: 1110 KLSWLRQQMGLVSQ---EPVLF-NETIRTNIAY------GKQGGATE--EEIIAATEASN 1157
L +++ M +++ + F N +I N+A G GA E+ A N
Sbjct: 332 PLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAEN 391
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD----AE 1213
++ H N+ E LSGG +Q++ I++ + P++++ DE T +D AE
Sbjct: 392 QRELLALKCHSVNQNITE----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAE 447
Query: 1214 SERVVQDALERVMVNRTTVVVAHRLTTIKNA-DIIAVVKNGVIAE 1257
+V++ + + ++V+ L I D IAV G + +
Sbjct: 448 IYKVMRQLADD---GKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 8e-06
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 33/174 (18%)
Query: 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119
N +I G+ V LVG++G GKST++AL++ D G F +W Q+
Sbjct: 19 NATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY--------TFPGNW---QLA 67
Query: 1120 LVSQE-PVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFI---------------- 1162
V+QE P L + I ++ E ++ A E ++ H
Sbjct: 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRS 127
Query: 1163 --SALPHG--YETNVGERGVQ-LSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
++L HG + ER V SGG + R+ +A+A++ +LLLDE T+ LD
Sbjct: 128 RAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 9e-06
Identities = 56/197 (28%), Positives = 85/197 (43%), Gaps = 39/197 (19%)
Query: 408 LVGQSGSGKSTV-----------------ISLVERFYDPDAGEVL--IDGIDIKKLQLKW 448
LVG++G+GK+T I VE+ D L + DI++ QL
Sbjct: 208 LVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQL-- 265
Query: 449 IREKIGLVSQ-----EPILFATSLRENIAYGKENATDQ---EIRTAIEL-------ANAA 493
+ E+ LV+Q N ++A Q EI +EL A AA
Sbjct: 266 LEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
+ L + M + SGG + RIA+ARA+ P +LLLDE T+ LD + ++
Sbjct: 326 SILAGLSFTPE-MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLE 384
Query: 554 DALVKIMTSRTTVVVAH 570
L+K +T +VV+H
Sbjct: 385 TYLLK--WPKTFIVVSH 399
|
Length = 718 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 9e-06
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 1171 TNVGERGV-QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE----RVVQDALERV 1225
NV +R V +LSGG+ QR+AIA A+L++ + DE +S LD RV+++ E
Sbjct: 204 ENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED- 262
Query: 1226 MVNRTTVVVAHRLTTIKN-ADIIAVV 1250
+ +VV H L + +D + ++
Sbjct: 263 --GKYVIVVEHDLAVLDYLSDFVHIL 286
|
Length = 591 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 54/255 (21%), Positives = 100/255 (39%), Gaps = 62/255 (24%)
Query: 1044 CVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALI------------ERF 1091
+ FK V+ + +++ G+ LVGESGSGKS + I +R
Sbjct: 10 TIEFKTSQGW-VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRM 68
Query: 1092 YDPDSGHVLLDNIEL----PKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-----G 1142
D+I+L P+ + + + ++ QEP + G+Q
Sbjct: 69 R--------FDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSER---VGRQLIQNIP 117
Query: 1143 GATEE---------------EIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQR 1187
T + E++ + + + + P YE L+ G+ Q+
Sbjct: 118 AWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP--YE---------LTEGECQK 166
Query: 1188 IAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVV--VAHRLTTIKN-A 1244
+ IA A+ P++L+ DE T++++ ++ + L R+ N T + ++H L I A
Sbjct: 167 VMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWA 226
Query: 1245 DIIAVVKNGVIAEQG 1259
D I V+ G E
Sbjct: 227 DKINVLYCGQTVESA 241
|
Length = 330 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 1e-05
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IEL +S Y + + +++ L+I G + LVG +G+GKST++ LI +PD G V
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 1100 LLDNIELPKFKLSWLRQ 1116
K+ + Q
Sbjct: 58 TWG----STVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 50/212 (23%), Positives = 86/212 (40%), Gaps = 43/212 (20%)
Query: 1063 LSIP-SGKTVALVGESGSGKSTVIALIE--------RFYDPDSGHVLLDNI---ELPKFK 1110
L +P G+ + LVG +G GKST + ++ +F DP +LD EL +
Sbjct: 20 LPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYF 79
Query: 1111 LSWLRQQMGL------VSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISA 1164
L + + V P + + + G +E++ E
Sbjct: 80 TKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERG-KLDELVDQLEL--------- 129
Query: 1165 LPHGYETNVGERGV-QLSGGQKQRIAIARAVLKNPKILLLDEATSALDA----ESERVVQ 1219
+V +R + QLSGG+ QR+AIA A+ ++ DE +S LD + R+++
Sbjct: 130 ------RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIR 183
Query: 1220 DALERVMVNRTTVVVAHRLTTIKN-ADIIAVV 1250
E + +VV H L + +D I +
Sbjct: 184 ---ELAEDDNYVLVVEHDLAVLDYLSDYIHCL 212
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-05
Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 26/175 (14%)
Query: 432 GEVLIDG--IDIKKLQLKWIREKIGLVSQE-------PILFATSLRENI--AYGKENATD 480
GE+ IDG + I+ Q + I + I +V ++ P++ + +NI A
Sbjct: 318 GEIFIDGKPVKIRNPQ-QAIAQGIAMVPEDRKRDGIVPVM---GVGKNITLAALDRFTGG 373
Query: 481 QEIRTAIELANAAKFIDKLP-KGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDE 539
I A EL + I +L K +LSGG +Q+ +A+ +L NPKIL+LDE
Sbjct: 374 SRIDDAAELKTILESIQRLKVKTASPELAI--ARLSGGNQQKAVLAKCLLLNPKILILDE 431
Query: 540 ATSALD----AESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKI 589
T +D E +++ + LV+ + +V++ L + +D + V+H+GK+
Sbjct: 432 PTRGIDVGAKYEIYKLI-NQLVQQGVA--IIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 4e-05
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 514 LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHR 571
LSGG+ QR+AIA A+L+N L DE ++ LD E A+ ++ +T +VV H
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131
Query: 572 LTTIRN-ADLIAVVH 585
L + +D I V
Sbjct: 132 LAVLDYLSDRIHVFE 146
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-05
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 27/173 (15%)
Query: 398 LHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDG-IDIKKLQLKWIREKIGLV 456
LH+ LVG++G+GKST++ ++ D G ++ + + + +LQ R G V
Sbjct: 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTV 83
Query: 457 SQEPILFATSLRENIAYGKEN-------ATDQ---------EIRTAIELANAAKFIDKLP 500
A + E Y K TD +++ ++ N + +++
Sbjct: 84 YD---FVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRIN 140
Query: 501 K-----GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
+ GLD + LSGG ++ A+ RA++ NP +LLLDE T+ LD E+
Sbjct: 141 EVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET 191
|
Length = 635 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-05
Identities = 63/269 (23%), Positives = 117/269 (43%), Gaps = 43/269 (15%)
Query: 362 DTSGITLEKIEGEI---ELRDVYFRYPARP--EVQIFA----------GFSLHVPSGTTA 406
D + + +++ + E+ D+Y Y RP EV++ S V +G
Sbjct: 224 DMAQVDRDQLVQAMVGREIGDIY-GYRPRPLGEVRLRLDGLKGPGLREPISFSVRAGEIV 282
Query: 407 ALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI--GLV------SQ 458
L G G+G+S ++ L+ AG+V +DG K + ++ R+ I G++
Sbjct: 283 GLFGLVGAGRSELMKLLYGATRRTAGQVYLDG---KPIDIRSPRDAIRAGIMLCPEDRKA 339
Query: 459 EPILFATSLRENI---AYGKENATDQEIRTAIELANAAKFIDKL---PKGLDTMAGEHGT 512
E I+ S+ +NI A I E NA +FI L + +
Sbjct: 340 EGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM---- 395
Query: 513 QLSGGQKQRIAIARAILKNPKILLLDEATSALD--AESERIVQDALVKIMTS-RTTVVVA 569
LSGG +Q+ + R + ++ K++LLDE T +D A+ E + + + ++ + V+
Sbjct: 396 NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHE--IYNVIYELAAQGVAVLFVS 453
Query: 570 HRLTTIRN-ADLIAVVHQGKIVEKGTHDE 597
L + AD I V+ +G+I + ++
Sbjct: 454 SDLPEVLGVADRIVVMREGRIAGELAREQ 482
|
Length = 501 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 40/207 (19%), Positives = 75/207 (36%), Gaps = 55/207 (26%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLV 456
+ +P + G SGSGKST+++ + + +
Sbjct: 15 DVSIPLNVLVVVTGVSGSGKSTLVNEG-----------------LYASGKARLISFLPKF 57
Query: 457 SQEPILFATSLRENIAYGKENAT-DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLS 515
S+ ++F L+ I G T Q++ T LS
Sbjct: 58 SRNKLIFIDQLQFLIDVGLGYLTLGQKLST----------------------------LS 89
Query: 516 GGQKQRIAIARAILKNPK--ILLLDEATSALDAESERIVQDALVKIMTSRTTV-VVAHRL 572
GG+ QR+ +A + P + +LDE ++ L + + + + ++ TV ++ H L
Sbjct: 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149
Query: 573 TTIRNADLI------AVVHQGKIVEKG 593
+ +AD I + GK+V G
Sbjct: 150 DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 41/178 (23%)
Query: 1051 TRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK 1110
+R + +F L + +G+ + + G++G+GK+T++ ++ +SG + +D
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG------- 72
Query: 1111 LSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYE 1170
+ + R +AY + ++ N H F+ L HG
Sbjct: 73 -------------KTATRGDRSR-FMAYLGHLPGLKADLSTL---ENLH-FLCGL-HGRR 113
Query: 1171 ---------TNVGERGV------QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAE 1213
VG G QLS GQK+R+A+AR L + LLDE + LD E
Sbjct: 114 AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171
|
Length = 214 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-05
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 512 TQLSGGQKQRIAIARAILK---NPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVV 568
T LSGG+ QR+ +A+ + K + +LDE T+ L + + + + L +++ TV+V
Sbjct: 821 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIV 880
Query: 569 -AHRLTTIRNADLI------AVVHQGKIVEKGTHDELIKDPE---GPY 606
H L I+ AD I G+IV GT +E+ K G Y
Sbjct: 881 IEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKY 928
|
Length = 935 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 7e-05
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 22/130 (16%)
Query: 492 AAKFIDKLPK-----------GLDTMA-GEHGTQLSGGQKQRIAIARAILK---NPKILL 536
A +F + +P GL + G+ T LSGG+ QRI +A+ + K + +
Sbjct: 796 AYEFFEAVPSISRKLQTLCDVGLGYIRLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYI 855
Query: 537 LDEATSALDAESERIVQDALVKIMTSRTTVVV-AHRLTTIRNADLI------AVVHQGKI 589
LDE T+ L + + + + L +++ TVVV H L I+ AD I G +
Sbjct: 856 LDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTV 915
Query: 590 VEKGTHDELI 599
V GT +E+
Sbjct: 916 VASGTPEEVA 925
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 8e-05
Identities = 47/208 (22%), Positives = 66/208 (31%), Gaps = 68/208 (32%)
Query: 1049 YPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPK 1108
Y DV I G +GSGKST +LD I L
Sbjct: 10 YFVPNDVTFGEGSLTII--------TGPNGSGKST----------------ILDAIGL-- 43
Query: 1109 FKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHG 1168
L T G + G I+AA A I
Sbjct: 44 -----------------ALGGAQSATRRRSGVKAG----CIVAAVSAE----LIFTRL-- 76
Query: 1169 YETNVGERGVQLSGGQKQRIAIARAV---LKNPKIL-LLDEATSALDAESERVVQDALER 1224
QLSGG+K+ A+A + P+ L +LDE LD + + +A+
Sbjct: 77 ----------QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILE 126
Query: 1225 VMVNRTTVVVA-HRLTTIKNADIIAVVK 1251
+V V+V H + AD + +K
Sbjct: 127 HLVKGAQVIVITHLPELAELADKLIHIK 154
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 60/215 (27%), Positives = 92/215 (42%), Gaps = 57/215 (26%)
Query: 1058 FRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ- 1116
F N+ + G L+G +G GKST + ++ +P +G+V LD P +L LRQ
Sbjct: 17 FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD----PNERLGKLRQD 72
Query: 1117 ------------------QMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNA 1158
++ V QE R I Y +EE+ + +
Sbjct: 73 QFAFEEFTVLDTVIMGHTELWEVKQE--------RDRI-YAL-PEMSEEDGMKVADLEVK 122
Query: 1159 HNFISALPHGY--ETNVGE--RGV------------QLSGGQKQRIAIARAVLKNPKILL 1202
A GY E GE GV +++ G K R+ +A+A+ NP ILL
Sbjct: 123 F----AEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILL 178
Query: 1203 LDEATSALDAESERVVQDAL-ERVMVNRTTVVVAH 1236
LDE T+ LD + R ++D L ER N T ++++H
Sbjct: 179 LDEPTNNLDINTIRWLEDVLNER---NSTMIIISH 210
|
Length = 530 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 27/198 (13%)
Query: 1055 VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF----- 1109
+Q+ R + + G AL+G SG+GK+T L++ +G + +I + F
Sbjct: 893 LQLLREVTGAFRPGVLTALMGVSGAGKTT---LMDVLAGRKTGGYIEGDIRISGFPKKQE 949
Query: 1110 ---KLSWLRQQMGLVS-----QEPVLFNETIRTNIAYGKQGGAT-EEEIIAATEASNAHN 1160
++S +Q + S +E ++++ +R K+ +E++ E N +
Sbjct: 950 TFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKD 1009
Query: 1161 FISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQD 1220
I LP G G LS Q++R+ IA ++ NP I+ +DE TS LDA + +V
Sbjct: 1010 AIVGLP-------GVTG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1060
Query: 1221 ALER-VMVNRTTVVVAHR 1237
+ V RT V H+
Sbjct: 1061 TVRNTVDTGRTVVCTIHQ 1078
|
Length = 1470 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 761 ALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVG 820
A Y+ L ++ Q+ F A +++++R+ + + Q +S FD G +
Sbjct: 68 AAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFD--TQPVGQLI 125
Query: 821 ARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLV 875
+R++ D IR L +A V+++ A I A L+ F+ +W +A V + + P +LV
Sbjct: 126 SRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLV 180
|
Length = 592 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 2e-04
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 11/181 (6%)
Query: 1061 LCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGL 1120
LC+ + G+ L+G +G+GK+T ++ SG + + +S + Q MG
Sbjct: 1958 LCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGY 2016
Query: 1121 VSQEPVLFNE-TIRTNI-AYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGV 1178
Q + + T R ++ Y + G EEI S I +L G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWS-----IQSL--GLSLYADRLAG 2069
Query: 1179 QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN-RTTVVVAHR 1237
SGG K++++ A A++ P ++LLDE T+ +D ++ R++ + + ++ R V+ +H
Sbjct: 2070 TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHS 2129
Query: 1238 L 1238
+
Sbjct: 2130 M 2130
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 2e-04
Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 504 DTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM-TS 562
D +AG + SGG K++++ A A++ P ++LLDE T+ +D ++ R++ + +V I+
Sbjct: 2065 DRLAGTY----SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREG 2120
Query: 563 RTTVVVAHRL 572
R V+ +H +
Sbjct: 2121 RAVVLTSHSM 2130
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 14/84 (16%)
Query: 514 LSGGQKQRIAIARAILKNPKILLLDEATSALD--AESE------RIVQDALVKIMTSRTT 565
LSGG +Q++AIAR ++ PK+L+LDE T +D A+ E + + L I+ S
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM 455
Query: 566 VVVAHRLTTIRNADLIAVVHQGKI 589
V + +D I V+H+G+I
Sbjct: 456 PEV------LGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 1180 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAES 1214
LSGG ++ A+ RA++ NP +LLLDE T+ LD E+
Sbjct: 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET 191
|
Length = 635 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-04
Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 21/206 (10%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLV 456
S VP G ++G +GSGKST+ +L+ P+ G V I G I GL
Sbjct: 44 SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG------SAALIAISSGLN 97
Query: 457 SQEPILFATSLRENIAYGKENATDQEIR-TAIELANAAKFIDKLPKGLDTMAGEHGTQLS 515
Q + L+ + G +EI IE A+ KFI + K S
Sbjct: 98 GQLTGIENIELK-GLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVK-----------TYS 145
Query: 516 GGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTT 574
G K R+ A ++ NP IL++DEA S D + D + + +T ++H L+
Sbjct: 146 SGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ 205
Query: 575 IRNADLIAV-VHQGKIVEKGTHDELI 599
+++ A+ +H G++ E G E++
Sbjct: 206 VKSFCTKALWLHYGQVKEYGDIKEVV 231
|
Length = 549 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-04
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 18/107 (16%)
Query: 1158 AHNFISALPH-------------GYETNVGERGVQLSGGQKQRIAIARAVLK---NPKIL 1201
A+ F A+P GY +G+ LSGG+ QRI +A+ + K +
Sbjct: 796 AYEFFEAVPSISRKLQTLCDVGLGYIR-LGQPATTLSGGEAQRIKLAKELSKRSTGRTLY 854
Query: 1202 LLDEATSALDAESERVVQDALERVMVNRTTVVV-AHRLTTIKNADII 1247
+LDE T+ L + + + + L+R++ TVVV H L IK AD I
Sbjct: 855 ILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLDVIKTADYI 901
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 61/245 (24%), Positives = 98/245 (40%), Gaps = 42/245 (17%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLV 456
SL G LVG +GSGKST+ +++ P G+V +G ++ I GL
Sbjct: 44 SLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG------EVSVIAISAGLS 97
Query: 457 SQEPILFATSLRENIAYG------KENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEH 510
Q T + ENI + K IE + +FI + K
Sbjct: 98 GQ-----LTGI-ENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVK--------- 142
Query: 511 GTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM----TSRTTV 566
+ S G + ++ + I NP IL++DEA S D + Q L KI ++T
Sbjct: 143 --KYSSGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCLDKIYEFKEQNKTIF 197
Query: 567 VVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVR-LQEGSKEAEDALA 624
V+H L +R IA + GK+ + G D+++ Y + ++ SK +
Sbjct: 198 FVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK----YEAFLNDFKKKSKAEQKEFR 253
Query: 625 TDADK 629
D+
Sbjct: 254 NKLDE 258
|
Length = 264 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 52/200 (26%), Positives = 86/200 (43%), Gaps = 49/200 (24%)
Query: 1049 YPTRPDVQIFRNLCLSIP-----------------SGKTVALVGESGSGKSTVI-ALIER 1090
+ D+ +RNL + G AL+G SG+GK+T++ L ER
Sbjct: 753 KESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAER 812
Query: 1091 FYDPDSGHVLLDNIEL---PKFKLSWLRQQMGLVSQEPV-LFNETIRTNI---AYGKQGG 1143
+ V+ L S+ R +G V Q+ + L T+R ++ AY +Q
Sbjct: 813 V----TTGVITGGDRLVNGRPLDSSFQRS-IGYVQQQDLHLPTSTVRESLRFSAYLRQPK 867
Query: 1144 ATE--------EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVL 1195
+ EE+I E + + A+ VG G L+ Q++R+ I ++
Sbjct: 868 SVSKSEKMEYVEEVIKLLEMES---YADAV-------VGVPGEGLNVEQRKRLTIGVELV 917
Query: 1196 KNPKILL-LDEATSALDAES 1214
PK+LL LDE TS LD+++
Sbjct: 918 AKPKLLLFLDEPTSGLDSQT 937
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-04
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 41/191 (21%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
+ S +P G ++G +G+GKST+ ++ PD+G + I G +K
Sbjct: 337 LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GETVK--------- 386
Query: 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLP----------K 501
+ V Q R+ + K +EI +++ K ++P K
Sbjct: 387 -LAYVDQS--------RDALDPNK--TVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFK 433
Query: 502 GLD--TMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKI 559
G D G QLSGG++ R+ +A+ + +LLLDE T+ LD E+ R +++AL++
Sbjct: 434 GSDQQKKVG----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF 489
Query: 560 MTSRTTVVVAH 570
VV++H
Sbjct: 490 AGC--AVVISH 498
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-04
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 1180 LSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
LSGG +Q++AIAR ++ PK+L+LDE T +D
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 5e-04
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Query: 1180 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAH--- 1236
LSGG+K R+ + +++ P +L++DE T+ +D ES + ALE T + V+H
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALE--KYEGTLIFVSHDRE 496
Query: 1237 ---RLTTIKNADIIAVVKNGVIAEQGSHD 1262
L T II + +GV+ G+++
Sbjct: 497 FVSSLAT----RIIEITPDGVVDFSGTYE 521
|
Length = 530 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 7e-04
Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 26/188 (13%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKS-TVIALIERFYDPDSGH 1098
+E R ++ P + ++ S+ G+ + + G G+G++ V AL + G+
Sbjct: 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN 317
Query: 1099 VLLD----NIELP----KFKLSWL---RQQMGLVSQEPVLFNETIRTNIAYGKQG---GA 1144
V ++ +I P + ++ + R++ G+V V N T+ ++ + A
Sbjct: 318 VFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAA 377
Query: 1145 TEEEII-AATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLL 1203
E +II +A + LP G +LSGG +Q+ +A+ +L NP++L+L
Sbjct: 378 AELQIIGSAIQRLKVKTASPFLPIG----------RLSGGNQQKAVLAKMLLTNPRVLIL 427
Query: 1204 DEATSALD 1211
DE T +D
Sbjct: 428 DEPTRGVD 435
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 7e-04
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 1147 EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEA 1206
E I A T + A + ++ L E V + SGG + RIA+ARA+ P +LLLDE
Sbjct: 313 ELIDAYTAEARAASILAGLSFTPEMQV-KATKTFSGGWRMRIALARALFIEPDLLLLDEP 371
Query: 1207 TSALDAESERVVQDALERVMVNRTTVVVAH 1236
T+ LD + ++ L + +T +VV+H
Sbjct: 372 TNHLDLHAVLWLETYL--LKWPKTFIVVSH 399
|
Length = 718 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 7e-04
Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 36/167 (21%)
Query: 403 GTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQE-PI 461
G LVG++G GKST+++L++ D G G QL W V+QE P
Sbjct: 27 GQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----NWQLAW-------VNQETPA 75
Query: 462 LFATSLRENIAYGKE-NATDQEIRTAIELANAAKFIDKLPKGLDTMAGE----------H 510
L +L I +E + ++ A E N I + LD + H
Sbjct: 76 LPQPALEYVIDGDREYRQLEAQLHDANE-RNDGHAIATIHGKLDAIDAWTIRSRAASLLH 134
Query: 511 G-----TQL-------SGGQKQRIAIARAILKNPKILLLDEATSALD 545
G QL SGG + R+ +A+A++ +LLLDE T+ LD
Sbjct: 135 GLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 1179 QLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
+LSGG +Q+ +A+ +L NPKIL+LDE T +D
Sbjct: 405 RLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
|
Length = 506 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Query: 1168 GYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
G+ T +G LSGG +Q++ I R +L P+IL+LDE T +D
Sbjct: 384 GHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGID 423
|
Length = 491 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 502 GLD--TMAGEHGTQLSGGQKQRIAIARAILKNPK--ILLLDEATSAL-DAESERIVQDAL 556
GL T++ T LSGG+ QRI +A I + +LDE + L +++R++ + L
Sbjct: 125 GLGYLTLSRSAPT-LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLI-ETL 182
Query: 557 VKIMTSRTTV-VVAHRLTTIRNADLI------AVVHQGKIVEKG 593
++ TV VV H TIR AD + A VH G+IV +G
Sbjct: 183 KRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 1179 QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVV--VAH 1236
+L+ G+ Q++ IA A+ P++L+ DE T+A++ ++ + L R+ N T + ++H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 1237 RLTTI-KNADIIAVVKNGVIAEQGSHDALM 1265
L + + AD I V+ G E L+
Sbjct: 218 DLQMLSQWADKINVLYCGQTVETAPSKELV 247
|
Length = 330 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 513 QLSGGQKQRIAIARAI---LKNPKIL-LLDEATSALDAESERIVQDALVKIMTSRTTVVV 568
QLSGG+K+ A+A + P+ L +LDE LD + + +A+++ + V+V
Sbjct: 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV 136
Query: 569 A-HRLTTIRNADLIAVVHQGKIVEKGTH 595
H AD ++H K++
Sbjct: 137 ITHLPELAELAD--KLIHIKKVITGVYK 162
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 27/189 (14%)
Query: 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119
N+ +P G+ V ++G +GSGKST+ LI P+ G V + K + + G
Sbjct: 42 NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDI------KGSAALIAISSG 95
Query: 1120 LVSQEPVLFNETIRTNIAYGKQGGATEEEIIAAT----EASNAHNFISALPHGYETNVGE 1175
L Q + N ++ G G T+E+I E ++ FI Y
Sbjct: 96 LNGQLTGIENIELK-----GLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTY------ 144
Query: 1176 RGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN-RTTVVV 1234
S G K R+ A +V NP IL++DEA S D + D + +T +
Sbjct: 145 -----SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFI 199
Query: 1235 AHRLTTIKN 1243
+H L+ +K+
Sbjct: 200 SHSLSQVKS 208
|
Length = 549 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 514 LSGGQKQRIAIARAILKNPKILLLDEATSALD 545
LSGG +Q++ I R +L P+IL+LDE T +D
Sbjct: 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGID 423
|
Length = 491 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.004
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
A+E+ ++ + P +F+NL L + +G+ +A++GE+G GK+T++ + +PDSG
Sbjct: 319 ALEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGT 375
Query: 1099 V 1099
V
Sbjct: 376 V 376
|
Length = 530 |
| >gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.004
Identities = 29/170 (17%), Positives = 52/170 (30%), Gaps = 35/170 (20%)
Query: 1064 SIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQ 1123
+V L G SG+GK++++ + +G P LR+
Sbjct: 20 RSGGPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFSQALRE------- 72
Query: 1124 EPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGG 1183
L + +R A + A + + L
Sbjct: 73 ---LLRQLLRELAAELLLLREALLAALGAELIEGLQDLVELLE----------------- 112
Query: 1184 QKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVV 1233
+ +A AR ++ L+LD+ D ES ++ L R+ VV
Sbjct: 113 --RLLARARPLV-----LVLDDLQ-WADEESLDLLAALLRRLERLPLLVV 154
|
This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1283 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-217 Score=1986.28 Aligned_cols=1215 Identities=57% Similarity=0.936 Sum_probs=1116.6
Q ss_pred chhHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 35 KVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQ 114 (1283)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1283)
..++.++|+|..+.++.+++++.+++++.++..|++.+++|+++|.+.........+.+..+++.+++++++.++..|++
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q 91 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQ 91 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999988654321222456677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000789 115 VSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARG 194 (1283)
Q Consensus 115 ~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 194 (1283)
..||.+.++|...++|.++++.++|++++|||.+ .+|++.+++++|++.|++.+++.+..+++.+.++++++++.|+..
T Consensus 92 ~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~ 170 (1228)
T KOG0055|consen 92 VSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYG 170 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987 779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 000789 195 WFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQ 274 (1283)
Q Consensus 195 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 274 (1283)
|+|+++++.+.|++++....+.+.+.+...+.+++++++.+.++|+++++|||.+|+.|+.+.+||.+.++..++...+.
T Consensus 171 W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~ 250 (1228)
T KOG0055|consen 171 WKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKK 250 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000789 275 GMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKR 354 (1283)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~ 354 (1283)
..+.++..+++.++.+..+++.+|+|+.++..+..++|.++..+.+++.+...+++..|.+..+..+.+|+.+|++.++.
T Consensus 251 g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~ 330 (1228)
T KOG0055|consen 251 GLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDR 330 (1228)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 000789 355 KPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434 (1283)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 434 (1283)
.|++++...++......+|+|+|+||+|+||.+++.++|+|+||+|++|+++||||||||||||+++||.|||+|++|+|
T Consensus 331 ~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V 410 (1228)
T KOG0055|consen 331 KPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEV 410 (1228)
T ss_pred CCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceE
Confidence 98887654333345567899999999999999998999999999999999999999999999999999999999999999
Q ss_pred EECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCC
Q 000789 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQL 514 (1283)
Q Consensus 435 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~L 514 (1283)
++||.|+++++.+|+|++||.|+|+|.||++||+|||+||+|+++.+++.+||+.+++++||..+|+||||.+||+|.+|
T Consensus 411 ~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qL 490 (1228)
T KOG0055|consen 411 LIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQL 490 (1228)
T ss_pred EEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecC
Q 000789 515 SGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGT 594 (1283)
Q Consensus 515 SgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~ 594 (1283)
||||||||||||||++||+||||||||||||+++|+.++++|+++++|||+|+|||||+++++||+|+||++|+|+|.|+
T Consensus 491 SGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~ 570 (1228)
T KOG0055|consen 491 SGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGT 570 (1228)
T ss_pred ChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhcCCCChhHHHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCccccccCCCC
Q 000789 595 HDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPG 674 (1283)
Q Consensus 595 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1283)
|+||++. +|.|.+|++.|......+. .+++.+..+ . ... .. +......+..+.+ ..... .
T Consensus 571 h~ELi~~-~G~Y~~lv~~Q~~~~~~~~-~~~~~~~~~----~--~~~--s~-~~s~~~~~~~~~~--~~~~~------~- 630 (1228)
T KOG0055|consen 571 HDELIAL-GGIYSSLVRLQELEKAAED-EEEEESLKE----E--RSR--SL-KSSSSSPSLSRGS--NRSNL------L- 630 (1228)
T ss_pred HHHHHhc-cchHHHHHHHHhhhhhhhc-cccccchhh----h--hhh--cc-ccccccccccCCc--ccccc------c-
Confidence 9999998 5999999999876553321 000000000 0 000 00 0000000000000 00000 0
Q ss_pred CCCccccccCCCCCCCCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhh
Q 000789 675 PINVFETEEGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPE-DKL 753 (1283)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 753 (1283)
....+. +...+.. .....+.++++++++.+|+|+++++|++++++.|+.+|++++.++..+..+..++ +..
T Consensus 631 ----~~~~~~-e~~~~~~---~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~ 702 (1228)
T KOG0055|consen 631 ----SVKPEG-EDPEEPV---SEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDEL 702 (1228)
T ss_pred ----cccccc-ccccccc---ccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHH
Confidence 000000 0000000 0111456789999999999999999999999999999999999999999988553 445
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHH
Q 000789 754 RKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSL 833 (1283)
Q Consensus 754 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~ 833 (1283)
......|.++|++++++.+++.+++.|++..++++++.++|..+|+++++++++|||+++|+ |.+.+|+.+|...++..
T Consensus 703 ~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~ 781 (1228)
T KOG0055|consen 703 KREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAA 781 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHH
Confidence 55556699999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000789 834 VGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVA 913 (1283)
Q Consensus 834 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIr 913 (1283)
+.+.+..+++.+.+++.+++++|+++|+++++++++.|++++..+.+.+++.....+.+..+.++.+.+.|++++++||+
T Consensus 782 v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~ 861 (1228)
T KOG0055|consen 782 VGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVA 861 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Q 000789 914 SFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGV 993 (1283)
Q Consensus 914 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 993 (1283)
+|+.|+++.+.|.+.++...+...+++++.++.+++++.++++.+++++|+|.+++.+|.+++.+++.++..+.+....+
T Consensus 862 al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~ 941 (1228)
T KOG0055|consen 862 ALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMAL 941 (1228)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEE
Q 000789 994 SQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVAL 1073 (1283)
Q Consensus 994 ~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaI 1073 (1283)
++...+.|++.++..|+.+++++++++|..+...+.+...+..+|+|+|+||+|+||++|+.+||+|+||+|++||++||
T Consensus 942 ~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvAL 1021 (1228)
T KOG0055|consen 942 GQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVAL 1021 (1228)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEE
Confidence 99999999999999999999999999997765544444456678999999999999999999999999999999999999
Q ss_pred EcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHH
Q 000789 1074 VGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAAT 1153 (1283)
Q Consensus 1074 VG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al 1153 (1283)
||||||||||++.||.|||||++|.|.|||+||+++++++||++|++|+|||.||++||||||.||.. +++++||.+|+
T Consensus 1022 VG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~-~vs~~eIi~Aa 1100 (1228)
T KOG0055|consen 1022 VGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE-EVSEEEIIEAA 1100 (1228)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC-CCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999943 49999999999
Q ss_pred HHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEE
Q 000789 1154 EASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVV 1233 (1283)
Q Consensus 1154 ~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~ 1233 (1283)
+.|++|+||.+||+||||.|||+|.+||||||||||||||++||||||||||||||||+++|+.||++|++.+.+||+|+
T Consensus 1101 k~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~Iv 1180 (1228)
T KOG0055|consen 1101 KLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIV 1180 (1228)
T ss_pred HHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCchHHhhcCEEEEEeCCEEEEecChHHHHhccCchhHHHHHHhhc
Q 000789 1234 VAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVS 1281 (1283)
Q Consensus 1234 IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~~~ 1281 (1283)
|||||+||++||.|+|+++|+|+|+|||+||+++ +|.|++|++.|..
T Consensus 1181 IAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~-~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1181 IAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAK-RGIYFRLVQLQSS 1227 (1228)
T ss_pred EecchhhhhcCCEEEEEECCEEEecccHHHHHhC-CCchHHHhhhccC
Confidence 9999999999999999999999999999999994 9999999999864
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-174 Score=1732.13 Aligned_cols=1225 Identities=30% Similarity=0.513 Sum_probs=1021.0
Q ss_pred cchhHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 34 QKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFL 113 (1283)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (1283)
++.++.++|+|..+.++.+++++++++++.+++.|++|++++.++|.+...+ .+..+++++++++++.+++.++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~------~~~~~~~~~~~~~i~~~~~~~~ 116 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE------NVNDIIFSLVLIGIFQFILSFI 116 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999998888888899999999999999999999999999764221 1222345566667778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 114 QVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALAR 193 (1283)
Q Consensus 114 ~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 193 (1283)
+.+++.+.++++..++|.++|++++++|++|||+. +.|++++++++|++.+++.+...+..++..+++++++++++|++
T Consensus 117 ~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~ 195 (1466)
T PTZ00265 117 SSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFK 195 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986 88999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 000789 194 GWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQ 273 (1283)
Q Consensus 194 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 273 (1283)
+|.|++++++++|+++++..++.+++++..++.++..++.++.++|.++|+++||+|+.|+.+.++|.+..+.+.+...+
T Consensus 196 sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k 275 (1466)
T PTZ00265 196 NARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILK 275 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 274 QGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEK--------GYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAA 345 (1283)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~--------~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~ 345 (1283)
...+.++..++..++.++++++++|+|++++..| .+++|.+++++++.+.....+..+.+.+..++.+.+|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~ 355 (1466)
T PTZ00265 276 ANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEAT 355 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888888889999999999999875 57899999888777776677778888899999999999
Q ss_pred HHHHHHHccCCCCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHc
Q 000789 346 YKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 346 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 425 (1283)
+|++++++.+++.++.. .+...+. .+.|+|+||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|
T Consensus 356 ~ri~~ii~~~~~~~~~~-~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~g 433 (1466)
T PTZ00265 356 NSLYEIINRKPLVENND-DGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIER 433 (1466)
T ss_pred HHHHHHHcCCCCCCCCC-CCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 99999999877654321 1111222 247999999999986544579999999999999999999999999999999999
Q ss_pred CCCCCCceEEE-CCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCC----------------------------
Q 000789 426 FYDPDAGEVLI-DGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKE---------------------------- 476 (1283)
Q Consensus 426 ~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~---------------------------- 476 (1283)
+|+|++|+|++ ||+++++++..++|++||||+|+|.||++||+|||.+|.+
T Consensus 434 l~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (1466)
T PTZ00265 434 LYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNS 513 (1466)
T ss_pred hccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccccc
Confidence 99999999999 5799999999999999999999999999999999999742
Q ss_pred -----------------------------CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000789 477 -----------------------------NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARA 527 (1283)
Q Consensus 477 -----------------------------~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARa 527 (1283)
+.++++++++|+.+++++|+.++|+||||.+|++|.+|||||||||+||||
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARA 593 (1466)
T PTZ00265 514 CRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARA 593 (1466)
T ss_pred ccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHH
Confidence 245688999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCC------------------
Q 000789 528 ILKNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRNADLIAVVHQG------------------ 587 (1283)
Q Consensus 528 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G------------------ 587 (1283)
|+++|+|||||||||+||+++++.+++.|+++. +++|+|+||||+++++.||+|++|++|
T Consensus 594 ll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~ 673 (1466)
T PTZ00265 594 IIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKD 673 (1466)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccc
Confidence 999999999999999999999999999999986 479999999999999999999999986
Q ss_pred -----------------------------EEeEecChhHHhcCCCChhHHHHHHhhcCchhhhhhhccccccCchhhhhh
Q 000789 588 -----------------------------KIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILD 638 (1283)
Q Consensus 588 -----------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1283)
+|+|+|+|+||+++.+|.|+.++..|............+.+..... ....
T Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~-~~~~ 752 (1466)
T PTZ00265 674 NKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKS-SAYK 752 (1466)
T ss_pred ccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccc-cccc
Confidence 5999999999998558999999987754321110000000000000 0000
Q ss_pred hhhcCCCCCCccccccccccCCCCCCccccccCCCCCCCccccccCCCCCCCCchhhH----hhhhhHHHHHHHHhhcCh
Q 000789 639 KAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQGGAERTPLMI----EKRQKLSMRRLAYLNKPE 714 (1283)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 714 (1283)
. ................... ........... .....+.... ........ .......+.++++..++.
T Consensus 753 ~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1466)
T PTZ00265 753 D--SERGYDPDEMNGNSKHENE---SASNKKSCKMS---DENASENNAG-GKLPFLRNLFKRKPKAPNNLRIVYREIFSY 823 (1466)
T ss_pred c--ccccccccccccccccccc---ccccccccccc---cccccchhcc-ccchhhhhccccccccchhHHHHHHHHHHH
Confidence 0 0000000000000000000 00000000000 0000000000 00000000 000111334445555566
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 715 FPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIR 794 (1283)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr 794 (1283)
++.++++++++++.+++.|+++++++.++..++.. .........|.+++++++++.+++.+++.++..++++++..++|
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR 902 (1466)
T PTZ00265 824 KKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDF-ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMK 902 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66688888888899999999999999998876642 22223355678888888899999999999999999999999999
Q ss_pred HHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000789 795 SLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLML 874 (1283)
Q Consensus 795 ~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~ 874 (1283)
.++|++++++|++|||++++++|++++|+++|++.++..+...+..++..++.++++++++++++|.++++++++++++.
T Consensus 903 ~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~ 982 (1466)
T PTZ00265 903 RRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFM 982 (1466)
T ss_pred HHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997778999999999999999999999999999999999999999999999999888765554443
Q ss_pred HHHHHHHHHHhHHHH--H-------------HHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHH
Q 000789 875 VQGYTQTKFMKGFSA--D-------------AKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRR 939 (1283)
Q Consensus 875 ~~~~~~~~~~~~~~~--~-------------~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1283)
.......+....... . .++...+....+.|++.|+++||+|+.|+++.++|.+..+...+...+.
T Consensus 983 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~ 1062 (1466)
T PTZ00265 983 RVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRK 1062 (1466)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 332222121111000 0 1233556688999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000789 940 GILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDS 1019 (1283)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~ 1019 (1283)
....+...++..++.++..++++|+|++++..|.+++|++++++.++.+...++..+...++++.++..+.+|++++++.
T Consensus 1063 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~ 1142 (1466)
T PTZ00265 1063 TLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIR 1142 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 88889999999999999999999999999999999999999988777666677888999999999999999999999987
Q ss_pred CCCCCCCCCcCCc---cCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC--
Q 000789 1020 KPKIDSSKDEGMT---LSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-- 1094 (1283)
Q Consensus 1020 ~~~~~~~~~~~~~---~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~-- 1094 (1283)
+++.+.....+.. ++...|.|+|+||+|+||++++.+||+|+||+|+|||++||||+||||||||+++|+|||+|
T Consensus 1143 ~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~ 1222 (1466)
T PTZ00265 1143 KSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKN 1222 (1466)
T ss_pred CCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcc
Confidence 6643221111111 12345789999999999977666899999999999999999999999999999999999999
Q ss_pred ----------------------------------------------------CcceEEECCccCCCCChHHHhcceEEEc
Q 000789 1095 ----------------------------------------------------DSGHVLLDNIELPKFKLSWLRQQMGLVS 1122 (1283)
Q Consensus 1095 ----------------------------------------------------~~G~I~idG~di~~~~~~~lR~~i~~V~ 1122 (1283)
++|+|+|||+|++++++++||++|+|||
T Consensus 1223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~ 1302 (1466)
T PTZ00265 1223 DHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVS 1302 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeC
Confidence 6999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000789 1123 QEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILL 1202 (1283)
Q Consensus 1123 Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILi 1202 (1283)
|||+||+|||||||.||. ++++|+|+++||+.|+++|||.+||+||||.|||+|.+|||||||||||||||+|+|+|||
T Consensus 1303 Qep~LF~gTIreNI~~g~-~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILL 1381 (1466)
T PTZ00265 1303 QEPMLFNMSIYENIKFGK-EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILL 1381 (1466)
T ss_pred CCCccccccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999994 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhhcCEEEEEeC----CEEE-EecChHHHHhccCchhHHH
Q 000789 1203 LDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKNADIIAVVKN----GVIA-EQGSHDALMKITDGAYASL 1275 (1283)
Q Consensus 1203 LDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~~D~I~vl~~----G~Iv-e~Gt~~eLl~~~~g~y~~L 1275 (1283)
|||||||||++||+.|+++|++.. +++|+|+||||++++++||+|+||++ |+++ |+|+|+||+++++|.|++|
T Consensus 1382 LDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l 1461 (1466)
T PTZ00265 1382 LDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKY 1461 (1466)
T ss_pred EeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHH
Confidence 999999999999999999999984 68999999999999999999999999 9954 9999999998448999999
Q ss_pred HHHh
Q 000789 1276 VALH 1279 (1283)
Q Consensus 1276 ~~~~ 1279 (1283)
|+.|
T Consensus 1462 ~~~~ 1465 (1466)
T PTZ00265 1462 VKLA 1465 (1466)
T ss_pred Hhhc
Confidence 9876
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-162 Score=1537.68 Aligned_cols=1137 Identities=22% Similarity=0.306 Sum_probs=875.5
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCCh
Q 000789 67 HPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLY----LKTILRQDI 142 (1283)
Q Consensus 67 ~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~----~~~ll~~~~ 142 (1283)
....|.++..+++.+...... ... ..++++..++..++..+....+.+...+++.++|..+ |+|.++++-
T Consensus 217 ~~~~P~lL~~li~~~~~~~~~--~~~----g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~ 290 (1381)
T KOG0054|consen 217 GFVGPLLLKKLILFFSEKRLP--LNN----GYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSN 290 (1381)
T ss_pred ccccHHHHHHHHHHhcCCCcc--cch----hHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCch
Confidence 555667889999987654211 111 1111111111112222222223445667777777765 455555554
Q ss_pred hhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHH
Q 000789 143 GFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFL----ALVLLACLPAIVIAGGSMALI 218 (1283)
Q Consensus 143 ~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l----~l~~l~~~p~~~~~~~~~~~~ 218 (1283)
..-... ++|+++|.|++|++++.++. .+++.+|....-+++..++-|.+ +++.++++.+++.+..+++++
T Consensus 291 ~~~~~~-t~G~ivNlms~D~~ri~~~~-----~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~ 364 (1381)
T KOG0054|consen 291 SARGET-TVGEIVNLMSVDAQRLSDAA-----CFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKK 364 (1381)
T ss_pred hhccCC-CcchhhhhhhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333 78999999999999999876 34555555444444444444432 444555555666677788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 219 MSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVW 298 (1283)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1283)
.++..++..+..+++...++|.++|||+||.|+||+.+.++..+.++++.+...+...+.++..........++.++ .
T Consensus 365 ~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~--t 442 (1381)
T KOG0054|consen 365 IAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVV--T 442 (1381)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 99999999999999999999999999999999999999999999999999988888888877665554444333332 3
Q ss_pred HHHHH-HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcccCccccEEE
Q 000789 299 YGSKL-IIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIEL 377 (1283)
Q Consensus 299 ~g~~~-v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 377 (1283)
++.+. ...+.+++...|+.+.++..+..|+..++..+..+.++.+|.+|+.+++..++..+... ...+..+.+..|++
T Consensus 443 F~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~-~~~~~~~~~~~i~i 521 (1381)
T KOG0054|consen 443 FVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSV-ERSPDEAGENAIEI 521 (1381)
T ss_pred HHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccc-ccCCCCCCCceEEE
Confidence 34443 45667888888888888888889999988899999999999999999998654322211 10122233457999
Q ss_pred EEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccEEEc
Q 000789 378 RDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVS 457 (1283)
Q Consensus 378 ~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 457 (1283)
+|.+|+|++....+.|+||||+|++|+.+|||||.|||||+|+.+|+|+++..+|++.++| .++|||
T Consensus 522 ~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------------siaYv~ 588 (1381)
T KOG0054|consen 522 KNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-------------SVAYVP 588 (1381)
T ss_pred eeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-------------eEEEec
Confidence 9999999864445699999999999999999999999999999999999999999999998 599999
Q ss_pred cCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCEEEE
Q 000789 458 QEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLL 537 (1283)
Q Consensus 458 Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illl 537 (1283)
|+||+|++||||||.||.| .++++++++.+.|++.++++.||.|+.|.|||+|.+|||||||||+||||+|+|+||++|
T Consensus 589 Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLL 667 (1381)
T KOG0054|consen 589 QQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLL 667 (1381)
T ss_pred cccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEE
Confidence 9999999999999999987 578899999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHH-HHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCChhHHHHHHhhcC
Q 000789 538 DEATSALDAESERIV-QDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGS 616 (1283)
Q Consensus 538 DE~ts~lD~~~~~~i-~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~ 616 (1283)
|||+||+|+++.++| .++|+.+.++||+|+|||.++.+++||+|++|++|+|++.|+|+||++. +..+.++.......
T Consensus 668 DDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~-~~~~~~l~~~~~~~ 746 (1381)
T KOG0054|consen 668 DDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKS-GGDFAELAHEEESE 746 (1381)
T ss_pred cCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhc-chhHHHHhhccchh
Confidence 999999999987655 5677777889999999999999999999999999999999999999976 67777773322111
Q ss_pred chhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCccccccCCCCCCCccccccCCCCCCCCchhhH
Q 000789 617 KEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQGGAERTPLMI 696 (1283)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1283)
.+.. . ..+..+. +...+... .+..... +.... ....++ ....+....++
T Consensus 747 ~~~~-~---~~~~~~~----------~~~~~~~~-~~~~~~~-----~~~~~----------~~~~~~-~~~~~~~~~ee 795 (1381)
T KOG0054|consen 747 QEEE-A---SEKDLES----------GESSRESE-SRSLESL-----SSEEE----------KSKDEK-EEEDKLVQEEE 795 (1381)
T ss_pred hccc-c---ccccccc----------cccccchh-hhhhhhh-----ccccc----------cccccc-chhhHHHHHHH
Confidence 1110 0 0000000 00000000 0000000 00000 000000 00000111122
Q ss_pred hhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hhh--hhhHHHHHHHHHHHHHHH
Q 000789 697 EKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPED--KLR--KDSRFWALIYLVLGIINL 772 (1283)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~l~~~~~ 772 (1283)
+..+++.+.-+..|.+...+++.....+ ...+........+..+..+|.... ... .+..++.++|.+++++..
T Consensus 796 ~~~G~v~~~vY~~Y~~a~~g~~~~~~~~---~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~ 872 (1381)
T KOG0054|consen 796 RETGKVSWSVYKKYIKAAGGFLLVLLIL---LLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASS 872 (1381)
T ss_pred HhcCEeeHHHHHHHHHhcccHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHH
Confidence 3445566666666555433332222111 111112222233344444554321 111 356789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 773 IAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGL 852 (1283)
Q Consensus 773 l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~ 852 (1283)
++..++.+.+...+.+++++||+.+++++++.||+|||. ||+|+|+|||++|++.+|..++..+..++..++.+++.+
T Consensus 873 ~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt--TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~ 950 (1381)
T KOG0054|consen 873 LLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT--TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGIL 950 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC--CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999995 999999999999999999999999999999999999998
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHhhhHHHHHhccHHHHHHHHHHH
Q 000789 853 IIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEE----ASQVANDAVGSIRTVASFCSEEKVMDLYEKK 928 (1283)
Q Consensus 853 ~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~ 928 (1283)
++..+..|+ ++++++|+.+++.+++.+|.+ .+|++++.++. ..+|++|++.|+.|||||+.+++|.+++...
T Consensus 951 ~vi~~~~P~---fli~~~pl~v~~~~~~~~Y~~-tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~ 1026 (1381)
T KOG0054|consen 951 VVISYVTPW---FLIAIIPLGVIYYFVQRYYLA-TSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDEL 1026 (1381)
T ss_pred HHhhHHhHH---HHHHHHHHHHHHHHHHHHHHH-HhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHH
Confidence 888877775 455666666666666655554 68888888764 4799999999999999999999999999999
Q ss_pred HhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 929 CEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLV--EHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKA 1006 (1283)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1283)
.|.+.+...-... ...++++. +-.+...+++..+...+ ..+..+.|..-..+.+.......++.+.....++++.
T Consensus 1027 ~D~~~~~~f~~~~-a~RWla~R--le~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~ 1103 (1381)
T KOG0054|consen 1027 IDENSRAFFLSIS-ANRWLAVR--LELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENN 1103 (1381)
T ss_pred hhhhHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998886543322 22333332 22222222222222222 2222667777777788888888999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCcC--CccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHH
Q 000789 1007 KDSAASIFEILDSKPKIDSSKDEG--MTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTV 1084 (1283)
Q Consensus 1007 ~~a~~ri~~~~~~~~~~~~~~~~~--~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL 1084 (1283)
+.++||+.+|.+.++|.+...+.. ++..+.+|.|+|+|++.+|.+. .++|||||||+|+||||||||||||||||||
T Consensus 1104 m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL 1182 (1381)
T KOG0054|consen 1104 MVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSL 1182 (1381)
T ss_pred chhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHH
Confidence 999999999999776622222122 2223468999999999999865 5789999999999999999999999999999
Q ss_pred HHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHh
Q 000789 1085 IALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISA 1164 (1283)
Q Consensus 1085 ~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~ 1164 (1283)
+++|+|+.+|.+|+|.|||+||+++++++||+++++|||||+||+||+|+||++. ++++|++||+|+|+|+++++|.+
T Consensus 1183 ~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf--~e~sD~~IW~ALe~~~Lk~~v~~ 1260 (1381)
T KOG0054|consen 1183 ILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF--DEYSDDEIWEALERCQLKDVVSS 1260 (1381)
T ss_pred HHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc--cccCHHHHHHHHHHhChHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999874 57999999999999999999999
Q ss_pred CCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhc
Q 000789 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNA 1244 (1283)
Q Consensus 1165 lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~ 1244 (1283)
+|+|||++|.|+|.|||.||||++||||||||++|||+||||||++|++|+..||++|++.|++||||+||||++||.||
T Consensus 1261 ~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~ 1340 (1381)
T KOG0054|consen 1261 LPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDS 1340 (1381)
T ss_pred CCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCEEEEecChHHHHhccCchhHHHHHHh
Q 000789 1245 DIIAVVKNGVIAEQGSHDALMKITDGAYASLVALH 1279 (1283)
Q Consensus 1245 D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~ 1279 (1283)
|||+|||+|+|+|+|+|++|++++++.|++++.+.
T Consensus 1341 DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~ 1375 (1381)
T KOG0054|consen 1341 DRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEA 1375 (1381)
T ss_pred CeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHH
Confidence 99999999999999999999998899998776553
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-157 Score=1579.94 Aligned_cols=1157 Identities=19% Similarity=0.262 Sum_probs=850.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 53 MIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGL 132 (1283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~ 132 (1283)
+++++++.++..++....|++++.+++.+...+.. . ..... ++.+++..++..++..-..+...+.+.++...++..
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~-~-~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~ 379 (1622)
T PLN03130 303 FWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA-W-IGYIY-AFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAA 379 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-h-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666777777888999999987543211 1 11111 111111111111111101111345677777788889
Q ss_pred HHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000789 133 YLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAG 212 (1283)
Q Consensus 133 ~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~ 212 (1283)
+|+|+++++..++++. ++|++++++++|++.+++++. .+..++...+.+++++++++..-...+++.++++.+++.+.
T Consensus 380 i~~k~L~l~~~~~~~~-~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~ 457 (1622)
T PLN03130 380 VFRKSLRLTHEGRKKF-TSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQ 457 (1622)
T ss_pred HHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876 899999999999999999874 45555555555555444443321112222222233344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 213 GSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGT 292 (1283)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1283)
.++.+++++..++.++..+++.+.+.|.++|+++||+|++|+.+.+++.+.++++.+...+.....++...+..... .
T Consensus 458 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~ 535 (1622)
T PLN03130 458 TFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIP--V 535 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 56777788888888889999999999999999999999999999999999888877776666655554433322221 1
Q ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcccCcc
Q 000789 293 YGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIE 372 (1283)
Q Consensus 293 ~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 372 (1283)
.+.++++|++.+..|.+|+|.+++++.++..+..|+..+...+..+.++.++++|+.++++.++..+... .......
T Consensus 536 ~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~---~~~~~~~ 612 (1622)
T PLN03130 536 LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN---PPLEPGL 612 (1622)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC---CcccCCC
Confidence 3445667888888999999999999888888889999988889999999999999999997654322111 0111123
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC-ceEEECCcccCCCCHHHHhc
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA-GEVLIDGIDIKKLQLKWIRE 451 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~-G~i~~~g~~~~~~~~~~~r~ 451 (1283)
+.|+++|++|+|++++++++|+|+||+|++|++++||||||||||||+++|+|+++|++ |+|.+ |+
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~ 679 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RG 679 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cC
Confidence 47999999999985444679999999999999999999999999999999999999999 99986 45
Q ss_pred ccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 452 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
+|+||+|+||+|++||||||+||.| .++++++++++.|+++++++.||+|++|.+||+|.+|||||||||+||||+|++
T Consensus 680 ~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~ 758 (1622)
T PLN03130 680 TVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSN 758 (1622)
T ss_pred eEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999987 578999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHH-HHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCChhHHHH
Q 000789 532 PKILLLDEATSALDAESERIVQ-DALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~-~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 610 (1283)
|+||||||||||||+++++++. +++....+++|+|+||||++.++.||+|++|++|+|+++|+|+||+++ ++.|.+++
T Consensus 759 ~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~-~~~~~~l~ 837 (1622)
T PLN03130 759 SDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN-GPLFQKLM 837 (1622)
T ss_pred CCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc-chhHHHHH
Confidence 9999999999999999998775 567777788999999999999999999999999999999999999976 77888887
Q ss_pred HHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCccccccCCCCCCCccccccCCCCCCC
Q 000789 611 RLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQGGAE 690 (1283)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1283)
..+...++..+.. ..+...+. .. ....... ......... . ....+. ....
T Consensus 838 ~~~~~~~~~~~~~--~~~~~~~~-~~------~~~~~~~--~~~~~~~~~--------~---------~~~~~~--~~~~ 887 (1622)
T PLN03130 838 ENAGKMEEYVEEN--GEEEDDQT-SS------KPVANGN--ANNLKKDSS--------S---------KKKSKE--GKSV 887 (1622)
T ss_pred Hhccccccccccc--cccccccc-cc------ccccccc--ccccccccc--------c---------cccccc--cchh
Confidence 6543211110000 00000000 00 0000000 000000000 0 000000 0000
Q ss_pred CchhhHhhhhhHHHHHHHHhhcChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhhhHHHHHHHHHH
Q 000789 691 RTPLMIEKRQKLSMRRLAYLNKPEF--PVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPE-DKLRKDSRFWALIYLVL 767 (1283)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l 767 (1283)
....+.+..+.+.+..+.+|.+... +.+.+.+++..+..++. .....+...|... ........+|.++|+++
T Consensus 888 ~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l 962 (1622)
T PLN03130 888 LIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFR-----VSSSTWLSEWTDQGTPKTHGPLFYNLIYALL 962 (1622)
T ss_pred hhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhccccCCCchhHHHHHHHHH
Confidence 0011122233344444444433311 11111111111111111 1122222223211 11122345678888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000789 768 GIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIAT 847 (1283)
Q Consensus 768 ~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~ 847 (1283)
+++..++.+++.+++...+.+++.++|.++|++++++|++|||+ +++|+++||+++|++.++..++..+..++..++.
T Consensus 963 ~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~--~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~ 1040 (1622)
T PLN03130 963 SFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQ 1040 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999995 8999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHhccHHHHHH
Q 000789 848 IAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLM----YEEASQVANDAVGSIRTVASFCSEEKVMD 923 (1283)
Q Consensus 848 ~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~e~l~gi~tIra~~~~~~~~~ 923 (1283)
+++.+++++..+|... ++++|+.+++...+..+ .+..++.++. .+...+++.|++.|++|||+|+.++++.+
T Consensus 1041 ~i~~~i~i~~~~~~~~---~~~~pl~~~~~~~~~~~-~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~ 1116 (1622)
T PLN03130 1041 LLSTFVLIGIVSTISL---WAIMPLLVLFYGAYLYY-QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAE 1116 (1622)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHH
Confidence 8888887777776433 23334433333222222 2333444433 34567899999999999999999998888
Q ss_pred HHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cC-----HHHHHHHHHHHHHHHHHHHHHH
Q 000789 924 LYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGK-AT-----FGQVFKVFFALTISALGVSQTS 997 (1283)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~-~~-----~~~~~~~~~~~~~~~~~~~~~~ 997 (1283)
.+.+..+...+......... .+.++. +..+...++++.+...+..+. .. .+.+..++.+.......+..+.
T Consensus 1117 ~~~~~~~~~~~~~~~~~~~~-~wl~~~--l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~ 1193 (1622)
T PLN03130 1117 INGRSMDNNIRFTLVNMSSN-RWLAIR--LETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVL 1193 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 87777766554433222111 111111 111122222223333333321 11 1222222333444555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCcc--CCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEc
Q 000789 998 AMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTL--SSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVG 1075 (1283)
Q Consensus 998 ~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~--~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG 1075 (1283)
.....++..+.+++|+.++++.+++.+...+...++ .+..|.|+|+||+|+|+++ .++||+|+||+|+|||+|||||
T Consensus 1194 ~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVG 1272 (1622)
T PLN03130 1194 RLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVG 1272 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEEC
Confidence 777888999999999999998766543211111111 1346789999999999743 3579999999999999999999
Q ss_pred CCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHH
Q 000789 1076 ESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEA 1155 (1283)
Q Consensus 1076 ~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~ 1155 (1283)
|||||||||+++|+|+|+|++|+|+|||+|++++++++||++|++|||||+||+|||||||+++. +++|+|+|+||++
T Consensus 1273 rSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~--~~tdeei~~Al~~ 1350 (1622)
T PLN03130 1273 RTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN--EHNDADLWESLER 1350 (1622)
T ss_pred CCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC--CCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999873 6899999999999
Q ss_pred hChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEe
Q 000789 1156 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVA 1235 (1283)
Q Consensus 1156 a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~Ia 1235 (1283)
+++++||+++|+||||+|||+|.+|||||||||||||||+++|+|||||||||+||++||+.|+++|++.+++||+|+||
T Consensus 1351 a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IA 1430 (1622)
T PLN03130 1351 AHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 1430 (1622)
T ss_pred cCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHhhcCEEEEEeCCEEEEecChHHHHhccCchhHHHHHHhhc
Q 000789 1236 HRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVS 1281 (1283)
Q Consensus 1236 Hrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~~~ 1281 (1283)
||++|+++||||+||++|+|+|+|+|+||+++++|.|++|++.+..
T Consensus 1431 HRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1431 HRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGA 1476 (1622)
T ss_pred CChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcCh
Confidence 9999999999999999999999999999999767999999987643
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-156 Score=1574.93 Aligned_cols=1153 Identities=19% Similarity=0.259 Sum_probs=854.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 54 IVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLY 133 (1283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~ 133 (1283)
+.+.++.++..++....|++++.+++.+...+.. . .. ..++..+++..++..++.....+...+.+.++...++..+
T Consensus 304 ~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~-~-~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i 380 (1495)
T PLN03232 304 WLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPA-W-VG-YVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAI 380 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-c-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666777777888999999987543211 1 11 1111111111122222221112223566777777888899
Q ss_pred HHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHH
Q 000789 134 LKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACL---PAIVI 210 (1283)
Q Consensus 134 ~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~---p~~~~ 210 (1283)
|+|+++++..++++. ++|++++++++|++.+++.+ ..+..++...+.++++++++ .+.+++..++.+ .+++.
T Consensus 381 ~~k~l~l~~~~~~~~-~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l---~~~lg~~~l~~~~v~~l~~p 455 (1495)
T PLN03232 381 FHKSLRLTHEARKNF-ASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLL---YQQLGVASLFGSLILFLLIP 455 (1495)
T ss_pred HHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHH
Confidence 999999999999876 89999999999999999986 34444444444444333332 223333322222 22223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 211 AGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVI 290 (1283)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1283)
+..++.++.++..++.++..+++.+.+.|.++||++||+|++|+.+.+++++.++++.+...+.....++...+.....
T Consensus 456 l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~- 534 (1495)
T PLN03232 456 LQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIP- 534 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4556778888888888999999999999999999999999999999999999988888877776666555433222211
Q ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcccC
Q 000789 291 GTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEK 370 (1283)
Q Consensus 291 ~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~ 370 (1283)
..+.++++|++++.+|.+|+|.+++++.++.....|+..+...+..+.++.++++|+.++++.+++.+... .....
T Consensus 535 -~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~---~~~~~ 610 (1495)
T PLN03232 535 -VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN---PPLQP 610 (1495)
T ss_pred -HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc---CCcCC
Confidence 22334677889899999999999999988888889999988889999999999999999998655422111 11111
Q ss_pred ccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHh
Q 000789 371 IEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIR 450 (1283)
Q Consensus 371 ~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r 450 (1283)
..+.|+++|++|+|++++++++|+|+||+|++||+++||||||||||||+++|+|+|+|++|.+. .+|
T Consensus 611 ~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~ 678 (1495)
T PLN03232 611 GAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIR 678 (1495)
T ss_pred CCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------Eec
Confidence 23479999999999854446799999999999999999999999999999999999999998763 256
Q ss_pred cccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhc
Q 000789 451 EKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILK 530 (1283)
Q Consensus 451 ~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~ 530 (1283)
++|+||+|+||+|++||||||+||.+ .++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||+||||+++
T Consensus 679 ~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~ 757 (1495)
T PLN03232 679 GSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS 757 (1495)
T ss_pred CcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc
Confidence 79999999999999999999999986 68899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCChhHHH
Q 000789 531 NPKILLLDEATSALDAESERIVQD-ALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQL 609 (1283)
Q Consensus 531 ~~~illlDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 609 (1283)
+|+||||||||||||+++++++.+ ++....+++|+|+||||++.++.||+|++|++|+|+++|+|+||+++ ++.|.++
T Consensus 758 ~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~-~~~~~~l 836 (1495)
T PLN03232 758 NSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-GSLFKKL 836 (1495)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc-chhHHHH
Confidence 999999999999999999997755 56666788999999999999999999999999999999999999986 7888888
Q ss_pred HHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCccccccCCCCCCCccccccCCCCCC
Q 000789 610 VRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQGGA 689 (1283)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1283)
+..+...++..+. ..+ .+. .. ...... . ... . .... .. ... ++. ...
T Consensus 837 ~~~~~~~~~~~~~---~~~-~~~-~~--------~~~~~~--~--~~~--~------~~~~--~~----~~~-~~~-~~~ 883 (1495)
T PLN03232 837 MENAGKMDATQEV---NTN-DEN-IL--------KLGPTV--T--IDV--S------ERNL--GS----TKQ-GKR-GRS 883 (1495)
T ss_pred HHhcccccccccc---ccc-ccc-cc--------cccccc--c--ccc--c------cccc--cc----ccc-ccc-chh
Confidence 7654321111000 000 000 00 000000 0 000 0 0000 00 000 000 000
Q ss_pred CCchhhHhhhhhHHHHHHHHhhcChhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh-hhhhHHHHHHHHHH
Q 000789 690 ERTPLMIEKRQKLSMRRLAYLNKPEFPVLL-IGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKL-RKDSRFWALIYLVL 767 (1283)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 767 (1283)
.....+.+..+.+.++.+.+|.+...+... ..++++.+. ..... .....+...|...... .....+|+.+|+++
T Consensus 884 ~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l 959 (1495)
T PLN03232 884 VLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLT---TEVLR-VSSSTWLSIWTDQSTPKSYSPGFYIVVYALL 959 (1495)
T ss_pred hhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHhcccCCCCCCcchHHHHHHHH
Confidence 000111222334455555555544222111 111111111 11111 1222222333321111 12345788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000789 768 GIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIAT 847 (1283)
Q Consensus 768 ~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~ 847 (1283)
+++..++.+++.+++...+.+++.++|++++++++++|++||++ +++|++++|+++|++.++..++..+..++..++.
T Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~--~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~ 1037 (1495)
T PLN03232 960 GFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT--NPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQ 1037 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc--CCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999995 8999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHH
Q 000789 848 IAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFM---KGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDL 924 (1283)
Q Consensus 848 ~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~ 924 (1283)
+++.+++++..++...+ +++|+.+++...+..+. +...+......+...+++.|++.|++|||+|+.++++.++
T Consensus 1038 ~i~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~ 1114 (1495)
T PLN03232 1038 LLSTFALIGTVSTISLW---AIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKI 1114 (1495)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHH
Confidence 87777777666653322 23344333322222221 2222223334445678999999999999999999998888
Q ss_pred HHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc----CHHH-HHHHHHHHHHHHHHHHHHHH
Q 000789 925 YEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVE-HGKA----TFGQ-VFKVFFALTISALGVSQTSA 998 (1283)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~g~~----~~~~-~~~~~~~~~~~~~~~~~~~~ 998 (1283)
+.+..+...+......... .+..+. +..+...++++.+...+. .+.+ .+.. +..++.+......++..+..
T Consensus 1115 ~~~~~~~~~~~~~~~~~~~-~wl~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~ 1191 (1495)
T PLN03232 1115 NGKSMDNNIRFTLANTSSN-RWLTIR--LETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLR 1191 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777766655433222111 111111 111222222233333333 2332 1122 22234444556667888888
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCcc--CCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcC
Q 000789 999 MAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTL--SSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGE 1076 (1283)
Q Consensus 999 ~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~--~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~ 1076 (1283)
.+.+++.++.+++|+.++++.+++.+.......++ .+..|.|+|+||+|+|+++ .++||+|+||+|+|||+||||||
T Consensus 1192 ~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~ 1270 (1495)
T PLN03232 1192 QASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGR 1270 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECC
Confidence 99999999999999999998776543211111111 1345789999999999643 35799999999999999999999
Q ss_pred CCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHh
Q 000789 1077 SGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEAS 1156 (1283)
Q Consensus 1077 SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a 1156 (1283)
||||||||+++|+|+|+|++|+|+|||+|++++++++||++|++|||||+||+|||||||+++. +++|+|+++|++.+
T Consensus 1271 SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~--~~sdeei~~al~~a 1348 (1495)
T PLN03232 1271 TGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS--EHNDADLWEALERA 1348 (1495)
T ss_pred CCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--CCCHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999873 68999999999999
Q ss_pred ChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEec
Q 000789 1157 NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAH 1236 (1283)
Q Consensus 1157 ~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaH 1236 (1283)
+++|+|+++|+||||+|||+|.+|||||||||||||||+++|+|||||||||+||++||+.|+++|++.+++||+|+|||
T Consensus 1349 ~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAH 1428 (1495)
T PLN03232 1349 HIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAH 1428 (1495)
T ss_pred CCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHhhcCEEEEEeCCEEEEecChHHHHhccCchhHHHHHHhhc
Q 000789 1237 RLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVS 1281 (1283)
Q Consensus 1237 rl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~~~ 1281 (1283)
|++|+++||||+||++|+|+|+|+|+||+++++|.|++|++.+..
T Consensus 1429 Rl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1429 RLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred CHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 999999999999999999999999999999756799999987754
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-151 Score=1525.89 Aligned_cols=1186 Identities=19% Similarity=0.236 Sum_probs=870.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 54 IVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLY 133 (1283)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~ 133 (1283)
+.+++..++..++....|++++.++|.+........ .. ..++..++++.++.+++.....+...+.+.++...++..+
T Consensus 320 l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i 397 (1522)
T TIGR00957 320 LMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDW-QG-YFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAV 397 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666667778899999997643321111 11 1112222222223333333333445667888888999999
Q ss_pred HHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000789 134 LKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGG 213 (1283)
Q Consensus 134 ~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~ 213 (1283)
|+|+++++..++++. ++|+++|++++|++++.+.. ..+..+...++.+++++++++..-...+++.++++++++.+..
T Consensus 398 y~K~L~l~~~~~~~~-~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~ 475 (1522)
T TIGR00957 398 YRKALVITNSARKSS-TVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNA 475 (1522)
T ss_pred HHHHHhCChhhcCCC-CHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999876 89999999999999998855 3344444444444444443332222233444555566666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 214 SMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTY 293 (1283)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1283)
++.+++++..++.++..+++.+.+.|.++||++||+|++|+.+.+++++.++++.+...+......+......... ..
T Consensus 476 ~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~ 553 (1522)
T TIGR00957 476 VMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTP--FL 553 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 7888888889999999999999999999999999999999999999999988887776665555444332221111 11
Q ss_pred HHHHHHHHHHHHh--cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcccCc
Q 000789 294 GLAVWYGSKLIIE--KGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKI 371 (1283)
Q Consensus 294 ~~~~~~g~~~v~~--~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 371 (1283)
+.++.++.+.+.. +.++.+.+++.+.++.....|+..+...+..+.++.++.+|+.++++.+++.+.........+..
T Consensus 554 ~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~ 633 (1522)
T TIGR00957 554 VALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGE 633 (1522)
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCC
Confidence 2222345555553 56888988888877777788999999999999999999999999998654322110000000111
Q ss_pred cccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhc
Q 000789 372 EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451 (1283)
Q Consensus 372 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 451 (1283)
.+.|+++|++|+|++. +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 634 ~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 699 (1522)
T TIGR00957 634 GNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------- 699 (1522)
T ss_pred CCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------
Confidence 2379999999999743 34699999999999999999999999999999999999999999999997
Q ss_pred ccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 452 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
+|+||+|+||+|++||+|||.+|.+ .+++++.++++.+++.+++..+|+|++|.+|++|.+|||||||||+||||++++
T Consensus 700 ~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~ 778 (1522)
T TIGR00957 700 SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN 778 (1522)
T ss_pred EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999976 456778888999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH---HcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCChhHH
Q 000789 532 PKILLLDEATSALDAESERIVQDALVK---IMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~---~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~ 608 (1283)
|+|+|||||||+||+++++.+.+.+.+ +.+++|+|+|||+++.+..||+|++|++|+|+++|+|++++++ ++.|.+
T Consensus 779 ~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~~~~ 857 (1522)
T TIGR00957 779 ADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR-DGAFAE 857 (1522)
T ss_pred CCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc-chhHHH
Confidence 999999999999999999999998864 4568999999999999999999999999999999999999976 677888
Q ss_pred HHHHhhcCchhhhhhhc--cccccCchhhhh-hhhhcCCCCCCccccccccccCCCCCCccccccCCCCCCCccccccCC
Q 000789 609 LVRLQEGSKEAEDALAT--DADKLDSSFDIL-DKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGD 685 (1283)
Q Consensus 609 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1283)
+...+......+..... .....+...... +...................... . . ..... ........+..+..
T Consensus 858 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~-~~~~~~~~~~~~~~ 933 (1522)
T TIGR00957 858 FLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSS-D-S-GDQSR-HHGSSAELQKAEAK 933 (1522)
T ss_pred HHHhhccccccccccccccccccccccccccccccccccccccchhhhhcccccc-c-c-ccccc-cccccccccccccc
Confidence 77644321111000000 000000000000 00000000000000000000000 0 0 00000 00000000000000
Q ss_pred CCCCCCchhhHhhhhhHHHHHHHHhhcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch---hhhhhhHHHH
Q 000789 686 QGGAERTPLMIEKRQKLSMRRLAYLNKPE-FPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPED---KLRKDSRFWA 761 (1283)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 761 (1283)
.........+.+..+.+.++.+.+|.+.. +...++.+++..+..++... ...+...|.... .......+|.
T Consensus 934 ~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~l~~w~~~~~~~~~~~~~~~~~ 1008 (1522)
T TIGR00957 934 EETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALA-----SNYWLSLWTDDPMVNGTQNNTSLRL 1008 (1522)
T ss_pred cchhhhHHHHHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhccccccCCCCCcchHH
Confidence 00000001111222333444444444322 22211111111111111111 122222232111 0112234567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHH
Q 000789 762 LIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALV 841 (1283)
Q Consensus 762 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~ 841 (1283)
.+|++++++..++.++..+++...+.+++.++|++++++++++|++|||+ +++|+++||+++|++.++..++..+..+
T Consensus 1009 ~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnR~s~Di~~id~~l~~~~~~~ 1086 (1522)
T TIGR00957 1009 SVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER--TPSGNLVNRFSKELDTVDSMIPPVIKMF 1086 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc--CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899888888888899999999999999999999999999999995 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHH
Q 000789 842 VQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKV 921 (1283)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~ 921 (1283)
+..++.+++.++++++.+|+++++++++++++.+...++.+..+...+......+...+++.|++.|++|||+|+.++++
T Consensus 1087 ~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f 1166 (1522)
T TIGR00957 1087 MGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERF 1166 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHH
Confidence 99999998888888888887655554444443333322222223323333344456689999999999999999999999
Q ss_pred HHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 922 MDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLV-EHGKATFGQVFKVFFALTISALGVSQTSAMA 1000 (1283)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1000 (1283)
.+++.+..+...+..........+......++ ...++++++...+ ..|.++.|.+..++.+......++..+...+
T Consensus 1167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~ 1243 (1522)
T TIGR00957 1167 IHQSDLKVDENQKAYYPSIVANRWLAVRLECV---GNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMS 1243 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888776554433332222222222 2223334444444 3678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCcCCcc--CCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCC
Q 000789 1001 PDTTKAKDSAASIFEILDSKPKIDSSKDEGMTL--SSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESG 1078 (1283)
Q Consensus 1001 ~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~--~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SG 1078 (1283)
.+++.++.+++|+.++.+.+++.+...+...++ .+..|.|+|+||+|+|+++ .++||+||||+|+|||+||||||||
T Consensus 1244 ~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTG 1322 (1522)
T TIGR00957 1244 SEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTG 1322 (1522)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCC
Confidence 999999999999999997766543111111111 1356889999999999854 3479999999999999999999999
Q ss_pred CCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhCh
Q 000789 1079 SGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNA 1158 (1283)
Q Consensus 1079 SGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l 1158 (1283)
||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||++. ++++|+|+|+|++.+++
T Consensus 1323 sGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~--~~~sdeei~~al~~a~l 1400 (1522)
T TIGR00957 1323 AGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF--SQYSDEEVWWALELAHL 1400 (1522)
T ss_pred CCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc--cCCCHHHHHHHHHHcCc
Confidence 9999999999999999999999999999999999999999999999999999999999854 26999999999999999
Q ss_pred HHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCc
Q 000789 1159 HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRL 1238 (1283)
Q Consensus 1159 ~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl 1238 (1283)
+++|.++|+||||+|||+|.+|||||||||||||||+++|+|||||||||+||++||+.|+++|++.+++||+|+||||+
T Consensus 1401 ~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl 1480 (1522)
T TIGR00957 1401 KTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRL 1480 (1522)
T ss_pred HHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCEEEEEeCCEEEEecChHHHHhccCchhHHHHHHh
Q 000789 1239 TTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALH 1279 (1283)
Q Consensus 1239 ~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~ 1279 (1283)
+++.+||||+||++|+|+|+|+|+||+++ +|.|++|+++.
T Consensus 1481 ~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1481 NTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHc
Confidence 99999999999999999999999999997 89999999874
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-145 Score=1460.02 Aligned_cols=1169 Identities=17% Similarity=0.216 Sum_probs=868.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 53 MIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGL 132 (1283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~ 132 (1283)
++..++..++..++....|++++.+++.+...+.. + .....+++.+++..++..++.....+...+.+.++...++..
T Consensus 246 ~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~-~-~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~ 323 (1560)
T PTZ00243 246 VWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNAT-W-GRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNAL 323 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777888899999877433211 1 111111222222333344444444455566777777788888
Q ss_pred HHHHHHhCChhhHhc-cCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000789 133 YLKTILRQDIGFFDT-ETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIA 211 (1283)
Q Consensus 133 ~~~~ll~~~~~~f~~-~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~ 211 (1283)
+|+|+++++...+.+ ..++|+++|++++|++.+.+++.. +..++...+.++++++++..+..+.+++.++++++++.+
T Consensus 324 if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl 402 (1560)
T PTZ00243 324 IFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPL 402 (1560)
T ss_pred HHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999877741 127899999999999999999844 455666777777767766666555777777777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 212 GGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIG 291 (1283)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1283)
..++.++..+..++..+..+++.+.+.|.++|||+||.++||+.+.+++.+.++++.+...+......+...+......+
T Consensus 403 ~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l 482 (1560)
T PTZ00243 403 NGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTL 482 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999988888777766666554443333322
Q ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC----CC-C----
Q 000789 292 TYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKID----PY-D---- 362 (1283)
Q Consensus 292 ~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~----~~-~---- 362 (1283)
.. ++.++.+.+..+.+|++.+++++.++..+..|+..+...+..+.++.+|++||.++|+.++... +. .
T Consensus 483 ~~--~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~ 560 (1560)
T PTZ00243 483 MI--AVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWRE 560 (1560)
T ss_pred HH--HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhccc
Confidence 22 2245667778889999999999999888889999999999999999999999999997543100 00 0
Q ss_pred -----CC-C---------------C---------------------------cccCccccEEEEEEEEECCCC-------
Q 000789 363 -----TS-G---------------I---------------------------TLEKIEGEIELRDVYFRYPAR------- 387 (1283)
Q Consensus 363 -----~~-~---------------~---------------------------~~~~~~~~i~~~~v~f~y~~~------- 387 (1283)
.. . . ......+.+.++|++|+++..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1560)
T PTZ00243 561 QREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVE 640 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccc
Confidence 00 0 0 000011357788887765310
Q ss_pred ------------------------------CCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEC
Q 000789 388 ------------------------------PEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLID 437 (1283)
Q Consensus 388 ------------------------------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~ 437 (1283)
.++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~ 720 (1560)
T PTZ00243 641 GGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE 720 (1560)
T ss_pred ccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence 12458999999999999999999999999999999999999999999874
Q ss_pred CcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 000789 438 GIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGG 517 (1283)
Q Consensus 438 g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 517 (1283)
++||||+|+|++|++||+|||.++.+ .+.+++.++++.++++++++.+|+|++|.+|++|.+||||
T Consensus 721 -------------~~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGG 786 (1560)
T PTZ00243 721 -------------RSIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGG 786 (1560)
T ss_pred -------------CeEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHH
Confidence 37999999999999999999999865 3456678888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChh
Q 000789 518 QKQRIAIARAILKNPKILLLDEATSALDAESERIVQDA-LVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHD 596 (1283)
Q Consensus 518 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 596 (1283)
|||||+|||||+.+|+|||||||||+||+++++.+.+. +....+++|+|+|||+++.+..||+|++|++|+++++|+++
T Consensus 787 QkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~ 866 (1560)
T PTZ00243 787 QKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSA 866 (1560)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999998877654 44455689999999999999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCccccccCCCCCC
Q 000789 597 ELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPI 676 (1283)
Q Consensus 597 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1283)
++++. +.|.++........+..+. ....+... .+. ... .... ...... ....... .
T Consensus 867 ~l~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~------~~~-~~~~----~~~~~~--~~~~~~~----~-- 922 (1560)
T PTZ00243 867 DFMRT--SLYATLAAELKENKDSKEG-DADAEVAE--VDA------APG-GAVD----HEPPVA--KQEGNAE----G-- 922 (1560)
T ss_pred HHHhC--hHHHHHHHhhccccccccc-cccccccc--ccc------ccc-cccc----cccccc--ccccccc----c--
Confidence 99864 4576665432211110000 00000000 000 000 0000 000000 0000000 0
Q ss_pred CccccccCCCCCCCCchhhHhhhhhHHHHHHHHhhcChhHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCchhhh
Q 000789 677 NVFETEEGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLL-IGSIAA-GIHGVIFPIFGLLLSSSIRMFFEPEDKLR 754 (1283)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1283)
.+..............+.+..+.+.++.+..|.+....... +..++. .+..++ ......+...|... ...
T Consensus 923 --~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~-----~~~~~~wl~~w~~~-~~~ 994 (1560)
T PTZ00243 923 --GDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELV-----TVSSGVWLSMWSTR-SFK 994 (1560)
T ss_pred --ccccccccccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhccc-ccC
Confidence 00000000000000111112233344444444332111111 111111 111111 11112222233321 112
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHH
Q 000789 755 KDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLV 834 (1283)
Q Consensus 755 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~ 834 (1283)
.....|+.+|+++.++..++.++..+.....+.+...++|+.+|++++++|+.|||+ +++|+++||+++|++.+++.+
T Consensus 995 ~~~~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~--~~~G~ilnR~s~Di~~id~~l 1072 (1560)
T PTZ00243 995 LSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT--TPLGRILNRFSRDIDILDNTL 1072 (1560)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC--CCccHHHHHHHhhHHHHHHHH
Confidence 223456777887777777777777777777788888999999999999999999995 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHhhhH
Q 000789 835 GDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAK----LMYEEASQVANDAVGSIR 910 (1283)
Q Consensus 835 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~e~l~gi~ 910 (1283)
+..+..++..++.+++.++++++.+|.+.+ +++|+.++..++...+ .+..++.+ ...+...+++.|++.|++
T Consensus 1073 ~~~l~~~~~~~~~~i~~li~~~~~~p~~~~---~~i~~~~~~~~i~~~~-~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~ 1148 (1560)
T PTZ00243 1073 PMSYLYLLQCLFSICSSILVTSASQPFVLV---ALVPCGYLYYRLMQFY-NSANREIRRIKSVAKSPVFTLLEEALQGSA 1148 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcHHHHHHHHHHcCHH
Confidence 999999999999998888888888874433 3334433332222222 22334443 345566899999999999
Q ss_pred HHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCcCHHHHHHHHHHHHH
Q 000789 911 TVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSV--LVEHGKATFGQVFKVFFALTI 988 (1283)
Q Consensus 911 tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--l~~~g~~~~~~~~~~~~~~~~ 988 (1283)
|||+|+.++.+.++|.+..+...+..........+......++..+...++.+++.. +...+.+++|.+..++.+...
T Consensus 1149 tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~ 1228 (1560)
T PTZ00243 1149 TITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQ 1228 (1560)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998887766554444333333333333333333333332 333455778887777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC-------------------------CcCC----ccCCCccc
Q 000789 989 SALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSK-------------------------DEGM----TLSSVGGA 1039 (1283)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~-------------------------~~~~----~~~~~~g~ 1039 (1283)
...++..+...+.+++.++.+++|+.++++..|+++... +... +.+...|.
T Consensus 1229 l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 1308 (1560)
T PTZ00243 1229 TTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGS 1308 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCe
Confidence 889999999999999999999999999997543321000 0000 01123578
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+|+||+|+|++. .++||+||||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|+
T Consensus 1309 I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1309 LVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred EEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 9999999999754 356999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccC-C
Q 000789 1120 LVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKN-P 1198 (1283)
Q Consensus 1120 ~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~-p 1198 (1283)
+|||||+||+|||||||+++ ++++|+|+|+||+.++++++|.++|+||||.|||+|.+|||||||||||||||+++ |
T Consensus 1388 iVpQdp~LF~gTIreNIdp~--~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~ 1465 (1560)
T PTZ00243 1388 MIPQDPVLFDGTVRQNVDPF--LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGS 1465 (1560)
T ss_pred EECCCCccccccHHHHhCcc--cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999875 36899999999999999999999999999999999999999999999999999995 8
Q ss_pred CEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhccCchhHHHHHH
Q 000789 1199 KILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278 (1283)
Q Consensus 1199 ~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~ 1278 (1283)
+|||||||||+||++||+.|+++|++.+++||+|+||||++++++||+|+||++|+|+|+|+|+||+++++|.|++|++.
T Consensus 1466 ~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~ 1545 (1560)
T PTZ00243 1466 GFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEA 1545 (1560)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998668999999987
Q ss_pred hhc
Q 000789 1279 HVS 1281 (1283)
Q Consensus 1279 ~~~ 1281 (1283)
+..
T Consensus 1546 ~~~ 1548 (1560)
T PTZ00243 1546 LGR 1548 (1560)
T ss_pred hCh
Confidence 653
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-142 Score=1431.20 Aligned_cols=1175 Identities=16% Similarity=0.198 Sum_probs=839.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 59 SAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTIL 138 (1283)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll 138 (1283)
..++..++....|++++.+++.+...+... ......+++.++++.++..++.....+.....+.++...+...+|+|++
T Consensus 88 ~~~~~~~~~~~~P~ll~~li~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L 166 (1490)
T TIGR01271 88 LLYFGEATKAVQPLLLGRIIASYDPFNAPE-REIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTL 166 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566667788999999873221110 0111112222222233333444444444555666666666677799999
Q ss_pred hCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 139 RQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALI 218 (1283)
Q Consensus 139 ~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~ 218 (1283)
+++...+++. ++|+++|++++|++.+.+.+... ..+....+.+++++++++....+.+++.++++++++.+..+++++
T Consensus 167 ~l~~~~~~~~-~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~ 244 (1490)
T TIGR01271 167 KLSSRVLDKI-STGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQK 244 (1490)
T ss_pred hCCHHHhcCC-CHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999875 89999999999999999977543 334445555555555555555556777788888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 219 MSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVW 298 (1283)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1283)
+.+..++.++..+++.+.+.|.++||++||+|+||+.+.+++.+.++.+.+...+...+..+...+..+.. ..+.++.
T Consensus 245 ~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 322 (1490)
T TIGR01271 245 MMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSG--FFVVFLS 322 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 99999999999999999999999999999999999999999999999888887776665544333322222 2233445
Q ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcccCccccEEE
Q 000789 299 YGSKLIIEKGYNGGTVINVIMAIMTGGMSLG-QTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIEL 377 (1283)
Q Consensus 299 ~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 377 (1283)
++.+.+..+ ++++.+++++.++..+..|+. .+...+..+.++.++++||.++|+.++..+... ......|++
T Consensus 323 f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~------~~~~~~i~~ 395 (1490)
T TIGR01271 323 VVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY------NLTTTEVEM 395 (1490)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc------cCCCCceEE
Confidence 566665544 678888888877776667764 566778899999999999999997654321110 011235999
Q ss_pred EEEEEECCCCC-------------------------------CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcC
Q 000789 378 RDVYFRYPARP-------------------------------EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 378 ~~v~f~y~~~~-------------------------------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 426 (1283)
+|++|.|+... .+++|+|+||+|++|++++|+||||||||||+++|+|+
T Consensus 396 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~ 475 (1490)
T TIGR01271 396 VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE 475 (1490)
T ss_pred ecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 99999995310 13589999999999999999999999999999999999
Q ss_pred CCCCCceEEECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcccc
Q 000789 427 YDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTM 506 (1283)
Q Consensus 427 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~ 506 (1283)
++|++|+|.++| +|+||+|+||+|++||+|||.||.+ .+++++.++++.+++++++..+|+|++|.
T Consensus 476 ~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~ 541 (1490)
T TIGR01271 476 LEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTV 541 (1490)
T ss_pred CCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhcccccccc
Confidence 999999999998 5999999999999999999999875 45566778888889999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHcCCCeEEEEecCchhhhccCEEEEEe
Q 000789 507 AGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD-ALVKIMTSRTTVVVAHRLTTIRNADLIAVVH 585 (1283)
Q Consensus 507 ~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~ 585 (1283)
+|++|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+ .+.++.+++|+|+|||+++.+..||+|++|+
T Consensus 542 vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~ 621 (1490)
T TIGR01271 542 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLH 621 (1490)
T ss_pred ccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999987 4677778899999999999999999999999
Q ss_pred CCEEeEecChhHHhcCCCChhHHHHHHhhc------Cch---hhhh------h--------hcccccc-Cchhhhh----
Q 000789 586 QGKIVEKGTHDELIKDPEGPYTQLVRLQEG------SKE---AEDA------L--------ATDADKL-DSSFDIL---- 637 (1283)
Q Consensus 586 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~------~~~---~~~~------~--------~~~~~~~-~~~~~~~---- 637 (1283)
+|+|++.|+++++... ++.|.+.+..... ... ..+. . ++..... ..+....
T Consensus 622 ~g~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1490)
T TIGR01271 622 EGVCYFYGTFSELQAK-RPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKR 700 (1490)
T ss_pred CCEEEEEcCHHHHHhc-ChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999875 5566665531100 000 0000 0 0000000 0000000
Q ss_pred ------hhh-hcCC---------C---CCCc-cccccc---------------cccCCC----------CCCcc-----c
Q 000789 638 ------DKA-MTRS---------G---SRGE-SMRRSI---------------SRHSSG----------SRHSF-----G 667 (1283)
Q Consensus 638 ------~~~-~~~~---------~---~~~~-~~~~~~---------------~~~~~~----------~~~~~-----~ 667 (1283)
+.. ..+. . .... ...+.. ...... ..... .
T Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1490)
T TIGR01271 701 KQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMT 780 (1490)
T ss_pred cccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccc
Confidence 000 0000 0 0000 000000 000000 00000 0
Q ss_pred cc-----------------cCCCC-C---CCccc--cc-cCCC----CC---CC-----CchhhHhhhhhHHHHHHHHhh
Q 000789 668 FT-----------------YGVPG-P---INVFE--TE-EGDQ----GG---AE-----RTPLMIEKRQKLSMRRLAYLN 711 (1283)
Q Consensus 668 ~~-----------------~~~~~-~---~~~~~--~~-~~~~----~~---~~-----~~~~~~~~~~~~~~~~~~~~~ 711 (1283)
.. ..... . ..... .. ..+. .. .. ...++....+.+.++.+.+|.
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~ 860 (1490)
T TIGR01271 781 HSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYI 860 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHH
Confidence 00 00000 0 00000 00 0000 00 00 000011122334444444444
Q ss_pred cCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch------h-h-------------hhhhHHH-HHHHHHHH
Q 000789 712 KPE--FPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPED------K-L-------------RKDSRFW-ALIYLVLG 768 (1283)
Q Consensus 712 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~-------------~~~~~~~-~~~~~~l~ 768 (1283)
+.. +..+.+.+++.++..++.. +..++...|.... . . .....+| ..+|++++
T Consensus 861 ~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1490)
T TIGR01271 861 TTNRNLVFVLIFCLVIFLAEVAAS-----LLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTA 935 (1490)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHH-----HhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHH
Confidence 322 1221111111111111111 1122222222100 0 0 0011223 44455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000789 769 IINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATI 848 (1283)
Q Consensus 769 ~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~ 848 (1283)
++..++.+++.+++...+.+++.++|.+++++++++|++||++ +++|+++||+++|++.+++.++..+..++..++.+
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~ 1013 (1490)
T TIGR01271 936 DSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT--MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIV 1013 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677788888999999999999999999999999999995 89999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHhccHHHHHHH
Q 000789 849 AAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAK----LMYEEASQVANDAVGSIRTVASFCSEEKVMDL 924 (1283)
Q Consensus 849 ~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~ 924 (1283)
++.++++++.+|+++++ ++|+.+++.+....+.+ ..++.+ ...+...+++.|++.|+.|||+|+.++.+.++
T Consensus 1014 i~~l~~i~~~~p~l~l~---~~~l~~~~~~~~~~~~~-~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~ 1089 (1490)
T TIGR01271 1014 LGAIFVVSVLQPYIFIA---AIPVAVIFIMLRAYFLR-TSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETL 1089 (1490)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHH
Confidence 88888888888875443 33333333322322222 233333 34455679999999999999999999999999
Q ss_pred HHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 925 YEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTN--AFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPD 1002 (1283)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1283)
|.+..+...+..........+......++..+.. +++++++. ...+.|.+..++.+......++..+...+.+
T Consensus 1090 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~ 1164 (1490)
T TIGR01271 1090 FHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSID 1164 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887655433322222111111111111111 11112222 1233344444444555566777888888899
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCc---------------CCcc-CCCcccEEEEEEEEECCCCCCcccccceeEEec
Q 000789 1003 TTKAKDSAASIFEILDSKPKIDSSKDE---------------GMTL-SSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIP 1066 (1283)
Q Consensus 1003 ~~~~~~a~~ri~~~~~~~~~~~~~~~~---------------~~~~-~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~ 1066 (1283)
++..+.+++|+.++.+.+++.....+. ..++ .+..|.|+|+||+|+|++. .+++|+||||+|+
T Consensus 1165 le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~ 1243 (1490)
T TIGR01271 1165 VDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVE 1243 (1490)
T ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEc
Confidence 999999999999999776553211100 0011 1245789999999999854 4679999999999
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCH
Q 000789 1067 SGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATE 1146 (1283)
Q Consensus 1067 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd 1146 (1283)
|||+||||||||||||||+++|+|+|+ ++|+|+|||+|+++++++++|++|+||||||+||+|||||||++. .+++|
T Consensus 1244 ~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~--~~~td 1320 (1490)
T TIGR01271 1244 GGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY--EQWSD 1320 (1490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc--cCCCH
Confidence 999999999999999999999999998 799999999999999999999999999999999999999999875 36899
Q ss_pred HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc
Q 000789 1147 EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM 1226 (1283)
Q Consensus 1147 ~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~ 1226 (1283)
+++|+||++++++++|.++|+||||+|||+|.+||||||||||||||||++|+|||||||||+||++||+.|+++|++.+
T Consensus 1321 eei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~ 1400 (1490)
T TIGR01271 1321 EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF 1400 (1490)
T ss_pred HHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhccCchhHHHHHHhhc
Q 000789 1227 VNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVS 1281 (1283)
Q Consensus 1227 ~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~~~ 1281 (1283)
++||||+||||++++.+||||+||++|+|+|+|+|++|+++ +|.|++|++.+..
T Consensus 1401 ~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1401 SNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADR 1454 (1490)
T ss_pred CCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhCh
Confidence 99999999999999999999999999999999999999984 9999999987643
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-111 Score=987.17 Aligned_cols=576 Identities=38% Similarity=0.632 Sum_probs=543.1
Q ss_pred hhHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 36 VPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQV 115 (1283)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1283)
..+++++.|+++. ++++..+.++.++..+...+.|.++|+++|.+...+. ....+...+..+.++.++.+++++++.
T Consensus 133 ~~~~rl~~l~~~~-~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~--~~~~~~~~~~~l~~l~~~~a~~~~~r~ 209 (716)
T KOG0058|consen 133 TLLKRLLGLLKPE-WKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDD--SADALKRACTILLGLFLIGALANAIRG 209 (716)
T ss_pred hHHHHHHHHhchh-HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999886 5567888888888888899999999999998765211 123344456667777788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000789 116 SCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGW 195 (1283)
Q Consensus 116 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 195 (1283)
+++.+.++++..++|.++|+++++++++|||.+ ++||++||++.|+..+.+.++..+...+.++++.++++++|++++|
T Consensus 210 ~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~ 288 (716)
T KOG0058|consen 210 GLLQYAGERVVARLRTDLFRSLLRQDIAFFDEN-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSW 288 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 999999999999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 196 FLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQG 275 (1283)
Q Consensus 196 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 275 (1283)
+|+++.++.+|+++++..+++++.++..++.|++.++++.+.+|.+++|||||+|+.|+.+.+||.+..++..+...|..
T Consensus 289 ~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a 368 (716)
T KOG0058|consen 289 RLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEA 368 (716)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000789 276 MVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRK 355 (1283)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 355 (1283)
...+.+.....+...+..+.++++|++++..|.+|.|.+.+|++|......++..+...++.++++..|.+|+|+++|.+
T Consensus 369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~ 448 (716)
T KOG0058|consen 369 VAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRK 448 (716)
T ss_pred HHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 000789 356 PKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVL 435 (1283)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 435 (1283)
|..+... ...|...+|.|+|+||+|+||.+++.++|+|+||+|+|||+||+||||||||||+++||.+||+|++|+|+
T Consensus 449 P~i~~~G--~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 449 PRIPLTG--TLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred CCCCCCC--ccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 9886542 22333678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 000789 436 IDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLS 515 (1283)
Q Consensus 436 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 515 (1283)
+||+||+++++.+||++||+|.|||.||++||+|||+||.+++++|++.+|+++|++|+||.++|+||||.|||+|.+||
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS 606 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS 606 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecCh
Q 000789 516 GGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTH 595 (1283)
Q Consensus 516 gGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~ 595 (1283)
|||||||||||||++||.||||||+|||||+++|..++++|.++++++|||+|+|||+|+++||+|+|+++|+|+|.|+|
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h 686 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTH 686 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCChhHHHHHHhhcCc
Q 000789 596 DELIKDPEGPYTQLVRLQEGSK 617 (1283)
Q Consensus 596 ~~l~~~~~~~~~~~~~~~~~~~ 617 (1283)
+||+++++|.|+++.+.|....
T Consensus 687 ~eLl~~~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 687 DELLSKPNGLYAKLVQRQLDSG 708 (716)
T ss_pred HHHhhCcccHHHHHHHHhcccC
Confidence 9999997799999998876543
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-109 Score=973.60 Aligned_cols=573 Identities=38% Similarity=0.597 Sum_probs=541.5
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 702 LSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYF 781 (1283)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~ 781 (1283)
..+++++.+.+|.|+++..+.++..+......+.+.+.+++++.++.. ++......-...++.++.++..++.+++.++
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~-~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~ 211 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEG-DDSADALKRACTILLGLFLIGALANAIRGGL 211 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999998888888888888888888877651 2212223334566667778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000789 782 FGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWI 861 (1283)
Q Consensus 782 ~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 861 (1283)
+..+++++..++|..+|+++++++++|||+ |.+|++++|++.|...+.+.++..+...+.+++..++++.+|+..+|.
T Consensus 212 ~~~a~~rv~~rlR~~lF~sil~QdiaFFD~--nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~ 289 (716)
T KOG0058|consen 212 LQYAGERVVARLRTDLFRSLLRQDIAFFDE--NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWR 289 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence 999999999999999999999999999995 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHH
Q 000789 862 LAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGI 941 (1283)
Q Consensus 862 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1283)
|+++.++.+|++++...++.+++++.+++.++..+++++...|.+.+++|||+|+.|+...++|.+..++..+...|...
T Consensus 290 Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~ 369 (716)
T KOG0058|consen 290 LTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAV 369 (716)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 000789 942 LSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKP 1021 (1283)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 1021 (1283)
..+.+++...++.++....+++||++++..|.++.|++.+++++......++..++..+.++.++..|.+|++++++++|
T Consensus 370 a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P 449 (716)
T KOG0058|consen 370 AYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKP 449 (716)
T ss_pred HhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCCccC-CCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEE
Q 000789 1022 KIDSSKDEGMTLS-SVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVL 1100 (1283)
Q Consensus 1022 ~~~~~~~~~~~~~-~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~ 1100 (1283)
..+.. +...| ...|.|+|+||+|+||.+|+.+||+|+||+|+|||+||+||||||||||+++||+|||+|++|+|+
T Consensus 450 ~i~~~---G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 450 RIPLT---GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred CCCCC---CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 87654 22222 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCC
Q 000789 1101 LDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQL 1180 (1283)
Q Consensus 1101 idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~L 1180 (1283)
+||+||++++..+||++||+|.|||.||++||+|||.||.+ +++||||.+|+++|++||||.++|+||||.|||+|.+|
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qL 605 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQL 605 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccc
Confidence 99999999999999999999999999999999999999955 89999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecC
Q 000789 1181 SGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGS 1260 (1283)
Q Consensus 1181 SgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt 1260 (1283)
||||||||||||||+|||+||||||||||||+++|..||++|.+..+++|||+|||||+||++||+|+|+++|+|+|.|+
T Consensus 606 SGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 606 SGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhccCchhHHHHHHhhc
Q 000789 1261 HDALMKITDGAYASLVALHVS 1281 (1283)
Q Consensus 1261 ~~eLl~~~~g~y~~L~~~~~~ 1281 (1283)
|+||+++++|.|++|+++|..
T Consensus 686 h~eLl~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred HHHHhhCcccHHHHHHHHhcc
Confidence 999999977999999999864
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-102 Score=964.32 Aligned_cols=579 Identities=45% Similarity=0.758 Sum_probs=547.4
Q ss_pred cchhHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 34 QKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFL 113 (1283)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (1283)
.+.++++++++.+| .|.+++++++++++.++..|++.+++++++..+...+.+........++++++++++..++..++
T Consensus 648 ~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~ 726 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFL 726 (1228)
T ss_pred ccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999988 57788999999999999999999999999998865443333333334678888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 114 QVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALAR 193 (1283)
Q Consensus 114 ~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 193 (1283)
+.+++...++++..|+|...|+++++++.+|||...++|.|.+|+.+|...++..+.+.+..+++++..++.++++.|++
T Consensus 727 q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~ 806 (1228)
T KOG0055|consen 727 QHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIY 806 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986666999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 000789 194 GWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQ 273 (1283)
Q Consensus 194 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 273 (1283)
+|+|+++++++.|++++......+.+.....+..+...+.+....|.+++||||++|+.|+++.+.|.+..+...+...+
T Consensus 807 ~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~ 886 (1228)
T KOG0055|consen 807 GWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFK 886 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000789 274 QGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIK 353 (1283)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~ 353 (1283)
.+.+.++.+++.+.+.++.+++.+|+|++++.+|.+++.+++-.++.+.+....+++.....+.+.+|..|+.+++++++
T Consensus 887 ~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~d 966 (1228)
T KOG0055|consen 887 RGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILD 966 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999988888888899999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 000789 354 RKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433 (1283)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 433 (1283)
++|++++..+.+...+..+|+|+|+||+|+||.+|+.++|+|+||+|++|+++||||||||||||++.||.|+|+|++|.
T Consensus 967 r~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~ 1046 (1228)
T KOG0055|consen 967 RKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGK 1046 (1228)
T ss_pred CCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe
Confidence 99987765433444567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 000789 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQ 513 (1283)
Q Consensus 434 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~ 513 (1283)
|.|||+|++++++++||++||.|.|||.||++||||||+||.+.++++|+.+||+.+++|+||.+||+||||.+||+|.+
T Consensus 1047 V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~Q 1126 (1228)
T KOG0055|consen 1047 VKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQ 1126 (1228)
T ss_pred EEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCc
Confidence 99999999999999999999999999999999999999999666899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEec
Q 000789 514 LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKG 593 (1283)
Q Consensus 514 LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g 593 (1283)
||||||||||||||+++||+||||||+|||||.++|+.+|++|++.+.+||+|+|||||+++++||.|+|+++|+|+|+|
T Consensus 1127 LSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1127 LSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred CCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhcCCCChhHHHHHHhh
Q 000789 594 THDELIKDPEGPYTQLVRLQE 614 (1283)
Q Consensus 594 ~~~~l~~~~~~~~~~~~~~~~ 614 (1283)
||++|++. +|.|.+|++.|.
T Consensus 1207 tH~~L~~~-~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1207 THDELLAK-RGIYFRLVQLQS 1226 (1228)
T ss_pred cHHHHHhC-CCchHHHhhhcc
Confidence 99999995 999999998764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-93 Score=876.97 Aligned_cols=570 Identities=31% Similarity=0.482 Sum_probs=523.6
Q ss_pred chhHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 35 KVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQ 114 (1283)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1283)
+..+.+++....+++. .+.-.++.+++..+.....|++.+.++|.+..... ...+....+.++++++...++.+++
T Consensus 139 ~~~~~~f~~~~~~~~~-~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~---~~tL~vl~ig~~~~~l~~~~l~~lr 214 (709)
T COG2274 139 PFGLSWFIPLLFKYRR-LLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS---RSTLTVLAIGLLLAALFEALLRLLR 214 (709)
T ss_pred ccchHhHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666543 33444555555666666677788999998765432 2334455666677778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000789 115 VSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARG 194 (1283)
Q Consensus 115 ~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 194 (1283)
.+...+.+.|+..++-.++|+|++++|++||+++ ++||+++|+. |.+.|+++++..+...+.++.++++.+++|++++
T Consensus 215 ~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r-~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys 292 (709)
T COG2274 215 TYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKR-SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYS 292 (709)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCC-ChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987 9999999997 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 000789 195 WFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQ 274 (1283)
Q Consensus 195 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 274 (1283)
|.|++++++.+|+++++..++.+.+++..++..+..++.++.+.|+++|+++||+.+.|..+..+|++...+..+.+.+.
T Consensus 293 ~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~ 372 (709)
T COG2274 293 WKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKT 372 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000789 275 GMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKR 354 (1283)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~ 354 (1283)
.........+..++..++.++++|+|+++|.+|.+|.|.+++|.+.......|+.++...+..++++..+.+|+.++++.
T Consensus 373 ~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~ 452 (709)
T COG2274 373 EKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDT 452 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 000789 355 KPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434 (1283)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 434 (1283)
++|.+... .....++..|+|+|+||+|+|+.++ .++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|
T Consensus 453 ~~E~~~~~-~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I 530 (709)
T COG2274 453 PPEQEGDK-TLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI 530 (709)
T ss_pred Cccccccc-ccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 88754432 1234566789999999999998653 479999999999999999999999999999999999999999999
Q ss_pred EECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCC
Q 000789 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQL 514 (1283)
Q Consensus 435 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~L 514 (1283)
++||.|+.++++.++|++||||+||+.||+|||+|||+++.|++++|++.+||+.+++|+||.++|.||+|.+||+|.+|
T Consensus 531 ~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~L 610 (709)
T COG2274 531 LLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANL 610 (709)
T ss_pred EECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecC
Q 000789 515 SGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGT 594 (1283)
Q Consensus 515 SgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~ 594 (1283)
||||||||+|||||++||+||||||||||||+++|+.|.+.|.++..++|+|+||||++++++||||+||++|+|+++|+
T Consensus 611 SGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs 690 (709)
T COG2274 611 SGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGS 690 (709)
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhcCCCChhHHHHHHh
Q 000789 595 HDELIKDPEGPYTQLVRLQ 613 (1283)
Q Consensus 595 ~~~l~~~~~~~~~~~~~~~ 613 (1283)
|+||++. +|.|.++++.|
T Consensus 691 ~~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 691 HEELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred HHHHHHh-cChHHHHHhcc
Confidence 9999998 99999998755
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-93 Score=873.20 Aligned_cols=551 Identities=32% Similarity=0.518 Sum_probs=504.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 718 LLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLT 797 (1283)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~ 797 (1283)
+++..++..+.+++.|++..++.+ ... ++............+++++++..++.+++.+++...+.++...+-..+
T Consensus 159 v~~~sl~l~i~~l~~p~~~q~viD---~Vl--~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~ 233 (709)
T COG2274 159 VLLASLLLQLLALATPLFSQIVID---KVL--PDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRF 233 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hhh--ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344444445555555555444332 221 112222333445566677888899999999999999999999999999
Q ss_pred HHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000789 798 FEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQG 877 (1283)
Q Consensus 798 ~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~ 877 (1283)
|+|++++|++||.+ +++|++++|+ +|.+.++++++.....++.+++..++.++++++++|++++++++.+|++++..
T Consensus 234 ~~hll~Lpl~~f~~--r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~ 310 (709)
T COG2274 234 FRHLLRLPLSYFEK--RSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLIT 310 (709)
T ss_pred HHHHHcCcHHHccC--CChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999995 8999999998 57999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000789 878 YTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCT 957 (1283)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1283)
++..+++++..++.....++.++.+.|++.|++|||+.+.|.++..+|++.+.+..+..++..........+..++..+.
T Consensus 311 ~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 390 (709)
T COG2274 311 LIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLS 390 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCc
Q 000789 958 NAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVG 1037 (1283)
Q Consensus 958 ~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1283)
.++++|+|.+++..|.+|+|+++++......+..|+..+.+.+.+++....+.+|+.++++.++|.+.... ....+...
T Consensus 391 ~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~-~~~~~~~~ 469 (709)
T COG2274 391 SVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT-LIHLPKLQ 469 (709)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-cccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999887543321 22345577
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcc
Q 000789 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQ 1117 (1283)
Q Consensus 1038 g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1117 (1283)
|.|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+|+|.|+|+|++|+|++||+|+.++++.++|++
T Consensus 470 g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ 548 (709)
T COG2274 470 GEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ 548 (709)
T ss_pred ceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhh
Confidence 999999999999866 3579999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccC
Q 000789 1118 MGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKN 1197 (1283)
Q Consensus 1118 i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~ 1197 (1283)
|+|||||+.||+|||||||++++ +++++||+++||+.+++|+||.++|.||||+|||+|.+|||||||||+|||||+++
T Consensus 549 ig~V~Q~~~Lf~gSI~eNi~l~~-p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 549 VGYVLQDPFLFSGSIRENIALGN-PEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK 627 (709)
T ss_pred eeEEcccchhhcCcHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999994 57999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhccCchhHHHHH
Q 000789 1198 PKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVA 1277 (1283)
Q Consensus 1198 p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~ 1277 (1283)
|+||||||||||||++||+.|.+.|.+...+||+|+||||++++++||||+||++|+|+|+|+|+||++. +|.|+++++
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~ 706 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQ 706 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred Hhh
Q 000789 1278 LHV 1280 (1283)
Q Consensus 1278 ~~~ 1280 (1283)
+|.
T Consensus 707 ~q~ 709 (709)
T COG2274 707 QQE 709 (709)
T ss_pred ccC
Confidence 873
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-87 Score=845.37 Aligned_cols=569 Identities=21% Similarity=0.270 Sum_probs=488.7
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 37 PFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVS 116 (1283)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1283)
.+++++++.+++++ .+++++++.++..++.+..|++++.++|.+...+.+ ...+..+...++++.++..++.+++.+
T Consensus 9 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (588)
T PRK11174 9 LTRWLKQQSKPAKR-WLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP--REALLPPFILLILLFVLRALLAWLRER 85 (588)
T ss_pred hhHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888754 556777888888888889999999999976421111 011222333344455566778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000789 117 CWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWF 196 (1283)
Q Consensus 117 ~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 196 (1283)
+..+.+.++..++|.++|+|++++|+++|++. ++|++++|+++|++.+++++...+..++..++.+++.++++++++|.
T Consensus 86 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (588)
T PRK11174 86 VGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGK-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWA 164 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhhccC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999976 89999999999999999999999999999988889899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 197 LALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGM 276 (1283)
Q Consensus 197 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 276 (1283)
+++++++++|+++++...+.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T PRK11174 165 AGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLR 244 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888999999999999999999999999999999999999999999999999999998888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 277 VSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTV---------INVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYK 347 (1283)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~r 347 (1283)
......++..++..+..+++++++++.+. |.+|.|.+ ++++++......|+..+...+..++++.++++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 323 (588)
T PRK11174 245 MAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAES 323 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666655555555444455554443 77777754 112233344567999999999999999999999
Q ss_pred HHHHHccCCCCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCC
Q 000789 348 MFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 348 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 427 (1283)
+.++++.+++.++.. ....+....+.|+|+||+|.|++ ++++|+|+||+|+||+++|||||||||||||+++|+|+|
T Consensus 324 i~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 324 LVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred HHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 999998765422111 10111112357999999987763 246999999999999999999999999999999999999
Q ss_pred CCCCceEEECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccc
Q 000789 428 DPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMA 507 (1283)
Q Consensus 428 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~ 507 (1283)
|++|+|++||+|+++++.+++|++|+||||+|+||++||+|||++|+|++++++++++|+.+++++|++++|+||||.+
T Consensus 401 -p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~v 479 (588)
T PRK11174 401 -PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPI 479 (588)
T ss_pred -CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCC
Q 000789 508 GEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQG 587 (1283)
Q Consensus 508 ~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G 587 (1283)
||+|.+|||||||||+|||||++||+|||||||||+||+++|+.|++.|+++.+++|+|+||||+++++.||+|++|++|
T Consensus 480 ge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G 559 (588)
T PRK11174 480 GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDG 559 (588)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred EEeEecChhHHhcCCCChhHHHHHHhhc
Q 000789 588 KIVEKGTHDELIKDPEGPYTQLVRLQEG 615 (1283)
Q Consensus 588 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 615 (1283)
+|+|+|+|+||+++ ++.|++++..|..
T Consensus 560 ~i~e~G~~~eL~~~-~~~y~~l~~~q~~ 586 (588)
T PRK11174 560 QIVQQGDYAELSQA-GGLFATLLAHRQE 586 (588)
T ss_pred eEeecCCHHHHHhc-chHHHHHHHHhhc
Confidence 99999999999987 7899999977643
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-86 Score=828.94 Aligned_cols=563 Identities=34% Similarity=0.578 Sum_probs=507.0
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 37 PFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVS 116 (1283)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1283)
.+++++.+.+ .+ .+.++.++.++..+.....|++++.++|.+.. + .........+++++.++..++.+...+
T Consensus 3 ~~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~----~~~~~~~~~~~~~~~~~~~v~~~~~~~ 74 (567)
T COG1132 3 LLRRLLKYLK--YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA-D----LGELLELLLLLLLLALLGGVLRALQSY 74 (567)
T ss_pred hHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666555 34 56677777777788888888899999998751 1 122233334444455566777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000789 117 CWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWF 196 (1283)
Q Consensus 117 ~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 196 (1283)
+..+.+.++..++|.+++++++++|+++|++. ++|++++|+++|++.++..+......+...+..+++.+++++..+|.
T Consensus 75 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (567)
T COG1132 75 LGSRLGQKIVADLRRDLFEKLLRLPLSFFDKA-KSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWR 153 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcC-CcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88888899999999999999999999999986 89999999999999999999888666666788888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 197 LALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGM 276 (1283)
Q Consensus 197 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 276 (1283)
+++++++..|++.+...++.++.++..++.++..+++++.+.|.++|+++||+|+.++.+.+++.+..+...+...+...
T Consensus 154 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (567)
T COG1132 154 LALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASR 233 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000789 277 VSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKP 356 (1283)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 356 (1283)
..+...++..++..+...+++++|.+++..+.+++|.+++++.+......|+..+...+..++.+..+++|++++++.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 313 (567)
T COG1132 234 LEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEP 313 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 000789 357 KIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLI 436 (1283)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 436 (1283)
+..+... ......++|+|+||+|+|++ ++++|+|+||+++|||++||||||||||||++++|+|+|+|++|+|++
T Consensus 314 ~~~~~~~---~~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 314 EVEDPPD---PLKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred cccCCCC---CCCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 5433221 12334578999999999974 347999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 000789 437 DGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSG 516 (1283)
Q Consensus 437 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 516 (1283)
||+|+++++.+++|++|+||||||+||++||+|||.+|+|+++++++++||+.++++||++++|+||||.+||+|.+|||
T Consensus 389 dg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSg 468 (567)
T COG1132 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG 468 (567)
T ss_pred CCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChh
Q 000789 517 GQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHD 596 (1283)
Q Consensus 517 GqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 596 (1283)
||||||+||||+++||+|||||||||+||++||+.|++++.++.++||+|+||||++++++||+|+||++|+|+|.|+|+
T Consensus 469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~ 548 (567)
T COG1132 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHE 548 (567)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHhh
Q 000789 597 ELIKDPEGPYTQLVRLQE 614 (1283)
Q Consensus 597 ~l~~~~~~~~~~~~~~~~ 614 (1283)
||+++ +|.|+++|..|.
T Consensus 549 eLl~~-~g~y~~l~~~~~ 565 (567)
T COG1132 549 ELLAK-GGLYARLYQAQG 565 (567)
T ss_pred HHHHc-CCHHHHHHHHhh
Confidence 99998 999999998764
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-86 Score=887.22 Aligned_cols=571 Identities=29% Similarity=0.465 Sum_probs=492.4
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 37 PFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVS 116 (1283)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1283)
.+++++++.+++++ .++++++++++.+++.|++|++++.++|.+.... ........+++++++++++.+++.+++.+
T Consensus 812 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~l~~~~~~i~~~~~~~l~~~ 888 (1466)
T PTZ00265 812 NLRIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDFA--NLEANSNKYSLYILVIAIAMFISETLKNY 888 (1466)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777666544 4677888888999999999999999999764221 11112334456666677778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhc-cCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000789 117 CWMVTGERQATRIRGLYLKTILRQDIGFFDT-ETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGW 195 (1283)
Q Consensus 117 ~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~-~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 195 (1283)
+..+.++++..++|.++|++++++|++||++ ++++|++++|+++|++.++.++...+..++..++.++++++++++++|
T Consensus 889 ~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~ 968 (1466)
T PTZ00265 889 YNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCP 968 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999985 237899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhhHHHHHHhccHHHHH
Q 000789 196 FLALVLLACLPAIVIAGGSMALIMSKMS-SR-----------------GQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAI 257 (1283)
Q Consensus 196 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~ 257 (1283)
.+++++++++++ +...+.++.+... ++ .++..++.+..++|.++|+++||+|+.|+.+.
T Consensus 969 ~l~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~ 1045 (1466)
T PTZ00265 969 IVAAVLTGTYFI---FMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFC 1045 (1466)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHH
Confidence 988876544433 3334444332211 11 23345677899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 258 EKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNA 337 (1283)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~ 337 (1283)
++|.+..+...+...+.....++..++..++..+..++++|+|++++..|.+++|.+++++.+++....++..+...+..
T Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~ 1125 (1466)
T PTZ00265 1046 NLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGD 1125 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888888888899999999999999999999999887776666677888888999
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCCCCCCc---ccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCC
Q 000789 338 FAGGQAAAYKMFETIKRKPKIDPYDTSGIT---LEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGS 414 (1283)
Q Consensus 338 ~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGs 414 (1283)
++++.++++|++++++.+++.+........ ++..++.|+|+||+|+||++++.++|+|+||+|+||+++||||||||
T Consensus 1126 ~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGs 1205 (1466)
T PTZ00265 1126 SENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGS 1205 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCC
Confidence 999999999999999876644221111111 22345789999999999876556899999999999999999999999
Q ss_pred cHHHHHHHHHcCCCC------------------------------------------------------CCceEEECCcc
Q 000789 415 GKSTVISLVERFYDP------------------------------------------------------DAGEVLIDGID 440 (1283)
Q Consensus 415 GKSTl~~ll~~~~~~------------------------------------------------------~~G~i~~~g~~ 440 (1283)
|||||+++|+|+|+| ++|+|++||+|
T Consensus 1206 GKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~d 1285 (1466)
T PTZ00265 1206 GKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVD 1285 (1466)
T ss_pred CHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEE
Confidence 999999999999999 69999999999
Q ss_pred cCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000789 441 IKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQ 520 (1283)
Q Consensus 441 ~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkq 520 (1283)
+++++.+++|++||||+|||+||++||+|||+||.|+++++++++||+.+++++||.+||+||||.+||+|.+|||||||
T Consensus 1286 i~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQ 1365 (1466)
T PTZ00265 1286 ICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQ 1365 (1466)
T ss_pred HHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeC----CEEe-Eec
Q 000789 521 RIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRNADLIAVVHQ----GKIV-EKG 593 (1283)
Q Consensus 521 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~----G~i~-~~g 593 (1283)
||||||||+++|+|||||||||+||+++|+.|+++|.++. +++|+|+||||++++++||+|+||++ |+++ |+|
T Consensus 1366 RIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~G 1445 (1466)
T PTZ00265 1366 RIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHG 1445 (1466)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEec
Confidence 9999999999999999999999999999999999999984 68999999999999999999999999 9955 899
Q ss_pred ChhHHhcCCCChhHHHHHHh
Q 000789 594 THDELIKDPEGPYTQLVRLQ 613 (1283)
Q Consensus 594 ~~~~l~~~~~~~~~~~~~~~ 613 (1283)
+|+||+++.+|.|++++..|
T Consensus 1446 th~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1446 THEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred CHHHHHhcCCChHHHHHhhc
Confidence 99999974479999998754
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-86 Score=823.00 Aligned_cols=554 Identities=35% Similarity=0.570 Sum_probs=491.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 714 EFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRI 793 (1283)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~l 793 (1283)
.+ .+.++.++..+...+.....++++..++.... .......+..+++++.++..++.++..++..+.+.+...++
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 87 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA----DLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADL 87 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 55555555555555555566666666655441 11122334444555556777788888888888889999999
Q ss_pred HHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000789 794 RSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLM 873 (1283)
Q Consensus 794 r~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~ 873 (1283)
|.++|+++++.|++||++ +++|++++|+++|++.++..+......+...++.+++.+++++..+|.+++++++..|++
T Consensus 88 r~~~~~~l~~~~~~~~~~--~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 165 (567)
T COG1132 88 RRDLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLL 165 (567)
T ss_pred HHHHHHHHHhCCHHHhCc--CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999996 789999999999999999999988666776888999999999999999999999998888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHH
Q 000789 874 LVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLV 953 (1283)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1283)
.+......+..++..+..++..++..+.+.|.+.|+++||+|+.++...++|.+..+...+...+.....+...++...+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 166 ALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777666777888888889999999999999999999999999999999999988888877777777777888888
Q ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCcc
Q 000789 954 LYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTL 1033 (1283)
Q Consensus 954 ~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~ 1033 (1283)
..+...+++++|..++..+.+++|.+.+++.+......++..+......+..+..+.+|++++++.+++....... .
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~ 322 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---L 322 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---C
Confidence 8889999999999999999999999999999999999999999999999999999999999999986653322211 2
Q ss_pred CCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHH
Q 000789 1034 SSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW 1113 (1283)
Q Consensus 1034 ~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~ 1113 (1283)
....+.|+|+||+|+|++ ++++|+|+||+|+|||++||||||||||||++++|+|+|+|++|+|+|||+||++++.++
T Consensus 323 ~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 323 KDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred CCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHH
Confidence 234567999999999984 357999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1114 LRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1114 lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
||++|++|||||+||++||+|||++|.+ +++|||+++||+.++++|||+++|+||||.|||+|.+||||||||||||||
T Consensus 401 lr~~I~~V~Qd~~LF~~TI~~NI~~g~~-~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARa 479 (567)
T COG1132 401 LRKRIGIVSQDPLLFSGTIRENIALGRP-DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARA 479 (567)
T ss_pred HHHhccEEcccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999954 699999999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhccCchhH
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYA 1273 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~ 1273 (1283)
++++|+|||||||||+||++||+.|++++++..+++|+|+||||++|+++||+|+|||+|+|+|+|+|+||+++ +|.|+
T Consensus 480 ll~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~ 558 (567)
T COG1132 480 LLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYA 558 (567)
T ss_pred HhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999997 99999
Q ss_pred HHHHHhhc
Q 000789 1274 SLVALHVS 1281 (1283)
Q Consensus 1274 ~L~~~~~~ 1281 (1283)
+||+.|..
T Consensus 559 ~l~~~~~~ 566 (567)
T COG1132 559 RLYQAQGG 566 (567)
T ss_pred HHHHHhhc
Confidence 99998864
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-86 Score=838.07 Aligned_cols=566 Identities=33% Similarity=0.541 Sum_probs=502.3
Q ss_pred cchhHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 34 QKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFL 113 (1283)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (1283)
....+++++++.++. +..++.++++.++.++.....|++++.++|.+...... ..+....++++++.++..++.++
T Consensus 145 ~~~~~~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l 220 (711)
T TIGR00958 145 TADLLFRLLGLSGRD-WPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP---PALASAIFFMCLLSIASSVSAGL 220 (711)
T ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888765 44566777788888888888999999999987533211 11222233344445556677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 114 QVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALAR 193 (1283)
Q Consensus 114 ~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 193 (1283)
+.++..+.+.++..++|.++|++++++|+++|++. ++|++++|+++|++.+++.+...+..++..++.+++.+++++.+
T Consensus 221 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~-~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~ 299 (711)
T TIGR00958 221 RGGSFNYTMARINLRIREDLFRSLLRQDLGFFDEN-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWL 299 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999976 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 000789 194 GWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQ 273 (1283)
Q Consensus 194 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 273 (1283)
+|.+++++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+
T Consensus 300 s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 379 (711)
T TIGR00958 300 SPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKR 379 (711)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000789 274 QGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIK 353 (1283)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~ 353 (1283)
.....+....+..++..+..++++++|++++.+|.++.|.+++++.+......|+..+...+..++++..+.+|++++++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~ 459 (711)
T TIGR00958 380 KALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLD 459 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77766666666666666677778889999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 000789 354 RKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433 (1283)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 433 (1283)
.+++.++.. ...+.+..+.|+|+||+|+|++++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+
T Consensus 460 ~~~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~ 537 (711)
T TIGR00958 460 RKPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537 (711)
T ss_pred CCCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence 766543221 112223457899999999998655568999999999999999999999999999999999999999999
Q ss_pred EEECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 000789 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQ 513 (1283)
Q Consensus 434 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~ 513 (1283)
|++||+|+++++.+++|++|+||+|||++|++||+|||.+|.++.++++++++++.++++++++++|+|+||.+||+|.+
T Consensus 538 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~ 617 (711)
T TIGR00958 538 VLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ 617 (711)
T ss_pred EEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCc
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEec
Q 000789 514 LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKG 593 (1283)
Q Consensus 514 LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g 593 (1283)
|||||||||+||||++++|+|||||||||+||+++|+.+++ ....+++|+|+||||+++++.||+|++|++|+|+|+|
T Consensus 618 LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~G 695 (711)
T TIGR00958 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMG 695 (711)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEee
Confidence 99999999999999999999999999999999999999998 3334689999999999999999999999999999999
Q ss_pred ChhHHhcCCCChhHHH
Q 000789 594 THDELIKDPEGPYTQL 609 (1283)
Q Consensus 594 ~~~~l~~~~~~~~~~~ 609 (1283)
+|+||+++ ++.|+++
T Consensus 696 t~~eL~~~-~~~y~~l 710 (711)
T TIGR00958 696 THKQLMED-QGCYKHL 710 (711)
T ss_pred CHHHHHhC-CCchHhc
Confidence 99999987 7888765
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-85 Score=824.73 Aligned_cols=568 Identities=22% Similarity=0.289 Sum_probs=482.3
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 704 MRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFG 783 (1283)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 783 (1283)
+++++.+.++.++.+++++++..+..++....++++...++........ ......+..+++++.++..++.+++.++..
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-REALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888888888777888888777654321111 111223444455566677788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000789 784 VAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILA 863 (1283)
Q Consensus 784 ~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 863 (1283)
..+.++..++|.++|+++++.|.+||++ +++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|+++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 166 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQG--KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAG 166 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhcc--CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999995 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHH
Q 000789 864 FVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILS 943 (1283)
Q Consensus 864 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1283)
+++++++|++++......+..+...++..+...+..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.....
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK11174 167 LILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMA 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887777777777777888888889999999999999999999999999999999998888777666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 944 GAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQV---------FKVFFALTISALGVSQTSAMAPDTTKAKDSAASIF 1014 (1283)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~ 1014 (1283)
.....+...+..+..+++.+++++.+ .|.+++|.+ +.+..+......|+..+...+..+..+..+.+|+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~ 325 (588)
T PRK11174 247 FLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLV 325 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444444444444444433 377776653 22223445566889999999999999999999999
Q ss_pred HHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC
Q 000789 1015 EILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP 1094 (1283)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~ 1094 (1283)
++++.+++...... ...+....+.|+|+||+|.|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+| |
T Consensus 326 ~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p 401 (588)
T PRK11174 326 TFLETPLAHPQQGE-KELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P 401 (588)
T ss_pred HHHcCCCcccCCCc-cccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 99987653221111 0011112357999999998864 357999999999999999999999999999999999999 9
Q ss_pred CcceEEECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccC
Q 000789 1095 DSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVG 1174 (1283)
Q Consensus 1095 ~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vg 1174 (1283)
++|+|++||+|+++++.+++|++|+||||||+||++||||||.+|. ++++|||+++|++.|++++||+++|+||||.||
T Consensus 402 ~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vg 480 (588)
T PRK11174 402 YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIG 480 (588)
T ss_pred CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCC-CCCCHHHHHHHHHHhCHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999999999999984 479999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCE
Q 000789 1175 ERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGV 1254 (1283)
Q Consensus 1175 e~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~ 1254 (1283)
|+|.+||||||||||||||++++|+|||||||||+||++||+.|+++|++..+++|+|+||||++++++||+|+||++|+
T Consensus 481 e~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~ 560 (588)
T PRK11174 481 DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQ 560 (588)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCe
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred EEEecChHHHHhccCchhHHHHHHhhc
Q 000789 1255 IAEQGSHDALMKITDGAYASLVALHVS 1281 (1283)
Q Consensus 1255 Ive~Gt~~eLl~~~~g~y~~L~~~~~~ 1281 (1283)
|+|.|+|+||+++ +|.|++|++.|.+
T Consensus 561 i~e~G~~~eL~~~-~~~y~~l~~~q~~ 586 (588)
T PRK11174 561 IVQQGDYAELSQA-GGLFATLLAHRQE 586 (588)
T ss_pred EeecCCHHHHHhc-chHHHHHHHHhhc
Confidence 9999999999996 8999999998865
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-84 Score=825.24 Aligned_cols=564 Identities=26% Similarity=0.340 Sum_probs=500.1
Q ss_pred hhHHHHHHh-hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 36 VPFYKLFAF-ADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQ 114 (1283)
Q Consensus 36 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1283)
..+++++++ .++. +..++..++++++..++....|++++.++|.+..... ...+...++.++++.++.+++.+++
T Consensus 121 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~ 196 (686)
T TIGR03797 121 LGLRDLLRFALRGA-RRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD---RSLLVQIALALLAAAVGAAAFQLAQ 196 (686)
T ss_pred ccHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666 3444 3344556667777777777888899999998753221 1223333444555556677888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000789 115 VSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARG 194 (1283)
Q Consensus 115 ~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 194 (1283)
.++....+.++..++|.++|+|++++|+.||++. ++|++++|++ |++.+++.+...+...+..+..+++.++++++++
T Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (686)
T TIGR03797 197 SLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQY-STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYS 274 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999976 9999999997 8999999998887777777777788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 000789 195 WFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQ 274 (1283)
Q Consensus 195 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 274 (1283)
|.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+++.|+.+.++|.+..++..+...+.
T Consensus 275 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 354 (686)
T TIGR03797 275 WKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSA 354 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888889999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000789 275 GMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKR 354 (1283)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~ 354 (1283)
.....+...+..++..+..++++|+|++++.+|.+|+|.++++.++......|+.++...+..++++..+.+|+.++++.
T Consensus 355 ~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 434 (686)
T TIGR03797 355 QRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEA 434 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888877777777778888889999999999999999999999998888999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 000789 355 KPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434 (1283)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 434 (1283)
+++.+... ..+....+.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|
T Consensus 435 ~~e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I 510 (686)
T TIGR03797 435 LPEVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV 510 (686)
T ss_pred CcccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 65532211 1122345689999999999743 3579999999999999999999999999999999999999999999
Q ss_pred EECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCC
Q 000789 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQL 514 (1283)
Q Consensus 435 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~L 514 (1283)
++||+|+++++.+++|++||||||||++|++||+|||.+++| +++++++++++.++++++++++|+|+||.+||+|.+|
T Consensus 511 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~L 589 (686)
T TIGR03797 511 FYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTL 589 (686)
T ss_pred EECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 999999999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecC
Q 000789 515 SGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGT 594 (1283)
Q Consensus 515 SgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~ 594 (1283)
||||||||+|||||+++|+|||||||||+||+++|+.+.+.|+++ ++|+|+||||+++++.||+|+||++|+|+++|+
T Consensus 590 SGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~ 667 (686)
T TIGR03797 590 SGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGT 667 (686)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999999886 589999999999999999999999999999999
Q ss_pred hhHHhcCCCChhHHHHHHh
Q 000789 595 HDELIKDPEGPYTQLVRLQ 613 (1283)
Q Consensus 595 ~~~l~~~~~~~~~~~~~~~ 613 (1283)
|+||+++ ++.|++++..|
T Consensus 668 ~~~Ll~~-~~~y~~l~~~q 685 (686)
T TIGR03797 668 YDELMAR-EGLFAQLARRQ 685 (686)
T ss_pred HHHHHhC-CcHHHHHHHhc
Confidence 9999987 89999988754
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-84 Score=827.38 Aligned_cols=564 Identities=34% Similarity=0.515 Sum_probs=498.0
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 703 SMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFF 782 (1283)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~ 782 (1283)
.+++++.+.++.++.+..+.++.++..+.....+++.+.+++......+ .........+++++.++..++.+++.+++
T Consensus 148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (711)
T TIGR00958 148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG--PPALASAIFFMCLLSIASSVSAGLRGGSF 225 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777778777777777777777777777777777765542211 11112233444455566777788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000789 783 GVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWIL 862 (1283)
Q Consensus 783 ~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 862 (1283)
.+.+.++..++|.++|++++++|++||++ +++|++++|+++|++.+++.+...+..++..++.+++.+++++..+|.+
T Consensus 226 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~~--~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l 303 (711)
T TIGR00958 226 NYTMARINLRIREDLFRSLLRQDLGFFDE--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRL 303 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999985 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHH
Q 000789 863 AFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGIL 942 (1283)
Q Consensus 863 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1283)
++++++..|++++......++.+...++.++...+..+.+.|+++|+++||+|+.|+++.++|.+..++..+...+....
T Consensus 304 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 383 (711)
T TIGR00958 304 TMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALA 383 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888888889999999999999999999999999999999999988888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 000789 943 SGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPK 1022 (1283)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 1022 (1283)
..........+..+..++++++|.+++..|.++.|.++++..+......++..+.....++.++..+.+|++++++.+++
T Consensus 384 ~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 463 (711)
T TIGR00958 384 YAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPN 463 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 66666666677777778888999999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEEC
Q 000789 1023 IDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLD 1102 (1283)
Q Consensus 1023 ~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~id 1102 (1283)
.+.... ..+.+..+.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 464 ~~~~~~--~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~id 541 (711)
T TIGR00958 464 IPLTGT--LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD 541 (711)
T ss_pred CCCCCC--CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 432211 111234568999999999997656689999999999999999999999999999999999999999999999
Q ss_pred CccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCCh
Q 000789 1103 NIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSG 1182 (1283)
Q Consensus 1103 G~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1182 (1283)
|+|+++++.+++|++|+||||||++|++||||||.++. ++++|++++++++.++++++++++|+||||.+||+|.+|||
T Consensus 542 g~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 620 (711)
T TIGR00958 542 GVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGL-TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620 (711)
T ss_pred CEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence 99999999999999999999999999999999999984 46899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChH
Q 000789 1183 GQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHD 1262 (1283)
Q Consensus 1183 GQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~ 1262 (1283)
|||||||||||++++|+|||||||||+||+++|+.|++ ....+++|+|+||||+++++.||+|+||++|+|+|+|+|+
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~ 698 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHK 698 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHH
Confidence 99999999999999999999999999999999999999 3345789999999999999999999999999999999999
Q ss_pred HHHhccCchhHHHH
Q 000789 1263 ALMKITDGAYASLV 1276 (1283)
Q Consensus 1263 eLl~~~~g~y~~L~ 1276 (1283)
||+++ +|.|++|+
T Consensus 699 eL~~~-~~~y~~lv 711 (711)
T TIGR00958 699 QLMED-QGCYKHLV 711 (711)
T ss_pred HHHhC-CCchHhcC
Confidence 99996 89999874
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-84 Score=826.36 Aligned_cols=565 Identities=25% Similarity=0.395 Sum_probs=500.0
Q ss_pred hhHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 36 VPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQV 115 (1283)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1283)
..+++++++.+++++ .++..++++++..++....|++++.++|.+..... ...+...++.++++.++..++.+++.
T Consensus 142 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~ 217 (708)
T TIGR01193 142 NSLLKFIPLITRQKK-LIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM---MGTLGIISIGLIIAYIIQQILSYIQI 217 (708)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777776544 44555666667777777888899999998654321 12223333344445556677888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000789 116 SCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGW 195 (1283)
Q Consensus 116 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 195 (1283)
++..+.+.++..++|.++|+|++++|+.||++. ++|++++|++ |++.+++++...+...+..+..+++.++++++++|
T Consensus 218 ~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (708)
T TIGR01193 218 FLLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNM 295 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999976 9999999998 99999999888888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 196 FLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQG 275 (1283)
Q Consensus 196 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 275 (1283)
.+++++++.+|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+...+..+...+..
T Consensus 296 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 375 (708)
T TIGR01193 296 LLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQ 375 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000789 276 MVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRK 355 (1283)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 355 (1283)
...+....+..++..+..++++++|++++.+|.+|+|.++++.++......|+.++...+..++.+..+.+|+.++++.+
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~ 455 (708)
T TIGR01193 376 KADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVD 455 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77777777777777777788889999999999999999999999999889999999999999999999999999999876
Q ss_pred CCCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 000789 356 PKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVL 435 (1283)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 435 (1283)
++.+.... ....+...+.|+++||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 456 ~e~~~~~~-~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~ 532 (708)
T TIGR01193 456 SEFINKKK-RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL 532 (708)
T ss_pred Cccccccc-ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEE
Confidence 55432211 0112234578999999999974 34799999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCC
Q 000789 436 IDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYG-KENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQL 514 (1283)
Q Consensus 436 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~-~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~L 514 (1283)
+||+|+++++.+++|++||||||||++|++||+|||.++ .+++++++++++++.++++++++++|+||||.+||+|.+|
T Consensus 533 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~L 612 (708)
T TIGR01193 533 LNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612 (708)
T ss_pred ECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCC
Confidence 999999999999999999999999999999999999999 5788999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecC
Q 000789 515 SGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGT 594 (1283)
Q Consensus 515 SgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~ 594 (1283)
||||||||+||||++++|+|||||||||+||+++|+.+.+.|+++ +++|+|+||||+++++.||+|++|++|++++.|+
T Consensus 613 SgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~ 691 (708)
T TIGR01193 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGS 691 (708)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999999985 6899999999999999999999999999999999
Q ss_pred hhHHhcCCCChhHHHHH
Q 000789 595 HDELIKDPEGPYTQLVR 611 (1283)
Q Consensus 595 ~~~l~~~~~~~~~~~~~ 611 (1283)
|+||+++ ++.|+++++
T Consensus 692 ~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 692 HDELLDR-NGFYASLIH 707 (708)
T ss_pred HHHHHhc-CCcHHHHhh
Confidence 9999987 789998874
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-84 Score=802.96 Aligned_cols=566 Identities=23% Similarity=0.328 Sum_probs=492.5
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 38 FYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFG-SSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVS 116 (1283)
Q Consensus 38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1283)
+++++++.+++++ .+++++++.++..++....|+++++++|... .................++++.++..++.+++.+
T Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (574)
T PRK11160 4 LLPFLKLYKRHWF-MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERL 82 (574)
T ss_pred hHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777776643 4567777777778888888899999999643 2110000000111122333445567788888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000789 117 CWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWF 196 (1283)
Q Consensus 117 ~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 196 (1283)
+....++++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...+..++..++.+++.++++++++|.
T Consensus 83 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (574)
T PRK11160 83 VSHDATFRVLTHLRVFTFSKLLPLSPAGLARY-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLT 161 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccChHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 197 LALVLLACLPAIVI-AGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQG 275 (1283)
Q Consensus 197 l~l~~l~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 275 (1283)
+++++++++|++++ +..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..
T Consensus 162 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (574)
T PRK11160 162 LALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQA 241 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888887655 45667788888888899999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000789 276 MVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMT-GGMSLGQTSPCLNAFAGGQAAAYKMFETIKR 354 (1283)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~ 354 (1283)
+..+...++..++..+..++++++|+++ ..|.++.|.+++++.+... ...|+..+...+..++++.++++|+.++++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~ 320 (574)
T PRK11160 242 NLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQ 320 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8888888888777777778888999988 4789999999988766543 3457777777888999999999999999987
Q ss_pred CCCCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 000789 355 KPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434 (1283)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 434 (1283)
+++.+.... .......+.|+++||+|+|+++ ++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 321 ~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I 397 (574)
T PRK11160 321 KPEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI 397 (574)
T ss_pred CCCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 765332111 1112234679999999999753 2469999999999999999999999999999999999999999999
Q ss_pred EECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCC
Q 000789 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQL 514 (1283)
Q Consensus 435 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~L 514 (1283)
++||+|+++++.+++|++|+||+|||++|++||+|||+++.|+.++++++++++.+++++|+++ |+||||.+||+|.+|
T Consensus 398 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~L 476 (574)
T PRK11160 398 LLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQL 476 (574)
T ss_pred EECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCC
Confidence 9999999999999999999999999999999999999999998999999999999999999999 999999999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecC
Q 000789 515 SGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGT 594 (1283)
Q Consensus 515 SgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~ 594 (1283)
||||||||+||||++++|+|||||||||+||+++++.+++.|.++.+++|+|+||||+++++.||+|++|++|++++.|+
T Consensus 477 SgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~ 556 (574)
T PRK11160 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGT 556 (574)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCChhHHHHH
Q 000789 595 HDELIKDPEGPYTQLVR 611 (1283)
Q Consensus 595 ~~~l~~~~~~~~~~~~~ 611 (1283)
|+||+++ ++.|+++++
T Consensus 557 ~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 557 HQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred HHHHHhc-CcHHHHHHh
Confidence 9999987 899999885
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-87 Score=739.10 Aligned_cols=554 Identities=27% Similarity=0.393 Sum_probs=470.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 000789 53 MIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAA------GTGIAAFLQVSCWMVTGERQA 126 (1283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 126 (1283)
.+.+.++..+.-+.....|.+.++++|.+..... +... ..+.++++.. +.++++-++.++|..+.+-..
T Consensus 217 v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~--~~~~---~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQytt 291 (790)
T KOG0056|consen 217 VVFCLFLLIIGRLINVSLPILSKWIVDELTAPDT--FQYS---LVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTT 291 (790)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcch--hhHH---HHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHH
Confidence 3444445555566777788899999998764321 1111 1111222222 235677788888989999999
Q ss_pred HHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHH
Q 000789 127 TRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVV-ALARGWFLALVLLACL 205 (1283)
Q Consensus 127 ~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~l~~l~~~ 205 (1283)
+++-.++|+|+..++++|+-++ ++|+++..++...+.+. ++...+.++...+.-+.++++. ...++|+.++++++++
T Consensus 292 R~ie~~lfrHlh~LSlrwHL~r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m 369 (790)
T KOG0056|consen 292 REIETELFRHLHNLSLRWHLNR-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMM 369 (790)
T ss_pred HHHHHHHHHHHHhhceeeeecc-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 9999999999999999999887 99999999988877776 5555555555555544444443 3457899999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 206 PAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVL 285 (1283)
Q Consensus 206 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (1283)
.++..+...+..+..+..+++..++.+.-+...+++-+.+|||-||+|+++.++|.+...++.+...|...-..+....-
T Consensus 370 ~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Q 449 (790)
T KOG0056|consen 370 LLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQ 449 (790)
T ss_pred HHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88887777777777777788888888888889999999999999999999999999999998888777654444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCC
Q 000789 286 MLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSG 365 (1283)
Q Consensus 286 ~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~ 365 (1283)
..+..++.+..-.+..++|..+.+|+|+.+.|..|++.+.+|+..++..+..+|+...-+++++++++++|++.+.+ +.
T Consensus 450 n~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P-~a 528 (790)
T KOG0056|consen 450 NGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP-GA 528 (790)
T ss_pred hhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC-CC
Confidence 33333334444444567778899999999999999999999999999999999999999999999999988876543 23
Q ss_pred CcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCC
Q 000789 366 ITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ 445 (1283)
Q Consensus 366 ~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~ 445 (1283)
.+....+|.|+|+||+|.|++ .+++|+||||+++||+++|+|||||+||||++++|.|||+.++|.|+|||+||++..
T Consensus 529 ~pl~~~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt 606 (790)
T KOG0056|consen 529 PPLKVTQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVT 606 (790)
T ss_pred CCccccCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHH
Confidence 344456799999999999974 568999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000789 446 LKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIA 525 (1283)
Q Consensus 446 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiA 525 (1283)
..++|++||+||||..||++||..||.|++|.+++||+.+|++.+++||-|..+|+||+|.|||||-.||||||||+|||
T Consensus 607 ~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiA 686 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIA 686 (790)
T ss_pred HHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCCh
Q 000789 526 RAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGP 605 (1283)
Q Consensus 526 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~ 605 (1283)
|+++++|.|++|||+|||||..||+.|+.++.++..+||.|+|+||++++-+||.|+|+++|+|+|.|+|+||+.+.+|.
T Consensus 687 RtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~ 766 (790)
T KOG0056|consen 687 RTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGA 766 (790)
T ss_pred HHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred hHHHHHHhhcC
Q 000789 606 YTQLVRLQEGS 616 (1283)
Q Consensus 606 ~~~~~~~~~~~ 616 (1283)
|++||+.|+..
T Consensus 767 Ya~MWq~qqa~ 777 (790)
T KOG0056|consen 767 YADMWQAQQAM 777 (790)
T ss_pred HHHHHHHHHhc
Confidence 99999877654
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-83 Score=743.93 Aligned_cols=552 Identities=26% Similarity=0.345 Sum_probs=491.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 721 GSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEK 800 (1283)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ 800 (1283)
..++..+.+++....+++++..+..++... .......+...++++.++..++.+.+......++.++...+|..++++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~--~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQ--LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777776665421 123344556667777788888999999999999999999999999999
Q ss_pred HHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000789 801 VVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQ 880 (1283)
Q Consensus 801 ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~ 880 (1283)
+.+.++.|-+. .++|+..+.+...++.++.++..+++.+..+.+..+..++..+..+|..+++++.+.|++.++++..
T Consensus 83 l~~~gp~~~~~--~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv 160 (559)
T COG4988 83 LAKLGPAFIAQ--KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV 160 (559)
T ss_pred HHhCChhhhcC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999885 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 881 TKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAF 960 (1283)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1283)
....++.+++....+...++++.+.++|+.|+|+|+..+...++..+..++.++.+++.-...-...+...++.++..++
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAl 240 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIAL 240 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887666666666667777777766
Q ss_pred HHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCccc
Q 000789 961 CFYIGSVLVEH-GKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGA 1039 (1283)
Q Consensus 961 ~~~~g~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~ 1039 (1283)
+..+.+..... |.+++...+.++....-++.|+..+.+.++....+..+.+.++.+++.+++.................
T Consensus 241 vAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~e 320 (559)
T COG4988 241 VAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIE 320 (559)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCce
Confidence 55554444455 89999999999999999999999999999999999999999999998776543322111111222335
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++|++|+||+.+ ++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+.||++++
T Consensus 321 i~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 321 ISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred eeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 66779999999653 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 000789 1120 LVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPK 1199 (1283)
Q Consensus 1120 ~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ 1199 (1283)
+|||+|++|+|||||||.+++ ++.+|++++++++++++.+|+.. |+|+||.+||+|.+|||||+|||++|||++++++
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~-~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLAR-PDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eeCCCCccccccHHHHhhccC-CcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999984 47999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhccCchhHHHHHHh
Q 000789 1200 ILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALH 1279 (1283)
Q Consensus 1200 ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~ 1279 (1283)
++|||||||+||.+||+.|++.|.++.+++|||+||||++.+++||+|+|||+|+++|.|+|++|.++ +|.|++|+.+|
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q 555 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQ 555 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 99999999987
Q ss_pred hc
Q 000789 1280 VS 1281 (1283)
Q Consensus 1280 ~~ 1281 (1283)
..
T Consensus 556 ~~ 557 (559)
T COG4988 556 EG 557 (559)
T ss_pred hc
Confidence 53
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-83 Score=823.02 Aligned_cols=565 Identities=24% Similarity=0.316 Sum_probs=498.5
Q ss_pred hhHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 36 VPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQV 115 (1283)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1283)
..++.++++.+++++ .+...++++++..+.....|++++.++|.+...... ..+...++.++++.++.+++.+++.
T Consensus 140 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~ 215 (710)
T TIGR03796 140 SLLRALWRRLRGSRG-ALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ---DWLRPLLLGMGLTALLQGVLTWLQL 215 (710)
T ss_pred ccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666543 334555556666666677788999999976533221 1122233344445566678888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000789 116 SCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGW 195 (1283)
Q Consensus 116 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 195 (1283)
++....+.++..++|.++|+|++++|+++|++. ++|++++|+++| +.+++++...+..++..++.+++.++++++++|
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 293 (710)
T TIGR03796 216 YYLRRLQIKLAVGMSARFLWHILRLPVRFFAQR-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDP 293 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-cccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999976 999999999988 689999988888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 196 FLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQG 275 (1283)
Q Consensus 196 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 275 (1283)
.+++++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||++++|+.+.++|.+...+..+...+..
T Consensus 294 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 373 (710)
T TIGR03796 294 VLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELG 373 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000789 276 MVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRK 355 (1283)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 355 (1283)
....+...+..++..+..++++++|++++.+|.+|+|.++++..+......|+.++...+..++++..+.+|+.++++.+
T Consensus 374 ~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~ 453 (710)
T TIGR03796 374 VLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNP 453 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888777777777788888899999999999999999999999999899999999999999999999999999999876
Q ss_pred CCCCCCCC---C-CCcc-cCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 000789 356 PKIDPYDT---S-GITL-EKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD 430 (1283)
Q Consensus 356 ~~~~~~~~---~-~~~~-~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~ 430 (1283)
++.+.... . ...+ +...+.|+++||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|+
T Consensus 454 ~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~ 532 (710)
T TIGR03796 454 VDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW 532 (710)
T ss_pred CccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 55322110 0 0111 2345789999999999853 357999999999999999999999999999999999999999
Q ss_pred CceEEECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCC
Q 000789 431 AGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEH 510 (1283)
Q Consensus 431 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~ 510 (1283)
+|+|++||+|+++++.+++|++||||||+|++|++||+|||.++.|++++++++++++.+++++++.++|+|+||.+||+
T Consensus 533 ~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 533 SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEe
Q 000789 511 GTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIV 590 (1283)
Q Consensus 511 g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~ 590 (1283)
|.+|||||||||+|||||+++|+|||||||||+||+++|+.+.+.|++ .++|+|+||||+++++.||+|++|++|+|+
T Consensus 613 G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999987 589999999999999999999999999999
Q ss_pred EecChhHHhcCCCChhHHHH
Q 000789 591 EKGTHDELIKDPEGPYTQLV 610 (1283)
Q Consensus 591 ~~g~~~~l~~~~~~~~~~~~ 610 (1283)
+.|+|+||+++ ++.|++++
T Consensus 691 ~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 691 QRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred EecCHHHHHHc-CCcHHHHh
Confidence 99999999987 78898876
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-83 Score=816.45 Aligned_cols=554 Identities=26% Similarity=0.320 Sum_probs=486.4
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 712 KPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIR 791 (1283)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~ 791 (1283)
++.++.+...++++++..++....+++...+++......+ ......+.++++++.++..++.+++.++....+.++..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (686)
T TIGR03797 132 RGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD--RSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDA 209 (686)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554555555444444455555555554432111 11222344455566677788889999999999999999
Q ss_pred HHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000789 792 RIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSP 871 (1283)
Q Consensus 792 ~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~p 871 (1283)
++|..+|+++++.|++||++ +++|++++|+. |++.+++++...+...+..++.+++++++++.++|+++++++++.|
T Consensus 210 ~l~~~~~~~ll~~~~~~~~~--~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 286 (686)
T TIGR03797 210 SLQAAVWDRLLRLPVSFFRQ--YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALAL 286 (686)
T ss_pred HHHHHHHHHHHcCCHHHHCC--CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999985 88999999997 7999999988888787878887888889999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHH
Q 000789 872 LMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSF 951 (1283)
Q Consensus 872 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1283)
++++..++..+..++..++..+...+..+.+.|+++|+++||+++.|+++.++|.+..++..+...+..........+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (686)
T TIGR03797 287 VAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNA 366 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888887777777778888888888999999999999999999999999999999999999998888888888777888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCC
Q 000789 952 LVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGM 1031 (1283)
Q Consensus 952 ~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~ 1031 (1283)
++..+..++++++|.+++..|.+++|.++++..+...+..|+..+...+.++..+..+.+|+.++++.+++.+... .
T Consensus 367 ~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---~ 443 (686)
T TIGR03797 367 VLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK---T 443 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc---C
Confidence 8888888899999999999999999999999999999999999999999999999999999999998765432211 1
Q ss_pred ccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCCh
Q 000789 1032 TLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKL 1111 (1283)
Q Consensus 1032 ~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~ 1111 (1283)
.+....+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.
T Consensus 444 ~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~ 522 (686)
T TIGR03797 444 DPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDV 522 (686)
T ss_pred CCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCH
Confidence 112235689999999999754 4579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIA 1191 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiA 1191 (1283)
+++|++|+||||||.+|+|||||||.+++ + ++|+++++|++.++++++|+++|+|+||.+||+|.+|||||||||+||
T Consensus 523 ~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~-~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialA 600 (686)
T TIGR03797 523 QAVRRQLGVVLQNGRLMSGSIFENIAGGA-P-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA 600 (686)
T ss_pred HHHHhccEEEccCCccCcccHHHHHhcCC-C-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999984 3 899999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhccCch
Q 000789 1192 RAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGA 1271 (1283)
Q Consensus 1192 RAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~ 1271 (1283)
||++++|+|||||||||+||++||+.|++.|++. ++|+|+||||+++++.||+|+||++|+|+|.|+|+||+++ +|.
T Consensus 601 RAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~ 677 (686)
T TIGR03797 601 RALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGL 677 (686)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcH
Confidence 9999999999999999999999999999999986 6899999999999999999999999999999999999996 899
Q ss_pred hHHHHHHh
Q 000789 1272 YASLVALH 1279 (1283)
Q Consensus 1272 y~~L~~~~ 1279 (1283)
|++|++.|
T Consensus 678 y~~l~~~q 685 (686)
T TIGR03797 678 FAQLARRQ 685 (686)
T ss_pred HHHHHHhc
Confidence 99999876
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-83 Score=736.75 Aligned_cols=552 Identities=27% Similarity=0.387 Sum_probs=488.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 56 GTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLK 135 (1283)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~ 135 (1283)
..++..+.+++...+.+++..+++.+..... ...+...+..++++.++..++.+.+.....+.+.++...+|+.+++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~ 81 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLD 81 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666777666543321 1233444555666677788888999999999999999999999999
Q ss_pred HHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000789 136 TILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSM 215 (1283)
Q Consensus 136 ~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~ 215 (1283)
++.++++.+-.+. ++|+..+.++..++.++.+++..++.++...+..+..++.+|+++|.-++++++++|++.+++..+
T Consensus 82 ~l~~~gp~~~~~~-~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv 160 (559)
T COG4988 82 KLAKLGPAFIAQK-PAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV 160 (559)
T ss_pred HHHhCChhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 216 ALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGL 295 (1283)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1283)
++..++..+++...+.++++.+-|.++|+.|+|.|+..+...+++.+..++.++..++.-++.-....++.++.+++.++
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAl 240 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIAL 240 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888888888888888777
Q ss_pred HHHH-HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcccCcccc
Q 000789 296 AVWY-GSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGE 374 (1283)
Q Consensus 296 ~~~~-g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~ 374 (1283)
+..+ |..++..|.++....+.++...--.+.|++.++..++.-+.+.++.++++.+++.+++..+.............+
T Consensus 241 vAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~e 320 (559)
T COG4988 241 VAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIE 320 (559)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCce
Confidence 6544 544443378887776666666666688999999999999999999999999998776543322110111122335
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
++.+|++|.|++.+ ++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+++++++.+.||++++
T Consensus 321 i~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 321 ISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred eeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 66669999998643 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000789 455 LVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKI 534 (1283)
Q Consensus 455 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~i 534 (1283)
||+|+|++|++||||||++++++++++++.++++.+++.+|+.. |+|+||.+||+|.+|||||+||+++||||++++++
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l 477 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL 477 (559)
T ss_pred eeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCE
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCChhHHHHHHhh
Q 000789 535 LLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQE 614 (1283)
Q Consensus 535 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 614 (1283)
+|||||||+||.+||+.|.+.|.++.+++|+|+||||+..+++||+|+|||+|+++|+|+|++|.++ +|.|++|+..|.
T Consensus 478 ~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q~ 556 (559)
T COG4988 478 LLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQE 556 (559)
T ss_pred EEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 899999998765
Q ss_pred c
Q 000789 615 G 615 (1283)
Q Consensus 615 ~ 615 (1283)
+
T Consensus 557 ~ 557 (559)
T COG4988 557 G 557 (559)
T ss_pred c
Confidence 4
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-83 Score=815.80 Aligned_cols=557 Identities=25% Similarity=0.364 Sum_probs=493.7
Q ss_pred hhHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 36 VPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQV 115 (1283)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1283)
..+++++++.+++++ .+...++++++..++....|++++.++|.+...... ..+....+.++++.++..++.+++.
T Consensus 133 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~ 208 (694)
T TIGR03375 133 RPKHWFWSTLKESWP-LYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAF---ETLWVLAIGVALAIVFDFVLKTLRS 208 (694)
T ss_pred ccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcH---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666665543 445556666677777788888999999976432211 1222233334444555677888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000789 116 SCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGW 195 (1283)
Q Consensus 116 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 195 (1283)
++..+.+.++..++|.++|+|++++|+.| +++ ++|++++|+ +|++.+++++...+...+..+..+++.++++++++|
T Consensus 209 ~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~-~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (694)
T TIGR03375 209 YFLDVAGKKADLILSAKLFERVLGLRMEA-RPA-SVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGG 285 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCC-ChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998 555 899999999 799999999988877778888878888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 196 FLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQG 275 (1283)
Q Consensus 196 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 275 (1283)
.+++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..
T Consensus 286 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 365 (694)
T TIGR03375 286 PLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSR 365 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000789 276 MVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRK 355 (1283)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 355 (1283)
........+..++..++.++++++|++++.+|.+|+|.+++++.+......|+..+...+..++.+..+.+|+.++++.+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~ 445 (694)
T TIGR03375 366 FLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLP 445 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888887877788888899999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 000789 356 PKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVL 435 (1283)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 435 (1283)
++.++.. .....+...+.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.
T Consensus 446 ~e~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 523 (694)
T TIGR03375 446 VERPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL 523 (694)
T ss_pred CCCCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 6533211 111122345689999999999753 35799999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 000789 436 IDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLS 515 (1283)
Q Consensus 436 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 515 (1283)
+||+|+++++.+++|++|+||||+|++|++||+|||.+++|++++++++++++.++++++++++|+||||.+||+|.+||
T Consensus 524 idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LS 603 (694)
T TIGR03375 524 LDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS 603 (694)
T ss_pred ECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCC
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecCh
Q 000789 516 GGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTH 595 (1283)
Q Consensus 516 gGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~ 595 (1283)
|||||||+|||||+++|+|||||||||+||+++|+.+++.|.++.+++|+|+||||+++++.||+|++|++|+|+|+|+|
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~ 683 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPK 683 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCH
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred hHHhcC
Q 000789 596 DELIKD 601 (1283)
Q Consensus 596 ~~l~~~ 601 (1283)
+||+++
T Consensus 684 ~eLl~~ 689 (694)
T TIGR03375 684 DQVLEA 689 (694)
T ss_pred HHHHHH
Confidence 999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-83 Score=817.83 Aligned_cols=564 Identities=26% Similarity=0.366 Sum_probs=491.9
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 704 MRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFG 783 (1283)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 783 (1283)
+++++.+.++.++.+...++++++..++....++++..+++...... .......+..+++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK--MMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666655555555555555555666666665543211 1111222334445556667788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000789 784 VAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILA 863 (1283)
Q Consensus 784 ~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 863 (1283)
..+.++..++|.++|+++++.|+.||++ +++|++++|++ |.+.+.+.+...+..++..++.+++.+++++.++|+++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~--~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 298 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFST--RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLF 298 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCC--CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999985 89999999998 89999998888887778888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHH
Q 000789 864 FVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILS 943 (1283)
Q Consensus 864 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1283)
+++++++|++++..++..+..++..++..+...+..+.+.|++.|+++||+++.|+.+.++|.+...+..+...+.....
T Consensus 299 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (708)
T TIGR01193 299 LLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKAD 378 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888889999999999999999999999999999999999999988888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 000789 944 GAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKI 1023 (1283)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~ 1023 (1283)
.....+..++..+..++++++|++++..|.+++|.++++..+...+..|+..+...+..+..+..+.+|+.++++.+++.
T Consensus 379 ~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 458 (708)
T TIGR01193 379 QGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEF 458 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 77777777777788888999999999999999999999999999999999999999999999999999999999876554
Q ss_pred CCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECC
Q 000789 1024 DSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDN 1103 (1283)
Q Consensus 1024 ~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG 1103 (1283)
+.... ..+.+...+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 459 ~~~~~-~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg 535 (708)
T TIGR01193 459 INKKK-RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG 535 (708)
T ss_pred ccccc-ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECC
Confidence 32211 0112234578999999999974 35799999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChh
Q 000789 1104 IELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGG 1183 (1283)
Q Consensus 1104 ~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1183 (1283)
+|+++++.+++|++|+||||||+||+|||||||.++..++++|+++++|++.++++++|+++|+||||.+||+|.+||||
T Consensus 536 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG 615 (708)
T TIGR01193 536 FSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615 (708)
T ss_pred EEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence 99999999999999999999999999999999999843578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHH
Q 000789 1184 QKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDA 1263 (1283)
Q Consensus 1184 QrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~e 1263 (1283)
|||||+||||++++|+|||||||||+||++||+.|++.|++. +++|+|+||||+++++.||+|+||++|+++|.|+|+|
T Consensus 616 QrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~ 694 (708)
T TIGR01193 616 QKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDE 694 (708)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999999985 7899999999999999999999999999999999999
Q ss_pred HHhccCchhHHHHH
Q 000789 1264 LMKITDGAYASLVA 1277 (1283)
Q Consensus 1264 Ll~~~~g~y~~L~~ 1277 (1283)
|+++ +|.|++|++
T Consensus 695 L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 695 LLDR-NGFYASLIH 707 (708)
T ss_pred HHhc-CCcHHHHhh
Confidence 9996 899999986
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-82 Score=793.78 Aligned_cols=567 Identities=31% Similarity=0.495 Sum_probs=498.8
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 37 PFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVS 116 (1283)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1283)
.+++++++.+++++. ++..+++.++..++....|++++.++|.....+.. ..+....+.++++.++..++.++..+
T Consensus 12 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~ 87 (582)
T PRK11176 12 TFRRLWPTIAPFKAG-LIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR---SVLKWMPLVVIGLMILRGITSFISSY 87 (582)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777665443 44555666666666677788889899876432211 11112222333445566677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000789 117 CWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWF 196 (1283)
Q Consensus 117 ~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 196 (1283)
+..+.+.++..++|..+++++++.|+++|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.
T Consensus 88 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (582)
T PRK11176 88 CISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999876 99999999999999999999998999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 197 LALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGM 276 (1283)
Q Consensus 197 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 276 (1283)
+++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+
T Consensus 167 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T PRK11176 167 LSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000789 277 VSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKP 356 (1283)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 356 (1283)
...+...+..++..+..++++++|++.+..|.+++|.+++++.++.....|+..+...+..++++..+.+|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~ 326 (582)
T PRK11176 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQ 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88877777777777777788899999999999999999999888888889999999999999999999999999998654
Q ss_pred CCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 000789 357 KIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLI 436 (1283)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 436 (1283)
+.+... ...++..+.|+++||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 327 ~~~~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i 402 (582)
T PRK11176 327 EKDEGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILL 402 (582)
T ss_pred cCCCCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEE
Confidence 422111 1122234579999999999753 357999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 000789 437 DGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKEN-ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLS 515 (1283)
Q Consensus 437 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 515 (1283)
||+|+++++.+++|++|+||||||++|++||+|||.+|+++ .++++++++++.++++++++++|+|+||.+||+|.+||
T Consensus 403 ~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LS 482 (582)
T PRK11176 403 DGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 482 (582)
T ss_pred CCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCC
Confidence 99999999999999999999999999999999999999764 68999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecCh
Q 000789 516 GGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTH 595 (1283)
Q Consensus 516 gGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~ 595 (1283)
|||||||+|||||+++|+|||||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|+|+|.|+|
T Consensus 483 GGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~ 562 (582)
T PRK11176 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTH 562 (582)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred hHHhcCCCChhHHHHHHh
Q 000789 596 DELIKDPEGPYTQLVRLQ 613 (1283)
Q Consensus 596 ~~l~~~~~~~~~~~~~~~ 613 (1283)
++|+++ ++.|++++..|
T Consensus 563 ~~l~~~-~~~y~~l~~~~ 579 (582)
T PRK11176 563 AELLAQ-NGVYAQLHKMQ 579 (582)
T ss_pred HHHHhC-CChHHHHHHHH
Confidence 999987 78999998755
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-82 Score=812.73 Aligned_cols=562 Identities=23% Similarity=0.337 Sum_probs=485.8
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 705 RRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGV 784 (1283)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 784 (1283)
++++.+.++.++.+...++++++..++....+++...+++......+ ......+..+++++.++..++.+++.++...
T Consensus 143 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (710)
T TIGR03796 143 RALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR--QDWLRPLLLGMGLTALLQGVLTWLQLYYLRR 220 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555444444444444333333444444444443322111 1112223444555566777888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000789 785 AGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAF 864 (1283)
Q Consensus 785 ~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l 864 (1283)
.+.++..++|..+|+++++.|++||++ +++|++++|+..| +.+++++...+..++..++.+++.+++++.++|++++
T Consensus 221 ~~~~~~~~l~~~~~~~ll~l~~~~~~~--~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 297 (710)
T TIGR03796 221 LQIKLAVGMSARFLWHILRLPVRFFAQ--RHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTL 297 (710)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcC--CcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999985 8999999999988 6899999888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHH
Q 000789 865 VILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSG 944 (1283)
Q Consensus 865 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1283)
++++++|++++..++..+..++..++..+...+..+.+.|++.|+++||+++.|+.+.++|.+...+..+...+......
T Consensus 298 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (710)
T TIGR03796 298 IGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQ 377 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888777777778888888889999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 000789 945 AGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKID 1024 (1283)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 1024 (1283)
....+..++..+..++++++|++++..|.+++|.++++..+...+..|+..+...+.++..+..+.+|+.++++.+++..
T Consensus 378 ~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 457 (710)
T TIGR03796 378 ILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPL 457 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 77788888888888899999999999999999999999999999999999999999999999999999999998765543
Q ss_pred CCCC---c-CCcc-CCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceE
Q 000789 1025 SSKD---E-GMTL-SSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099 (1283)
Q Consensus 1025 ~~~~---~-~~~~-~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I 1099 (1283)
.... . ...+ +...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I 536 (710)
T TIGR03796 458 LEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEI 536 (710)
T ss_pred cccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 2210 0 0111 2345789999999999854 4579999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCC
Q 000789 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQ 1179 (1283)
Q Consensus 1100 ~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~ 1179 (1283)
++||+|+++++.+++|++|+||||||.+|+|||||||.++. ++++|+++++|++.++++++|.++|+||||.+||+|.+
T Consensus 537 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~-~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~ 615 (710)
T TIGR03796 537 LFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWD-PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGAN 615 (710)
T ss_pred EECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCC-CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCC
Confidence 99999999999999999999999999999999999999984 46899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEec
Q 000789 1180 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQG 1259 (1283)
Q Consensus 1180 LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~G 1259 (1283)
||||||||||||||++++|+|||||||||+||++||+.|.+.|++ .++|+|+||||+++++.||+|+||++|+|+|.|
T Consensus 616 LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G 693 (710)
T TIGR03796 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRG 693 (710)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999999999987 489999999999999999999999999999999
Q ss_pred ChHHHHhccCchhHHHH
Q 000789 1260 SHDALMKITDGAYASLV 1276 (1283)
Q Consensus 1260 t~~eLl~~~~g~y~~L~ 1276 (1283)
+|+||+++ +|.|++|+
T Consensus 694 ~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 694 THEELWAV-GGAYARLI 709 (710)
T ss_pred CHHHHHHc-CCcHHHHh
Confidence 99999996 89999987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-82 Score=784.95 Aligned_cols=564 Identities=24% Similarity=0.303 Sum_probs=480.3
Q ss_pred HHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 706 RLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDK--LRKDSRFWALIYLVLGIINLIAVPFQNYFFG 783 (1283)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 783 (1283)
+++++.++.++.+.+++++..+..++.....++++..++........ .......+...+.++.++..++.+++.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (574)
T PRK11160 6 PFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSH 85 (574)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667677776666666655555555555555543211110 0000111222344556677788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000789 784 VAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILA 863 (1283)
Q Consensus 784 ~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 863 (1283)
..+.++..++|.++|+++++.|+.||++ +++|++++|+++|++.++.++...+..++..++.+++++++++.++|+++
T Consensus 86 ~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 86 DATFRVLTHLRVFTFSKLLPLSPAGLAR--YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhccChHhhcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999995 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHH
Q 000789 864 FVILAVSPLMLV-QGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGIL 942 (1283)
Q Consensus 864 lv~l~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1283)
+++++++|++.+ ..++..+..+...++.++...+..+.+.|.++|+++||+|+.++.+.++|.+..++..+...+....
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887777654 3455566666677778888889999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 000789 943 SGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTI-SALGVSQTSAMAPDTTKAKDSAASIFEILDSKP 1021 (1283)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 1021 (1283)
.+....+..++..+..++++++|.+++ .|.++.|.+++++.+... ...++..+......+.++..+.+|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 877777777777777788889998884 788999998887665433 345777778888899999999999999998766
Q ss_pred CCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEE
Q 000789 1022 KIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLL 1101 (1283)
Q Consensus 1022 ~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~i 1101 (1283)
+.+..... ..+...+.|+|+||+|+|++. +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 323 ~~~~~~~~--~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i 399 (574)
T PRK11160 323 EVTFPTTS--TAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILL 399 (574)
T ss_pred CCCCCccc--CCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 53221111 112234679999999999853 346999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCC
Q 000789 1102 DNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLS 1181 (1283)
Q Consensus 1102 dG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1181 (1283)
||+|+++++.+++|++|+||||||++|++||+|||.++. ++++|++++++++.+++++++++ |+||||.+||+|.+||
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LS 477 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAA-PNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLS 477 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCC-CccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCC
Confidence 999999999999999999999999999999999999984 46899999999999999999999 9999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecCh
Q 000789 1182 GGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSH 1261 (1283)
Q Consensus 1182 gGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~ 1261 (1283)
||||||||||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|
T Consensus 478 gGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~ 557 (574)
T PRK11160 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTH 557 (574)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHhccCchhHHHHHH
Q 000789 1262 DALMKITDGAYASLVAL 1278 (1283)
Q Consensus 1262 ~eLl~~~~g~y~~L~~~ 1278 (1283)
+||+++ +|.|++||+.
T Consensus 558 ~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 558 QELLAQ-QGRYYQLKQR 573 (574)
T ss_pred HHHHhc-CcHHHHHHhh
Confidence 999996 9999999864
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-81 Score=799.16 Aligned_cols=567 Identities=26% Similarity=0.401 Sum_probs=502.3
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 37 PFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVS 116 (1283)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1283)
.+.+++++.+++++ .+...++++++..++....|++++.++|.+..... ...+...++.++++.++..++.+++.+
T Consensus 126 ~~~~~~~~~~~~~~-~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~---~~~l~~l~~~~~~~~~~~~~~~~l~~~ 201 (694)
T TIGR01846 126 GFSWFIPAIIRYRK-QFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG---LSTLSVLALAMLAVAIFEPALGGLRTY 201 (694)
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666665543 34455666666666777788899999998653221 122233344445555667788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000789 117 CWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWF 196 (1283)
Q Consensus 117 ~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 196 (1283)
+....+.++..++|.++|+|++++|+.+|++. ++|++++|+ +|++.+++++...+..++..+..+++.++++++++|.
T Consensus 202 ~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~-~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 279 (694)
T TIGR01846 202 LFAHLTSRIDVELGARLYRHLLGLPLGYFESR-RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPT 279 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCC-CHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986 999999999 6999999998887777777777677778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 197 LALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGM 276 (1283)
Q Consensus 197 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 276 (1283)
+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|.+..++..+...+..+
T Consensus 280 l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 359 (694)
T TIGR01846 280 LTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTN 359 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888999998888888899999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000789 277 VSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKP 356 (1283)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 356 (1283)
..+....+..++..+..++++|+|++++.+|.+|+|.++++.++......|+..+...+..++++..+.+|+.++++.++
T Consensus 360 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 439 (694)
T TIGR01846 360 LGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPT 439 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888887778888888888999999999999999999999999988999999999999999999999999999998765
Q ss_pred CCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 000789 357 KIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLI 436 (1283)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 436 (1283)
+.+... ....+...+.|+++||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 440 e~~~~~--~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~i 516 (694)
T TIGR01846 440 EPRSAG--LAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLV 516 (694)
T ss_pred CccCCC--CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 532211 11122345789999999999743 346999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 000789 437 DGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSG 516 (1283)
Q Consensus 437 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 516 (1283)
||+|+++++.+++|++|+||+|++++|++||+|||.++.|+.++++++++|+.++++++++++|+|+||.+|++|.+|||
T Consensus 517 dg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSg 596 (694)
T TIGR01846 517 DGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSG 596 (694)
T ss_pred CCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChh
Q 000789 517 GQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHD 596 (1283)
Q Consensus 517 GqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 596 (1283)
|||||++|||||+++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|++.|+|+
T Consensus 597 Gq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~ 676 (694)
T TIGR01846 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHE 676 (694)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHh
Q 000789 597 ELIKDPEGPYTQLVRLQ 613 (1283)
Q Consensus 597 ~l~~~~~~~~~~~~~~~ 613 (1283)
||+++ ++.|++++..|
T Consensus 677 ~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 677 ELLAL-QGLYARLWQQQ 692 (694)
T ss_pred HHHHc-CChHHHHHHhh
Confidence 99987 79999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-81 Score=784.92 Aligned_cols=568 Identities=25% Similarity=0.355 Sum_probs=482.5
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 37 PFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVS 116 (1283)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1283)
.+++++.+.+++++ .+++.+++.++..++.+..|++++.++|.+........ .....+++.++++.++..++.++..+
T Consensus 10 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (592)
T PRK10790 10 TLKRLLAYGSPWRK-PLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLAAGLHYAQSL 87 (592)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666655544 44566777777788888889999999997643211111 11111222233344456677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000789 117 CWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWF 196 (1283)
Q Consensus 117 ~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 196 (1283)
.....+.++..++|.++|+++++.|+++|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (592)
T PRK10790 88 LFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQ-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWR 166 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999986 99999999999999999999999888999988888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 197 LALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGM 276 (1283)
Q Consensus 197 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 276 (1283)
+++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+...
T Consensus 167 l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (592)
T PRK10790 167 MALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLR 246 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888887777888888888888888889999999999999999999999999999999988888777776666
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000789 277 VSGIG-LGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRK 355 (1283)
Q Consensus 277 ~~~~~-~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 355 (1283)
..+.. .++..++..+...+++++++. +..|.+++|.+++++.+......|+..+...+..++++..+++|+.++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~ 325 (592)
T PRK10790 247 LDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGP 325 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55443 223333332222222233333 5789999999999999998889999999999999999999999999999865
Q ss_pred CCCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 000789 356 PKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVL 435 (1283)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 435 (1283)
++..... ..+...++|+++||+|+|++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.
T Consensus 326 ~~~~~~~----~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 326 RQQYGND----DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred CccCCCC----ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 4321111 11223467999999999974 24699999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 000789 436 IDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLS 515 (1283)
Q Consensus 436 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 515 (1283)
+||+|+++++.+++|++|+||||||++|++||+|||++++ ++++++++++++.++++++++++|+|+||.+||+|.+||
T Consensus 400 idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LS 478 (592)
T PRK10790 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478 (592)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCC
Confidence 9999999999999999999999999999999999999998 688999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecCh
Q 000789 516 GGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTH 595 (1283)
Q Consensus 516 gGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~ 595 (1283)
|||||||+|||||+++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus 479 GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~ 558 (592)
T PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTH 558 (592)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred hHHhcCCCChhHHHHHHhhcC
Q 000789 596 DELIKDPEGPYTQLVRLQEGS 616 (1283)
Q Consensus 596 ~~l~~~~~~~~~~~~~~~~~~ 616 (1283)
+||+++ ++.|+++++.+...
T Consensus 559 ~~L~~~-~~~y~~l~~~~~~~ 578 (592)
T PRK10790 559 QQLLAA-QGRYWQMYQLQLAG 578 (592)
T ss_pred HHHHhC-CCHHHHHHHHHhhh
Confidence 999987 79999999876443
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-81 Score=786.43 Aligned_cols=511 Identities=34% Similarity=0.529 Sum_probs=466.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000789 764 YLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQ 843 (1283)
Q Consensus 764 ~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~ 843 (1283)
++++.++..++.++..++..+.+.+....+|..+|+++++.|.++|++ .++|++++|+++|++.+.+.+...+..++.
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~ 148 (582)
T PRK11176 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVR 148 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677788888888999999999999999999999999999985 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHH
Q 000789 844 NIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMD 923 (1283)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~ 923 (1283)
.++.+++.+++++.++|++++++++++|+.++......+..++..++.++...+..+.+.|.++|+++||+++.++.+.+
T Consensus 149 ~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~ 228 (582)
T PRK11176 149 EGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETK 228 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHH
Confidence 99999999999999999999999998888888877777777777788888888899999999999999999999999999
Q ss_pred HHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 924 LYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDT 1003 (1283)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1283)
+|.+..++..+...+..........+...+..+...+++++|++++..|.+++|.++++..+......|+..+...+..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~ 308 (582)
T PRK11176 229 RFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQF 308 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888877777777777777788888899999999999999999999888888999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHH
Q 000789 1004 TKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKST 1083 (1283)
Q Consensus 1004 ~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKST 1083 (1283)
..+..+.+|+.++++.+++.+... ...+...+.|+++||+|+|+++ ++++|+|+||+|+|||++||||+|||||||
T Consensus 309 ~~~~~~~~ri~~~~~~~~~~~~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKST 384 (582)
T PRK11176 309 QRGMAACQTLFAILDLEQEKDEGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKST 384 (582)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHH
Confidence 999999999999987654422111 1112234579999999999854 457999999999999999999999999999
Q ss_pred HHHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHH
Q 000789 1084 VIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFIS 1163 (1283)
Q Consensus 1084 L~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~ 1163 (1283)
|+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|++||||||.++.+++++|++++++++.++++++++
T Consensus 385 Ll~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~ 464 (582)
T PRK11176 385 IANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFIN 464 (582)
T ss_pred HHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998544589999999999999999999
Q ss_pred hCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh
Q 000789 1164 ALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN 1243 (1283)
Q Consensus 1164 ~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~ 1243 (1283)
++|+|+||.+||+|.+|||||||||+||||++++|+|||||||||+||++||+.|.+.|.+..++||+|+||||+++++.
T Consensus 465 ~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~ 544 (582)
T PRK11176 465 KMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK 544 (582)
T ss_pred hcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred cCEEEEEeCCEEEEecChHHHHhccCchhHHHHHHhhc
Q 000789 1244 ADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVS 1281 (1283)
Q Consensus 1244 ~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~~~ 1281 (1283)
||+|++|++|+|+|.|+|++|+++ ++.|++|++.|..
T Consensus 545 ~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~~~~ 581 (582)
T PRK11176 545 ADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQFG 581 (582)
T ss_pred CCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHHHHhc
Confidence 999999999999999999999996 8999999987753
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-84 Score=716.22 Aligned_cols=503 Identities=29% Similarity=0.425 Sum_probs=429.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 771 NLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAA 850 (1283)
Q Consensus 771 ~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~ 850 (1283)
.+++..++++++..+.+...+++--++|+|+..+++.|+-+ +.+|+++.-..+..+.+. ++.....++...++-+.+
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~--rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~v 348 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLN--RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGV 348 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeec--ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhh
Confidence 45677788888888999999999999999999999999985 678998887777776665 555555555555554444
Q ss_pred HHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHH
Q 000789 851 GLIIA-FTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKC 929 (1283)
Q Consensus 851 ~~~~~-~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~ 929 (1283)
+++.. ..++|+.+++++.+..+++.......-...+..|+......+......+++-+.+|||-|+.|++..++|.+..
T Consensus 349 a~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAi 428 (790)
T KOG0056|consen 349 AMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAI 428 (790)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHH
Confidence 44443 35789999988888877776655444334444556666667778888999999999999999999999999999
Q ss_pred hcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 930 EGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDS 1009 (1283)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 1009 (1283)
..+++..++....-.........+..+..+....+..+++..+..++|+++.+..++....+|+.........+++...-
T Consensus 429 l~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiD 508 (790)
T KOG0056|consen 429 LKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFID 508 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhh
Confidence 99998877754433222222222222333333334455667899999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHh
Q 000789 1010 AASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIE 1089 (1283)
Q Consensus 1010 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1089 (1283)
+|+++++++++++..+.+ ...+....+|.|+|+||+|.|. |.+|+|+||||+++||+.+|+|||||+||||++++|+
T Consensus 509 mEnmfdllkee~eVvd~P-~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf 585 (790)
T KOG0056|consen 509 MENMFDLLKEEPEVVDLP-GAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF 585 (790)
T ss_pred HHHHHHHhhcCchhhcCC-CCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHH
Confidence 999999999888765322 1122233678999999999997 4578999999999999999999999999999999999
Q ss_pred ccCCCCcceEEECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCc
Q 000789 1090 RFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGY 1169 (1283)
Q Consensus 1090 rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gl 1169 (1283)
||||.++|+|+|||+||+++..++||++||+||||..||+.||.+||.|++ +.+++||+.+|++.|++||-|.++|+||
T Consensus 586 Rffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak-~~AsneevyaAAkAA~IHdrIl~fPegY 664 (790)
T KOG0056|consen 586 RFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAK-PSASNEEVYAAAKAAQIHDRILQFPEGY 664 (790)
T ss_pred HHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecC-CCCChHHHHHHHHHhhHHHHHhcCchhh
Confidence 999999999999999999999999999999999999999999999999994 5899999999999999999999999999
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEE
Q 000789 1170 ETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAV 1249 (1283)
Q Consensus 1170 dt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~v 1249 (1283)
+|.|||+|-.||||||||+||||++|++|.|++|||||||||..||+.||.+|.+..+++|.|+|||||||+.+||.|+|
T Consensus 665 ~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILv 744 (790)
T KOG0056|consen 665 NTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILV 744 (790)
T ss_pred hhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCEEEEecChHHHHhccCchhHHHHHHhh
Q 000789 1250 VKNGVIAEQGSHDALMKITDGAYASLVALHV 1280 (1283)
Q Consensus 1250 l~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~~ 1280 (1283)
+++|+|+|.|+|+||+++.+|.|++||+.|+
T Consensus 745 i~~G~IvErG~HeeLl~rdgG~Ya~MWq~qq 775 (790)
T KOG0056|consen 745 ISNGRIVERGRHEELLKRDGGAYADMWQAQQ 775 (790)
T ss_pred EeCCeEeecCcHHHHHhccCCcHHHHHHHHH
Confidence 9999999999999999988999999997653
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-81 Score=713.42 Aligned_cols=571 Identities=26% Similarity=0.380 Sum_probs=477.9
Q ss_pred hhHHHHHHhhchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCchhhHHHHHHHHHHHHHHHHHHHH
Q 000789 36 VPFYKLFAFADKQD----AVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGS--SDRSHVVHEVSKVAVKFLYLAAGTGI 109 (1283)
Q Consensus 36 ~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (1283)
...+.+..|..++. +..++.++++.+.+.......|.+++.++|.+.. ..+ .........+..+.++.++..+
T Consensus 11 ~~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~-a~~~~~~~~~~~y~iar~~s~~ 89 (591)
T KOG0057|consen 11 KILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNP-AVLSTITALLAGYGIARLGSSV 89 (591)
T ss_pred HHHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCc-chhhhhhHHHHHHHHHHHHHHH
Confidence 34555665554432 2334445555555677888888999999998742 122 1122223334556666777889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 000789 110 AAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGF-V 188 (1283)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~-~ 188 (1283)
++.++...+.++.+++.++.-.++|.|++.+++++|.+. .+|++.+.+..-...|..++...+..++..++-+.... .
T Consensus 90 F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~-~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~ 168 (591)
T KOG0057|consen 90 FNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSR-GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGI 168 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCC-CcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887 99999999999999999998887777777765544333 3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHH
Q 000789 189 VALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAY 268 (1283)
Q Consensus 189 ~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 268 (1283)
+..-.++..+++.+..+..+..+......+..+..++..++.+.....+-|.+.+..+||+||.|+++.++|.....++.
T Consensus 169 l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~ 248 (591)
T KOG0057|consen 169 LYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYE 248 (591)
T ss_pred HHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 33445666666666666666666666666666677778888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 269 RAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKM 348 (1283)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri 348 (1283)
+...+.....++....-..+..+..+.+.+.|..-+.++.+|.|.++.......++..|+..+...+..+.++..-+.-.
T Consensus 249 ~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~ 328 (591)
T KOG0057|consen 249 RAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTL 328 (591)
T ss_pred HhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHH
Confidence 99888777776666555555556666777778888889999999999888888888889999888888887777766666
Q ss_pred HHHHccCCCCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q 000789 349 FETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 349 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 428 (1283)
+...+....+.+ ...++...++.|+|+||+|+|++ ++++|+++||+|++||++||||+|||||||++++|.||++
T Consensus 329 ~~l~~~~~~i~~---~~~~i~~~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d 403 (591)
T KOG0057|consen 329 FILLEVDEDIQE---AALPIELFGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD 403 (591)
T ss_pred Hhhhhhhhhhhh---ccCCcccCCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 655443222211 11233345678999999999974 4569999999999999999999999999999999999999
Q ss_pred CCCceEEECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcccccc
Q 000789 429 PDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAG 508 (1283)
Q Consensus 429 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~ 508 (1283)
++|+|+|||+|+++++++++|+.|||||||..||++||.+||.||++.++++++.++|+.+++||-+.++|+||+|.+|
T Consensus 404 -~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 404 -YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred -cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCE
Q 000789 509 EHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGK 588 (1283)
Q Consensus 509 ~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~ 588 (1283)
|+|..|||||||||+||||+++||||++||||||+||.+||+.+.+.+.+...+||+|+|.||++++++||+|+++++|+
T Consensus 483 erG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~ 562 (591)
T KOG0057|consen 483 ERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGT 562 (591)
T ss_pred hcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCe
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred EeEecChhHHhcCCCChhHHHHHHhhc
Q 000789 589 IVEKGTHDELIKDPEGPYTQLVRLQEG 615 (1283)
Q Consensus 589 i~~~g~~~~l~~~~~~~~~~~~~~~~~ 615 (1283)
+.|.|+|+||++ +.+.|.++|..|..
T Consensus 563 v~e~gth~ell~-~s~~~~~~w~~~~~ 588 (591)
T KOG0057|consen 563 VKEYGTHSELLA-PSELYADLWTTQTS 588 (591)
T ss_pred eEEeccHHHHhh-hhhHHHHHhccccc
Confidence 999999999999 58999999976643
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-81 Score=799.29 Aligned_cols=553 Identities=26% Similarity=0.403 Sum_probs=480.2
Q ss_pred HHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 706 RLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVA 785 (1283)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 785 (1283)
+++.+.++.++.+....+++++..++....++++..+++......+ ......+..+++++.++..++.+++.++..+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (694)
T TIGR03375 137 WFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA--FETLWVLAIGVALAIVFDFVLKTLRSYFLDVA 214 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555444444444444444455555555554332111 11122233344445566778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000789 786 GGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFV 865 (1283)
Q Consensus 786 ~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv 865 (1283)
+.++..++|..+|+++++.|++| + ++++|++++|+ +|++.+++++...+...+..++.+++.++++++++|+++++
T Consensus 215 ~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 215 GKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999998 4 37899999999 79999999998888888888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHH
Q 000789 866 ILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGA 945 (1283)
Q Consensus 866 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1283)
+++.+|++++..++..+..++..++..+...+..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+.......
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888899999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 000789 946 GFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDS 1025 (1283)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~ 1025 (1283)
...+...+..+..++++++|++++..|.+++|.++++..+...+..|+..+...+.++..+..+.+|+.++++.+++.+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 88888888888888899999999999999999999999999999999999999999999999999999999987665322
Q ss_pred CCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCcc
Q 000789 1026 SKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIE 1105 (1283)
Q Consensus 1026 ~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~d 1105 (1283)
.. .....+...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|
T Consensus 451 ~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 528 (694)
T TIGR03375 451 GT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD 528 (694)
T ss_pred CC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 11 111122345689999999999753 4579999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1106 LPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1106 i~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
+++++.+++|++|+||||||++|+|||+|||.+++ ++++++++++|++.++++++|+++|+||||.+||+|.+||||||
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQr 607 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGA-PYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQR 607 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCC-CCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHH
Confidence 99999999999999999999999999999999984 46899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
|||+||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||+++++.||+|+||++|+|+|+|+|+||+
T Consensus 608 QRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 608 QAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999998
Q ss_pred hc
Q 000789 1266 KI 1267 (1283)
Q Consensus 1266 ~~ 1267 (1283)
++
T Consensus 688 ~~ 689 (694)
T TIGR03375 688 EA 689 (694)
T ss_pred HH
Confidence 75
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-80 Score=781.90 Aligned_cols=565 Identities=26% Similarity=0.357 Sum_probs=474.7
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 705 RRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGV 784 (1283)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 784 (1283)
+++..+.++.++.+.+..++.++...+....++++..+++..+...+........+.++++++.++..++.+++.++...
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (592)
T PRK10790 12 KRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNR 91 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666666666666666666667766665442211100111112333445555677778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000789 785 AGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAF 864 (1283)
Q Consensus 785 ~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l 864 (1283)
.+.+...++|.++|+++++.|.+||++ +++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|++++
T Consensus 92 ~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 169 (592)
T PRK10790 92 AAVGVVQQLRTDVMDAALRQPLSAFDT--QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMAL 169 (592)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999985 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHH
Q 000789 865 VILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSG 944 (1283)
Q Consensus 865 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1283)
++++++|++++......+..+...++..+...+....+.|.+.|+++||+|+.++.+.++|.+..++..+...+.....+
T Consensus 170 i~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (592)
T PRK10790 170 VAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDG 249 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888877777666766777777777788889999999999999999999999999999988887776666555444
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 000789 945 AG-FGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKI 1023 (1283)
Q Consensus 945 ~~-~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~ 1023 (1283)
.. ..+..++..+...+++++++. +..|.+++|.++++..+...+..|+..+...+..+..+..+.+|+.++++.+++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 328 (592)
T PRK10790 250 FLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ 328 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 32 222233333222222233333 5789999999999999999999999999999999999999999999999765432
Q ss_pred CCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECC
Q 000789 1024 DSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDN 1103 (1283)
Q Consensus 1024 ~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG 1103 (1283)
... . ..+...+.|+|+||+|+||+ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||
T Consensus 329 ~~~--~--~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 402 (592)
T PRK10790 329 YGN--D--DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG 402 (592)
T ss_pred CCC--C--ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 111 1 11223467999999999984 34699999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChh
Q 000789 1104 IELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGG 1183 (1283)
Q Consensus 1104 ~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1183 (1283)
+|+++++.+++|++|+||||||.+|++||||||+++. +++|++++++++.++++++++++|+||||.+||+|.+||||
T Consensus 403 ~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGG 480 (592)
T PRK10790 403 RPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVG 480 (592)
T ss_pred EEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHH
Confidence 9999999999999999999999999999999999984 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHH
Q 000789 1184 QKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDA 1263 (1283)
Q Consensus 1184 QrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~e 1263 (1283)
|||||||||||+++|+|||||||||+||++||+.|++.|++..++||+|+||||+++++.||+|++|++|+++|.|+|+|
T Consensus 481 qrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~ 560 (592)
T PRK10790 481 QKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQ 560 (592)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHhccCchhHHHHHHhhc
Q 000789 1264 LMKITDGAYASLVALHVS 1281 (1283)
Q Consensus 1264 Ll~~~~g~y~~L~~~~~~ 1281 (1283)
|+++ ++.|++|++.|..
T Consensus 561 L~~~-~~~y~~l~~~~~~ 577 (592)
T PRK10790 561 LLAA-QGRYWQMYQLQLA 577 (592)
T ss_pred HHhC-CCHHHHHHHHHhh
Confidence 9996 8999999987754
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-80 Score=775.22 Aligned_cols=565 Identities=33% Similarity=0.511 Sum_probs=506.2
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 39 YKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCW 118 (1283)
Q Consensus 39 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (1283)
++++++.++++ ..++++++++++.+++.+..|++++.++|........ ..+......++++.++.+++.++..++.
T Consensus 3 ~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 78 (571)
T TIGR02203 3 RRLWSYVRPYK-AGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDR---SVLWWVPLVVIGLAVLRGICSFVSTYLL 78 (571)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555543 4567777788888888888899999999865432211 1222233344555666778888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000789 119 MVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLA 198 (1283)
Q Consensus 119 ~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 198 (1283)
.+.+.++..++|..+++++++.|.++|++. +.|++++|+++|++.+++++...+..++..++.+++.++++++++|.++
T Consensus 79 ~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~ 157 (571)
T TIGR02203 79 SWVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLT 157 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999876 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 199 LVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVS 278 (1283)
Q Consensus 199 l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (1283)
+++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.++.++.+.++|.+..++..+...+.....
T Consensus 158 ~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (571)
T TIGR02203 158 LIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAG 237 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 000789 279 GIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKI 358 (1283)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 358 (1283)
+....+..++..+..++++++|++++.+|.+|+|.++++..++.....|+..+...+..+++++.+.+|+.++++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (571)
T TIGR02203 238 SISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEK 317 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 88887777777788888889999999999999999999999999999999999999999999999999999999876553
Q ss_pred CCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECC
Q 000789 359 DPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDG 438 (1283)
Q Consensus 359 ~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 438 (1283)
+... ....+..+.|+++||+|+|+++ +.++|+|+||+|++||+++|+|+||||||||+++|+|+|+|++|+|++||
T Consensus 318 ~~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g 393 (571)
T TIGR02203 318 DTGT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG 393 (571)
T ss_pred CCCC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC
Confidence 2211 1112234679999999999754 35799999999999999999999999999999999999999999999999
Q ss_pred cccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 000789 439 IDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKE-NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGG 517 (1283)
Q Consensus 439 ~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 517 (1283)
+|+++++.+++|++|+||||+|++|++|++|||.++.+ +.++++++++++.+++++++.++|+|+||.+||+|.+||||
T Consensus 394 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 394 HDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred EeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 99999999999999999999999999999999999986 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhH
Q 000789 518 QKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDE 597 (1283)
Q Consensus 518 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~ 597 (1283)
|||||+||||++++|+|||||||||+||+++++.+.+.|.+..+++|+|+||||++.++.||+|++|++|++++.|+|++
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhcCCCChhHHHHHHh
Q 000789 598 LIKDPEGPYTQLVRLQ 613 (1283)
Q Consensus 598 l~~~~~~~~~~~~~~~ 613 (1283)
++++ ++.|++++..+
T Consensus 554 l~~~-~~~~~~~~~~~ 568 (571)
T TIGR02203 554 LLAR-NGLYAQLHNMQ 568 (571)
T ss_pred HHHc-CCHHHHHHHHh
Confidence 9987 67888877644
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-80 Score=772.83 Aligned_cols=567 Identities=27% Similarity=0.384 Sum_probs=488.0
Q ss_pred hhHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 36 VPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQV 115 (1283)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1283)
..+++++++.++++ ..+.+.+++.++..++.+..|++++.++|.+.... . .....+.++++.++..+..++..
T Consensus 5 ~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~ 77 (588)
T PRK13657 5 RLYARVLQYLGAEK-RLGILLAVANVLLAAATFAEPILFGRIIDAISGKG--D----IFPLLAAWAGFGLFNIIAGVLVA 77 (588)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--c----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777776553 34556666777777777888889999999865421 1 11112222222333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000789 116 SCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGW 195 (1283)
Q Consensus 116 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 195 (1283)
++..+...++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+.+.+...+..++..++.+++.++++++++|
T Consensus 78 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (588)
T PRK13657 78 RHADRLAHRRRLAVLTEYFERIIQLPLAWHSQR-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNW 156 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666777799999999999999876 9999999999999999988888888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 196 FLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQG 275 (1283)
Q Consensus 196 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 275 (1283)
.+++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||.|+.++.+.++|.+..++..+...+..
T Consensus 157 ~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (588)
T PRK13657 157 RLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVL 236 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888998888888889999999999999999999999999999999999999999888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000789 276 MVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRK 355 (1283)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 355 (1283)
...+....+..++..+..++++++|++++.+|.+|+|.+++++.++.....|+..+...+..+..+..+.+|+.++++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~ 316 (588)
T PRK13657 237 SWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAV 316 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77777777777777777778889999999999999999999999888888999999999999999999999999998865
Q ss_pred CCCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 000789 356 PKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVL 435 (1283)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 435 (1283)
++.+... .........+.|+++||+|+|+++ .++|+|+||+++|||+++|+|+||||||||+++|+|+|+|++|+|.
T Consensus 317 ~~~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 317 PDVRDPP-GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred cccCCCC-CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 4422111 111112234579999999999743 4699999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 000789 436 IDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLS 515 (1283)
Q Consensus 436 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 515 (1283)
+||+|+++++.+++|++|+||||+|++|++||+|||++++|+.++++++++++.+++++++.++|+|+||.+|++|.+||
T Consensus 394 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LS 473 (588)
T PRK13657 394 IDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLS 473 (588)
T ss_pred ECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCC
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecCh
Q 000789 516 GGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTH 595 (1283)
Q Consensus 516 gGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~ 595 (1283)
|||||||+|||||+++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~ 553 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSF 553 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999998788999999999999999999999999999999999
Q ss_pred hHHhcCCCChhHHHHHHhh
Q 000789 596 DELIKDPEGPYTQLVRLQE 614 (1283)
Q Consensus 596 ~~l~~~~~~~~~~~~~~~~ 614 (1283)
++|++. ++.|++++..+.
T Consensus 554 ~~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 554 DELVAR-GGRFAALLRAQG 571 (588)
T ss_pred HHHHHC-CChHHHHHHHhh
Confidence 999987 789999987653
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-80 Score=789.19 Aligned_cols=565 Identities=28% Similarity=0.398 Sum_probs=489.4
Q ss_pred HHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 706 RLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVA 785 (1283)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 785 (1283)
+++...++.++.+...++++++..++....++++..+++......+ ......+..+++++.++..++.+++.++....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~--~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (694)
T TIGR01846 129 WFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG--LSTLSVLALAMLAVAIFEPALGGLRTYLFAHL 206 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433344444444444444444444444444555555554332111 11222334455566667788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000789 786 GGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFV 865 (1283)
Q Consensus 786 ~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv 865 (1283)
+.++..++|.++|++++++|+.||++ +++|++++|+ +|++.+++++...+..++..++.+++.+++++.++|+++++
T Consensus 207 ~~~~~~~l~~~~~~~l~~l~~~~f~~--~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 283 (694)
T TIGR01846 207 TSRIDVELGARLYRHLLGLPLGYFES--RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGV 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHcCC--CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999995 8999999999 69999999988887777777777777788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHH
Q 000789 866 ILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGA 945 (1283)
Q Consensus 866 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1283)
+++++|++++..++..+..++..++..+...+..+.+.|++.|+++||+++.|+.+.++|.+..++..+...+.......
T Consensus 284 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR01846 284 VIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNI 363 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888887777777777777778888899999999999999999999999999999999999988888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 000789 946 GFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDS 1025 (1283)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~ 1025 (1283)
...+..++..+..++++++|.+++..|.+++|.++++..+...+..|+..+...+..++.+..+.+|+.++++.+++...
T Consensus 364 ~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 443 (694)
T TIGR01846 364 AGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS 443 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 77778888888888999999999999999999999999999999999999999999999999999999999987655332
Q ss_pred CCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCcc
Q 000789 1026 SKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIE 1105 (1283)
Q Consensus 1026 ~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~d 1105 (1283)
. .....+...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|
T Consensus 444 ~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~ 520 (694)
T TIGR01846 444 A--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVD 520 (694)
T ss_pred C--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence 1 111122345689999999999754 3569999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1106 LPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1106 i~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
+++++.+++|++|+||||||.+|++||+|||.++. +++++++++++++.++++++++++|+||||.+|++|.+||||||
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~ 599 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCN-PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQR 599 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCC-CCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHH
Confidence 99999999999999999999999999999999974 46899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
|||+||||++++|+|||||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|+||+
T Consensus 600 qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 600 QRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELL 679 (694)
T ss_pred HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHhh
Q 000789 1266 KITDGAYASLVALHV 1280 (1283)
Q Consensus 1266 ~~~~g~y~~L~~~~~ 1280 (1283)
++ +|.|++|++.|.
T Consensus 680 ~~-~~~y~~l~~~~~ 693 (694)
T TIGR01846 680 AL-QGLYARLWQQQS 693 (694)
T ss_pred Hc-CChHHHHHHhhc
Confidence 96 899999998763
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-80 Score=767.43 Aligned_cols=565 Identities=27% Similarity=0.370 Sum_probs=490.4
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 37 PFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVS 116 (1283)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1283)
.+++++++.+++++ .++++++++++..++.+..|++++.++|.+...+. . . ...+.++++.++..+..++..+
T Consensus 6 ~~~~l~~~l~~~k~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~--~---~-~~~~~~~~~~~~~~~~~~~~~~ 78 (585)
T TIGR01192 6 VYVRALSYLNVHKN-RVLLIVIANITLAAITIAEPILFGRIIDAISSKSD--V---L-PTLALWAGFGVFNTIAYVLVAR 78 (585)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--H---H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788777644 45677777888888888999999999997643221 0 1 1111112223333444445455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000789 117 CWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWF 196 (1283)
Q Consensus 117 ~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 196 (1283)
+....+.++..++|.++|+|++++|++||+++ ++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.
T Consensus 79 ~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (585)
T TIGR01192 79 EADRLAHGRRATLLTEAFGRIISMPLSWHQQR-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWR 157 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666777899999999999999976 89999999999999999998888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 197 LALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGM 276 (1283)
Q Consensus 197 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 276 (1283)
+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+..+
T Consensus 158 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (585)
T TIGR01192 158 LSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLD 237 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888899999999999999999999999999999999999999988888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000789 277 VSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKP 356 (1283)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 356 (1283)
..++...+..++..+..++++++|++++.+|.+++|.+++++.++.....|+.++...+..++.+..+.+|+.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~ 317 (585)
T TIGR01192 238 WWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVF 317 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 77777776666777777788899999999999999999999999888889999999999999999999999999998655
Q ss_pred CCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 000789 357 KIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLI 436 (1283)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 436 (1283)
+.++.. .....+...+.|+++||+|+|+++ .++|+|+||++++||++||+||||||||||+++|+|+|+|++|+|.+
T Consensus 318 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 394 (585)
T TIGR01192 318 QREEPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394 (585)
T ss_pred cccCCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE
Confidence 432211 111112234579999999999743 35899999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 000789 437 DGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSG 516 (1283)
Q Consensus 437 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 516 (1283)
||+|+++++.+++|++++||+|+|++|++|++|||.++.++.++++++++++.+++++++.++|+|++|.+|++|.+|||
T Consensus 395 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 395 DGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChh
Q 000789 517 GQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHD 596 (1283)
Q Consensus 517 GqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 596 (1283)
||||||+|||||+++|++||||||||+||+++++.+.+.|.++.+++|+|+||||+++++.||+|++|++|++++.|+|+
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHh
Q 000789 597 ELIKDPEGPYTQLVRLQ 613 (1283)
Q Consensus 597 ~l~~~~~~~~~~~~~~~ 613 (1283)
+++++ ++.|++++..+
T Consensus 555 ~l~~~-~~~y~~l~~~~ 570 (585)
T TIGR01192 555 ELIQK-DGRFYKLLRRS 570 (585)
T ss_pred HHHHC-CChHHHHHHhC
Confidence 99987 78999998765
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-80 Score=770.16 Aligned_cols=525 Identities=24% Similarity=0.321 Sum_probs=454.0
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 40 KLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWM 119 (1283)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (1283)
+++++.+++++ .+++.+++.++.+++....|+++++++|.....+. . . ......+.++++.++..++.++..++..
T Consensus 3 ~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02868 3 RILPLLQPRTR-RLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-V-L-YLSVAAVAVRAFGIGRAVFRYLERLVGH 78 (529)
T ss_pred hHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-h-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666544 44566677777777888888999999997643211 0 0 0111111122344556677888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000789 120 VTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLAL 199 (1283)
Q Consensus 120 ~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l 199 (1283)
..+.++..++|.++|+|++++|.++|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.+++
T Consensus 79 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 157 (529)
T TIGR02868 79 DAALRSLGRLRVRVYDRLARLALAGRRRF-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAAL 157 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccccccC-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999876 99999999999999999999988888899988889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 200 VLLACLPAIVIAGGSMALI-MSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVS 278 (1283)
Q Consensus 200 ~~l~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (1283)
++++.+|++.++...+.++ .++..++.++..++.++.+.|.++|+++||+|++|+.+.++|++..++..+...+..+..
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02868 158 VLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARAT 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888876665444444 455667778888999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 000789 279 GIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKI 358 (1283)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 358 (1283)
+...++..++..+..++++++|++++.+|.+++|.+++++++......|+..+...+..++++.++.+|+.++++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (529)
T TIGR02868 238 GLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 88887777777778888889999999999999999999999888888899999889999999999999999999876543
Q ss_pred CCCCCC-CCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEC
Q 000789 359 DPYDTS-GITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLID 437 (1283)
Q Consensus 359 ~~~~~~-~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~ 437 (1283)
+..... .....+..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+|
T Consensus 318 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 318 PEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred CCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 221110 01111234579999999999753 369999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 000789 438 GIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGG 517 (1283)
Q Consensus 438 g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 517 (1283)
|+|++++ .+++|++|+||||+|++|++||+|||++|.|++++++++++++.+++++|+.++|+||||.+||+|.+||||
T Consensus 396 g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 396 GVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred CEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 000789 518 QKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRL 572 (1283)
Q Consensus 518 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l 572 (1283)
||||||||||++++|+|||||||||+||+++|+.|++.+.++.+++|+|+||||+
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999988899999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-80 Score=704.86 Aligned_cols=513 Identities=30% Similarity=0.450 Sum_probs=445.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHH
Q 000789 759 FWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSL 838 (1283)
Q Consensus 759 ~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l 838 (1283)
..+..|++..+...++..++...+.++.+++.+..-.+.|++++.++.+||.+ ..+|.+.+.+.+-...+...+...+
T Consensus 75 ~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~--~~tG~l~~~idRgsraI~~vl~~~V 152 (591)
T KOG0057|consen 75 ALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLS--RGTGALNRIIDRGSRAISFVLSAMV 152 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcC--CCcchHHHHHHhhhhHHHHHHHHHH
Confidence 35667888888999999999999999999999999999999999999999986 6789999999888888888887777
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcc
Q 000789 839 ALVVQNIATIAAGLII-AFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCS 917 (1283)
Q Consensus 839 ~~~~~~~~~~~~~~~~-~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~ 917 (1283)
..++..++.+...... ..-.....+++.+..+..+..+.+....+..+..++...++..+.+.+.|++.+.++||+||.
T Consensus 153 ~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNn 232 (591)
T KOG0057|consen 153 FNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNN 232 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHccc
Confidence 7777766655444433 333556666666666666666666666666666777888888999999999999999999999
Q ss_pred HHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Q 000789 918 EEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTS 997 (1283)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 997 (1283)
|++..++|...+.++.+...+.....+........+.....+.+.+.+..-+.+|.++++++..+.....+...|+..+.
T Consensus 233 E~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg 312 (591)
T KOG0057|consen 233 EEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLG 312 (591)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHH
Confidence 99999999999999888877765555544444445555666677777777788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCC
Q 000789 998 AMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGES 1077 (1283)
Q Consensus 998 ~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~S 1077 (1283)
..+.++.++..-+..++.+.+....+... ..+....++.|+|+||+|.|++ ++++|+++||+|++||||||||+|
T Consensus 313 ~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~---~~~i~~~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~n 387 (591)
T KOG0057|consen 313 SVYRELRQALTDMRTLFILLEVDEDIQEA---ALPIELFGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSN 387 (591)
T ss_pred HHHHHHHHHHHhHHHHHhhhhhhhhhhhc---cCCcccCCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCC
Confidence 99999988888877776654432222111 1122335678999999999984 457999999999999999999999
Q ss_pred CCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhC
Q 000789 1078 GSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASN 1157 (1283)
Q Consensus 1078 GSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~ 1157 (1283)
||||||++++|+||+| ++|+|+|||+|+++++++++|+.|||||||..||++||.+||.||+ +.+++||+.++||+++
T Consensus 388 GsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn-~sas~eeV~e~~k~a~ 465 (591)
T KOG0057|consen 388 GSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGN-PSASDEEVVEACKRAG 465 (591)
T ss_pred CCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCC-CCcCHHHHHHHHHHcC
Confidence 9999999999999999 9999999999999999999999999999999999999999999994 5799999999999999
Q ss_pred hHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecC
Q 000789 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHR 1237 (1283)
Q Consensus 1158 l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHr 1237 (1283)
+||.|.++|+||+|.|||+|..||||||||++||||+|++|+|++||||||+||.+||+.|.+++.....++|+|+|+||
T Consensus 466 ~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~ 545 (591)
T KOG0057|consen 466 LHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHR 545 (591)
T ss_pred cHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred chHHhhcCEEEEEeCCEEEEecChHHHHhccCchhHHHHHHhhc
Q 000789 1238 LTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVS 1281 (1283)
Q Consensus 1238 l~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~~~ 1281 (1283)
++++++||+|++|++|+++|+|+|+||++ +.+.|+++|..|..
T Consensus 546 l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~~ 588 (591)
T KOG0057|consen 546 LDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQTS 588 (591)
T ss_pred chhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhccccc
Confidence 99999999999999999999999999999 59999999988754
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-79 Score=766.17 Aligned_cols=544 Identities=25% Similarity=0.366 Sum_probs=477.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh
Q 000789 64 GLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIG 143 (1283)
Q Consensus 64 ~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~ 143 (1283)
.++....|++++.++|.+...... ......++..++++.++..++.++..++....+.++..++|.++|++++++|++
T Consensus 8 ~~~~~~~p~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ 85 (569)
T PRK10789 8 AMLQLIPPKVVGIIVDGVTEQHMT--TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPE 85 (569)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 344455677899999976432111 011222233333444556667788788888899999999999999999999999
Q ss_pred hHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 144 FFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVA-LARGWFLALVLLACLPAIVIAGGSMALIMSKM 222 (1283)
Q Consensus 144 ~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~ 222 (1283)
+|++. ++|++++|+++|++.++..+...+..++..++.+++.++++ ++++|.+++++++++|+++++...+.++.++.
T Consensus 86 ~~~~~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 86 FYLRH-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHcCC-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876 89999999999999999888777777887766666665555 58999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 223 SSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSK 302 (1283)
Q Consensus 223 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 302 (1283)
.++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+..+...++...+..++.++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888888887777776666666777778889999
Q ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcccCccccEEEEEEEE
Q 000789 303 LIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYF 382 (1283)
Q Consensus 303 ~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f 382 (1283)
++.+|.+|+|.+++++.+......|+..+...+..++++.++.+|+.++++.+++.++.. ...+..++.|+++||+|
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEE
Confidence 999999999999999999998899999999999999999999999999998765432211 11222346799999999
Q ss_pred ECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccEEEccCCCC
Q 000789 383 RYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPIL 462 (1283)
Q Consensus 383 ~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 462 (1283)
+|++. +.++|+|+||+++||++++|+||||||||||+++|+|+|+|++|+|.+||+++++++..++|++|+||+|+|++
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99753 34799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000789 463 FATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATS 542 (1283)
Q Consensus 463 ~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts 542 (1283)
|++|++|||+++.++.++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++|+|||||||||
T Consensus 401 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts 480 (569)
T PRK10789 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALS 480 (569)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCChhHHHHHHhhc
Q 000789 543 ALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEG 615 (1283)
Q Consensus 543 ~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 615 (1283)
+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++.|+|++++++ ++.|++++..|..
T Consensus 481 ~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 481 AVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 99999999999999998889999999999999999999999999999999999999987 7899999987644
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-79 Score=767.79 Aligned_cols=563 Identities=33% Similarity=0.511 Sum_probs=501.2
Q ss_pred HHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 708 AYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGG 787 (1283)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ 787 (1283)
+.+.++.++.++++.+++.+.+++.+..++.+...++..+... .......+..+++++.++..++.+++.++....+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR--DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSN 83 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666777777767776666666666555433211 11112223445666777788888999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000789 788 KLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVIL 867 (1283)
Q Consensus 788 ~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l 867 (1283)
++...+|..+|+++++.|.++|++ .++|++.+|+++|++.+++++...+..++..++.++++++++++++|+++++++
T Consensus 84 ~~~~~lr~~l~~~~~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l 161 (571)
T TIGR02203 84 KVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVV 161 (571)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999985 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHH
Q 000789 868 AVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGF 947 (1283)
Q Consensus 868 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1283)
++.|++++..++..+..++...+..+...+..+.+.|.+.|+++||+++.++.+.++|.+..++..+...+.....+...
T Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (571)
T TIGR02203 162 VMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISS 241 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 000789 948 GFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSK 1027 (1283)
Q Consensus 948 ~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~ 1027 (1283)
.+...+..+..++++++|++++..|.+++|.++++..+...+..|+..+......+..++.+.+|+.++++.+++.+...
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 321 (571)
T TIGR02203 242 PITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT 321 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 88888888888899999999999999999999999999999999999999999999999999999999998665432211
Q ss_pred CcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCC
Q 000789 1028 DEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELP 1107 (1283)
Q Consensus 1028 ~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~ 1107 (1283)
.+.+...+.|+++||+|+|+++ +.++|+|+||+|+|||+++|+|+||||||||+++|+|+|+|++|+|++||+|++
T Consensus 322 ---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~ 397 (571)
T TIGR02203 322 ---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLA 397 (571)
T ss_pred ---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHH
Confidence 1112234679999999999854 457999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHH
Q 000789 1108 KFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQR 1187 (1283)
Q Consensus 1108 ~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1187 (1283)
+++.+++|++++||||+|++|+|||||||.++++++.++++++++++.+++++++.++|+|+||.+||+|.+||||||||
T Consensus 398 ~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQR 477 (571)
T TIGR02203 398 DYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQR 477 (571)
T ss_pred hcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHH
Confidence 99999999999999999999999999999998544799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhc
Q 000789 1188 IAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1188 laiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
||||||++++|+|||||||||+||+++|+.|.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|++|+++
T Consensus 478 iaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 478 LAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR 557 (571)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999986
Q ss_pred cCchhHHHHHHh
Q 000789 1268 TDGAYASLVALH 1279 (1283)
Q Consensus 1268 ~~g~y~~L~~~~ 1279 (1283)
++.|++++..+
T Consensus 558 -~~~~~~~~~~~ 568 (571)
T TIGR02203 558 -NGLYAQLHNMQ 568 (571)
T ss_pred -CCHHHHHHHHh
Confidence 88999998865
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-79 Score=695.42 Aligned_cols=505 Identities=26% Similarity=0.340 Sum_probs=435.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000789 766 VLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNI 845 (1283)
Q Consensus 766 ~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~ 845 (1283)
++++...+..+.+....+.+..++...+|.++|+++...+..-... ..+|++++|+..|++.+|+.+-..+...+..+
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r--~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~ 143 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLR--YRSGDLLNRLVADVDALDNLYLRVIAPAVVAL 143 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHh--cChHhHHHHHHhhHHHHhhHHHHHHhhHHHHH
Confidence 4677888889999999999999999999999999999888777664 78999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHH
Q 000789 846 ATIAAGLIIAFTANWILAFVILA-VSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDL 924 (1283)
Q Consensus 846 ~~~~~~~~~~~~~~~~l~lv~l~-~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~ 924 (1283)
+...+..+...+++|.+++.+.. ...+.++..+...++-+...+..+...+...+++.|.+.|....+.||.++.+.+.
T Consensus 144 ~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~ 223 (573)
T COG4987 144 VLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTA 223 (573)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHH
Confidence 77777777776778877765544 44555666677777778888888888889999999999999999999999999999
Q ss_pred HHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000789 925 YEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTS-AMAPDT 1003 (1283)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 1003 (1283)
+.+..+.+.+...+...+.++...+..++..+..+..+.+....+..|..+......+++.+.....++.-+. ....+.
T Consensus 224 l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~l 303 (573)
T COG4987 224 LEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHL 303 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHh
Confidence 9999998888888888887777777766666666534444444455666664444444444334444444444 555778
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHH
Q 000789 1004 TKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKST 1083 (1283)
Q Consensus 1004 ~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKST 1083 (1283)
.+...++.|+.++.+.+|+...+. +.. +.....++++||||+||++ .+++|+|+||++++||||||+|||||||||
T Consensus 304 gq~~~Sa~Rl~~i~~q~~e~~~~~-~~~--~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 304 GQVIASARRLNDILDQKPEVTFPD-EQT--ATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred hHHHHHHHHHhhhccCCcccCCCc-ccc--CCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHH
Confidence 888999999999999888765441 111 1112279999999999975 568999999999999999999999999999
Q ss_pred HHHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHH
Q 000789 1084 VIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFIS 1163 (1283)
Q Consensus 1084 L~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~ 1163 (1283)
++++|.|.|+|++|+|..+|++++.++.+.+|+.|++++|.++||++|+|+||.+++ +++||||+|+++++++++++++
T Consensus 380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~-~~AsDEel~~aL~qvgL~~l~~ 458 (573)
T COG4987 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLAN-PDASDEELWAALQQVGLEKLLE 458 (573)
T ss_pred HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999984 5799999999999999999999
Q ss_pred hCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh
Q 000789 1164 ALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN 1243 (1283)
Q Consensus 1164 ~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~ 1243 (1283)
+.|+||+|++||+|.+||||||||+||||+||+|.+++||||||.+||++||+.|.+.|.+..++||+|+||||+..++.
T Consensus 459 ~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~ 538 (573)
T COG4987 459 SAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER 538 (573)
T ss_pred hChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEeCCEEEEecChHHHHhccCchhHHHHHH
Q 000789 1244 ADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278 (1283)
Q Consensus 1244 ~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~ 1278 (1283)
||||+||++|+++|+|+|.+|+++ +|.|++|.+.
T Consensus 539 ~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q~ 572 (573)
T COG4987 539 MDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQL 572 (573)
T ss_pred cCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhcc
Confidence 999999999999999999999995 9999999763
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-78 Score=763.10 Aligned_cols=571 Identities=35% Similarity=0.535 Sum_probs=495.4
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 37 PFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVS 116 (1283)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1283)
.++.++++.++++ ..+.+.+++.++.+++....|++++.++|.+...... ......+.+++++.++..++.+++.+
T Consensus 5 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (576)
T TIGR02204 5 PLAALWPFVRPYR-GRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSS---GLLNRYFAFLLVVALVLALGTAARFY 80 (576)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666553 3445666777788888888899999999974322111 11222223333334445566777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000789 117 CWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWF 196 (1283)
Q Consensus 117 ~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 196 (1283)
+....++++..++|..++++++++|..+|++. +.|++++|+++|++.+++++...+..++..++.+++.++++++++|.
T Consensus 81 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (576)
T TIGR02204 81 LVTWLGERVVADIRRAVFAHLISLSPSFFDKN-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPK 159 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88889999999999999999999999999876 89999999999999999999888888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 197 LALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGM 276 (1283)
Q Consensus 197 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 276 (1283)
+++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||.|+.|+.+.++|++..++..+...+...
T Consensus 160 l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (576)
T TIGR02204 160 LTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIR 239 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988898888888899999999999999999999999999999999999999999999999999988887777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000789 277 VSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKP 356 (1283)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 356 (1283)
.......+..++..+..++++++|++++..|.+|+|.++++..+......|+..+...+..+..+..+.+|+.++++.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~ 319 (576)
T TIGR02204 240 TRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEP 319 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 66666655555555666777888999999999999999999998888899999999999999999999999999998655
Q ss_pred CCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 000789 357 KIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLI 436 (1283)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 436 (1283)
+.+..........+..+.|+++||+|+|++++++++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|++
T Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i 399 (576)
T TIGR02204 320 DIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILL 399 (576)
T ss_pred cCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 42211101111112245799999999998543357999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 000789 437 DGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSG 516 (1283)
Q Consensus 437 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 516 (1283)
||.|+++++.+++|++|+||||+|++|++||+|||.++.|+.++++++++++.++++++++++|+|+||.+||+|.+|||
T Consensus 400 ~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSg 479 (576)
T TIGR02204 400 DGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSG 479 (576)
T ss_pred CCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCH
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChh
Q 000789 517 GQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHD 596 (1283)
Q Consensus 517 GqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 596 (1283)
|||||++||||++++|+|||||||||+||+++++.+.+.++++.+++|+|+||||++.++.||+|++|++|++++.|+|+
T Consensus 480 Gq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~ 559 (576)
T TIGR02204 480 GQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHA 559 (576)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHh
Q 000789 597 ELIKDPEGPYTQLVRLQ 613 (1283)
Q Consensus 597 ~l~~~~~~~~~~~~~~~ 613 (1283)
+++++ ++.|++++..|
T Consensus 560 ~l~~~-~~~~~~l~~~~ 575 (576)
T TIGR02204 560 ELIAK-GGLYARLARLQ 575 (576)
T ss_pred HHHHc-CChHHHHHhhc
Confidence 99987 78899888654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-78 Score=687.89 Aligned_cols=555 Identities=23% Similarity=0.328 Sum_probs=464.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 49 DAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATR 128 (1283)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (1283)
++..++++++.+++..++...+..+.|++|..-.-..... ...+.......=++++...+..|......+....++..+
T Consensus 14 ~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~-~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~ 92 (573)
T COG4987 14 HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAY-IFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLSA 92 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3456677777777777777777778899887632211110 111111222233456677788888888888899999999
Q ss_pred HHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHH
Q 000789 129 IRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLA-CLPA 207 (1283)
Q Consensus 129 lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~-~~p~ 207 (1283)
+|.++|+++...+..-..+. ++||+++|+..|++.+++.+-..+...+..+..+.+..+.+.+++|.+++.+.. ++.+
T Consensus 93 lRv~~f~kl~p~sp~~~~r~-r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~ 171 (573)
T COG4987 93 LRVRLFEKLEPLSPALLLRY-RSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLL 171 (573)
T ss_pred HHHHHHHhhccCChHHHHhc-ChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999998888765 899999999999999999999888888888888777777787889998876444 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 208 IVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLML 287 (1283)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1283)
.+++..++.+..++..++..+..+...+.+.|.+.|....+.||+++.+.+.+.+.-..+.+...+...+..+...+..+
T Consensus 172 lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l 251 (573)
T COG4987 172 LLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLL 251 (573)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777788888888888889999999999999999999999999999999888888888888888888887777
Q ss_pred HHHHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCC
Q 000789 288 TVIGTYG-LAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTS-PCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSG 365 (1283)
Q Consensus 288 ~~~~~~~-~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~ 365 (1283)
+..+..+ .++|.++ .+..|..+.-....+++.++....++..+. ..+....+...|+.|+.++++++|+...+..
T Consensus 252 ~~g~~v~~~l~w~a~-~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~-- 328 (573)
T COG4987 252 IAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDE-- 328 (573)
T ss_pred HHHHHHHHHHHHHHh-cCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCcc--
Confidence 6666555 4555544 345565553333333333344444444444 3456778889999999999998887654311
Q ss_pred CcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCC
Q 000789 366 ITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ 445 (1283)
Q Consensus 366 ~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~ 445 (1283)
..+. ....++++||||+|++. +.++|+|+||++++||++||+|+|||||||++++|.|.|+|++|+|.++|.++..++
T Consensus 329 ~~~~-~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~ 406 (573)
T COG4987 329 QTAT-TGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLD 406 (573)
T ss_pred ccCC-ccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCC
Confidence 1111 12279999999999965 457999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000789 446 LKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIA 525 (1283)
Q Consensus 446 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiA 525 (1283)
.+.+|+.|++++|.+++|++|+|||+.+++|+++||+++++++++++++++++.|+||+|.+||.|..||||||||+|||
T Consensus 407 ~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlA 486 (573)
T COG4987 407 EQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALA 486 (573)
T ss_pred hhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCCh
Q 000789 526 RAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGP 605 (1283)
Q Consensus 526 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~ 605 (1283)
|+|++|+|++||||||.+||+.||+++.+.|.+..++||+|+||||+..++.||+|+||++|+|+|+|+|++|+.+ +|.
T Consensus 487 R~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~-~g~ 565 (573)
T COG4987 487 RALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN-NGR 565 (573)
T ss_pred HHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc-ccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997 899
Q ss_pred hHHHHH
Q 000789 606 YTQLVR 611 (1283)
Q Consensus 606 ~~~~~~ 611 (1283)
|+++++
T Consensus 566 ~~~l~q 571 (573)
T COG4987 566 YKRLYQ 571 (573)
T ss_pred HHHHhc
Confidence 998875
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-78 Score=756.32 Aligned_cols=564 Identities=29% Similarity=0.403 Sum_probs=478.9
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 704 MRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFG 783 (1283)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 783 (1283)
++++..+.++.++.+.+.++++++..++....++++..+++..... .....+.++++++.++..+..++..++..
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (588)
T PRK13657 7 YARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGK-----GDIFPLLAAWAGFGLFNIIAGVLVARHAD 81 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666665566666666666666554321 11111223333334444444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000789 784 VAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILA 863 (1283)
Q Consensus 784 ~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 863 (1283)
+...++..+++.++|+++++.|+.+|++ .++|++++|+++|++.+...+...+..++..++.+++.+++++..+|+++
T Consensus 82 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (588)
T PRK13657 82 RLAHRRRLAVLTEYFERIIQLPLAWHSQ--RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLS 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHCc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677789999999999999985 78999999999999999988888888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHH
Q 000789 864 FVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILS 943 (1283)
Q Consensus 864 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1283)
++++++.|+++++.....+..++..++..+...+..+.+.|.+.|+++||+|+.++.+.++|.+..++..+...+.....
T Consensus 160 l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK13657 160 LVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWW 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888877777777777777777888888999999999999999999999999999999999988888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 000789 944 GAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKI 1023 (1283)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~ 1023 (1283)
.....+..++..+...+++++|.+++.+|.+++|.++++..++.....|+..+...+..+..+..+.+|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~ 319 (588)
T PRK13657 240 ALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDV 319 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 77777777777788888999999999999999999999999999999999999999999999999999999998765442
Q ss_pred CCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECC
Q 000789 1024 DSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDN 1103 (1283)
Q Consensus 1024 ~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG 1103 (1283)
+... ...+.+...+.|+++||+|+||++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||
T Consensus 320 ~~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g 396 (588)
T PRK13657 320 RDPP-GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDG 396 (588)
T ss_pred CCCC-CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC
Confidence 2111 111112234579999999999843 4699999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChh
Q 000789 1104 IELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGG 1183 (1283)
Q Consensus 1104 ~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1183 (1283)
+|+++++.+++|++|+||||||.+|++||||||.++. ++.+|++++++++.+++++++.++|+|+||.+|++|.+||||
T Consensus 397 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~-~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 475 (588)
T PRK13657 397 TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR-PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475 (588)
T ss_pred EEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCC-CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence 9999999999999999999999999999999999984 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHH
Q 000789 1184 QKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDA 1263 (1283)
Q Consensus 1184 QrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~e 1263 (1283)
||||||||||++++|+|||||||||+||+++|+.|.+.|++..+++|+|+||||+++++.||+|++|++|+++|.|+|++
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHhccCchhHHHHHHh
Q 000789 1264 LMKITDGAYASLVALH 1279 (1283)
Q Consensus 1264 Ll~~~~g~y~~L~~~~ 1279 (1283)
|+++ ++.|++|+..+
T Consensus 556 l~~~-~~~y~~l~~~~ 570 (588)
T PRK13657 556 LVAR-GGRFAALLRAQ 570 (588)
T ss_pred HHHC-CChHHHHHHHh
Confidence 9986 89999999865
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-78 Score=750.36 Aligned_cols=521 Identities=23% Similarity=0.284 Sum_probs=442.3
Q ss_pred HHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 708 AYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFW--ALIYLVLGIINLIAVPFQNYFFGVA 785 (1283)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l~~~~~~~~~~~~ 785 (1283)
+.+.++.++.+++..++..+..++....++++...++....... ...++ ...++++.++..++.++..++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (529)
T TIGR02868 5 LPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP----VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDA 80 (529)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555666666554332110 11111 1112234455677778888889999
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000789 786 GGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFV 865 (1283)
Q Consensus 786 ~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv 865 (1283)
+.++..++|.++|+++++.|.+||++ +++|++++|+++|++.+++.+...+..++..++.+++++++++..+|.++++
T Consensus 81 ~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 158 (529)
T TIGR02868 81 ALRSLGRLRVRVYDRLARLALAGRRR--FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALV 158 (529)
T ss_pred HHHHHHHHHHHHHHHhhccCcccccc--CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999985 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHH
Q 000789 866 ILAVSPLMLVQG-YTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSG 944 (1283)
Q Consensus 866 ~l~~~pl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1283)
+++.+|++.+.. ++..+..+...++.++..++..+.+.|.++|+++||+|+.++.+.++|.+..++..+...+.....+
T Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02868 159 LAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATG 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877765554 4444444555566677778889999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 000789 945 AGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKID 1024 (1283)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 1024 (1283)
....+..++..+..++++++|.+++..|.++.|.+.++..+......++..+......+..+..+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (529)
T TIGR02868 239 LGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRP 318 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcC
Confidence 77777788888888888899999999999999999999999888999999999999999999999999999998765432
Q ss_pred CCCCc-CCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECC
Q 000789 1025 SSKDE-GMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDN 1103 (1283)
Q Consensus 1025 ~~~~~-~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG 1103 (1283)
..... ....++..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 319 ~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g 396 (529)
T TIGR02868 319 EGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDG 396 (529)
T ss_pred CCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 21111 11111234579999999999853 3599999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChh
Q 000789 1104 IELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGG 1183 (1283)
Q Consensus 1104 ~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1183 (1283)
+|++++ .+++|++|+||||||+||++||||||++|. ++++||++++|++.++++|+|.+||+||||.|||+|.+||||
T Consensus 397 ~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 397 VSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGR-PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred EEhhhH-HHHHHhheEEEccCcccccccHHHHHhccC-CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence 999999 999999999999999999999999999984 478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCc
Q 000789 1184 QKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRL 1238 (1283)
Q Consensus 1184 QrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl 1238 (1283)
||||||||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||+
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-77 Score=747.14 Aligned_cols=565 Identities=28% Similarity=0.389 Sum_probs=483.7
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 704 MRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFG 783 (1283)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 783 (1283)
+++++++.++.++.+++.++++++..++....+++++.+++..+.... ...+.++++++.++..+..++..++..
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-----VLPTLALWAGFGVFNTIAYVLVAREAD 81 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777777777777777777777778888877765543211 111222222333444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000789 784 VAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILA 863 (1283)
Q Consensus 784 ~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 863 (1283)
....++..++|.++|++++++|++||++ +++|++++|+++|++.+...+...+..++..++.+++.+++++.++|.++
T Consensus 82 ~~~~~~~~~lr~~~~~~l~~l~~~~~~~--~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 159 (585)
T TIGR01192 82 RLAHGRRATLLTEAFGRIISMPLSWHQQ--RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLS 159 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667777789999999999999985 78999999999999999999888888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHH
Q 000789 864 FVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILS 943 (1283)
Q Consensus 864 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1283)
+++++++|++++......+..++..++..+...+..+.+.|.++|+++||+|+.++.+.++|.+..++..+...+.....
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (585)
T TIGR01192 160 IVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWW 239 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777777777677777778888999999999999999999999999999999998888777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 000789 944 GAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKI 1023 (1283)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~ 1023 (1283)
+....+...+..+..++++++|.+++.+|.+++|.++++..+......|+..+......+..+..+.+|+.++.+.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 319 (585)
T TIGR01192 240 ALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQR 319 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 66666666777777788889999999999999999999999999999999999999999999999999999998765443
Q ss_pred CCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECC
Q 000789 1024 DSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDN 1103 (1283)
Q Consensus 1024 ~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG 1103 (1283)
..... ....+...+.|+++||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 320 ~~~~~-~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 396 (585)
T TIGR01192 320 EEPAD-APELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDG 396 (585)
T ss_pred cCCcc-CCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECC
Confidence 21111 11112234579999999999843 3589999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChh
Q 000789 1104 IELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGG 1183 (1283)
Q Consensus 1104 ~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1183 (1283)
+|+++++.+++|++++||||||.+|++|++|||.++. +++++++++++++.+++++++.++|+|+||.+|++|.+||||
T Consensus 397 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgG 475 (585)
T TIGR01192 397 IDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR-EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475 (585)
T ss_pred EEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHH
Confidence 9999999999999999999999999999999999984 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHH
Q 000789 1184 QKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDA 1263 (1283)
Q Consensus 1184 QrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~e 1263 (1283)
|||||+|||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+|
T Consensus 476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 555 (585)
T TIGR01192 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQE 555 (585)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHhccCchhHHHHHHhh
Q 000789 1264 LMKITDGAYASLVALHV 1280 (1283)
Q Consensus 1264 Ll~~~~g~y~~L~~~~~ 1280 (1283)
|+++ +|.|++|+..+.
T Consensus 556 l~~~-~~~y~~l~~~~~ 571 (585)
T TIGR01192 556 LIQK-DGRFYKLLRRSG 571 (585)
T ss_pred HHHC-CChHHHHHHhCc
Confidence 9996 899999998764
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-77 Score=753.19 Aligned_cols=564 Identities=35% Similarity=0.530 Sum_probs=485.2
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 710 LNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKL 789 (1283)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 789 (1283)
+.++.++.+.+.+++.++.+++....++++..+++..+...+ ......+..+++++.++..++.+++.++....+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (576)
T TIGR02204 12 FVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS--SGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERV 89 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555556666666666666666654332111 111222333444455556667778888999999999
Q ss_pred HHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000789 790 IRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAV 869 (1283)
Q Consensus 790 ~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~ 869 (1283)
...+|..+++++++.|.++|++ .++|++++|+++|++.+++++...+..++..++.+++.+++++.++|++++++++.
T Consensus 90 ~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 167 (576)
T TIGR02204 90 VADIRRAVFAHLISLSPSFFDK--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167 (576)
T ss_pred HHHHHHHHHHHHHcCCHHHHcc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999985 77999999999999999999999898989999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHH
Q 000789 870 SPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGF 949 (1283)
Q Consensus 870 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1283)
.|++++..++..+..++..++..+...+..+.+.|.++|+++||+++.++.+.++|.+..++..+...+..........+
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (576)
T TIGR02204 168 VPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAI 247 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777777777788888888889999999999999999999999999999999998888777776666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCc
Q 000789 950 SFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDE 1029 (1283)
Q Consensus 950 ~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~ 1029 (1283)
...+.++..++++++|.+++..|.+++|.++++..+......|+..+...+.++..+..+.+|+.++++.+++.+.....
T Consensus 248 ~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~ 327 (576)
T TIGR02204 248 VIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHP 327 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCC
Confidence 66666667778888999999999999999999999999999999999999999999999999999998865442211111
Q ss_pred CCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCC
Q 000789 1030 GMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF 1109 (1283)
Q Consensus 1030 ~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~ 1109 (1283)
.....+..+.|+|+||+|+||++.+.++|+|+||+|+|||+++|+|+||||||||+++|+|+|+|++|+|++||+|++++
T Consensus 328 ~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~ 407 (576)
T TIGR02204 328 KTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL 407 (576)
T ss_pred ccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhc
Confidence 11111224579999999999864335799999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHH
Q 000789 1110 KLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIA 1189 (1283)
Q Consensus 1110 ~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1189 (1283)
+.+++|++|+||||||++|++||||||.++. ++.+|++++++++.+++.++++++|+|+||.+||+|.+|||||||||+
T Consensus 408 ~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~-~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~ 486 (576)
T TIGR02204 408 DPAELRARMALVPQDPVLFAASVMENIRYGR-PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIA 486 (576)
T ss_pred CHHHHHHhceEEccCCccccccHHHHHhcCC-CCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHH
Confidence 9999999999999999999999999999984 467899999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhccC
Q 000789 1190 IARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITD 1269 (1283)
Q Consensus 1190 iARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~ 1269 (1283)
||||++++|+|||||||||+||+++|+.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|+++ +
T Consensus 487 laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~ 565 (576)
T TIGR02204 487 IARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-G 565 (576)
T ss_pred HHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-C
Confidence 999999999999999999999999999999999998889999999999999999999999999999999999999995 8
Q ss_pred chhHHHHHHh
Q 000789 1270 GAYASLVALH 1279 (1283)
Q Consensus 1270 g~y~~L~~~~ 1279 (1283)
+.|++|++.|
T Consensus 566 ~~~~~l~~~~ 575 (576)
T TIGR02204 566 GLYARLARLQ 575 (576)
T ss_pred ChHHHHHhhc
Confidence 9999999876
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-77 Score=746.86 Aligned_cols=515 Identities=27% Similarity=0.420 Sum_probs=460.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHH
Q 000789 759 FWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSL 838 (1283)
Q Consensus 759 ~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l 838 (1283)
.|..+++++.++..++.++..++....+.+...++|..+|+++++.|++||++ +++|++++|+++|++.++..+...+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~i~srl~~Dv~~i~~~~~~~~ 114 (569)
T PRK10789 37 MWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLR--HRTGDLMARATNDVDRVVFAAGEGV 114 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455555566677777888888889999999999999999999999999985 7899999999999999998887777
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcc
Q 000789 839 ALVVQNIATIAAGLIIA-FTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCS 917 (1283)
Q Consensus 839 ~~~~~~~~~~~~~~~~~-~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~ 917 (1283)
..++..++.++++++++ +.++|.+++++++++|++++......+..++..++.++..++..+.+.|.+.|+++||+|+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~ 194 (569)
T PRK10789 115 LTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGL 194 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcc
Confidence 77777766666555555 57999999999999999888877777777777777778888899999999999999999999
Q ss_pred HHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Q 000789 918 EEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTS 997 (1283)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 997 (1283)
++.+.++|.+..++..+...+.....+....+......+..++++++|.+++..|.+++|.++++..+......|+..+.
T Consensus 195 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~ 274 (569)
T PRK10789 195 EDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALA 274 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888877777776666666667777788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCC
Q 000789 998 AMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGES 1077 (1283)
Q Consensus 998 ~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~S 1077 (1283)
..+..+..+..+.+|+.++++.+++.+... .+.+...+.|+++||+|+|+.. +.++|+|+||+|+|||++||||||
T Consensus 275 ~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~s 350 (569)
T PRK10789 275 WMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPT 350 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCC
Confidence 999999999999999999998765432111 1112234679999999999853 357999999999999999999999
Q ss_pred CCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhC
Q 000789 1078 GSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASN 1157 (1283)
Q Consensus 1078 GSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~ 1157 (1283)
|||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||||+|.+|++|++|||.++. +++++++++++++.++
T Consensus 351 GsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~ 429 (569)
T PRK10789 351 GSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGR-PDATQQEIEHVARLAS 429 (569)
T ss_pred CCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCC-CCCCHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999999984 4689999999999999
Q ss_pred hHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecC
Q 000789 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHR 1237 (1283)
Q Consensus 1158 l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHr 1237 (1283)
+++++.++|+|+||.+|++|.+||||||||++||||++++|+|||||||||+||+++++.|++.|++..+++|+|+||||
T Consensus 430 l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~ 509 (569)
T PRK10789 430 VHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHR 509 (569)
T ss_pred CHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred chHHhhcCEEEEEeCCEEEEecChHHHHhccCchhHHHHHHhhc
Q 000789 1238 LTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVS 1281 (1283)
Q Consensus 1238 l~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~~~ 1281 (1283)
++++..||+|++|++|+++|.|+|+||+++ +|.|++|++.|..
T Consensus 510 ~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 510 LSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred hhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 999999999999999999999999999986 8999999987643
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-77 Score=743.21 Aligned_cols=524 Identities=24% Similarity=0.330 Sum_probs=460.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 53 MIVGTISAIGSGLAHPFMTLIFGHLINSFG-SSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRG 131 (1283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~ 131 (1283)
+.++++++++.+++.+..|+++++++|.+. .... ...+..+.+.+++++++..++.+++.++..+.+.++..++|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGEP---LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777778888889999999999873 3211 122233344455556667788899999999999999999999
Q ss_pred HHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000789 132 LYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIA 211 (1283)
Q Consensus 132 ~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~ 211 (1283)
++|++++++|..+|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++.+|+++++
T Consensus 82 ~l~~~l~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~ 160 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGR-PSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIF 160 (529)
T ss_pred HHHHHHHhCCchhhccC-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999876 99999999999999999999888888888888888888999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 212 GGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIG 291 (1283)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1283)
...+.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+.......+..++..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (529)
T TIGR02857 161 MILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATL 240 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888889999999999999999999999999999999999999999888888877777776666666665555
Q ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcccCc
Q 000789 292 TYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKI 371 (1283)
Q Consensus 292 ~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 371 (1283)
..+++++++++.+..|.+|.|.+++++.+......|+..+...+..++++..+++|+.++++.+++..+.. ..+...
T Consensus 241 ~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~---~~~~~~ 317 (529)
T TIGR02857 241 SVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA---PVTAAP 317 (529)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---CCCCCC
Confidence 55555556667777999999999999888888889999999999999999999999999998543321111 111112
Q ss_pred cccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhc
Q 000789 372 EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451 (1283)
Q Consensus 372 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 451 (1283)
.+.|+++||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|+
T Consensus 318 ~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 318 APSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred CCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 3579999999999854 247999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 452 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
+|+||+|+|++|++||+|||.++.++.++++++++++.++++++++++|+|+||.+||+|.+||||||||++||||++++
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEE
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVV 584 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl 584 (1283)
|+|||||||||+||+++++.+.+.+.++.+++|+|+||||+++++.||+|++|
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-77 Score=810.46 Aligned_cols=541 Identities=21% Similarity=0.283 Sum_probs=453.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000789 61 IGSGLAHPFMTLIFGHLINSFGS-SDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILR 139 (1283)
Q Consensus 61 ~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~ 139 (1283)
++..++..+.++.++...|.... .+... ...+..++++++++..++.++..++..+.+.+...++|.++++++++
T Consensus 975 ~~~~~~~~~~~~~l~~w~~~~~~~~~~~~----~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~ 1050 (1522)
T TIGR00957 975 VCNHVSALASNYWLSLWTDDPMVNGTQNN----TSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLR 1050 (1522)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33344445556666766663211 11110 01122344555666667777778888888999999999999999999
Q ss_pred CChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 140 QDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIM 219 (1283)
Q Consensus 140 ~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~ 219 (1283)
.|++||++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|.+++++++++++++++..++.+..
T Consensus 1051 ~p~~ff~~~-~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (1522)
T TIGR00957 1051 SPMSFFERT-PSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASS 1129 (1522)
T ss_pred CChhHhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999976 9999999999999999999999999999999999999888888888877766666666666666676667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 220 SKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWY 299 (1283)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1283)
+...+..++..+.+.+.+.|+++|+++||+|++|+.+.+++.+..+...+..........+......++.. +++++.
T Consensus 1130 r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 1206 (1522)
T TIGR00957 1130 RQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGN---CIVLFA 1206 (1522)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 77667777788899999999999999999999999999999888887777766555555554444333322 233334
Q ss_pred HHHHHH-hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcc--cCccccEE
Q 000789 300 GSKLII-EKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITL--EKIEGEIE 376 (1283)
Q Consensus 300 g~~~v~-~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~--~~~~~~i~ 376 (1283)
|...+. .+.+++|.+.+++.|......|+..+...+..+..+.+|.+|+.++++.+++.+.......++ .+.+|.|+
T Consensus 1207 ~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~ 1286 (1522)
T TIGR00957 1207 ALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVE 1286 (1522)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEE
Confidence 444443 578999999999999999999999999999999999999999999998765532111111111 23568899
Q ss_pred EEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccEEE
Q 000789 377 LRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLV 456 (1283)
Q Consensus 377 ~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 456 (1283)
|+||+|+|+++. .++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+|||+|+++++.+++|++|+||
T Consensus 1287 f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iV 1365 (1522)
T TIGR00957 1287 FRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITII 1365 (1522)
T ss_pred EEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEE
Confidence 999999997542 4699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 000789 457 SQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILL 536 (1283)
Q Consensus 457 ~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~ill 536 (1283)
||||+||+|||||||.... +++++++++|++.+++++++.++|+||||.+||+|.+||||||||+||||||+++|+|||
T Consensus 1366 pQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILi 1444 (1522)
T TIGR00957 1366 PQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILV 1444 (1522)
T ss_pred CCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999998433 589999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCChhHHHHHH
Q 000789 537 LDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRL 612 (1283)
Q Consensus 537 lDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 612 (1283)
||||||+||++|++.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||+++ ++.|+++++.
T Consensus 1445 LDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1445 LDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999987 7999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-80 Score=675.45 Aligned_cols=492 Identities=33% Similarity=0.471 Sum_probs=427.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000789 780 YFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLII-AFTA 858 (1283)
Q Consensus 780 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~-~~~~ 858 (1283)
.++...++.+.+.+--+.|.|+.++++.|+-+ ..+|.+...+......++..+...+..++..++-+....++ ...+
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~--r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE--RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh--cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 45667788888889999999999999999885 55666666665556566666666666666666654444444 4457
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHH
Q 000789 859 NWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVR 938 (1283)
Q Consensus 859 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1283)
+|+.+++.++++.+++++............+...+..++++....+++-+.+|+|.|+.|+.+..+|.+..+.+.+...+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 99999999998888888877666666666788888999999999999999999999999999999999999998887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000789 939 RGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILD 1018 (1283)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 1018 (1283)
.....++.......+.........+.+...+..|.++.|+++....++.....|+..+...+.++.++....++++++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 54444333333344444555566677778889999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcce
Q 000789 1019 SKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098 (1283)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~ 1098 (1283)
.+.+.......+.-.+-..|.+.|+||+|.|.+ ..++|+|+||++++|+++||||+||+||||+.++|+||||+++|.
T Consensus 242 ~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 242 VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred cchhhccCCCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 876654332222111234678999999999974 468999999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCC
Q 000789 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGV 1178 (1283)
Q Consensus 1099 I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~ 1178 (1283)
|.|||+|++++..+++|+.||+||||..||+.|+..|+.||+ ++++++|++.|++.+++++||+++|+||||.|||+|-
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr-~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGR-PDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccC-ccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 999999999999999999999999999999999999999995 5899999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEe
Q 000789 1179 QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQ 1258 (1283)
Q Consensus 1179 ~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~ 1258 (1283)
.||||||||+||||++|++|+||+||||||+||..||++||.+|++..+++|.++|||||+||.+||.|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHhccCchhHHHHH
Q 000789 1259 GSHDALMKITDGAYASLVA 1277 (1283)
Q Consensus 1259 Gt~~eLl~~~~g~y~~L~~ 1277 (1283)
|+|+||+++ +|.|++||.
T Consensus 479 g~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 479 GTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred CcHHHHHHc-CChHHHHhc
Confidence 999999997 999999996
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-76 Score=799.08 Aligned_cols=540 Identities=21% Similarity=0.282 Sum_probs=418.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh
Q 000789 64 GLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIG 143 (1283)
Q Consensus 64 ~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~ 143 (1283)
.++....++.++...|........ ...+.+.+++++++..++.+++.++..+.+.+...++|.+++++++++|++
T Consensus 928 ~~~~~~~~~wl~~w~~~~~~~~~~-----~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ 1002 (1622)
T PLN03130 928 EVFRVSSSTWLSEWTDQGTPKTHG-----PLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMS 1002 (1622)
T ss_pred HHHHHHHHHHHHHHHhccccCCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 333344455566666642211110 112233455566667778888888888999999999999999999999999
Q ss_pred hHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000789 144 FFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVI-AGGSMALIMSKM 222 (1283)
Q Consensus 144 ~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~-~~~~~~~~~~~~ 222 (1283)
||+++ ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|. .++++++++++++ +..++.+..++.
T Consensus 1003 ffd~~-~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~-~~~~~~pl~~~~~~~~~~~~~~~r~~ 1080 (1622)
T PLN03130 1003 FFHTN-PLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTI-SLWAIMPLLVLFYGAYLYYQSTAREV 1080 (1622)
T ss_pred HhccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986 99999999999999999999998889999998888888888888874 3333333333222 223344444555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 223 SSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSK 302 (1283)
Q Consensus 223 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 302 (1283)
.+......+...+.+.|+++|+++||+|++++++.+++.+..+...+..........+......++ ..+++++.|..
T Consensus 1081 ~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~---~~~~i~~~~~~ 1157 (1622)
T PLN03130 1081 KRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETL---GGLMIWLTASF 1157 (1622)
T ss_pred HHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 555556677888999999999999999999987776666555554443322222222221111111 11222222333
Q ss_pred HHHhcC-cc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCC--CcccCcccc
Q 000789 303 LIIEKG-YN-----GGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSG--ITLEKIEGE 374 (1283)
Q Consensus 303 ~v~~~~-~t-----~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~--~~~~~~~~~ 374 (1283)
.+..+. .. .+.+..++.+.+....++..+...+..+..+.+|.+|+.++++.+++.+...... .+..+.+|.
T Consensus 1158 ~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~ 1237 (1622)
T PLN03130 1158 AVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGS 1237 (1622)
T ss_pred HHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCc
Confidence 333321 10 1222223334444445555566667778899999999999998766542211111 111234678
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+|+||+|+|+++ ..++|+|+||+|+|||++|||||||||||||+++|.|+|+|++|+|+|||+|+++++.+++|++|+
T Consensus 1238 I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130 1238 IKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred EEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccE
Confidence 9999999999643 247999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000789 455 LVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKI 534 (1283)
Q Consensus 455 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~i 534 (1283)
+|||||.||+|||||||.++. .++++++++|++.++++++++++|+||||.+||+|.+|||||||||||||||+++|+|
T Consensus 1317 iVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I 1395 (1622)
T PLN03130 1317 IIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI 1395 (1622)
T ss_pred EECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999986 4789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCChhHHHHHHhh
Q 000789 535 LLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQE 614 (1283)
Q Consensus 535 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 614 (1283)
||||||||+||++|++.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++...
T Consensus 1396 LILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1396 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 99999999999999999999999998999999999999999999999999999999999999999876789999987654
Q ss_pred c
Q 000789 615 G 615 (1283)
Q Consensus 615 ~ 615 (1283)
.
T Consensus 1476 ~ 1476 (1622)
T PLN03130 1476 A 1476 (1622)
T ss_pred h
Confidence 3
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-78 Score=706.71 Aligned_cols=483 Identities=29% Similarity=0.472 Sum_probs=377.2
Q ss_pred cEEEEEEEEECCCCCC-CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC----CceEEECCcccCCCCHHH
Q 000789 374 EIELRDVYFRYPARPE-VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD----AGEVLIDGIDIKKLQLKW 448 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~----~G~i~~~g~~~~~~~~~~ 448 (1283)
-++++|++..|..... .++++||||++.+||++||||+|||||||+++.|.|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975422 25899999999999999999999999999999999999987 899999999998888765
Q ss_pred Hh----cccEEEccCCC-CCcc--cHHHHHhc----CCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccc--cCCCCCCC
Q 000789 449 IR----EKIGLVSQEPI-LFAT--SLRENIAY----GKENATDQEIRTAIELANAAKFIDKLPKGLDTMA--GEHGTQLS 515 (1283)
Q Consensus 449 ~r----~~i~~v~Q~~~-l~~~--ti~~ni~~----~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~--~~~g~~LS 515 (1283)
+| +.|+||||+|. .+|. ||.+-|.- ... .+.++.. ..+.+.++.. |+.... ...+.+||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~-~~~~ea~-----~~a~elL~~V--gl~~~~~~~~yPheLS 156 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK-GSRAEAR-----KRAVELLEQV--GLPDPERRDRYPHQLS 156 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc-ccHHHHH-----HHHHHHHHHc--CCCChhhhccCCcccC
Confidence 53 57999999985 4543 66655542 211 1111111 1112333332 333222 44788999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEe
Q 000789 516 GGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEK 592 (1283)
Q Consensus 516 gGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~ 592 (1283)
||||||+.||+||+.+|++||+||||++||+.++.+|.+.|+++. .+.++|+|||++..+.. ||||+||++|+++|.
T Consensus 157 GG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~ 236 (539)
T COG1123 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET 236 (539)
T ss_pred chHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999986 46899999999999987 999999999999999
Q ss_pred cChhHHhcCCCChhHHHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCccccccCC
Q 000789 593 GTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGV 672 (1283)
Q Consensus 593 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1283)
|+.+++++++...|.+..-.... ..
T Consensus 237 G~~~~i~~~p~hpYT~~Ll~a~p----------------------------~~--------------------------- 261 (539)
T COG1123 237 GPTEEILSNPQHPYTRGLLAAVP----------------------------RL--------------------------- 261 (539)
T ss_pred cCHHHHHhccCCcccHHHHhhCC----------------------------Cc---------------------------
Confidence 99999998866555432210000 00
Q ss_pred CCCCCccccccCCCCCCCCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 000789 673 PGPINVFETEEGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDK 752 (1283)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1283)
.. .. . . ...
T Consensus 262 ------~~--~~--~----~---------------------------------------------------------~~~ 270 (539)
T COG1123 262 ------GD--EK--I----I---------------------------------------------------------RLP 270 (539)
T ss_pred ------cc--cc--c----c---------------------------------------------------------ccc
Confidence 00 00 0 0 000
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHH
Q 000789 753 LRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRS 832 (1283)
Q Consensus 753 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~ 832 (1283)
.
T Consensus 271 ------------------------------------------------------------~------------------- 271 (539)
T COG1123 271 ------------------------------------------------------------R------------------- 271 (539)
T ss_pred ------------------------------------------------------------c-------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 000789 833 LVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTV 912 (1283)
Q Consensus 833 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI 912 (1283)
T Consensus 272 -------------------------------------------------------------------------------- 271 (539)
T COG1123 272 -------------------------------------------------------------------------------- 271 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHH
Q 000789 913 ASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALG 992 (1283)
Q Consensus 913 ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~ 992 (1283)
T Consensus 272 -------------------------------------------------------------------------------- 271 (539)
T COG1123 272 -------------------------------------------------------------------------------- 271 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCC--------CCcccccceeEE
Q 000789 993 VSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTR--------PDVQIFRNLCLS 1064 (1283)
Q Consensus 993 ~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~--------~~~~vL~~is~~ 1064 (1283)
..+. . ...-++++|++.+|..+ ....+++||||+
T Consensus 272 --------------------------~~~~---~---------~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~ 313 (539)
T COG1123 272 --------------------------RGPL---R---------AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFD 313 (539)
T ss_pred --------------------------cccc---c---------cCceeEeeeeeeeeccccccccccccceeeeeeeeeE
Confidence 0000 0 01148899999999842 134689999999
Q ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCcc--CCCCChHHHhcceEEEccCCCCC---hhhHHHHHhcC
Q 000789 1065 IPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIE--LPKFKLSWLRQQMGLVSQEPVLF---NETIRTNIAYG 1139 (1283)
Q Consensus 1065 I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~d--i~~~~~~~lR~~i~~V~Qdp~Lf---~gTIreNl~~g 1139 (1283)
+++||++||||+||||||||.++|+|+++|++|+|.++|.| .+.-....+|+++-+|+|||+-. ..||+++|.-.
T Consensus 314 l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~ep 393 (539)
T COG1123 314 LREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEP 393 (539)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhH
Confidence 99999999999999999999999999999999999999977 33333556788999999999632 57999998621
Q ss_pred --CCCCC----CHHHHHHHHHHhChHH-HHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCH
Q 000789 1140 --KQGGA----TEEEIIAATEASNAHN-FISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212 (1283)
Q Consensus 1140 --~~~~~----sd~ei~~al~~a~l~~-~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~ 1212 (1283)
..... ..+.+.+.++.+++.. +..+.| ..||||||||+||||||..+|++||+|||||+||+
T Consensus 394 L~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP-----------~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDv 462 (539)
T COG1123 394 LRIHGGGSGAERRARVAELLELVGLPPEFLDRYP-----------HELSGGQRQRVAIARALALEPKLLILDEPVSALDV 462 (539)
T ss_pred HhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCH
Confidence 01111 1234666677777764 444444 48999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhccCchhHHHHHH
Q 000789 1213 ESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278 (1283)
Q Consensus 1213 ~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~ 1278 (1283)
-+.+.|.+.|.++.+ +.|.|+|||+++.++. ||||+||++|+|||.|+.+++.+.+...|.+....
T Consensus 463 svqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 463 SVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHH
Confidence 999999999988754 6899999999999998 99999999999999999999999888889876544
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-76 Score=729.33 Aligned_cols=533 Identities=22% Similarity=0.271 Sum_probs=461.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 53 MIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGL 132 (1283)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~ 132 (1283)
++..++++++..++....|++++.++|.+...... ..+..+.+.++++.++..++.++..++..+.+.++..++|.+
T Consensus 8 ~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 84 (544)
T TIGR01842 8 FIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSV---PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQP 84 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666777777888999999976422111 122223334444455667788888899999999999999999
Q ss_pred HHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000789 133 YLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGE-KVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIA 211 (1283)
Q Consensus 133 ~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~ 211 (1283)
+|+|++++|+. ..+...+++++|++.+++.+.. .+..++..++.++ .++++++++|.+++++++.+|+++++
T Consensus 85 ~~~~ll~~~~~------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i 157 (544)
T TIGR01842 85 IFAASFSATLR------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGL 157 (544)
T ss_pred HHHHHhcCccc------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999973 2356789999999999998876 4555555555444 44678999999999988888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 212 GGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIG 291 (1283)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1283)
..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+.....+....+..++..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (544)
T TIGR01842 158 ALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIV 237 (544)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888999999999999999999999999999999999999999998888888777777777766666666
Q ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcccCc
Q 000789 292 TYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKI 371 (1283)
Q Consensus 292 ~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 371 (1283)
..++++++|++++.+|.+|+|.+++++.++.....|+..+...+..++++..+.+|+.++++.+++.++.. ..+..
T Consensus 238 ~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~----~~~~~ 313 (544)
T TIGR01842 238 LQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM----PLPEP 313 (544)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC----CCCCC
Confidence 77778889999999999999999999999988899999999999999999999999999998655432111 11223
Q ss_pred cccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhc
Q 000789 372 EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451 (1283)
Q Consensus 372 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 451 (1283)
++.|+++||+|+|++. ++++|+|+||+++|||+++||||||||||||+++|+|+|+|++|+|.+||+++.+++.+++|+
T Consensus 314 ~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 314 EGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred CCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhh
Confidence 4679999999999743 347999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 452 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
.++||||+|++|++|++|||.++.++.++++++++++.++++++++++|+|+||.+||+|.+||||||||++||||++++
T Consensus 393 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred heEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999988777899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhc
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIK 600 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~ 600 (1283)
|++||||||||+||+++++.+.+.+.++. +++|+|+||||++.++.||+|++|++|++++.|+|+|+++
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999885 5799999999999998999999999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-78 Score=666.03 Aligned_cols=491 Identities=30% Similarity=0.424 Sum_probs=437.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Q 000789 116 SCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTF-FGGFVVALARG 194 (1283)
Q Consensus 116 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~ 194 (1283)
.++...++.....+--+.|.|+.++++.|+-++ .+|.+...+......|+..+...+...+..++-+ +.++++...++
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLER-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhc-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 345566777777888889999999999999877 8999988888888888777777776666666544 33455567789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 000789 195 WFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQ 274 (1283)
Q Consensus 195 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 274 (1283)
|+.++++++++.++.++......+.....+...++.+++++...+++-+..+||.|+.|+.+..+|.+.++.+.+...+.
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99999999998888887766666666667778888899999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000789 275 GMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKR 354 (1283)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~ 354 (1283)
..-.++....-..+......+....+...+..|.+|.|+++....++++...|+..++..+..+.++..-.++++++++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 66555555444455555566667778888999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCccc-CccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 000789 355 KPKIDPYDTSGITLE-KIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433 (1283)
Q Consensus 355 ~~~~~~~~~~~~~~~-~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 433 (1283)
+.+..+... .++.. ...|.+.|+||+|.|.. .+++|+|+||++++|+++|+|||||+||||++++|.|||++++|.
T Consensus 243 ~~~v~d~pd-a~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 243 EAEVSDAPD-APPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred chhhccCCC-CccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 776544322 22222 34578999999999974 468999999999999999999999999999999999999999999
Q ss_pred EEECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 000789 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQ 513 (1283)
Q Consensus 434 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~ 513 (1283)
|.+||+|+++...+++|+.||+||||..||++|+..||.||+|.++++|+..+++.+++++||+.+|+||+|.|||+|-.
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglk 399 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEec
Q 000789 514 LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKG 593 (1283)
Q Consensus 514 LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g 593 (1283)
||||||||+||||+++++|+||+|||+|||||.+||+.|+.+|++..+++|+++|+|||+|+.+||.|+||++|+|+|.|
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg 479 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERG 479 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhcCCCChhHHHHH
Q 000789 594 THDELIKDPEGPYTQLVR 611 (1283)
Q Consensus 594 ~~~~l~~~~~~~~~~~~~ 611 (1283)
+|+||++. +|.|++||.
T Consensus 480 ~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 480 THEELLAA-GGLYAEMWR 496 (497)
T ss_pred cHHHHHHc-CChHHHHhc
Confidence 99999998 999999985
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-75 Score=726.22 Aligned_cols=526 Identities=24% Similarity=0.315 Sum_probs=452.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 717 VLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSL 796 (1283)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~ 796 (1283)
.+.++++++++.+++.+..+++.+.+++....+... ......+..+++++.++..++.+++.++....+.++..++|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 82 (529)
T TIGR02857 4 ALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRER 82 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666667777777777654311111 1223345555666777788889999999999999999999999
Q ss_pred HHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000789 797 TFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQ 876 (1283)
Q Consensus 797 ~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~ 876 (1283)
+|+++++.|..||++ +++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.+++++++..|+.++.
T Consensus 83 l~~~l~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~ 160 (529)
T TIGR02857 83 LLAAVAALGPGWLQG--RPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIF 160 (529)
T ss_pred HHHHHHhCCchhhcc--CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999985 899999999999999999999988888888888888889999999999999999888888777
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000789 877 GYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYC 956 (1283)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1283)
.+...+..+...++.++...+..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..........+..++..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (529)
T TIGR02857 161 MILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATL 240 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777667777778888889999999999999999999999999999999888887777666665555555555555
Q ss_pred HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCccCCC
Q 000789 957 TNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSV 1036 (1283)
Q Consensus 957 ~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1283)
...+++.++++.+..|.+++|.++++..+......|+..+...+..+..+..+.+|+.++++.+++..... ..+ +..
T Consensus 241 ~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~--~~~-~~~ 317 (529)
T TIGR02857 241 SVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA--PVT-AAP 317 (529)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc--CCC-CCC
Confidence 55555556666677999999999999888888999999999999999999999999999997543221111 111 112
Q ss_pred cccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhc
Q 000789 1037 GGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116 (1283)
Q Consensus 1037 ~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~ 1116 (1283)
.+.|+|+||+|+||++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|+
T Consensus 318 ~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 318 APSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred CCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 3579999999999864 347999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHcc
Q 000789 1117 QMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLK 1196 (1283)
Q Consensus 1117 ~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~ 1196 (1283)
+++||||||++|++||||||.++. ++++|++++++++.++++++++++|+||||.+||+|.+||||||||++||||+++
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLAR-PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999974 4689999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEE
Q 000789 1197 NPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVV 1250 (1283)
Q Consensus 1197 ~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl 1250 (1283)
+|+|||||||||+||+++|+.|++.|++..+++|+|+||||+++++.||+|+||
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-75 Score=785.21 Aligned_cols=507 Identities=20% Similarity=0.288 Sum_probs=424.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 105 AGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFF 184 (1283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i 184 (1283)
++..++.++..++....+.+...++|.++++++++.|+.||+++ ++|++++|+++|++.+++.+...+..++..++.++
T Consensus 1009 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~-~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i 1087 (1560)
T PTZ00243 1009 LLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTT-PLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSIC 1087 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCC-CccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555556677788999999999999999999986 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHH
Q 000789 185 GGFVVALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKL 264 (1283)
Q Consensus 185 ~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~ 264 (1283)
+.++++++.+|.+.++++.++.++..+..++.+..++..+......+.+.+.+.|+++|+++||+|+.|+.+.++|.+..
T Consensus 1088 ~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~ 1167 (1560)
T PTZ00243 1088 SSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRL 1167 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHH
Confidence 88888998888554443333333344445556666666666677888899999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 265 QVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKL--IIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQ 342 (1283)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 342 (1283)
+...+..........+......++..+..+++.+++... ...+.+++|.+..++.+......++..+...+..+..+.
T Consensus 1168 d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~ 1247 (1560)
T PTZ00243 1168 DVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADM 1247 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877766655555555555544444433333334332 234457888887777887888889999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCCC-------------------------CCCC----cccCccccEEEEEEEEECCCCCCCccc
Q 000789 343 AAAYKMFETIKRKPKIDPYD-------------------------TSGI----TLEKIEGEIELRDVYFRYPARPEVQIF 393 (1283)
Q Consensus 343 ~a~~ri~~~l~~~~~~~~~~-------------------------~~~~----~~~~~~~~i~~~~v~f~y~~~~~~~~l 393 (1283)
.+.+|+.++++..|+.+... .... +.++..|.|+|+||+|+|+++ ..++|
T Consensus 1248 ~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL 1326 (1560)
T PTZ00243 1248 NSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVL 1326 (1560)
T ss_pred HHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCcee
Confidence 99999999997443221000 0000 011235789999999999753 34699
Q ss_pred ccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhc
Q 000789 394 AGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAY 473 (1283)
Q Consensus 394 ~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~ 473 (1283)
+||||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||.||+|||||||..
T Consensus 1327 ~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp 1406 (1560)
T PTZ00243 1327 RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDP 1406 (1560)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHH
Q 000789 474 GKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN-PKILLLDEATSALDAESERIV 552 (1283)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~-~~illlDE~ts~lD~~~~~~i 552 (1283)
+. +++++++++|++.+++++++.++|+||||.+||+|.+|||||||||||||||+++ |+|||||||||+||++|++.|
T Consensus 1407 ~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~I 1485 (1560)
T PTZ00243 1407 FL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI 1485 (1560)
T ss_pred cc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHH
Confidence 54 6889999999999999999999999999999999999999999999999999996 899999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCChhHHHHHHhh
Q 000789 553 QDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQE 614 (1283)
Q Consensus 553 ~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 614 (1283)
++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+.
T Consensus 1486 q~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1486 QATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999988899999999999999999999999999999999999999866899999987653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-75 Score=789.17 Aligned_cols=512 Identities=21% Similarity=0.293 Sum_probs=411.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHH
Q 000789 97 AVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKF 176 (1283)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~ 176 (1283)
...+++++++..++.+++.++....+.+...++|.+++++++++|++||+++ ++|++++|+++|++.+++.+...+..+
T Consensus 953 l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~-~~G~ilnr~s~Di~~id~~l~~~~~~~ 1031 (1495)
T PLN03232 953 IVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTN-PTGRVINRFSKDIGDIDRNVANLMNMF 1031 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcC-CchHHHHHhHhhHHHHHHHHHHHHHHH
Confidence 4445566666777888888888999999999999999999999999999976 999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHH
Q 000789 177 IQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAG-GSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQ 255 (1283)
Q Consensus 177 ~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 255 (1283)
+..++.+++++++++++++.. ++++++++++++.. .++.+..++..+......+...+.+.|+++|+++||+|+.++.
T Consensus 1032 ~~~~~~~i~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~ 1110 (1495)
T PLN03232 1032 MNQLWQLLSTFALIGTVSTIS-LWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDR 1110 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHH
Confidence 888888888887777777533 32222222222222 2233344445556667778889999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCc----c-HHHHHHHHHHHHHHHHHHH
Q 000789 256 AIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIE-KGY----N-GGTVINVIMAIMTGGMSLG 329 (1283)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~-~~~----t-~g~~~~~~~~~~~~~~~l~ 329 (1283)
+.+++.+..+...+..........+...... .+..+++++.|...+.. +.+ . .+.+..++.+......++.
T Consensus 1111 ~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 1187 (1495)
T PLN03232 1111 MAKINGKSMDNNIRFTLANTSSNRWLTIRLE---TLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLS 1187 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 7777766655554443322222222111111 11122222223333332 322 1 1222224455555667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCc--ccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEE
Q 000789 330 QTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGIT--LEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAA 407 (1283)
Q Consensus 330 ~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ 407 (1283)
.+...+..++.+..|.+|+.++++.+++.+.......+ .++.+|.|+|+||+|+|+++ .+++|+|+||+|+|||++|
T Consensus 1188 ~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~Gekva 1266 (1495)
T PLN03232 1188 GVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVG 1266 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEE
Confidence 88888899999999999999999876654321111111 12346789999999999643 2479999999999999999
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHH
Q 000789 408 LVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAI 487 (1283)
Q Consensus 408 ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~ 487 (1283)
||||||||||||+++|.|+|+|++|+|.|||+|+++++.+++|++|+||||||+||+|||||||.++. +++++++++|+
T Consensus 1267 IVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al 1345 (1495)
T PLN03232 1267 VVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEAL 1345 (1495)
T ss_pred EECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 58999999999
Q ss_pred HHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEE
Q 000789 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVV 567 (1283)
Q Consensus 488 ~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~ 567 (1283)
+.++++++++++|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+
T Consensus 1346 ~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~ 1425 (1495)
T PLN03232 1346 ERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLV 1425 (1495)
T ss_pred HHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCChhHHHHHHhhc
Q 000789 568 VAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEG 615 (1283)
Q Consensus 568 itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 615 (1283)
||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+..
T Consensus 1426 IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1426 IAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred EeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 999999999999999999999999999999998855799999976543
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-74 Score=711.98 Aligned_cols=535 Identities=22% Similarity=0.294 Sum_probs=453.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 717 VLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSL 796 (1283)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~ 796 (1283)
.++...+++++..++....++++..+++......+ ......+..+++++.++..++.+++.++....+.++..++|.+
T Consensus 7 ~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 84 (544)
T TIGR01842 7 TFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQP 84 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555566666654432111 1122334445555666777888889999999999999999999
Q ss_pred HHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000789 797 TFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGD-SLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLV 875 (1283)
Q Consensus 797 ~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~ 875 (1283)
+|+++++.|+.. .+...+++.+|++.+++.+.. .+..++..++.++ .+++++.++|++++++++..|++++
T Consensus 85 ~~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~ 156 (544)
T TIGR01842 85 IFAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVG 156 (544)
T ss_pred HHHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999843 245688899999999988776 4555555545444 4467788999999988888888777
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHH
Q 000789 876 QGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLY 955 (1283)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1283)
..++..+..++..++.++...+..+.+.|.++|+++||+|+.++.+.++|.+..++..+...+.....+....+..++..
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (544)
T TIGR01842 157 LALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRI 236 (544)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666677676677777888888999999999999999999999999999999999888888777777777777777777
Q ss_pred HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCccCC
Q 000789 956 CTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSS 1035 (1283)
Q Consensus 956 ~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~ 1035 (1283)
+..++++++|++++..|.+++|.++++..+......|+..+...+..+..+..+.+|+.++++.+++.... .+.+.
T Consensus 237 ~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~~~ 312 (544)
T TIGR01842 237 VLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPLPE 312 (544)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CCCCC
Confidence 77788889999999999999999999999999999999999999999999999999999999765543211 11122
Q ss_pred CcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHh
Q 000789 1036 VGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLR 1115 (1283)
Q Consensus 1036 ~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR 1115 (1283)
..+.|+++||+|+|++. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+.+++.+.+|
T Consensus 313 ~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~ 391 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391 (544)
T ss_pred CCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHh
Confidence 34579999999999753 34799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHc
Q 000789 1116 QQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVL 1195 (1283)
Q Consensus 1116 ~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll 1195 (1283)
++++||||||.+|++|++|||.++. +++++++++++++.++++++++++|+|+||.+||+|.+|||||||||+||||++
T Consensus 392 ~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 392 KHIGYLPQDVELFPGTVAENIARFG-ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hheEEecCCcccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999763 458999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhc
Q 000789 1196 KNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1196 ~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
++|+|||||||||+||+++++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|+||+++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 9999999999999999999999999999875 68999999999999999999999999999999999999863
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-73 Score=701.32 Aligned_cols=535 Identities=17% Similarity=0.139 Sum_probs=445.2
Q ss_pred hhHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 36 VPFYKLFAFAD-KQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQ 114 (1283)
Q Consensus 36 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1283)
..+++++++++ ++ +..++++++++++.++.....|++++.++|....... .. ..+++++.++.+++.++.
T Consensus 3 ~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~ 73 (555)
T TIGR01194 3 AAIGEILALLRSPF-PAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQ----GS----LFSFGGLCLLALLFRIGA 73 (555)
T ss_pred chHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc----hH----HHHHHHHHHHHHHHHHHH
Confidence 45778888887 65 4456677777777788888888888888874211100 01 112333445556778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000789 115 VSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARG 194 (1283)
Q Consensus 115 ~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 194 (1283)
.++....+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++.. +..++..++++++.++++++++
T Consensus 74 ~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 151 (555)
T TIGR01194 74 DIFPAYAGMHIIANLRIALCEKILGAPIEEIDRR-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLS 151 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhc-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999986 9999999999999999998864 6777888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH--HHHHHHHHHHHHHHHHHH
Q 000789 195 WFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEK--QAIEKYNNKLQVAYRAAV 272 (1283)
Q Consensus 195 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~~~~~~~~~~ 272 (1283)
|.+++++++++|+.+++..++.++.++...+.++..++.++.+.|.+.|+++||+|+.++ .+.++|.+..++..+...
T Consensus 152 ~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
T TIGR01194 152 VPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHI 231 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999998888888888788888888888889999999999999999999999999954 567888888888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 273 QQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETI 352 (1283)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l 352 (1283)
+.........++..++..+...+++++|++. +.++.|++++++++......|+..+...+..++++.++++|+.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll 308 (555)
T TIGR01194 232 IEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFG 308 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555544444444444444455555543 6899999999999999999999999999999999999999999998
Q ss_pred ccCCC---CCC-CCCCCC---cccCccccEEEEEEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHH
Q 000789 353 KRKPK---IDP-YDTSGI---TLEKIEGEIELRDVYFRYPARP--EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLV 423 (1283)
Q Consensus 353 ~~~~~---~~~-~~~~~~---~~~~~~~~i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll 423 (1283)
+.+++ ..+ ...... ++....+.|+++||+|+|++.+ +.++|+|+||++++||++|||||||||||||+++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll 388 (555)
T TIGR01194 309 ERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLF 388 (555)
T ss_pred hhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHH
Confidence 63211 110 000000 1112246799999999997532 23699999999999999999999999999999999
Q ss_pred HcCCCCCCceEEECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCc
Q 000789 424 ERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGL 503 (1283)
Q Consensus 424 ~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~ 503 (1283)
+|+|+|++|+|.+||+|+++++.+++|++++||+||+++|++|+++|+ .+++++++++++++.++++++++.+|+||
T Consensus 389 ~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~ 465 (555)
T TIGR01194 389 CGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGF 465 (555)
T ss_pred hCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhccccccc
Confidence 999999999999999999999999999999999999999999999995 45678899999999999999999999999
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HH-cCCCeEEEEecCchhhhccCEE
Q 000789 504 DTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALV-KI-MTSRTTVVVAHRLTTIRNADLI 581 (1283)
Q Consensus 504 ~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~-~~-~~~~t~i~itH~l~~~~~~d~i 581 (1283)
||. .+|||||||||+||||++++|+|||||||||+||+++++.+++.+. .+ .+++|+|+||||+++++.||+|
T Consensus 466 ~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i 540 (555)
T TIGR01194 466 STT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQI 540 (555)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEE
Confidence 994 7899999999999999999999999999999999999999988764 34 3589999999999999999999
Q ss_pred EEEeCCEEeEe
Q 000789 582 AVVHQGKIVEK 592 (1283)
Q Consensus 582 ~vl~~G~i~~~ 592 (1283)
++|++|+|+|.
T Consensus 541 ~~l~~G~i~~~ 551 (555)
T TIGR01194 541 IKLAAGCIVKD 551 (555)
T ss_pred EEEECCEEEEe
Confidence 99999999874
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-74 Score=722.49 Aligned_cols=499 Identities=25% Similarity=0.378 Sum_probs=370.1
Q ss_pred cEEEEEEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccC----------
Q 000789 374 EIELRDVYFRYPARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIK---------- 442 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~---------- 442 (1283)
-|+++|++++|+... ..++|+||||++++||++|||||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996321 246999999999999999999999999999999999999999999999997542
Q ss_pred CCCHH---HHh-cccEEEccCC--CCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCcc---ccccC
Q 000789 443 KLQLK---WIR-EKIGLVSQEP--ILFA-TSLRENIAYGKE---NATDQEIRTAIELANAAKFIDKLPKGLD---TMAGE 509 (1283)
Q Consensus 443 ~~~~~---~~r-~~i~~v~Q~~--~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~---t~~~~ 509 (1283)
+.+.. .+| ++||||+|+| .+++ .||+||+.++.. ..+..+.. ..+.+.++.+ |+. .....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~ 164 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM-----VEAKRMLDQV--RIPEAQTILSR 164 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChhhHHhC
Confidence 22222 233 4799999998 5776 499999987531 12222211 1223444444 553 34567
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeC
Q 000789 510 HGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQ 586 (1283)
Q Consensus 510 ~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~ 586 (1283)
...+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||+|++|++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~ 244 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence 7889999999999999999999999999999999999999999999999853 7899999999999866 999999999
Q ss_pred CEEeEecChhHHhcCCCChhHHHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCcc
Q 000789 587 GKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSF 666 (1283)
Q Consensus 587 G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1283)
|+|++.|++++++..+...|.+-.... . +.. .. .
T Consensus 245 G~i~~~g~~~~~~~~~~~~~~~~l~~~-----------------~-----------~~~------~~-~----------- 278 (623)
T PRK10261 245 GEAVETGSVEQIFHAPQHPYTRALLAA-----------------V-----------PQL------GA-M----------- 278 (623)
T ss_pred CeecccCCHHHhhcCCCChhhhhhhhc-----------------c-----------Ccc------cc-c-----------
Confidence 999999999888654222221100000 0 000 00 0
Q ss_pred ccccCCCCCCCccccccCCCCCCCCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000789 667 GFTYGVPGPINVFETEEGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMF 746 (1283)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1283)
.+ . .
T Consensus 279 ------~~---------~--~----------------------------------------------------------- 282 (623)
T PRK10261 279 ------KG---------L--D----------------------------------------------------------- 282 (623)
T ss_pred ------cc---------c--c-----------------------------------------------------------
Confidence 00 0 0
Q ss_pred cCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhh
Q 000789 747 FEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTD 826 (1283)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D 826 (1283)
.+ .-+.. ..
T Consensus 283 ---------------------------------------------------------~~-~~~~~--~~----------- 291 (623)
T PRK10261 283 ---------------------------------------------------------YP-RRFPL--IS----------- 291 (623)
T ss_pred ---------------------------------------------------------CC-ccccc--cc-----------
Confidence 00 00000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000789 827 ASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAV 906 (1283)
Q Consensus 827 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 906 (1283)
T Consensus 292 -------------------------------------------------------------------------------- 291 (623)
T PRK10261 292 -------------------------------------------------------------------------------- 291 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHH
Q 000789 907 GSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFAL 986 (1283)
Q Consensus 907 ~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~ 986 (1283)
. ...
T Consensus 292 ------------------------~-~~~--------------------------------------------------- 295 (623)
T PRK10261 292 ------------------------L-EHP--------------------------------------------------- 295 (623)
T ss_pred ------------------------c-ccc---------------------------------------------------
Confidence 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCC--------Ccccc
Q 000789 987 TISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRP--------DVQIF 1058 (1283)
Q Consensus 987 ~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~--------~~~vL 1058 (1283)
+ ...++...... +....-|+++||+++|+.+. ...+|
T Consensus 296 -------------------------~----~~~~~~~~~~~------~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l 340 (623)
T PRK10261 296 -------------------------A----KQEPPIEQDTV------VDGEPILQVRNLVTRFPLRSGLLNRVTREVHAV 340 (623)
T ss_pred -------------------------c----ccCcccccccc------cCCCceEEEeeeEEEEcCCCccccccCCceEEE
Confidence 0 00000000000 00012499999999996321 23699
Q ss_pred cceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChH---HHhcceEEEccCC--CCC-hhhH
Q 000789 1059 RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLS---WLRQQMGLVSQEP--VLF-NETI 1132 (1283)
Q Consensus 1059 ~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR~~i~~V~Qdp--~Lf-~gTI 1132 (1283)
+||||+|++||++||+|+||||||||+++|+|+.+|++|+|.++|.++...+.. .+|++|+||||+| .++ ..|+
T Consensus 341 ~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv 420 (623)
T PRK10261 341 EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTV 420 (623)
T ss_pred eeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCH
Confidence 999999999999999999999999999999999999999999999999876543 4678899999998 366 4699
Q ss_pred HHHHhcCCC-CCC-C----HHHHHHHHHHhChH-HHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000789 1133 RTNIAYGKQ-GGA-T----EEEIIAATEASNAH-NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDE 1205 (1283)
Q Consensus 1133 reNl~~g~~-~~~-s----d~ei~~al~~a~l~-~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDE 1205 (1283)
.||+.++.. ... + .+++.+.++.+++. +.... ...+||||||||++|||||+.+|+||||||
T Consensus 421 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~-----------~~~~LSgGqrQRv~iAraL~~~p~llllDE 489 (623)
T PRK10261 421 GDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR-----------YPHEFSGGQRQRICIARALALNPKVIIADE 489 (623)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999975310 011 1 23455566666663 33322 234799999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhccCchhHH
Q 000789 1206 ATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITDGAYAS 1274 (1283)
Q Consensus 1206 aTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1274 (1283)
|||+||+.+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++...+...|.+
T Consensus 490 Pts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 490 AVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHH
Confidence 9999999999999999988753 6899999999999976 9999999999999999999998765566654
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-74 Score=706.41 Aligned_cols=463 Identities=21% Similarity=0.371 Sum_probs=359.3
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCceEEECCcccCCCCHHH-Hh
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP--DAGEVLIDGIDIKKLQLKW-IR 450 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~-~r 450 (1283)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 3699999999999999999999999999999999999996 8999999999998766543 46
Q ss_pred cccEEEccCCCCCcc-cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000789 451 EKIGLVSQEPILFAT-SLRENIAYGKEN-----ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAI 524 (1283)
Q Consensus 451 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriai 524 (1283)
+.++||+|++.+|.. |++||+.++... .+.++..+ .+.++++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 789999999988865 999999986431 12222111 234556665 66666677788999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCC
Q 000789 525 ARAILKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDP 602 (1283)
Q Consensus 525 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 602 (1283)
||||+.+|+|||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~- 233 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTED- 233 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHH-
Confidence 999999999999999999999999999999999875 46899999999999876 999999999999987753322100
Q ss_pred CChhHHHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCccccccCCCCCCCccccc
Q 000789 603 EGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETE 682 (1283)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1283)
+...
T Consensus 234 -----~~~~----------------------------------------------------------------------- 237 (506)
T PRK13549 234 -----DIIT----------------------------------------------------------------------- 237 (506)
T ss_pred -----HHHH-----------------------------------------------------------------------
Confidence 0000
Q ss_pred cCCCCCCCCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHH
Q 000789 683 EGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWAL 762 (1283)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1283)
.
T Consensus 238 --------------------------------------------------------------~----------------- 238 (506)
T PRK13549 238 --------------------------------------------------------------M----------------- 238 (506)
T ss_pred --------------------------------------------------------------H-----------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000789 763 IYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVV 842 (1283)
Q Consensus 763 ~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~ 842 (1283)
. +.. .
T Consensus 239 --------------------------------------~-------~~~-~----------------------------- 243 (506)
T PRK13549 239 --------------------------------------M-------VGR-E----------------------------- 243 (506)
T ss_pred --------------------------------------h-------hCc-C-----------------------------
Confidence 0 000 0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHH
Q 000789 843 QNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVM 922 (1283)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~ 922 (1283)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 923 DLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPD 1002 (1283)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1283)
. .
T Consensus 244 ---------------------------------------------------~--~------------------------- 245 (506)
T PRK13549 244 ---------------------------------------------------L--T------------------------- 245 (506)
T ss_pred ---------------------------------------------------c--c-------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHH
Q 000789 1003 TTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKS 1082 (1283)
Q Consensus 1003 ~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKS 1082 (1283)
+ ..+..... + ....|+++||+++|+.....++|+|+||+|++||++||+|+||||||
T Consensus 246 ---------~------~~~~~~~~-------~-~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKS 302 (506)
T PRK13549 246 ---------A------LYPREPHT-------I-GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRT 302 (506)
T ss_pred ---------c------cccccccC-------C-CCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHH
Confidence 0 00000000 0 01148999999999532134699999999999999999999999999
Q ss_pred HHHHHHhccCC-CCcceEEECCccCCCCCh-HHHhcceEEEccCC---CCC-hhhHHHHHhcCCCCC------CCHHHHH
Q 000789 1083 TVIALIERFYD-PDSGHVLLDNIELPKFKL-SWLRQQMGLVSQEP---VLF-NETIRTNIAYGKQGG------ATEEEII 1150 (1283)
Q Consensus 1083 TL~~lL~rl~~-~~~G~I~idG~di~~~~~-~~lR~~i~~V~Qdp---~Lf-~gTIreNl~~g~~~~------~sd~ei~ 1150 (1283)
||+++|+|+++ |++|+|.++|.++...+. +.+|+.++||||+| .+| ..|+.||+.++.... .+.++..
T Consensus 303 TLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 382 (506)
T PRK13549 303 ELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAEL 382 (506)
T ss_pred HHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHH
Confidence 99999999999 599999999999865443 45677899999996 355 569999997642100 1111111
Q ss_pred HHHHHhChHHHHHhCCCCccc-ccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CC
Q 000789 1151 AATEASNAHNFISALPHGYET-NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VN 1228 (1283)
Q Consensus 1151 ~al~~a~l~~~I~~lp~Gldt-~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~ 1228 (1283)
..+.++++.+ |++. ........||||||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. ++
T Consensus 383 -----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g 455 (506)
T PRK13549 383 -----KTILESIQRL--KVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQG 455 (506)
T ss_pred -----HHHHHHHHhc--CccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCC
Confidence 1123344443 2321 2334445899999999999999999999999999999999999999999998864 47
Q ss_pred ceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHH
Q 000789 1229 RTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1229 ~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
+|||+|||+++.+.. ||++++|++|+++..|+++++.
T Consensus 456 ~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 456 VAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred CEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 899999999999876 9999999999999999888763
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-73 Score=704.27 Aligned_cols=468 Identities=26% Similarity=0.453 Sum_probs=359.3
Q ss_pred cEEEEEEEEECCCC-CCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccCCCCHH
Q 000789 374 EIELRDVYFRYPAR-PEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIKKLQLK 447 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~-~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~~~ 447 (1283)
.|+++||+++|++. ...++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|+++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999631 124699999999999999999999999999999999999987 799999999999876643
Q ss_pred H---Hh-cccEEEccCCC--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccc---cccCCCCCC
Q 000789 448 W---IR-EKIGLVSQEPI--LFA-TSLRENIAYGK---ENATDQEIRTAIELANAAKFIDKLPKGLDT---MAGEHGTQL 514 (1283)
Q Consensus 448 ~---~r-~~i~~v~Q~~~--l~~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t---~~~~~g~~L 514 (1283)
. +| ++||||+|++. +++ .|+.+|+.++. ...+.++.. ..+++.++.+ |++. .......+|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAAR-----GEILNCLDRV--GIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChHHHHhhCCccc
Confidence 2 33 57999999985 444 48999987421 111222111 1122344444 5532 245667899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEeE
Q 000789 515 SGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVE 591 (1283)
Q Consensus 515 SgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~ 591 (1283)
|||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 36899999999999875 99999999999999
Q ss_pred ecChhHHhcCCCChhHHHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCccccccC
Q 000789 592 KGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYG 671 (1283)
Q Consensus 592 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1283)
.|++++++..+...+.
T Consensus 238 ~g~~~~~~~~~~~~~~---------------------------------------------------------------- 253 (529)
T PRK15134 238 QNRAATLFSAPTHPYT---------------------------------------------------------------- 253 (529)
T ss_pred eCCHHHHhhCCCCHHH----------------------------------------------------------------
Confidence 8887665421000000
Q ss_pred CCCCCCccccccCCCCCCCCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 000789 672 VPGPINVFETEEGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPED 751 (1283)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (1283)
..
T Consensus 254 ---------------------------------~~--------------------------------------------- 255 (529)
T PRK15134 254 ---------------------------------QK--------------------------------------------- 255 (529)
T ss_pred ---------------------------------HH---------------------------------------------
Confidence 00
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHH
Q 000789 752 KLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIR 831 (1283)
Q Consensus 752 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~ 831 (1283)
+ +.. . +
T Consensus 256 -------------------------------------------------~-------~~~-~-~---------------- 261 (529)
T PRK15134 256 -------------------------------------------------L-------LNS-E-P---------------- 261 (529)
T ss_pred -------------------------------------------------H-------HHh-C-c----------------
Confidence 0 000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000789 832 SLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRT 911 (1283)
Q Consensus 832 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~t 911 (1283)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHH
Q 000789 912 VASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISAL 991 (1283)
Q Consensus 912 Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~ 991 (1283)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCC--------CCcccccceeE
Q 000789 992 GVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTR--------PDVQIFRNLCL 1063 (1283)
Q Consensus 992 ~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~--------~~~~vL~~is~ 1063 (1283)
+ ..+.. .. .. ...-|+++||+++|+.. .+.++|+|+||
T Consensus 262 --------------------~------~~~~~-~~-~~------~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl 307 (529)
T PRK15134 262 --------------------S------GDPVP-LP-EP------ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISF 307 (529)
T ss_pred --------------------c------ccccc-cC-CC------CCCcccccCcEEEeecCccccccccccceeeeccee
Confidence 0 00000 00 00 01148999999999621 12469999999
Q ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChH---HHhcceEEEccCC--CCCh-hhHHHHHh
Q 000789 1064 SIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLS---WLRQQMGLVSQEP--VLFN-ETIRTNIA 1137 (1283)
Q Consensus 1064 ~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR~~i~~V~Qdp--~Lf~-gTIreNl~ 1137 (1283)
+|++||++||+|+||||||||+++|+|+++ ++|+|.+||.++...+.. .+|++++||||++ .+|. .|++||+.
T Consensus 308 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~ 386 (529)
T PRK15134 308 TLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIE 386 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHH
Confidence 999999999999999999999999999984 899999999998776643 3578899999998 3664 69999997
Q ss_pred cCCC-C--CCC----HHHHHHHHHHhChH-HHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCC
Q 000789 1138 YGKQ-G--GAT----EEEIIAATEASNAH-NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSA 1209 (1283)
Q Consensus 1138 ~g~~-~--~~s----d~ei~~al~~a~l~-~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSa 1209 (1283)
++.. . ..+ ++++.++++..++. +. ......+||||||||++|||||+.+|+||||||||++
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 455 (529)
T PRK15134 387 EGLRVHQPTLSAAQREQQVIAVMEEVGLDPET-----------RHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSS 455 (529)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHcCCCHHH-----------HhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccc
Confidence 6411 0 111 23344555555543 22 2233458999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhccCc
Q 000789 1210 LDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITDG 1270 (1283)
Q Consensus 1210 LD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~~g 1270 (1283)
||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++++.+..
T Consensus 456 LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 519 (529)
T PRK15134 456 LDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQ 519 (529)
T ss_pred cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCCCC
Confidence 999999999999998753 7899999999999876 999999999999999999999865333
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-71 Score=708.09 Aligned_cols=510 Identities=24% Similarity=0.357 Sum_probs=438.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHH
Q 000789 96 VAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGK 175 (1283)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~ 175 (1283)
+...+.+++++..++..++.+.+...+.+.+.+++.+++++++|.|++|||.+ ++|.++||+++|++.+++.+...+..
T Consensus 860 ~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtT-P~GRILNRFSkD~~~vD~~Lp~~~~~ 938 (1381)
T KOG0054|consen 860 YLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTT-PTGRILNRFSKDIDTVDVLLPFTLEF 938 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCC-CccchhhhcccchHHHHHhhHHHHHH
Confidence 34556666777778888888888999999999999999999999999999986 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHH
Q 000789 176 FIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQ 255 (1283)
Q Consensus 176 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 255 (1283)
++..++.+++.++++.+..|+..++++.+..+++.+..++.+..+...+-.....+...+++.|+++|+.|||+|+.|++
T Consensus 939 ~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~r 1018 (1381)
T KOG0054|consen 939 FLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEER 1018 (1381)
T ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHH
Confidence 99999999999999999999888877777777777777777777777777777788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 256 AIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCL 335 (1283)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~ 335 (1283)
+.+++....+...+...-......+...-+.++..+....+..+.. +...+..++|.+--.+.|.+.....+..+....
T Consensus 1019 f~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~v-l~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~ 1097 (1381)
T KOG0054|consen 1019 FIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAV-LLPSGLISPGLVGLSLSYALQLTGLLQWLVRQS 1097 (1381)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888877765544333333333333333322222221111 111222567777777788888777777777778
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCCCCC-C--CCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCC
Q 000789 336 NAFAGGQAAAYKMFETIKRKPKIDPYDT-S--GITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQS 412 (1283)
Q Consensus 336 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~-~--~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~s 412 (1283)
..+.....|.+|+.++.+.++| .+... . .++.++.+|+|+|+|++.+|.+. ..+||+||||+|+|||++||||++
T Consensus 1098 ~elEn~m~SVERv~eY~~~~~E-~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRT 1175 (1381)
T KOG0054|consen 1098 SELENNMVSVERVLEYTDIPSE-APLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRT 1175 (1381)
T ss_pred HHHHhcchhhhHHHHHhcCCCC-CCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCC
Confidence 8888889999999999996665 22111 1 23345678999999999999654 357999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcH
Q 000789 413 GSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANA 492 (1283)
Q Consensus 413 GsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~ 492 (1283)
|||||||+++|.|+.+|.+|+|.|||+||.++..+.||++++++||||.||+||+|.|+.-. ...+|+++|+|++.|++
T Consensus 1176 GaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf-~e~sD~~IW~ALe~~~L 1254 (1381)
T KOG0054|consen 1176 GAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF-DEYSDDEIWEALERCQL 1254 (1381)
T ss_pred CCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc-cccCHHHHHHHHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999854 35789999999999999
Q ss_pred HHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 000789 493 AKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRL 572 (1283)
Q Consensus 493 ~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l 572 (1283)
.++++++|.|+|+.+.|+|.|+|-||||.+||||||+++++||+|||||+++|++|...||+.|++..+++|||.|+||+
T Consensus 1255 k~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl 1334 (1381)
T KOG0054|consen 1255 KDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRL 1334 (1381)
T ss_pred HHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCEEEEEeCCEEeEecChhHHhcCCCChhHHHH
Q 000789 573 TTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610 (1283)
Q Consensus 573 ~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 610 (1283)
+++.++|||+|||+|+|+|.|+|.+|++++++.|+++.
T Consensus 1335 ~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l 1372 (1381)
T KOG0054|consen 1335 NTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLL 1372 (1381)
T ss_pred chhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHH
Confidence 99999999999999999999999999998778876544
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-73 Score=614.45 Aligned_cols=471 Identities=31% Similarity=0.482 Sum_probs=368.8
Q ss_pred cEEEEEEEEECCC-CCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccCCCCHH
Q 000789 374 EIELRDVYFRYPA-RPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIKKLQLK 447 (1283)
Q Consensus 374 ~i~~~~v~f~y~~-~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~~~ 447 (1283)
-++++|++..|.. .....++++|||+|++||++||||+||||||-..+.++|+++- -+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 4788999988752 2345799999999999999999999999999999999999864 379999999999888887
Q ss_pred HHhc----ccEEEccCCC--CCc-ccH----HHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 000789 448 WIRE----KIGLVSQEPI--LFA-TSL----RENIAYGKE---NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQ 513 (1283)
Q Consensus 448 ~~r~----~i~~v~Q~~~--l~~-~ti----~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~ 513 (1283)
.+|. +|+++||||. |-+ -|| .|-|.+-.. .+..+++.+.++.+++.+- .-.+...+.+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhCCcc
Confidence 7764 7999999995 222 144 444444221 1123344455555544221 1234556679
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEe
Q 000789 514 LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIV 590 (1283)
Q Consensus 514 LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~ 590 (1283)
|||||||||.||.||+.+|++||-||||.|||.....+|.+.|+++.+ +..+++|||+|..+++ ||||+||.+|+|+
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999999864 6799999999999987 9999999999999
Q ss_pred EecChhHHhcCCCChhHHHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCcccccc
Q 000789 591 EKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTY 670 (1283)
Q Consensus 591 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1283)
|.|+.+++++.|...|.+..-..+. .....
T Consensus 238 E~~~t~~lF~~PqHpYTr~Ll~aeP----------------------------~g~~~---------------------- 267 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKLLAAEP----------------------------SGDPP---------------------- 267 (534)
T ss_pred ecCcHHHHhhCCCChHHHHHHhcCC----------------------------CCCCC----------------------
Confidence 9999999999887777764421100 00000
Q ss_pred CCCCCCCccccccCCCCCCCCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000789 671 GVPGPINVFETEEGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPE 750 (1283)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1283)
+.+ +.
T Consensus 268 --p~~-------~~------------------------------------------------------------------ 272 (534)
T COG4172 268 --PLP-------ED------------------------------------------------------------------ 272 (534)
T ss_pred --CCC-------CC------------------------------------------------------------------
Confidence 000 00
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHH
Q 000789 751 DKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTI 830 (1283)
Q Consensus 751 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i 830 (1283)
T Consensus 273 -------------------------------------------------------------------------------- 272 (534)
T COG4172 273 -------------------------------------------------------------------------------- 272 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 000789 831 RSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIR 910 (1283)
Q Consensus 831 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ 910 (1283)
T Consensus 273 -------------------------------------------------------------------------------- 272 (534)
T COG4172 273 -------------------------------------------------------------------------------- 272 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHH
Q 000789 911 TVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISA 990 (1283)
Q Consensus 911 tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~ 990 (1283)
T Consensus 273 -------------------------------------------------------------------------------- 272 (534)
T COG4172 273 -------------------------------------------------------------------------------- 272 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCC--------CCccccccee
Q 000789 991 LGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTR--------PDVQIFRNLC 1062 (1283)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~--------~~~~vL~~is 1062 (1283)
...-++.+||...||-+ ....+.++||
T Consensus 273 ---------------------------------------------~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~is 307 (534)
T COG4172 273 ---------------------------------------------APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGIS 307 (534)
T ss_pred ---------------------------------------------CCceEEecceEEEEecCCccccccchheEEeccce
Confidence 00012222222222110 0124789999
Q ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHH---HhcceEEEccCCC--C-ChhhHHHHH
Q 000789 1063 LSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW---LRQQMGLVSQEPV--L-FNETIRTNI 1136 (1283)
Q Consensus 1063 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---lR~~i~~V~Qdp~--L-f~gTIreNl 1136 (1283)
|+.++||++||||.|||||||+-.+|+|+.+++ |+|.++|.++...+.+. +|+++-+|+|||+ | -..||.+-|
T Consensus 308 l~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII 386 (534)
T COG4172 308 LTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQII 386 (534)
T ss_pred eEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHh
Confidence 999999999999999999999999999999876 99999999999888665 6799999999996 2 245776666
Q ss_pred hcCC---CCCC----CHHHHHHHHHHhChHHHHH-hCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccC
Q 000789 1137 AYGK---QGGA----TEEEIIAATEASNAHNFIS-ALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATS 1208 (1283)
Q Consensus 1137 ~~g~---~~~~----sd~ei~~al~~a~l~~~I~-~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTS 1208 (1283)
.=|. .+.. .++.+.+|++.+|++.-.. +.| ..+|||||||||||||++-+|++++||||||
T Consensus 387 ~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP-----------hEFSGGQRQRIAIARAliLkP~~i~LDEPTS 455 (534)
T COG4172 387 EEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP-----------HEFSGGQRQRIAIARALILKPELILLDEPTS 455 (534)
T ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC-----------cccCcchhhHHHHHHHHhcCCcEEEecCCch
Confidence 4331 1123 3566888999998875432 233 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhccCchhHH
Q 000789 1209 ALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITDGAYAS 1274 (1283)
Q Consensus 1209 aLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1274 (1283)
+||-.-...|.+.|+++- .+-+-++|+|+|..++. ||+|+||.+|+|||+|..+++++++...|.+
T Consensus 456 ALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 456 ALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred HhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHH
Confidence 999999999999998874 36799999999999998 9999999999999999999999998888865
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-73 Score=697.17 Aligned_cols=460 Identities=22% Similarity=0.358 Sum_probs=354.3
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHH-Hhcc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW-IREK 452 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 452 (1283)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 36999999999999999999999999999999999999999999999999998777554 3467
Q ss_pred cEEEccCCCCCcc-cHHHHHhcCCCCC---------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000789 453 IGLVSQEPILFAT-SLRENIAYGKENA---------TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRI 522 (1283)
Q Consensus 453 i~~v~Q~~~l~~~-ti~~ni~~~~~~~---------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri 522 (1283)
++||+|++.++.. |++||+.++.... +.++.. ..+.+.++.+ |++........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMR-----VRAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 9999999988875 9999998764210 111111 1233455555 666566777789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhc
Q 000789 523 AIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600 (1283)
Q Consensus 523 aiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 600 (1283)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 999999999999999999999999999999999998754 6899999999999876 99999999999998876554321
Q ss_pred CCCChhHHHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCccccccCCCCCCCccc
Q 000789 601 DPEGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFE 680 (1283)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1283)
. ++.. .
T Consensus 235 ~------~~~~---------~----------------------------------------------------------- 240 (510)
T PRK09700 235 D------DIVR---------L----------------------------------------------------------- 240 (510)
T ss_pred H------HHHH---------H-----------------------------------------------------------
Confidence 0 0000 0
Q ss_pred cccCCCCCCCCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHH
Q 000789 681 TEEGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFW 760 (1283)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (1283)
T Consensus 241 -------------------------------------------------------------------------------- 240 (510)
T PRK09700 241 -------------------------------------------------------------------------------- 240 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHH
Q 000789 761 ALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLAL 840 (1283)
Q Consensus 761 ~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~ 840 (1283)
+ +.....
T Consensus 241 ----------------------------------------~-------~~~~~~-------------------------- 247 (510)
T PRK09700 241 ----------------------------------------M-------VGRELQ-------------------------- 247 (510)
T ss_pred ----------------------------------------h-------cCCCcc--------------------------
Confidence 0 000000
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHH
Q 000789 841 VVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEK 920 (1283)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~ 920 (1283)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 921 VMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMA 1000 (1283)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1000 (1283)
.
T Consensus 248 -------------~------------------------------------------------------------------ 248 (510)
T PRK09700 248 -------------N------------------------------------------------------------------ 248 (510)
T ss_pred -------------c------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCC
Q 000789 1001 PDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSG 1080 (1283)
Q Consensus 1001 ~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSG 1080 (1283)
+ .....+... .. . ....|+++|+++.|. .+|+|+||+|++||++||+||||||
T Consensus 249 -----------~---~~~~~~~~~--~~-----~-~~~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsG 301 (510)
T PRK09700 249 -----------R---FNAMKENVS--NL-----A-HETVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSG 301 (510)
T ss_pred -----------c---ccccccccc--cC-----C-CCcEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCC
Confidence 0 000000000 00 0 011499999999763 2899999999999999999999999
Q ss_pred HHHHHHHHhccCCCCcceEEECCccCCCCCh-HHHhcceEEEccCC---CCCh-hhHHHHHhcCCCC---------C-CC
Q 000789 1081 KSTVIALIERFYDPDSGHVLLDNIELPKFKL-SWLRQQMGLVSQEP---VLFN-ETIRTNIAYGKQG---------G-AT 1145 (1283)
Q Consensus 1081 KSTL~~lL~rl~~~~~G~I~idG~di~~~~~-~~lR~~i~~V~Qdp---~Lf~-gTIreNl~~g~~~---------~-~s 1145 (1283)
||||+++|+|+++|++|+|.++|.++...+. ..+|+.++||||++ .+|. .|++||+.++... . .+
T Consensus 302 KSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 381 (510)
T PRK09700 302 RTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFH 381 (510)
T ss_pred HHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccC
Confidence 9999999999999999999999999866543 45678999999984 4664 5999999865210 0 01
Q ss_pred HHHHHHHHHHhChHHHHHhCCCCcc-cccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHH
Q 000789 1146 EEEIIAATEASNAHNFISALPHGYE-TNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224 (1283)
Q Consensus 1146 d~ei~~al~~a~l~~~I~~lp~Gld-t~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~ 1224 (1283)
..+. ...+.+.++.+ |+. .........||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|++
T Consensus 382 ~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 454 (510)
T PRK09700 382 EVDE-----QRTAENQRELL--ALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQ 454 (510)
T ss_pred hHHH-----HHHHHHHHHhc--CCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHH
Confidence 1110 01122333333 222 122333457999999999999999999999999999999999999999999988
Q ss_pred Hc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHH
Q 000789 1225 VM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDA 1263 (1283)
Q Consensus 1225 ~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~e 1263 (1283)
+. +++|+|+|||+++.+.. ||+|++|++|++++.+++.+
T Consensus 455 l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 455 LADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred HHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecCcc
Confidence 64 47899999999998865 99999999999999887633
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-70 Score=739.78 Aligned_cols=500 Identities=18% Similarity=0.260 Sum_probs=413.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 106 GTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFG 185 (1283)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~ 185 (1283)
+..++.+++.+++.+.+.+...++|.++++++++.|+.||++. ++|++++|+++|++.+++.+...+..++..++.+++
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~ 1015 (1490)
T TIGR01271 937 SVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTM-KAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLG 1015 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777788888999999999999999999999999986 999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHH
Q 000789 186 GFVVALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQ 265 (1283)
Q Consensus 186 ~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 265 (1283)
.++++++++|.++++++.++.+++++..++.+..++..+......+.+.+.+.|+++|+.+||+|++++.+.+++.+..+
T Consensus 1016 ~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~ 1095 (1490)
T TIGR01271 1016 AIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALN 1095 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999998766544444444444555555556666666777788999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 266 VAYRAAVQQGMVSGIGLGVLMLTVIGTY--GLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQA 343 (1283)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 343 (1283)
...+..........+......++..+.. +++++++.. ..+.|.+..++.+.+....++..+...+..+..+..
T Consensus 1096 ~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~ 1170 (1490)
T TIGR01271 1096 LHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMR 1170 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554443333333333222222221111 112222322 234444444455555666677777777888899999
Q ss_pred HHHHHHHHHccCCCCCCCCCC--------------C--CcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEE
Q 000789 344 AAYKMFETIKRKPKIDPYDTS--------------G--ITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAA 407 (1283)
Q Consensus 344 a~~ri~~~l~~~~~~~~~~~~--------------~--~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ 407 (1283)
|.+|+.++++.+++.+..... . ++..+..|.|+|+||+|+|++. .+++|+|+||+|+|||++|
T Consensus 1171 s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~Gekva 1249 (1490)
T TIGR01271 1171 SVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVG 1249 (1490)
T ss_pred HHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEE
Confidence 999999999766553211000 0 0112345789999999999753 3579999999999999999
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHH
Q 000789 408 LVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAI 487 (1283)
Q Consensus 408 ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~ 487 (1283)
|||+||||||||+++|+|+++ ++|+|+|||+|+++++.+.+|++|+||||||+||+||||+||.... ..+++++++|+
T Consensus 1250 IvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~aL 1327 (1490)
T TIGR01271 1250 LLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWKVA 1327 (1490)
T ss_pred EECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHHHH
Confidence 999999999999999999997 7999999999999999999999999999999999999999998654 57899999999
Q ss_pred HHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEE
Q 000789 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVV 567 (1283)
Q Consensus 488 ~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~ 567 (1283)
+.+++++++.++|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+
T Consensus 1328 ~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~ 1407 (1490)
T TIGR01271 1328 EEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVIL 1407 (1490)
T ss_pred HHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCChhHHHHHHhhc
Q 000789 568 VAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEG 615 (1283)
Q Consensus 568 itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 615 (1283)
||||++++.+||+|+||++|+|+|.|+|++|+++ ++.|+++++.+..
T Consensus 1408 IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1408 SEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADR 1454 (1490)
T ss_pred EecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhCh
Confidence 9999999999999999999999999999999975 8899999875543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-70 Score=678.43 Aligned_cols=534 Identities=15% Similarity=0.134 Sum_probs=430.9
Q ss_pred HHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 703 SMRRLAYLNK-PEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYF 781 (1283)
Q Consensus 703 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~ 781 (1283)
.+++++.+.+ +.++.+.++++++.+.++......+++...+.... .... .....++++.++..++.++..++
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 76 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEEN-----FLGQ--GSLFSFGGLCLLALLFRIGADIF 76 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----cccc--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667 77777777777776666655555555444432110 0000 01122444555666788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000789 782 FGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWI 861 (1283)
Q Consensus 782 ~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 861 (1283)
....+.++..++|.++|+++++.|+.||++ +++|++++|+++|++.++.++.. +..++..++.+++.++++++.+|.
T Consensus 77 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 153 (555)
T TIGR01194 77 PAYAGMHIIANLRIALCEKILGAPIEEIDR--RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVP 153 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHh--cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999995 78999999999999999998864 677778888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHH--HHHHHHHHHHhcHHHhHHHH
Q 000789 862 LAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEE--KVMDLYEKKCEGPLKNGVRR 939 (1283)
Q Consensus 862 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~--~~~~~~~~~~~~~~~~~~~~ 939 (1283)
+++++++.+|+.++...+..+..++...+.++..++..+.+.|.+.|++++|+|+.++ ...++|.+..++..+...+.
T Consensus 154 L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
T TIGR01194 154 MFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIE 233 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999988888877777666666666667777788888999999999999999999954 55677888777777666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000789 940 GILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDS 1019 (1283)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~ 1019 (1283)
.........+...+..+...+.++++.+. |.+++|.++++..+......|+..+......+..+..+.+|+.++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~ 310 (555)
T TIGR01194 234 ILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGER 310 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44443333333333333334444444433 789999999999999999999999999999999999999999999753
Q ss_pred CCC--CCC--CCCcCC---ccCCCcccEEEEEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Q 000789 1020 KPK--IDS--SKDEGM---TLSSVGGAIELRCVSFKYPTRP--DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1020 ~~~--~~~--~~~~~~---~~~~~~g~I~~~nVsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
+.+ ... ...... +++...+.|+|+||+|+|++.+ ..++|+|+||+|++||++|||||||||||||+++|+|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g 390 (555)
T TIGR01194 311 FNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG 390 (555)
T ss_pred hccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 211 110 000000 1112246799999999998532 2369999999999999999999999999999999999
Q ss_pred cCCCCcceEEECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcc
Q 000789 1091 FYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYE 1170 (1283)
Q Consensus 1091 l~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gld 1170 (1283)
+|+|++|+|.+||+|+++++.+++|+++++|+|||++|++|+++|+ .+++++++++++++.++++++++.+|+|||
T Consensus 391 ~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~----~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 466 (555)
T TIGR01194 391 LYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE----GEHASLDNAQQYLQRLEIADKVKIEDGGFS 466 (555)
T ss_pred CCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc----ccchhHHHHHHHHHHcCCchhhcccccccC
Confidence 9999999999999999999999999999999999999999999995 235789999999999999999999999999
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHH-H-cCCceEEEEecCchHHhhcCEEE
Q 000789 1171 TNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER-V-MVNRTTVVVAHRLTTIKNADIIA 1248 (1283)
Q Consensus 1171 t~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~-~-~~~~TvI~IaHrl~ti~~~D~I~ 1248 (1283)
|. .+|||||||||+||||++++|+|||||||||+||+++|+.|++.+.+ . .+++|+|+||||+++++.||+|+
T Consensus 467 t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~ 541 (555)
T TIGR01194 467 TT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQII 541 (555)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE
Confidence 95 68999999999999999999999999999999999999999987643 3 46899999999999999999999
Q ss_pred EEeCCEEEEe
Q 000789 1249 VVKNGVIAEQ 1258 (1283)
Q Consensus 1249 vl~~G~Ive~ 1258 (1283)
||++|+++|.
T Consensus 542 ~l~~G~i~~~ 551 (555)
T TIGR01194 542 KLAAGCIVKD 551 (555)
T ss_pred EEECCEEEEe
Confidence 9999999874
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-72 Score=691.55 Aligned_cols=455 Identities=23% Similarity=0.383 Sum_probs=353.5
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHH-Hhcc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW-IREK 452 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 452 (1283)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 36999999999999999999999999999999999999999999999999987655443 4578
Q ss_pred cEEEccCCCCCcc-cHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000789 453 IGLVSQEPILFAT-SLRENIAYGKEN------ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIA 525 (1283)
Q Consensus 453 i~~v~Q~~~l~~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiA 525 (1283)
++||+|++.++.. |++||+.++... .+..+..+ .+.+.++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 9999999988865 999999986421 11221111 233455555 666656677789999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCC
Q 000789 526 RAILKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPE 603 (1283)
Q Consensus 526 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~ 603 (1283)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-- 231 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTED-- 231 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHH--
Confidence 99999999999999999999999999999999874 36899999999999875 999999999999887653322100
Q ss_pred ChhHHHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCccccccCCCCCCCcccccc
Q 000789 604 GPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEE 683 (1283)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1283)
.+. +
T Consensus 232 ----~~~----------~-------------------------------------------------------------- 235 (501)
T PRK10762 232 ----SLI----------E-------------------------------------------------------------- 235 (501)
T ss_pred ----HHH----------H--------------------------------------------------------------
Confidence 000 0
Q ss_pred CCCCCCCCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHH
Q 000789 684 GDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALI 763 (1283)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (1283)
.+
T Consensus 236 -------------------------------------------------------------~~----------------- 237 (501)
T PRK10762 236 -------------------------------------------------------------MM----------------- 237 (501)
T ss_pred -------------------------------------------------------------Hh-----------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000789 764 YLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQ 843 (1283)
Q Consensus 764 ~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~ 843 (1283)
+.. .
T Consensus 238 ---------------------------------------------~~~-~------------------------------ 241 (501)
T PRK10762 238 ---------------------------------------------VGR-K------------------------------ 241 (501)
T ss_pred ---------------------------------------------cCC-C------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHH
Q 000789 844 NIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMD 923 (1283)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~ 923 (1283)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 924 LYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDT 1003 (1283)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1283)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHH
Q 000789 1004 TKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKST 1083 (1283)
Q Consensus 1004 ~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKST 1083 (1283)
.. ...+.... +.....|+++||++ ++|+|+||+|++||++||+|+|||||||
T Consensus 242 ---------~~---~~~~~~~~--------~~~~~~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKST 293 (501)
T PRK10762 242 ---------LE---DQYPRLDK--------APGEVRLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTE 293 (501)
T ss_pred ---------cc---cccccccc--------CCCCcEEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHH
Confidence 00 00000000 00011488999974 2699999999999999999999999999
Q ss_pred HHHHHhccCCCCcceEEECCccCCCCCh-HHHhcceEEEccCC---CCC-hhhHHHHHhcCCCC---C----CCHHHHHH
Q 000789 1084 VIALIERFYDPDSGHVLLDNIELPKFKL-SWLRQQMGLVSQEP---VLF-NETIRTNIAYGKQG---G----ATEEEIIA 1151 (1283)
Q Consensus 1084 L~~lL~rl~~~~~G~I~idG~di~~~~~-~~lR~~i~~V~Qdp---~Lf-~gTIreNl~~g~~~---~----~sd~ei~~ 1151 (1283)
|+++|.|+++|++|+|.+||.++...+. +.+|++++||||+| .+| ..|++||+.++... . .+.++..
T Consensus 294 Ll~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~- 372 (501)
T PRK10762 294 LMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQ- 372 (501)
T ss_pred HHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHH-
Confidence 9999999999999999999999876654 34678899999997 344 57999999764210 0 1111111
Q ss_pred HHHHhChHHHHHhCCCCcc-cccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCc
Q 000789 1152 ATEASNAHNFISALPHGYE-TNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNR 1229 (1283)
Q Consensus 1152 al~~a~l~~~I~~lp~Gld-t~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~ 1229 (1283)
..+.+++..+ |+. .........||||||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++
T Consensus 373 ----~~~~~~l~~~--~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~ 446 (501)
T PRK10762 373 ----QAVSDFIRLF--NIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGL 446 (501)
T ss_pred ----HHHHHHHHhc--CCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCC
Confidence 1122334333 332 22344456899999999999999999999999999999999999999999999875 478
Q ss_pred eEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHH
Q 000789 1230 TTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1230 TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 447 tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 447 SIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred EEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 99999999999876 9999999999999999887753
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-72 Score=694.42 Aligned_cols=458 Identities=24% Similarity=0.429 Sum_probs=350.3
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCC--CCCCceEEEC---------------
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFY--DPDAGEVLID--------------- 437 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~--~~~~G~i~~~--------------- 437 (1283)
|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999963 36999999999999999999999999999999999996 7999999997
Q ss_pred --------CcccC-------CCC---HHHHhcccEEEccC-CCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHH
Q 000789 438 --------GIDIK-------KLQ---LKWIREKIGLVSQE-PILFA-TSLRENIAYGKE--NATDQEIRTAIELANAAKF 495 (1283)
Q Consensus 438 --------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~ 495 (1283)
|.++. ..+ ...+|+.++||+|+ +.+|+ .|++||+.++.. ....++.. ..+.+.
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~ 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAV-----GRAVDL 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHH
Confidence 33321 111 12457789999998 56776 499999987532 11222211 122344
Q ss_pred HHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCch
Q 000789 496 IDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLT 573 (1283)
Q Consensus 496 i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~ 573 (1283)
++.+ |++........+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 5555 666556667789999999999999999999999999999999999999999999998743 689999999999
Q ss_pred hhhc-cCEEEEEeCCEEeEecChhHHhcCCCChhHHHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCcccc
Q 000789 574 TIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMR 652 (1283)
Q Consensus 574 ~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (1283)
.+.. ||+|++|++|++++.|+++++... |.
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~~----~~--------------------------------------------- 261 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTPDEVVAV----FM--------------------------------------------- 261 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCHHHHHHH----HH---------------------------------------------
Confidence 9875 999999999999876654332100 00
Q ss_pred ccccccCCCCCCccccccCCCCCCCccccccCCCCCCCCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHH
Q 000789 653 RSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIF 732 (1283)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1283)
T Consensus 262 -------------------------------------------------------------------------------- 261 (520)
T TIGR03269 262 -------------------------------------------------------------------------------- 261 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccC
Q 000789 733 PIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDP 812 (1283)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~ 812 (1283)
.
T Consensus 262 -----------------------------------------------------------------------------~-- 262 (520)
T TIGR03269 262 -----------------------------------------------------------------------------E-- 262 (520)
T ss_pred -----------------------------------------------------------------------------h--
Confidence 0
Q ss_pred CCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000789 813 ANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAK 892 (1283)
Q Consensus 813 ~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~ 892 (1283)
. + .
T Consensus 263 -~---------------------------------------------~------------------------~------- 265 (520)
T TIGR03269 263 -G---------------------------------------------V------------------------S------- 265 (520)
T ss_pred -h---------------------------------------------c------------------------h-------
Confidence 0 0 0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000789 893 LMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHG 972 (1283)
Q Consensus 893 ~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g 972 (1283)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCC-
Q 000789 973 KATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPT- 1051 (1283)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~- 1051 (1283)
++ ...+.. +. ....|+++||+++|+.
T Consensus 266 ---------------------------------------~~----~~~~~~----~~------~~~~l~~~~l~~~~~~~ 292 (520)
T TIGR03269 266 ---------------------------------------EV----EKECEV----EV------GEPIIKVRNVSKRYISV 292 (520)
T ss_pred ---------------------------------------hh----cccccc----CC------CCceEEEeccEEEeccC
Confidence 00 000000 00 0114999999999963
Q ss_pred -CCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEEC-Ccc---CCCCC---hHHHhcceEEEcc
Q 000789 1052 -RPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLD-NIE---LPKFK---LSWLRQQMGLVSQ 1123 (1283)
Q Consensus 1052 -~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~id-G~d---i~~~~---~~~lR~~i~~V~Q 1123 (1283)
+...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |.+ +...+ ...+|++++||||
T Consensus 293 ~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q 372 (520)
T TIGR03269 293 DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQ 372 (520)
T ss_pred CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEcc
Confidence 112469999999999999999999999999999999999999999999996 643 33332 2346778999999
Q ss_pred CCCCCh-hhHHHHHhcCCCCCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCC
Q 000789 1124 EPVLFN-ETIRTNIAYGKQGGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNP 1198 (1283)
Q Consensus 1124 dp~Lf~-gTIreNl~~g~~~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p 1198 (1283)
++.+|. .|++||+.++.....+ ++++.++++..++.+. ..+.........||||||||++|||||+.+|
T Consensus 373 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq~qrv~laral~~~p 446 (520)
T TIGR03269 373 EYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGERHRVALAQVLIKEP 446 (520)
T ss_pred CcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 998876 5999999753110111 1234445555544210 0000122334579999999999999999999
Q ss_pred CEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHh
Q 000789 1199 KILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1199 ~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1266 (1283)
+||||||||++||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 447 ~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 447 RIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999988753 7899999999999876 99999999999999999998865
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-70 Score=617.09 Aligned_cols=524 Identities=23% Similarity=0.297 Sum_probs=460.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 000789 730 VIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWF 809 (1283)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff 809 (1283)
+++...++++-++.+-.... ....+......+.+++.++..++-+++...+.+.+.++..+++..+|...++++..-
T Consensus 37 iL~L~~~lyMLQVyDRVL~S--~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~- 113 (580)
T COG4618 37 LLALTGPLYMLQVYDRVLPS--RSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLR- 113 (580)
T ss_pred HHHHhhhHHHHHHHhhhccC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhh-
Confidence 33334444444555443321 112222333344445566777888899999999999999999999999998666543
Q ss_pred ccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000789 810 DDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSA 889 (1283)
Q Consensus 810 ~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~ 889 (1283)
+..|+-. ..-+|.++++.+++..-...+.+...+-+.+.++|.++++++++.++...+++...++..+..++..+
T Consensus 114 ----~~~g~~~-Q~LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~ 188 (580)
T COG4618 114 ----RGSGDGL-QPLRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLK 188 (580)
T ss_pred ----cCCCccc-cchhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 2233222 23479999999999887788888888888999999999999999999999999988988888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 890 DAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLV 969 (1283)
Q Consensus 890 ~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 969 (1283)
+..+...+.+.+...+.++.++|+++|+.....++|.+....+.....+..-..+.+.+++..+-++.+..++.+|.+++
T Consensus 189 eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lv 268 (580)
T COG4618 189 EASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLV 268 (580)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeE
Confidence 88888888899999999999999999999999999999999999888888888888889999999999999999999999
Q ss_pred hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEEC
Q 000789 970 EHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKY 1049 (1283)
Q Consensus 970 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y 1049 (1283)
..|++|.|.+++..........|+...+..|.++..+..+..|+.+++...|...+ ..+.|..+|.+.++++++.=
T Consensus 269 i~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve~l~~~P 344 (580)
T COG4618 269 IKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVERLTAAP 344 (580)
T ss_pred EcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEeeeeecC
Confidence 99999999999999999999999999999999999999999999999987765432 34556678999999999977
Q ss_pred CCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCCCCCh
Q 000789 1050 PTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFN 1129 (1283)
Q Consensus 1050 ~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~ 1129 (1283)
|+. .+|+|+|+||+++|||-+||+||||||||||.++|.|.+.|.+|.|.+||-|+++.+.+++-++|||.|||..||+
T Consensus 345 Pg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~ 423 (580)
T COG4618 345 PGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD 423 (580)
T ss_pred CCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecC
Confidence 654 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCC
Q 000789 1130 ETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSA 1209 (1283)
Q Consensus 1130 gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSa 1209 (1283)
|||+|||+-. .++.+++.|.+|++.++.||.|.+||+||||.|||+|..|||||||||+|||||+.+|.+++||||-|+
T Consensus 424 GTIaeNIaRf-~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsN 502 (580)
T COG4618 424 GTIAENIARF-GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSN 502 (580)
T ss_pred CcHHHHHHhc-cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 9999999743 246899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhc
Q 000789 1210 LDAESERVVQDALERVM-VNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1210 LD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
||.+-|+.+.++|.+.. +|+|+|+||||++.+..+|+|+||++|++..+|+-+|.+++
T Consensus 503 LD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 503 LDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999998865 68999999999999999999999999999999999999875
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-69 Score=712.80 Aligned_cols=221 Identities=25% Similarity=0.436 Sum_probs=191.5
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcc
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREK 452 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 452 (1283)
..|+++||++.|++. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|+.
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 469999999999632 3469999999999999999999999999999999999999999999999999864 45667889
Q ss_pred cEEEccCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 000789 453 IGLVSQEPILFAT-SLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAIL 529 (1283)
Q Consensus 453 i~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~ 529 (1283)
+|||||++.+|+. ||+|||.++.. ..+.++..+ .+++.++.+ |++........+||||||||++|||||+
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999999975 99999987521 122222211 233455555 7777777888999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCC
Q 000789 530 KNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDP 602 (1283)
Q Consensus 530 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 602 (1283)
.+|+|||||||||+||+.+++.+.+.|+++.+++|+|++||+++.+.. ||||++|++|++++.|++++|.++.
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 999999999999999999999999999998778999999999999976 9999999999999999999997653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-72 Score=686.53 Aligned_cols=457 Identities=23% Similarity=0.360 Sum_probs=350.9
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCH-HHHhcc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL-KWIREK 452 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 452 (1283)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 359999999999999999999999999999999999999999999999999875543 456788
Q ss_pred cEEEccCCCCCcc-cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000789 453 IGLVSQEPILFAT-SLRENIAYGKEN-----ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526 (1283)
Q Consensus 453 i~~v~Q~~~l~~~-ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiAR 526 (1283)
|+||+|++.+|.. |++||+.++... ....+.. ..+.++++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999988875 999999986421 1122211 1234556666 6655556677899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCCC
Q 000789 527 AILKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEG 604 (1283)
Q Consensus 527 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~ 604 (1283)
||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.++..+...
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~---- 229 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVD---- 229 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCC----
Confidence 9999999999999999999999999999999875 46899999999999876 99999999999985432100000
Q ss_pred hhHHHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCccccccCCCCCCCccccccC
Q 000789 605 PYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEG 684 (1283)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1283)
. + .
T Consensus 230 --------------~-~--------------------------------------------------------------~ 232 (501)
T PRK11288 230 --------------R-D--------------------------------------------------------------Q 232 (501)
T ss_pred --------------H-H--------------------------------------------------------------H
Confidence 0 0 0
Q ss_pred CCCCCCCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHH
Q 000789 685 DQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIY 764 (1283)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (1283)
+
T Consensus 233 ----------------------~--------------------------------------------------------- 233 (501)
T PRK11288 233 ----------------------L--------------------------------------------------------- 233 (501)
T ss_pred ----------------------H---------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000789 765 LVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQN 844 (1283)
Q Consensus 765 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~ 844 (1283)
.+.+ ...+..
T Consensus 234 ---------------------------------~~~~-------~~~~~~------------------------------ 243 (501)
T PRK11288 234 ---------------------------------VQAM-------VGREIG------------------------------ 243 (501)
T ss_pred ---------------------------------HHHh-------cCCCcc------------------------------
Confidence 0000 000000
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHH
Q 000789 845 IATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDL 924 (1283)
Q Consensus 845 ~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~ 924 (1283)
T Consensus 244 -------------------------------------------------------------------------------- 243 (501)
T PRK11288 244 -------------------------------------------------------------------------------- 243 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 925 YEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTT 1004 (1283)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1283)
T Consensus 244 -------------------------------------------------------------------------------- 243 (501)
T PRK11288 244 -------------------------------------------------------------------------------- 243 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHH
Q 000789 1005 KAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTV 1084 (1283)
Q Consensus 1005 ~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL 1084 (1283)
+. ....+. .. ....++++|++++ .+++|+||+|++||++||+||||||||||
T Consensus 244 -------~~---~~~~~~-----~~------~~~~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTL 295 (501)
T PRK11288 244 -------DI---YGYRPR-----PL------GEVRLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSEL 295 (501)
T ss_pred -------cc---cccccc-----CC------CCcEEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHH
Confidence 00 000000 00 0114889999742 38999999999999999999999999999
Q ss_pred HHHHhccCCCCcceEEECCccCCCCC-hHHHhcceEEEccCCC---CC-hhhHHHHHhcCCCCC-------CCHHHHHHH
Q 000789 1085 IALIERFYDPDSGHVLLDNIELPKFK-LSWLRQQMGLVSQEPV---LF-NETIRTNIAYGKQGG-------ATEEEIIAA 1152 (1283)
Q Consensus 1085 ~~lL~rl~~~~~G~I~idG~di~~~~-~~~lR~~i~~V~Qdp~---Lf-~gTIreNl~~g~~~~-------~sd~ei~~a 1152 (1283)
+++|+|+++|++|+|.+||.++...+ ...+|+.++|+||+|. +| ..|+.||+.++.... ....+-.
T Consensus 296 lk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-- 373 (501)
T PRK11288 296 MKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEA-- 373 (501)
T ss_pred HHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHH--
Confidence 99999999999999999999886543 3456789999999973 44 579999997642111 0111110
Q ss_pred HHHhChHHHHHhCCCCcc-cccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCce
Q 000789 1153 TEASNAHNFISALPHGYE-TNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRT 1230 (1283)
Q Consensus 1153 l~~a~l~~~I~~lp~Gld-t~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~T 1230 (1283)
..+.+++..+ |++ ........+||||||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. .++|
T Consensus 374 ---~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~t 448 (501)
T PRK11288 374 ---ENADRFIRSL--NIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVA 448 (501)
T ss_pred ---HHHHHHHHhc--CcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCE
Confidence 1122333333 221 12233345899999999999999999999999999999999999999999998875 4789
Q ss_pred EEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHH
Q 000789 1231 TVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1231 vI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
+|+|||+++.+.. ||++++|++|++++.|+++|..
T Consensus 449 viivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 449 VLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred EEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 9999999999976 9999999999999999988754
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-71 Score=685.61 Aligned_cols=457 Identities=22% Similarity=0.345 Sum_probs=349.6
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCceEEECCcccCCCCHHH-Hhc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP--DAGEVLIDGIDIKKLQLKW-IRE 451 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~-~r~ 451 (1283)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 3699999999999999999999999999999999999987 7999999999998776544 467
Q ss_pred ccEEEccCCCCCcc-cHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccccc-cCCCCCCChHHHHHHH
Q 000789 452 KIGLVSQEPILFAT-SLRENIAYGKEN------ATDQEIRTAIELANAAKFIDKLPKGLDTMA-GEHGTQLSGGQKQRIA 523 (1283)
Q Consensus 452 ~i~~v~Q~~~l~~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~-~~~g~~LSgGqkqria 523 (1283)
.|+||+|++.++.. |++||+.++... ...++.. ..+.+.++.+ |++... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 89999999988875 999999986421 1112211 1234455555 554433 3446789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 524 IARAILKNPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 524 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED 231 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHH
Confidence 99999999999999999999999999999999998754 6899999999999876 999999999999865432110000
Q ss_pred CCChhHHHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCccccccCCCCCCCcccc
Q 000789 602 PEGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFET 681 (1283)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1283)
T Consensus 232 -------------------------------------------------------------------------------- 231 (500)
T TIGR02633 232 -------------------------------------------------------------------------------- 231 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHH
Q 000789 682 EEGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWA 761 (1283)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (1283)
. . . .
T Consensus 232 --~----------------------~-----------------------------------~-------~---------- 235 (500)
T TIGR02633 232 --D----------------------I-----------------------------------I-------T---------- 235 (500)
T ss_pred --H----------------------H-----------------------------------H-------H----------
Confidence 0 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHH
Q 000789 762 LIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALV 841 (1283)
Q Consensus 762 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~ 841 (1283)
.+ +.. .
T Consensus 236 --------------------------------------~~-------~~~-~---------------------------- 241 (500)
T TIGR02633 236 --------------------------------------MM-------VGR-E---------------------------- 241 (500)
T ss_pred --------------------------------------HH-------hCc-c----------------------------
Confidence 00 000 0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHH
Q 000789 842 VQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKV 921 (1283)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~ 921 (1283)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T TIGR02633 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 922 MDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAP 1001 (1283)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1283)
.
T Consensus 242 ----------------------------------------------------~--------------------------- 242 (500)
T TIGR02633 242 ----------------------------------------------------I--------------------------- 242 (500)
T ss_pred ----------------------------------------------------c---------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCH
Q 000789 1002 DTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGK 1081 (1283)
Q Consensus 1002 ~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGK 1081 (1283)
.. ..+.... +. .+.-|+++|++++|+...+..+|+|+||+|++||++||+|+|||||
T Consensus 243 ------------~~---~~~~~~~--~~------~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGK 299 (500)
T TIGR02633 243 ------------TS---LYPHEPH--EI------GDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGR 299 (500)
T ss_pred ------------cc---ccccccc--CC------CCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCH
Confidence 00 0000000 00 0114999999999953212359999999999999999999999999
Q ss_pred HHHHHHHhccCCC-CcceEEECCccCCCCC-hHHHhcceEEEccCC---CCCh-hhHHHHHhcCCCC------CCCH---
Q 000789 1082 STVIALIERFYDP-DSGHVLLDNIELPKFK-LSWLRQQMGLVSQEP---VLFN-ETIRTNIAYGKQG------GATE--- 1146 (1283)
Q Consensus 1082 STL~~lL~rl~~~-~~G~I~idG~di~~~~-~~~lR~~i~~V~Qdp---~Lf~-gTIreNl~~g~~~------~~sd--- 1146 (1283)
|||+++|+|+++| ++|+|.++|.++...+ ...+|++++||||++ .+|. .|+++|+.++... ....
T Consensus 300 STLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~ 379 (500)
T TIGR02633 300 TELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE 379 (500)
T ss_pred HHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHH
Confidence 9999999999995 8999999999986543 356788999999996 3554 6999999874211 0111
Q ss_pred -HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHH
Q 000789 1147 -EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV 1225 (1283)
Q Consensus 1147 -~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~ 1225 (1283)
+++.++++..++ +. .........||||||||++||||++.+|++|||||||++||+.+.+.+++.|+++
T Consensus 380 ~~~~~~~l~~~~l-------~~---~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 449 (500)
T TIGR02633 380 LQIIGSAIQRLKV-------KT---ASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL 449 (500)
T ss_pred HHHHHHHHHhcCc-------cC---CCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHH
Confidence 123333333332 11 1122334579999999999999999999999999999999999999999999886
Q ss_pred c-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHH
Q 000789 1226 M-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDA 1263 (1283)
Q Consensus 1226 ~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~e 1263 (1283)
. ++.|+|+|||+++.+.. ||++++|++|+++..++.++
T Consensus 450 ~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 450 AQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 4 47899999999999976 99999999999998776544
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-71 Score=681.41 Aligned_cols=466 Identities=22% Similarity=0.377 Sum_probs=356.9
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHh-cc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIR-EK 452 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r-~~ 452 (1283)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999963 3599999999999999999999999999999999999999999999999999877765554 57
Q ss_pred cEEEccCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 453 IGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 453 i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
+|||+|++.++.. |++||+.++.... .+.. ..+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKR--QASM-----QKMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccc--hHHH-----HHHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999988875 9999999875321 1111 1123445555 666556677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCCChhHHH
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQL 609 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 609 (1283)
|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++... +.
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~------~~ 232 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD------DI 232 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH------HH
Confidence 99999999999999999999999999875 46899999999999865 999999999999999887765321 00
Q ss_pred HHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCccccccCCCCCCCccccccCCCCCC
Q 000789 610 VRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQGGA 689 (1283)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1283)
.+.... . . . . . . .
T Consensus 233 ~~~~~~---------------~------------~---------------~---~---------~---------~--~-- 245 (510)
T PRK15439 233 IQAITP---------------A------------A---------------R---E---------K---------S--L-- 245 (510)
T ss_pred HHHHhC---------------c------------c---------------c---c---------c---------c--c--
Confidence 000000 0 0 0 0 0 0 0
Q ss_pred CCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHH
Q 000789 690 ERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGI 769 (1283)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 769 (1283)
T Consensus 246 -------------------------------------------------------------------------------- 245 (510)
T PRK15439 246 -------------------------------------------------------------------------------- 245 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 770 INLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIA 849 (1283)
Q Consensus 770 ~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~ 849 (1283)
. ..
T Consensus 246 ----------------------------------------~--~~----------------------------------- 248 (510)
T PRK15439 246 ----------------------------------------S--AS----------------------------------- 248 (510)
T ss_pred ----------------------------------------c--cc-----------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHH
Q 000789 850 AGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKC 929 (1283)
Q Consensus 850 ~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~ 929 (1283)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK15439 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 930 EGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDS 1009 (1283)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 1009 (1283)
.
T Consensus 249 ----~--------------------------------------------------------------------------- 249 (510)
T PRK15439 249 ----Q--------------------------------------------------------------------------- 249 (510)
T ss_pred ----c---------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHh
Q 000789 1010 AASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIE 1089 (1283)
Q Consensus 1010 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1089 (1283)
+. . ...++. ....+ ..+..|+++|++. .+|+|+||+|++||++||+|+||||||||+++|.
T Consensus 250 --~~-~-~~~~~~-~~~~~------~~~~~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~ 310 (510)
T PRK15439 250 --KL-W-LELPGN-RRQQA------AGAPVLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLY 310 (510)
T ss_pred --cc-c-cccccc-ccccC------CCCceEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 00 0 000000 00000 0011489999983 1599999999999999999999999999999999
Q ss_pred ccCCCCcceEEECCccCCCCChHH-HhcceEEEccCC---CCCh-hhHHHHHhcCC---CCC-CCHHHHHHHHHHhChHH
Q 000789 1090 RFYDPDSGHVLLDNIELPKFKLSW-LRQQMGLVSQEP---VLFN-ETIRTNIAYGK---QGG-ATEEEIIAATEASNAHN 1160 (1283)
Q Consensus 1090 rl~~~~~G~I~idG~di~~~~~~~-lR~~i~~V~Qdp---~Lf~-gTIreNl~~g~---~~~-~sd~ei~~al~~a~l~~ 1160 (1283)
|+.+|++|+|.++|.++...+... +|++|+||||++ .+|. .|+.+|+.... ... ....+.. ..+.+
T Consensus 311 Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~ 385 (510)
T PRK15439 311 GLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLER 385 (510)
T ss_pred CCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHH
Confidence 999999999999999998766544 467899999996 3564 59999985320 000 0111111 11223
Q ss_pred HHHhCCCCcc-cccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCc
Q 000789 1161 FISALPHGYE-TNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRL 1238 (1283)
Q Consensus 1161 ~I~~lp~Gld-t~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl 1238 (1283)
++..+ |++ .........||||||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++
T Consensus 386 ~l~~~--~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~ 463 (510)
T PRK15439 386 YRRAL--NIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL 463 (510)
T ss_pred HHHHc--CCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 34443 332 22344445799999999999999999999999999999999999999999999874 478999999999
Q ss_pred hHHhh-cCEEEEEeCCEEEEecChHHHHh
Q 000789 1239 TTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1239 ~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1266 (1283)
+.+.. ||+|++|++|+++..|+++++..
T Consensus 464 ~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 464 EEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 99976 99999999999999999987764
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-69 Score=605.43 Aligned_cols=530 Identities=22% Similarity=0.279 Sum_probs=455.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 58 ISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTI 137 (1283)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l 137 (1283)
+++.+..++....|+++-++.|.+..... ...+....++.+++.++.+++.+++.....+++.++..++...+|...
T Consensus 30 lfS~~INiL~L~~~lyMLQVyDRVL~S~s---~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~ 106 (580)
T COG4618 30 LFSAVINLLALTGPLYMLQVYDRVLPSRS---VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAAS 106 (580)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhccCCC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 34444455566677788888998754321 112223334445556667788889999999999999999999999999
Q ss_pred HhCChhhHhccCCccHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000789 138 LRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGE-KVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMA 216 (1283)
Q Consensus 138 l~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~ 216 (1283)
.+.+..-. ..|+=.+-+ +|.+.++.|++. .+..++...|+.+. +.++|.+++++.++.++...+++.+..+-.
T Consensus 107 ~~~~l~~~----~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~y-l~v~fl~Hp~lG~~a~~ga~iLv~la~ln~ 180 (580)
T COG4618 107 FSAPLLRR----GSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLY-LAVIFLFHPWLGLIALAGAIILVVLALLNE 180 (580)
T ss_pred HhhHHhhc----CCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766433 334333322 599999999866 55666677777664 556778888899988888777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 217 LIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLA 296 (1283)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1283)
+..++-.++..+...+.+...+-+.++.++|++.|+.....++|.+.+..+.....+..-..+.+..++-.+-......+
T Consensus 181 ~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~i 260 (580)
T COG4618 181 RATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAV 260 (580)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888899999999999999999999999999999999999999888888888888877777777778888
Q ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcccCccccEE
Q 000789 297 VWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIE 376 (1283)
Q Consensus 297 ~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 376 (1283)
+..|++++++|++|+|.+++-...+.....|+-.....+..+..++.|.+|+.++|.+.|...+. .+.+..++.+.
T Consensus 261 Lg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~----m~LP~P~g~L~ 336 (580)
T COG4618 261 LGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER----MPLPAPQGALS 336 (580)
T ss_pred HhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC----CCCCCCCceee
Confidence 88999999999999999998777677777899999999999999999999999999887664332 34456688999
Q ss_pred EEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccEEE
Q 000789 377 LRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLV 456 (1283)
Q Consensus 377 ~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 456 (1283)
++++++.=|+. ++++|+|+||++++||.+|||||||||||||.++|.|.++|.+|.|.+||-|+++++.+.+-++|||.
T Consensus 337 Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYL 415 (580)
T COG4618 337 VERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYL 415 (580)
T ss_pred EeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcC
Confidence 99999976654 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 000789 457 SQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILL 536 (1283)
Q Consensus 457 ~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~ill 536 (1283)
|||..||+|||.|||+-..++.+++.+.+|++.++.||.|.++|+||||.+|+.|..|||||||||+||||||.||.+++
T Consensus 416 PQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvV 495 (580)
T COG4618 416 PQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVV 495 (580)
T ss_pred cccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEE
Confidence 99999999999999997777889999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcC
Q 000789 537 LDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 537 lDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
||||-|+||.+.|+.+.++|.+.+ ++.|+|+||||++.+..+|+|++|++|++...|+-+|.+++
T Consensus 496 LDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 496 LDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred ecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999999886 47899999999999999999999999999999999998865
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-70 Score=673.36 Aligned_cols=454 Identities=21% Similarity=0.348 Sum_probs=348.6
Q ss_pred EEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCH-HHHhcccEE
Q 000789 377 LRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL-KWIREKIGL 455 (1283)
Q Consensus 377 ~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~ 455 (1283)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 369999999999999999999999999999999999999999999999999876554 445778999
Q ss_pred EccCCCCCc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 000789 456 VSQEPILFA-TSLRENIAYGKEN-----ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAIL 529 (1283)
Q Consensus 456 v~Q~~~l~~-~ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~ 529 (1283)
|+|++.++. .|++||+.++... .+.++.. ..+.+.++.+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMY-----RDTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998775 4999999986421 1122211 1234556666 6766677778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCCChhH
Q 000789 530 KNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYT 607 (1283)
Q Consensus 530 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 607 (1283)
.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~------ 224 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD------ 224 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH------
Confidence 9999999999999999999999999999875 46899999999999875 999999999999987754332100
Q ss_pred HHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCccccccCCCCCCCccccccCCCC
Q 000789 608 QLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQG 687 (1283)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1283)
+...
T Consensus 225 ~~~~---------------------------------------------------------------------------- 228 (491)
T PRK10982 225 KIIA---------------------------------------------------------------------------- 228 (491)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHH
Q 000789 688 GAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVL 767 (1283)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 767 (1283)
T Consensus 229 -------------------------------------------------------------------------------- 228 (491)
T PRK10982 229 -------------------------------------------------------------------------------- 228 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000789 768 GIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIAT 847 (1283)
Q Consensus 768 ~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~ 847 (1283)
.+ +.. .
T Consensus 229 --------------------------------~~-------~~~-~---------------------------------- 234 (491)
T PRK10982 229 --------------------------------MM-------VGR-S---------------------------------- 234 (491)
T ss_pred --------------------------------HH-------hCC-C----------------------------------
Confidence 00 000 0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHH
Q 000789 848 IAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEK 927 (1283)
Q Consensus 848 ~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~ 927 (1283)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 928 KCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAK 1007 (1283)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1283)
.
T Consensus 235 ----------------------------------------------~--------------------------------- 235 (491)
T PRK10982 235 ----------------------------------------------L--------------------------------- 235 (491)
T ss_pred ----------------------------------------------c---------------------------------
Confidence 0
Q ss_pred HHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHH
Q 000789 1008 DSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIAL 1087 (1283)
Q Consensus 1008 ~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~l 1087 (1283)
.+ ..++. . . .. .+..|+++|++++|. ++|+|+||+|++||++||+|+||||||||+++
T Consensus 236 ---~~-----~~~~~-~-~-~~------~~~~i~~~~l~~~~~-----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~ 293 (491)
T PRK10982 236 ---TQ-----RFPDK-E-N-KP------GEVILEVRNLTSLRQ-----PSIRDVSFDLHKGEILGIAGLVGAKRTDIVET 293 (491)
T ss_pred ---cc-----ccccc-c-C-CC------CCcEEEEeCcccccC-----cccceeeEEEeCCcEEEEecCCCCCHHHHHHH
Confidence 00 00000 0 0 00 011489999999752 48999999999999999999999999999999
Q ss_pred HhccCCCCcceEEECCccCCCCChH-HHhcceEEEccCCC---CCh-hhHHHH-----HhcCCCC-C-CCHHHHHHHHHH
Q 000789 1088 IERFYDPDSGHVLLDNIELPKFKLS-WLRQQMGLVSQEPV---LFN-ETIRTN-----IAYGKQG-G-ATEEEIIAATEA 1155 (1283)
Q Consensus 1088 L~rl~~~~~G~I~idG~di~~~~~~-~lR~~i~~V~Qdp~---Lf~-gTIreN-----l~~g~~~-~-~sd~ei~~al~~ 1155 (1283)
|+|+.+|++|+|.+||.++...+.. .+|+.++|+||++. +|. .|+.+| +.+.... . .+.++..+
T Consensus 294 l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 369 (491)
T PRK10982 294 LFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS---- 369 (491)
T ss_pred HcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH----
Confidence 9999999999999999999776643 45778999999963 454 577666 3221010 1 12122111
Q ss_pred hChHHHHHhCCCCcc-cccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEE
Q 000789 1156 SNAHNFISALPHGYE-TNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVV 1233 (1283)
Q Consensus 1156 a~l~~~I~~lp~Gld-t~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~ 1233 (1283)
.+.+++..+ |+. -.......+||||||||++||||++++|+||||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 370 -~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~ 446 (491)
T PRK10982 370 -DTQWVIDSM--RVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIII 446 (491)
T ss_pred -HHHHHHHhc--CccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEE
Confidence 122334443 221 11344445899999999999999999999999999999999999999999998864 5789999
Q ss_pred EecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1234 VAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1234 IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
|||+++.+.. ||++++|++|+++..++.+++
T Consensus 447 vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 447 ISSEMPELLGITDRILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred ECCChHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999876 999999999999988876543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-69 Score=724.18 Aligned_cols=213 Identities=21% Similarity=0.358 Sum_probs=181.9
Q ss_pred cEEEEEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC---CCcceEEECCccCCCCChHHH
Q 000789 1039 AIELRCVSFKYPTRP-DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD---PDSGHVLLDNIELPKFKLSWL 1114 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~---~~~G~I~idG~di~~~~~~~l 1114 (1283)
.++++||+++|+.++ .+++|+|||++|+|||++||+||||||||||+++|+|+.+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 479999999996322 3579999999999999999999999999999999999998 78899999999984 257
Q ss_pred hcceEEEccCCC-CChhhHHHHHhcCC----CCCCCHHH----HHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1115 RQQMGLVSQEPV-LFNETIRTNIAYGK----QGGATEEE----IIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1115 R~~i~~V~Qdp~-Lf~gTIreNl~~g~----~~~~sd~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
|+.++||+|++. ++..||||||.++. +.+.++++ +.++++..++. +..|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHHh
Confidence 899999999875 55789999998642 11234433 44555555543 3478999998889999999
Q ss_pred HHHHHHHHHccCCC-EEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHH--hhcCEEEEEeCC-EEEEecC
Q 000789 1186 QRIAIARAVLKNPK-ILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTI--KNADIIAVVKNG-VIAEQGS 1260 (1283)
Q Consensus 1186 QRlaiARAll~~p~-ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti--~~~D~I~vl~~G-~Ive~Gt 1260 (1283)
||++|||||+++|+ ||+||||||+||+.+...|++.|+++. +++|||+++|+++.. ..||++++|++| +++++|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999874 679999999999974 569999999987 9999998
Q ss_pred hH
Q 000789 1261 HD 1262 (1283)
Q Consensus 1261 ~~ 1262 (1283)
+.
T Consensus 988 ~~ 989 (1394)
T TIGR00956 988 LG 989 (1394)
T ss_pred cc
Confidence 74
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-70 Score=670.47 Aligned_cols=454 Identities=20% Similarity=0.263 Sum_probs=345.6
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3899999999963 3599999999999999999999999999999999999999999999999888776666677789
Q ss_pred EEEccCCCC--C-------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000789 454 GLVSQEPIL--F-------ATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAI 524 (1283)
Q Consensus 454 ~~v~Q~~~l--~-------~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriai 524 (1283)
+|++|++.+ + ..|+++|+.++. ...+++.+ .++.+ |++........+||||||||++|
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQ---------LAQQF--GITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch--hHHHHHHH---------HHHHc--CCHhhhhCCcccCCHHHHHHHHH
Confidence 999998753 2 358899886541 11223333 33444 55544556678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCC
Q 000789 525 ARAILKNPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDP 602 (1283)
Q Consensus 525 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 602 (1283)
||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+++..|+++++....
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 226 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA 226 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcch
Confidence 9999999999999999999999999999999998754 6899999999999876 9999999999999988776654320
Q ss_pred CChhHHHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCccccccCCCCCCCccccc
Q 000789 603 EGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETE 682 (1283)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1283)
....+.. . .
T Consensus 227 --~~~~~~~-------~-----------~--------------------------------------------------- 235 (490)
T PRK10938 227 --LVAQLAH-------S-----------E--------------------------------------------------- 235 (490)
T ss_pred --hhhhhhh-------h-----------h---------------------------------------------------
Confidence 0000000 0 0
Q ss_pred cCCCCCCCCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHH
Q 000789 683 EGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWAL 762 (1283)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1283)
.
T Consensus 236 -~------------------------------------------------------------------------------ 236 (490)
T PRK10938 236 -Q------------------------------------------------------------------------------ 236 (490)
T ss_pred -c------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000789 763 IYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVV 842 (1283)
Q Consensus 763 ~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~ 842 (1283)
+ ... ..+.
T Consensus 237 --------------------------------------~-------~~~-~~~~-------------------------- 244 (490)
T PRK10938 237 --------------------------------------L-------EGV-QLPE-------------------------- 244 (490)
T ss_pred --------------------------------------c-------Ccc-ccCc--------------------------
Confidence 0 000 0000
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHH
Q 000789 843 QNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVM 922 (1283)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~ 922 (1283)
T Consensus 245 -------------------------------------------------------------------------------- 244 (490)
T PRK10938 245 -------------------------------------------------------------------------------- 244 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 923 DLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPD 1002 (1283)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1283)
T Consensus 245 -------------------------------------------------------------------------------- 244 (490)
T PRK10938 245 -------------------------------------------------------------------------------- 244 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHH
Q 000789 1003 TTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKS 1082 (1283)
Q Consensus 1003 ~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKS 1082 (1283)
..++....... .....|+++|++++|++ ..+|+|+||+|++||++||+||||||||
T Consensus 245 ---------------~~~~~~~~~~~------~~~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKS 300 (490)
T PRK10938 245 ---------------PDEPSARHALP------ANEPRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKS 300 (490)
T ss_pred ---------------ccccccccccC------CCCceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHH
Confidence 00000000000 00124999999999974 3599999999999999999999999999
Q ss_pred HHHHHHhccCCC-CcceEEECCccCCC-CChHHHhcceEEEccCCCCCh---hhHHHHHhcCCC------CCCC---HHH
Q 000789 1083 TVIALIERFYDP-DSGHVLLDNIELPK-FKLSWLRQQMGLVSQEPVLFN---ETIRTNIAYGKQ------GGAT---EEE 1148 (1283)
Q Consensus 1083 TL~~lL~rl~~~-~~G~I~idG~di~~-~~~~~lR~~i~~V~Qdp~Lf~---gTIreNl~~g~~------~~~s---d~e 1148 (1283)
||+++|+|+.+| ++|+|.++|.++.. .+...+|++|+|++|++.++. .|+++++.++.. .... +++
T Consensus 301 TLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (490)
T PRK10938 301 TLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKL 380 (490)
T ss_pred HHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHH
Confidence 999999998876 69999999987632 233456889999999986642 467777653211 0111 233
Q ss_pred HHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-
Q 000789 1149 IIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV- 1227 (1283)
Q Consensus 1149 i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~- 1227 (1283)
+.++++..++.+. ........||||||||++|||||+++|+||||||||++||+++.+.+.+.|+++.+
T Consensus 381 ~~~~l~~~~l~~~----------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~ 450 (490)
T PRK10938 381 AQQWLDILGIDKR----------TADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE 450 (490)
T ss_pred HHHHHHHcCCchh----------hccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc
Confidence 4555555554320 22233457999999999999999999999999999999999999999999998753
Q ss_pred C-ceEEEEecCchHHhh--cCEEEEEeCCEEEEec
Q 000789 1228 N-RTTVVVAHRLTTIKN--ADIIAVVKNGVIAEQG 1259 (1283)
Q Consensus 1228 ~-~TvI~IaHrl~ti~~--~D~I~vl~~G~Ive~G 1259 (1283)
+ .|+|+|||+++.+.. ||++++|++|+|++.-
T Consensus 451 ~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 451 GETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred CCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 3 469999999999964 8999999999998764
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-69 Score=669.37 Aligned_cols=482 Identities=23% Similarity=0.374 Sum_probs=346.7
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. .+|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999963 36999999999999999999999999999999999999999999999973 3699
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCCC----------------CHH---HHHHH----------HHHhcHHHHHHhCCCCcc
Q 000789 455 LVSQEPILFAT-SLRENIAYGKENA----------------TDQ---EIRTA----------IELANAAKFIDKLPKGLD 504 (1283)
Q Consensus 455 ~v~Q~~~l~~~-ti~~ni~~~~~~~----------------~~~---~~~~~----------~~~~~~~~~i~~lp~g~~ 504 (1283)
|++|++.+|.. |++||+.++.... ..+ .+.+. .....+.+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 99999988765 9999998753100 000 00000 0112344556666 665
Q ss_pred ccc-cCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEE
Q 000789 505 TMA-GEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIA 582 (1283)
Q Consensus 505 t~~-~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~ 582 (1283)
... .....+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+ .+.|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 433 345689999999999999999999999999999999999999999999975 47899999999999876 99999
Q ss_pred EEeCCEEe-EecChhHHhcCCCChhHHHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCC
Q 000789 583 VVHQGKIV-EKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSG 661 (1283)
Q Consensus 583 vl~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1283)
+|++|+++ +.|+++++++.....+... ..+ .+
T Consensus 224 ~l~~g~i~~~~g~~~~~~~~~~~~~~~~---------~~~-----~~--------------------------------- 256 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMTAATQARERL---------LAD-----NA--------------------------------- 256 (530)
T ss_pred EEeCCEEEEecCCHHHHHHHHHHHHHHH---------HHH-----HH---------------------------------
Confidence 99999994 7888877653200000000 000 00
Q ss_pred CCCccccccCCCCCCCccccccCCCCCCCCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 662 SRHSFGFTYGVPGPINVFETEEGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSS 741 (1283)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1283)
... ...+....
T Consensus 257 ----------------------------------~~~---~~~~~~~~-------------------------------- 267 (530)
T PRK15064 257 ----------------------------------KKK---AQIAELQS-------------------------------- 267 (530)
T ss_pred ----------------------------------HHH---HHHHHHHH--------------------------------
Confidence 000 00000000
Q ss_pred HHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHH
Q 000789 742 SIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGA 821 (1283)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~ 821 (1283)
+ ..+. . ..
T Consensus 268 ------------------~-------------------------------------~~~~--------~--~~------- 275 (530)
T PRK15064 268 ------------------F-------------------------------------VSRF--------S--AN------- 275 (530)
T ss_pred ------------------H-------------------------------------HHHh--------h--cc-------
Confidence 0 0000 0 00
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000789 822 RLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQV 901 (1283)
Q Consensus 822 rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 901 (1283)
....
T Consensus 276 ------------------------------------------------------------------~~~~---------- 279 (530)
T PRK15064 276 ------------------------------------------------------------------ASKA---------- 279 (530)
T ss_pred ------------------------------------------------------------------chhh----------
Confidence 0000
Q ss_pred HHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHH
Q 000789 902 ANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFK 981 (1283)
Q Consensus 902 ~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~ 981 (1283)
...
T Consensus 280 -------------------------------~~~---------------------------------------------- 282 (530)
T PRK15064 280 -------------------------------KQA---------------------------------------------- 282 (530)
T ss_pred -------------------------------HHH----------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCCC-CCCCCCc-CCccCCCcccEEEEEEEEECCCCCCccc
Q 000789 982 VFFALTISALGVSQTSAMAPDTTKAKDSAASIFEI--LDSKPK-IDSSKDE-GMTLSSVGGAIELRCVSFKYPTRPDVQI 1057 (1283)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~--~~~~~~-~~~~~~~-~~~~~~~~g~I~~~nVsf~Y~~~~~~~v 1057 (1283)
.....++.+. ...++. ....... .......+..|+++||+++|++ .++
T Consensus 283 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~ 334 (530)
T PRK15064 283 -------------------------TSRAKQIDKIKLEEVKPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDN---GPL 334 (530)
T ss_pred -------------------------HHHHHHHhhccccccCCccccCceeeCCCCCCCCCceEEEEeeEEeeCC---cee
Confidence 0000000000 000000 0000000 0000001236999999999974 359
Q ss_pred ccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCCC--CC-hhhHHH
Q 000789 1058 FRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPV--LF-NETIRT 1134 (1283)
Q Consensus 1058 L~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~--Lf-~gTIre 1134 (1283)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++||||++. ++ ..|+++
T Consensus 335 l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~t~~~ 403 (530)
T PRK15064 335 FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIGYYAQDHAYDFENDLTLFD 403 (530)
T ss_pred ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEEEEcccccccCCCCCcHHH
Confidence 99999999999999999999999999999999999999999999873 57999999974 44 369999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHhChH-HHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHH
Q 000789 1135 NIAYGKQGGATEEEIIAATEASNAH-NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAE 1213 (1283)
Q Consensus 1135 Nl~~g~~~~~sd~ei~~al~~a~l~-~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~ 1213 (1283)
|+.+.......++++.+.++..++. +.. + ....+||||||||++||||++++|+||||||||++||+.
T Consensus 404 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~ 472 (530)
T PRK15064 404 WMSQWRQEGDDEQAVRGTLGRLLFSQDDI-------K----KSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDME 472 (530)
T ss_pred HHHHhccCCccHHHHHHHHHHcCCChhHh-------c----CcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 9864211123355677777776652 222 2 234589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEE-EecChHHHHhc
Q 000789 1214 SERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIA-EQGSHDALMKI 1267 (1283)
Q Consensus 1214 te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Iv-e~Gt~~eLl~~ 1267 (1283)
+...+.+.|++. ++|+|+|||+++.+.. ||+|++|++|+++ +.|+++++++.
T Consensus 473 ~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 473 SIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999999986 5699999999999876 9999999999998 78999998874
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-67 Score=648.82 Aligned_cols=522 Identities=18% Similarity=0.188 Sum_probs=400.1
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 43 AFADKQDAVLMIVGTISAIGSGLAHPF-MTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVT 121 (1283)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (1283)
++.+++++ .++++++++++..++... .|++.+.++|.... .. ..+. .++++.++..++.+++.++..+.
T Consensus 6 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 75 (547)
T PRK10522 6 LVWRQYRW-PFISVMALSLASAALGIGLIAFINQRLIETADT-SL----LVLP----EFLGLLLLLMAVTLGSQLALTTL 75 (547)
T ss_pred HHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cc----hHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 344555555666665554 46677888886532 11 1111 11112222344667788888889
Q ss_pred HHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000789 122 GERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVL 201 (1283)
Q Consensus 122 ~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~ 201 (1283)
+.++..++|.+++++++++|+++|+++ ++|++++|+++|++.+...+. .++.++..++.+++.++++++++|.+++++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~ 153 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQL-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVT 153 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhcc-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999986 999999999999999998765 467788888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 202 LACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGE---KQAIEKYNNKLQVAYRAAVQQGMVS 278 (1283)
Q Consensus 202 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (1283)
++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++++ ++.+ +.+.++|++..++..+...+.....
T Consensus 154 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (547)
T PRK10522 154 AIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFH 232 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHH
Confidence 99999988888888999888888889999999999999999999996 4443 4567788887777776666555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 000789 279 GIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKI 358 (1283)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 358 (1283)
.....+..++......+.+++++... .+ +.+.+..+.++.+....|+..+...+..++.+..+.+|+.++++.+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~ 309 (547)
T PRK10522 233 LSAVNWSNIMMLGAIGLVFYMANSLG-WA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKA 309 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-cC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 44333332222222233333333221 12 3333333334444456799999999999999999999999987644322
Q ss_pred CCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECC
Q 000789 359 DPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDG 438 (1283)
Q Consensus 359 ~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 438 (1283)
+... .... +..+.|+++||+|+|+++ .++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||
T Consensus 310 ~~~~--~~~~-~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 384 (547)
T PRK10522 310 EFPR--PQAF-PDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384 (547)
T ss_pred cccc--cccc-CcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 1111 1111 113579999999999742 3699999999999999999999999999999999999999999999999
Q ss_pred cccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 000789 439 IDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQ 518 (1283)
Q Consensus 439 ~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 518 (1283)
+|+++++.+++|++|+||+||+++|++|+++| + ++.++++++++++..++.+++.. |+|. .+|.+|||||
T Consensus 385 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq 454 (547)
T PRK10522 385 KPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQ 454 (547)
T ss_pred EECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHH
Confidence 99999999999999999999999999999999 2 34566666666666655544432 3221 1478999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEeEe-cCh
Q 000789 519 KQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRNADLIAVVHQGKIVEK-GTH 595 (1283)
Q Consensus 519 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~-g~~ 595 (1283)
|||++||||++++|+|||||||||+||+++++.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|. |++
T Consensus 455 ~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~ 534 (547)
T PRK10522 455 KKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEE 534 (547)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCc
Confidence 999999999999999999999999999999999999987654 47999999999999999999999999999986 443
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-67 Score=650.71 Aligned_cols=484 Identities=25% Similarity=0.336 Sum_probs=340.1
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++||+++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 5899999999962 24699999999999999999999999999999999999999999999975 2469
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCC----------------CCH----------HHHHHHHHH-------hcHHHHHHhC
Q 000789 454 GLVSQEPILFAT-SLRENIAYGKEN----------------ATD----------QEIRTAIEL-------ANAAKFIDKL 499 (1283)
Q Consensus 454 ~~v~Q~~~l~~~-ti~~ni~~~~~~----------------~~~----------~~~~~~~~~-------~~~~~~i~~l 499 (1283)
|||+|+|.+++. |+.||+.++... ... .++.+.++. ..+.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999875 999999875310 000 011111111 1233445554
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-c
Q 000789 500 PKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-A 578 (1283)
Q Consensus 500 p~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~ 578 (1283)
|++ .......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 553 2466778999999999999999999999999999999999999999999998863 599999999999976 9
Q ss_pred CEEEEEeCCEEe-EecChhHHhcCCCChhHHHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccc
Q 000789 579 DLIAVVHQGKIV-EKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISR 657 (1283)
Q Consensus 579 d~i~vl~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1283)
|+|++|++|+++ ..|+++++.+.. ..+. ..... .
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~~~--------~~~~--~~~~~--------------~--------------------- 262 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLEQK--------AKRL--AQEEK--------------Q--------------------- 262 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHHHH--------HHHH--HHHHH--------------H---------------------
Confidence 999999999986 677777654320 0000 00000 0
Q ss_pred cCCCCCCccccccCCCCCCCccccccCCCCCCCCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 000789 658 HSSGSRHSFGFTYGVPGPINVFETEEGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGL 737 (1283)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1283)
.+.. ...+.+..
T Consensus 263 --------------------------------------~~~~-~~~~~~~~----------------------------- 274 (556)
T PRK11819 263 --------------------------------------EAAR-QKALKREL----------------------------- 274 (556)
T ss_pred --------------------------------------HHHH-HHHHHHHH-----------------------------
Confidence 0000 00000000
Q ss_pred HHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChh
Q 000789 738 LLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSG 817 (1283)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G 817 (1283)
.|.+. .+.+
T Consensus 275 ---------------------------------------------------------------------~~~~~--~~~~ 283 (556)
T PRK11819 275 ---------------------------------------------------------------------EWVRQ--SPKA 283 (556)
T ss_pred ---------------------------------------------------------------------HHHHH--hhhh
Confidence 00000 0000
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000789 818 SVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEE 897 (1283)
Q Consensus 818 ~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (1283)
+ . .
T Consensus 284 ----------------------------------------------------------------~---~-~--------- 286 (556)
T PRK11819 284 ----------------------------------------------------------------R---Q-A--------- 286 (556)
T ss_pred ----------------------------------------------------------------h---H-H---------
Confidence 0 0 0
Q ss_pred HHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHH
Q 000789 898 ASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFG 977 (1283)
Q Consensus 898 ~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~ 977 (1283)
+. +.
T Consensus 287 -----------------------------~~-----~~------------------------------------------ 290 (556)
T PRK11819 287 -----------------------------KS-----KA------------------------------------------ 290 (556)
T ss_pred -----------------------------HH-----HH------------------------------------------
Confidence 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcc
Q 000789 978 QVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEIL-DSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQ 1056 (1283)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~-~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~ 1056 (1283)
.....++..+.. ...++........ .....+..|+++||+++|++ .+
T Consensus 291 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~---~~ 338 (556)
T PRK11819 291 ----------------------------RLARYEELLSEEYQKRNETNEIFIPP-GPRLGDKVIEAENLSKSFGD---RL 338 (556)
T ss_pred ----------------------------HHHHHHHhhcccccccCCCceeecCC-CCCCCCeEEEEEeEEEEECC---ee
Confidence 000000000000 0000000000000 00011235999999999974 35
Q ss_pred cccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCC-CCC-hhhHHH
Q 000789 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEP-VLF-NETIRT 1134 (1283)
Q Consensus 1057 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp-~Lf-~gTIre 1134 (1283)
+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+++ ++ +|+||||++ .++ +.|++|
T Consensus 339 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e 407 (556)
T PRK11819 339 LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWE 407 (556)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EEEEEeCchhhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999954 21 599999997 555 459999
Q ss_pred HHhcCCC-CC--CCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCC
Q 000789 1135 NIAYGKQ-GG--ATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211 (1283)
Q Consensus 1135 Nl~~g~~-~~--~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD 1211 (1283)
|+.++.. .. ..+.+..++++..++.+. ........||||||||++||||++.+|++|||||||++||
T Consensus 408 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD 477 (556)
T PRK11819 408 EISGGLDIIKVGNREIPSRAYVGRFNFKGG----------DQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477 (556)
T ss_pred HHHhhcccccccccHHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 9986521 01 112333444444443210 1223345799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeC-CEEEE-ecChHHHHhc
Q 000789 1212 AESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKN-GVIAE-QGSHDALMKI 1267 (1283)
Q Consensus 1212 ~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~-G~Ive-~Gt~~eLl~~ 1267 (1283)
+.+...+.+.|++. . .|+|+|||+++.+.. ||+|++|++ |++.+ .|+++++++.
T Consensus 478 ~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 478 VETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99999999999986 3 499999999999876 999999986 88874 7898888764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-66 Score=643.95 Aligned_cols=484 Identities=25% Similarity=0.357 Sum_probs=339.7
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
-|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 23699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCC-----------------CCH---------HHHHHHHHHhcH-------HHHHHhC
Q 000789 454 GLVSQEPILFAT-SLRENIAYGKEN-----------------ATD---------QEIRTAIELANA-------AKFIDKL 499 (1283)
Q Consensus 454 ~~v~Q~~~l~~~-ti~~ni~~~~~~-----------------~~~---------~~~~~~~~~~~~-------~~~i~~l 499 (1283)
|||+|+|.+++. |++||+.++... ..+ .++.++++.++. .+.++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 999999998865 999999875310 001 123333333332 2344444
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-c
Q 000789 500 PKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-A 578 (1283)
Q Consensus 500 p~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~ 578 (1283)
|++. ......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|.+. ++|+|+|||+++.+.. |
T Consensus 151 --~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 4532 45667899999999999999999999999999999999999999999999876 3699999999999976 9
Q ss_pred CEEEEEeCCEEe-EecChhHHhcCCCChhHHHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccc
Q 000789 579 DLIAVVHQGKIV-EKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISR 657 (1283)
Q Consensus 579 d~i~vl~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1283)
|+|++|++|+++ ..|+++++++.. . ...+. . . .
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~~~--------~-----~~~~~------~--~----~--------------------- 259 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLEQK--------E-----KRLEQ------E--E----K--------------------- 259 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHHHH--------H-----HHHHH------H--H----H---------------------
Confidence 999999999976 667777654320 0 00000 0 0 0
Q ss_pred cCCCCCCccccccCCCCCCCccccccCCCCCCCCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 000789 658 HSSGSRHSFGFTYGVPGPINVFETEEGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGL 737 (1283)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1283)
+. . .. ...+.
T Consensus 260 -------------------------~~-----------~-~~-~~~~~-------------------------------- 269 (552)
T TIGR03719 260 -------------------------EE-----------S-AR-QKALK-------------------------------- 269 (552)
T ss_pred -------------------------HH-----------H-HH-HHHHH--------------------------------
Confidence 00 0 00 00000
Q ss_pred HHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChh
Q 000789 738 LLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSG 817 (1283)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G 817 (1283)
T Consensus 270 -------------------------------------------------------------------------------- 269 (552)
T TIGR03719 270 -------------------------------------------------------------------------------- 269 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000789 818 SVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEE 897 (1283)
Q Consensus 818 ~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (1283)
+. ..| .+. . . .
T Consensus 270 ----~~----------------------------------~~~-----------------------~~~-~--~-----~ 280 (552)
T TIGR03719 270 ----RE----------------------------------LEW-----------------------VRS-S--P-----K 280 (552)
T ss_pred ----HH----------------------------------HHH-----------------------HHh-h--h-----h
Confidence 00 000 000 0 0 0
Q ss_pred HHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHH
Q 000789 898 ASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFG 977 (1283)
Q Consensus 898 ~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~ 977 (1283)
. . ++ .......
T Consensus 281 -~---~---------~~--~~~~~~~------------------------------------------------------ 291 (552)
T TIGR03719 281 -A---R---------QA--KSKARLA------------------------------------------------------ 291 (552)
T ss_pred -h---H---------HH--HHHHHHH------------------------------------------------------
Confidence 0 0 00 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcc
Q 000789 978 QVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEI-LDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQ 1056 (1283)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~-~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~ 1056 (1283)
..++..+. ....++........ .....+..|+++||+++|++ .+
T Consensus 292 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~---~~ 336 (552)
T TIGR03719 292 -------------------------------RYEELLSQEFQKRNETAEIYIPP-GPRLGDKVIEAENLSKGFGD---KL 336 (552)
T ss_pred -------------------------------HHHhhhhhcccccCCCceeecCC-CCCCCCeEEEEeeEEEEECC---ee
Confidence 00000000 00000000000000 00011235999999999974 35
Q ss_pred cccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCCC-CC-hhhHHH
Q 000789 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPV-LF-NETIRT 1134 (1283)
Q Consensus 1057 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~-Lf-~gTIre 1134 (1283)
+|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++ ++ +|+||||++. ++ +.|++|
T Consensus 337 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e 405 (552)
T TIGR03719 337 LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWE 405 (552)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EEEEEeCCccccCCCCcHHH
Confidence 99999999999999999999999999999999999999999999954 21 6999999973 55 469999
Q ss_pred HHhcCCC-CCCC--HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCC
Q 000789 1135 NIAYGKQ-GGAT--EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211 (1283)
Q Consensus 1135 Nl~~g~~-~~~s--d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD 1211 (1283)
|+.++.. .... +.+..++++..++.+. ........||||||||++||||++.+|++|||||||++||
T Consensus 406 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD 475 (552)
T TIGR03719 406 EISGGLDIIQLGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475 (552)
T ss_pred HHHhhccccccCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 9987521 1111 2233344444433211 1223345799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeC-CEEE-EecChHHHHhc
Q 000789 1212 AESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKN-GVIA-EQGSHDALMKI 1267 (1283)
Q Consensus 1212 ~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~-G~Iv-e~Gt~~eLl~~ 1267 (1283)
+.+...+.+.|+++ ++|+|+|||+++.+.. ||+|++|++ |+++ ..|+++++.+.
T Consensus 476 ~~~~~~l~~~l~~~--~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 476 VETLRALEEALLEF--AGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred HHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 99999999999987 3599999999999876 999999987 6877 45888877653
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-65 Score=631.25 Aligned_cols=473 Identities=19% Similarity=0.222 Sum_probs=376.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 771 NLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAA 850 (1283)
Q Consensus 771 ~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~ 850 (1283)
..++.++..++....+.++..++|.++|+++++.|++||++ +++|++++|+++|++.+...+. .+..++..++.+++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~--~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~ 137 (547)
T PRK10522 61 LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQ--LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLG 137 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc--cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999995 8899999999999999998765 46777888888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccH---HHHHHHHHH
Q 000789 851 GLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSE---EKVMDLYEK 927 (1283)
Q Consensus 851 ~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~---~~~~~~~~~ 927 (1283)
++++++.++|++++++++++|+.++..++..+..++..++.++...+..+.+.|.+.|+++++ ++.+ +.+.++|.+
T Consensus 138 ~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~ 216 (547)
T PRK10522 138 SAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEP 216 (547)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhH
Confidence 899999999999999999999888777777777676677778888889999999999999995 4443 456777777
Q ss_pred HHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 928 KCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAK 1007 (1283)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1283)
..++..+...+..........+..........+.++++... +..+.+....+..+......|+..+...+..+..+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 217 DAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776665555444333322222222222222222333221 112233333333333345578999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHH
Q 000789 1008 DSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIAL 1087 (1283)
Q Consensus 1008 ~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~l 1087 (1283)
.+.+|+.++.+.+++.+... ..+. +..+.|+++||+|+|+++ .++|+|+||+|+|||++|||||||||||||+++
T Consensus 294 ~a~~ri~~l~~~~~~~~~~~--~~~~-~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~l 368 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEFPR--PQAF-PDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAML 368 (547)
T ss_pred HHHHHHHHHhcccccccccc--cccc-CcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 99999999875433221111 1111 113579999999999843 469999999999999999999999999999999
Q ss_pred HhccCCCCcceEEECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCC
Q 000789 1088 IERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPH 1167 (1283)
Q Consensus 1088 L~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~ 1167 (1283)
|+|+|+|++|+|.+||+|+++++.+++|++++||||||.+|++|+++| + .+.++++++++++.+++.+++. .|+
T Consensus 369 l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~--~~~~~~~~~~~~~~~~l~~~~~-~~~ 442 (547)
T PRK10522 369 LTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G--KPANPALVEKWLERLKMAHKLE-LED 442 (547)
T ss_pred HhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c--CchHHHHHHHHHHHcCCchhhh-ccc
Confidence 999999999999999999999999999999999999999999999999 3 2577888888888888776654 244
Q ss_pred CcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhhcC
Q 000789 1168 GYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKNAD 1245 (1283)
Q Consensus 1168 Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~~D 1245 (1283)
|. .+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.+.+.. +++|+|+||||+++++.||
T Consensus 443 ~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d 517 (547)
T PRK10522 443 GR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHAD 517 (547)
T ss_pred cC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCC
Confidence 42 1478999999999999999999999999999999999999999999997654 4799999999999999999
Q ss_pred EEEEEeCCEEEEe-cChHHHHh
Q 000789 1246 IIAVVKNGVIAEQ-GSHDALMK 1266 (1283)
Q Consensus 1246 ~I~vl~~G~Ive~-Gt~~eLl~ 1266 (1283)
+|++|++|+++|. |++.+-..
T Consensus 518 ~i~~l~~G~i~e~~~~~~~~~~ 539 (547)
T PRK10522 518 RLLEMRNGQLSELTGEERDAAS 539 (547)
T ss_pred EEEEEECCEEEEecCCchhhhh
Confidence 9999999999987 66665544
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-65 Score=639.96 Aligned_cols=531 Identities=15% Similarity=0.126 Sum_probs=441.4
Q ss_pred hHHHHHHhhchhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 37 PFYKLFAFADKQDA----VLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAF 112 (1283)
Q Consensus 37 ~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (1283)
.+++++++++|+++ ..+++.+++.++.+++....|++.+.++|.+...+...+...+..++++++++.++..+..|
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667888877653 25667777778888888999999999999876443322322233333344444555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 113 LQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALA 192 (1283)
Q Consensus 113 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 192 (1283)
+..++......++..++|.+++++....++.+||+ ++|++.+|+++|++.+.+.+...+..++..++.+++.+++++.
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888888999999999999988889999984 6899999999999999999999999999999999888887776
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 000789 193 -RGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAA 271 (1283)
Q Consensus 193 -~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 271 (1283)
++|.+++++++.+|+.+++.+++.+++.+..++.++..++..+.++|.++|+++||+|+.|+.+.++|++..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-h----cCccHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHH
Q 000789 272 VQQGMVSGIGLGVLMLTVIG--TYGLAVWYGSKLII-E----KGYNGGTVIN-VIMA---IMTGGMSLGQTSPCLNAFAG 340 (1283)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~v~-~----~~~t~g~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~ 340 (1283)
.+..++.+...++..++... ..++.++.|...+. . |.+|.|.+++ ++.+ +.....|+..+...+..+++
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888877776542 23333334443332 2 6789888776 4444 34557899999999999999
Q ss_pred HHHHHHHHHHHHccCCCCCCC--------C-CCC-------------CcccCccccEEEEEEEEECCCCCCCcccccceE
Q 000789 341 GQAAAYKMFETIKRKPKIDPY--------D-TSG-------------ITLEKIEGEIELRDVYFRYPARPEVQIFAGFSL 398 (1283)
Q Consensus 341 ~~~a~~ri~~~l~~~~~~~~~--------~-~~~-------------~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~ 398 (1283)
+.++.+|++++++.+++.+.. . ... .......+.|+++||+|+|+++ .++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceE
Confidence 999999999999754332100 0 000 0011123569999999999742 369999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCC---
Q 000789 399 HVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGK--- 475 (1283)
Q Consensus 399 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~--- 475 (1283)
+|++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++|||.++.
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999874 56899999999999999999999874
Q ss_pred ----CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 000789 476 ----ENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI 551 (1283)
Q Consensus 476 ----~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~ 551 (1283)
+..+++++.++++.+++++++++ |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 33567889999999999999988 899999876 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeC
Q 000789 552 VQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQ 586 (1283)
Q Consensus 552 i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~ 586 (1283)
+.+.+++. ++|+|+||||++.++.||+|++|+.
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999874 7999999999999999999999973
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-64 Score=670.04 Aligned_cols=215 Identities=24% Similarity=0.366 Sum_probs=178.3
Q ss_pred ccEEEEEEEEECCCCC----------CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC--CcceEEECCcc
Q 000789 1038 GAIELRCVSFKYPTRP----------DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP--DSGHVLLDNIE 1105 (1283)
Q Consensus 1038 g~I~~~nVsf~Y~~~~----------~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~--~~G~I~idG~d 1105 (1283)
..+.|+||++..+..+ ...+|+|||++|+|||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 3699999999985321 23699999999999999999999999999999999999773 68999999988
Q ss_pred CCCCChHHHhcceEEEccCCCCCh-hhHHHHHhcCC----CCCCCHHH----HHHHHHHhChHHHHHhCCCCcccccCCC
Q 000789 1106 LPKFKLSWLRQQMGLVSQEPVLFN-ETIRTNIAYGK----QGGATEEE----IIAATEASNAHNFISALPHGYETNVGER 1176 (1283)
Q Consensus 1106 i~~~~~~~lR~~i~~V~Qdp~Lf~-gTIreNl~~g~----~~~~sd~e----i~~al~~a~l~~~I~~lp~Gldt~vge~ 1176 (1283)
..+ ..+|+.++||+|++.++. .|++|||.++. +.+.++++ +.+.++..++.+. .|+.+|..
T Consensus 946 ~~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~ 1015 (1470)
T PLN03140 946 KKQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLP 1015 (1470)
T ss_pred CCh---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCC
Confidence 642 456788999999987765 69999997642 11233332 4566666666543 46777754
Q ss_pred C-CCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchH-H-hhcCEEEEEeC
Q 000789 1177 G-VQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTT-I-KNADIIAVVKN 1252 (1283)
Q Consensus 1177 G-~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~t-i-~~~D~I~vl~~ 1252 (1283)
+ ..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|+++. +++|||+++|+++. + ..||++++|++
T Consensus 1016 ~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~ 1095 (1470)
T PLN03140 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1095 (1470)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcC
Confidence 4 5799999999999999999999999999999999999999999999875 47899999999984 4 56999999986
Q ss_pred -CEEEEecChH
Q 000789 1253 -GVIAEQGSHD 1262 (1283)
Q Consensus 1253 -G~Ive~Gt~~ 1262 (1283)
|+++++|++.
T Consensus 1096 gG~~v~~G~~~ 1106 (1470)
T PLN03140 1096 GGQVIYSGPLG 1106 (1470)
T ss_pred CCEEEEECCcc
Confidence 8999999864
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-65 Score=637.81 Aligned_cols=201 Identities=25% Similarity=0.370 Sum_probs=166.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999974 35999999999999999999999999999999999999999999999741 269
Q ss_pred EEEccCC--CCC-hhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHc
Q 000789 1119 GLVSQEP--VLF-NETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVL 1195 (1283)
Q Consensus 1119 ~~V~Qdp--~Lf-~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll 1195 (1283)
+|++|++ .++ ..|+.+++... .+...++++.+.++..++.+- -.+.+ ...||||||||++||||++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~------~~~~~----~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARL-APQELEQKLRDYLGGFGFQGD------KVTEE----TRRFSGGEKARLVLALIVW 446 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHh-CchhhHHHHHHHHHHcCCChh------HhcCc----hhhCCHHHHHHHHHHHHHh
Confidence 9999985 343 34888887421 112234556666665554210 12233 3479999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEE-EecChHHHHh
Q 000789 1196 KNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIA-EQGSHDALMK 1266 (1283)
Q Consensus 1196 ~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Iv-e~Gt~~eLl~ 1266 (1283)
.+|+||||||||++||+.+...+.+.|+++ +.|||+|||+++.+.. ||+|++|++|+++ ..|++++..+
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999999999999999999999986 4599999999999976 9999999999997 6799988743
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=626.62 Aligned_cols=202 Identities=26% Similarity=0.414 Sum_probs=165.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 5999999999974 35999999999999999999999999999999999999999999999 4332 59
Q ss_pred EEEccCC-CCCh-hhHHHHHhcCCCC-CCC--HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1119 GLVSQEP-VLFN-ETIRTNIAYGKQG-GAT--EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1119 ~~V~Qdp-~Lf~-gTIreNl~~g~~~-~~s--d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
+|++|++ .++. .|+.||+.++... ... +.++.+.++..++.+ +..+.++ ..||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP------KRAMTPV----KALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH------HHHhChh----hhCCHHHHHHHHHHHH
Confidence 9999986 3554 5999999864221 011 333444444443321 1123333 4799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEe-CCEEEEe-cChHHHHh
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVK-NGVIAEQ-GSHDALMK 1266 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~-~G~Ive~-Gt~~eLl~ 1266 (1283)
++.+|++|||||||++||+.+...+.+.|++. ++|+|+|||+++.+.. ||+|++|+ +|++.++ |++++.++
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999886 5699999999999976 99999998 8999875 88888754
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=624.75 Aligned_cols=201 Identities=29% Similarity=0.405 Sum_probs=166.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|++. .++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++ +.+|
T Consensus 508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 59999999999642 3589999999999999999999999999999999999999999999875 3479
Q ss_pred EEEccCCCCChhhHHHHHh--cC-CCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHc
Q 000789 1119 GLVSQEPVLFNETIRTNIA--YG-KQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVL 1195 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~gTIreNl~--~g-~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll 1195 (1283)
+|+||++. ...++.+|.. +. ..+..+++++.++++..++.+.. .......||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHHh
Confidence 99999973 2334555532 11 01234577788888877775321 11234589999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEE-EecChHHHH
Q 000789 1196 KNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIA-EQGSHDALM 1265 (1283)
Q Consensus 1196 ~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Iv-e~Gt~~eLl 1265 (1283)
++|++|||||||++||+.+...+.+.|.+. ++|+|+|||+++.+.. ||+|++|++|+++ ..|++++..
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999999999999999999999875 3599999999999986 9999999999998 578887654
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-63 Score=573.60 Aligned_cols=453 Identities=26% Similarity=0.423 Sum_probs=356.0
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHH-HHhcc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLK-WIREK 452 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~-~~r~~ 452 (1283)
-++++|++++|++ .++|+||||++.+||++|++|.||||||||+|+|+|.|+|++|+|.+||+++.-.++. .....
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4889999999974 5799999999999999999999999999999999999999999999999999876654 55678
Q ss_pred cEEEccCCCCCcc-cHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000789 453 IGLVSQEPILFAT-SLRENIAYGKENAT------DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIA 525 (1283)
Q Consensus 453 i~~v~Q~~~l~~~-ti~~ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiA 525 (1283)
|+.|+||..|++. ||.|||.+|++... ..+..+.+ .+.++.+ |++........+||+||||-|+||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A-----~~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRA-----RELLARL--GLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHH-----HHHHHHc--CCCCChhhhhhhCCHHHHHHHHHH
Confidence 9999999999976 99999999976432 23333332 2445555 432225555678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecCh-hHHhcCC
Q 000789 526 RAILKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTH-DELIKDP 602 (1283)
Q Consensus 526 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~-~~l~~~~ 602 (1283)
||+..+++|||||||||+|+....+.+.+.+++++ +|.++|+||||++++.. ||||.||.||+.+..++. .++-.
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~-- 235 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE-- 235 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCH--
Confidence 99999999999999999999999999999999986 57899999999999876 999999999999865431 00000
Q ss_pred CChhHHHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCccccccCCCCCCCccccc
Q 000789 603 EGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETE 682 (1283)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1283)
.++.+
T Consensus 236 ----~~lv~----------------------------------------------------------------------- 240 (500)
T COG1129 236 ----DELVR----------------------------------------------------------------------- 240 (500)
T ss_pred ----HHHHH-----------------------------------------------------------------------
Confidence 00000
Q ss_pred cCCCCCCCCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHH
Q 000789 683 EGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWAL 762 (1283)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1283)
.+
T Consensus 241 --------------------------------------------------------------~M---------------- 242 (500)
T COG1129 241 --------------------------------------------------------------LM---------------- 242 (500)
T ss_pred --------------------------------------------------------------Hh----------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000789 763 IYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVV 842 (1283)
Q Consensus 763 ~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~ 842 (1283)
.|+
T Consensus 243 -----------------------------------------------------vGr------------------------ 245 (500)
T COG1129 243 -----------------------------------------------------VGR------------------------ 245 (500)
T ss_pred -----------------------------------------------------hCc------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHH
Q 000789 843 QNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVM 922 (1283)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~ 922 (1283)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 923 DLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPD 1002 (1283)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1283)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHH
Q 000789 1003 TTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKS 1082 (1283)
Q Consensus 1003 ~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKS 1082 (1283)
++-+..|. ..... .....++++|++..- .++|+||++++||.+||.|-=|||+|
T Consensus 246 ------------~~~~~~~~-~~~~~------~~~~~l~v~~l~~~~-------~~~dvSf~vr~GEIlGiaGLvGaGRT 299 (500)
T COG1129 246 ------------ELEDLFPE-PPEEG------IGEPVLEVRNLSGGG-------KVRDVSFTVRAGEILGIAGLVGAGRT 299 (500)
T ss_pred ------------chhhhccc-ccccC------CCCcEEEEecCCCCC-------ceeCceeEEeCCcEEEEeccccCCHH
Confidence 00000000 00000 001146788876421 47899999999999999999999999
Q ss_pred HHHHHHhccCCCCcceEEECCccCCCCC-hHHHhcceEEEccCCC----CChhhHHHHHhcCCCCCCCHH-HHHHHHHHh
Q 000789 1083 TVIALIERFYDPDSGHVLLDNIELPKFK-LSWLRQQMGLVSQEPV----LFNETIRTNIAYGKQGGATEE-EIIAATEAS 1156 (1283)
Q Consensus 1083 TL~~lL~rl~~~~~G~I~idG~di~~~~-~~~lR~~i~~V~Qdp~----Lf~gTIreNl~~g~~~~~sd~-ei~~al~~a 1156 (1283)
-++++|+|..++.+|+|.+||+++.--+ .+..+..|+|||-|-. +...||++|+.+......+.. -+....++.
T Consensus 300 El~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~ 379 (500)
T COG1129 300 ELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERA 379 (500)
T ss_pred HHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHH
Confidence 9999999999999999999999886655 5688899999998873 557899999976522111111 244455555
Q ss_pred ChHHHHHhCC---CCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEE
Q 000789 1157 NAHNFISALP---HGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTV 1232 (1283)
Q Consensus 1157 ~l~~~I~~lp---~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI 1232 (1283)
.+.+++.+|. .+.+.+++ +||||.+|+++|||+|..+|+||||||||.++|..+.++|.+.|+++. +|++||
T Consensus 380 ~~~~~~~~l~Ik~~s~~~~v~----~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail 455 (500)
T COG1129 380 LAERYIRRLRIKTPSPEQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAIL 455 (500)
T ss_pred HHHHHHHhcCcccCCccchhh----cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEE
Confidence 6667777772 23445554 799999999999999999999999999999999999999999999986 579999
Q ss_pred EEecCchHHh-hcCEEEEEeCCEEEEe
Q 000789 1233 VVAHRLTTIK-NADIIAVVKNGVIAEQ 1258 (1283)
Q Consensus 1233 ~IaHrl~ti~-~~D~I~vl~~G~Ive~ 1258 (1283)
+||-.+..+. .||||+||.+|+|+..
T Consensus 456 ~iSSElpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 456 MISSELPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred EEeCChHHHHhhCCEEEEEECCEEEEE
Confidence 9999998886 5999999999999864
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-61 Score=603.51 Aligned_cols=529 Identities=15% Similarity=0.121 Sum_probs=431.5
Q ss_pred HHHHHHhhcChhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000789 704 MRRLAYLNKPEFP-----VLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPED-KLRKDSRFWALIYLVLGIINLIAVPF 777 (1283)
Q Consensus 704 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~ 777 (1283)
+++++++.+|+++ .+++.+++..+...+....+++.+.+++....... ........|.++++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777765 45555666666666666677777777765543211 11111233444555566667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 778 QNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFT 857 (1283)
Q Consensus 778 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~ 857 (1283)
..++......++..++|+..|++....++.|||+ ++|++.+|+++|++.+.+.+...+..++..++.++++++.++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999999999988899999983 6899999999999999999999999999999999988887776
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhH
Q 000789 858 -ANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNG 936 (1283)
Q Consensus 858 -~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~ 936 (1283)
.+|.+++++++.+|+..++..+..+...+..++.++..++..+.+.|.+.|+++|++|+.++.+.++|.+..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888888889999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-hc----CCcCHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHH
Q 000789 937 VRRGILSGAGFGFSFLVLYC--TNAFCFYIGSVLV-EH----GKATFGQVFKV-FF---ALTISALGVSQTSAMAPDTTK 1005 (1283)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~-~~----g~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~ 1005 (1283)
.+...+......+..++... ..+..++.|...+ .. |.++.|.++.. .. ++.....|+..+.....++..
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777776666542 2223333334233 22 78888877663 22 245567899999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCC--------CC-CcC-------------CccCCCcccEEEEEEEEECCCCCCcccccceeE
Q 000789 1006 AKDSAASIFEILDSKPKIDS--------SK-DEG-------------MTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCL 1063 (1283)
Q Consensus 1006 ~~~a~~ri~~~~~~~~~~~~--------~~-~~~-------------~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~ 1063 (1283)
+..+.+|++++++.+++... .. ... .......+.|+++||+|+|+++ .++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceE
Confidence 99999999999875332110 00 000 0011133569999999999743 369999999
Q ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCC--
Q 000789 1064 SIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-- 1141 (1283)
Q Consensus 1064 ~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-- 1141 (1283)
+|++||++||+||||||||||+++|+|+++|++|+|.+|+ |++++||||+|.+|++|++||+.++..
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999874 678999999999999999999998631
Q ss_pred ----CCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHH
Q 000789 1142 ----GGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217 (1283)
Q Consensus 1142 ----~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~ 1217 (1283)
++.++++++++++.+++++++.. |.|+||..+ .+.+||||||||++||||++++|++||||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 24678899999999999999987 999999986 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeC
Q 000789 1218 VQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKN 1252 (1283)
Q Consensus 1218 I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~ 1252 (1283)
+++.+++. ++|+|+||||+++++.||+|++|++
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999874 8999999999999999999999973
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=612.96 Aligned_cols=192 Identities=23% Similarity=0.309 Sum_probs=162.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.++++|++++|++ ..|+++||+|++||++||+|+||||||||+++|+|+.+|++|+|.++ ..+
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4999999999963 24999999999999999999999999999999999999999999986 159
Q ss_pred EEEccCCCC-ChhhHHHHHhcCCCCCC-CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHcc
Q 000789 1119 GLVSQEPVL-FNETIRTNIAYGKQGGA-TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLK 1196 (1283)
Q Consensus 1119 ~~V~Qdp~L-f~gTIreNl~~g~~~~~-sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~ 1196 (1283)
+|+||++.+ ++.|++||+.++.. .. .+..+.++++..++.+... . ....||||||||++|||||++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~L~~l~l~~~~~-------~----~~~~LSGGe~QRvaiAraL~~ 470 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITD-DLGSSYYKSEIIKPLQLERLLD-------K----NVKDLSGGELQRVAIAACLSR 470 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhh-hcChHHHHHHHHHHCCCHHHHh-------C----CcccCCHHHHHHHHHHHHHhc
Confidence 999999865 57799999986521 22 2334566677766654432 2 234799999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecC
Q 000789 1197 NPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260 (1283)
Q Consensus 1197 ~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt 1260 (1283)
+|+||||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++ ++...|+
T Consensus 471 ~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 471 DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 9999999999999999999999999998753 7899999999999876 999999975 7777665
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-61 Score=576.29 Aligned_cols=486 Identities=27% Similarity=0.366 Sum_probs=347.1
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++|++++|++ +++|+|+||++.+|+++||||+||||||||+++|+|...|++|+|..++. -++
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 4889999999963 46999999999999999999999999999999999999999999998752 269
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCCCH--HHHHHHHH-------------------------HhcHHHHHHhCCCCccc
Q 000789 454 GLVSQEPILFAT-SLRENIAYGKENATD--QEIRTAIE-------------------------LANAAKFIDKLPKGLDT 505 (1283)
Q Consensus 454 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~--~~~~~~~~-------------------------~~~~~~~i~~lp~g~~t 505 (1283)
+|++|++.+.+. ||.+.+..+...... .+.+.+.. .+.+...+..+ |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 999999999976 999999887542111 11111110 02222333344 4444
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEE
Q 000789 506 MAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVV 584 (1283)
Q Consensus 506 ~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl 584 (1283)
. .....+||||||.|++|||||+.+||+|||||||++||.++..++.+.|.+. ++ |+|+||||..++.+ |++|+.+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 4 4556789999999999999999999999999999999999999999999875 44 99999999999987 9999999
Q ss_pred eCCEEeEecChhHHhcCCCChhHHHHHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCC
Q 000789 585 HQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRH 664 (1283)
Q Consensus 585 ~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1283)
+.|++... .|.|..+.+........+.. .
T Consensus 224 d~g~l~~y----------~Gny~~~~~~r~~~~~~~~~-------------~---------------------------- 252 (530)
T COG0488 224 DRGKLTPY----------KGNYSSYLEQKAERLRQEAA-------------A---------------------------- 252 (530)
T ss_pred cCCceeEe----------cCCHHHHHHHHHHHHHHHHH-------------H----------------------------
Confidence 99987643 34554443321110000000 0
Q ss_pred ccccccCCCCCCCccccccCCCCCCCCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 665 SFGFTYGVPGPINVFETEEGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIR 744 (1283)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1283)
.+......+...
T Consensus 253 --------------------------------~~~~~~~~~~~~------------------------------------ 264 (530)
T COG0488 253 --------------------------------YEKQQKELAKEQ------------------------------------ 264 (530)
T ss_pred --------------------------------HHHHHHHHHHHH------------------------------------
Confidence 000000000000
Q ss_pred HhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHh
Q 000789 745 MFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLS 824 (1283)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~ 824 (1283)
T Consensus 265 -------------------------------------------------------------------------------- 264 (530)
T COG0488 265 -------------------------------------------------------------------------------- 264 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000789 825 TDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVAND 904 (1283)
Q Consensus 825 ~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 904 (1283)
T Consensus 265 -------------------------------------------------------------------------------- 264 (530)
T COG0488 265 -------------------------------------------------------------------------------- 264 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHH
Q 000789 905 AVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFF 984 (1283)
Q Consensus 905 ~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~ 984 (1283)
.|.+++........+
T Consensus 265 ---------------~~i~r~~~~~~~~k~-------------------------------------------------- 279 (530)
T COG0488 265 ---------------EWIRRGKAAASKAKK-------------------------------------------------- 279 (530)
T ss_pred ---------------HHHHHHHhccchHHH--------------------------------------------------
Confidence 000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCCCCC-C--CcCCcc-CCCcccEEEEEEEEECCCCCCccccc
Q 000789 985 ALTISALGVSQTSAMAPDTTKAKDSAASIFEI-LDSKPKIDSS-K--DEGMTL-SSVGGAIELRCVSFKYPTRPDVQIFR 1059 (1283)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~-~~~~~~~~~~-~--~~~~~~-~~~~g~I~~~nVsf~Y~~~~~~~vL~ 1059 (1283)
.+......+++.+- ....+..... . .-..+. ...+..++++|++++|++. .++++
T Consensus 280 ------------------a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~--~~l~~ 339 (530)
T COG0488 280 ------------------AKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLK 339 (530)
T ss_pred ------------------HHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCC--ceeec
Confidence 00000001111110 0001110000 0 000000 1123469999999999753 57999
Q ss_pred ceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCC-CCC-hhhHHHHHh
Q 000789 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEP-VLF-NETIRTNIA 1137 (1283)
Q Consensus 1060 ~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp-~Lf-~gTIreNl~ 1137 (1283)
++||.|.+|++||||||||+|||||+++|.|-..|.+|+|.++-. -++||.+|+. .++ +.|+-|++.
T Consensus 340 ~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~igyf~Q~~~~l~~~~t~~d~l~ 408 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKIGYFDQHRDELDPDKTVLEELS 408 (530)
T ss_pred CceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEEEEEEehhhhcCccCcHHHHHH
Confidence 999999999999999999999999999999999999999998642 2689999998 343 448999997
Q ss_pred cCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHH
Q 000789 1138 YGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217 (1283)
Q Consensus 1138 ~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~ 1217 (1283)
-.. ++..+.++...|...+...- -..++| ..||||||-|+.||+.++.+|.+|||||||.+||.+|...
T Consensus 409 ~~~-~~~~e~~~r~~L~~f~F~~~------~~~~~v----~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~a 477 (530)
T COG0488 409 EGF-PDGDEQEVRAYLGRFGFTGE------DQEKPV----GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA 477 (530)
T ss_pred hhC-ccccHHHHHHHHHHcCCChH------HHhCch----hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHH
Confidence 542 23347888888887766432 223444 3799999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEe-cChHHHHhc
Q 000789 1218 VQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQ-GSHDALMKI 1267 (1283)
Q Consensus 1218 I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~-Gt~~eLl~~ 1267 (1283)
+.++|.++ ..|||+|||+.+.+.. |++|+++++ ++.++ |++++..+.
T Consensus 478 Le~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 478 LEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred HHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 99999986 6699999999999988 999999999 88877 899888764
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-60 Score=533.93 Aligned_cols=463 Identities=24% Similarity=0.421 Sum_probs=364.4
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCC-HHHHhcc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ-LKWIREK 452 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-~~~~r~~ 452 (1283)
.++++++++.|| ...+++||||+|++||+.||.|+||+|||||+++|.|+|+|++|+|.+||++++--+ .+..|..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999998 356899999999999999999999999999999999999999999999999998554 5678889
Q ss_pred cEEEccCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 453 IGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 453 i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
||+|+|++.|++. ||.|||.+|.+......+........+.+..+++ |++-...+....||-||||||.|-+|||++
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence 9999999999977 9999999998642111111222223344555665 777777788889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCCChhHHH
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQL 609 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 609 (1283)
|++||||||||-|-|...+.+++.++++. .|+|+|+|||++.++.. |||+-||.+|+++..-++ . .
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~--~--~-------- 226 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP--V--A-------- 226 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecC--C--C--------
Confidence 99999999999999999999999999986 47999999999999987 999999999998643210 0 0
Q ss_pred HHHhhcCchhhhhhhccccccCchhhhhhhhhcCCCCCCccccccccccCCCCCCccccccCCCCCCCccccccCCCCCC
Q 000789 610 VRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSFGFTYGVPGPINVFETEEGDQGGA 689 (1283)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1283)
+ . .. ++
T Consensus 227 ---------------------~----~------------------------------------------t~--~e----- 232 (501)
T COG3845 227 ---------------------E----T------------------------------------------TE--EE----- 232 (501)
T ss_pred ---------------------C----C------------------------------------------CH--HH-----
Confidence 0 0 00 00
Q ss_pred CCchhhHhhhhhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHH
Q 000789 690 ERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGI 769 (1283)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 769 (1283)
+-+ .+.
T Consensus 233 --------------la~--------------------------------------lMv---------------------- 238 (501)
T COG3845 233 --------------LAE--------------------------------------LMV---------------------- 238 (501)
T ss_pred --------------HHH--------------------------------------Hhc----------------------
Confidence 000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 770 INLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIA 849 (1283)
Q Consensus 770 ~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~ 849 (1283)
|
T Consensus 239 -----------------------------------------------G-------------------------------- 239 (501)
T COG3845 239 -----------------------------------------------G-------------------------------- 239 (501)
T ss_pred -----------------------------------------------C--------------------------------
Confidence 0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHH
Q 000789 850 AGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKC 929 (1283)
Q Consensus 850 ~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~ 929 (1283)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T COG3845 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 930 EGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDS 1009 (1283)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 1009 (1283)
.++
T Consensus 240 ------------------------------------------~~v----------------------------------- 242 (501)
T COG3845 240 ------------------------------------------REV----------------------------------- 242 (501)
T ss_pred ------------------------------------------Ccc-----------------------------------
Confidence 000
Q ss_pred HHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHh
Q 000789 1010 AASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIE 1089 (1283)
Q Consensus 1010 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1089 (1283)
....+ .....+ ...-++++|++..=+. ..+.+++|||+|++||.+||.|-.|-|-+.|+.+|+
T Consensus 243 -------~~~~~--~~~~~p------g~~vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eais 305 (501)
T COG3845 243 -------VLRVV--KPPSTP------GEVVLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAIS 305 (501)
T ss_pred -------ccccc--cCCCCC------CCeEEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHh
Confidence 00000 000000 1225899999986532 246799999999999999999999999999999999
Q ss_pred ccCCCCcceEEECCccC-CCCChHHHh-cceEEEccCCC----CChhhHHHHHhcCCCCC--------CCHHHHHHHHHH
Q 000789 1090 RFYDPDSGHVLLDNIEL-PKFKLSWLR-QQMGLVSQEPV----LFNETIRTNIAYGKQGG--------ATEEEIIAATEA 1155 (1283)
Q Consensus 1090 rl~~~~~G~I~idG~di-~~~~~~~lR-~~i~~V~Qdp~----Lf~gTIreNl~~g~~~~--------~sd~ei~~al~~ 1155 (1283)
|+..|.+|+|.++|.|+ ...+...+| ..++|||.|.+ ..+.|+.||+.++.... .+..++.+.+
T Consensus 306 Glr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a-- 383 (501)
T COG3845 306 GLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA-- 383 (501)
T ss_pred CCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHH--
Confidence 99999999999999997 666766665 57999999984 66889999997653211 2233443333
Q ss_pred hChHHHHHhC---CCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceE
Q 000789 1156 SNAHNFISAL---PHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTT 1231 (1283)
Q Consensus 1156 a~l~~~I~~l---p~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~Tv 1231 (1283)
.+.++.+ +.+.++++ .+||||+.||+-+||-|.++|++||..+||-+||..+.+.|++.|.+.. +|+.|
T Consensus 384 ---~~li~~fdVr~~~~~~~a----~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AV 456 (501)
T COG3845 384 ---RELIEEFDVRAPSPDAPA----RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAV 456 (501)
T ss_pred ---HHHHHHcCccCCCCCcch----hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEE
Confidence 2344443 34455554 4799999999999999999999999999999999999999999998875 68899
Q ss_pred EEEecCchHHhh-cCEEEEEeCCEEEEecChHH
Q 000789 1232 VVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDA 1263 (1283)
Q Consensus 1232 I~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~e 1263 (1283)
++|+-+|+.+.. ||||.||.+|+|+....+++
T Consensus 457 LLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 457 LLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred EEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 999999999876 99999999999998877665
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-53 Score=475.09 Aligned_cols=238 Identities=26% Similarity=0.454 Sum_probs=224.1
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcc
Q 000789 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQ 1117 (1283)
Q Consensus 1038 g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1117 (1283)
|.|+|+||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|.+||+++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999743 3469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccC
Q 000789 1118 MGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKN 1197 (1283)
Q Consensus 1118 i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~ 1197 (1283)
|+||||+|.+|++|+++|+++. ...++++++++++.+++.+++.++|+++||.++++|.+||||||||+|||||++++
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~--~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPY--GKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred EEEECCCcccchhhHHHHhhhc--cCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999743 23678999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhccCchhHHHHH
Q 000789 1198 PKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVA 1277 (1283)
Q Consensus 1198 p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~ 1277 (1283)
|+||||||||++||+++++.+++.|++.+++||+|+||||++++..||||+||++|++++.|+|++|++. .+.|++++.
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~ 235 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAIS 235 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHh
Confidence 9999999999999999999999999998889999999999999999999999999999999999999995 789999987
Q ss_pred Hhh
Q 000789 1278 LHV 1280 (1283)
Q Consensus 1278 ~~~ 1280 (1283)
...
T Consensus 236 ~~~ 238 (275)
T cd03289 236 PSD 238 (275)
T ss_pred hcc
Confidence 653
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-52 Score=422.76 Aligned_cols=221 Identities=35% Similarity=0.585 Sum_probs=192.0
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCC-CCHHHHhcc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKK-LQLKWIREK 452 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~-~~~~~~r~~ 452 (1283)
.|+++||+++|++ ..||+|||++|++||+++|+||||||||||+++|.|+-+|++|+|.+||.++.. .+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4899999999973 469999999999999999999999999999999999999999999999987743 378889999
Q ss_pred cEEEccCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 000789 453 IGLVSQEPILFAT-SLRENIAYGKE---NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAI 528 (1283)
Q Consensus 453 i~~v~Q~~~l~~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal 528 (1283)
+|+|+|+..||+. ||.||+.++.- ..+.++.++. +.+.++++ |+.......+.+|||||||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~-----A~~lL~~V--GL~~ka~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREK-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHH-----HHHHHHHc--CchhhhhhCccccCcHHHHHHHHHHHH
Confidence 9999999999976 99999998732 1233332221 12344554 666666666789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCCC
Q 000789 529 LKNPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEG 604 (1283)
Q Consensus 529 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~ 604 (1283)
+.+|+++|+|||||||||+...++.+.++++.+ |.|.|+|||.+.+++. ||||+.||+|+|+++|+++++..+|..
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~ 229 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKS 229 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCC
Confidence 999999999999999999999999999999875 6899999999999988 999999999999999999999987543
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-51 Score=414.65 Aligned_cols=219 Identities=32% Similarity=0.506 Sum_probs=196.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCC-CCChHHHhcc
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELP-KFKLSWLRQQ 1117 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~-~~~~~~lR~~ 1117 (1283)
-|+++||+.+|++ ..||+|||++|++||.++|+||||||||||+++|.++.+|++|+|.+||.++. ..+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4899999999974 46999999999999999999999999999999999999999999999998763 3378899999
Q ss_pred eEEEccCCCCC-hhhHHHHHhcCCC--CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHH
Q 000789 1118 MGLVSQEPVLF-NETIRTNIAYGKQ--GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAI 1190 (1283)
Q Consensus 1118 i~~V~Qdp~Lf-~gTIreNl~~g~~--~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlai 1190 (1283)
+|+|+|...|| +.|+.||+.+++. ...+. +.-.+.|+++|+.|.....|. +|||||+||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHH
Confidence 99999999999 5699999988732 12333 334567888899888888775 899999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhcc
Q 000789 1191 ARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKIT 1268 (1283)
Q Consensus 1191 ARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~ 1268 (1283)
||||..+|+++++|||||||||+.-.++.+.++++. .|.|.|+|||.+...++ ||||+.||+|+|+|+|+|+++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999999986 46799999999999998 9999999999999999999999876
Q ss_pred Cch
Q 000789 1269 DGA 1271 (1283)
Q Consensus 1269 ~g~ 1271 (1283)
...
T Consensus 228 ~~~ 230 (240)
T COG1126 228 KSE 230 (240)
T ss_pred CCH
Confidence 543
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-50 Score=426.00 Aligned_cols=220 Identities=39% Similarity=0.607 Sum_probs=191.6
Q ss_pred EEEEEEEEECCCC--CCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHH---HH
Q 000789 375 IELRDVYFRYPAR--PEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLK---WI 449 (1283)
Q Consensus 375 i~~~~v~f~y~~~--~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~ 449 (1283)
|++++|++.|+.. ....+|+||||+|++||++||+|+||||||||++++.++-.|++|+|.+||+|+..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999752 124689999999999999999999999999999999999999999999999999887755 45
Q ss_pred hcccEEEccCCCCCc-ccHHHHHhcCCCCC--CHHH----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000789 450 REKIGLVSQEPILFA-TSLRENIAYGKENA--TDQE----IRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRI 522 (1283)
Q Consensus 450 r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~--~~~~----~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri 522 (1283)
|++||++||++.|++ .||.+|++|+.+-+ +.++ +.+.++.+ |+....+..+.+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV-----------gL~dk~~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV-----------GLSDKADRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc-----------CChhhhccCchhcCcchhhHH
Confidence 789999999999997 69999999975422 2332 33344444 555555666689999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHh
Q 000789 523 AIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELI 599 (1283)
Q Consensus 523 aiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 599 (1283)
+|||||..+|+|||+|||||||||+|.+.|.+.|+++.+ +-|+++|||.++.++. |||+.||++|+|+|+|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999998754 6799999999999998 9999999999999999999999
Q ss_pred cCCCCh
Q 000789 600 KDPEGP 605 (1283)
Q Consensus 600 ~~~~~~ 605 (1283)
.+|...
T Consensus 231 ~~Pk~~ 236 (339)
T COG1135 231 ANPKHA 236 (339)
T ss_pred cCcchH
Confidence 886443
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=424.15 Aligned_cols=220 Identities=35% Similarity=0.557 Sum_probs=193.6
Q ss_pred EEEEEEEEECCCC--CCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCC---hHHH
Q 000789 1040 IELRCVSFKYPTR--PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK---LSWL 1114 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~--~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~---~~~l 1114 (1283)
|++++||+.|+.. +...+|+||||+|++||+.||+|+||+|||||++++.++-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999863 1246999999999999999999999999999999999999999999999999887776 5556
Q ss_pred hcceEEEccCCCCCh-hhHHHHHhcCCC-CCCCHH----HHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHH
Q 000789 1115 RQQMGLVSQEPVLFN-ETIRTNIAYGKQ-GGATEE----EIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRI 1188 (1283)
Q Consensus 1115 R~~i~~V~Qdp~Lf~-gTIreNl~~g~~-~~~sd~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1188 (1283)
|++||+|+|++.|++ .||.+|++|... ...+.+ .+.+.|+.+|+.|...+.| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 789999999999997 899999997521 123444 4566777788777766655 48999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHH
Q 000789 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1189 aiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
+|||||..+|+||++|||||||||+|.+.|.+.|++.- -|-|+++|||.++.+++ |||+.||++|+|+|+|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998763 36799999999999998 9999999999999999999999
Q ss_pred hccCc
Q 000789 1266 KITDG 1270 (1283)
Q Consensus 1266 ~~~~g 1270 (1283)
.++..
T Consensus 231 ~~Pk~ 235 (339)
T COG1135 231 ANPKH 235 (339)
T ss_pred cCcch
Confidence 87644
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=411.92 Aligned_cols=224 Identities=36% Similarity=0.579 Sum_probs=192.3
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+|+|||+.|.+ ..+++|+||+|++||+++++|||||||||++|+|.|+++|++|+|++||+++++++...+|++||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 789999999973 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccc--cccCCCCCCChHHHHHHHHHHHHh
Q 000789 455 LVSQEPILFAT-SLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDT--MAGEHGTQLSGGQKQRIAIARAIL 529 (1283)
Q Consensus 455 ~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t--~~~~~g~~LSgGqkqriaiARal~ 529 (1283)
||-|..-||+. ||.|||++-.. ..+.+++.+- +++.+..+ |++- .....+.+|||||+|||.+||||+
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r-----~~ELl~lv--gL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR-----ADELLDLV--GLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHH-----HHHHHHHh--CCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 99999999975 99999997422 1233333221 12223322 4432 334455799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEeEecChhHHhcCCCChh
Q 000789 530 KNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIR-NADLIAVVHQGKIVEKGTHDELIKDPEGPY 606 (1283)
Q Consensus 530 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~ 606 (1283)
.+|+|+++|||++||||.++..+|+.+.++.+ ++|+|+|||++++.- -+|||.+|++|+|++.++|++++.+|...|
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~F 231 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDF 231 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHH
Confidence 99999999999999999999999999998865 689999999999865 499999999999999999999999875555
Q ss_pred HH
Q 000789 607 TQ 608 (1283)
Q Consensus 607 ~~ 608 (1283)
-+
T Consensus 232 V~ 233 (309)
T COG1125 232 VE 233 (309)
T ss_pred HH
Confidence 43
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-49 Score=439.32 Aligned_cols=237 Identities=25% Similarity=0.481 Sum_probs=219.4
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcc
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREK 452 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 452 (1283)
|.|+++||+++|++. ..++|+|+||+|++||+++|+||||||||||+++|.|+++ ++|+|++||.++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 468999999999642 3469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred cEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000789 453 IGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNP 532 (1283)
Q Consensus 453 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~ 532 (1283)
|+||||++.+|++|+++|+.+..+ .++++++++++.+++++++..+|+|+++.++++|.+||||||||++||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999974332 4678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCChhHHHHHH
Q 000789 533 KILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRL 612 (1283)
Q Consensus 533 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 612 (1283)
+||||||||++||+.+.+.+++.|++..+++|+|+||||++++..||+|++|++|++++.|++++|+++ .+.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhh
Confidence 999999999999999999999999988778999999999999988999999999999999999999986 5667776654
Q ss_pred h
Q 000789 613 Q 613 (1283)
Q Consensus 613 ~ 613 (1283)
.
T Consensus 237 ~ 237 (275)
T cd03289 237 S 237 (275)
T ss_pred c
Confidence 3
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=399.83 Aligned_cols=221 Identities=33% Similarity=0.536 Sum_probs=200.0
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC-----ceEEECCcccCC--CC
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA-----GEVLIDGIDIKK--LQ 445 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~-----G~i~~~g~~~~~--~~ 445 (1283)
..++++|+++.|++ +.+|+|||++|++++++|++||||||||||++++.|..+... |+|.++|+||.+ ++
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 35899999999973 469999999999999999999999999999999999998875 999999999965 57
Q ss_pred HHHHhcccEEEccCCCCCcccHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 000789 446 LKWIREKIGLVSQEPILFATSLRENIAYGKENA------TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519 (1283)
Q Consensus 446 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 519 (1283)
...+|++||+|+|.|.-|+.||+||++||..-. -++.++++++.+.+++-+.. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 889999999999999999999999999984311 13557889999999887654 25567889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
||+||||||.-+|+|||||||||||||.+...|.+.|.++.++-|+|+|||.+....+ +|+..++..|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999988999999999999866 999999999999999999999
Q ss_pred hcCCC
Q 000789 599 IKDPE 603 (1283)
Q Consensus 599 ~~~~~ 603 (1283)
..+|.
T Consensus 236 F~~P~ 240 (253)
T COG1117 236 FTNPK 240 (253)
T ss_pred hcCcc
Confidence 98753
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=448.93 Aligned_cols=226 Identities=28% Similarity=0.467 Sum_probs=200.0
Q ss_pred CcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCcceEEECCccCC--C
Q 000789 1036 VGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLDNIELP--K 1108 (1283)
Q Consensus 1036 ~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~--~ 1108 (1283)
..+.|+|+||+++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++. .
T Consensus 77 ~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 77 HANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred cCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 44689999999999743 3469999999999999999999999999999999999997 57999999999997 4
Q ss_pred CChHHHhcceEEEccCCCCChhhHHHHHhcCCC-CCCCHHHH-----HHHHHHhChHHHHHhCCCCcccccCCCCCCCCh
Q 000789 1109 FKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGATEEEI-----IAATEASNAHNFISALPHGYETNVGERGVQLSG 1182 (1283)
Q Consensus 1109 ~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~sd~ei-----~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1182 (1283)
.+...+|+.++||||+|.+|++|++|||.++.. ...++++. .++++.+++ +.++++.++++|.+|||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALSG 228 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCCH
Confidence 556788999999999999999999999997632 23455554 444555554 44567889999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecCh
Q 000789 1183 GQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSH 1261 (1283)
Q Consensus 1183 GQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~ 1261 (1283)
|||||+|||||++++|+|||||||||+||+++...+++.|+++.+++|+|+|||+++++.. ||||+||++|+|+|.|+|
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999999889999999999999988 999999999999999999
Q ss_pred HHHHhccC
Q 000789 1262 DALMKITD 1269 (1283)
Q Consensus 1262 ~eLl~~~~ 1269 (1283)
+++...+.
T Consensus 309 ~~l~~~~~ 316 (329)
T PRK14257 309 KTIFIHPK 316 (329)
T ss_pred HHHhcCCC
Confidence 99987544
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=433.16 Aligned_cols=199 Identities=29% Similarity=0.408 Sum_probs=164.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|.++||+|+|++.+ .+++++||-|.++++||+|||||+|||||+|++.|...|+.|.|.-.-.. ++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence 599999999998654 68999999999999999999999999999999999999999998654221 23
Q ss_pred EEEcc---CCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHc
Q 000789 1119 GLVSQ---EPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVL 1195 (1283)
Q Consensus 1119 ~~V~Q---dp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll 1195 (1283)
++-.| +-..++.|.-|++..-..+.-+.+++...+.+.|+..-.... ++ .+||+|||.||+.||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~------p~----~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVV------PM----SQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccccc------ch----hhcccccchhHHHHHHHh
Confidence 33334 334567788888864322235678888899999887443333 33 379999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEe-cChH
Q 000789 1196 KNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQ-GSHD 1262 (1283)
Q Consensus 1196 ~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~-Gt~~ 1262 (1283)
++|.||||||||++||.++-..+.++|.++ ..+||+|+|+...|.. +++|++.++|.+... |...
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence 999999999999999999999999999986 6699999999999988 999999999988654 5443
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=391.82 Aligned_cols=221 Identities=32% Similarity=0.502 Sum_probs=199.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCc-----ceEEECCccCCC--CCh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS-----GHVLLDNIELPK--FKL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~-----G~I~idG~di~~--~~~ 1111 (1283)
.++++|+++-|.+ ..+|+|||++|++++.+|++|||||||||++++|.|+.+... |+|.+||+||.+ ++.
T Consensus 7 ~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 5899999999973 469999999999999999999999999999999999999876 999999999965 679
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC-CCC----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQ 1186 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1186 (1283)
-.+|+++|+|+|.|.-|..||+||++||.. ++. -||-+..+|+.|.+||-+.. .+.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence 999999999999999999999999999842 112 23557889999999998753 245567789999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHH
Q 000789 1187 RIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1187 RlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
||||||||.-+|+|||||||||||||.+..+|.+.|.++.++-|+|+|||.+.-... +|+...+-.|+++|+|..+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999989999999999987655 9999999999999999999998
Q ss_pred hccC
Q 000789 1266 KITD 1269 (1283)
Q Consensus 1266 ~~~~ 1269 (1283)
.++.
T Consensus 237 ~~P~ 240 (253)
T COG1117 237 TNPK 240 (253)
T ss_pred cCcc
Confidence 7643
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-48 Score=398.34 Aligned_cols=221 Identities=31% Similarity=0.511 Sum_probs=196.5
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+|+|||++|.+ ..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.|+++++...||++||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 799999999973 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCC-hhhHHHHHhcCCC-CCCCH----HHHHHHHHHhChH--HHHHhCCCCcccccCCCCCCCChhHHHHHHHH
Q 000789 1120 LVSQEPVLF-NETIRTNIAYGKQ-GGATE----EEIIAATEASNAH--NFISALPHGYETNVGERGVQLSGGQKQRIAIA 1191 (1283)
Q Consensus 1120 ~V~Qdp~Lf-~gTIreNl~~g~~-~~~sd----~ei~~al~~a~l~--~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiA 1191 (1283)
||-|..-|| +.||.|||++-+. ...+. +++.+.++.+++. +|..+.|. .|||||+||+.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~-----------eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH-----------ELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch-----------hcCcchhhHHHHH
Confidence 999999999 6799999986421 12333 4456677777775 46666664 8999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhcc
Q 000789 1192 RAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKIT 1268 (1283)
Q Consensus 1192 RAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~ 1268 (1283)
|||..+|+||++|||.+||||-+...+|+-+.++.+ ++|+|+|||+++.... +|||.||++|+|+++|+|+++++++
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999987653 7899999999987655 9999999999999999999999987
Q ss_pred CchhHH
Q 000789 1269 DGAYAS 1274 (1283)
Q Consensus 1269 ~g~y~~ 1274 (1283)
...|-+
T Consensus 228 an~FV~ 233 (309)
T COG1125 228 ANDFVE 233 (309)
T ss_pred cHHHHH
Confidence 766643
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=415.05 Aligned_cols=236 Identities=51% Similarity=0.817 Sum_probs=217.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++||+++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999743 346999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 000789 1120 LVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPK 1199 (1283)
Q Consensus 1120 ~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ 1199 (1283)
|+||++.+|+.|++||+.++.. ..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEcCCchhccchHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999987532 345677888888899999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhccCchhHHHHHH
Q 000789 1200 ILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278 (1283)
Q Consensus 1200 ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~ 1278 (1283)
+|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++++. .+.|..++..
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~~ 236 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQL 236 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHhc
Confidence 99999999999999999999999998778999999999999988999999999999999999999986 7888887753
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=383.87 Aligned_cols=470 Identities=19% Similarity=0.235 Sum_probs=355.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000789 101 LYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLM 180 (1283)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~ 180 (1283)
+++.++..+.+.+.......+++++..++|.++.++++.-|+.-+++- +++.++.++++|+..|. +-...++.+.+..
T Consensus 55 ~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~-~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~ 132 (546)
T COG4615 55 LGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERL-GSARLLAGLTSDVRNIS-FAFSRLPELVQAI 132 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHh-cccchhhhhccccccee-ehHhhhHHHHHHH
Confidence 333333444555556667788999999999999999999999999976 99999999999999998 4455678889999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHH--HHH
Q 000789 181 STFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQ--AIE 258 (1283)
Q Consensus 181 ~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~--~~~ 258 (1283)
+.++++++.+.++|+++.++.++.+.+.++...+...+..+.+...++..+++.+..+..++|-+..+......+ ..+
T Consensus 133 il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~ 212 (546)
T COG4615 133 ILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNN 212 (546)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhh
Confidence 999999999999999998888888888888888888888888899999999999999999999999998754332 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 259 KYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAF 338 (1283)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~ 338 (1283)
.|....+.+++..............+.+++.+....+++|+..... .-+.....++.+.++++..|+.+....++.+
T Consensus 213 ~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~---w~st~~a~tivlvlLflr~pL~s~vgilP~l 289 (546)
T COG4615 213 LYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLG---WASTNVAATIVLVLLFLRTPLLSAVGILPTL 289 (546)
T ss_pred hcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhhHHHHHHHHHHHHhhHHHHHHhhhhHH
Confidence 3333333333322222222112222333334444444444433221 1122233345555666778999998999999
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCcccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHH
Q 000789 339 AGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKST 418 (1283)
Q Consensus 339 ~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKST 418 (1283)
.+|.+|++||.++-..++..+ ... ....+. -..|+++||.|+|+... --+..||++|++||.|-|+|.|||||||
T Consensus 290 ~~AqvA~~kiakle~~~~~a~-~~~-~q~~p~-~~~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~NGsGKST 364 (546)
T COG4615 290 LTAQVAFNKIAKLELAPYKAD-FPR-PQAFPD-WKTLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGGNGSGKST 364 (546)
T ss_pred HHHHHHHHHHHHhhcCCcccc-CCC-CCcCCc-ccceeeeeeeeccCccc--ceecceeeEEecCcEEEEECCCCCcHHH
Confidence 999999999988654332221 111 111222 24699999999997432 3578899999999999999999999999
Q ss_pred HHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccEEEccCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHH
Q 000789 419 VISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKEN-ATDQEIRTAIELANAAKFID 497 (1283)
Q Consensus 419 l~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~ 497 (1283)
++++|.|+|+|++|+|++||.+++.-+++..|+-++-|+-|.|||+.++ |.+. ++++.+..-++...+.....
T Consensus 365 ~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kts 438 (546)
T COG4615 365 LAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKTS 438 (546)
T ss_pred HHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999999999999998765 4333 56666665555544433221
Q ss_pred hCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhh
Q 000789 498 KLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTI 575 (1283)
Q Consensus 498 ~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~ 575 (1283)
+-+|-= ....||-|||.|+|+--|++-+.||++|||=-+--||.=++.+.+.+.-+. .|||++.||||-...
T Consensus 439 -l~d~~f-----s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF 512 (546)
T COG4615 439 -LNDGRF-----SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF 512 (546)
T ss_pred -ccCCcc-----cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh
Confidence 111111 124799999999999999999999999999999999999999988776543 489999999999999
Q ss_pred hccCEEEEEeCCEEeEe
Q 000789 576 RNADLIAVVHQGKIVEK 592 (1283)
Q Consensus 576 ~~~d~i~vl~~G~i~~~ 592 (1283)
..|||++.|++|+++|.
T Consensus 513 ~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 513 IHADRLLEMRNGQLSEL 529 (546)
T ss_pred hhHHHHHHHhcCceeec
Confidence 99999999999999975
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-46 Score=417.36 Aligned_cols=241 Identities=31% Similarity=0.563 Sum_probs=223.3
Q ss_pred CcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHh
Q 000789 1036 VGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLR 1115 (1283)
Q Consensus 1036 ~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR 1115 (1283)
..|.|+++|++++|+.. ..++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 46789999999999743 24699999999999999999999999999999999999999999999999999988888899
Q ss_pred cceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHc
Q 000789 1116 QQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVL 1195 (1283)
Q Consensus 1116 ~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll 1195 (1283)
+.++||+|+|.+|++|++||+.+.. ...+++++++++.+++.+++..+|.|+++.+++.+.+||||||||++||||++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999997642 23566788899999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhccCchhHHH
Q 000789 1196 KNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275 (1283)
Q Consensus 1196 ~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L 1275 (1283)
++|++|||||||++||++++..+.+.+++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+..++.|+.+
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 99999999999999999999999999998777899999999999999999999999999999999999998767889888
Q ss_pred HHHh
Q 000789 1276 VALH 1279 (1283)
Q Consensus 1276 ~~~~ 1279 (1283)
+..+
T Consensus 253 ~~~~ 256 (257)
T cd03288 253 VRTD 256 (257)
T ss_pred Hhcc
Confidence 7654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=455.49 Aligned_cols=200 Identities=25% Similarity=0.376 Sum_probs=168.8
Q ss_pred CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC--CCcceEEECCccCCCCChHHHhcceEEEccCC-CCChh
Q 000789 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD--PDSGHVLLDNIELPKFKLSWLRQQMGLVSQEP-VLFNE 1130 (1283)
Q Consensus 1054 ~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp-~Lf~g 1130 (1283)
....|+|||=-++||-.+|++|+||||||||++.|++--. ..+|+|+|||.+..+ +..++.+|||.|++ ++-.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 3468999999999999999999999999999999999754 357999999998765 68899999999977 56677
Q ss_pred hHHHHHhcCC----CCCCCHHH----HHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCC-CEE
Q 000789 1131 TIRTNIAYGK----QGGATEEE----IIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNP-KIL 1201 (1283)
Q Consensus 1131 TIreNl~~g~----~~~~sd~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p-~IL 1201 (1283)
||||-|.|.. +.+.+++| +.++.+..++.++ -|..||.-|..||..||.||.||=-|+.|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999997651 23455544 4455555555444 456789989999999999999999999999 999
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchH--HhhcCEEEEEe-CCEEEEecChHH
Q 000789 1202 LLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTT--IKNADIIAVVK-NGVIAEQGSHDA 1263 (1283)
Q Consensus 1202 iLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~t--i~~~D~I~vl~-~G~Ive~Gt~~e 1263 (1283)
.||||||+||+++...|.+.++++. .|+||++.-|.+|. .+..|+++.|+ +|+.+.+|+..+
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999999999999999999975 68999999999985 36699999995 689999987543
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=429.91 Aligned_cols=225 Identities=29% Similarity=0.511 Sum_probs=196.7
Q ss_pred ccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEECCcccCC--
Q 000789 371 IEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD-----PDAGEVLIDGIDIKK-- 443 (1283)
Q Consensus 371 ~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~-- 443 (1283)
..+.|+++|++|+|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 77 ~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 77 HANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred cCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 45689999999999642 3469999999999999999999999999999999999996 579999999999974
Q ss_pred CCHHHHhcccEEEccCCCCCcccHHHHHhcCCC--CCCHHHH-----HHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 000789 444 LQLKWIREKIGLVSQEPILFATSLRENIAYGKE--NATDQEI-----RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSG 516 (1283)
Q Consensus 444 ~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~~~~~~-----~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 516 (1283)
.+...+|+.++||||+|++|++|++|||.|+.. ..++++. .++++.++ +++++++.++++|.+|||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNALSG 228 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccCCH
Confidence 455678899999999999999999999998642 1233332 33344433 344667889999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecCh
Q 000789 517 GQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTH 595 (1283)
Q Consensus 517 GqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~ 595 (1283)
|||||++||||++++|+|||||||||+||+++.+.+++.|+++.+++|+|+|||+++++.. ||+|+||++|+|++.|++
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998888999999999999987 999999999999999999
Q ss_pred hHHhcCCC
Q 000789 596 DELIKDPE 603 (1283)
Q Consensus 596 ~~l~~~~~ 603 (1283)
+++...+.
T Consensus 309 ~~l~~~~~ 316 (329)
T PRK14257 309 KTIFIHPK 316 (329)
T ss_pred HHHhcCCC
Confidence 99987643
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-46 Score=384.11 Aligned_cols=222 Identities=36% Similarity=0.578 Sum_probs=190.3
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHH---HH
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLK---WI 449 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~ 449 (1283)
..|++++|+|+|++ +.+++||||+|++||+++|+||||||||||+++|.|+..|++|+|.++|+|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 36999999999964 4699999999999999999999999999999999999999999999999999888754 56
Q ss_pred hcccEEEccCCCCCcc-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCcccc-ccCCCCCCChHHHHHHHH
Q 000789 450 REKIGLVSQEPILFAT-SLRENIAYGKEN---ATDQEIRTAIELANAAKFIDKLPKGLDTM-AGEHGTQLSGGQKQRIAI 524 (1283)
Q Consensus 450 r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~lp~g~~t~-~~~~g~~LSgGqkqriai 524 (1283)
|+++|+++|...||+. ||+||+.|...+ .+++.+++.+. ..++.. |+... ....+++||||++.|+||
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~-----~KL~~V--GL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVL-----MKLELV--GLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHH-----HHHHhc--CCChhhhhhCchhhcchHHHHHHH
Confidence 8999999999999987 999999996433 23444433221 112222 55444 233467999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 525 ARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 525 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|||+..||+|+++|||||+|||.+...+.+.|+++.+ +.|+|+|||+++++.. ||+|+++.+|+|+..|+++|+.+.
T Consensus 157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999998865 6899999999999876 999999999999999999999987
Q ss_pred CCC
Q 000789 602 PEG 604 (1283)
Q Consensus 602 ~~~ 604 (1283)
.+.
T Consensus 237 d~P 239 (263)
T COG1127 237 DDP 239 (263)
T ss_pred CCH
Confidence 443
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=408.77 Aligned_cols=234 Identities=47% Similarity=0.796 Sum_probs=214.6
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++||+++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999642 246999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000789 455 LVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKI 534 (1283)
Q Consensus 455 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~i 534 (1283)
|++|++++|+.|+.||+.++.+....+++.++++..++.++++.+|.|+++..+..+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999987654455667777888888999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCChhHHHH
Q 000789 535 LLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610 (1283)
Q Consensus 535 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 610 (1283)
|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|++++++.+ .+.|..++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHH
Confidence 9999999999999999999999998778999999999999988999999999999999999999876 66776654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-46 Score=414.72 Aligned_cols=218 Identities=33% Similarity=0.577 Sum_probs=194.5
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++||++.|++. .+++|+||+|++||+++|+|||||||||+|++|+|+.+|++|+|.|||.+++++++.. +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999742 2899999999999999999999999999999999999999999999999999998875 689
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000789 454 GLVSQEPILFAT-SLRENIAYGKENA------TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526 (1283)
Q Consensus 454 ~~v~Q~~~l~~~-ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiAR 526 (1283)
|+|||+..||+. ||+|||+|+.... .++++.++++..++.+.+++.| .+|||||||||||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 999999999976 9999999986532 2456677777777666666655 699999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCC
Q 000789 527 AILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPE 603 (1283)
Q Consensus 527 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~ 603 (1283)
||+++|+++|||||+|+||++.+..+...|+++.+ +.|+|+||||..++.. ||||+||++|+|.+.|++.|+..+|.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999999998765 5799999999998865 99999999999999999999998865
Q ss_pred ChhH
Q 000789 604 GPYT 607 (1283)
Q Consensus 604 ~~~~ 607 (1283)
..+-
T Consensus 227 n~fV 230 (338)
T COG3839 227 NLFV 230 (338)
T ss_pred chhh
Confidence 5443
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=361.42 Aligned_cols=209 Identities=34% Similarity=0.585 Sum_probs=188.6
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|.+++|.|+|...+ =.++++|++||++||+||||||||||+|+|+||..|.+|+|.|+|+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56789999996422 368999999999999999999999999999999999999999999999877665 35699
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC-C-----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000789 455 LVSQEPILFAT-SLRENIAYGKE-N-----ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARA 527 (1283)
Q Consensus 455 ~v~Q~~~l~~~-ti~~ni~~~~~-~-----~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARa 527 (1283)
+++||..||.- ||++||.+|.. . ...+.+..++..+++.+|.+++|. +||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 99999999976 99999999953 2 134678899999999999999985 899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 528 ILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 528 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|+++-+||+||||+|+|||.-+.++...+.++.. +.|+++|||.++.++. +|+++++++|||.++|+.++++..
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 9999999999999999999999999999988864 5799999999999876 999999999999999999999865
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=398.28 Aligned_cols=214 Identities=34% Similarity=0.553 Sum_probs=190.5
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.++++|++|+|++ +++|+|+||++++||+++|+||||||||||+|+|+|+++|.+|+|++||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999973 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCC-CCcccHHHHHhcCCCC-------CC---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000789 454 GLVSQEPI-LFATSLRENIAYGKEN-------AT---DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRI 522 (1283)
Q Consensus 454 ~~v~Q~~~-l~~~ti~~ni~~~~~~-------~~---~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri 522 (1283)
|||||++. -|.-||+|-+.+|+.. .+ .+.+.++++..++.++..+ .-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHH
Confidence 99999975 4566999999999632 12 2246667777766665443 4468999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEeEecChhHHh
Q 000789 523 AIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIR-NADLIAVVHQGKIVEKGTHDELI 599 (1283)
Q Consensus 523 aiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~ 599 (1283)
.|||||+++|+||+||||||+||.....++++.++++.+ ++|+|+|.|+++... .||++++|++|+|+.+|+++|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999999999999999999999863 689999999999864 59999999999999999999988
Q ss_pred cC
Q 000789 600 KD 601 (1283)
Q Consensus 600 ~~ 601 (1283)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-45 Score=409.65 Aligned_cols=210 Identities=28% Similarity=0.388 Sum_probs=169.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.+++.+|+|.|+.. +++.+++++++++.-+++++||++|+||||+++++.+-..|..|.+.+.+ |.+|
T Consensus 362 ~l~i~~V~f~y~p~-~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri 429 (582)
T KOG0062|consen 362 NLRISYVAFEYTPS-EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI 429 (582)
T ss_pred eeEEEeeeccCCCc-chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence 69999999999754 23799999999999999999999999999999999999999999998876 7789
Q ss_pred EEEccCCCC-ChhhHHHHHhc-CCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHcc
Q 000789 1119 GLVSQEPVL-FNETIRTNIAY-GKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLK 1196 (1283)
Q Consensus 1119 ~~V~Qdp~L-f~gTIreNl~~-g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~ 1196 (1283)
+|-.|.-+= ++-.+-+=-.+ ...+..+++|+.+.|...|+..-+...+ -..||||||=|+++|-....
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhcC
Confidence 999997653 33332211110 0123458999999998877654443221 24699999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEe-cChHHHHhccCchhHH
Q 000789 1197 NPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQ-GSHDALMKITDGAYAS 1274 (1283)
Q Consensus 1197 ~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~-Gt~~eLl~~~~g~y~~ 1274 (1283)
+|.+|+|||||.+||.++-..+-++|+.. +.-||+|||+.+.+.. |+.++|.++|+|.-. |+- ..|.+
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~--------~~yKk 569 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGI--------DKYKK 569 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccH--------HHHHH
Confidence 99999999999999999999999999875 5689999999999988 999999999999763 221 13666
Q ss_pred HHHHhh
Q 000789 1275 LVALHV 1280 (1283)
Q Consensus 1275 L~~~~~ 1280 (1283)
+...+.
T Consensus 570 l~~~e~ 575 (582)
T KOG0062|consen 570 LLGAEL 575 (582)
T ss_pred HHHHHH
Confidence 665553
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=366.77 Aligned_cols=207 Identities=30% Similarity=0.524 Sum_probs=185.4
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCC---HHHHhc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ---LKWIRE 451 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~r~ 451 (1283)
|+|+||++.|++. .++|+||||+|++||++-|+||||||||||+|+|.+...|+.|+|.++|.|+..+. ...+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7999999999864 56999999999999999999999999999999999999999999999999998765 456899
Q ss_pred ccEEEccCCCCCcc-cHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000789 452 KIGLVSQEPILFAT-SLRENIAYGKEN------ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAI 524 (1283)
Q Consensus 452 ~i~~v~Q~~~l~~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriai 524 (1283)
+||+|+||.-|... ||+||++|...- .-.+++.++++.+++.+-...+|. +|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 99999999988765 999999996431 123567788888888888888874 899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecC
Q 000789 525 ARAILKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGT 594 (1283)
Q Consensus 525 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~ 594 (1283)
|||++.+|++||-||||.+|||++...|++.+.++. .|.||++.||+.+.+.. --|++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999985 47899999999999987 67999999999987543
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=402.18 Aligned_cols=235 Identities=52% Similarity=0.831 Sum_probs=217.5
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++|++++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999632 35999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 000789 1120 LVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPK 1199 (1283)
Q Consensus 1120 ~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ 1199 (1283)
|+||++.+|++|++||+.++.. ..+++++.++++.+++.+++..+|.|+++.+.....+||||||||++|||||+++|+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EECCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999988633 456777888899999999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhccCchhHHHHHH
Q 000789 1200 ILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278 (1283)
Q Consensus 1200 ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~ 1278 (1283)
+|||||||++||+++...+.+.|.+..++.|+|++||+++.+..||++++|++|++++.|+++++.+. .+.|+.++..
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~~ 235 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWKA 235 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHhc
Confidence 99999999999999999999999988668899999999999988999999999999999999999885 7778777754
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-45 Score=402.49 Aligned_cols=233 Identities=59% Similarity=0.952 Sum_probs=214.3
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++|++++|++. ..++++|+||++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999743 236999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 000789 1120 LVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPK 1199 (1283)
Q Consensus 1120 ~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ 1199 (1283)
|+||++.+|+.|++||+.++.. ..+.+++.+.++..++.++++.+|.|+++.++.....||||||||++|||||+++|+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EeCCCCeeccccHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999988633 345677778888889999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhccCchhHHH
Q 000789 1200 ILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275 (1283)
Q Consensus 1200 ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L 1275 (1283)
+|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+++++... .+.|+.+
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 233 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhhh
Confidence 99999999999999999999999998788999999999999988999999999999999999999875 6666543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-46 Score=416.06 Aligned_cols=219 Identities=35% Similarity=0.589 Sum_probs=194.0
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcc
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREK 452 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 452 (1283)
..|+++||+++|+ +..+++|+||+|++||+++++|||||||||++++|+||.+|++|+|.+||+++.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3599999999997 35799999999999999999999999999999999999999999999999999998876 578
Q ss_pred cEEEccCCCCCcc-cHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000789 453 IGLVSQEPILFAT-SLRENIAYGKEN---ATD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAI 524 (1283)
Q Consensus 453 i~~v~Q~~~l~~~-ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriai 524 (1283)
||+|||+..||+. ||+|||+||... ..+ +++.++++.+++.++-.+.| .+|||||+|||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHH
Confidence 9999999999975 999999999751 122 35667777777766655554 6999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEeEecChhHHhcC
Q 000789 525 ARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIR-NADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 525 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
||||..+|++||||||.||||.+-+..++..++++.+ +.|.|+|||+-++.- -+|||+||++|+|...|+++|+...
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 9999999999999999999999999999999988754 689999999999865 5999999999999999999999988
Q ss_pred CCChhH
Q 000789 602 PEGPYT 607 (1283)
Q Consensus 602 ~~~~~~ 607 (1283)
|...|-
T Consensus 228 P~~~fV 233 (352)
T COG3842 228 PATRFV 233 (352)
T ss_pred cchHHH
Confidence 654443
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=405.30 Aligned_cols=240 Identities=35% Similarity=0.604 Sum_probs=218.8
Q ss_pred CccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHH
Q 000789 370 KIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWI 449 (1283)
Q Consensus 370 ~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~ 449 (1283)
...+.|+++|++++|++. +..+|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 356789999999999742 2469999999999999999999999999999999999999999999999999988888888
Q ss_pred hcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 000789 450 REKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAIL 529 (1283)
Q Consensus 450 r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~ 529 (1283)
++.|+||+|++.+|++|++||+.+... ...+++.++.+..++.++++.+|.|+++.+++.+.+||||||||++|||||+
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999976432 2455677888888999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCChhHHH
Q 000789 530 KNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQL 609 (1283)
Q Consensus 530 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 609 (1283)
++|++|||||||++||+++++.+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+..++.|.++
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 99999999999999999999999999998877899999999999998899999999999999999999987655667766
Q ss_pred HH
Q 000789 610 VR 611 (1283)
Q Consensus 610 ~~ 611 (1283)
+.
T Consensus 253 ~~ 254 (257)
T cd03288 253 VR 254 (257)
T ss_pred Hh
Confidence 54
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=397.99 Aligned_cols=220 Identities=37% Similarity=0.618 Sum_probs=206.6
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcc
Q 000789 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQ 1117 (1283)
Q Consensus 1038 g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1117 (1283)
|.|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999743 2469999999999999999999999999999999999999999999999999988888889999
Q ss_pred eEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccC
Q 000789 1118 MGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKN 1197 (1283)
Q Consensus 1118 i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~ 1197 (1283)
++|+||+|.+|++|++||+.+.. ..+.+++.++++..++.+++..+|.|+++.+++.+.+||||||||++|||||+++
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998642 3567889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecC
Q 000789 1198 PKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGS 1260 (1283)
Q Consensus 1198 p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt 1260 (1283)
|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999999999999999877899999999999999999999999999999886
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=401.16 Aligned_cols=236 Identities=66% Similarity=1.048 Sum_probs=214.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++|++++|+...+.++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997532346999999999999999999999999999999999999999999999999998888778888999
Q ss_pred EEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 000789 1120 LVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPK 1199 (1283)
Q Consensus 1120 ~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ 1199 (1283)
|+||++.+|+.|++||+.++.. ....+++.+.++..++.+++..+|.|+++.+.....+||||||||++||||++.+|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EECCchhhhhhhHHHHhhccCC-CCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999987632 345667778888889999999999999999998899999999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhccCchhHHHHH
Q 000789 1200 ILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVA 1277 (1283)
Q Consensus 1200 ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~ 1277 (1283)
+|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+. .+.++.++.
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 236 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLVK 236 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHHhh
Confidence 99999999999999999999999987778999999999999989999999999999999999999875 666666554
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-45 Score=418.39 Aligned_cols=222 Identities=31% Similarity=0.501 Sum_probs=191.9
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHH---Hh
Q 000789 1040 IELRCVSFKYPTRP-DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW---LR 1115 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---lR 1115 (1283)
|+++||+++|+... ..++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997421 246999999999999999999999999999999999999999999999999998887544 58
Q ss_pred cceEEEccCCCCCh-hhHHHHHhcCCC-CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHH
Q 000789 1116 QQMGLVSQEPVLFN-ETIRTNIAYGKQ-GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIA 1189 (1283)
Q Consensus 1116 ~~i~~V~Qdp~Lf~-gTIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1189 (1283)
++|+||||++.+|. .|++||+.++.. ...+. +++.++++.+++.++....| .+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999995 799999986421 12232 34667788887776654443 489999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHh
Q 000789 1190 IARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1190 iARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1266 (1283)
|||||+.+|+|||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|+|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999999754 7899999999999976 99999999999999999999987
Q ss_pred ccCchh
Q 000789 1267 ITDGAY 1272 (1283)
Q Consensus 1267 ~~~g~y 1272 (1283)
.+...+
T Consensus 231 ~p~~~~ 236 (343)
T TIGR02314 231 HPKTPL 236 (343)
T ss_pred CCCcHH
Confidence 544433
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=377.71 Aligned_cols=216 Identities=35% Similarity=0.566 Sum_probs=187.7
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCC---HHHHh
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ---LKWIR 450 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~r 450 (1283)
.|+++||+..||+ ++.+|+||||+|++||++||+||||||||||++.|.|+.+|++|+|.++|.++..+. ...+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 357999999999999999999999999999999999999999999999999998776 45678
Q ss_pred cccEEEccCCCCCcc-cHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 000789 451 EKIGLVSQEPILFAT-SLRENIAYGKENA-----------TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQ 518 (1283)
Q Consensus 451 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 518 (1283)
++|||++|++.|.+. ||.+|+..|+-.. +.++-. .+.+-++++ |+....-.+..+|||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~------~Al~aLerv--gi~~~A~qra~~LSGGQ 152 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKA------QALDALERV--GILDKAYQRASTLSGGQ 152 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHH------HHHHHHHHc--CcHHHHHHHhccCCcch
Confidence 899999999999876 9999999886432 223222 222334444 55555566778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecCh
Q 000789 519 KQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTH 595 (1283)
Q Consensus 519 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~ 595 (1283)
+|||+|||||+++|+|+|-|||+|+|||.+.+.+++.|+++. .+.|+|+.-|.++.+++ ||||+-|++|+|+.+|+.
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 999999999999999999999999999999999999999875 46899999999999876 999999999999999999
Q ss_pred hHHh
Q 000789 596 DELI 599 (1283)
Q Consensus 596 ~~l~ 599 (1283)
+|+-
T Consensus 233 ~el~ 236 (258)
T COG3638 233 SELT 236 (258)
T ss_pred hhhh
Confidence 9863
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=384.84 Aligned_cols=198 Identities=35% Similarity=0.558 Sum_probs=170.0
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.+++++|+++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4889999999974 4699999999999999999999999999999999999999999999999988432 3579
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCCCC--CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000789 454 GLVSQEPILFA-TSLRENIAYGKENA--TD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526 (1283)
Q Consensus 454 ~~v~Q~~~l~~-~ti~~ni~~~~~~~--~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiAR 526 (1283)
+||+|++.||+ -||+||+.++.+.. +. +.+.+.++.+ |+...-+..+.+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~V-----------gL~~~~~~~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELV-----------GLAGFEDKYPHQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHc-----------CCcchhhcCccccChHHHHHHHHHH
Confidence 99999999997 69999999986532 11 2344444444 4444445555799999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeC--CEEe
Q 000789 527 AILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQ--GKIV 590 (1283)
Q Consensus 527 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~--G~i~ 590 (1283)
||+.+|+||+||||++|||+.|+..+++.+.++.+ ++|+++|||++++.-. +|||+||.+ |+|.
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999999999999999998754 5899999999999765 999999999 4553
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=393.26 Aligned_cols=215 Identities=32% Similarity=0.493 Sum_probs=193.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.++++|++|+|++ .++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|++||.++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3789999999974 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCC-CCChhhHHHHHhcCCCC------CCC--H-HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHH
Q 000789 1119 GLVSQEP-VLFNETIRTNIAYGKQG------GAT--E-EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRI 1188 (1283)
Q Consensus 1119 ~~V~Qdp-~Lf~gTIreNl~~g~~~------~~s--d-~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1188 (1283)
+||||++ .-|.-||+|=+.+|+.+ ..+ | +.+.+|++..++.++..+. + ..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-------~----~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-------V----DELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-------c----cccChhHHHHH
Confidence 9999996 55678999999988543 112 2 3577889999998886442 2 36999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHH-hhcCEEEEEeCCEEEEecChHHHH
Q 000789 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTI-KNADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1189 aiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti-~~~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
.|||||.++|+||+||||||+||.....+|++.++++. +++|+|+|.|+++.. +.||++++|++|+++.+|+|+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999986 369999999999876 559999999999999999999988
Q ss_pred hc
Q 000789 1266 KI 1267 (1283)
Q Consensus 1266 ~~ 1267 (1283)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 63
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-45 Score=377.90 Aligned_cols=227 Identities=33% Similarity=0.494 Sum_probs=191.2
Q ss_pred cEEEEEEEEECCCCCC-cccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCC-ChHHHhc
Q 000789 1039 AIELRCVSFKYPTRPD-VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF-KLSWLRQ 1116 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~-~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~-~~~~lR~ 1116 (1283)
.++++|+++.|+.+.. .++|+||||+|.+||++||||+||||||||.++|.|+.+|++|+|.+||.++... .....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 4899999999985421 1599999999999999999999999999999999999999999999999876543 3446788
Q ss_pred ceEEEccCCCC---ChhhHHHHHhcCC-CC--CCCHHHHHHHHHHhChHH-HHHhCCCCcccccCCCCCCCChhHHHHHH
Q 000789 1117 QMGLVSQEPVL---FNETIRTNIAYGK-QG--GATEEEIIAATEASNAHN-FISALPHGYETNVGERGVQLSGGQKQRIA 1189 (1283)
Q Consensus 1117 ~i~~V~Qdp~L---f~gTIreNl~~g~-~~--~~sd~ei~~al~~a~l~~-~I~~lp~Gldt~vge~G~~LSgGQrQRla 1189 (1283)
.+.+|+|||.- -.-||++-|.=+. .+ +-...+++++++.+++.+ |..+.|. .||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~-----------eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPH-----------ELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCch-----------hcChhHHHHHH
Confidence 99999999952 2346666664111 11 124566999999999864 5555554 79999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCc--eEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHh
Q 000789 1190 IARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR--TTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1190 iARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~--TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1266 (1283)
|||||.-+|++||||||||+||.-..+.|++.+.++.+++ |.|+|||+++.+.. ||||+||++|+++|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999999887654 99999999999988 99999999999999999999988
Q ss_pred ccCchhHHHH
Q 000789 1267 ITDGAYASLV 1276 (1283)
Q Consensus 1267 ~~~g~y~~L~ 1276 (1283)
.+...|.+..
T Consensus 232 ~~~h~ytr~L 241 (252)
T COG1124 232 HPSHPYTREL 241 (252)
T ss_pred CCccHHHHHH
Confidence 6556676544
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=397.44 Aligned_cols=227 Identities=48% Similarity=0.827 Sum_probs=210.9
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcc
Q 000789 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQ 1117 (1283)
Q Consensus 1038 g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1117 (1283)
+.|+++|++++|+.. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 358999999999732 359999999999999999999999999999999999999999999999999988888889999
Q ss_pred eEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccC
Q 000789 1118 MGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKN 1197 (1283)
Q Consensus 1118 i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~ 1197 (1283)
++|+||++.+|++|++||+.++.. ...++++.++++..++.++++.+|.|+++.++....+||||||||++|||||+++
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999987632 3456778888999999999999999999999998999999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhc
Q 000789 1198 PKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1198 p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 9999999999999999999999999998778999999999999988999999999999999999988764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=382.30 Aligned_cols=210 Identities=36% Similarity=0.543 Sum_probs=173.5
Q ss_pred EEEEEEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHH---H-
Q 000789 375 IELRDVYFRYPARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW---I- 449 (1283)
Q Consensus 375 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~- 449 (1283)
++++||++.|.... ..++|+++||+|++||++||+||||||||||+++|.|+..|++|+|.++|+|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 246999999999999999999999999999999999999999999999999999887533 3
Q ss_pred hcccEEEccCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcccccc-CCCCCCChHHHHHHHHH
Q 000789 450 REKIGLVSQEPILFAT-SLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAG-EHGTQLSGGQKQRIAIA 525 (1283)
Q Consensus 450 r~~i~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~-~~g~~LSgGqkqriaiA 525 (1283)
|++||||+|+..|++. |++|||.++.. .....+..+ .+.+..+.+ |+..... ..+.+||||||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~-----~~~~l~~~l--gl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR-----AAEELLEVL--GLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHH-----HHHHHHHhc--CChhhhccCCchhcCHHHHHHHHHH
Confidence 4679999999999876 99999996321 111111111 112223333 5554333 56789999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEeE
Q 000789 526 RAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRNADLIAVVHQGKIVE 591 (1283)
Q Consensus 526 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~ 591 (1283)
|||+.+|+|++.||||++||.++.+.|.+.+.++.+ ++|+|+|||+......|||++.|.+|++..
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999853 689999999999999999999999999543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-45 Score=407.53 Aligned_cols=218 Identities=29% Similarity=0.503 Sum_probs=196.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|++. .+++|+||+|+.||.++|+|||||||||++++|+||.+|++|+|.|||.|+++++++. +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999743 2899999999999999999999999999999999999999999999999999999875 899
Q ss_pred EEEccCCCCCh-hhHHHHHhcCCCC-----CCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHH
Q 000789 1119 GLVSQEPVLFN-ETIRTNIAYGKQG-----GATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~-gTIreNl~~g~~~-----~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiAR 1192 (1283)
++|+|++.||. .||+|||+|+... +--++++.++++..++.+.+++.|. +||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHH
Confidence 99999999995 5999999997431 1235678889999999998888774 89999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhccC
Q 000789 1193 AVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITD 1269 (1283)
Q Consensus 1193 All~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~~ 1269 (1283)
||+++|++++||||.|+||++....+...|+++.+ +.|+|.|||+...+.. +|||+||.+|+|.+.|+|.|+.+++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999999988653 5799999999987766 99999999999999999999998877
Q ss_pred chh
Q 000789 1270 GAY 1272 (1283)
Q Consensus 1270 g~y 1272 (1283)
..|
T Consensus 227 n~f 229 (338)
T COG3839 227 NLF 229 (338)
T ss_pred chh
Confidence 665
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-45 Score=377.69 Aligned_cols=225 Identities=33% Similarity=0.555 Sum_probs=187.3
Q ss_pred cEEEEEEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCC-CHHHHhc
Q 000789 374 EIELRDVYFRYPARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL-QLKWIRE 451 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~-~~~~~r~ 451 (1283)
.++++|+++.|+... ..++|+||||+|.+||++||||+||||||||.++|+|+.+|++|+|.++|.++... ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999997432 11499999999999999999999999999999999999999999999999877554 3446778
Q ss_pred ccEEEccCCC--CCc-ccHHHHHhcCCC----CCCHHHHHHHHHHhcHH-HHHHhCCCCccccccCCCCCCChHHHHHHH
Q 000789 452 KIGLVSQEPI--LFA-TSLRENIAYGKE----NATDQEIRTAIELANAA-KFIDKLPKGLDTMAGEHGTQLSGGQKQRIA 523 (1283)
Q Consensus 452 ~i~~v~Q~~~--l~~-~ti~~ni~~~~~----~~~~~~~~~~~~~~~~~-~~i~~lp~g~~t~~~~~g~~LSgGqkqria 523 (1283)
.|-+|||||. |-+ -||++-|.-+.. +....++.++++.+++. +|..+ ++.+||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R-----------~P~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDR-----------RPHELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhc-----------CchhcChhHHHHHH
Confidence 9999999996 333 377776654322 12234466666666553 24444 45689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhc
Q 000789 524 IARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600 (1283)
Q Consensus 524 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~--t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 600 (1283)
|||||..+|++||||||||+||+.....|.+.+.++.+++ |.|+|||+++.+.+ ||||+||++|+|+|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999999987754 99999999999988 99999999999999999999988
Q ss_pred CCCChhHHH
Q 000789 601 DPEGPYTQL 609 (1283)
Q Consensus 601 ~~~~~~~~~ 609 (1283)
.+...|.+.
T Consensus 232 ~~~h~ytr~ 240 (252)
T COG1124 232 HPSHPYTRE 240 (252)
T ss_pred CCccHHHHH
Confidence 766666654
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=354.85 Aligned_cols=210 Identities=34% Similarity=0.538 Sum_probs=190.3
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|.+++|.|+|...+ =.++++|++||+|||+||||||||||++++.||..|.+|+|.|||+|....++. ++=++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56889999997543 268999999999999999999999999999999999999999999999887764 56799
Q ss_pred EEccCCCCCh-hhHHHHHhcCCCCC-----CCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1120 LVSQEPVLFN-ETIRTNIAYGKQGG-----ATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qdp~Lf~-gTIreNl~~g~~~~-----~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
+++||..||. -||++|+.+|..+. ...+.+..++.++|+.+|..+||. .||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 9999999995 59999999885442 234678899999999999999996 799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
|+|+-+||+||||.|+|||.-..++...+.++. ++.|+++|||.++.++. +|+++++++|||+++|..+++++.
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999999998876 46799999999998876 999999999999999999999986
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=398.10 Aligned_cols=231 Identities=56% Similarity=0.905 Sum_probs=211.3
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999743 236999999999999999999999999999999999999999999999999988777777888999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000789 455 LVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKI 534 (1283)
Q Consensus 455 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~i 534 (1283)
|++|++.+|+.|++||+.++.+....+++.+.++..++.++++.+|.|+++..+..+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999997665556677777888889999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCChhH
Q 000789 535 LLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYT 607 (1283)
Q Consensus 535 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 607 (1283)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++... .+.|+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~ 231 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYA 231 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchh
Confidence 9999999999999999999999998778999999999999988999999999999999999998765 44443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=396.15 Aligned_cols=227 Identities=50% Similarity=0.846 Sum_probs=210.3
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcc
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREK 452 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 452 (1283)
+.|+++|++++|++. .++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 358999999999632 359999999999999999999999999999999999999999999999999988787788889
Q ss_pred cEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000789 453 IGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNP 532 (1283)
Q Consensus 453 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~ 532 (1283)
++|++|++.+|++|++||+.++.+....+++.++++..++.++++.+|.|+++.++....+||||||||++|||||+.+|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999886655567778888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcC
Q 000789 533 KILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 533 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
++|||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+..||+|++|++|++++.|+.+++..+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999998778999999999999988999999999999999998887654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=397.68 Aligned_cols=233 Identities=50% Similarity=0.804 Sum_probs=213.0
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++|++++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999632 35999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000789 455 LVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKI 534 (1283)
Q Consensus 455 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~i 534 (1283)
|++|++.+|+.|++||+.++.+..+.+++.++++..++.+++..+|.|+++.+..++.+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998665566677778888899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCChhHHHH
Q 000789 535 LLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610 (1283)
Q Consensus 535 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 610 (1283)
|||||||++||+++...+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++... ...|..++
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~ 233 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMW 233 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHH
Confidence 9999999999999999999999988768899999999999988999999999999999999998765 44554443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-44 Score=397.76 Aligned_cols=227 Identities=65% Similarity=1.058 Sum_probs=208.1
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++|+++.|++..+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....+++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997533346999999999999999999999999999999999999999999999999988777777778899
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000789 455 LVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKI 534 (1283)
Q Consensus 455 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~i 534 (1283)
|++|++.+|+.|++||+.++.+....+++.+.++..++.+++..+|.|+++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655555666777777888899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcC
Q 000789 535 LLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 535 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999988777899999999999988999999999999999999888765
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=414.75 Aligned_cols=226 Identities=35% Similarity=0.575 Sum_probs=190.2
Q ss_pred EEEEEEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHH---Hh
Q 000789 375 IELRDVYFRYPARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW---IR 450 (1283)
Q Consensus 375 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r 450 (1283)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++..++... +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 246999999999999999999999999999999999999999999999999998877544 57
Q ss_pred cccEEEccCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000789 451 EKIGLVSQEPILFA-TSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARA 527 (1283)
Q Consensus 451 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARa 527 (1283)
++||||||++.+|+ .|++||+.++.. ..+.++..+ .+.+.++.+ |+.......+.+||||||||++||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~v~e~l~~v--gL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR-----KVTELLALV--GLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999996 699999998642 122222211 112333333 55555556678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCCC
Q 000789 528 ILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEG 604 (1283)
Q Consensus 528 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~ 604 (1283)
|+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|++++++.++..
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~ 234 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKT 234 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCc
Confidence 9999999999999999999999999999999864 6899999999999976 999999999999999999999876544
Q ss_pred hhH
Q 000789 605 PYT 607 (1283)
Q Consensus 605 ~~~ 607 (1283)
.+.
T Consensus 235 ~~~ 237 (343)
T TIGR02314 235 PLA 237 (343)
T ss_pred HHH
Confidence 443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=391.06 Aligned_cols=215 Identities=38% Similarity=0.650 Sum_probs=192.2
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccC-CCCHHHHhcc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIK-KLQLKWIREK 452 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~-~~~~~~~r~~ 452 (1283)
.++++|++|+|+++ .++|+|+||+|++|+.++|+||||||||||+++|.|+++|++|+|.++|.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48899999999865 57999999999999999999999999999999999999999999999999998 4788899999
Q ss_pred cEEEccCC--CCCcccHHHHHhcCCCCC--CHHH----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000789 453 IGLVSQEP--ILFATSLRENIAYGKENA--TDQE----IRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAI 524 (1283)
Q Consensus 453 i~~v~Q~~--~l~~~ti~~ni~~~~~~~--~~~~----~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriai 524 (1283)
+|||+|+| .+|..||.|.++||.++. +.++ +.++++.+++.++ ..+...+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~-----------~~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEEL-----------LDRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhh-----------ccCCccccCCcceeeHHh
Confidence 99999999 799999999999997642 3333 4455555555544 444557999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 525 ARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS--RTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 525 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~--~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|.+|+.+|++||||||||+||+...+.+.+.++++.+. +|+|++||+++.+.. ||++++|++|+++.+|++.+++++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999999998754 799999999999987 999999999999999999998865
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=390.22 Aligned_cols=216 Identities=37% Similarity=0.622 Sum_probs=196.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCC-CCChHHHhcc
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELP-KFKLSWLRQQ 1117 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~-~~~~~~lR~~ 1117 (1283)
.|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|++.|++|.|.+||.+++ +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999865 57999999999999999999999999999999999999999999999999998 4788999999
Q ss_pred eEEEccCC--CCChhhHHHHHhcCCCC-CCCHHH----HHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHH
Q 000789 1118 MGLVSQEP--VLFNETIRTNIAYGKQG-GATEEE----IIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAI 1190 (1283)
Q Consensus 1118 i~~V~Qdp--~Lf~gTIreNl~~g~~~-~~sd~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlai 1190 (1283)
+|+|+|+| .+|..||.|.++||... ..+.+| +.++++.+++.++....| .+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 99999999 89999999999998532 345444 667888888887754444 4899999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCC--ceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1191 ARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN--RTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1191 ARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~--~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
|.+|..+|++||||||||+||+...+.+.+.++++.+. +|+|+|||+++.+.. |||++||++|+++.+|+|+|+.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999999998644 799999999999988 999999999999999999999875
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=395.19 Aligned_cols=473 Identities=15% Similarity=0.172 Sum_probs=368.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCC---CChhHHHHHHhhhHHHHHHHHHHH
Q 000789 761 ALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPA---NSSGSVGARLSTDASTIRSLVGDS 837 (1283)
Q Consensus 761 ~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~---~~~G~l~~rl~~D~~~i~~~~~~~ 837 (1283)
+.+|..++.+..+....+.|+......++-..|-+.+.++.+...-.|+.... +.+-..=.|+..|+...-+.....
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l 168 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDL 168 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHH
Confidence 55666777777777778889988899999999999999999888755544211 111223468999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------------HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000789 838 LALVVQNIATIAAGLIIAFT---------------ANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVA 902 (1283)
Q Consensus 838 l~~~~~~~~~~~~~~~~~~~---------------~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1283)
...++.+++.++...++++. +.-.+.++++..+++-.+..+...+.+.+..-+..+.++.....+
T Consensus 169 ~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L 248 (604)
T COG4178 169 SFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL 248 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 77788888777777766652 223334444445555555555666666666667777777888888
Q ss_pred HHHHhhhHHHHHhccHHHHHHHHHHHHhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Q 000789 903 NDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKV 982 (1283)
Q Consensus 903 ~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~ 982 (1283)
...-++.+.|..|+.|+...++.++.+........+..........+......+..++-+..+.-....|.+++|.++.+
T Consensus 249 vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa 328 (604)
T COG4178 249 VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQA 328 (604)
T ss_pred HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHH
Confidence 88889999999999999988888887777776655554444444444444445555555666777788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCCCCCCCCcCCc-cCCCcccEEEEEEEEECCCCCCc
Q 000789 983 FFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDS------KPKIDSSKDEGMT-LSSVGGAIELRCVSFKYPTRPDV 1055 (1283)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~------~~~~~~~~~~~~~-~~~~~g~I~~~nVsf~Y~~~~~~ 1055 (1283)
..++..+...++.+...++.+..-.+...|+.++.+. +++.......... ....+..|+|+|++..-|+. .
T Consensus 329 ~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~ 406 (604)
T COG4178 329 VGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--Q 406 (604)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--C
Confidence 9999999999999999999999999999999887642 1111111000000 00014679999999999864 3
Q ss_pred ccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCCCCChhhHHHH
Q 000789 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTN 1135 (1283)
Q Consensus 1056 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreN 1135 (1283)
..++++||+|+|||.+-|.|+||||||||+++|.|+++.-+|+|.+=. -+.+-|+||.|++-.||+||=
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~ 475 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREA 475 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHHH
Confidence 789999999999999999999999999999999999999999986531 134789999999999999999
Q ss_pred HhcCCCC-CCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHH
Q 000789 1136 IAYGKQG-GATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAES 1214 (1283)
Q Consensus 1136 l~~g~~~-~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~t 1214 (1283)
|+|.... +.+|+|+.++|.+|++.++++++.+ .+ .-..-||+|||||||+||.+|++|++++|||||||||+++
T Consensus 476 l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~~----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~ 550 (604)
T COG4178 476 LCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-ED----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550 (604)
T ss_pred HhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-cC----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHH
Confidence 9986543 3899999999999999999999743 22 2445799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEe
Q 000789 1215 ERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVK 1251 (1283)
Q Consensus 1215 e~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~ 1251 (1283)
|..+.+.+++...++|+|-|+||.......++.+-++
T Consensus 551 e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 551 EDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999999999999988877777766654
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=357.68 Aligned_cols=209 Identities=31% Similarity=0.521 Sum_probs=187.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCC---hHHHhc
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK---LSWLRQ 1116 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~---~~~lR~ 1116 (1283)
|+|+||+.+|+.. +++|+||||+|++||.+-++|||||||||++|+|++...|++|+|.++|.|++.++ ...||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999965 57999999999999999999999999999999999999999999999999998776 456899
Q ss_pred ceEEEccCCCCC-hhhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHH
Q 000789 1117 QMGLVSQEPVLF-NETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAI 1190 (1283)
Q Consensus 1117 ~i~~V~Qdp~Lf-~gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlai 1190 (1283)
+||+|+||..|. +-|+.||++|... ...+ .+++.++++.+|+.+-...+|. .|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 999999999766 6799999987521 1223 3567789999999999999985 899999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhhc-CEEEEEeCCEEEEecCh
Q 000789 1191 ARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKNA-DIIAVVKNGVIAEQGSH 1261 (1283)
Q Consensus 1191 ARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~~-D~I~vl~~G~Ive~Gt~ 1261 (1283)
|||++.+|++||-||||-+|||++...|++.+.+.- .|.||++.||+.+.+..+ .|++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999999998863 578999999999999884 68999999999976544
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-44 Score=369.17 Aligned_cols=224 Identities=32% Similarity=0.520 Sum_probs=193.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCCh---HHHh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKL---SWLR 1115 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~---~~lR 1115 (1283)
.|++++|+++|+++ .|++||||+|++||.++|+|+||||||||++++.|+..|++|+|.++|.|+.+++- ..+|
T Consensus 8 ~I~vr~v~~~fG~~---~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCCE---EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 59999999999754 69999999999999999999999999999999999999999999999999998875 4568
Q ss_pred cceEEEccCCCCCh-hhHHHHHhcCCC--CCCCHHHHH----HHHHHhChHHH-HHhCCCCcccccCCCCCCCChhHHHH
Q 000789 1116 QQMGLVSQEPVLFN-ETIRTNIAYGKQ--GGATEEEII----AATEASNAHNF-ISALPHGYETNVGERGVQLSGGQKQR 1187 (1283)
Q Consensus 1116 ~~i~~V~Qdp~Lf~-gTIreNl~~g~~--~~~sd~ei~----~al~~a~l~~~-I~~lp~Gldt~vge~G~~LSgGQrQR 1187 (1283)
+++|+++|...||+ -||+||+.|-.. .+.+++++. ..++.+|+..- .+.+| +.||||.+.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 99999999999995 499999987421 134555444 35666776655 34444 4799999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1188 IAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1188 laiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
+|||||+.-+|+||++|||||+|||.+...+-+.|+++.+ +.|+++|||+++++.. ||||+++.+|+|+.+|+++||
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999998887653 7899999999999987 899999999999999999999
Q ss_pred HhccCchhHHHH
Q 000789 1265 MKITDGAYASLV 1276 (1283)
Q Consensus 1265 l~~~~g~y~~L~ 1276 (1283)
.+..+-..++.+
T Consensus 234 ~~sd~P~v~qf~ 245 (263)
T COG1127 234 LASDDPWVRQFF 245 (263)
T ss_pred HhCCCHHHHHHh
Confidence 986444444443
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=389.19 Aligned_cols=220 Identities=40% Similarity=0.715 Sum_probs=202.1
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcc
Q 000789 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQ 1117 (1283)
Q Consensus 1038 g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1117 (1283)
+.|+++|++++|+.. ..++++|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999742 2469999999999999999999999999999999999999999999999999988777778899
Q ss_pred eEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccC
Q 000789 1118 MGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKN 1197 (1283)
Q Consensus 1118 i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~ 1197 (1283)
++|+||++.+|..|++||+.++.. ..+++++.++++..++.+.+..+|.|++|.+.+...+||||||||++||||++.+
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999987532 3456678888999999999999999999999988899999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEec
Q 000789 1198 PKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQG 1259 (1283)
Q Consensus 1198 p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~G 1259 (1283)
|++|||||||++||+++...+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999987668999999999988789999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=390.07 Aligned_cols=220 Identities=36% Similarity=0.656 Sum_probs=204.9
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcc
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREK 452 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 452 (1283)
+.|+++|++++|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999743 2469999999999999999999999999999999999999999999999999988888888999
Q ss_pred cEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000789 453 IGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNP 532 (1283)
Q Consensus 453 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~ 532 (1283)
++|++|++.+|+.|++||+.+... ...+++.++++..++.+++..+|.|+++..++.+.+||||||||++|||||+.+|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987543 4567788889999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecC
Q 000789 533 KILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGT 594 (1283)
Q Consensus 533 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~ 594 (1283)
+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999877789999999999998899999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=364.68 Aligned_cols=472 Identities=19% Similarity=0.227 Sum_probs=357.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHhhhHHHHHHHHHHHHHHH
Q 000789 762 LIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALV 841 (1283)
Q Consensus 762 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~ 841 (1283)
..|+++..+..+.+.+........+++...++|.++.++++..|+.-+++ -..++++.++++|+.++. +-...++.+
T Consensus 52 ~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier--~~~~rlla~L~~Dvr~IS-f~~s~lp~~ 128 (546)
T COG4615 52 PEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER--LGSARLLAGLTSDVRNIS-FAFSRLPEL 128 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH--hcccchhhhhccccccee-ehHhhhHHH
Confidence 33444444444555566667778899999999999999999999999985 789999999999999998 555667778
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHH
Q 000789 842 VQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKV 921 (1283)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~ 921 (1283)
.++...+++++..+.+.++++.+++++.+.+.++..++......+.....++.+.+.....+..++|.++++...--.+.
T Consensus 129 ~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~ 208 (546)
T COG4615 129 VQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEY 208 (546)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHH
Confidence 88899999999999999999888888877777777766666555567777788888889999999999988765332221
Q ss_pred HHHHHHHHhcHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Q 000789 922 MDLYEKKCEGPLKNGVRRGILSG----AGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTS 997 (1283)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 997 (1283)
.+.+......+...+...... ....++..+++......+|+...... .+.....++...+.+.-.|+.++.
T Consensus 209 --~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w---~st~~a~tivlvlLflr~pL~s~v 283 (546)
T COG4615 209 --VHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGW---ASTNVAATIVLVLLFLRTPLLSAV 283 (546)
T ss_pred --HHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHhhHHHHHH
Confidence 122222222222222111111 22233444455555555555443332 233333344445566678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCccCCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCC
Q 000789 998 AMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGES 1077 (1283)
Q Consensus 998 ~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~S 1077 (1283)
...|.+..+..+.+++.++-..++..+...+. +.|.. ..|+++||.|+|++. .--+..||++|++||.|-|+|.|
T Consensus 284 gilP~l~~AqvA~~kiakle~~~~~a~~~~~q--~~p~~-~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~N 358 (546)
T COG4615 284 GILPTLLTAQVAFNKIAKLELAPYKADFPRPQ--AFPDW-KTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGN 358 (546)
T ss_pred hhhhHHHHHHHHHHHHHHhhcCCccccCCCCC--cCCcc-cceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCC
Confidence 99999999999999999887654433322221 11222 369999999999853 24588999999999999999999
Q ss_pred CCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhC
Q 000789 1078 GSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASN 1157 (1283)
Q Consensus 1078 GSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~ 1157 (1283)
||||||++++|.|+|.|++|+|++||.+++.-+++++|+-++-|+-|.+||+.++ |....++++.+..-+++-.
T Consensus 359 GsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLe 432 (546)
T COG4615 359 GSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLE 432 (546)
T ss_pred CCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998764 4344478888877777665
Q ss_pred hHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEe
Q 000789 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVA 1235 (1283)
Q Consensus 1158 l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~Ia 1235 (1283)
+.... ++-+|-=+ ...||-|||.|+|+--|++-+.+|++|||=-+--||.=.+...+.+--.. .|||++.||
T Consensus 433 l~~kt-sl~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIs 506 (546)
T COG4615 433 LAHKT-SLNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS 506 (546)
T ss_pred Hhhhh-cccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEe
Confidence 54432 22222211 13799999999999999999999999999999999999999998875543 489999999
Q ss_pred cCchHHhhcCEEEEEeCCEEEEe
Q 000789 1236 HRLTTIKNADIIAVVKNGVIAEQ 1258 (1283)
Q Consensus 1236 Hrl~ti~~~D~I~vl~~G~Ive~ 1258 (1283)
|+-.--..|||++.|++|+++|.
T Consensus 507 HDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 507 HDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred cCchhhhhHHHHHHHhcCceeec
Confidence 99999999999999999999986
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=405.65 Aligned_cols=221 Identities=25% Similarity=0.447 Sum_probs=187.1
Q ss_pred cEEEEEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCC-------
Q 000789 1039 AIELRCVSFKYPTRP--DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF------- 1109 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~------- 1109 (1283)
.|+++||+|+|+... ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997421 23699999999999999999999999999999999999999999999999998653
Q ss_pred ---------ChHHHhcceEEEccCC--CCChhhHHHHHhcCCC-CCCCHHHHHHHHHHhChHHHHHhCCCCcc-cccCCC
Q 000789 1110 ---------KLSWLRQQMGLVSQEP--VLFNETIRTNIAYGKQ-GGATEEEIIAATEASNAHNFISALPHGYE-TNVGER 1176 (1283)
Q Consensus 1110 ---------~~~~lR~~i~~V~Qdp--~Lf~gTIreNl~~g~~-~~~sd~ei~~al~~a~l~~~I~~lp~Gld-t~vge~ 1176 (1283)
+...+|++++||+|+| .+|+.|++||+.++.. ...++++..+. +.+++..+ |++ ......
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKL-----AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCC
Confidence 3567899999999998 6999999999987632 12344443221 12344444 454 345677
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHh-hcCEEEEEeCCE
Q 000789 1177 GVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIK-NADIIAVVKNGV 1254 (1283)
Q Consensus 1177 G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~-~~D~I~vl~~G~ 1254 (1283)
+.+||||||||++|||||+++|+|||||||||+||+.++..+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999999998764 5789999999999875 599999999999
Q ss_pred EEEecChHHHHh
Q 000789 1255 IAEQGSHDALMK 1266 (1283)
Q Consensus 1255 Ive~Gt~~eLl~ 1266 (1283)
+++.|+|+++.+
T Consensus 254 i~~~g~~~~~~~ 265 (320)
T PRK13631 254 ILKTGTPYEIFT 265 (320)
T ss_pred EEEeCCHHHHhc
Confidence 999999998754
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=403.51 Aligned_cols=219 Identities=34% Similarity=0.554 Sum_probs=197.7
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+.+|+ +..+++|+||+|++||.++++|||||||||++++|+||..|++|+|.+||.|+.+++++ ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 699999999997 35699999999999999999999999999999999999999999999999999998876 6899
Q ss_pred EEEccCCCCC-hhhHHHHHhcCCC--CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHH
Q 000789 1119 GLVSQEPVLF-NETIRTNIAYGKQ--GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIA 1191 (1283)
Q Consensus 1119 ~~V~Qdp~Lf-~gTIreNl~~g~~--~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiA 1191 (1283)
++|+|+..|| +.||+||++||.. ....+ +.+.++++.+++.++-.+.|. +|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----------qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH-----------QLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh-----------hhChHHHHHHHHH
Confidence 9999999999 6799999999854 11232 367889999999998777764 8999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhcc
Q 000789 1192 RAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKIT 1268 (1283)
Q Consensus 1192 RAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~ 1268 (1283)
|||..+|++||||||-||||.+-...++.-++++. .+.|.|+|||+-+.... +|||+||++|+|.+.|+|+|+...+
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999999998764 37899999999887654 9999999999999999999999987
Q ss_pred CchhH
Q 000789 1269 DGAYA 1273 (1283)
Q Consensus 1269 ~g~y~ 1273 (1283)
...|-
T Consensus 229 ~~~fV 233 (352)
T COG3842 229 ATRFV 233 (352)
T ss_pred chHHH
Confidence 66654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-44 Score=367.05 Aligned_cols=215 Identities=34% Similarity=0.531 Sum_probs=190.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCC---hHHHh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK---LSWLR 1115 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~---~~~lR 1115 (1283)
.|+++||+.+||+ .+.+|+||||+|++||.|||+|+||||||||+++|.|+.+|++|+|+++|.++...+ +..+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 467999999999999999999999999999999999999999999999999998887 66778
Q ss_pred cceEEEccCCCCC-hhhHHHHHhcCCCC----------CCCH---HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCC
Q 000789 1116 QQMGLVSQEPVLF-NETIRTNIAYGKQG----------GATE---EEIIAATEASNAHNFISALPHGYETNVGERGVQLS 1181 (1283)
Q Consensus 1116 ~~i~~V~Qdp~Lf-~gTIreNl~~g~~~----------~~sd---~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1181 (1283)
++||+|+|.+-|- ..|+.+|+..|..+ -.+. ....+|++++++.+..-. +..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCC
Confidence 9999999999887 56999999766432 1233 346778888888877532 345899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhh-cCEEEEEeCCEEEEe
Q 000789 1182 GGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQ 1258 (1283)
Q Consensus 1182 gGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~ 1258 (1283)
|||+||++|||||..+|+|++-|||||+|||.+.+.|++.|++.. .|.|+|+.-|.++..+. ||||+-|++|+|+..
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999999874 57899999999999977 999999999999999
Q ss_pred cChHHHHh
Q 000789 1259 GSHDALMK 1266 (1283)
Q Consensus 1259 Gt~~eLl~ 1266 (1283)
|+++||-+
T Consensus 230 g~~~el~~ 237 (258)
T COG3638 230 GPASELTD 237 (258)
T ss_pred CChhhhhH
Confidence 99999643
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=381.94 Aligned_cols=217 Identities=35% Similarity=0.559 Sum_probs=185.3
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCc---ccCCCCHHHHh
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGI---DIKKLQLKWIR 450 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~---~~~~~~~~~~r 450 (1283)
.|+++|+++.|+. .++++|||++|+.||.+|+.||||||||||+++|+|+..|++|+|.+||. |.++.+ .-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 4788999999974 46899999999999999999999999999999999999999999999999 655533 334
Q ss_pred cccEEEccCCCCCc-ccHHHHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000789 451 EKIGLVSQEPILFA-TSLRENIAYGKEN--------ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQR 521 (1283)
Q Consensus 451 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqr 521 (1283)
++||+|+|+..||. .||++||+||.+- ....++.+.++.++++.+-++. +.+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ry-----------P~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY-----------PAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcC-----------chhcChHHHHH
Confidence 68999999999986 5999999999731 1223445555555555444444 46999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 522 IAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 522 iaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
|||||||..+|++||||||+++||++-.+.+.+.|+++.. +.|+++|||+.+++.. ||||++|++|+|...|+++|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999998754 6899999999999765 999999999999999999999
Q ss_pred hcCCCChh
Q 000789 599 IKDPEGPY 606 (1283)
Q Consensus 599 ~~~~~~~~ 606 (1283)
...|...+
T Consensus 226 ~~~P~s~f 233 (345)
T COG1118 226 YDHPASRF 233 (345)
T ss_pred hcCCCccc
Confidence 88765443
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=373.29 Aligned_cols=207 Identities=35% Similarity=0.515 Sum_probs=174.9
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCCh---HHH-
Q 000789 1040 IELRCVSFKYPTRP-DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKL---SWL- 1114 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~---~~l- 1114 (1283)
++++||+..|.... ...+|+++||+|++||.|||+||||||||||+++|.++..|++|.|.++|.|+..++- ..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999997432 2479999999999999999999999999999999999999999999999999998884 334
Q ss_pred hcceEEEccCCCCC-hhhHHHHHhc----CCCCC-CCHHHHHHHHHHhChHHHHH-hCCCCcccccCCCCCCCChhHHHH
Q 000789 1115 RQQMGLVSQEPVLF-NETIRTNIAY----GKQGG-ATEEEIIAATEASNAHNFIS-ALPHGYETNVGERGVQLSGGQKQR 1187 (1283)
Q Consensus 1115 R~~i~~V~Qdp~Lf-~gTIreNl~~----g~~~~-~sd~ei~~al~~a~l~~~I~-~lp~Gldt~vge~G~~LSgGQrQR 1187 (1283)
|++||+|+|+..|+ +.|++||+.+ ..... ..++.+.+.++..++.+... ..| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 46799999999877 5699999984 21111 12344555666666665544 333 4899999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhhcCEEEEEeCCEEEE
Q 000789 1188 IAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKNADIIAVVKNGVIAE 1257 (1283)
Q Consensus 1188 laiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive 1257 (1283)
+||||||+.+|+|++.||||.+||++|.+.|.+.+++.. .++|+|+|||+......|||++.|.+|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999985 3689999999999999999999999999543
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=379.32 Aligned_cols=210 Identities=29% Similarity=0.523 Sum_probs=184.1
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++|++|+|.++ ++|+||||++++|++++|+||||||||||+|+|+|+.+|++|+|.++|.+++.... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999742 59999999999999999999999999999999999999999999999988765432 4689
Q ss_pred EEEccCC---CCCcccHHHHHhcCCCCC----------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000789 454 GLVSQEP---ILFATSLRENIAYGKENA----------TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQ 520 (1283)
Q Consensus 454 ~~v~Q~~---~l~~~ti~~ni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkq 520 (1283)
|||||.. +-|+-||+|-+.+|.... +.+++.++++.+++.++.++ .-..|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-----------~i~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-----------QIGELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-----------cccccCcHHHH
Confidence 9999965 568889999999985321 23678888888887766543 34579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 521 RIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 521 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
|+.|||||+++|++|+|||||+++|+.++..+.+.|.++++ |+|+++||||++.+.. +|+|+.|+ ++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999999875 7999999999999875 99999995 578899999998
Q ss_pred hcC
Q 000789 599 IKD 601 (1283)
Q Consensus 599 ~~~ 601 (1283)
+..
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 764
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=379.22 Aligned_cols=211 Identities=28% Similarity=0.498 Sum_probs=186.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++|++|+|..+ +||+||||+|++|+.++|+||||||||||+|+++|+..|++|+|.++|.++++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 59999999999743 49999999999999999999999999999999999999999999999998876543 5789
Q ss_pred EEEccCC---CCChhhHHHHHhcCCCCC---------CCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHH
Q 000789 1119 GLVSQEP---VLFNETIRTNIAYGKQGG---------ATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQ 1186 (1283)
Q Consensus 1119 ~~V~Qdp---~Lf~gTIreNl~~g~~~~---------~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1186 (1283)
|||||.. .-|.-||+|=+.+|.... .+.+++.+||+++++.++. |.++| .|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-------~r~i~----~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-------DRQIG----ELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-------CCccc----ccCcHHHH
Confidence 9999965 458899999998873221 1347899999999999885 34565 59999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1187 RIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV-NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1187 RlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~-~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
|+.|||||+++|++|+|||||+++|+.++..|.+.|+++.+ ||||++|+|+++.+.. ||+|+.|. +++...|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999999864 8999999999999876 99999996 578899999998
Q ss_pred Hhc
Q 000789 1265 MKI 1267 (1283)
Q Consensus 1265 l~~ 1267 (1283)
+..
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 863
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=385.85 Aligned_cols=220 Identities=43% Similarity=0.735 Sum_probs=201.3
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcc
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREK 452 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 452 (1283)
++|+++|+++.|++. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999642 2469999999999999999999999999999999999999999999999999887777777889
Q ss_pred cEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000789 453 IGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNP 532 (1283)
Q Consensus 453 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~ 532 (1283)
++|++|++.+|..|+.||+.++.+....+++.+.++..++.+.++.+|.|++|.+.+...+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999899999999875544556777888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEec
Q 000789 533 KILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKG 593 (1283)
Q Consensus 533 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g 593 (1283)
++|||||||++||+.+...+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999987668999999999988779999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=402.96 Aligned_cols=222 Identities=27% Similarity=0.482 Sum_probs=191.0
Q ss_pred ccEEEEEEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCC------
Q 000789 373 GEIELRDVYFRYPARP--EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL------ 444 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~------ 444 (1283)
..|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3599999999997421 23699999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhcccEEEccCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccC
Q 000789 445 ----------QLKWIREKIGLVSQEP--ILFATSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLD-TMAGE 509 (1283)
Q Consensus 445 ----------~~~~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~ 509 (1283)
+...+|++|+||+|+| .+|+.||+|||.++.. ..+.++..+ .+.++++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK-----LAKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCChhHhcC
Confidence 3456789999999998 6899999999998742 223333221 223566666 775 56788
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCC
Q 000789 510 HGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIR-NADLIAVVHQG 587 (1283)
Q Consensus 510 ~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G 587 (1283)
.+.+||||||||++|||||+++|+||||||||++||+.+++.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999998874 4789999999999875 59999999999
Q ss_pred EEeEecChhHHhcC
Q 000789 588 KIVEKGTHDELIKD 601 (1283)
Q Consensus 588 ~i~~~g~~~~l~~~ 601 (1283)
+|++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999999765
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=373.41 Aligned_cols=198 Identities=38% Similarity=0.534 Sum_probs=176.6
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.+++++|+++|+. ..||+|+||+|++||.|+|+||||||||||++++.|+.+|++|+|.++|.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4899999999985 5699999999999999999999999999999999999999999999999988543 3579
Q ss_pred EEEccCCCCCh-hhHHHHHhcCCCCC-C----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHH
Q 000789 1119 GLVSQEPVLFN-ETIRTNIAYGKQGG-A----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~-gTIreNl~~g~~~~-~----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiAR 1192 (1283)
+||+|++.||. -||+||+.++.... . ..+.+.+.++.+|+.+|-+..|. +||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHH
Confidence 99999999997 59999999874311 1 23468889999999999888875 89999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeC--CEE
Q 000789 1193 AVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKN--GVI 1255 (1283)
Q Consensus 1193 All~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~--G~I 1255 (1283)
||+.+|+||+||||.+|||+.|...+|+.+.++.+ ++||++|||+.+.... +|||+||.+ |+|
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 99999999999999999999999999999988753 5899999999988765 999999999 555
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=392.12 Aligned_cols=218 Identities=33% Similarity=0.517 Sum_probs=185.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCCh---HHHhc
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKL---SWLRQ 1116 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~---~~lR~ 1116 (1283)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999973 359999999999999999999999999999999999999999999999999987664 56789
Q ss_pred ceEEEccCCCCChh-hHHHHHhcCCC--CCCCHH----HHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHH
Q 000789 1117 QMGLVSQEPVLFNE-TIRTNIAYGKQ--GGATEE----EIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIA 1189 (1283)
Q Consensus 1117 ~i~~V~Qdp~Lf~g-TIreNl~~g~~--~~~sd~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1189 (1283)
.++||||++.+|.. |++||+.++.. ...+.+ ++.++++..++.++.. ....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-----------LYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHH
Confidence 99999999999875 99999986521 112332 3455566555544332 233479999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHh
Q 000789 1190 IARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1190 iARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1266 (1283)
|||||+++|+||||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999999986
Q ss_pred ccCchh
Q 000789 1267 ITDGAY 1272 (1283)
Q Consensus 1267 ~~~g~y 1272 (1283)
. ...|
T Consensus 227 ~-~~~~ 231 (235)
T cd03261 227 S-DDPL 231 (235)
T ss_pred C-CChh
Confidence 4 4444
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=387.04 Aligned_cols=219 Identities=51% Similarity=0.833 Sum_probs=199.4
Q ss_pred CcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHh
Q 000789 1036 VGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLR 1115 (1283)
Q Consensus 1036 ~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR 1115 (1283)
..+.|+++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45679999999999753234699999999999999999999999999999999999999999999999999887777888
Q ss_pred cceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHc
Q 000789 1116 QQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVL 1195 (1283)
Q Consensus 1116 ~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll 1195 (1283)
+.++|+||++.+|+.|++||+.++.. ....+++.+..+..++.++++.+|.|+++.+.....+||||||||++||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999987632 34455666667778889999999999999999999999999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEE
Q 000789 1196 KNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVI 1255 (1283)
Q Consensus 1196 ~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~I 1255 (1283)
++|++|||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999998777899999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=389.64 Aligned_cols=213 Identities=36% Similarity=0.589 Sum_probs=184.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccC-----CCCcceEEECCccCCCCC--hH
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFY-----DPDSGHVLLDNIELPKFK--LS 1112 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~-----~~~~G~I~idG~di~~~~--~~ 1112 (1283)
|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 5789999999743 5999999999999999999999999999999999999 999999999999998776 56
Q ss_pred HHhcceEEEccCCCCChhhHHHHHhcCCC-CCC-----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHH
Q 000789 1113 WLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA-----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQ 1186 (1283)
Q Consensus 1113 ~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~-----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1186 (1283)
.+|++++|+||++.+|..|++||+.++.. ... .++++.++++..++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 77889999999999998899999986421 111 13456677777777655443321 4589999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1187 RIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1187 RlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
|++|||||+++|++|||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999998656899999999998875 999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=385.23 Aligned_cols=489 Identities=17% Similarity=0.163 Sum_probs=348.4
Q ss_pred HHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcc
Q 000789 73 IFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTG 152 (1283)
Q Consensus 73 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~f~~~~~~G 152 (1283)
..+.+.+++...+.. .++..+..+..++.+..++...+.++......+.-.-+-..+.++.+...-.|+.. ..|
T Consensus 69 w~~~~~~aL~~~d~~----~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~--~~~ 142 (604)
T COG4178 69 WNGPFYNALARRDLA----AFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA--QAG 142 (604)
T ss_pred hhhHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--hcc
Confidence 345555555433322 22223333444444444444445554433333333334444555555555333332 333
Q ss_pred HH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------HHHHHHHHHHHHHHHHH
Q 000789 153 EV------IGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARG---------------WFLALVLLACLPAIVIA 211 (1283)
Q Consensus 153 ~l------~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------~~l~l~~l~~~p~~~~~ 211 (1283)
.+ =+|+..|+..+.+........++.++++++.-.+++...+ ..+..++++.+++..++
T Consensus 143 ~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~ 222 (604)
T COG4178 143 GIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLL 222 (604)
T ss_pred cccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHH
Confidence 22 3799999999888877777777777776655444443111 12223344445555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000789 212 GGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIG 291 (1283)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1283)
..+++|.+.+..-+.++..++.-....-.-++...|-.|+.|+.+.++.++......+...+......-+..+......+
T Consensus 223 ~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~ 302 (604)
T COG4178 223 THLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWL 302 (604)
T ss_pred HHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHH
Confidence 66788888888888888888887788888889999999999999998877766665554433333332222223233333
Q ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--C---CCCCCCCCC
Q 000789 292 TYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKP--K---IDPYDTSGI 366 (1283)
Q Consensus 292 ~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~--~---~~~~~~~~~ 366 (1283)
+.++-+..++.....|.++.|.++.....+......++.+...+..+..-++...|+.++-+.-. + ..+......
T Consensus 303 s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~ 382 (604)
T COG4178 303 SVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRR 382 (604)
T ss_pred HHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccccc
Confidence 33333344556677899999999988888888888888888889999999999999998764221 1 001010000
Q ss_pred c--ccCccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCC
Q 000789 367 T--LEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL 444 (1283)
Q Consensus 367 ~--~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~ 444 (1283)
. ....+..|+++|++..-|+. ...+++.||++++|+.+-|.||||||||||++.|+|+++--+|+|.+..
T Consensus 383 ~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~------ 454 (604)
T COG4178 383 IDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA------ 454 (604)
T ss_pred ccccccccceeEEeeeeEECCCC--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC------
Confidence 0 01114689999999998753 3689999999999999999999999999999999999999999997752
Q ss_pred CHHHHhcccEEEccCCCCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000789 445 QLKWIREKIGLVSQEPILFATSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRI 522 (1283)
Q Consensus 445 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri 522 (1283)
-..+-|+||.|++-.||.||-|+|+... .+++++.+++.++++.++++++.+ .+. -...||+||||||
T Consensus 455 -----~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~~~----W~~vLS~GEqQRl 524 (604)
T COG4178 455 -----DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-EDR----WDRVLSGGEQQRL 524 (604)
T ss_pred -----CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-cCc----HhhhcChhHHHHH
Confidence 1358999999999999999999998754 789999999999999999999843 222 3457999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEe
Q 000789 523 AIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVH 585 (1283)
Q Consensus 523 aiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~ 585 (1283)
|+||.|+++|++++|||+|||||+++|..+.+.+++...+.|+|-|.||.......++.+-+.
T Consensus 525 afARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 525 AFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 999999999999999999999999999999999999889999999999988877666655554
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=397.01 Aligned_cols=218 Identities=31% Similarity=0.531 Sum_probs=191.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743224599999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--CCChhhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHH
Q 000789 1119 GLVSQEP--VLFNETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIA 1191 (1283)
Q Consensus 1119 ~~V~Qdp--~Lf~gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiA 1191 (1283)
+||+|+| .++..|++|||.++.. ...+ ++.+.++++.+++.++....| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 4667899999987621 1223 245677888888876655443 48999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhc
Q 000789 1192 RAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1192 RAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 7899999999999988999999999999999999998764
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-43 Score=385.24 Aligned_cols=220 Identities=50% Similarity=0.816 Sum_probs=198.9
Q ss_pred CccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHH
Q 000789 370 KIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWI 449 (1283)
Q Consensus 370 ~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~ 449 (1283)
...+.|+++|++++|+++.+.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+....
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 34567999999999975333469999999999999999999999999999999999999999999999999887777777
Q ss_pred hcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 000789 450 REKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAIL 529 (1283)
Q Consensus 450 r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~ 529 (1283)
++.++|++|++.+|+.|++||+.++.......++.+.++...++++++.+|.|+++.+.+++.+||||||||++|||||+
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999876544445555556667788999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEE
Q 000789 530 KNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKI 589 (1283)
Q Consensus 530 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i 589 (1283)
++|++|||||||++||+++.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999998777899999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-43 Score=387.05 Aligned_cols=224 Identities=30% Similarity=0.544 Sum_probs=192.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999974 3599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCCCCChhhHHHHHhcCCC-CCCCHHHHHHHHHHhChH-HHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHcc
Q 000789 1119 GLVSQEPVLFNETIRTNIAYGKQ-GGATEEEIIAATEASNAH-NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLK 1196 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~gTIreNl~~g~~-~~~sd~ei~~al~~a~l~-~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~ 1196 (1283)
+|+||++.+|+.|++||+.++.. ....++++.+.++..++. ++ ......+||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY-----------ATRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH-----------hhCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999987522 112234555566655553 22 223456899999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhccCchhH
Q 000789 1197 NPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITDGAYA 1273 (1283)
Q Consensus 1197 ~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~ 1273 (1283)
+|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+...|.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 9999999999999999999999999998753 7899999999999876 999999999999999999999875444455
Q ss_pred HHH
Q 000789 1274 SLV 1276 (1283)
Q Consensus 1274 ~L~ 1276 (1283)
+.+
T Consensus 229 ~~~ 231 (241)
T PRK14250 229 KLF 231 (241)
T ss_pred HHH
Confidence 544
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=406.72 Aligned_cols=219 Identities=29% Similarity=0.494 Sum_probs=191.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999973 458999999999999999999999999999999999999999999999999987664 46889
Q ss_pred EEEccCCCCCh-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHH
Q 000789 1119 GLVSQEPVLFN-ETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiAR 1192 (1283)
+||+|++.+|. .|++||+.|+.. ...+ ++++.++++..++.++..+.| ..||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999998632 1122 345677778878766654443 479999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhccC
Q 000789 1193 AVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITD 1269 (1283)
Q Consensus 1193 All~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~~ 1269 (1283)
||+++|+|||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|+||++|+|++.|+++++.+++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998754 7899999999998855 99999999999999999999998766
Q ss_pred chhH
Q 000789 1270 GAYA 1273 (1283)
Q Consensus 1270 g~y~ 1273 (1283)
..|.
T Consensus 230 ~~~~ 233 (351)
T PRK11432 230 SRFM 233 (351)
T ss_pred chHH
Confidence 5443
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-43 Score=389.32 Aligned_cols=220 Identities=30% Similarity=0.449 Sum_probs=192.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC---CCcceEEECCccCCCCChHHHh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD---PDSGHVLLDNIELPKFKLSWLR 1115 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~---~~~G~I~idG~di~~~~~~~lR 1115 (1283)
.|+++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++ |++|+|.+||.++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999974 359999999999999999999999999999999999985 6899999999999888888889
Q ss_pred cceEEEccCCCCChhhHHHHHhcCCC-C------CCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHH
Q 000789 1116 QQMGLVSQEPVLFNETIRTNIAYGKQ-G------GATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRI 1188 (1283)
Q Consensus 1116 ~~i~~V~Qdp~Lf~gTIreNl~~g~~-~------~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1188 (1283)
+.++|+||+|.+|+.|++||+.++.. . +..++++.++++.+++.+++.. .....+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 99999999999999999999976521 0 1122346677777777655433 23445678999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1189 aiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
+||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999998778999999999998865 999999999999999999999864
Q ss_pred c
Q 000789 1268 T 1268 (1283)
Q Consensus 1268 ~ 1268 (1283)
+
T Consensus 232 ~ 232 (246)
T PRK14269 232 P 232 (246)
T ss_pred C
Confidence 3
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-43 Score=386.33 Aligned_cols=217 Identities=37% Similarity=0.582 Sum_probs=185.3
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCH---HHHhc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL---KWIRE 451 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r~ 451 (1283)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999963 369999999999999999999999999999999999999999999999999877654 56788
Q ss_pred ccEEEccCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000789 452 KIGLVSQEPILFAT-SLRENIAYGKE---NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARA 527 (1283)
Q Consensus 452 ~i~~v~Q~~~l~~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARa 527 (1283)
.|+||+|++.+|+. |++||+.++.. ..+.++..+. +.+.++.+ |+.........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-----VLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999999986 99999987632 1222222211 12334444 55555566677999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 528 ILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 528 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999998753 6899999999999876 999999999999999999998754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=406.53 Aligned_cols=220 Identities=26% Similarity=0.479 Sum_probs=192.7
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|++ +..+|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999942 24699999999999999999999999999999999999999999999999999887754 5799
Q ss_pred EEEccCCCCCh-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHH
Q 000789 1119 GLVSQEPVLFN-ETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiAR 1192 (1283)
+||||++.+|. .|++|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 699999998632 1123 245677888888887766655 389999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhccC
Q 000789 1193 AVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITD 1269 (1283)
Q Consensus 1193 All~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~~ 1269 (1283)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999998754 6899999999998765 99999999999999999999988765
Q ss_pred chhH
Q 000789 1270 GAYA 1273 (1283)
Q Consensus 1270 g~y~ 1273 (1283)
..|.
T Consensus 228 ~~~~ 231 (356)
T PRK11650 228 STFV 231 (356)
T ss_pred cHHH
Confidence 5443
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-43 Score=405.04 Aligned_cols=218 Identities=30% Similarity=0.499 Sum_probs=187.1
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++|++++|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.++. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999942 24699999999999999999999999999999999999999999999999999887654 4789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000789 454 GLVSQEPILFAT-SLRENIAYGKEN--ATD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526 (1283)
Q Consensus 454 ~~v~Q~~~l~~~-ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiAR 526 (1283)
|||+|++.+|+. ||+|||.|+... .+. +++.++++..+ ++......+.+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILE-----------LEPLLDRKPRELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcC-----------ChhHhhCChhhCCHHHHHHHHHHH
Confidence 999999999964 999999987531 222 22344444444 444445555799999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCC
Q 000789 527 AILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPE 603 (1283)
Q Consensus 527 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~ 603 (1283)
||+++|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999998754 6899999999998865 99999999999999999999988755
Q ss_pred Chh
Q 000789 604 GPY 606 (1283)
Q Consensus 604 ~~~ 606 (1283)
..|
T Consensus 228 ~~~ 230 (356)
T PRK11650 228 STF 230 (356)
T ss_pred cHH
Confidence 444
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-43 Score=404.66 Aligned_cols=222 Identities=34% Similarity=0.525 Sum_probs=187.8
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHH---Hh
Q 000789 1040 IELRCVSFKYPTRP-DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW---LR 1115 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---lR 1115 (1283)
|+++||+++|+... +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 346999999999999999999999999999999999999999999999999998877544 47
Q ss_pred cceEEEccCCCCCh-hhHHHHHhcCCC-CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHH
Q 000789 1116 QQMGLVSQEPVLFN-ETIRTNIAYGKQ-GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIA 1189 (1283)
Q Consensus 1116 ~~i~~V~Qdp~Lf~-gTIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1189 (1283)
++|+||||++.+|. .|++||+.++.. ...+. +++.+.++..++.++.. ....+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-----------RYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 89999999999886 799999986421 12232 33455555555544433 334589999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHh
Q 000789 1190 IARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1190 iARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1266 (1283)
|||||+++|+|||||||||+||+.+...+++.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999999987
Q ss_pred ccCchh
Q 000789 1267 ITDGAY 1272 (1283)
Q Consensus 1267 ~~~g~y 1272 (1283)
.+...+
T Consensus 231 ~~~~~~ 236 (343)
T PRK11153 231 HPKHPL 236 (343)
T ss_pred CCCcHH
Confidence 544333
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=402.95 Aligned_cols=217 Identities=32% Similarity=0.569 Sum_probs=187.5
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999963 4589999999999999999999999999999999999999999999999999876643 5789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCC--CCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000789 454 GLVSQEPILFAT-SLRENIAYGKEN--ATDQ----EIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526 (1283)
Q Consensus 454 ~~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiAR 526 (1283)
|||+|++.+|+. ||+|||.|+... .+.+ ++.++++.. |+.......+.+||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~-----------gl~~~~~r~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV-----------DLAGFEDRYVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHH
Confidence 999999999975 999999997431 2222 333344443 4444455566799999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCC
Q 000789 527 AILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPE 603 (1283)
Q Consensus 527 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~ 603 (1283)
||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998854 6899999999999865 99999999999999999999988765
Q ss_pred Chh
Q 000789 604 GPY 606 (1283)
Q Consensus 604 ~~~ 606 (1283)
..|
T Consensus 230 ~~~ 232 (351)
T PRK11432 230 SRF 232 (351)
T ss_pred chH
Confidence 444
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=388.14 Aligned_cols=225 Identities=30% Similarity=0.455 Sum_probs=191.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CcceEEECCccCCC--CCh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-----DSGHVLLDNIELPK--FKL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~~~ 1111 (1283)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999974 3599999999999999999999999999999999999997 48999999998853 344
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCCC-C-C----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQG-G-A----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~-~-~----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
..+|++++||||++.+|+.|++||+.++... . . .++.+.++++.+++.+.+ ++.+++ ...+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHH
Confidence 5678999999999999999999999875211 1 1 134566677777764433 233444 3458999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999866 999999999999999999999
Q ss_pred HhccCchhH
Q 000789 1265 MKITDGAYA 1273 (1283)
Q Consensus 1265 l~~~~g~y~ 1273 (1283)
.+.+...|.
T Consensus 237 ~~~~~~~~~ 245 (254)
T PRK14273 237 FFNPKNTKT 245 (254)
T ss_pred HhCCCChHH
Confidence 875455443
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=403.30 Aligned_cols=218 Identities=28% Similarity=0.461 Sum_probs=189.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 3589999999999999999999999999999999999999999999999999877653 6789
Q ss_pred EEEccCCCCCh-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHH
Q 000789 1119 GLVSQEPVLFN-ETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiAR 1192 (1283)
+||||++.+|. .|++||+.|+.. ...+ ++++.++++..++.++.. ....+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHHH
Confidence 99999999995 699999998632 1122 234556666666655443 344589999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhccC
Q 000789 1193 AVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITD 1269 (1283)
Q Consensus 1193 All~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~~ 1269 (1283)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++.
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998754 7899999999998765 99999999999999999999998766
Q ss_pred chh
Q 000789 1270 GAY 1272 (1283)
Q Consensus 1270 g~y 1272 (1283)
..|
T Consensus 228 ~~~ 230 (353)
T TIGR03265 228 TPF 230 (353)
T ss_pred CHH
Confidence 555
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=391.57 Aligned_cols=214 Identities=31% Similarity=0.553 Sum_probs=188.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
-|+++||+++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999732 3599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCC--CCChhhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHH
Q 000789 1119 GLVSQEP--VLFNETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIA 1191 (1283)
Q Consensus 1119 ~~V~Qdp--~Lf~gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiA 1191 (1283)
+||||+| .+|..|++||+.++.. ...+ ++++.++++.+++.++..+.| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6888999999987521 1122 245677788888876655544 37999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHH
Q 000789 1192 RAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1192 RAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
|||+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999999875 47899999999999854 9999999999999999987653
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-43 Score=403.39 Aligned_cols=208 Identities=31% Similarity=0.507 Sum_probs=182.3
Q ss_pred cccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHH----hcceEEEccCCCCCh-
Q 000789 1055 VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWL----RQQMGLVSQEPVLFN- 1129 (1283)
Q Consensus 1055 ~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l----R~~i~~V~Qdp~Lf~- 1129 (1283)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+.+.+...+ |++++||||++.+|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 458999999999999999999999999999999999999999999999999999988887 789999999999997
Q ss_pred hhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000789 1130 ETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLD 1204 (1283)
Q Consensus 1130 gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLD 1204 (1283)
.|++||+.++.. ...+ .+++.++++.+++.++..+.| .+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 599999987521 1122 345677777777766655444 489999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhccCchhH
Q 000789 1205 EATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITDGAYA 1273 (1283)
Q Consensus 1205 EaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~ 1273 (1283)
||||+||+.+.+.+++.+.++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++|+++++...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999998874 37899999999998654 999999999999999999999876544443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=402.33 Aligned_cols=221 Identities=33% Similarity=0.534 Sum_probs=191.4
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.++. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 3589999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhc
Q 000789 454 GLVSQEPILFA-TSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILK 530 (1283)
Q Consensus 454 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~ 530 (1283)
|||+|++.+|+ .||+|||.|+... .+..+.. ..+++.++.+ |++......+.+||||||||++|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999996 5999999997432 1222221 1234455555 67767777888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCCChh
Q 000789 531 NPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPY 606 (1283)
Q Consensus 531 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~ 606 (1283)
+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...|
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 9999999999999999999999999998754 6899999999999865 99999999999999999999998755444
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=393.62 Aligned_cols=218 Identities=34% Similarity=0.560 Sum_probs=185.3
Q ss_pred EEEEEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCC--hHHHh
Q 000789 1040 IELRCVSFKYPTRP--DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK--LSWLR 1115 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~--~~~lR 1115 (1283)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 88999999997421 136999999999999999999999999999999999999999999999999997754 45788
Q ss_pred cceEEEccCC--CCChhhHHHHHhcCCC-CCCCHH----HHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHH
Q 000789 1116 QQMGLVSQEP--VLFNETIRTNIAYGKQ-GGATEE----EIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRI 1188 (1283)
Q Consensus 1116 ~~i~~V~Qdp--~Lf~gTIreNl~~g~~-~~~sd~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1188 (1283)
++|+||||+| .+|+.|++||+.++.. .+.+.+ ++.++++.+++. +.+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 5789999999987521 123433 345556555553 00223344568999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHh-hcCEEEEEeCCEEEEecChHHHH
Q 000789 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIK-NADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1189 aiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||||++|++|++++.|++++++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998753 789999999999885 49999999999999999999987
Q ss_pred h
Q 000789 1266 K 1266 (1283)
Q Consensus 1266 ~ 1266 (1283)
+
T Consensus 234 ~ 234 (287)
T PRK13637 234 K 234 (287)
T ss_pred h
Confidence 5
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=392.16 Aligned_cols=217 Identities=33% Similarity=0.559 Sum_probs=186.9
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++||+++|++....++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743224599999999999999999999999999999999999999999999999999887777888999
Q ss_pred EEEccCCC--CCcccHHHHHhcCCCC--CCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000789 454 GLVSQEPI--LFATSLRENIAYGKEN--ATDQ----EIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIA 525 (1283)
Q Consensus 454 ~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiA 525 (1283)
+||+|+|. ++..||+|||.++... .+.+ ++.++++.. |++........+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELV-----------GMQDFKEREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC-----------CCHhHhhCCcccCCHHHHHHHHHH
Confidence 99999983 5567999999987432 2222 233344444 444444555679999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcC
Q 000789 526 RAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 526 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998864 7899999999999877999999999999999999988764
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=383.74 Aligned_cols=210 Identities=38% Similarity=0.622 Sum_probs=179.0
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCC-----CCCCceEEECCcccCCCC--HH
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFY-----DPDAGEVLIDGIDIKKLQ--LK 447 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~-----~~~~G~i~~~g~~~~~~~--~~ 447 (1283)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 36999999999999999999999999999999999999 999999999999987766 55
Q ss_pred HHhcccEEEccCCCCCcccHHHHHhcCCCCC---C----HHHHHHHHHHhcHHHHHHhCCCCccccccCC--CCCCChHH
Q 000789 448 WIREKIGLVSQEPILFATSLRENIAYGKENA---T----DQEIRTAIELANAAKFIDKLPKGLDTMAGEH--GTQLSGGQ 518 (1283)
Q Consensus 448 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~--g~~LSgGq 518 (1283)
.++++++|++|++.+|..|++||+.++.... . ++++.++++.. |++...... +.+|||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~~LSgG~ 146 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKA-----------ALWDEVKDRLHALGLSGGQ 146 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHc-----------CCChHHhccCCcccCCHHH
Confidence 6788999999999999789999998753211 1 12233333333 444333333 57999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhH
Q 000789 519 KQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDE 597 (1283)
Q Consensus 519 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~ 597 (1283)
|||++|||||+++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999999999999999999999998655899999999999875 99999999999999998765
Q ss_pred H
Q 000789 598 L 598 (1283)
Q Consensus 598 l 598 (1283)
+
T Consensus 227 ~ 227 (227)
T cd03260 227 I 227 (227)
T ss_pred C
Confidence 3
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=402.20 Aligned_cols=212 Identities=35% Similarity=0.561 Sum_probs=181.2
Q ss_pred CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHH----hcccEEEccCCCCCcc
Q 000789 390 VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWI----REKIGLVSQEPILFAT 465 (1283)
Q Consensus 390 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~~ 465 (1283)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++...+...+ |++|+||+|++++|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 458999999999999999999999999999999999999999999999999999888777 7899999999999975
Q ss_pred -cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000789 466 -SLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATS 542 (1283)
Q Consensus 466 -ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts 542 (1283)
||+|||.++.+. .+.++..+ .+.+.++.+ |++...++.+.+|||||||||+|||||+.+|+|||||||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~v--gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKE-----KALELLKLV--GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999999986432 12222111 112333333 55555666777999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCCChhHH
Q 000789 543 ALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608 (1283)
Q Consensus 543 ~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~ 608 (1283)
+||+.+.+.+++.+.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.++...|..
T Consensus 159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 227 (363)
T TIGR01186 159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVE 227 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHHH
Confidence 9999999999999998753 7899999999998755 9999999999999999999998875555543
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=373.56 Aligned_cols=203 Identities=34% Similarity=0.608 Sum_probs=182.8
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcc
Q 000789 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQ 1117 (1283)
Q Consensus 1038 g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1117 (1283)
+.|+++|++++|+.. ..++++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|++
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 569999999999743 2369999999999999999999999999999999999999999999999999988888888999
Q ss_pred eEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccC
Q 000789 1118 MGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKN 1197 (1283)
Q Consensus 1118 i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~ 1197 (1283)
++||||+|.+|++|++||+.+.. ..+++++.++++ +......|||||+||++||||++++
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred EEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999997642 345555554443 2345678999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecCh
Q 000789 1198 PKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSH 1261 (1283)
Q Consensus 1198 p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~ 1261 (1283)
|++|||||||++||+++...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999998778999999999999988999999999999998874
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=385.42 Aligned_cols=223 Identities=30% Similarity=0.496 Sum_probs=189.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCC-----cceEEECCccCCCC--ChH
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD-----SGHVLLDNIELPKF--KLS 1112 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~-----~G~I~idG~di~~~--~~~ 1112 (1283)
|+++||+++|++ .++++|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999974 35999999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHhcceEEEccCCCCChhhHHHHHhcCCC-CC-CC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHH
Q 000789 1113 WLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GG-AT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQ 1186 (1283)
Q Consensus 1113 ~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~-~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1186 (1283)
.+|++++||||++.+|..|++||+.++.. .. .+ ++++.++++..++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 67889999999999999999999986421 11 12 234566677777653331 1223345689999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHH
Q 000789 1187 RIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1187 RlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998767899999999998865 9999999999999999999998
Q ss_pred hccCchh
Q 000789 1266 KITDGAY 1272 (1283)
Q Consensus 1266 ~~~~g~y 1272 (1283)
..+...+
T Consensus 232 ~~~~~~~ 238 (247)
T TIGR00972 232 TNPKEKR 238 (247)
T ss_pred hCCCChH
Confidence 6544443
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=401.53 Aligned_cols=225 Identities=37% Similarity=0.614 Sum_probs=190.9
Q ss_pred EEEEEEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHH---Hh
Q 000789 375 IELRDVYFRYPARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW---IR 450 (1283)
Q Consensus 375 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r 450 (1283)
|+++||+|+|++.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 346999999999999999999999999999999999999999999999999998876543 47
Q ss_pred cccEEEccCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000789 451 EKIGLVSQEPILFA-TSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARA 527 (1283)
Q Consensus 451 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARa 527 (1283)
++||||+|++.+|. .|++||+.++.. ..+.++..+ .+.+.++.+ |++......+.+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 88999999999986 599999988632 122222211 223455555 66666667778999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCCC
Q 000789 528 ILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEG 604 (1283)
Q Consensus 528 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~ 604 (1283)
|+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+..
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 234 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKH 234 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 9999999999999999999999999999998853 6899999999999876 999999999999999999999876443
Q ss_pred hh
Q 000789 605 PY 606 (1283)
Q Consensus 605 ~~ 606 (1283)
.+
T Consensus 235 ~~ 236 (343)
T PRK11153 235 PL 236 (343)
T ss_pred HH
Confidence 33
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=385.36 Aligned_cols=219 Identities=30% Similarity=0.492 Sum_probs=187.1
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCceEEECCcccCCCCHHHHh
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD---PDAGEVLIDGIDIKKLQLKWIR 450 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~i~~~g~~~~~~~~~~~r 450 (1283)
.|+++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.+||+++.+.+....|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999973 369999999999999999999999999999999999985 6999999999999888777888
Q ss_pred cccEEEccCCCCCcccHHHHHhcCCCC--C------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000789 451 EKIGLVSQEPILFATSLRENIAYGKEN--A------TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRI 522 (1283)
Q Consensus 451 ~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri 522 (1283)
+.++|+||++.+|+.|++||+.++... . .++++.++++..++.+++ .+...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-------KDKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh-------hHHhcCCcccCCHHHHHHH
Confidence 899999999999999999999876311 0 011233333333332222 2335667789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 523 AIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 523 aiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
+|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999998778999999999999865 999999999999999999998765
Q ss_pred C
Q 000789 602 P 602 (1283)
Q Consensus 602 ~ 602 (1283)
+
T Consensus 232 ~ 232 (246)
T PRK14269 232 P 232 (246)
T ss_pred C
Confidence 3
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=393.97 Aligned_cols=217 Identities=28% Similarity=0.478 Sum_probs=184.3
Q ss_pred EEEEEEEEECCCCCC--cccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCC----CChHH
Q 000789 1040 IELRCVSFKYPTRPD--VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPK----FKLSW 1113 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~--~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~----~~~~~ 1113 (1283)
|+++||+|+|+.... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974311 359999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEccCC--CCChhhHHHHHhcCCC-CCCCHH----HHHHHHHHhChH-HHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1114 LRQQMGLVSQEP--VLFNETIRTNIAYGKQ-GGATEE----EIIAATEASNAH-NFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1114 lR~~i~~V~Qdp--~Lf~gTIreNl~~g~~-~~~sd~----ei~~al~~a~l~-~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
+|+.++||+|+| .+|..|+.||+.++.. ...+.+ ++.++++.+++. ++ ......+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF-----------WEKSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh-----------ccCCcccCCHHHH
Confidence 899999999998 7899999999987632 123333 344555555552 22 2334468999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHh-hcCEEEEEeCCEEEEecChHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIK-NADIIAVVKNGVIAEQGSHDA 1263 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~e 1263 (1283)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998875 4789999999999885 499999999999999999999
Q ss_pred HHhc
Q 000789 1264 LMKI 1267 (1283)
Q Consensus 1264 Ll~~ 1267 (1283)
+...
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8753
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=382.26 Aligned_cols=212 Identities=34% Similarity=0.504 Sum_probs=181.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999974 359999999999999999999999999999999999999999999999999876553 367899
Q ss_pred EEccCCCCCh-hhHHHHHhcCCCC-CC----C----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHH
Q 000789 1120 LVSQEPVLFN-ETIRTNIAYGKQG-GA----T----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIA 1189 (1283)
Q Consensus 1120 ~V~Qdp~Lf~-gTIreNl~~g~~~-~~----s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1189 (1283)
||||+|.+|. .|++||+.++... .. + ++++.++++..++.++.. ....+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-----------RYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHH
Confidence 9999999885 6999999875210 11 1 123455566655544433 334589999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHh
Q 000789 1190 IARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1190 iARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1266 (1283)
|||||+++|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999998765 99999999999999999999986
Q ss_pred c
Q 000789 1267 I 1267 (1283)
Q Consensus 1267 ~ 1267 (1283)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 4
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=379.06 Aligned_cols=212 Identities=26% Similarity=0.441 Sum_probs=181.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++||+++|++. ..++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5789999999742 146999999999999999999999999999999999999999999999999987643 56788999
Q ss_pred EEccCCCCC-hhhHHHHHhcCCC-CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1120 LVSQEPVLF-NETIRTNIAYGKQ-GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qdp~Lf-~gTIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
||+|++.+| ..|++||+.+... ...+. +++.++++..++.+.. ++. ..+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------NKR----ARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------hCh----hhhCCHHHHHHHHHHHH
Confidence 999999988 6799999976311 11222 3455566666554433 222 34799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999998777999999999999875 999999999999999999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=384.90 Aligned_cols=214 Identities=36% Similarity=0.567 Sum_probs=182.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCC---hHHHhc
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK---LSWLRQ 1116 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~---~~~lR~ 1116 (1283)
|+++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4789999999741 46999999999999999999999999999999999999999999999999998776 456788
Q ss_pred ceEEEccCCCCCh-hhHHHHHhcCCCC-------------CCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCCh
Q 000789 1117 QMGLVSQEPVLFN-ETIRTNIAYGKQG-------------GATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSG 1182 (1283)
Q Consensus 1117 ~i~~V~Qdp~Lf~-gTIreNl~~g~~~-------------~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1182 (1283)
.++|+||++.+|. .|++||+.++... ...++++.++++..++.+ .....+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-----------KAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-----------hhCCCcccCCH
Confidence 9999999998886 6999999864211 011233445555555433 23445568999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhh-cCEEEEEeCCEEEEec
Q 000789 1183 GQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259 (1283)
Q Consensus 1183 GQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1259 (1283)
|||||++||||++++|+|||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999875 37899999999999985 9999999999999999
Q ss_pred ChHHHHh
Q 000789 1260 SHDALMK 1266 (1283)
Q Consensus 1260 t~~eLl~ 1266 (1283)
+++++.+
T Consensus 228 ~~~~~~~ 234 (241)
T cd03256 228 PPAELTD 234 (241)
T ss_pred CHHHhhH
Confidence 9998743
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=389.69 Aligned_cols=220 Identities=32% Similarity=0.495 Sum_probs=186.8
Q ss_pred EEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHH----hc
Q 000789 1041 ELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWL----RQ 1116 (1283)
Q Consensus 1041 ~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l----R~ 1116 (1283)
.++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777763 358999999999999999999999999999999999999999999999999987765443 46
Q ss_pred ceEEEccCCCCC-hhhHHHHHhcCCC-CCC----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHH
Q 000789 1117 QMGLVSQEPVLF-NETIRTNIAYGKQ-GGA----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAI 1190 (1283)
Q Consensus 1117 ~i~~V~Qdp~Lf-~gTIreNl~~g~~-~~~----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlai 1190 (1283)
+++|+||++.+| +.|++||+.++.. ... .++++.++++..++.+++...| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 899999999988 5699999976411 111 1345667777777776665544 3799999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1191 ARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1191 ARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
||||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++++.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999998753 7899999999998865 999999999999999999999876
Q ss_pred cCchhHH
Q 000789 1268 TDGAYAS 1274 (1283)
Q Consensus 1268 ~~g~y~~ 1274 (1283)
+...|.+
T Consensus 252 ~~~~~~~ 258 (269)
T cd03294 252 PANDYVR 258 (269)
T ss_pred cCcHHHH
Confidence 5555544
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=391.88 Aligned_cols=221 Identities=33% Similarity=0.544 Sum_probs=185.7
Q ss_pred EEEEEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCC----ChHH
Q 000789 1040 IELRCVSFKYPTRP--DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF----KLSW 1113 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~----~~~~ 1113 (1283)
|+++||+++|++.+ ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999997432 13699999999999999999999999999999999999999999999999998653 3457
Q ss_pred HhcceEEEccCC--CCChhhHHHHHhcCCCC-CCCHHHHHHHHHHhChHHHHHhCCCCccc-ccCCCCCCCChhHHHHHH
Q 000789 1114 LRQQMGLVSQEP--VLFNETIRTNIAYGKQG-GATEEEIIAATEASNAHNFISALPHGYET-NVGERGVQLSGGQKQRIA 1189 (1283)
Q Consensus 1114 lR~~i~~V~Qdp--~Lf~gTIreNl~~g~~~-~~sd~ei~~al~~a~l~~~I~~lp~Gldt-~vge~G~~LSgGQrQRla 1189 (1283)
+|++|+||||+| .+|..|+.|||.++... ..+.++..+. +.+.+..+ |+++ .......+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 899999999998 68889999999876211 2344333321 12333333 5553 234566789999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHh-hcCEEEEEeCCEEEEecChHHHHh
Q 000789 1190 IARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIK-NADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1190 iARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~ 1266 (1283)
|||||+.+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 3789999999999885 599999999999999999999876
Q ss_pred c
Q 000789 1267 I 1267 (1283)
Q Consensus 1267 ~ 1267 (1283)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 4
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=383.60 Aligned_cols=222 Identities=31% Similarity=0.529 Sum_probs=189.0
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHH-hccc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWI-REKI 453 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 453 (1283)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 359999999999999999999999999999999999999999999999999987776544 5679
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCCCHHHH-------HHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000789 454 GLVSQEPILFAT-SLRENIAYGKENATDQEI-------RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIA 525 (1283)
Q Consensus 454 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~-------~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiA 525 (1283)
+|++|++.+|++ |++||+.++........+ ........+++.++.+ |++........+||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999986 999999886432110000 0011112345566666 787777888899999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 526 RAILKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 526 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 99999999999999999999999999999999876 57899999999999876 999999999999999999988654
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=398.12 Aligned_cols=218 Identities=32% Similarity=0.517 Sum_probs=188.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+.+. .+++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3889999999974 359999999999999999999999999999999999999999999999999987653 46789
Q ss_pred EEEccCCCCCh-hhHHHHHhcCCCC-----CCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHH
Q 000789 1119 GLVSQEPVLFN-ETIRTNIAYGKQG-----GAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRI 1188 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~-gTIreNl~~g~~~-----~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1188 (1283)
+||||++.+|. .|++||+.++... ..+ ++++.++++..++.++..+.| ..||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHH
Confidence 99999999996 5999999976321 122 235566777777765544433 48999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHH
Q 000789 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1189 aiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
+|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++.
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998764 6899999999998766 9999999999999999999998
Q ss_pred hccCchh
Q 000789 1266 KITDGAY 1272 (1283)
Q Consensus 1266 ~~~~g~y 1272 (1283)
+++...|
T Consensus 226 ~~p~~~~ 232 (353)
T PRK10851 226 REPATRF 232 (353)
T ss_pred hCccchH
Confidence 8655444
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=386.46 Aligned_cols=220 Identities=30% Similarity=0.502 Sum_probs=188.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCcceEEECCccCCC--CCh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLDNIELPK--FKL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~~ 1111 (1283)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4999999999973 359999999999999999999999999999999999975 589999999999865 345
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC-CCC-----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA-----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~-----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
..+|++++||||++.+|..|++||+.++.. ... .++++.++++.+++.+.+.. .......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 577899999999999999999999986421 111 23456677777777554322 23445568999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
||++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998667899999999999865 999999999999999999999
Q ss_pred Hhcc
Q 000789 1265 MKIT 1268 (1283)
Q Consensus 1265 l~~~ 1268 (1283)
.+.+
T Consensus 236 ~~~~ 239 (253)
T PRK14242 236 FTRP 239 (253)
T ss_pred HcCC
Confidence 8653
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=402.31 Aligned_cols=214 Identities=24% Similarity=0.425 Sum_probs=191.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++...+|++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999974 4699999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEccCCCC-ChhhHHHHHhcCCCC---------CCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHH
Q 000789 1119 GLVSQEPVL-FNETIRTNIAYGKQG---------GATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRI 1188 (1283)
Q Consensus 1119 ~~V~Qdp~L-f~gTIreNl~~g~~~---------~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1188 (1283)
+||||++.+ |+.|++||+.++..+ ...++.+.++++.+++.++..+ ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 688999999876321 1123457888888888766533 2347999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHh
Q 000789 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1189 aiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1266 (1283)
+|||||+++|+||||||||++||+.+...+++.|+++. +++|+|+++|+++.+.. |||+++|++|++++.|+++|++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 47899999999999955 99999999999999999999875
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=388.96 Aligned_cols=220 Identities=33% Similarity=0.583 Sum_probs=186.6
Q ss_pred EEEEEEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCC--HHHHh
Q 000789 375 IELRDVYFRYPARP--EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ--LKWIR 450 (1283)
Q Consensus 375 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~--~~~~r 450 (1283)
|+++||+|+|++.. .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 136999999999999999999999999999999999999999999999999997654 35678
Q ss_pred cccEEEccCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc--ccccCCCCCCChHHHHHHHH
Q 000789 451 EKIGLVSQEP--ILFATSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLD--TMAGEHGTQLSGGQKQRIAI 524 (1283)
Q Consensus 451 ~~i~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~--t~~~~~g~~LSgGqkqriai 524 (1283)
++||||||+| .+|+.|++|||.++.. ..+.++..+.+ .+.++.+ |++ +.....+..||||||||++|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRV-----KRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHH-----HHHHHHc--CCCchhhccCCcccCCHHHHHHHHH
Confidence 8999999998 5788999999998632 12333332221 2334443 554 45677788999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEeEecChhHHhcC
Q 000789 525 ARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIR-NADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 525 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998853 689999999999985 5999999999999999999998754
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=378.79 Aligned_cols=204 Identities=33% Similarity=0.519 Sum_probs=175.8
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChH---HHhc
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLS---WLRQ 1116 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR~ 1116 (1283)
|+++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999642 23599999999999999999999999999999999999999999999999998776543 4788
Q ss_pred ceEEEccCCCCCh-hhHHHHHhcCCC-CC----CCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHH
Q 000789 1117 QMGLVSQEPVLFN-ETIRTNIAYGKQ-GG----ATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAI 1190 (1283)
Q Consensus 1117 ~i~~V~Qdp~Lf~-gTIreNl~~g~~-~~----~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlai 1190 (1283)
+++|+||+|.+|. .|++||+.++.. .. ..++++.++++..++.++....| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999886 599999986411 01 12355677788777766654443 3799999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEE
Q 000789 1191 ARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVI 1255 (1283)
Q Consensus 1191 ARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~I 1255 (1283)
||||+++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 47899999999999976 999999999975
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=380.41 Aligned_cols=224 Identities=35% Similarity=0.636 Sum_probs=190.7
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000789 454 GLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLD-TMAGEHGTQLSGGQKQRIAIARAILKNP 532 (1283)
Q Consensus 454 ~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqkqriaiARal~~~~ 532 (1283)
+|++|++.+|+.|++||+.++.......+ ..+.+.++.+ |++ ......+.+||||||||++||||++++|
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKN-------VDVEYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHH-------HHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999997642111110 1122344444 554 3455677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCCChhHHH
Q 000789 533 KILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQL 609 (1283)
Q Consensus 533 ~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 609 (1283)
++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+...|.+.
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 230 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKL 230 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHHH
Confidence 99999999999999999999999998753 7899999999999875 99999999999999999999986544445443
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=388.96 Aligned_cols=217 Identities=32% Similarity=0.544 Sum_probs=191.6
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999743 34699999999999999999999999999999999999999999999999999888877888999
Q ss_pred EEEccCC--CCChhhHHHHHhcCCC-CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHH
Q 000789 1119 GLVSQEP--VLFNETIRTNIAYGKQ-GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIA 1191 (1283)
Q Consensus 1119 ~~V~Qdp--~Lf~gTIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiA 1191 (1283)
+|+||+| .+++.|++|||.++.. ...+. +++.++++..++.+++...| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 5678899999987521 11232 34677777778877766554 37999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhc
Q 000789 1192 RAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1192 RAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
|||+.+|+||||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998764 7899999999999988999999999999999999998763
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=385.39 Aligned_cols=221 Identities=31% Similarity=0.512 Sum_probs=190.0
Q ss_pred cccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCcceEEECCccCCC--C
Q 000789 1037 GGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLDNIELPK--F 1109 (1283)
Q Consensus 1037 ~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~ 1109 (1283)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 356999999999974 359999999999999999999999999999999999986 589999999999853 4
Q ss_pred ChHHHhcceEEEccCCCCChhhHHHHHhcCCC--CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChh
Q 000789 1110 KLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ--GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGG 1183 (1283)
Q Consensus 1110 ~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1183 (1283)
+...+|++++|+||++.+|+.|++||+.++.. ...+. +++.++++.+++.+.+. ........+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 56678999999999999999999999986521 11222 44666777776643322 2344556689999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChH
Q 000789 1184 QKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHD 1262 (1283)
Q Consensus 1184 QrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~ 1262 (1283)
||||++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999999865 9999999999999999999
Q ss_pred HHHhc
Q 000789 1263 ALMKI 1267 (1283)
Q Consensus 1263 eLl~~ 1267 (1283)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 99865
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=382.52 Aligned_cols=218 Identities=28% Similarity=0.474 Sum_probs=183.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHH-hcce
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWL-RQQM 1118 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~i 1118 (1283)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999973 359999999999999999999999999999999999999999999999999988776554 5789
Q ss_pred EEEccCCCCChh-hHHHHHhcCCCCC-C----------CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHH
Q 000789 1119 GLVSQEPVLFNE-TIRTNIAYGKQGG-A----------TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQ 1186 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~g-TIreNl~~g~~~~-~----------sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1186 (1283)
+||||++.+|.+ |++||+.++.... . ..++..+ .+.++++.+ |++.........|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARE-----RAEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHH-----HHHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 999999999876 9999998652110 0 1111111 123344443 4554455566789999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1187 RIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1187 RlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
|++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999999999999999875 57899999999999976 999999999999999999998
Q ss_pred Hhc
Q 000789 1265 MKI 1267 (1283)
Q Consensus 1265 l~~ 1267 (1283)
...
T Consensus 231 ~~~ 233 (236)
T cd03219 231 RNN 233 (236)
T ss_pred ccC
Confidence 753
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=399.80 Aligned_cols=218 Identities=33% Similarity=0.561 Sum_probs=187.5
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcc
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREK 452 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 452 (1283)
..|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRH 87 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 35999999999963 3589999999999999999999999999999999999999999999999999877654 468
Q ss_pred cEEEccCCCCCcc-cHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000789 453 IGLVSQEPILFAT-SLRENIAYGKEN--ATD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIA 525 (1283)
Q Consensus 453 i~~v~Q~~~l~~~-ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiA 525 (1283)
||||+|++.+|+. ||+|||.|+... .+. +++.++++..+ ++......+.+|||||||||+||
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~p~~LSgGq~QRVaLA 156 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQ-----------LEEFAQRKPHQLSGGQQQRVAIA 156 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcC-----------CchhhhCChhhCCHHHHHHHHHH
Confidence 9999999999976 999999987531 122 23344444444 44444455579999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCC
Q 000789 526 RAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDP 602 (1283)
Q Consensus 526 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 602 (1283)
|||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|++++++.++
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999998764 6899999999999765 9999999999999999999998876
Q ss_pred CChh
Q 000789 603 EGPY 606 (1283)
Q Consensus 603 ~~~~ 606 (1283)
...|
T Consensus 237 ~~~~ 240 (375)
T PRK09452 237 KNLF 240 (375)
T ss_pred ccHH
Confidence 5444
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=387.46 Aligned_cols=218 Identities=31% Similarity=0.500 Sum_probs=190.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
-|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334699999999999999999999999999999999999999999999999999887777889999
Q ss_pred EEEccCC--CCChhhHHHHHhcCCC-CCCCHH----HHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHH
Q 000789 1119 GLVSQEP--VLFNETIRTNIAYGKQ-GGATEE----EIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIA 1191 (1283)
Q Consensus 1119 ~~V~Qdp--~Lf~gTIreNl~~g~~-~~~sd~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiA 1191 (1283)
+||||+| .++..|+.|||.++.. ...+++ ++.++++.+++.++.... ...||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 4778899999986521 123333 345677777776654432 357999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhc
Q 000789 1192 RAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1192 RAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
|||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998754 7899999999999988999999999999999999998864
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=386.54 Aligned_cols=224 Identities=30% Similarity=0.472 Sum_probs=191.2
Q ss_pred cccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CcceEEECCccCCC--C
Q 000789 1037 GGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-----DSGHVLLDNIELPK--F 1109 (1283)
Q Consensus 1037 ~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~ 1109 (1283)
.+.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|++||.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 357999999999974 3599999999999999999999999999999999999975 89999999999864 3
Q ss_pred ChHHHhcceEEEccCCCCChhhHHHHHhcCCC-CCC--C----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCCh
Q 000789 1110 KLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA--T----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSG 1182 (1283)
Q Consensus 1110 ~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~--s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1182 (1283)
+...+|+.++||||+|.+|..|++||+.++.. .+. + ++++.++++.+++.+++. ......+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 45678899999999999998999999986421 111 1 244667777777755432 123345568999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecCh
Q 000789 1183 GQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSH 1261 (1283)
Q Consensus 1183 GQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~ 1261 (1283)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988777899999999999965 999999999999999999
Q ss_pred HHHHhccCc
Q 000789 1262 DALMKITDG 1270 (1283)
Q Consensus 1262 ~eLl~~~~g 1270 (1283)
+++...+..
T Consensus 247 ~~~~~~~~~ 255 (267)
T PRK14235 247 EKMFTNPDD 255 (267)
T ss_pred HHHHhCCCC
Confidence 999864333
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=383.13 Aligned_cols=213 Identities=34% Similarity=0.534 Sum_probs=181.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCCh---HHHhc
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKL---SWLRQ 1116 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~---~~lR~ 1116 (1283)
|+++||+++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 789999999972 2359999999999999999999999999999999999999999999999999877653 44688
Q ss_pred ceEEEccCCCCCh-hhHHHHHhcCCCC-------------CCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCCh
Q 000789 1117 QMGLVSQEPVLFN-ETIRTNIAYGKQG-------------GATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSG 1182 (1283)
Q Consensus 1117 ~i~~V~Qdp~Lf~-gTIreNl~~g~~~-------------~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1182 (1283)
+++||||++.+|. .|++||+.++... ...++++.++++..++.++ ......+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADK-----------AYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCH
Confidence 9999999998886 6999999865211 0112345555555555443 3334568999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEec
Q 000789 1183 GQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259 (1283)
Q Consensus 1183 GQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1259 (1283)
|||||++|||||+++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998753 7899999999999865 9999999999999999
Q ss_pred ChHHHH
Q 000789 1260 SHDALM 1265 (1283)
Q Consensus 1260 t~~eLl 1265 (1283)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999874
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=368.56 Aligned_cols=218 Identities=31% Similarity=0.492 Sum_probs=190.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCc---cCCCCChHHHh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI---ELPKFKLSWLR 1115 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~---di~~~~~~~lR 1115 (1283)
.|+++|++..|+. .++++|||++|+.||.+|+.||||||||||+++|+|+..|++|+|.+||. |.++.+ .-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 4788999999974 46899999999999999999999999999999999999999999999999 766633 334
Q ss_pred cceEEEccCCCCC-hhhHHHHHhcCCCC---CC----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHH
Q 000789 1116 QQMGLVSQEPVLF-NETIRTNIAYGKQG---GA----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQR 1187 (1283)
Q Consensus 1116 ~~i~~V~Qdp~Lf-~gTIreNl~~g~~~---~~----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1187 (1283)
++||+|+|+..|| +.||++||+||..- .. ...++.+.++.+++.++-+..|. +||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~-----------QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA-----------QLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCch-----------hcChHHHHH
Confidence 7899999999988 67999999999521 12 23456667788888777666663 899999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1188 IAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1188 laiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
+||||||..+|++|+||||.++||++-.+.+.+.|++... ++|+++|||+.+.+.. ||||+||++|+|.+.|+|+|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999998753 7899999999988765 999999999999999999999
Q ss_pred HhccCchh
Q 000789 1265 MKITDGAY 1272 (1283)
Q Consensus 1265 l~~~~g~y 1272 (1283)
...+++.|
T Consensus 226 ~~~P~s~f 233 (345)
T COG1118 226 YDHPASRF 233 (345)
T ss_pred hcCCCccc
Confidence 88766654
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=394.50 Aligned_cols=226 Identities=27% Similarity=0.354 Sum_probs=189.2
Q ss_pred cEEEEEEEEECCCCC----------CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCC
Q 000789 1039 AIELRCVSFKYPTRP----------DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPK 1108 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~----------~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~ 1108 (1283)
-|+++|++++|+.+. ...+++||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 589999999997421 2469999999999999999999999999999999999999999999999999988
Q ss_pred CChH---HHhcceEEEccCC--CCC-hhhHHHHHhcCC---CCCCCHHH----HHHHHHHhChHHHHHhCCCCcccccCC
Q 000789 1109 FKLS---WLRQQMGLVSQEP--VLF-NETIRTNIAYGK---QGGATEEE----IIAATEASNAHNFISALPHGYETNVGE 1175 (1283)
Q Consensus 1109 ~~~~---~lR~~i~~V~Qdp--~Lf-~gTIreNl~~g~---~~~~sd~e----i~~al~~a~l~~~I~~lp~Gldt~vge 1175 (1283)
++.. .+|++|+||+|+| .|+ ..||.|||.++. ....+.++ +.++++.+++.+ .....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence 8754 3678999999999 466 579999996431 11234333 344555555521 11233
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeC
Q 000789 1176 RGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKN 1252 (1283)
Q Consensus 1176 ~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~ 1252 (1283)
...+||||||||++|||||+.+|++||+||||++||+.+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 3458999999999999999999999999999999999999999999998754 7899999999999986 999999999
Q ss_pred CEEEEecChHHHHhccCchhHH
Q 000789 1253 GVIAEQGSHDALMKITDGAYAS 1274 (1283)
Q Consensus 1253 G~Ive~Gt~~eLl~~~~g~y~~ 1274 (1283)
|+|+|.|+++++++++...|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999865666755
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=379.68 Aligned_cols=222 Identities=27% Similarity=0.447 Sum_probs=197.1
Q ss_pred CCCcccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHH
Q 000789 1034 SSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW 1113 (1283)
Q Consensus 1034 ~~~~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~ 1113 (1283)
+...+.|+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||
T Consensus 34 ~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g---------- 98 (282)
T cd03291 34 SSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG---------- 98 (282)
T ss_pred CCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----------
Confidence 3345579999999952 3599999999999999999999999999999999999999999999998
Q ss_pred HhcceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1114 LRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1114 lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
.++|+||++.+|+.|++||+.++.. ..+.++.++++.+++.+.+..+|.++++.+++.+.+||||||||++||||
T Consensus 99 ---~i~yv~q~~~l~~~tv~enl~~~~~--~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAra 173 (282)
T cd03291 99 ---RISFSSQFSWIMPGTIKENIIFGVS--YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARA 173 (282)
T ss_pred ---EEEEEeCcccccccCHHHHhhcccc--cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHH
Confidence 3999999999999999999987522 34456677788889999999999999999999999999999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHH-HHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhccCchh
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDAL-ERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAY 1272 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L-~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y 1272 (1283)
|+++|+||||||||++||+++...+.+.+ +...+++|+|+|||+++.+..||++++|++|++++.|+++++.+. ...|
T Consensus 174 L~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~ 252 (282)
T cd03291 174 VYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDF 252 (282)
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHH
Confidence 99999999999999999999999888754 555568899999999999988999999999999999999999874 4455
Q ss_pred HHHH
Q 000789 1273 ASLV 1276 (1283)
Q Consensus 1273 ~~L~ 1276 (1283)
.+.+
T Consensus 253 ~~~~ 256 (282)
T cd03291 253 SSKL 256 (282)
T ss_pred HHHH
Confidence 5443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=399.01 Aligned_cols=219 Identities=30% Similarity=0.490 Sum_probs=190.1
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCc--ceEEECCccCCCCChHHHh
Q 000789 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS--GHVLLDNIELPKFKLSWLR 1115 (1283)
Q Consensus 1038 g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~--G~I~idG~di~~~~~~~lR 1115 (1283)
+.|+++||+++|++ ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++ |+|.+||.++.+.+. .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 56999999999974 359999999999999999999999999999999999999999 999999999987664 46
Q ss_pred cceEEEccCCCCChh-hHHHHHhcCCC-CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHH
Q 000789 1116 QQMGLVSQEPVLFNE-TIRTNIAYGKQ-GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIA 1189 (1283)
Q Consensus 1116 ~~i~~V~Qdp~Lf~g-TIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1189 (1283)
+.|+||+|++.+|.. |++|||.|+.. ...+. +++.++++..++.++..+.| .+||||||||+|
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999954 99999987532 12332 34566677777766655544 489999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC---CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHH
Q 000789 1190 IARAVLKNPKILLLDEATSALDAESERVVQDALERVMV---NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1190 iARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~---~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
|||||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|++++.|+++|+.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999988754 6899999999998765 9999999999999999999999
Q ss_pred hccCchh
Q 000789 1266 KITDGAY 1272 (1283)
Q Consensus 1266 ~~~~g~y 1272 (1283)
+++...|
T Consensus 228 ~~p~~~~ 234 (362)
T TIGR03258 228 DAPADGF 234 (362)
T ss_pred hCcCcHH
Confidence 8755444
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=382.96 Aligned_cols=225 Identities=29% Similarity=0.480 Sum_probs=187.6
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccCC--CC
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIKK--LQ 445 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~ 445 (1283)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 35999999999963 3599999999999999999999999999999999999997 48999999998853 34
Q ss_pred HHHHhcccEEEccCCCCCcccHHHHHhcCCCC---CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 000789 446 LKWIREKIGLVSQEPILFATSLRENIAYGKEN---AT----DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQ 518 (1283)
Q Consensus 446 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 518 (1283)
...+|++|+|++|++.+|+.|++|||.++... .. ++.+.++++.+++.+.+ .......+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV-------KDKLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-------HHHHhCCcccCCHHH
Confidence 45678899999999999989999999986321 11 12233444444332211 223345678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhH
Q 000789 519 KQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDE 597 (1283)
Q Consensus 519 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~ 597 (1283)
|||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998777899999999999865 99999999999999999999
Q ss_pred HhcCCCChhH
Q 000789 598 LIKDPEGPYT 607 (1283)
Q Consensus 598 l~~~~~~~~~ 607 (1283)
+..++...|.
T Consensus 236 ~~~~~~~~~~ 245 (254)
T PRK14273 236 LFFNPKNTKT 245 (254)
T ss_pred HHhCCCChHH
Confidence 9876444443
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=379.67 Aligned_cols=217 Identities=35% Similarity=0.538 Sum_probs=184.9
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChH---HHh
Q 000789 1040 IELRCVSFKYPTRP-DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLS---WLR 1115 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR 1115 (1283)
|+++|++++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997431 12699999999999999999999999999999999999999999999999999876543 357
Q ss_pred cceEEEccCCCCCh-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHH
Q 000789 1116 QQMGLVSQEPVLFN-ETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIA 1189 (1283)
Q Consensus 1116 ~~i~~V~Qdp~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1189 (1283)
+.++|+||++.+|. .|++||+.++.. ...+ .+++.++++..++.+.... ...+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADA-----------YPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 89999999999996 699999976411 1122 3345666666666554433 33589999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHh
Q 000789 1190 IARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1190 iARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1266 (1283)
||||++++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999999875
Q ss_pred c
Q 000789 1267 I 1267 (1283)
Q Consensus 1267 ~ 1267 (1283)
.
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 3
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=384.83 Aligned_cols=226 Identities=28% Similarity=0.413 Sum_probs=189.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CcceEEECCccCC--CCCh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-----DSGHVLLDNIELP--KFKL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~--~~~~ 1111 (1283)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999974 3599999999999999999999999999999999999987 4999999999987 4556
Q ss_pred HHHhcceEEEccCCCCChh-hHHHHHhcCCC-CC--CC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChh
Q 000789 1112 SWLRQQMGLVSQEPVLFNE-TIRTNIAYGKQ-GG--AT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGG 1183 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~g-TIreNl~~g~~-~~--~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1183 (1283)
..+|++++|+||++.+|.. |++||+.++.. .. .+ ++++.++++..++.+.+. ........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 6788999999999999975 99999986421 11 11 234556666666543332 1233455689999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChH
Q 000789 1184 QKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHD 1262 (1283)
Q Consensus 1184 QrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~ 1262 (1283)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777999999999999866 9999999999999999999
Q ss_pred HHHhccCchhHH
Q 000789 1263 ALMKITDGAYAS 1274 (1283)
Q Consensus 1263 eLl~~~~g~y~~ 1274 (1283)
++.+.+...|.+
T Consensus 234 ~~~~~~~~~~~~ 245 (253)
T PRK14267 234 KVFENPEHELTE 245 (253)
T ss_pred HHHhCCCcHHHH
Confidence 998653333433
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=397.12 Aligned_cols=221 Identities=33% Similarity=0.551 Sum_probs=187.7
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++...+. .+++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3789999999963 359999999999999999999999999999999999999999999999999977654 35789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000789 454 GLVSQEPILFAT-SLRENIAYGKEN------ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526 (1283)
Q Consensus 454 ~~v~Q~~~l~~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiAR 526 (1283)
+||+|++.+|+. |++||+.|+... .+.++..+ .+.+.++.+ |++......+.+||||||||++|||
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAr 149 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALAR 149 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 999999999975 999999987431 12222111 122334444 5555556667899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCC
Q 000789 527 AILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPE 603 (1283)
Q Consensus 527 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~ 603 (1283)
||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++.
T Consensus 150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~ 229 (353)
T PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA 229 (353)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998864 6899999999999866 99999999999999999999987754
Q ss_pred Chh
Q 000789 604 GPY 606 (1283)
Q Consensus 604 ~~~ 606 (1283)
..|
T Consensus 230 ~~~ 232 (353)
T PRK10851 230 TRF 232 (353)
T ss_pred chH
Confidence 444
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=388.61 Aligned_cols=220 Identities=33% Similarity=0.553 Sum_probs=188.6
Q ss_pred EEEEEEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCC----CHHH
Q 000789 375 IELRDVYFRYPARP--EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL----QLKW 448 (1283)
Q Consensus 375 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~ 448 (1283)
|+++||+|+|++.. ..++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996422 13699999999999999999999999999999999999999999999999998653 3456
Q ss_pred HhcccEEEccCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHH
Q 000789 449 IREKIGLVSQEP--ILFATSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDT-MAGEHGTQLSGGQKQRIA 523 (1283)
Q Consensus 449 ~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGqkqria 523 (1283)
+|++||||||+| .+|+.|+.|||.++... .+.++..+ .+.+.++.+ |+++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKN-----YAHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999997 68888999999986422 23333322 123456665 7874 567788999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEeEecChhHHhc
Q 000789 524 IARAILKNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIR-NADLIAVVHQGKIVEKGTHDELIK 600 (1283)
Q Consensus 524 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 600 (1283)
|||||+.+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999875 3789999999999986 499999999999999999999876
Q ss_pred C
Q 000789 601 D 601 (1283)
Q Consensus 601 ~ 601 (1283)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 4
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=397.73 Aligned_cols=223 Identities=29% Similarity=0.481 Sum_probs=190.2
Q ss_pred cccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC--ceEEECCcccCCCCHHHH
Q 000789 372 EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA--GEVLIDGIDIKKLQLKWI 449 (1283)
Q Consensus 372 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~--G~i~~~g~~~~~~~~~~~ 449 (1283)
.+.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.+.++ .
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~ 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--H 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--H
Confidence 357999999999963 359999999999999999999999999999999999999999 999999999977665 3
Q ss_pred hcccEEEccCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000789 450 REKIGLVSQEPILFAT-SLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526 (1283)
Q Consensus 450 r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiAR 526 (1283)
++.||||+|++.+|+. ||+|||.|+... .+.++..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLV--GLGDAAAHLPAQLSGGMQQRIAIAR 150 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHH
Confidence 5789999999999976 999999986431 22222221 122344444 6666666777899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC---CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCC
Q 000789 527 AILKNPKILLLDEATSALDAESERIVQDALVKIMT---SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDP 602 (1283)
Q Consensus 527 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~---~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 602 (1283)
||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999998754 6799999999999865 9999999999999999999998875
Q ss_pred CChh
Q 000789 603 EGPY 606 (1283)
Q Consensus 603 ~~~~ 606 (1283)
...|
T Consensus 231 ~~~~ 234 (362)
T TIGR03258 231 ADGF 234 (362)
T ss_pred CcHH
Confidence 4443
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=399.63 Aligned_cols=218 Identities=34% Similarity=0.532 Sum_probs=192.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.+
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999974 3589999999999999999999999999999999999999999999999999876654 5789
Q ss_pred EEEccCCCCCh-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHH
Q 000789 1119 GLVSQEPVLFN-ETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiAR 1192 (1283)
+||+|++.+|. .||+|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||+||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 599999998632 1223 235667788888877776665 379999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhccC
Q 000789 1193 AVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITD 1269 (1283)
Q Consensus 1193 All~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~~ 1269 (1283)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998764 7899999999998765 99999999999999999999998765
Q ss_pred chh
Q 000789 1270 GAY 1272 (1283)
Q Consensus 1270 g~y 1272 (1283)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 544
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=375.81 Aligned_cols=204 Identities=35% Similarity=0.554 Sum_probs=174.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 578999999974 35999999999999999999999999999999999999999999999999987654 3577899
Q ss_pred EEccCCCCCh-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1120 LVSQEPVLFN-ETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qdp~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
||||+|.+|. .|++||+.++.. ...+ ++++.++++..++.++.... ..+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY-----------PHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHHHHH
Confidence 9999998885 699999976421 1112 23455666666665544333 35899999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEec
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1259 (1283)
|+++|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998753 7899999999998866 9999999999998876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=388.99 Aligned_cols=220 Identities=29% Similarity=0.526 Sum_probs=185.9
Q ss_pred EEEEEEEEECCCCCC--CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCC----CCHHH
Q 000789 375 IELRDVYFRYPARPE--VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKK----LQLKW 448 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~--~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----~~~~~ 448 (1283)
|+++||+|+|+.... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974221 259999999999999999999999999999999999999999999999999853 33556
Q ss_pred HhcccEEEccCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 000789 449 IREKIGLVSQEP--ILFATSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLD-TMAGEHGTQLSGGQKQRIA 523 (1283)
Q Consensus 449 ~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqkqria 523 (1283)
+|+++|||+|+| .+|..|+.||+.|+... .+.++..+ .+.+.++.+ |++ ......+.+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 788999999998 78889999999987432 22332221 122344444 553 3456777899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 524 IARAILKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 524 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999999999999875 47899999999999864 999999999999999999998754
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=388.05 Aligned_cols=216 Identities=25% Similarity=0.445 Sum_probs=186.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCC--CCChHHHhc
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELP--KFKLSWLRQ 1116 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~--~~~~~~lR~ 1116 (1283)
-|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 246999999999999999999999999999999999999999999999999984 344567889
Q ss_pred ceEEEccCC--CCChhhHHHHHhcCCC-CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHH
Q 000789 1117 QMGLVSQEP--VLFNETIRTNIAYGKQ-GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIA 1189 (1283)
Q Consensus 1117 ~i~~V~Qdp--~Lf~gTIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1189 (1283)
.++|+||+| .+|+.|++||+.++.. ...+. +.+.++++..++.++. .....+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 999999998 5789999999986421 12232 3355566666665443 3345689999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHh
Q 000789 1190 IARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1190 iARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1266 (1283)
|||||+.+|+||||||||++||+++...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998764 7899999999999974 99999999999999999999876
Q ss_pred c
Q 000789 1267 I 1267 (1283)
Q Consensus 1267 ~ 1267 (1283)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 3
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=382.71 Aligned_cols=226 Identities=30% Similarity=0.433 Sum_probs=191.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CcceEEECCccCCCCChHH
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-----DSGHVLLDNIELPKFKLSW 1113 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~~~~~ 1113 (1283)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999974 3599999999999999999999999999999999999974 6999999999998888888
Q ss_pred HhcceEEEccCCCCC-hhhHHHHHhcCCC-CC--CC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1114 LRQQMGLVSQEPVLF-NETIRTNIAYGKQ-GG--AT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1114 lR~~i~~V~Qdp~Lf-~gTIreNl~~g~~-~~--~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
+|+.|+|+||+|.+| +.|++||+.++.. .. .+ ++++.++++..++.+.+.. .+++ ...+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~----~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLDA----PAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhcC----CcccCCHHHH
Confidence 899999999999755 6799999976421 01 11 2456677777776543321 2333 3457999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred HhccCchhHH
Q 000789 1265 MKITDGAYAS 1274 (1283)
Q Consensus 1265 l~~~~g~y~~ 1274 (1283)
.+.+...+.+
T Consensus 233 ~~~~~~~~~~ 242 (250)
T PRK14247 233 FTNPRHELTE 242 (250)
T ss_pred HcCCccHHHH
Confidence 8754444443
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=379.82 Aligned_cols=220 Identities=32% Similarity=0.528 Sum_probs=185.8
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC-----CceEEECCcccCCC--CHH
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD-----AGEVLIDGIDIKKL--QLK 447 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~~--~~~ 447 (1283)
|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999973 35899999999999999999999999999999999999998 99999999998753 345
Q ss_pred HHhcccEEEccCCCCCcccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCcc----ccccCCCCCCChHHHH
Q 000789 448 WIREKIGLVSQEPILFATSLRENIAYGKEN---ATDQEIRTAIELANAAKFIDKLPKGLD----TMAGEHGTQLSGGQKQ 520 (1283)
Q Consensus 448 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~lp~g~~----t~~~~~g~~LSgGqkq 520 (1283)
..++.++|+||++.+|+.|++||+.++... .+.++..+ .+.+.++.+ |++ ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDE-----IVEESLKKA--ALWDEVKDRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHc--CCCcchhhHhhCCcccCCHHHHH
Confidence 678899999999999999999999875321 11222111 122333333 443 4456677899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHh
Q 000789 521 RIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELI 599 (1283)
Q Consensus 521 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 599 (1283)
|++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998767899999999999865 9999999999999999999987
Q ss_pred cCCCC
Q 000789 600 KDPEG 604 (1283)
Q Consensus 600 ~~~~~ 604 (1283)
..+..
T Consensus 232 ~~~~~ 236 (247)
T TIGR00972 232 TNPKE 236 (247)
T ss_pred hCCCC
Confidence 65333
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=389.50 Aligned_cols=218 Identities=31% Similarity=0.507 Sum_probs=184.0
Q ss_pred EEEEEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCC----CChHH
Q 000789 1040 IELRCVSFKYPTRP--DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPK----FKLSW 1113 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~----~~~~~ 1113 (1283)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 88999999997421 1469999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEccCC--CCChhhHHHHHhcCCC-CCCCHHH----HHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHH
Q 000789 1114 LRQQMGLVSQEP--VLFNETIRTNIAYGKQ-GGATEEE----IIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQ 1186 (1283)
Q Consensus 1114 lR~~i~~V~Qdp--~Lf~gTIreNl~~g~~-~~~sd~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1186 (1283)
+|+.++||||+| .+|+.|++||+.++.. ...+.++ +.++++.+++.+.+ .......|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 888999999998 6888999999987621 1233333 44455555553111 23344689999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHH
Q 000789 1187 RIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDA 1263 (1283)
Q Consensus 1187 RlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~e 1263 (1283)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|||+|||+++.+.. ||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998753 7899999999999865 99999999999999999999
Q ss_pred HHhc
Q 000789 1264 LMKI 1267 (1283)
Q Consensus 1264 Ll~~ 1267 (1283)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8753
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=385.83 Aligned_cols=212 Identities=30% Similarity=0.567 Sum_probs=182.6
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...++++|
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999632 3599999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEccCC--CCCcccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000789 454 GLVSQEP--ILFATSLRENIAYGKEN--ATD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIA 525 (1283)
Q Consensus 454 ~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiA 525 (1283)
+||+|+| .++..|+.||+.++... .+. +++.++++..++ .........+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-----------~~~~~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM-----------WDFRDKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-----------HHHhcCChhhCCHHHHHHHHHH
Confidence 9999998 57888999999986321 222 223334444444 3334445568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhh-ccCEEEEEeCCEEeEecChhHH
Q 000789 526 RAILKNPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIR-NADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 526 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l 598 (1283)
|||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999999998853 789999999999985 4999999999999999998754
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=387.19 Aligned_cols=220 Identities=32% Similarity=0.568 Sum_probs=186.1
Q ss_pred EEEEEEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCC----CCHHH
Q 000789 375 IELRDVYFRYPARP--EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKK----LQLKW 448 (1283)
Q Consensus 375 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----~~~~~ 448 (1283)
|+++||+|+|++.. ..++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997422 1469999999999999999999999999999999999999999999999999863 34556
Q ss_pred HhcccEEEccCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 000789 449 IREKIGLVSQEP--ILFATSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLD-TMAGEHGTQLSGGQKQRIA 523 (1283)
Q Consensus 449 ~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqkqria 523 (1283)
.|++||||+|+| .+|+.||+|||.++... .+.++..+ .+++.++.+ |++ ......+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQ-----KAREMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 778999999998 68888999999987432 23333222 122344444 564 3346677899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhc
Q 000789 524 IARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600 (1283)
Q Consensus 524 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 600 (1283)
|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999998853 7899999999999865 99999999999999999999875
Q ss_pred C
Q 000789 601 D 601 (1283)
Q Consensus 601 ~ 601 (1283)
.
T Consensus 236 ~ 236 (290)
T PRK13634 236 D 236 (290)
T ss_pred C
Confidence 4
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=380.64 Aligned_cols=217 Identities=32% Similarity=0.471 Sum_probs=184.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
++++||+++|++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999741 35999999999999999999999999999999999999999999999999998888778889999
Q ss_pred EEccCCCCCh-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1120 LVSQEPVLFN-ETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qdp~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
|+||+|.+|. .|++||+.++.. ...+ ++++.++++..++.+ +......+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999885 699999976411 1112 223444444444331 012344456899999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998753 7899999999998765 999999999999999999999764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-42 Score=379.68 Aligned_cols=215 Identities=37% Similarity=0.574 Sum_probs=183.3
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999964 369999999999999999999999999999999999999999999999999876543 256899
Q ss_pred EEccCCCCCc-ccHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000789 455 LVSQEPILFA-TSLRENIAYGKENA------TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARA 527 (1283)
Q Consensus 455 ~v~Q~~~l~~-~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARa 527 (1283)
||+|++.+|. .|++||+.++.... ...+.. ..+.+.++.+ |++........+||||||||++||||
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~a 150 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARA 150 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 9999999886 59999999864211 111111 1223445555 56655666778999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 528 ILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 528 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|+.+|++|||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 151 LAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999999999998753 6899999999998765 999999999999999999998764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=375.21 Aligned_cols=217 Identities=26% Similarity=0.420 Sum_probs=179.2
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHH-hcce
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWL-RQQM 1118 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~i 1118 (1283)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999974 359999999999999999999999999999999999999999999999999988776554 6789
Q ss_pred EEEccCCCCChh-hHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccC
Q 000789 1119 GLVSQEPVLFNE-TIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKN 1197 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~g-TIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~ 1197 (1283)
+|+||++.+|.. |++||+.++.. .....+..+.+ .++++.++ +++........+||||||||++||||++++
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~ 150 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAY-ARRRAKRKARL-----ERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSR 150 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhh-hcCchhHHHHH-----HHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcC
Confidence 999999999876 99999987522 11111111111 11122211 122233344568999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHh
Q 000789 1198 PKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1198 p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1266 (1283)
|++|||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 151 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 151 PKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999999999999999999999999875 47899999999998866 99999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=382.64 Aligned_cols=219 Identities=31% Similarity=0.525 Sum_probs=185.4
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEECCcccCC--CCH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD-----PDAGEVLIDGIDIKK--LQL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 446 (1283)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5899999999963 359999999999999999999999999999999999975 689999999999864 345
Q ss_pred HHHhcccEEEccCCCCCcccHHHHHhcCCCC--C-C----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 000789 447 KWIREKIGLVSQEPILFATSLRENIAYGKEN--A-T----DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 519 (1283)
..+|++++|++|++.+|+.|++||+.++... . . .+++.++++..++.+++ .+..+..+.+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHH
Confidence 5678899999999999989999999875311 1 1 12333444444333222 2345667789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767899999999999865 999999999999999999998
Q ss_pred hcCC
Q 000789 599 IKDP 602 (1283)
Q Consensus 599 ~~~~ 602 (1283)
...+
T Consensus 236 ~~~~ 239 (253)
T PRK14242 236 FTRP 239 (253)
T ss_pred HcCC
Confidence 7653
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=377.59 Aligned_cols=211 Identities=29% Similarity=0.448 Sum_probs=178.5
Q ss_pred cEEEEEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHH---H
Q 000789 1039 AIELRCVSFKYPTRP-DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW---L 1114 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---l 1114 (1283)
-|+++||+++|+.+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997431 146999999999999999999999999999999999999999999999999998887643 3
Q ss_pred h-cceEEEccCCCCChh-hHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHH
Q 000789 1115 R-QQMGLVSQEPVLFNE-TIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQR 1187 (1283)
Q Consensus 1115 R-~~i~~V~Qdp~Lf~g-TIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1187 (1283)
| +.++|+||++.+|.. |++||+.++.. ...+ ++++.++++..++.++ ......+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 3 679999999998865 99999976311 1122 2345555555555433 333446899999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhhcCEEEEEeCCEEEEecC
Q 000789 1188 IAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGS 1260 (1283)
Q Consensus 1188 laiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt 1260 (1283)
++||||++.+|+||||||||++||+++...+.+.|+++. +++|+|+|||+++.+..+|++++|++|+|++.|.
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 4789999999999999999999999999998775
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=372.29 Aligned_cols=204 Identities=25% Similarity=0.458 Sum_probs=178.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++||+|+|++ .++++|+||+|++| ++||+||||||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999974 35999999999999 99999999999999999999999999999999999998776 67899999
Q ss_pred EEccCCCCChh-hHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1120 LVSQEPVLFNE-TIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qdp~Lf~g-TIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
|+||+|.+|.. |++||+.+... ...+ ++++.++++..++.++.+ +.+ .+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-------KKI----GSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-------Cch----hhCCHHHHHHHHHHHH
Confidence 99999999875 99999975310 1112 345667777777765533 222 4799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEec
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1259 (1283)
++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999998777999999999999865 9999999999999875
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=389.23 Aligned_cols=217 Identities=24% Similarity=0.444 Sum_probs=183.0
Q ss_pred EEEEEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCC---------
Q 000789 1040 IELRCVSFKYPTRP--DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPK--------- 1108 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~--------- 1108 (1283)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 89999999997432 1359999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CChHHHhcceEEEccCC--CCChhhHHHHHhcCCC-CCCCHH----HHHHHHHHhChH-HHHHhC
Q 000789 1109 ---------------FKLSWLRQQMGLVSQEP--VLFNETIRTNIAYGKQ-GGATEE----EIIAATEASNAH-NFISAL 1165 (1283)
Q Consensus 1109 ---------------~~~~~lR~~i~~V~Qdp--~Lf~gTIreNl~~g~~-~~~sd~----ei~~al~~a~l~-~~I~~l 1165 (1283)
.+...+|++|+||||+| .+|..|++|||.++.. ...+.+ ++.++++.+++. ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---- 158 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY---- 158 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 13456889999999986 6888999999987632 123333 345555555553 23
Q ss_pred CCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-
Q 000789 1166 PHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN- 1243 (1283)
Q Consensus 1166 p~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~- 1243 (1283)
......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+..
T Consensus 159 -------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 159 -------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 234456899999999999999999999999999999999999999999998875 47899999999998754
Q ss_pred cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1244 ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1244 ~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
||||++|++|++++.|+++++.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998764
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=391.16 Aligned_cols=229 Identities=30% Similarity=0.464 Sum_probs=192.0
Q ss_pred cEEEEEEEEECCCCC----------CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCC
Q 000789 374 EIELRDVYFRYPARP----------EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKK 443 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~----------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~ 443 (1283)
-|+++|++++|+.+. ..++++||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999988
Q ss_pred CCHHH---HhcccEEEccCC--CCCc-ccHHHHHhcCC----CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCC
Q 000789 444 LQLKW---IREKIGLVSQEP--ILFA-TSLRENIAYGK----ENATDQEIRTAIELANAAKFIDKLPKGLD-TMAGEHGT 512 (1283)
Q Consensus 444 ~~~~~---~r~~i~~v~Q~~--~l~~-~ti~~ni~~~~----~~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~ 512 (1283)
++... +|++|+||+|+| .+++ .||.|||.++. +..+.++..+.+ .+.++.+ |++ ......+.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~-----~~~l~~v--gl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRV-----KAMMLKV--GLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHc--CCChHHhcCCcc
Confidence 87543 577899999998 4774 69999997642 123333332222 2344444 552 34567778
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEE
Q 000789 513 QLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKI 589 (1283)
Q Consensus 513 ~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i 589 (1283)
+||||||||++|||||+.+|++||+||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998864 6899999999999976 999999999999
Q ss_pred eEecChhHHhcCCCChhHHH
Q 000789 590 VEKGTHDELIKDPEGPYTQL 609 (1283)
Q Consensus 590 ~~~g~~~~l~~~~~~~~~~~ 609 (1283)
++.|++++++.++...|.+.
T Consensus 241 ve~g~~~~i~~~~~~py~~~ 260 (331)
T PRK15079 241 VELGTYDEVYHNPLHPYTKA 260 (331)
T ss_pred EEEcCHHHHHcCCCCHHHHH
Confidence 99999999998766677663
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=380.90 Aligned_cols=219 Identities=30% Similarity=0.472 Sum_probs=185.7
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCC---------
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK--------- 1110 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~--------- 1110 (1283)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999974 35999999999999999999999999999999999999999999999999987553
Q ss_pred ----hHHHhcceEEEccCCCCCh-hhHHHHHhcCCC--CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCC
Q 000789 1111 ----LSWLRQQMGLVSQEPVLFN-ETIRTNIAYGKQ--GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQ 1179 (1283)
Q Consensus 1111 ----~~~lR~~i~~V~Qdp~Lf~-gTIreNl~~g~~--~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~ 1179 (1283)
...+|+.++||+|++.+|. .|++||+.++.. .... ++++.++++..++.+++. .....
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-----------HMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-----------cChhh
Confidence 2467889999999998884 799999986411 1112 234555666666555443 33458
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEE
Q 000789 1180 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIA 1256 (1283)
Q Consensus 1180 LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Iv 1256 (1283)
||||||||++||||++++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 7899999999999865 9999999999999
Q ss_pred EecChHHHHhccCchh
Q 000789 1257 EQGSHDALMKITDGAY 1272 (1283)
Q Consensus 1257 e~Gt~~eLl~~~~g~y 1272 (1283)
+.|+++++.+.+...|
T Consensus 227 ~~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 227 EQGKPDEIFRQPKEER 242 (252)
T ss_pred EeCCHHHHhcCCCcHH
Confidence 9999999986544333
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=385.32 Aligned_cols=215 Identities=29% Similarity=0.491 Sum_probs=188.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
++++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 35999999999999999999999999999999999999999999999999998777778899999
Q ss_pred EEccCC--CCChhhHHHHHhcCCC-CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHH
Q 000789 1120 LVSQEP--VLFNETIRTNIAYGKQ-GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192 (1283)
Q Consensus 1120 ~V~Qdp--~Lf~gTIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiAR 1192 (1283)
||||+| .+|+.|++||+.++.. ...+. +.+.++++..++.++..+.| ..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 4788999999986421 12232 34667777777766654443 489999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHh-hcCEEEEEeCCEEEEecChHHHHhc
Q 000789 1193 AVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIK-NADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1193 All~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999998753 789999999999985 5999999999999999999999763
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=374.03 Aligned_cols=210 Identities=24% Similarity=0.407 Sum_probs=180.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999974 3599999999999999999999999999999999999999999999999988653 356788999
Q ss_pred EEccCCCCCh-hhHHHHHhcCCC-CCC----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1120 LVSQEPVLFN-ETIRTNIAYGKQ-GGA----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qdp~Lf~-gTIreNl~~g~~-~~~----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
|+||++.+|. .|++||+.++.. ... .++++.++++..++.++....| .+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999998886 499999975311 112 2345667777777766543332 4799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999998753 6899999999999876 999999999999999998875
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=399.39 Aligned_cols=218 Identities=29% Similarity=0.476 Sum_probs=187.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 4899999999974 359999999999999999999999999999999999999999999999999987654 35789
Q ss_pred EEEccCCCCCh-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHH
Q 000789 1119 GLVSQEPVLFN-ETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiAR 1192 (1283)
+||||++.+|. .|++||+.++.. ...+ ++++.++++..++.++..+.| .+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999987521 1122 234666777777665544433 479999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhccC
Q 000789 1193 AVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITD 1269 (1283)
Q Consensus 1193 All~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~~ 1269 (1283)
||+++|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~ 226 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998753 7899999999998865 99999999999999999999987655
Q ss_pred chh
Q 000789 1270 GAY 1272 (1283)
Q Consensus 1270 g~y 1272 (1283)
..|
T Consensus 227 ~~~ 229 (369)
T PRK11000 227 NRF 229 (369)
T ss_pred cHH
Confidence 444
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=384.39 Aligned_cols=217 Identities=29% Similarity=0.528 Sum_probs=187.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++|++++|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 34699999999999999999999999999999999999999999999999999887777889999
Q ss_pred EEEccCC--CCChhhHHHHHhcCCC-CCCCHH----HHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHH
Q 000789 1119 GLVSQEP--VLFNETIRTNIAYGKQ-GGATEE----EIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIA 1191 (1283)
Q Consensus 1119 ~~V~Qdp--~Lf~gTIreNl~~g~~-~~~sd~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiA 1191 (1283)
+||||+| .++..|++||+.++.. ...+.+ .+.++++..++.++..+. ..+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 4567899999986421 112333 245566666666554443 358999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhc
Q 000789 1192 RAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1192 RAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 4899999999999888999999999999999999988764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=373.48 Aligned_cols=208 Identities=24% Similarity=0.476 Sum_probs=177.3
Q ss_pred EEEEEEEEECCCCCC-cccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1040 IELRCVSFKYPTRPD-VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~-~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
|+++||+++|++... .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999975311 169999999999999999999999999999999999999999999999999875 346778999
Q ss_pred EEEccCCCCChh-hHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHH
Q 000789 1119 GLVSQEPVLFNE-TIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~g-TIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiAR 1192 (1283)
+|+||+|.+|.. |++||+.+... ...+ ++++.++++..++.+... ....+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999975311 1122 234556666666654433 344589999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEec
Q 000789 1193 AVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259 (1283)
Q Consensus 1193 All~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1259 (1283)
|++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999875 47899999999998876 9999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=381.19 Aligned_cols=224 Identities=31% Similarity=0.542 Sum_probs=188.5
Q ss_pred cccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEECCcccCC--C
Q 000789 372 EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD-----PDAGEVLIDGIDIKK--L 444 (1283)
Q Consensus 372 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~ 444 (1283)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 456999999999963 369999999999999999999999999999999999986 589999999999853 3
Q ss_pred CHHHHhcccEEEccCCCCCcccHHHHHhcCCC---CCCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 000789 445 QLKWIREKIGLVSQEPILFATSLRENIAYGKE---NATDQ----EIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGG 517 (1283)
Q Consensus 445 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~---~~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 517 (1283)
+...+|++|+|++|++.+|+.|++||+.++.. ..+.+ ++.++++..++.+ ++.+..++...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN-------EVKDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCh-------hhHHHHhcCCCCCCHH
Confidence 45677889999999999999999999987632 12222 2333343333221 1234566778899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChh
Q 000789 518 QKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHD 596 (1283)
Q Consensus 518 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~ 596 (1283)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999999865 9999999999999999999
Q ss_pred HHhcCCCCh
Q 000789 597 ELIKDPEGP 605 (1283)
Q Consensus 597 ~l~~~~~~~ 605 (1283)
++...+...
T Consensus 241 ~~~~~~~~~ 249 (260)
T PRK10744 241 TIFTKPAKK 249 (260)
T ss_pred HHHhCCCcH
Confidence 987653333
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=386.93 Aligned_cols=220 Identities=28% Similarity=0.491 Sum_probs=184.9
Q ss_pred EEEEEEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCC---------
Q 000789 375 IELRDVYFRYPARP--EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKK--------- 443 (1283)
Q Consensus 375 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~--------- 443 (1283)
|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 1359999999999999999999999999999999999999999999999877632
Q ss_pred ---------------CCHHHHhcccEEEccCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc
Q 000789 444 ---------------LQLKWIREKIGLVSQEP--ILFATSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLD 504 (1283)
Q Consensus 444 ---------------~~~~~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~ 504 (1283)
.+...+++.||||+|+| .+|..||+|||.|+... .+.++..+. +.+.++.+ |++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~ 155 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELV--GLD 155 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCC
Confidence 13456788999999986 67888999999987432 233333221 22344444 664
Q ss_pred -ccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEE
Q 000789 505 -TMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIR-NADLI 581 (1283)
Q Consensus 505 -t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i 581 (1283)
........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence 45677788999999999999999999999999999999999999999999999875 4789999999999875 49999
Q ss_pred EEEeCCEEeEecChhHHhcC
Q 000789 582 AVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 582 ~vl~~G~i~~~g~~~~l~~~ 601 (1283)
++|++|+|++.|+++++..+
T Consensus 236 ~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 236 IFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 99999999999999998764
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=367.41 Aligned_cols=200 Identities=37% Similarity=0.563 Sum_probs=182.0
Q ss_pred EEEEEEEEECCCCCC--cccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcc
Q 000789 1040 IELRCVSFKYPTRPD--VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQ 1117 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~--~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1117 (1283)
|+++||+++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999975311 3699999999999999999999999999999999999999999999999 6
Q ss_pred eEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccC
Q 000789 1118 MGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKN 1197 (1283)
Q Consensus 1118 i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~ 1197 (1283)
|+|+||+|.+|++|++||+.++. ..++++..++++.+++.+++..+|.|+++.+.+.+.+||||||||++||||++.+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~ 145 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD 145 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC--CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998862 3456678888999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHH-HHHHHc-CCceEEEEecCchHHhhcCEEEEEeCCE
Q 000789 1198 PKILLLDEATSALDAESERVVQD-ALERVM-VNRTTVVVAHRLTTIKNADIIAVVKNGV 1254 (1283)
Q Consensus 1198 p~ILiLDEaTSaLD~~te~~I~~-~L~~~~-~~~TvI~IaHrl~ti~~~D~I~vl~~G~ 1254 (1283)
|+++||||||++||+++.+.+.+ .+++.. +++|+|++||+++.+..||++++|++|+
T Consensus 146 p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999999999999999888877 456553 4689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=365.29 Aligned_cols=226 Identities=38% Similarity=0.617 Sum_probs=195.6
Q ss_pred cEEEEEEEEECCCCCC---------------------CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 000789 374 EIELRDVYFRYPARPE---------------------VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~---------------------~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 432 (1283)
.|+++||++-|+.++. .--++|+||+|+.||+..|.|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 5889999988864311 1247899999999999999999999999999999999999999
Q ss_pred eEEECCcccCCCCHHHHh----cccEEEccCCCCCcc-cHHHHHhcCCCC--CC----HHHHHHHHHHhcHHHHHHhCCC
Q 000789 433 EVLIDGIDIKKLQLKWIR----EKIGLVSQEPILFAT-SLRENIAYGKEN--AT----DQEIRTAIELANAAKFIDKLPK 501 (1283)
Q Consensus 433 ~i~~~g~~~~~~~~~~~r----~~i~~v~Q~~~l~~~-ti~~ni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~lp~ 501 (1283)
+|++||.|+..++.+.|| +++++|||+..||+- ||.||..||.+- .. .+...++++.+++++|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999987764 589999999999975 999999999752 12 234556666777766666655
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhh-hcc
Q 000789 502 GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTI-RNA 578 (1283)
Q Consensus 502 g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~-~~~ 578 (1283)
.+||||+||||.|||||..||+||++|||+|||||--+..+|+.|.++.+ +||+|+|||++++. +-.
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 59999999999999999999999999999999999999999999988754 58999999999986 459
Q ss_pred CEEEEEeCCEEeEecChhHHhcCCCChhHHHH
Q 000789 579 DLIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610 (1283)
Q Consensus 579 d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 610 (1283)
|||..|++|+|++.|||+|++.+|...|-.-+
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~F 264 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRDF 264 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHHHH
Confidence 99999999999999999999998877776544
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=377.09 Aligned_cols=217 Identities=26% Similarity=0.492 Sum_probs=182.5
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+.. .++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEE
Confidence 789999999973 3599999999999999999999999999999999999999999999999999876654 346899
Q ss_pred EEccCCCC-ChhhHHHHHhcCCC-CCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccC
Q 000789 1120 LVSQEPVL-FNETIRTNIAYGKQ-GGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKN 1197 (1283)
Q Consensus 1120 ~V~Qdp~L-f~gTIreNl~~g~~-~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~ 1197 (1283)
|+||++.+ +..|++||+.++.. ...+.++..+ .+.++++.+ |++........+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999987 57899999976421 1222222111 122333333 444445555668999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhc
Q 000789 1198 PKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1198 p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999875 37899999999999988999999999999999999999864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=374.91 Aligned_cols=217 Identities=29% Similarity=0.479 Sum_probs=182.0
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHH-hccc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWI-REKI 453 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 453 (1283)
|+++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999963 369999999999999999999999999999999999999999999999999987776544 6789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000789 454 GLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNP 532 (1283)
Q Consensus 454 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~ 532 (1283)
+|++|++.+|+. |++||+.++.......+..+ .+.+.++.++ +++......+.+||||||||++|||||+.+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKA-----RLERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHH-----HHHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 99999998643221111111 1122233331 2344456677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhc
Q 000789 533 KILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600 (1283)
Q Consensus 533 ~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 600 (1283)
++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999875 46899999999999866 99999999999999999888753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=381.97 Aligned_cols=224 Identities=29% Similarity=0.461 Sum_probs=188.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC--C---CcceEEECCccCCC--CCh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD--P---DSGHVLLDNIELPK--FKL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--~---~~G~I~idG~di~~--~~~ 1111 (1283)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999974 359999999999999999999999999999999999997 3 58999999999864 345
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC-CC-CCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GG-ATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~-~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
..+|+.++|+||++.+|..|++||+.++.. .. .++ +++.++++..++.+++. ......+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 677899999999999999999999986521 11 122 23445566666544332 223445568999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
||++||||++++|+||||||||++||+++...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778899999999999865 999999999999999999999
Q ss_pred HhccCchh
Q 000789 1265 MKITDGAY 1272 (1283)
Q Consensus 1265 l~~~~g~y 1272 (1283)
..++...|
T Consensus 242 ~~~~~~~~ 249 (259)
T PRK14274 242 FSNPDDQR 249 (259)
T ss_pred hhCCCCHH
Confidence 86544443
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=378.30 Aligned_cols=218 Identities=35% Similarity=0.572 Sum_probs=187.1
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
++++||+++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999741 35999999999999999999999999999999999999999999999999998877777788999
Q ss_pred EEccCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccc--cccCCCCCCChHHHHHHHHHHHHh
Q 000789 455 LVSQEPILFA-TSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDT--MAGEHGTQLSGGQKQRIAIARAIL 529 (1283)
Q Consensus 455 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t--~~~~~g~~LSgGqkqriaiARal~ 529 (1283)
|++|++.+|. .|++||+.++... .+.++. ...+.+.++.+ |++. ...+.+.+||||||||++|||||+
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999986 5999999875321 111111 12234555555 6654 567778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 530 KNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 530 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999998753 7899999999998765 999999999999999999988754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=379.13 Aligned_cols=221 Identities=37% Similarity=0.549 Sum_probs=184.3
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCC---HHHHhc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ---LKWIRE 451 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~r~ 451 (1283)
++++||+++|+++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4789999999641 46999999999999999999999999999999999999999999999999998776 456788
Q ss_pred ccEEEccCCCCCc-ccHHHHHhcCCCCCC--HHHH---HHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000789 452 KIGLVSQEPILFA-TSLRENIAYGKENAT--DQEI---RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIA 525 (1283)
Q Consensus 452 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~--~~~~---~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiA 525 (1283)
.++|++|++.+|. .|++||+.++..... ...+ ........+.+.++.+ |++......+.+||||||||++||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHH
Confidence 9999999998887 599999987542110 0000 0000111223445555 666666778889999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHh
Q 000789 526 RAILKNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELI 599 (1283)
Q Consensus 526 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 599 (1283)
|||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999999875 37899999999999984 9999999999999999988863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=383.31 Aligned_cols=225 Identities=29% Similarity=0.442 Sum_probs=187.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChH---HHh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLS---WLR 1115 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR 1115 (1283)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4999999999963 3599999999999999999999999999999999999999999999999998776543 457
Q ss_pred cceEEEccCCCCChh-hHHHHHhcCCC--CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHH
Q 000789 1116 QQMGLVSQEPVLFNE-TIRTNIAYGKQ--GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRI 1188 (1283)
Q Consensus 1116 ~~i~~V~Qdp~Lf~g-TIreNl~~g~~--~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1188 (1283)
++++|+||++.+|.. |++||+.++.. ...+. +.+.++++..++.+.. .....+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA-----------KLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHH
Confidence 889999999999975 99999975311 11222 2344455555554332 223358999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHH
Q 000789 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1189 aiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
+|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 6899999999999876 9999999999999999999998
Q ss_pred hccCchhHHHHH
Q 000789 1266 KITDGAYASLVA 1277 (1283)
Q Consensus 1266 ~~~~g~y~~L~~ 1277 (1283)
+.+...+..++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 754344455543
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=381.92 Aligned_cols=224 Identities=30% Similarity=0.450 Sum_probs=188.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CcceEEECCccCCCC--Ch
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-----DSGHVLLDNIELPKF--KL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~--~~ 1111 (1283)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999973 3599999999999999999999999999999999999985 799999999998653 24
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC-CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQ 1186 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1186 (1283)
..+|+.++|+||++.+|..|++||+.++.. ...+. +++.++++.+++.+.+. .........|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHHH
Confidence 567889999999999999999999986421 12232 23556666666543221 1223345689999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHH
Q 000789 1187 RIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1187 RlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
|++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999866 9999999999999999999998
Q ss_pred hccCchh
Q 000789 1266 KITDGAY 1272 (1283)
Q Consensus 1266 ~~~~g~y 1272 (1283)
+.+...|
T Consensus 242 ~~~~~~~ 248 (258)
T PRK14268 242 HNPREKS 248 (258)
T ss_pred cCCCCHH
Confidence 6544433
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=382.15 Aligned_cols=223 Identities=29% Similarity=0.482 Sum_probs=188.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCcceEEECCccCCCCC--hH
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLDNIELPKFK--LS 1112 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~~~--~~ 1112 (1283)
-+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|++. |++|+|.++|.++.+.+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999963 369999999999999999999999999999999999986 47999999999986543 34
Q ss_pred HHhcceEEEccCCCCChhhHHHHHhcCCC-CCC------CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1113 WLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA------TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1113 ~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~------sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
.+|+.++||||++.+|.+|++||+.++.. .+. .++++.++++..++.+.+. +.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 57889999999999999999999986411 111 1234566677766654321 233445668999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
||++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999875 999999999999999999999
Q ss_pred HhccCchh
Q 000789 1265 MKITDGAY 1272 (1283)
Q Consensus 1265 l~~~~g~y 1272 (1283)
.+.+...|
T Consensus 236 ~~~~~~~~ 243 (251)
T PRK14244 236 FKNPQSSK 243 (251)
T ss_pred hcCCCChH
Confidence 87655544
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=389.85 Aligned_cols=227 Identities=27% Similarity=0.418 Sum_probs=188.9
Q ss_pred cEEEEEEEEECCCCC-------CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCCh
Q 000789 1039 AIELRCVSFKYPTRP-------DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~-------~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~ 1111 (1283)
-|+++|++++|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+.+.+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997421 2469999999999999999999999999999999999999999999999999988764
Q ss_pred ---HHHhcceEEEccCCC--CCh-hhHHHHHhcCC--CCCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCC
Q 000789 1112 ---SWLRQQMGLVSQEPV--LFN-ETIRTNIAYGK--QGGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQ 1179 (1283)
Q Consensus 1112 ---~~lR~~i~~V~Qdp~--Lf~-gTIreNl~~g~--~~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~ 1179 (1283)
..+|++|+||||+|. |+. .|+.+|+.... ....+ .+++.++++.+++.+ ..++. ....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~----~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDR----YPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcC----CCcc
Confidence 356789999999993 554 58988885310 01122 234566677776642 12233 2357
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEE
Q 000789 1180 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIA 1256 (1283)
Q Consensus 1180 LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Iv 1256 (1283)
||||||||++|||||+.+|++||+||||++||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 7899999999999975 9999999999999
Q ss_pred EecChHHHHhccCchhHHH
Q 000789 1257 EQGSHDALMKITDGAYASL 1275 (1283)
Q Consensus 1257 e~Gt~~eLl~~~~g~y~~L 1275 (1283)
|.|+++++++.+...|.+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EECCHHHHhcCCCCHHHHH
Confidence 9999999998656666653
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=385.39 Aligned_cols=218 Identities=26% Similarity=0.473 Sum_probs=189.9
Q ss_pred cEEEEEEEEECCCCC---CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCC-hHHH
Q 000789 1039 AIELRCVSFKYPTRP---DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK-LSWL 1114 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~---~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~-~~~l 1114 (1283)
-|+++||+++|++.. ..++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999987654 3567
Q ss_pred hcceEEEccCC--CCChhhHHHHHhcCCCC-CCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHH
Q 000789 1115 RQQMGLVSQEP--VLFNETIRTNIAYGKQG-GAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQR 1187 (1283)
Q Consensus 1115 R~~i~~V~Qdp--~Lf~gTIreNl~~g~~~-~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1187 (1283)
|++++||||+| .+|..|+.+|+.++... ..+ ++++.++++.+++.++..+.| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 89999999998 47777999999875211 122 345677788888877765544 4899999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHH
Q 000789 1188 IAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1188 laiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
++|||||+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999875 378999999999999889999999999999999999997
Q ss_pred hc
Q 000789 1266 KI 1267 (1283)
Q Consensus 1266 ~~ 1267 (1283)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=374.83 Aligned_cols=203 Identities=30% Similarity=0.527 Sum_probs=171.4
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHH---HHhc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLK---WIRE 451 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r~ 451 (1283)
|+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999642 23599999999999999999999999999999999999999999999999998766543 3678
Q ss_pred ccEEEccCCCCCc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000789 452 KIGLVSQEPILFA-TSLRENIAYGKEN--AT----DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAI 524 (1283)
Q Consensus 452 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriai 524 (1283)
+++|++|++.+|. .|++||+.++... .. ++++.++++.. |++........+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKV-----------GLEGKAHALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CChhhhhCChhhCCHHHHHHHHH
Confidence 9999999999887 4999999875211 11 12233334333 44444455567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEE
Q 000789 525 ARAILKNPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGKI 589 (1283)
Q Consensus 525 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i 589 (1283)
||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999998754 6899999999999875 999999999975
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=398.16 Aligned_cols=214 Identities=27% Similarity=0.495 Sum_probs=187.5
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999998888889999
Q ss_pred EEEccCCCC-CcccHHHHHhcCCCCC-------C---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000789 454 GLVSQEPIL-FATSLRENIAYGKENA-------T---DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRI 522 (1283)
Q Consensus 454 ~~v~Q~~~l-~~~ti~~ni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri 522 (1283)
|||+|++.+ |+.|++||+.++.... + .+.+.++++.. |+.........+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~v-----------gl~~~~~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERT-----------GVAQFADRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHH
Confidence 999999987 5679999999875211 1 12334444444 444444555679999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhc
Q 000789 523 AIARAILKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600 (1283)
Q Consensus 523 aiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 600 (1283)
+|||||+++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999986 47899999999999965 99999999999999999999986
Q ss_pred C
Q 000789 601 D 601 (1283)
Q Consensus 601 ~ 601 (1283)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=383.09 Aligned_cols=214 Identities=30% Similarity=0.468 Sum_probs=188.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5999999999974 3699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCCCCCh-hhHHHHHhcCCCC---------CCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHH
Q 000789 1119 GLVSQEPVLFN-ETIRTNIAYGKQG---------GATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRI 1188 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~-gTIreNl~~g~~~---------~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1188 (1283)
+|+||++.++. .|++||+.++... ...++++.++++.+++.+++...| .+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHH
Confidence 99999987665 5999999865210 112345777888888766544433 37999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHH
Q 000789 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1189 aiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
+||||++.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999998753 7899999999999865 9999999999999999999987
Q ss_pred h
Q 000789 1266 K 1266 (1283)
Q Consensus 1266 ~ 1266 (1283)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 5
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=383.09 Aligned_cols=220 Identities=26% Similarity=0.447 Sum_probs=186.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCcceEEECCccCCC--CCh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLDNIELPK--FKL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~~ 1111 (1283)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999974 359999999999999999999999999999999999865 789999999999864 344
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC--CCC----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ--GGA----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~~~----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
..+|++++|+||++.+|++|++||+.++.. ... .++.+.++++..++.+.+. ........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 567889999999999999999999986411 111 1234555666665532221 223345568999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767899999999998865 999999999999999999999
Q ss_pred Hhcc
Q 000789 1265 MKIT 1268 (1283)
Q Consensus 1265 l~~~ 1268 (1283)
...+
T Consensus 251 ~~~~ 254 (268)
T PRK14248 251 FTSP 254 (268)
T ss_pred HhCC
Confidence 8653
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=376.82 Aligned_cols=220 Identities=37% Similarity=0.572 Sum_probs=185.9
Q ss_pred EEEEEEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHH---HHh
Q 000789 375 IELRDVYFRYPARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLK---WIR 450 (1283)
Q Consensus 375 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r 450 (1283)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997421 12699999999999999999999999999999999999999999999999998776543 347
Q ss_pred cccEEEccCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000789 451 EKIGLVSQEPILFA-TSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARA 527 (1283)
Q Consensus 451 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARa 527 (1283)
+.++|++|++.+|. .|++||+.++... ....+. ...+++.++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI-----EERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 78999999999997 5999999875321 111111 11233455555 66666666778999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 528 ILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 528 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999998753 6899999999999875 999999999999999999888653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=378.91 Aligned_cols=225 Identities=32% Similarity=0.494 Sum_probs=189.7
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CcceEEECCccCCC--CC
Q 000789 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-----DSGHVLLDNIELPK--FK 1110 (1283)
Q Consensus 1038 g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~~ 1110 (1283)
|.|+++||+++|++ .++++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999974 3599999999999999999999999999999999999863 69999999999864 35
Q ss_pred hHHHhcceEEEccCCCCChhhHHHHHhcCCC-CCC-----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhH
Q 000789 1111 LSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA-----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQ 1184 (1283)
Q Consensus 1111 ~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~-----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1184 (1283)
...+|+.++||||++.+|+.|++||+.++.. ... .++++.++++.+++.+.+. ........+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 5678899999999999999999999986521 111 1344556666666543332 22334556899999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHH
Q 000789 1185 KQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDA 1263 (1283)
Q Consensus 1185 rQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~e 1263 (1283)
|||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778899999999998866 99999999999999999999
Q ss_pred HHhccCchh
Q 000789 1264 LMKITDGAY 1272 (1283)
Q Consensus 1264 Ll~~~~g~y 1272 (1283)
+...+...+
T Consensus 232 ~~~~~~~~~ 240 (250)
T PRK14240 232 LFTNPKDKR 240 (250)
T ss_pred HHhCCCChH
Confidence 986544433
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=383.23 Aligned_cols=217 Identities=31% Similarity=0.527 Sum_probs=190.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCc---ceEEECCccCCCCChHHHh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS---GHVLLDNIELPKFKLSWLR 1115 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~---G~I~idG~di~~~~~~~lR 1115 (1283)
.|+++|++|+|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.+||.++...+...+|
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 59999999999743 2359999999999999999999999999999999999999987 8999999999877777888
Q ss_pred cceEEEccCC--CCChhhHHHHHhcCCC-CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHH
Q 000789 1116 QQMGLVSQEP--VLFNETIRTNIAYGKQ-GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRI 1188 (1283)
Q Consensus 1116 ~~i~~V~Qdp--~Lf~gTIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1188 (1283)
++++||||+| .+++.|++|||.++.. ...+. +++.++++.+++.++....| .+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999998 4678899999987521 12333 34667777777776655444 48999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHh
Q 000789 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1189 aiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~ 1266 (1283)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999998753 789999999999998899999999999999999998875
Q ss_pred c
Q 000789 1267 I 1267 (1283)
Q Consensus 1267 ~ 1267 (1283)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=396.57 Aligned_cols=206 Identities=34% Similarity=0.560 Sum_probs=178.6
Q ss_pred ccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHH----hcceEEEccCCCCCh-h
Q 000789 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWL----RQQMGLVSQEPVLFN-E 1130 (1283)
Q Consensus 1056 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l----R~~i~~V~Qdp~Lf~-g 1130 (1283)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+...+ |++++||||++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999988876554 468999999999986 5
Q ss_pred hHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000789 1131 TIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDE 1205 (1283)
Q Consensus 1131 TIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDE 1205 (1283)
|++||+.++.. ...+ ++++.++++.+++.++..+.| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999987521 1122 345667777777766655544 4899999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhccCchh
Q 000789 1206 ATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITDGAY 1272 (1283)
Q Consensus 1206 aTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y 1272 (1283)
|||+||+.+.+.+++.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++..+...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999999874 37899999999998865 99999999999999999999987654444
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=381.63 Aligned_cols=222 Identities=32% Similarity=0.509 Sum_probs=188.8
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCcceEEECCccCCC--CC
Q 000789 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLDNIELPK--FK 1110 (1283)
Q Consensus 1038 g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~ 1110 (1283)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999974 359999999999999999999999999999999999987 689999999999863 45
Q ss_pred hHHHhcceEEEccCCCCChhhHHHHHhcCCC-CCC---CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHH
Q 000789 1111 LSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA---TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQ 1186 (1283)
Q Consensus 1111 ~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~---sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1186 (1283)
...+|+.++||||++.+|..|++||+.++.. ... .++++.++++.+++.+.+ +........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 6778899999999999998999999987521 111 134456667666654322 22334455689999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeC-----------CE
Q 000789 1187 RIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKN-----------GV 1254 (1283)
Q Consensus 1187 RlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~-----------G~ 1254 (1283)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999998777899999999998865 999999996 67
Q ss_pred EEEecChHHHHhccC
Q 000789 1255 IAEQGSHDALMKITD 1269 (1283)
Q Consensus 1255 Ive~Gt~~eLl~~~~ 1269 (1283)
++|.|++++++..+.
T Consensus 242 ~~~~~~~~~~~~~~~ 256 (269)
T PRK14259 242 LVEFNETKKIFNSPK 256 (269)
T ss_pred EEEeCCHHHHHhCcC
Confidence 999999999986533
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=369.85 Aligned_cols=204 Identities=25% Similarity=0.417 Sum_probs=179.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+. ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 3699999999999999999999999999999999999999999999999988764 56788999
Q ss_pred EEccCCCCC-hhhHHHHHhcCCC-CCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccC
Q 000789 1120 LVSQEPVLF-NETIRTNIAYGKQ-GGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKN 1197 (1283)
Q Consensus 1120 ~V~Qdp~Lf-~gTIreNl~~g~~-~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~ 1197 (1283)
||||++.+| +.|++||+.++.. ...+++++.++++..++.+...+. ...||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcC
Confidence 999999877 5799999976421 123566788888888887665432 347999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEec
Q 000789 1198 PKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259 (1283)
Q Consensus 1198 p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1259 (1283)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999875 47899999999999876 9999999999999875
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=381.66 Aligned_cols=220 Identities=27% Similarity=0.443 Sum_probs=189.5
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCcceEEECCccCCC--CC
Q 000789 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLDNIELPK--FK 1110 (1283)
Q Consensus 1038 g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~ 1110 (1283)
..|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 46999999999963 469999999999999999999999999999999999997 589999999999864 34
Q ss_pred hHHHhcceEEEccCCCCChhhHHHHHhcCCC-CCC-C----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhH
Q 000789 1111 LSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA-T----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQ 1184 (1283)
Q Consensus 1111 ~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~-s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1184 (1283)
...+|+.++||||++.+|..|++||+.++.. ... + ++++.++++..++.+++. +........|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHH
Confidence 5677899999999999999999999986421 111 2 234566677777654432 23445667899999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHH
Q 000789 1185 KQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDA 1263 (1283)
Q Consensus 1185 rQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~e 1263 (1283)
|||++||||++++|++|||||||++||+.+...+.+.|+++.++.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998777899999999998865 99999999999999999999
Q ss_pred HHhc
Q 000789 1264 LMKI 1267 (1283)
Q Consensus 1264 Ll~~ 1267 (1283)
+.+.
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 9764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=388.40 Aligned_cols=214 Identities=26% Similarity=0.457 Sum_probs=183.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999973 46999999999999999999999999999999999999999999999999997654 4578999
Q ss_pred EEEccCCCCCh-hhHHHHHhcC-CCCCCCHHH----HHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHH
Q 000789 1119 GLVSQEPVLFN-ETIRTNIAYG-KQGGATEEE----IIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~-gTIreNl~~g-~~~~~sd~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiAR 1192 (1283)
+||||++.+|. .|++||+.+. .....+..+ +.++++..++ +...++.++ +||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~----~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL-------ENKADAKVG----ELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chHhcCchh----hCCHHHHHHHHHHH
Confidence 99999999885 6999999752 111223332 3344444443 334455554 79999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1193 AVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1193 All~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
||+.+|++|||||||++||+.+.+.+++.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999875 47899999999999976 999999999999999999999764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=381.95 Aligned_cols=220 Identities=33% Similarity=0.526 Sum_probs=186.2
Q ss_pred cccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccCC--C
Q 000789 372 EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIKK--L 444 (1283)
Q Consensus 372 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~ 444 (1283)
.+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 3699999999999999999999999999999999999975 89999999999864 3
Q ss_pred CHHHHhcccEEEccCCCCCcccHHHHHhcCCC--CC--CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 000789 445 QLKWIREKIGLVSQEPILFATSLRENIAYGKE--NA--TD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSG 516 (1283)
Q Consensus 445 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~--~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 516 (1283)
+...+|+.++|++|++.+|+.|+.||+.++.. .. +. +++.++++..++.+++ .+..+..+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-------KDRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCH
Confidence 45567889999999999998899999987531 10 11 2233344443332221 1244567789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecCh
Q 000789 517 GQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTH 595 (1283)
Q Consensus 517 GqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~ 595 (1283)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998777899999999999865 999999999999999999
Q ss_pred hHHhcC
Q 000789 596 DELIKD 601 (1283)
Q Consensus 596 ~~l~~~ 601 (1283)
+++...
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 998765
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=379.60 Aligned_cols=221 Identities=27% Similarity=0.430 Sum_probs=186.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC--C---CcceEEECCccCCCC--Ch
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD--P---DSGHVLLDNIELPKF--KL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--~---~~G~I~idG~di~~~--~~ 1111 (1283)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999974 359999999999999999999999999999999999954 6 489999999998643 34
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC--CCC----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ--GGA----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~~~----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
..+|+.++||||++.+|+.|++||+.++.. +.. .++++.++++.+++.+.+. +.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 567889999999999999999999986411 111 1234555666666544332 223445568999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
||++||||++++|++|||||||++||+++...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767999999999998865 999999999999999999999
Q ss_pred HhccC
Q 000789 1265 MKITD 1269 (1283)
Q Consensus 1265 l~~~~ 1269 (1283)
.+.+.
T Consensus 235 ~~~~~ 239 (252)
T PRK14239 235 FMNPK 239 (252)
T ss_pred HhCCC
Confidence 87533
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=380.55 Aligned_cols=224 Identities=29% Similarity=0.455 Sum_probs=187.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCcceEEECCccCCC--CCh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLDNIELPK--FKL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~~ 1111 (1283)
.|+++||+|+|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999974 359999999999999999999999999999999999997 479999999999854 344
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC-CCC-----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA-----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~-----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
..+|+.++|++|++.+|+.|++||+.++.. ... .++++.++++..++++.. + ........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~----~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---K----DNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---H----HHhccChhhCCHHHH
Confidence 567889999999999999999999986421 111 123455566665553211 1 112344568999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
||++||||++++|++|||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999876 999999999999999999999
Q ss_pred HhccCchh
Q 000789 1265 MKITDGAY 1272 (1283)
Q Consensus 1265 l~~~~g~y 1272 (1283)
...+...|
T Consensus 234 ~~~~~~~~ 241 (251)
T PRK14251 234 FIAPKKQI 241 (251)
T ss_pred HhCCCCHH
Confidence 76534333
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=365.92 Aligned_cols=203 Identities=36% Similarity=0.613 Sum_probs=180.4
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcc
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREK 452 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 452 (1283)
+.|+++|++++|++. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 569999999999742 2369999999999999999999999999999999999999999999999999988888788889
Q ss_pred cEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000789 453 IGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNP 532 (1283)
Q Consensus 453 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~ 532 (1283)
|+||+|++.+|++|++||+.+... .+.+++.++++ +++++..||||||||++||||++.+|
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999987542 33333333222 34567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecCh
Q 000789 533 KILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTH 595 (1283)
Q Consensus 533 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~ 595 (1283)
+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999998778999999999999878999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=396.82 Aligned_cols=221 Identities=29% Similarity=0.478 Sum_probs=187.1
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999876543 5689
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhc
Q 000789 454 GLVSQEPILFAT-SLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILK 530 (1283)
Q Consensus 454 ~~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~ 530 (1283)
+||+|++.+|+. ||+||+.|+... .+.++..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 999999987431 12222111 122344444 56555666678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCCChh
Q 000789 531 NPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPY 606 (1283)
Q Consensus 531 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~ 606 (1283)
+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++...+...+
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~ 229 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRF 229 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 9999999999999999999999999998753 6899999999998865 99999999999999999999987654333
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=381.59 Aligned_cols=221 Identities=31% Similarity=0.498 Sum_probs=189.9
Q ss_pred cccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CcceEEECCccCCC--C
Q 000789 1037 GGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-----DSGHVLLDNIELPK--F 1109 (1283)
Q Consensus 1037 ~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~ 1109 (1283)
.+.|+++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999964 3599999999999999999999999999999999999984 89999999999864 3
Q ss_pred ChHHHhcceEEEccCCCCChhhHHHHHhcCCC-CCC-C----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChh
Q 000789 1110 KLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA-T----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGG 1183 (1283)
Q Consensus 1110 ~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~-s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1183 (1283)
+...+|+.++|+||++.+|+.|++||+.++.. ... . ++++.++++.+++.+.+. +..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 45678899999999999999999999976411 111 1 234666777666654433 2344556789999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChH
Q 000789 1184 QKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHD 1262 (1283)
Q Consensus 1184 QrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~ 1262 (1283)
||||++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999998778899999999999865 9999999999999999999
Q ss_pred HHHhc
Q 000789 1263 ALMKI 1267 (1283)
Q Consensus 1263 eLl~~ 1267 (1283)
++...
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 99864
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=369.20 Aligned_cols=200 Identities=28% Similarity=0.501 Sum_probs=174.0
Q ss_pred EEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEE
Q 000789 1041 ELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGL 1120 (1283)
Q Consensus 1041 ~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~ 1120 (1283)
+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ..+|++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999741 359999999999999999999999999999999999999999999999998854 456789999
Q ss_pred EccCC--CCChhhHHHHHhcCCCC-CCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccC
Q 000789 1121 VSQEP--VLFNETIRTNIAYGKQG-GATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKN 1197 (1283)
Q Consensus 1121 V~Qdp--~Lf~gTIreNl~~g~~~-~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~ 1197 (1283)
+||+| .+|..|++||+.++... ...++++.++++..++.++..+.| ..||||||||++||||++++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 46789999999875221 122356788888888876654443 37999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEE
Q 000789 1198 PKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIA 1256 (1283)
Q Consensus 1198 p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Iv 1256 (1283)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999873 57899999999999976 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=384.06 Aligned_cols=223 Identities=35% Similarity=0.550 Sum_probs=182.3
Q ss_pred EEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHH----hc
Q 000789 376 ELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWI----RE 451 (1283)
Q Consensus 376 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----r~ 451 (1283)
.++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 46678888853 458999999999999999999999999999999999999999999999999987765443 46
Q ss_pred ccEEEccCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 000789 452 KIGLVSQEPILFA-TSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAI 528 (1283)
Q Consensus 452 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal 528 (1283)
+++|++|++.+|. .|++||+.++... ....+..+ .+.+.++.+ |++..+.....+||||||||++|||||
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREE-----RAAEALELV--GLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 7999999999885 5999999875321 11111111 112333333 444444555678999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCCCh
Q 000789 529 LKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGP 605 (1283)
Q Consensus 529 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~ 605 (1283)
+++|+||||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++++.+...
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 255 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPAND 255 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcH
Confidence 999999999999999999999999999998753 6899999999999865 9999999999999999999998764444
Q ss_pred hHH
Q 000789 606 YTQ 608 (1283)
Q Consensus 606 ~~~ 608 (1283)
|.+
T Consensus 256 ~~~ 258 (269)
T cd03294 256 YVR 258 (269)
T ss_pred HHH
Confidence 443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=379.58 Aligned_cols=222 Identities=28% Similarity=0.460 Sum_probs=187.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc---CCC--CcceEEECCccCCCC--Ch
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERF---YDP--DSGHVLLDNIELPKF--KL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl---~~~--~~G~I~idG~di~~~--~~ 1111 (1283)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999974 3599999999999999999999999999999999997 444 589999999998754 34
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC-CCC-----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA-----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~-----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
..+|+.++||||++.+|..|++||+.++.. ... .++++.++++..++.+++. +.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 577889999999999999999999976421 111 1234556666666544332 233455678999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred HhccCc
Q 000789 1265 MKITDG 1270 (1283)
Q Consensus 1265 l~~~~g 1270 (1283)
.+.+..
T Consensus 233 ~~~~~~ 238 (250)
T PRK14245 233 FTNPEK 238 (250)
T ss_pred hcCCCC
Confidence 875333
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=395.50 Aligned_cols=219 Identities=29% Similarity=0.496 Sum_probs=188.8
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcc
Q 000789 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQ 1117 (1283)
Q Consensus 1038 g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1117 (1283)
..|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.+. .|+.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 358999999999999999999999999999999999999999999999999987664 5789
Q ss_pred eEEEccCCCCChh-hHHHHHhcCCC-CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHH
Q 000789 1118 MGLVSQEPVLFNE-TIRTNIAYGKQ-GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIA 1191 (1283)
Q Consensus 1118 i~~V~Qdp~Lf~g-TIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiA 1191 (1283)
++||+|++.+|.. |++|||.|+.. ...+. +++.++++..++.++..+.| .+||||||||+|||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999964 99999998632 12232 34556666666665544433 47999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhcc
Q 000789 1192 RAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKIT 1268 (1283)
Q Consensus 1192 RAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~ 1268 (1283)
|||+++|++||||||||+||+.+...+.+.|+++. .+.|+|+|||+++.+.. ||+|++|++|++++.|+++|+..++
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999998887764 36899999999998765 9999999999999999999999876
Q ss_pred Cchh
Q 000789 1269 DGAY 1272 (1283)
Q Consensus 1269 ~g~y 1272 (1283)
...|
T Consensus 242 ~~~~ 245 (377)
T PRK11607 242 TTRY 245 (377)
T ss_pred ccHH
Confidence 6544
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=373.82 Aligned_cols=215 Identities=28% Similarity=0.503 Sum_probs=181.1
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++||++.|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5789999999642 146999999999999999999999999999999999999999999999999986543 56678899
Q ss_pred EEccCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 455 LVSQEPILF-ATSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 455 ~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
||+|++.+| ..|++||+.++.. ....++..+ .+++.++.+ |++........+||||||||++|||||+.+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 999999988 4699999987421 112221111 123344444 555445566678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999998777999999999999875 999999999999999998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=378.90 Aligned_cols=227 Identities=28% Similarity=0.457 Sum_probs=190.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CcceEEECCccCCCC--Ch
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-----DSGHVLLDNIELPKF--KL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~--~~ 1111 (1283)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999973 3599999999999999999999999999999999999984 899999999998653 34
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC--CCC----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ--GGA----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~~~----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
..+|+.++|+||+|.+|..|++||+.++.. ... .++++.++++..++.+.+. ........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 567889999999999999999999986421 111 2234566677766654332 223455668999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
||++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999998778999999999998765 999999999999999999999
Q ss_pred HhccCchhHHH
Q 000789 1265 MKITDGAYASL 1275 (1283)
Q Consensus 1265 l~~~~g~y~~L 1275 (1283)
.+.+...|.+.
T Consensus 233 ~~~~~~~~~~~ 243 (250)
T PRK14262 233 VERPKNKLTEE 243 (250)
T ss_pred HhCCCChHHHH
Confidence 87544445443
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=372.05 Aligned_cols=207 Identities=38% Similarity=0.613 Sum_probs=175.0
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999963 369999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEccCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 455 LVSQEPILFA-TSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 455 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
|++|++.+|. .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 5999999875321 11211111 123444554 566556666789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEec
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKG 593 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 593 (1283)
|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999998753 7899999999999865 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=378.01 Aligned_cols=225 Identities=31% Similarity=0.464 Sum_probs=185.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCC--------h
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK--------L 1111 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~--------~ 1111 (1283)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999974 35999999999999999999999999999999999999999999999999986542 3
Q ss_pred HHHhcceEEEccCCCCCh-hhHHHHHhcCCC--CCCCHH----HHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhH
Q 000789 1112 SWLRQQMGLVSQEPVLFN-ETIRTNIAYGKQ--GGATEE----EIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQ 1184 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~-gTIreNl~~g~~--~~~sd~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1184 (1283)
..+|++++||||++.+|. .|++||+.++.. .....+ .+.++++..+ ++........+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVG-----------LAGKETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CcchhhCChhhCChHH
Confidence 467889999999998885 699999976411 112222 2333343333 3333344566899999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChH
Q 000789 1185 KQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHD 1262 (1283)
Q Consensus 1185 rQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~ 1262 (1283)
|||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 37899999999999976 9999999999999999999
Q ss_pred HHHhccCchh-HHHHHH
Q 000789 1263 ALMKITDGAY-ASLVAL 1278 (1283)
Q Consensus 1263 eLl~~~~g~y-~~L~~~ 1278 (1283)
++.+.+.-.| +.++..
T Consensus 230 ~~~~~~~~~~~~~~~~~ 246 (250)
T PRK11264 230 ALFADPQQPRTRQFLEK 246 (250)
T ss_pred HHhcCCCCHHHHHHHHh
Confidence 9976433233 444433
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=377.56 Aligned_cols=220 Identities=31% Similarity=0.525 Sum_probs=183.0
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCH---HHHhc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL---KWIRE 451 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r~ 451 (1283)
|+++||+++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2469999999999999999999999999999999999999999999999999877654 34678
Q ss_pred ccEEEccCCCCCc-ccHHHHHhcCCCCCC--HHHH---HHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000789 452 KIGLVSQEPILFA-TSLRENIAYGKENAT--DQEI---RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIA 525 (1283)
Q Consensus 452 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~--~~~~---~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiA 525 (1283)
+++|++|++.+|. .|++||+.++..... .... ........+.+.++.+ |++......+.+||||||||++||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHH
Confidence 8999999999887 599999987642110 0000 0000111233445555 666666777889999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 526 RAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 526 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999998753 6899999999999865 999999999999999998886
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=382.71 Aligned_cols=216 Identities=32% Similarity=0.568 Sum_probs=186.2
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999642 24699999999999999999999999999999999999999999999999999888777788899
Q ss_pred EEEccCC--CCCcccHHHHHhcCCCC--CCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000789 454 GLVSQEP--ILFATSLRENIAYGKEN--ATDQ----EIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIA 525 (1283)
Q Consensus 454 ~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiA 525 (1283)
+|++|++ .+++.||+|||.++... .+.+ ++.++++.. |++..+......||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQV-----------GMEDFLNREPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHc-----------CChhhhhCCcccCCHHHHHHHHHH
Confidence 9999998 45677999999986321 1222 233344444 444444555569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcC
Q 000789 526 RAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 526 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998864 6899999999999988999999999999999999988764
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=377.61 Aligned_cols=224 Identities=26% Similarity=0.466 Sum_probs=188.6
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC--C---CcceEEECCccCCCC--C
Q 000789 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD--P---DSGHVLLDNIELPKF--K 1110 (1283)
Q Consensus 1038 g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--~---~~G~I~idG~di~~~--~ 1110 (1283)
+.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999973 359999999999999999999999999999999999986 4 689999999998653 3
Q ss_pred hHHHhcceEEEccCCCCCh-hhHHHHHhcCCC--CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChh
Q 000789 1111 LSWLRQQMGLVSQEPVLFN-ETIRTNIAYGKQ--GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGG 1183 (1283)
Q Consensus 1111 ~~~lR~~i~~V~Qdp~Lf~-gTIreNl~~g~~--~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1183 (1283)
...+|++++|+||++.+|. .|++||+.++.. ...+ ++++.++++..++.+++.. .....+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 4567899999999999987 699999976411 1112 2345566666666544322 223455689999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChH
Q 000789 1184 QKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHD 1262 (1283)
Q Consensus 1184 QrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~ 1262 (1283)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999999865 9999999999999999999
Q ss_pred HHHhccCch
Q 000789 1263 ALMKITDGA 1271 (1283)
Q Consensus 1263 eLl~~~~g~ 1271 (1283)
++...+...
T Consensus 233 ~~~~~~~~~ 241 (252)
T PRK14256 233 KIFTTPEKK 241 (252)
T ss_pred HHHhCCCcH
Confidence 998654443
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=373.59 Aligned_cols=205 Identities=35% Similarity=0.476 Sum_probs=172.6
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHH----H
Q 000789 1040 IELRCVSFKYPTRP-DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW----L 1114 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~----l 1114 (1283)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997421 146999999999999999999999999999999999999999999999999998776432 4
Q ss_pred hcceEEEccCCCCChh-hHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHH
Q 000789 1115 RQQMGLVSQEPVLFNE-TIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRI 1188 (1283)
Q Consensus 1115 R~~i~~V~Qdp~Lf~g-TIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1188 (1283)
|++++|+||++.+|.. |++||+.++.. .... ++++.++++..++.+. ......+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDR-----------LNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------hhcChhhcCHHHHHHH
Confidence 6789999999999876 99999987421 1122 2344555555555433 3334458999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhhcCEEEEEeCCEE
Q 000789 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKNADIIAVVKNGVI 1255 (1283)
Q Consensus 1189 aiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~D~I~vl~~G~I 1255 (1283)
+|||||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998764 7899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=374.31 Aligned_cols=217 Identities=25% Similarity=0.439 Sum_probs=181.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHH-hcce
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWL-RQQM 1118 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~i 1118 (1283)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999974 359999999999999999999999999999999999999999999999999987776553 5689
Q ss_pred EEEccCCCCChh-hHHHHHhcCCC-CCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHcc
Q 000789 1119 GLVSQEPVLFNE-TIRTNIAYGKQ-GGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLK 1196 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~g-TIreNl~~g~~-~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~ 1196 (1283)
+|+||++.+|.+ |++||+.++.. .....++..+ .+.+++..+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 99999986421 1122222111 112333333 44444455566899999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHh
Q 000789 1197 NPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1197 ~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1266 (1283)
+|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 47899999999987766 99999999999999999999865
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=375.78 Aligned_cols=213 Identities=25% Similarity=0.421 Sum_probs=182.8
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHH-Hhcce
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW-LRQQM 1118 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~-lR~~i 1118 (1283)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+... .|+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999974 35999999999999999999999999999999999999999999999999998777654 35679
Q ss_pred EEEccCCCCChh-hHHHHHhcCCCCC---------C----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhH
Q 000789 1119 GLVSQEPVLFNE-TIRTNIAYGKQGG---------A----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQ 1184 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~g-TIreNl~~g~~~~---------~----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1184 (1283)
+|+||++.+|.+ |++||+.++.... . .++++.++++..+ ++.........|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIG-----------LADEADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcC-----------CchhhcCChhhCCHHH
Confidence 999999999986 9999998742110 0 1123333444333 4333445556899999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHH
Q 000789 1185 KQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDA 1263 (1283)
Q Consensus 1185 rQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~e 1263 (1283)
|||++||||++++|++|||||||++||+++...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999998778899999999999976 99999999999999999999
Q ss_pred HHh
Q 000789 1264 LMK 1266 (1283)
Q Consensus 1264 Ll~ 1266 (1283)
+..
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=379.53 Aligned_cols=218 Identities=29% Similarity=0.467 Sum_probs=183.7
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccC--CCCH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIK--KLQL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~--~~~~ 446 (1283)
.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.+||+++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999987 4999999999986 4455
Q ss_pred HHHhcccEEEccCCCCCcc-cHHHHHhcCCC--C--CCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 000789 447 KWIREKIGLVSQEPILFAT-SLRENIAYGKE--N--ATDQ----EIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGG 517 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~--~--~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 517 (1283)
..+|++++|++|++.+|+. |+.||+.++.. . ...+ ++.++++..++.++ +.......+.+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE-------VKDRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccc-------hhhhhccChhhCCHH
Confidence 5678899999999999976 99999987531 1 0122 22333333322211 123356677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChh
Q 000789 518 QKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHD 596 (1283)
Q Consensus 518 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~ 596 (1283)
||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999999875 9999999999999999999
Q ss_pred HHhcC
Q 000789 597 ELIKD 601 (1283)
Q Consensus 597 ~l~~~ 601 (1283)
++...
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 98765
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=378.72 Aligned_cols=219 Identities=27% Similarity=0.434 Sum_probs=185.4
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCC--------
Q 000789 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF-------- 1109 (1283)
Q Consensus 1038 g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~-------- 1109 (1283)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999974 3599999999999999999999999999999999999999999999999988642
Q ss_pred -----ChHHHhcceEEEccCCCCCh-hhHHHHHhcCCC--CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCC
Q 000789 1110 -----KLSWLRQQMGLVSQEPVLFN-ETIRTNIAYGKQ--GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERG 1177 (1283)
Q Consensus 1110 -----~~~~lR~~i~~V~Qdp~Lf~-gTIreNl~~g~~--~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G 1177 (1283)
....+|++++||||++.+|. .|++||+.++.. .... ++++.++++..++.+.. .....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 13467889999999999997 599999976311 1112 23445555555554332 13445
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEE
Q 000789 1178 VQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVI 1255 (1283)
Q Consensus 1178 ~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~I 1255 (1283)
..||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 6899999999999999999999999999999999999999999999875 47999999999999986 999999999999
Q ss_pred EEecChHHHHhccC
Q 000789 1256 AEQGSHDALMKITD 1269 (1283)
Q Consensus 1256 ve~Gt~~eLl~~~~ 1269 (1283)
++.|+++++.+.+.
T Consensus 231 ~~~~~~~~~~~~~~ 244 (257)
T PRK10619 231 EEEGAPEQLFGNPQ 244 (257)
T ss_pred EEeCCHHHhhhCcc
Confidence 99999999986533
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=377.54 Aligned_cols=219 Identities=34% Similarity=0.530 Sum_probs=184.7
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccCCCCHHH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIKKLQLKW 448 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~~~~ 448 (1283)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999964 3599999999999999999999999999999999999974 6999999999998888778
Q ss_pred HhcccEEEccCCCCC-cccHHHHHhcCCCC----CCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 000789 449 IREKIGLVSQEPILF-ATSLRENIAYGKEN----ATD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519 (1283)
Q Consensus 449 ~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~----~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 519 (1283)
+|+.|+|++|++.+| ..|++||+.++... ... +++.++++..++.+. ++........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDE-------VKDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcc-------hhhhhcCCcccCCHHHH
Confidence 889999999999765 56999999875321 111 122333333332211 12234566789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999998
Q ss_pred hcCC
Q 000789 599 IKDP 602 (1283)
Q Consensus 599 ~~~~ 602 (1283)
.+.+
T Consensus 233 ~~~~ 236 (250)
T PRK14247 233 FTNP 236 (250)
T ss_pred HcCC
Confidence 7653
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=376.46 Aligned_cols=219 Identities=31% Similarity=0.523 Sum_probs=187.6
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCC-----cceEEECCccCCC--CCh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD-----SGHVLLDNIELPK--FKL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~-----~G~I~idG~di~~--~~~ 1111 (1283)
.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999974 35999999999999999999999999999999999999997 6999999999864 345
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC-CCCC-----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGAT-----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~s-----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
..+|+.++||||+|.+|+.|++||+.++.. .... ++.+.++++..++++.+. ......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 678899999999999999999999987521 1111 233445556566554432 234456678999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667999999999999877 899999999999999999999
Q ss_pred Hhc
Q 000789 1265 MKI 1267 (1283)
Q Consensus 1265 l~~ 1267 (1283)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 764
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=374.89 Aligned_cols=216 Identities=28% Similarity=0.496 Sum_probs=186.2
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHH-Hhccc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW-IREKI 453 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 453 (1283)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999963 35999999999999999999999999999999999999999999999999988776554 35679
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhc
Q 000789 454 GLVSQEPILFAT-SLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILK 530 (1283)
Q Consensus 454 ~~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~ 530 (1283)
+|++|++.+|+. |++||+.++.+. ...++.. ..+++.++.+ |++........+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 999999875321 1121111 1234556666 77777788888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhc
Q 000789 531 NPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600 (1283)
Q Consensus 531 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 600 (1283)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999998754 6899999999988765 99999999999999999988764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=380.66 Aligned_cols=217 Identities=28% Similarity=0.485 Sum_probs=187.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 49999999999753 24599999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCC--CChhhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHH
Q 000789 1119 GLVSQEPV--LFNETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIA 1191 (1283)
Q Consensus 1119 ~~V~Qdp~--Lf~gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiA 1191 (1283)
+||||+|. ++..|+++|+.++.. ...+ ++++.++++..++.++.. ....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHH
Confidence 99999984 556789999977521 1122 234556666666554432 23458999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhc
Q 000789 1192 RAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1192 RAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 6899999999999988999999999999999999998764
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=380.53 Aligned_cols=215 Identities=29% Similarity=0.501 Sum_probs=185.5
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCC-hHHHhcce
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK-LSWLRQQM 1118 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~-~~~lR~~i 1118 (1283)
|+++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 7899999999632 35999999999999999999999999999999999999999999999999998765 46778899
Q ss_pred EEEccCCC--CChhhHHHHHhcCCCC-CCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHH
Q 000789 1119 GLVSQEPV--LFNETIRTNIAYGKQG-GAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIA 1191 (1283)
Q Consensus 1119 ~~V~Qdp~--Lf~gTIreNl~~g~~~-~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiA 1191 (1283)
+||||+|. +++.|++||+.++... ..+ ++++.++++..++.++... ....||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHH
Confidence 99999985 6778999999875211 122 2345556666666554433 3458999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhhcCEEEEEeCCEEEEecChHHHHhc
Q 000789 1192 RAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1192 RAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
|||+.+|+||||||||++||+.+...+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998865 47899999999999988999999999999999999998753
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=392.47 Aligned_cols=223 Identities=32% Similarity=0.541 Sum_probs=188.9
Q ss_pred cccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhc
Q 000789 372 EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451 (1283)
Q Consensus 372 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 451 (1283)
...|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.++ .++
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r 91 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQR 91 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHC
Confidence 345999999999963 358999999999999999999999999999999999999999999999999987664 467
Q ss_pred ccEEEccCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 000789 452 KIGLVSQEPILFAT-SLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAI 528 (1283)
Q Consensus 452 ~i~~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal 528 (1283)
.||||+|++.+|+. ||+|||.|+... .+..+..+ .+.+.++.+ |++........+|||||||||+|||||
T Consensus 92 ~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL 164 (377)
T PRK11607 92 PINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSL 164 (377)
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 89999999999976 999999987431 22222221 122334444 555556666789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCCCh
Q 000789 529 LKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGP 605 (1283)
Q Consensus 529 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~ 605 (1283)
+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++|+..++...
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~ 244 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTR 244 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccH
Confidence 999999999999999999999999988887643 6899999999999765 9999999999999999999999875544
Q ss_pred h
Q 000789 606 Y 606 (1283)
Q Consensus 606 ~ 606 (1283)
|
T Consensus 245 ~ 245 (377)
T PRK11607 245 Y 245 (377)
T ss_pred H
Confidence 4
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=381.15 Aligned_cols=217 Identities=30% Similarity=0.520 Sum_probs=186.4
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
-|+++||+++|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334599999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEccCCC--CCcccHHHHHhcCCC--CCCHHH----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000789 454 GLVSQEPI--LFATSLRENIAYGKE--NATDQE----IRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIA 525 (1283)
Q Consensus 454 ~~v~Q~~~--l~~~ti~~ni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiA 525 (1283)
+|++|++. ++..|+.|||.++.. ..+.++ +.++++.++ ++.........||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVN-----------MLDFKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCC-----------CHhHhhCCcccCCHHHHHHHHHH
Confidence 99999983 667899999987532 123333 233344433 33334445679999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcC
Q 000789 526 RAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 526 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+..||+|++|++|++++.|++++++..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998864 7899999999999988999999999999999999998764
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=373.36 Aligned_cols=216 Identities=31% Similarity=0.525 Sum_probs=186.4
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+... ++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 36999999999999999999999999999999999999999999999999987766544 45899
Q ss_pred EEccCCCCC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 455 LVSQEPILF-ATSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 455 ~v~Q~~~l~-~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
|++|++.++ ..|++||+.++... ....+.. ..+.++++.+ |++......+.+||||||||++|||||+++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999875 56999999875321 1222211 1234556666 777777888889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcC
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999885 37899999999999988999999999999999999988764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=378.46 Aligned_cols=221 Identities=29% Similarity=0.487 Sum_probs=190.2
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999973 36999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCCChh-hHHHHHhcCCC------C---CCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHH
Q 000789 1120 LVSQEPVLFNE-TIRTNIAYGKQ------G---GATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIA 1189 (1283)
Q Consensus 1120 ~V~Qdp~Lf~g-TIreNl~~g~~------~---~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1189 (1283)
|+||++.+|.+ |+.||+.++.. . ...++++.++++..++.++... ....||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHHH
Confidence 99999998866 99999987521 0 1123356667777776554433 34589999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1190 IARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1190 iARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 9999999999999999999999999999999998875 47899999999999865 999999999999999999998753
Q ss_pred cCchhHHHH
Q 000789 1268 TDGAYASLV 1276 (1283)
Q Consensus 1268 ~~g~y~~L~ 1276 (1283)
..+.+.+
T Consensus 229 --~~~~~~~ 235 (255)
T PRK11231 229 --GLLRTVF 235 (255)
T ss_pred --HHHHHHh
Confidence 3344444
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=395.64 Aligned_cols=210 Identities=39% Similarity=0.598 Sum_probs=176.9
Q ss_pred ccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHH----hcccEEEccCCCCCcc-c
Q 000789 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWI----REKIGLVSQEPILFAT-S 466 (1283)
Q Consensus 392 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~~-t 466 (1283)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+...+ +++++||+|++.+|+. |
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 7999999999999999999999999999999999999999999999999988776543 4689999999999975 9
Q ss_pred HHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 000789 467 LRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544 (1283)
Q Consensus 467 i~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~l 544 (1283)
++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||||+.+|++|||||||++|
T Consensus 123 v~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~--gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~L 195 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERRE-----KALDALRQV--GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSAL 195 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 99999986321 12211111 122344444 5555556666799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCCChhHH
Q 000789 545 DAESERIVQDALVKIM--TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608 (1283)
Q Consensus 545 D~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~ 608 (1283)
|+.+.+.+++.|.++. .++|+|+|||+++.+.. ||+|++|++|+|++.|++++++.++...|.+
T Consensus 196 D~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v~ 262 (400)
T PRK10070 196 DPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262 (400)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHHH
Confidence 9999999999999875 37899999999999865 9999999999999999999998765444543
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=373.52 Aligned_cols=218 Identities=26% Similarity=0.472 Sum_probs=193.3
Q ss_pred CccccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHH
Q 000789 370 KIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWI 449 (1283)
Q Consensus 370 ~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~ 449 (1283)
...+.|+++|+++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 35 ~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----------- 98 (282)
T cd03291 35 SDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----------- 98 (282)
T ss_pred CCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----------
Confidence 345679999999952 3599999999999999999999999999999999999999999999998
Q ss_pred hcccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 000789 450 REKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAIL 529 (1283)
Q Consensus 450 r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~ 529 (1283)
.|+|++|++.+|+.|++||+.++.. ....++.++++..++.+.+..+|.++++.+++.+..||||||||++|||||+
T Consensus 99 --~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~ 175 (282)
T cd03291 99 --RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVY 175 (282)
T ss_pred --EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 4999999999999999999998643 2334556667777888899999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcCCCChhH
Q 000789 530 KNPKILLLDEATSALDAESERIVQDAL-VKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYT 607 (1283)
Q Consensus 530 ~~~~illlDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 607 (1283)
.+|++|||||||++||+.+...+.+.+ +.+.+++|+|++||+++.+..||++++|++|++++.|+++++... ...|.
T Consensus 176 ~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~ 253 (282)
T cd03291 176 KDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFS 253 (282)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHH
Confidence 999999999999999999999888754 556567899999999999988999999999999999999998764 33444
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=371.14 Aligned_cols=206 Identities=32% Similarity=0.492 Sum_probs=173.0
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHH---Hh
Q 000789 1040 IELRCVSFKYPTRP-DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW---LR 1115 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---lR 1115 (1283)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999997421 146999999999999999999999999999999999999999999999999998877544 34
Q ss_pred -cceEEEccCCCCCh-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHH
Q 000789 1116 -QQMGLVSQEPVLFN-ETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRI 1188 (1283)
Q Consensus 1116 -~~i~~V~Qdp~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1188 (1283)
+.++||||++.+|. .|++||+.++.. ...+ ++++.++++..++.+. .......||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHR-----------INHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHH
Confidence 68999999999885 699999976311 1122 2234455555544433 3334458999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhhcCEEEEEeCCEEE
Q 000789 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKNADIIAVVKNGVIA 1256 (1283)
Q Consensus 1189 aiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~D~I~vl~~G~Iv 1256 (1283)
+||||++++|+||||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999999999998753 78999999999999889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=374.85 Aligned_cols=214 Identities=33% Similarity=0.500 Sum_probs=182.3
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCC--ChHHHhcc
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF--KLSWLRQQ 1117 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~--~~~~lR~~ 1117 (1283)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999973 3599999999999999999999999999999999999999999999999998764 34567889
Q ss_pred eEEEccCCCCCh-hhHHHHHhcCCC--CCCCHH----HHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHH
Q 000789 1118 MGLVSQEPVLFN-ETIRTNIAYGKQ--GGATEE----EIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAI 1190 (1283)
Q Consensus 1118 i~~V~Qdp~Lf~-gTIreNl~~g~~--~~~sd~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlai 1190 (1283)
++|+||++.+|. .|++||+.++.. ...+.+ ++.++++..++ +.........||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGL-----------AERAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hHHHhcChhhcCHHHHHHHHH
Confidence 999999998885 699999987521 112222 23344444444 333344456899999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1191 ARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1191 ARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
|||++++|++|||||||++||+++...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999998875 47899999999999965 999999999999999999998764
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=369.78 Aligned_cols=204 Identities=31% Similarity=0.524 Sum_probs=175.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999974 3599999999999999999999999999999999999999999999999998765543 57899
Q ss_pred EEccCCCCCh-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1120 LVSQEPVLFN-ETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qdp~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
|+||++.+|. .|++||+.++.. ...+ ++++.++++..++.++.... ..+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRK-----------PKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCC-----------hhhCCHHHHHHHHHHHH
Confidence 9999999885 699999986411 1122 23455566666666554433 34799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEec
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1259 (1283)
++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+++++|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999998753 7899999999999876 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=387.18 Aligned_cols=229 Identities=24% Similarity=0.346 Sum_probs=186.5
Q ss_pred cEEEEEEEEECCCCCC-cccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC----CCcceEEECCccCCCCChHH
Q 000789 1039 AIELRCVSFKYPTRPD-VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD----PDSGHVLLDNIELPKFKLSW 1113 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~-~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~----~~~G~I~idG~di~~~~~~~ 1113 (1283)
-|+++||+++|+.+.. ..+|+||||+|++||.+||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3899999999975322 369999999999999999999999999999999999998 48999999999999888766
Q ss_pred Hhc----ceEEEccCCC--CCh-hhHHHH----HhcCC--CCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCC
Q 000789 1114 LRQ----QMGLVSQEPV--LFN-ETIRTN----IAYGK--QGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQL 1180 (1283)
Q Consensus 1114 lR~----~i~~V~Qdp~--Lf~-gTIreN----l~~g~--~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~L 1180 (1283)
+|+ .|+||||+|. ++. .|+.+| +.... ......+++.++++.+++.+... .......+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPAS--------RLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhCCchhC
Confidence 543 6999999994 332 355544 43211 00112345667777777753211 123445689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEE
Q 000789 1181 SGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAE 1257 (1283)
Q Consensus 1181 SgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive 1257 (1283)
|||||||++|||||+.+|++||+|||||+||+.+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||.+|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 7899999999999964 99999999999999
Q ss_pred ecChHHHHhccCchhHHH
Q 000789 1258 QGSHDALMKITDGAYASL 1275 (1283)
Q Consensus 1258 ~Gt~~eLl~~~~g~y~~L 1275 (1283)
.|+++++++++...|.+.
T Consensus 235 ~g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQA 252 (326)
T ss_pred ECCHHHHhhCCCChHHHH
Confidence 999999998766667643
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=377.78 Aligned_cols=222 Identities=27% Similarity=0.465 Sum_probs=189.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCcceEEECCccCCC--CCh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLDNIELPK--FKL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~~ 1111 (1283)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++. |++|+|.+||.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4999999999974 359999999999999999999999999999999999986 479999999998853 455
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC-CCC---CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA---TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQR 1187 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~---sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1187 (1283)
..+|++++||+|++.+|+.|++||+.++.. ... .++++.++++.+++.+.+.. .....+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 678899999999999998999999987521 111 23445666777777655432 2344566899999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEe---------CCEEEE
Q 000789 1188 IAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVK---------NGVIAE 1257 (1283)
Q Consensus 1188 laiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~---------~G~Ive 1257 (1283)
++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998777899999999998866 99999998 899999
Q ss_pred ecChHHHHhccCc
Q 000789 1258 QGSHDALMKITDG 1270 (1283)
Q Consensus 1258 ~Gt~~eLl~~~~g 1270 (1283)
.|+++|+.+.+..
T Consensus 240 ~~~~~~~~~~~~~ 252 (264)
T PRK14243 240 FDRTEKIFNSPQQ 252 (264)
T ss_pred eCCHHHHHhCCCc
Confidence 9999999865433
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=372.36 Aligned_cols=208 Identities=38% Similarity=0.537 Sum_probs=176.1
Q ss_pred EEEEEEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHH----HH
Q 000789 375 IELRDVYFRYPARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLK----WI 449 (1283)
Q Consensus 375 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~----~~ 449 (1283)
|+++||+++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996421 14699999999999999999999999999999999999999999999999998876643 24
Q ss_pred hcccEEEccCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000789 450 REKIGLVSQEPILFAT-SLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526 (1283)
Q Consensus 450 r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiAR 526 (1283)
+++++|++|++.+|.. |++||+.++... ....+. ...+.+.++.+ |++......+.+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5789999999999876 999999986421 111111 11234455555 6766677778899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEE
Q 000789 527 AILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRNADLIAVVHQGKI 589 (1283)
Q Consensus 527 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i 589 (1283)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||++++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999999864 7899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=372.42 Aligned_cols=214 Identities=29% Similarity=0.476 Sum_probs=181.5
Q ss_pred cEEEEEEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHH---H
Q 000789 374 EIELRDVYFRYPARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW---I 449 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~ 449 (1283)
.++++||+|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997422 146999999999999999999999999999999999999999999999999998877543 3
Q ss_pred h-cccEEEccCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000789 450 R-EKIGLVSQEPILFAT-SLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIA 525 (1283)
Q Consensus 450 r-~~i~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiA 525 (1283)
+ +.++|++|++.+|+. |++||+.++.. ....++..+ .+.+.++.+ |++........+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS-----RALEMLAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 679999999998876 99999987421 112222111 223445555 677667777889999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEeEecC
Q 000789 526 RAILKNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGT 594 (1283)
Q Consensus 526 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~ 594 (1283)
||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999874 3789999999999998889999999999998775
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=374.64 Aligned_cols=214 Identities=29% Similarity=0.450 Sum_probs=180.3
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCC------CCChHH
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELP------KFKLSW 1113 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~------~~~~~~ 1113 (1283)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999974 35999999999999999999999999999999999999999999999999873 123456
Q ss_pred HhcceEEEccCCCCChh-hHHHHHhcCCC--CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHH
Q 000789 1114 LRQQMGLVSQEPVLFNE-TIRTNIAYGKQ--GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQ 1186 (1283)
Q Consensus 1114 lR~~i~~V~Qdp~Lf~g-TIreNl~~g~~--~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1186 (1283)
+|++++|+||++.+|.+ |++||+.++.. ...+. +++.+.++..++.++ +.....+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPY-----------ADRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHH
Confidence 78899999999999864 99999974211 11222 233444444444433 33344589999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1187 RIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1187 RlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
|++||||++++|+||||||||++||+++...+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999999875 37899999999999865 999999999999999999988
Q ss_pred Hhc
Q 000789 1265 MKI 1267 (1283)
Q Consensus 1265 l~~ 1267 (1283)
.+.
T Consensus 229 ~~~ 231 (242)
T PRK11124 229 TQP 231 (242)
T ss_pred cCc
Confidence 653
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=378.28 Aligned_cols=226 Identities=30% Similarity=0.421 Sum_probs=185.1
Q ss_pred EEEEEEEEECCCC------CCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChH-
Q 000789 1040 IELRCVSFKYPTR------PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLS- 1112 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~------~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~- 1112 (1283)
|+++||+++|+.. .+.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 134699999999999999999999999999999999999999999999999999877654
Q ss_pred --HHhcceEEEccCCC--CC-hhhHHHHHhcCCC--CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCC
Q 000789 1113 --WLRQQMGLVSQEPV--LF-NETIRTNIAYGKQ--GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLS 1181 (1283)
Q Consensus 1113 --~lR~~i~~V~Qdp~--Lf-~gTIreNl~~g~~--~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1181 (1283)
.+|+.|+||||+|. ++ ..|++||+.+... .... ++++.++++..++.+ ......+..||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 36788999999983 44 4799999964210 0111 234445555544421 12334556899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEe
Q 000789 1182 GGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQ 1258 (1283)
Q Consensus 1182 gGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~ 1258 (1283)
||||||++||||++.+|+||||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998753 7899999999999975 999999999999999
Q ss_pred cChHHHHhccCchhHHH
Q 000789 1259 GSHDALMKITDGAYASL 1275 (1283)
Q Consensus 1259 Gt~~eLl~~~~g~y~~L 1275 (1283)
|+++++...++..+..+
T Consensus 233 g~~~~~~~~~~~~~~~~ 249 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNL 249 (265)
T ss_pred CCHHHHcCCCCHHHHHH
Confidence 99999987423333333
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=376.18 Aligned_cols=228 Identities=25% Similarity=0.441 Sum_probs=191.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CcceEEECCccCCCC--Ch
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-----DSGHVLLDNIELPKF--KL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~--~~ 1111 (1283)
.|+++||+|+|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++.+. +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999974 3599999999999999999999999999999999999763 489999999999776 45
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC-CCC-C----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA-T----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~-s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
...|+.++|+||++.+|+.|++||+.++.. .+. . ++.+.++++.+++.+.+ .+.....+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHHHH
Confidence 677889999999999999999999987521 011 1 23455556655554332 2334566678999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999965 999999999999999999999
Q ss_pred HhccCchhHHHH
Q 000789 1265 MKITDGAYASLV 1276 (1283)
Q Consensus 1265 l~~~~g~y~~L~ 1276 (1283)
...+...+.+.+
T Consensus 236 ~~~~~~~~~~~~ 247 (253)
T PRK14261 236 FENPHEELTENY 247 (253)
T ss_pred HhCCCcHHHHHH
Confidence 865444444443
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=378.24 Aligned_cols=222 Identities=26% Similarity=0.465 Sum_probs=186.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCcceEEECCccCCC--CCh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLDNIELPK--FKL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~~ 1111 (1283)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999974 359999999999999999999999999999999999987 699999999999853 345
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC-CCCCH-----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGATE-----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~sd-----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
..+|++++|+||+|.+|..|++||+.++.. .+.++ +.+.++++..++.+ ++.......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence 677889999999999999999999986421 12222 22344444443322 222334556678999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999875 999999999999999999999
Q ss_pred HhccCc
Q 000789 1265 MKITDG 1270 (1283)
Q Consensus 1265 l~~~~g 1270 (1283)
...+..
T Consensus 254 ~~~~~~ 259 (271)
T PRK14238 254 FSNPSD 259 (271)
T ss_pred HcCCCC
Confidence 865433
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=381.31 Aligned_cols=219 Identities=26% Similarity=0.543 Sum_probs=185.9
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccC--CCCHHHHhc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIK--KLQLKWIRE 451 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~ 451 (1283)
.|+++||+|+|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 246999999999999999999999999999999999999999999999999984 334566788
Q ss_pred ccEEEccCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000789 452 KIGLVSQEP--ILFATSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARA 527 (1283)
Q Consensus 452 ~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARa 527 (1283)
.++|++|++ .+|+.|++||+.++... .+.++..+. +.+.++.+ |+.......+.+||||||||++||||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999998 57888999999875321 222222111 12333444 55555667788999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 528 ILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 528 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999998864 7899999999999874 999999999999999999998764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=372.91 Aligned_cols=218 Identities=25% Similarity=0.407 Sum_probs=180.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHH-Hhcc
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW-LRQQ 1117 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~-lR~~ 1117 (1283)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999974 35999999999999999999999999999999999999999999999999998877654 6788
Q ss_pred eEEEccCCCCChh-hHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHcc
Q 000789 1118 MGLVSQEPVLFNE-TIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLK 1196 (1283)
Q Consensus 1118 i~~V~Qdp~Lf~g-TIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~ 1196 (1283)
++|+||++.+|.+ |++||+.++.. ..+.++..+.++ +.+..++. ++.........||||||||++||||+++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~-----~~l~~~~~-l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGF-FAERDQFQERIK-----WVYELFPR-LHERRIQRAGTMSGGEQQMLAIGRALMS 154 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhh-ccChhHHHHHHH-----HHHHHHHH-HHHHHhCchhhCCHHHHHHHHHHHHHHh
Confidence 9999999999974 99999987522 112222222111 11111111 1111223445899999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHh
Q 000789 1197 NPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1197 ~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1266 (1283)
+|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 155 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999999875 47899999999997755 99999999999999999999975
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=378.05 Aligned_cols=222 Identities=29% Similarity=0.438 Sum_probs=189.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CcceEEECCccCCC--CCh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-----DSGHVLLDNIELPK--FKL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~~~ 1111 (1283)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 5999999999973 3599999999999999999999999999999999999985 48999999999854 445
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC--CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ--GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
..+|++++||||++.+|+.|++||+.++.. ...+ ++.+.++++.+++.+++..+ ....+..||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK-------LNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHHH
Confidence 678889999999999999999999976421 1112 23455677777776544322 2345568999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEe-----CCEEEEec
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVK-----NGVIAEQG 1259 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~-----~G~Ive~G 1259 (1283)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999998777999999999999876 99999997 59999999
Q ss_pred ChHHHHhccCc
Q 000789 1260 SHDALMKITDG 1270 (1283)
Q Consensus 1260 t~~eLl~~~~g 1270 (1283)
+++++.+.+..
T Consensus 237 ~~~~~~~~~~~ 247 (259)
T PRK14260 237 VTTQIFSNPLD 247 (259)
T ss_pred CHHHHhcCCCC
Confidence 99999865333
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=391.38 Aligned_cols=213 Identities=31% Similarity=0.495 Sum_probs=177.5
Q ss_pred CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCc----ccCCCCHHHH---h-cccEEEccCCC
Q 000789 390 VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGI----DIKKLQLKWI---R-EKIGLVSQEPI 461 (1283)
Q Consensus 390 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~----~~~~~~~~~~---r-~~i~~v~Q~~~ 461 (1283)
..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||. ++...+...+ | ++|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45899999999999999999999999999999999999999999999996 6666665443 3 58999999999
Q ss_pred CCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEe
Q 000789 462 LFA-TSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLD 538 (1283)
Q Consensus 462 l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlD 538 (1283)
+|+ .|++||+.++... .+.++.. ..+.+.++.+ |++........+||||||||++|||||+.+|+|||||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~-----~~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERR-----KRVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 997 6999999987421 1222111 1222344444 5555555666789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCCChhHHH
Q 000789 539 EATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQL 609 (1283)
Q Consensus 539 E~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 609 (1283)
||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.++...|.+.
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~~ 263 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVAD 263 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHHH
Confidence 99999999999999999998864 6899999999999854 99999999999999999999987655555543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=371.43 Aligned_cols=206 Identities=35% Similarity=0.494 Sum_probs=175.6
Q ss_pred EEEEEEEEECCCCCC-cccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1040 IELRCVSFKYPTRPD-VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~-~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
|+++|++++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 578999999974111 469999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEccCCCCCh-hhHHHHHhcCCC-CCC----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHH
Q 000789 1119 GLVSQEPVLFN-ETIRTNIAYGKQ-GGA----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~-gTIreNl~~g~~-~~~----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiAR 1192 (1283)
+||||+|.+|. .|++||+.++.. ... .++++.++++..++.++..+.| .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999887 699999976421 111 1345666777777665544433 479999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhh-cCEEEEEe--CCEEEEecCh
Q 000789 1193 AVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVK--NGVIAEQGSH 1261 (1283)
Q Consensus 1193 All~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~--~G~Ive~Gt~ 1261 (1283)
||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999874 37899999999998765 99999999 7999998865
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=380.58 Aligned_cols=226 Identities=29% Similarity=0.468 Sum_probs=187.8
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHH---HHh
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLK---WIR 450 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r 450 (1283)
.|+++||+++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 5899999999963 3699999999999999999999999999999999999999999999999998766543 356
Q ss_pred cccEEEccCCCCCcc-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000789 451 EKIGLVSQEPILFAT-SLRENIAYGKEN---ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526 (1283)
Q Consensus 451 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiAR 526 (1283)
++++|++|++.+|+. |+.||+.++... .+.++.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH-----STVMMKLEAV--GLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 789999999999986 999999874211 1221111 1122334444 5655556677899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCC
Q 000789 527 AILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPE 603 (1283)
Q Consensus 527 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~ 603 (1283)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+.
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 236 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPD 236 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCCc
Confidence 99999999999999999999999999999998753 6899999999999876 99999999999999999999986533
Q ss_pred ChhHHH
Q 000789 604 GPYTQL 609 (1283)
Q Consensus 604 ~~~~~~ 609 (1283)
..+..+
T Consensus 237 ~~~~~~ 242 (269)
T PRK11831 237 PRVRQF 242 (269)
T ss_pred HHHHHH
Confidence 333333
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=357.08 Aligned_cols=178 Identities=37% Similarity=0.659 Sum_probs=165.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++|++++|+.+ ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999753 23699999999999999999999999999999999999999999999999988766 567889999
Q ss_pred EEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 000789 1120 LVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPK 1199 (1283)
Q Consensus 1120 ~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ 1199 (1283)
|+||+|.+|+.|++||+ ..+||||||||++||||++++|+
T Consensus 79 ~~~q~~~~~~~tv~~~i----------------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL----------------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred EEccCCeeecccHHHhh----------------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999997 34799999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhhcCEEEEEeCCEEEEec
Q 000789 1200 ILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQG 1259 (1283)
Q Consensus 1200 ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~G 1259 (1283)
+|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999887789999999999999889999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=386.84 Aligned_cols=230 Identities=32% Similarity=0.506 Sum_probs=189.6
Q ss_pred cEEEEEEEEECCCCC-------CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCH
Q 000789 374 EIELRDVYFRYPARP-------EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~-------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~ 446 (1283)
-|+++|++++|+... ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhcccEEEccCCC--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCCh
Q 000789 447 K---WIREKIGLVSQEPI--LFA-TSLRENIAYGK---ENATDQEIRTAIELANAAKFIDKLPKGLDT-MAGEHGTQLSG 516 (1283)
Q Consensus 447 ~---~~r~~i~~v~Q~~~--l~~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSg 516 (1283)
. .+|++|+||+|+|. |++ .||.+|+..+. ......+. ...+.++++.+ |++. .....+.+|||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAER-----REKALAMMAKV--GLRPEHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHH-----HHHHHHHHHHC--CCChHHhcCCCccCCH
Confidence 3 46788999999983 555 38999886421 11122211 11223444544 4532 34566789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEec
Q 000789 517 GQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKG 593 (1283)
Q Consensus 517 GqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 593 (1283)
|||||++|||||+.+|++||+||||++||+.+...+.+.|.++.+ +.|+|+|||+++.+.. ||+|++|++|+|+|.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999998854 7899999999999976 9999999999999999
Q ss_pred ChhHHhcCCCChhHHHH
Q 000789 594 THDELIKDPEGPYTQLV 610 (1283)
Q Consensus 594 ~~~~l~~~~~~~~~~~~ 610 (1283)
+.+++++++...|.+..
T Consensus 238 ~~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 238 TKEQIFNNPRHPYTQAL 254 (327)
T ss_pred CHHHHhcCCCCHHHHHH
Confidence 99999987666776643
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=390.31 Aligned_cols=209 Identities=29% Similarity=0.441 Sum_probs=178.2
Q ss_pred cccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCc----cCCCCChHHHh----cceEEEccCCC
Q 000789 1055 VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI----ELPKFKLSWLR----QQMGLVSQEPV 1126 (1283)
Q Consensus 1055 ~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~----di~~~~~~~lR----~~i~~V~Qdp~ 1126 (1283)
..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. ++.+.+...+| ++|+||||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35899999999999999999999999999999999999999999999996 67777655543 58999999999
Q ss_pred CCh-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 000789 1127 LFN-ETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKI 1200 (1283)
Q Consensus 1127 Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~I 1200 (1283)
+|+ .|++||+.++.. ...+ .+.+.++++.+++.++....| .+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 799999987521 1122 234566777777766544333 47999999999999999999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhccCchhHH
Q 000789 1201 LLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITDGAYAS 1274 (1283)
Q Consensus 1201 LiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1274 (1283)
||||||||+||+.+...+++.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++|++.++.+.|.+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence 999999999999999999999998754 7899999999999755 9999999999999999999998765555543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=380.59 Aligned_cols=218 Identities=30% Similarity=0.504 Sum_probs=182.7
Q ss_pred EEEEEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCC----ChHH
Q 000789 1040 IELRCVSFKYPTRP--DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF----KLSW 1113 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~----~~~~ 1113 (1283)
|+++||+++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997431 13699999999999999999999999999999999999999999999999998764 3467
Q ss_pred HhcceEEEccCC--CCChhhHHHHHhcCCC-CCCCHHHH----HHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHH
Q 000789 1114 LRQQMGLVSQEP--VLFNETIRTNIAYGKQ-GGATEEEI----IAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQ 1186 (1283)
Q Consensus 1114 lR~~i~~V~Qdp--~Lf~gTIreNl~~g~~-~~~sd~ei----~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1186 (1283)
+|+.|+|+||+| .+|+.|++||+.++.. ...+.++. .++++..++.+ ........+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 889999999998 6888999999986421 12333333 33334433321 1223445689999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1187 RIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1187 RlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
|++|||||+++|++|||||||++||+++.+.+.+.|+++. .++|+|+|||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999875 37899999999999865 999999999999999999998
Q ss_pred Hhc
Q 000789 1265 MKI 1267 (1283)
Q Consensus 1265 l~~ 1267 (1283)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 763
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=367.73 Aligned_cols=199 Identities=30% Similarity=0.521 Sum_probs=169.2
Q ss_pred EEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccEE
Q 000789 376 ELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGL 455 (1283)
Q Consensus 376 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 455 (1283)
+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999641 469999999999999999999999999999999999999999999999998754 456778999
Q ss_pred EccCC--CCCcccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 456 VSQEP--ILFATSLRENIAYGKENAT--DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 456 v~Q~~--~l~~~ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
++|++ .+++.|++||+.++.+... .+++.++++.. |++.........||||||||++|||||+.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDL-----------DLYALKERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHc-----------CCchhcCCCchhCCHHHHHHHHHHHHHHhC
Confidence 99998 4678899999998643222 23344444444 444444455568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEe
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIV 590 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~ 590 (1283)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999874 56899999999999875 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=376.87 Aligned_cols=221 Identities=29% Similarity=0.488 Sum_probs=185.0
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC--C---CCceEEECCcccCC--CCH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD--P---DAGEVLIDGIDIKK--LQL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~--~~~ 446 (1283)
.|+++||+|.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999963 359999999999999999999999999999999999997 3 59999999999864 345
Q ss_pred HHHhcccEEEccCCCCCcccHHHHHhcCCCCC---CHHH----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 000789 447 KWIREKIGLVSQEPILFATSLRENIAYGKENA---TDQE----IRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~~~----~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 519 (1283)
..+|+.++|++|++.+|+.|++||+.++.... .+++ +.++++..++.++ +.+.....+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDE-------VKDRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhhhhhCCcccCCHHHH
Confidence 56788999999999999999999998753211 1222 2222333322221 12345667789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
||++|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999865 999999999999999999998
Q ss_pred hcCCCC
Q 000789 599 IKDPEG 604 (1283)
Q Consensus 599 ~~~~~~ 604 (1283)
..++..
T Consensus 242 ~~~~~~ 247 (259)
T PRK14274 242 FSNPDD 247 (259)
T ss_pred hhCCCC
Confidence 765433
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=379.17 Aligned_cols=220 Identities=32% Similarity=0.484 Sum_probs=184.7
Q ss_pred EEEEEEEEECCCC------CCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHH-
Q 000789 375 IELRDVYFRYPAR------PEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLK- 447 (1283)
Q Consensus 375 i~~~~v~f~y~~~------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~- 447 (1283)
|+++||+|.|++. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 134699999999999999999999999999999999999999999999999999877654
Q ss_pred --HHhcccEEEccCCC--CCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHH
Q 000789 448 --WIREKIGLVSQEPI--LFA-TSLRENIAYGKE---NATDQEIRTAIELANAAKFIDKLPKGLD-TMAGEHGTQLSGGQ 518 (1283)
Q Consensus 448 --~~r~~i~~v~Q~~~--l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq 518 (1283)
.+|+.|+|++|++. ++. .|++||+.++.. ....++ ....+.+.++.+ |++ ......+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESE-----QKARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 35778999999983 443 699999975421 111111 111233455555 665 45677788999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecCh
Q 000789 519 KQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTH 595 (1283)
Q Consensus 519 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~ 595 (1283)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999998764 7899999999999975 999999999999999999
Q ss_pred hHHhcC
Q 000789 596 DELIKD 601 (1283)
Q Consensus 596 ~~l~~~ 601 (1283)
+++...
T Consensus 236 ~~~~~~ 241 (265)
T TIGR02769 236 AQLLSF 241 (265)
T ss_pred HHHcCC
Confidence 999864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=377.34 Aligned_cols=223 Identities=31% Similarity=0.513 Sum_probs=185.5
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccCCC--CH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIKKL--QL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 446 (1283)
.|+++|+++.|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 3599999999999999999999999999999999999985 799999999988643 23
Q ss_pred HHHhcccEEEccCCCCCcccHHHHHhcCCC--CCCHHH----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000789 447 KWIREKIGLVSQEPILFATSLRENIAYGKE--NATDQE----IRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQ 520 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkq 520 (1283)
..+++.++|++|++.+|+.|++||+.++.. ..+.++ +.++++.+++.+ ...........+|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD-------ETSDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc-------chhhhhcCChhhCCHHHHH
Confidence 456788999999999999999999987532 122222 222333222211 1123455677899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHh
Q 000789 521 RIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELI 599 (1283)
Q Consensus 521 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 599 (1283)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999998777999999999999865 9999999999999999999997
Q ss_pred cCCCChh
Q 000789 600 KDPEGPY 606 (1283)
Q Consensus 600 ~~~~~~~ 606 (1283)
.++...|
T Consensus 242 ~~~~~~~ 248 (258)
T PRK14268 242 HNPREKS 248 (258)
T ss_pred cCCCCHH
Confidence 6544443
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=341.34 Aligned_cols=217 Identities=31% Similarity=0.526 Sum_probs=187.3
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
+++.+++++|++ ...+++||||+++.||+++|.|||||||||++++|..++.|++|.|++||.|.... +...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 688999999975 34589999999999999999999999999999999999999999999999998765 456788999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 455 LVSQEPILFAT-SLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 455 ~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
+++-+..++.. |++|||.|...- .+..++ .+.+++..+.| +++..+..+..++|-|+||||+|||||++|
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~-----kari~~l~k~l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh~ 151 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEI-----KARIAELSKRL--QLLEYLDRRVGEFSTGMKQKVAIARALVHD 151 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHH-----HHHHHHHHHHh--ChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence 99988888865 999999985321 112221 22333444555 666667777789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|++++||||||+||..+.+.+++.+.++.. ++++|+.||.++.++. ||+|+++++|+++..|+.+++.++
T Consensus 152 P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 152 PSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred CCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999999999999875 8999999999999985 999999999999999999988654
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=370.04 Aligned_cols=211 Identities=28% Similarity=0.535 Sum_probs=178.2
Q ss_pred EEEEEEEEECCCCCC-CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 375 IELRDVYFRYPARPE-VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
|+++||+++|++... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974311 269999999999999999999999999999999999999999999999999875 345678899
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhc
Q 000789 454 GLVSQEPILFAT-SLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILK 530 (1283)
Q Consensus 454 ~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~ 530 (1283)
+|++|++.+|.. |++||+.+... ....++..+ .+.+.++.+ |++......+.+||||||||++||||++.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 999999999985 99999986422 112222111 223445555 66666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEec
Q 000789 531 NPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKG 593 (1283)
Q Consensus 531 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 593 (1283)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999875 47899999999999875 9999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=367.41 Aligned_cols=203 Identities=29% Similarity=0.515 Sum_probs=174.0
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++||+|.|++ .++|+|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+++.++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 578999999963 36999999999999 99999999999999999999999999999999999988766 66788999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000789 455 LVSQEPILFAT-SLRENIAYGKE--NATD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARA 527 (1283)
Q Consensus 455 ~v~Q~~~l~~~-ti~~ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARa 527 (1283)
|++|++.+|.. |++||+.+... ..+. +++.++++..++. ........+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-----------DRAKKKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-----------HHHhCchhhCCHHHHHHHHHHHH
Confidence 99999999886 99999987421 1111 2233444444433 33344557899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEec
Q 000789 528 ILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKG 593 (1283)
Q Consensus 528 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 593 (1283)
|+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999998777999999999999865 9999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=377.47 Aligned_cols=221 Identities=33% Similarity=0.509 Sum_probs=186.4
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEECCcccCC--CC
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD-----PDAGEVLIDGIDIKK--LQ 445 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~ 445 (1283)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999963 359999999999999999999999999999999999987 699999999998853 45
Q ss_pred HHHHhcccEEEccCCCCCcccHHHHHhcCCCC--CC---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000789 446 LKWIREKIGLVSQEPILFATSLRENIAYGKEN--AT---DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQ 520 (1283)
Q Consensus 446 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~---~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkq 520 (1283)
...+|++++||+|++.+|..|++||+.++... .. ++++.++++..++. .++++.......+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVW-------DECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCc-------chhhhhhCCCcccCCHHHHH
Confidence 66778899999999999988999999986431 11 12233333333322 12334556677899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeC-----------CE
Q 000789 521 RIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQ-----------GK 588 (1283)
Q Consensus 521 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~-----------G~ 588 (1283)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999998777899999999999865 999999996 67
Q ss_pred EeEecChhHHhcCCC
Q 000789 589 IVEKGTHDELIKDPE 603 (1283)
Q Consensus 589 i~~~g~~~~l~~~~~ 603 (1283)
+++.|+.+++...+.
T Consensus 242 ~~~~~~~~~~~~~~~ 256 (269)
T PRK14259 242 LVEFNETKKIFNSPK 256 (269)
T ss_pred EEEeCCHHHHHhCcC
Confidence 999999999976543
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=369.06 Aligned_cols=202 Identities=31% Similarity=0.497 Sum_probs=175.2
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChH---HHhc
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLS---WLRQ 1116 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR~ 1116 (1283)
|+++|++++|+. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999877643 4688
Q ss_pred ceEEEccCCCCCh-hhHHHHHhcCCC-----CCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHH
Q 000789 1117 QMGLVSQEPVLFN-ETIRTNIAYGKQ-----GGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAI 1190 (1283)
Q Consensus 1117 ~i~~V~Qdp~Lf~-gTIreNl~~g~~-----~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlai 1190 (1283)
.++|+||+|.+|. .|++||+.++.. ....++++.++++..++.+.....| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999885 699999976411 1112356777788877766554433 4799999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCE
Q 000789 1191 ARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGV 1254 (1283)
Q Consensus 1191 ARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~ 1254 (1283)
||||+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999874 47899999999999986 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=374.30 Aligned_cols=214 Identities=28% Similarity=0.425 Sum_probs=186.2
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999974 35999999999999999999999999999999999999999999999999998888778888999
Q ss_pred EEccCCCC-ChhhHHHHHhcCCCCC-C----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1120 LVSQEPVL-FNETIRTNIAYGKQGG-A----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qdp~L-f~gTIreNl~~g~~~~-~----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
|+||++.+ +..|++||+.++.... . .++++.++++..++.++..+ ....||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR-----------DYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHH
Confidence 99999987 6789999998752211 1 13345667777666554332 335899999999999999
Q ss_pred Hc------cCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1194 VL------KNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1194 ll------~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
|+ .+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999875 47899999999999875 999999999999999999998
Q ss_pred Hhc
Q 000789 1265 MKI 1267 (1283)
Q Consensus 1265 l~~ 1267 (1283)
.+.
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 763
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=370.70 Aligned_cols=213 Identities=27% Similarity=0.427 Sum_probs=179.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHH-Hhcce
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW-LRQQM 1118 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~-lR~~i 1118 (1283)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... +++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999974 35999999999999999999999999999999999999999999999999998877554 46789
Q ss_pred EEEccCCCCChh-hHHHHHhcCCCC-CCCHHH-HHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHc
Q 000789 1119 GLVSQEPVLFNE-TIRTNIAYGKQG-GATEEE-IIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVL 1195 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~g-TIreNl~~g~~~-~~sd~e-i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll 1195 (1283)
+|+||++.+|.. |++||+.++... ...+++ ..++++..+ +++........+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999976 999999865211 112222 222333222 1222334445689999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHH
Q 000789 1196 KNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1196 ~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
++|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999999998764 7899999999999986 9999999999999999999983
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=385.54 Aligned_cols=218 Identities=27% Similarity=0.490 Sum_probs=184.2
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcc
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREK 452 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 452 (1283)
..|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 35999999999963 46999999999999999999999999999999999999999999999999987654 356889
Q ss_pred cEEEccCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 000789 453 IGLVSQEPILFA-TSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAIL 529 (1283)
Q Consensus 453 i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~ 529 (1283)
||||||++.++. .|++||+.+... ..+..+..+. +.+.++.+ |+.........+||||||||++|||||+
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VPPLLEFA--KLENKADAKVGELSGGMKRRLTLARALV 154 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHh
Confidence 999999999886 599999986322 1222222221 12334433 4444445555789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 530 KNPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 530 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
.+|++|||||||++||+.+.+.+++.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999854 6899999999999976 999999999999999999999754
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=374.08 Aligned_cols=204 Identities=33% Similarity=0.481 Sum_probs=178.7
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. .+|+.+
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999974 35999999999999999999999999999999999999999999999998753 467899
Q ss_pred EEEccCCCCCh-hhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccC
Q 000789 1119 GLVSQEPVLFN-ETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKN 1197 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~-gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~ 1197 (1283)
+|++|++.+|. .|++||+.++.. ...++++.++++..++.++.. ....+||||||||++|||||+++
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK-GQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc-chHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999987 699999987522 223556777777777765433 33458999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChH
Q 000789 1198 PKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHD 1262 (1283)
Q Consensus 1198 p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~ 1262 (1283)
|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999998864 37899999999999865 9999999999999988764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=374.03 Aligned_cols=223 Identities=33% Similarity=0.539 Sum_probs=186.0
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccCC--CC
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIKK--LQ 445 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~ 445 (1283)
+.|+++||++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999963 3599999999999999999999999999999999999863 69999999999864 34
Q ss_pred HHHHhcccEEEccCCCCCcccHHHHHhcCCCC--C-C----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 000789 446 LKWIREKIGLVSQEPILFATSLRENIAYGKEN--A-T----DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQ 518 (1283)
Q Consensus 446 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 518 (1283)
...+|+.++|++|++.+|+.|++||+.++... . . ++++.++++.+++.+ ++.......+.+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD-------EVKDRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhHHHHhcCCCCCCHHH
Confidence 55678899999999999999999999875321 1 1 122333333333222 22234566778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhH
Q 000789 519 KQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDE 597 (1283)
Q Consensus 519 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~ 597 (1283)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998777899999999998865 99999999999999999999
Q ss_pred HhcCCCCh
Q 000789 598 LIKDPEGP 605 (1283)
Q Consensus 598 l~~~~~~~ 605 (1283)
+...+...
T Consensus 232 ~~~~~~~~ 239 (250)
T PRK14240 232 LFTNPKDK 239 (250)
T ss_pred HHhCCCCh
Confidence 87654333
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=368.23 Aligned_cols=202 Identities=37% Similarity=0.614 Sum_probs=172.7
Q ss_pred EEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEE
Q 000789 1041 ELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGL 1120 (1283)
Q Consensus 1041 ~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~ 1120 (1283)
+++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 468999999742 2469999999999999999999999999999999999999999999999999988877888999999
Q ss_pred EccCC--CCChhhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1121 VSQEP--VLFNETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1121 V~Qdp--~Lf~gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
+||++ .+++.|++||+.++.. ...+ ++++.+.++..++.+++. .....||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHH
Confidence 99998 4678899999976421 1122 233455566666554433 3345899999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-CceEEEEecCchHHhh-cCEEEEEeCCE
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMV-NRTTVVVAHRLTTIKN-ADIIAVVKNGV 1254 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~-~~TvI~IaHrl~ti~~-~D~I~vl~~G~ 1254 (1283)
|+++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999998753 7899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=375.83 Aligned_cols=222 Identities=33% Similarity=0.562 Sum_probs=187.4
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCC---------
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ--------- 445 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~--------- 445 (1283)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 578999999963 36999999999999999999999999999999999999999999999999886543
Q ss_pred ----HHHHhcccEEEccCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 000789 446 ----LKWIREKIGLVSQEPILFA-TSLRENIAYGKE---NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGG 517 (1283)
Q Consensus 446 ----~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 517 (1283)
...+++.++|++|++.+|. .|+.||+.++.. ....++.. ..+.+.++.+ |++......+.+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE-----KRAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2456789999999999886 699999987521 11222111 1233455555 6666667777899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecC
Q 000789 518 QKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGT 594 (1283)
Q Consensus 518 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~ 594 (1283)
||||++|||||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998754 6899999999999865 99999999999999999
Q ss_pred hhHHhcCCCChh
Q 000789 595 HDELIKDPEGPY 606 (1283)
Q Consensus 595 ~~~l~~~~~~~~ 606 (1283)
++++...+...|
T Consensus 231 ~~~~~~~~~~~~ 242 (252)
T TIGR03005 231 PDEIFRQPKEER 242 (252)
T ss_pred HHHHhcCCCcHH
Confidence 999976543333
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=362.62 Aligned_cols=200 Identities=35% Similarity=0.560 Sum_probs=180.7
Q ss_pred EEEEEEEEECCCCCC--CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcc
Q 000789 375 IELRDVYFRYPARPE--VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREK 452 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~--~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 452 (1283)
|+++||+++|++..+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999975311 3699999999999999999999999999999999999999999999998 6
Q ss_pred cEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000789 453 IGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNP 532 (1283)
Q Consensus 453 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~ 532 (1283)
|+|++|+|.+|+.|++||+.++.. ..+++..++++.+++.+++..+|.|+++.+++++.+||||||||++|||||+.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999743 3455677788888889999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCE
Q 000789 533 KILLLDEATSALDAESERIVQD-ALVKIM-TSRTTVVVAHRLTTIRNADLIAVVHQGK 588 (1283)
Q Consensus 533 ~illlDE~ts~lD~~~~~~i~~-~l~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~ 588 (1283)
+++||||||++||+++.+.+.+ .+.+.. +++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999988887 455553 4689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=387.21 Aligned_cols=229 Identities=26% Similarity=0.435 Sum_probs=185.4
Q ss_pred EEEEEEEEECCCCCC-CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC----CCCceEEECCcccCCCCHHHH
Q 000789 375 IELRDVYFRYPARPE-VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD----PDAGEVLIDGIDIKKLQLKWI 449 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~----~~~G~i~~~g~~~~~~~~~~~ 449 (1283)
|+++|++++|+.... ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.++|+++.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999974321 359999999999999999999999999999999999998 489999999999988877654
Q ss_pred h----cccEEEccCCC--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc---ccccCCCCCCCh
Q 000789 450 R----EKIGLVSQEPI--LFA-TSLRENIAYGK---ENATDQEIRTAIELANAAKFIDKLPKGLD---TMAGEHGTQLSG 516 (1283)
Q Consensus 450 r----~~i~~v~Q~~~--l~~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~lp~g~~---t~~~~~g~~LSg 516 (1283)
+ +.|+||+|+|. +++ -|+.+++.... .....++.. ..+.+.++.+ |++ ...+..+.+|||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~-----~~~~~~L~~~--gL~~~~~~l~~~p~~LSg 156 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRR-----QRAIDLLNQV--GIPDPASRLDVYPHQLSG 156 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChHHHHhCCchhCCH
Confidence 4 36999999985 443 26665554211 011221111 1122344444 453 345677889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEec
Q 000789 517 GQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKG 593 (1283)
Q Consensus 517 GqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 593 (1283)
|||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.|
T Consensus 157 Gq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g 236 (326)
T PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETG 236 (326)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999854 6899999999999865 9999999999999999
Q ss_pred ChhHHhcCCCChhHHHH
Q 000789 594 THDELIKDPEGPYTQLV 610 (1283)
Q Consensus 594 ~~~~l~~~~~~~~~~~~ 610 (1283)
+++++++++...|.+..
T Consensus 237 ~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 237 KAHDIFRAPRHPYTQAL 253 (326)
T ss_pred CHHHHhhCCCChHHHHH
Confidence 99999988777776543
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=346.34 Aligned_cols=220 Identities=30% Similarity=0.470 Sum_probs=192.8
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHH-Hhcc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW-IREK 452 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 452 (1283)
-++++||+..|+. .++|+||||++++||+++|+||||+||||+++.|+|+.+|.+|+|.++|+|+...+++. .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4789999999974 46999999999999999999999999999999999999999999999999999998765 5778
Q ss_pred cEEEccCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 453 IGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 453 i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
|+||||.-.+|+. ||+||+.+|.....+++ ......++..+-+| -+......++.+|||||+|-+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~----~~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKE----AQERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccc----cccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999976 99999998743222211 11111344556667 477778889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|++|+|||||.+|-|.-.+.|.+.|+++.+ +.|+++|-++...... |||.+||++|+|+.+|+.+||.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999975 4599999999998765 999999999999999999999876
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=380.55 Aligned_cols=219 Identities=27% Similarity=0.469 Sum_probs=182.4
Q ss_pred cEEEEEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCC----ChH
Q 000789 1039 AIELRCVSFKYPTRP--DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF----KLS 1112 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~----~~~ 1112 (1283)
.|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997321 13699999999999999999999999999999999999999999999999998653 245
Q ss_pred HHhcceEEEccCC--CCChhhHHHHHhcCCC-CCCCHHH----HHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1113 WLRQQMGLVSQEP--VLFNETIRTNIAYGKQ-GGATEEE----IIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1113 ~lR~~i~~V~Qdp--~Lf~gTIreNl~~g~~-~~~sd~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
.+|+.++|+||+| .+|..|++||+.++.. ...+.++ +.++++..++.. .........||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE----------DLISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhhCCcccCCHHHH
Confidence 6788999999998 5888899999986421 1223222 344444444421 122344568999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDA 1263 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~e 1263 (1283)
||++|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 47899999999999865 99999999999999999999
Q ss_pred HHhc
Q 000789 1264 LMKI 1267 (1283)
Q Consensus 1264 Ll~~ 1267 (1283)
+.+.
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 8753
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=384.65 Aligned_cols=214 Identities=28% Similarity=0.457 Sum_probs=181.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999974 3599999999999999999999999999999999999999999999999998654 35678999
Q ss_pred EEEccCCCCCh-hhHHHHHhc-CCCCCCCHHH----HHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHH
Q 000789 1119 GLVSQEPVLFN-ETIRTNIAY-GKQGGATEEE----IIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~-gTIreNl~~-g~~~~~sd~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiAR 1192 (1283)
+||||++.+|. .|++||+.+ +.....+..+ +.++++..++. +.+++.+ ..||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-------~~~~~~~----~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-------SKADVRV----ALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-------hHhcCch----hhCCHHHHHHHHHHH
Confidence 99999998884 699999974 2111233333 33344444433 2334444 479999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1193 AVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1193 All~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
||+++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999999874 47899999999999976 999999999999999999999764
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=382.20 Aligned_cols=220 Identities=30% Similarity=0.495 Sum_probs=182.2
Q ss_pred ccEEEEEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCC----C-C
Q 000789 1038 GAIELRCVSFKYPTRP--DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPK----F-K 1110 (1283)
Q Consensus 1038 g~I~~~nVsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~----~-~ 1110 (1283)
+.|+++||+++|++++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5799999999997532 1359999999999999999999999999999999999999999999999998852 2 3
Q ss_pred hHHHhcceEEEccCC--CCChhhHHHHHhcCCC-CCCCHHHH----HHHHHHhChHHHHHhCCCCcccccCCCCCCCChh
Q 000789 1111 LSWLRQQMGLVSQEP--VLFNETIRTNIAYGKQ-GGATEEEI----IAATEASNAHNFISALPHGYETNVGERGVQLSGG 1183 (1283)
Q Consensus 1111 ~~~lR~~i~~V~Qdp--~Lf~gTIreNl~~g~~-~~~sd~ei----~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1183 (1283)
...+|+.|+||||+| .+|..|++||+.++.. ...+.++. .+.++..++ |.+ .......+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~---~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PED---YVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------Chh---HhcCChhhCCHH
Confidence 567888999999998 4788899999987521 12233332 223333322 211 233445689999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecC
Q 000789 1184 QKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260 (1283)
Q Consensus 1184 QrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt 1260 (1283)
||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998753 7899999999998765 99999999999999999
Q ss_pred hHHHHhc
Q 000789 1261 HDALMKI 1267 (1283)
Q Consensus 1261 ~~eLl~~ 1267 (1283)
++++.+.
T Consensus 235 ~~~~~~~ 241 (289)
T PRK13645 235 PFEIFSN 241 (289)
T ss_pred HHHHhcC
Confidence 9988653
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=372.74 Aligned_cols=219 Identities=34% Similarity=0.572 Sum_probs=186.4
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCC--------
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ-------- 445 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-------- 445 (1283)
.++++||+++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3889999999963 35999999999999999999999999999999999999999999999999986532
Q ss_pred HHHHhcccEEEccCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000789 446 LKWIREKIGLVSQEPILFA-TSLRENIAYGKE---NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQR 521 (1283)
Q Consensus 446 ~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqr 521 (1283)
...+++.++||+|++.+|+ .|++||+.++.. ....++..+ .+.+.++.+ |++......+.+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 3456789999999999886 599999987421 112222111 123455555 67666677888999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHh
Q 000789 522 IAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELI 599 (1283)
Q Consensus 522 iaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 599 (1283)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999998764 7899999999999876 9999999999999999999987
Q ss_pred cCC
Q 000789 600 KDP 602 (1283)
Q Consensus 600 ~~~ 602 (1283)
+.+
T Consensus 233 ~~~ 235 (250)
T PRK11264 233 ADP 235 (250)
T ss_pred cCC
Confidence 653
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=377.69 Aligned_cols=214 Identities=27% Similarity=0.412 Sum_probs=187.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.+
T Consensus 7 ~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 7 RLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 6999999999974 3599999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEccCCCCC-hhhHHHHHhcCCCC---------CCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHH
Q 000789 1119 GLVSQEPVLF-NETIRTNIAYGKQG---------GATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRI 1188 (1283)
Q Consensus 1119 ~~V~Qdp~Lf-~gTIreNl~~g~~~---------~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1188 (1283)
+|+||++.+| ..|++||+.++... +..++++.++++..++.++..+ ....||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHHH
Confidence 9999999887 46999999865211 0112356677777777655332 3458999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHH
Q 000789 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1189 aiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
+||||++++|++|||||||++||+++...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999998866 9999999999999999999987
Q ss_pred h
Q 000789 1266 K 1266 (1283)
Q Consensus 1266 ~ 1266 (1283)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 5
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=378.39 Aligned_cols=214 Identities=29% Similarity=0.438 Sum_probs=182.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCC--CCChHHHhcc
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELP--KFKLSWLRQQ 1117 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~--~~~~~~lR~~ 1117 (1283)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999974 35999999999999999999999999999999999999999999999999985 3345677889
Q ss_pred eEEEccCCC--CChhhHHHHHhcCCC-CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHH
Q 000789 1118 MGLVSQEPV--LFNETIRTNIAYGKQ-GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAI 1190 (1283)
Q Consensus 1118 i~~V~Qdp~--Lf~gTIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlai 1190 (1283)
++||||+|. +|..|+.+|+.++.. ...+. +++.++++..++.++.. ....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHH
Confidence 999999985 677899999976311 11232 23455666666654432 2345899999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1191 ARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1191 ARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
||||+.+|+||||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999875 47899999999999865 999999999999999999998764
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=368.45 Aligned_cols=213 Identities=27% Similarity=0.477 Sum_probs=177.3
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999963 3699999999999999999999999999999999999999999999999988653 355678899
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 455 LVSQEPILFAT-SLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 455 ~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
|++|++.+++. |++||+.++.. ....++..+ .+.+.++.+ |++........+||||||||++||||++.+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~la~al~~~ 149 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----RIDELLDFV--GLLEAADRLVKTYSGGMRRRLEIARSLVHR 149 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999998875 99999987421 111111111 122333343 444444455678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
|++|||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999998753 6899999999999876 999999999999999987764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=374.12 Aligned_cols=225 Identities=31% Similarity=0.512 Sum_probs=192.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCcceEEECCccCCCC--Ch
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLDNIELPKF--KL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~~--~~ 1111 (1283)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3889999999973 359999999999999999999999999999999999875 3899999999998653 45
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC-CCC-C----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA-T----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~-s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
..+|++++|+||+|.+|+.|++||+.++.. .+. + ++++.++++.+++.+++..+ ....+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 678899999999999999999999986421 111 2 23456677888876665432 2344568999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
||++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999998877 899999999999999999999
Q ss_pred HhccCchhH
Q 000789 1265 MKITDGAYA 1273 (1283)
Q Consensus 1265 l~~~~g~y~ 1273 (1283)
...+.+.+.
T Consensus 233 ~~~~~~~~~ 241 (250)
T PRK14266 233 FINPKDKRT 241 (250)
T ss_pred HhCCCChHH
Confidence 866555443
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=371.72 Aligned_cols=212 Identities=35% Similarity=0.508 Sum_probs=184.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++|++++|+. .++++|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 578999999974 359999999999999999999999999999999999999999999999999987654 368899
Q ss_pred EEccCCCCChh-hHHHHHhcCCC-CCC----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1120 LVSQEPVLFNE-TIRTNIAYGKQ-GGA----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qdp~Lf~g-TIreNl~~g~~-~~~----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
|+||++.+|.+ |++||+.++.. ... .++++.++++..++.+++...| .+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 99999975411 111 2345666777777766655444 4899999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999998753 7899999999999866 999999999999999999999875
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=374.27 Aligned_cols=219 Identities=30% Similarity=0.446 Sum_probs=187.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CcceEEECCccCCCC--Ch
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-----DSGHVLLDNIELPKF--KL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~--~~ 1111 (1283)
-|+++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4899999999973 3599999999999999999999999999999999999875 799999999998653 34
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC-CCC-C----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA-T----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~-s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
..+|+.++|+||++.+|+.|++||+.++.. ... + ++++.++++.+++.+.+.. ........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 567889999999999999999999986421 111 1 2345566777766433322 23345568999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
||++||||++++|+||||||||++||+.+...+.+.|+++.++.|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999876 999999999999999999999
Q ss_pred Hhc
Q 000789 1265 MKI 1267 (1283)
Q Consensus 1265 l~~ 1267 (1283)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 764
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=377.01 Aligned_cols=220 Identities=25% Similarity=0.438 Sum_probs=187.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CcceEEECCccCCCCC-hH
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-----DSGHVLLDNIELPKFK-LS 1112 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~~-~~ 1112 (1283)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999974 3699999999999999999999999999999999999986 6999999999987653 45
Q ss_pred HHhcceEEEccCCCCChhhHHHHHhcCCC--CCCCHHHHH----HHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHH
Q 000789 1113 WLRQQMGLVSQEPVLFNETIRTNIAYGKQ--GGATEEEII----AATEASNAHNFISALPHGYETNVGERGVQLSGGQKQ 1186 (1283)
Q Consensus 1113 ~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~~~sd~ei~----~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1186 (1283)
.+|++++|+||+|.+|+.|++||+.++.. ...+++++. +.++..++.+. +++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA-------VKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhCCcccCCHHHHH
Confidence 67899999999999999999999986521 123444433 33344443322 223345566789999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHH
Q 000789 1187 RIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1187 RlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999999876 9999999999999999999998
Q ss_pred hcc
Q 000789 1266 KIT 1268 (1283)
Q Consensus 1266 ~~~ 1268 (1283)
+.+
T Consensus 251 ~~~ 253 (276)
T PRK14271 251 SSP 253 (276)
T ss_pred hCc
Confidence 753
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=377.91 Aligned_cols=220 Identities=28% Similarity=0.475 Sum_probs=183.7
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEECCcccCC--CCH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD-----PDAGEVLIDGIDIKK--LQL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 446 (1283)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999963 369999999999999999999999999999999999864 799999999999864 334
Q ss_pred HHHhcccEEEccCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 000789 447 KWIREKIGLVSQEPILFATSLRENIAYGKENA---TD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 519 (1283)
..++++++|++|++.+|+.|++||+.++.... .. +.+.++++..++.+ ++....+..+.+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD-------EVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCc-------chHHHHhcCcccCCHHHH
Confidence 56788999999999999999999998753211 11 11222332222211 112345667789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767899999999998865 999999999999999999998
Q ss_pred hcCCC
Q 000789 599 IKDPE 603 (1283)
Q Consensus 599 ~~~~~ 603 (1283)
..++.
T Consensus 251 ~~~~~ 255 (268)
T PRK14248 251 FTSPK 255 (268)
T ss_pred HhCCC
Confidence 76543
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=373.99 Aligned_cols=222 Identities=27% Similarity=0.471 Sum_probs=188.6
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CcceEEECCccCC-CCChH
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-----DSGHVLLDNIELP-KFKLS 1112 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~-~~~~~ 1112 (1283)
.|+++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4899999999974 3599999999999999999999999999999999999986 5999999999985 45566
Q ss_pred HHhcceEEEccCCCCChhhHHHHHhcCCC-CCC-C----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHH
Q 000789 1113 WLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA-T----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQ 1186 (1283)
Q Consensus 1113 ~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~-s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1186 (1283)
.+|+.++|+||++.+|..|++||+.++.. ... + ++++.++++.+++.+.+. .........|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 78899999999999999999999986521 111 1 233455666666654332 2234445689999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHH
Q 000789 1187 RIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1187 RlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
|++||||++.+|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777899999999999877 9999999999999999999987
Q ss_pred hccCc
Q 000789 1266 KITDG 1270 (1283)
Q Consensus 1266 ~~~~g 1270 (1283)
..+..
T Consensus 233 ~~~~~ 237 (249)
T PRK14253 233 SNPKD 237 (249)
T ss_pred cCCCC
Confidence 64333
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=367.59 Aligned_cols=203 Identities=31% Similarity=0.497 Sum_probs=174.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCCh---HHHhc
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKL---SWLRQ 1116 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~---~~lR~ 1116 (1283)
|+++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999743 359999999999999999999999999999999999999999999999999987654 34788
Q ss_pred ceEEEccCCCCCh-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHH
Q 000789 1117 QMGLVSQEPVLFN-ETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAI 1190 (1283)
Q Consensus 1117 ~i~~V~Qdp~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlai 1190 (1283)
.++||||+|.+|. .|++||+.++.. ...+ ++++.++++..++.+..... ..+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-----------PAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHH
Confidence 9999999999887 599999986421 1122 23456677777766554433 24799999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEE
Q 000789 1191 ARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVI 1255 (1283)
Q Consensus 1191 ARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~I 1255 (1283)
|||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 47899999999999986 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=371.63 Aligned_cols=218 Identities=26% Similarity=0.406 Sum_probs=182.6
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHH-Hhcc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW-IREK 452 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 452 (1283)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999963 36999999999999999999999999999999999999999999999999998877543 6778
Q ss_pred cEEEccCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 453 IGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 453 i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
++|++|++.+|+. |++||+.++......++..+. +.+.++.++ +++.........||||||||++|||||+.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER-----IKWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHH-----HHHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 999999986432222222211 112222221 122233456678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhc
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 600 (1283)
|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999999875 47899999999998765 99999999999999999999864
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=377.59 Aligned_cols=220 Identities=32% Similarity=0.510 Sum_probs=186.5
Q ss_pred cccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccCC--C
Q 000789 372 EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIKK--L 444 (1283)
Q Consensus 372 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~ 444 (1283)
.+.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999963 3599999999999999999999999999999999999984 89999999999864 3
Q ss_pred CHHHHhcccEEEccCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 000789 445 QLKWIREKIGLVSQEPILFATSLRENIAYGKEN--A-TD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGG 517 (1283)
Q Consensus 445 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 517 (1283)
+...+|+.++|++|++.+|+.|++||+.++... . .. +++.++++..++.+++ .+..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-------KDRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-------HHHhhCCcccCCHH
Confidence 455678899999999999989999999875321 1 11 2233344433332221 23456778899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChh
Q 000789 518 QKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHD 596 (1283)
Q Consensus 518 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~ 596 (1283)
||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|+|++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999998777899999999999865 9999999999999999999
Q ss_pred HHhcC
Q 000789 597 ELIKD 601 (1283)
Q Consensus 597 ~l~~~ 601 (1283)
++...
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 98765
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=377.99 Aligned_cols=220 Identities=29% Similarity=0.492 Sum_probs=187.1
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCcceEEECCccCCC--CC
Q 000789 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLDNIELPK--FK 1110 (1283)
Q Consensus 1038 g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~ 1110 (1283)
..|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35999999999974 359999999999999999999999999999999999997 689999999999864 34
Q ss_pred hHHHhcceEEEccCCCCChhhHHHHHhcCCC-CCC---CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHH
Q 000789 1111 LSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA---TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQ 1186 (1283)
Q Consensus 1111 ~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~---sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1186 (1283)
...+|++++||||++.+|..|++||+.++.. ... .++++.++++..++...+.. .......+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHH
Confidence 5677899999999999998999999986411 011 23456677777666433321 233455689999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEE-EEeCCEEEEecChHHH
Q 000789 1187 RIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIA-VVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1187 RlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~-vl~~G~Ive~Gt~~eL 1264 (1283)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999876 99975 5699999999999999
Q ss_pred Hhc
Q 000789 1265 MKI 1267 (1283)
Q Consensus 1265 l~~ 1267 (1283)
.++
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 764
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=384.56 Aligned_cols=229 Identities=24% Similarity=0.379 Sum_probs=187.8
Q ss_pred cEEEEEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCC---cceEEECCccCCCCChHHH
Q 000789 1039 AIELRCVSFKYPTRP-DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD---SGHVLLDNIELPKFKLSWL 1114 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~---~G~I~idG~di~~~~~~~l 1114 (1283)
-|+++|++++|+.+. ...+++||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.|+.+++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996421 246999999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----cceEEEccCC--CCCh-hhHHHHHhcCC--CCCCCHHH----HHHHHHHhChHHHHHhCCCCcccccCCCCCCCC
Q 000789 1115 R----QQMGLVSQEP--VLFN-ETIRTNIAYGK--QGGATEEE----IIAATEASNAHNFISALPHGYETNVGERGVQLS 1181 (1283)
Q Consensus 1115 R----~~i~~V~Qdp--~Lf~-gTIreNl~~g~--~~~~sd~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1181 (1283)
| ++|+||||+| .++. .|+.+|+.... ....+.++ +.+.++.+++ |++. ..++....+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccCC
Confidence 4 4799999999 3443 57777764210 11233332 3344444433 3322 22456677899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEe
Q 000789 1182 GGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQ 1258 (1283)
Q Consensus 1182 gGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~ 1258 (1283)
||||||++|||||+.+|++||+|||||+||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||.+|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998754 7899999999999975 999999999999999
Q ss_pred cChHHHHhccCchhHHH
Q 000789 1259 GSHDALMKITDGAYASL 1275 (1283)
Q Consensus 1259 Gt~~eLl~~~~g~y~~L 1275 (1283)
|+++++.+.+...|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 99999998766667663
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=379.08 Aligned_cols=221 Identities=30% Similarity=0.542 Sum_probs=186.2
Q ss_pred cEEEEEEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCC----CHH
Q 000789 374 EIELRDVYFRYPARP--EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL----QLK 447 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~ 447 (1283)
.|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997321 13699999999999999999999999999999999999999999999999998643 245
Q ss_pred HHhcccEEEccCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHH
Q 000789 448 WIREKIGLVSQEP--ILFATSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLD-TMAGEHGTQLSGGQKQRI 522 (1283)
Q Consensus 448 ~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqkqri 522 (1283)
..++.|+|++|+| .+|..|++|||.++.. ....++..+ .+.++++.+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6678899999998 5777899999987532 122222221 123455555 775 355777889999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhc
Q 000789 523 AIARAILKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600 (1283)
Q Consensus 523 aiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 600 (1283)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999885 46899999999999865 99999999999999999998865
Q ss_pred C
Q 000789 601 D 601 (1283)
Q Consensus 601 ~ 601 (1283)
.
T Consensus 235 ~ 235 (287)
T PRK13641 235 D 235 (287)
T ss_pred C
Confidence 3
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=377.27 Aligned_cols=218 Identities=31% Similarity=0.546 Sum_probs=184.6
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
++++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 35999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEccCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhc
Q 000789 455 LVSQEP--ILFATSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILK 530 (1283)
Q Consensus 455 ~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~ 530 (1283)
||+|++ .+|+.|+.||+.++.. ..+.++..+ .+.+.++.+ |+.......+..||||||||++|||||+.
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH-----RVSSALHML--GLEELRDRVPHHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 999998 3778899999987532 122222111 112333333 44444455567999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEeEecChhHHhcC
Q 000789 531 NPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIR-NADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 531 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|++++++..
T Consensus 155 ~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999998754 689999999999986 5999999999999999999999764
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=368.22 Aligned_cols=199 Identities=26% Similarity=0.445 Sum_probs=170.2
Q ss_pred EEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEE
Q 000789 1041 ELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGL 1120 (1283)
Q Consensus 1041 ~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~ 1120 (1283)
+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999974 35999999999999999999999999999999999999999999999998764 46889999
Q ss_pred EccCCCC---ChhhHHHHHhcCCCCC---------CCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHH
Q 000789 1121 VSQEPVL---FNETIRTNIAYGKQGG---------ATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRI 1188 (1283)
Q Consensus 1121 V~Qdp~L---f~gTIreNl~~g~~~~---------~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1188 (1283)
|||+|.+ |+.|++||+.++.... ..++++.++++..++.++... ...+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHH
Confidence 9999976 5689999998652210 123456677777777655443 2347999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEec
Q 000789 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259 (1283)
Q Consensus 1189 aiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1259 (1283)
+|||||+++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999875 57899999999999876 9999999986 56654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=372.31 Aligned_cols=217 Identities=32% Similarity=0.563 Sum_probs=186.4
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCC--CHHHHhcc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL--QLKWIREK 452 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~--~~~~~r~~ 452 (1283)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 3699999999999999999999999999999999999999999999999998764 33567889
Q ss_pred cEEEccCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 000789 453 IGLVSQEPILFA-TSLRENIAYGKE---NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAI 528 (1283)
Q Consensus 453 i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal 528 (1283)
++|++|++.++. .|++||+.++.. ..+..+..+ .+.+.++.+ |++.........||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999998886 599999987531 112222111 223455555 777667777889999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 529 LKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 529 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
+.+|+++||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999999875 47899999999999865 999999999999999999998764
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=376.75 Aligned_cols=220 Identities=33% Similarity=0.610 Sum_probs=187.0
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++|++++|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 34699999999999999999999999999999999999999999999999999877777888999
Q ss_pred EEEccCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 000789 454 GLVSQEP--ILFATSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAIL 529 (1283)
Q Consensus 454 ~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~ 529 (1283)
+||+|++ .++..|++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 35567999999885321 22222211 122344444 5555566667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcC
Q 000789 530 KNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 530 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999998754 4899999999999888999999999999999999888654
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=375.33 Aligned_cols=230 Identities=27% Similarity=0.423 Sum_probs=190.1
Q ss_pred cEEEEEEEEECCCC------CCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChH
Q 000789 1039 AIELRCVSFKYPTR------PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLS 1112 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~------~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~ 1112 (1283)
-|+++||+++|+.. ...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124699999999999999999999999999999999999999999999999998765556
Q ss_pred HHhcceEEEccCCC--CCh-hhHHHHHhcCC--CCCCC----HHHHHHHHHHhChH-HHHHhCCCCcccccCCCCCCCCh
Q 000789 1113 WLRQQMGLVSQEPV--LFN-ETIRTNIAYGK--QGGAT----EEEIIAATEASNAH-NFISALPHGYETNVGERGVQLSG 1182 (1283)
Q Consensus 1113 ~lR~~i~~V~Qdp~--Lf~-gTIreNl~~g~--~~~~s----d~ei~~al~~a~l~-~~I~~lp~Gldt~vge~G~~LSg 1182 (1283)
..|+.++||||+|. ++. .|+.+|+.+.. ..... ++++.++++.+++. +... . ...+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-------Y----YPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-------c----CchhcCH
Confidence 66778999999985 443 48899986421 10111 34566777777773 3322 2 2347999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEec
Q 000789 1183 GQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259 (1283)
Q Consensus 1183 GQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1259 (1283)
|||||++||||++++|+||||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998753 7899999999999987 9999999999999999
Q ss_pred ChHHHHhcc-CchhHHHHHHh
Q 000789 1260 SHDALMKIT-DGAYASLVALH 1279 (1283)
Q Consensus 1260 t~~eLl~~~-~g~y~~L~~~~ 1279 (1283)
+++++.+.+ ...+++++...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 999998753 34566777654
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=378.93 Aligned_cols=220 Identities=32% Similarity=0.556 Sum_probs=185.8
Q ss_pred EEEEEEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCC----CHHH
Q 000789 375 IELRDVYFRYPARP--EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL----QLKW 448 (1283)
Q Consensus 375 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~ 448 (1283)
|+++||+++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997422 13699999999999999999999999999999999999999999999999998753 3456
Q ss_pred HhcccEEEccCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 000789 449 IREKIGLVSQEP--ILFATSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLD-TMAGEHGTQLSGGQKQRIA 523 (1283)
Q Consensus 449 ~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqkqria 523 (1283)
+|+.|+|++|++ .+|+.|++||+.++.. ..+.++..+. +.+.++.+ |++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 6788899999987532 1223332221 23344444 665 3456777899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 524 IARAILKNPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 524 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999998754 6899999999999865 999999999999999999998754
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=375.76 Aligned_cols=219 Identities=30% Similarity=0.463 Sum_probs=185.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CcceEEECCccCCC--CCh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-----DSGHVLLDNIELPK--FKL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~~~ 1111 (1283)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999974 3599999999999999999999999999999999999974 69999999999853 445
Q ss_pred HHHhcceEEEccCCCCCh-hhHHHHHhcCCC--CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhH
Q 000789 1112 SWLRQQMGLVSQEPVLFN-ETIRTNIAYGKQ--GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQ 1184 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~-gTIreNl~~g~~--~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1184 (1283)
..+|+.++|++|++.+|. .|++||+.++.. ...+ ++.+.++++..++.+.+. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 678899999999999887 599999975411 1111 234555666666643322 22334456899999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEe------CCEEEE
Q 000789 1185 KQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVK------NGVIAE 1257 (1283)
Q Consensus 1185 rQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~------~G~Ive 1257 (1283)
|||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 99999999999999999999999999999999999999988767899999999999865 99999997 899999
Q ss_pred ecChHHHHhc
Q 000789 1258 QGSHDALMKI 1267 (1283)
Q Consensus 1258 ~Gt~~eLl~~ 1267 (1283)
.|++++++..
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999999764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=369.60 Aligned_cols=212 Identities=35% Similarity=0.521 Sum_probs=183.1
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++|++++|+. .++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999974 359999999999999999999999999999999999999999999999999876553 478899
Q ss_pred EEccCCCCChh-hHHHHHhcCCCC-CCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1120 LVSQEPVLFNE-TIRTNIAYGKQG-GAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qdp~Lf~g-TIreNl~~g~~~-~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
|+||+|.+|.+ |++||+.++... ..+ ++++.++++..++.++..+. ..+|||||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999975 999999865210 111 33455666666665544332 35899999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
++++|+++||||||++||++++..+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998754 6899999999999866 999999999999999999999764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=379.32 Aligned_cols=217 Identities=31% Similarity=0.521 Sum_probs=184.6
Q ss_pred cEEEEEEEEECCCCC---CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCC-HHHH
Q 000789 374 EIELRDVYFRYPARP---EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ-LKWI 449 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~---~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-~~~~ 449 (1283)
-|+++|++++|++.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999987643 3556
Q ss_pred hcccEEEccCCC--CCcccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000789 450 REKIGLVSQEPI--LFATSLRENIAYGKEN--ATD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQR 521 (1283)
Q Consensus 450 r~~i~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqr 521 (1283)
++.+|||+|+|. ++..|+.+|+.|+... .+. +++.++++.. |++........+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKV-----------GMYEYRRHAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHC-----------CCHhHhhCCcccCCHHHHHH
Confidence 889999999984 6767999999986321 122 2233334433 44444555567999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHh
Q 000789 522 IAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELI 599 (1283)
Q Consensus 522 iaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~ 599 (1283)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999998853 78999999999999889999999999999999999987
Q ss_pred cC
Q 000789 600 KD 601 (1283)
Q Consensus 600 ~~ 601 (1283)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=375.33 Aligned_cols=224 Identities=32% Similarity=0.513 Sum_probs=185.1
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEECCcccCC--CCH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD-----PDAGEVLIDGIDIKK--LQL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 446 (1283)
.|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 369999999999999999999999999999999999997 489999999998854 344
Q ss_pred HHHhcccEEEccCCCCCcccHHHHHhcCCCC--C-CHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 000789 447 KWIREKIGLVSQEPILFATSLRENIAYGKEN--A-TDQ----EIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 519 (1283)
..+++.++|++|++.+|+.|++||+.++... . ..+ ++.++++..++++ .........+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK-------ETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc-------chHHHhccChhhCCHHHH
Confidence 5678889999999999999999999875321 1 111 2222333222211 011234567789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999876 999999999999999999998
Q ss_pred hcCCCChhH
Q 000789 599 IKDPEGPYT 607 (1283)
Q Consensus 599 ~~~~~~~~~ 607 (1283)
...+...|.
T Consensus 234 ~~~~~~~~~ 242 (251)
T PRK14251 234 FIAPKKQIT 242 (251)
T ss_pred HhCCCCHHH
Confidence 765443343
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=379.12 Aligned_cols=226 Identities=28% Similarity=0.449 Sum_probs=188.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCcceEEECCccCCCC--Ch
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLDNIELPKF--KL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~~--~~ 1111 (1283)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +.
T Consensus 39 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 5899999999974 359999999999999999999999999999999999865 4999999999988643 33
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC-CCC-C----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA-T----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~-s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
..+|++++||||+|.+|+.|++||+.++.. ... + ++++.++++..++.+.+. .........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHHHH
Confidence 457889999999999998999999987521 111 1 234556666666543221 122344568999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
||++|||||+.+|++|||||||++||+++...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999876 999999999999999999999
Q ss_pred HhccCchhHH
Q 000789 1265 MKITDGAYAS 1274 (1283)
Q Consensus 1265 l~~~~g~y~~ 1274 (1283)
.+++...|.+
T Consensus 269 ~~~~~~~~~~ 278 (286)
T PRK14275 269 FTNPKDRMTE 278 (286)
T ss_pred HhCCCcHHHH
Confidence 8754444433
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=375.84 Aligned_cols=218 Identities=33% Similarity=0.570 Sum_probs=185.7
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCC-HHHHhccc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ-LKWIREKI 453 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-~~~~r~~i 453 (1283)
|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999963 235999999999999999999999999999999999999999999999999997765 35678899
Q ss_pred EEEccCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 000789 454 GLVSQEPI--LFATSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAIL 529 (1283)
Q Consensus 454 ~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~ 529 (1283)
+||+|+|. +++.|++|||.++... .+.++..+. +.+.++.+ |++......+..||||||||++|||||+
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR-----VDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 5678999999886421 222222211 22334444 6665666677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcC
Q 000789 530 KNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 530 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
.+|+||||||||++||+.+...+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999875 47899999999999988999999999999999999988654
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=363.96 Aligned_cols=202 Identities=32% Similarity=0.510 Sum_probs=176.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++|++++|++. . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5799999999742 2 39999999999999999999999999999999999999999999999976653 467899
Q ss_pred EEccCCCCChh-hHHHHHhcCCCCC-----CCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1120 LVSQEPVLFNE-TIRTNIAYGKQGG-----ATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qdp~Lf~g-TIreNl~~g~~~~-----~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
|+||++.+|.+ |++||+.++.... ..++++.++++..++.+.....| .+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 9999998653211 13456778888888876665544 3799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhh-cCEEEEEeCCEEEEec
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1259 (1283)
++++|++|||||||++||+++...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999875 37899999999999976 9999999999998765
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=373.27 Aligned_cols=224 Identities=27% Similarity=0.470 Sum_probs=185.8
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC--C---CCceEEECCcccCCC--C
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD--P---DAGEVLIDGIDIKKL--Q 445 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~~--~ 445 (1283)
+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999963 369999999999999999999999999999999999986 4 689999999998643 3
Q ss_pred HHHHhcccEEEccCCCCCc-ccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 000789 446 LKWIREKIGLVSQEPILFA-TSLRENIAYGKEN---ATD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGG 517 (1283)
Q Consensus 446 ~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 517 (1283)
...+|+.++|++|++.+|. .|++||+.++... .+. +++.++++..++.+++ ....+..+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-------KDRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcCcCCHH
Confidence 4567889999999999998 5999999875311 111 1223333333332221 12345567899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChh
Q 000789 518 QKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHD 596 (1283)
Q Consensus 518 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~ 596 (1283)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|+|++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999999865 9999999999999999999
Q ss_pred HHhcCCCChh
Q 000789 597 ELIKDPEGPY 606 (1283)
Q Consensus 597 ~l~~~~~~~~ 606 (1283)
++...+...|
T Consensus 233 ~~~~~~~~~~ 242 (252)
T PRK14256 233 KIFTTPEKKQ 242 (252)
T ss_pred HHHhCCCcHH
Confidence 9976644433
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=371.11 Aligned_cols=221 Identities=27% Similarity=0.460 Sum_probs=188.4
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHH-Hhccc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW-IREKI 453 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 453 (1283)
|+++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 36999999999999999999999999999999999999999999999999988776554 35679
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCCCH--HH---HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000789 454 GLVSQEPILFAT-SLRENIAYGKENATD--QE---IRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARA 527 (1283)
Q Consensus 454 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~--~~---~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARa 527 (1283)
+|++|++.+|++ |++||+.++...... .. .........++++++.+ |++........+||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999986 999999986321000 00 00011112344566666 77777778888999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhc
Q 000789 528 ILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600 (1283)
Q Consensus 528 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 600 (1283)
++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999998778999999999999976 99999999999999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=374.77 Aligned_cols=222 Identities=33% Similarity=0.509 Sum_probs=183.7
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcC---CCC--CCceEEECCcccCCC--CH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERF---YDP--DAGEVLIDGIDIKKL--QL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~---~~~--~~G~i~~~g~~~~~~--~~ 446 (1283)
.|+++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.+||+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5899999999963 3599999999999999999999999999999999997 454 589999999998654 34
Q ss_pred HHHhcccEEEccCCCCCcccHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHHhC--CCCccccccCCCCCCChHHHHH
Q 000789 447 KWIREKIGLVSQEPILFATSLRENIAYGKEN--A-TDQEIRTAIELANAAKFIDKL--PKGLDTMAGEHGTQLSGGQKQR 521 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l--p~g~~t~~~~~g~~LSgGqkqr 521 (1283)
..+++.++|+||++.+|+.|++||+.++... . ..++..+. +.+.++.+ ++.+.+...+.+.+||||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQR-----VEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHH-----HHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 5678899999999999988999999875321 1 11111111 12233333 1112344567788999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhc
Q 000789 522 IAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600 (1283)
Q Consensus 522 iaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 600 (1283)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999999998778999999999999865 99999999999999999999986
Q ss_pred CCC
Q 000789 601 DPE 603 (1283)
Q Consensus 601 ~~~ 603 (1283)
++.
T Consensus 235 ~~~ 237 (250)
T PRK14245 235 NPE 237 (250)
T ss_pred CCC
Confidence 533
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=364.28 Aligned_cols=203 Identities=28% Similarity=0.495 Sum_probs=174.5
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++||+++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ..++++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999988654 45677899
Q ss_pred EEccCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 455 LVSQEPILFA-TSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 455 ~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
||+|++.+|. .|++||+.++.. ..+++++.++++..++.+ .....+..||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKD-----------SAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-----------HHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 699999987532 123444555555554443 34455678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEec
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKG 593 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 593 (1283)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999876 47899999999999875 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=385.79 Aligned_cols=231 Identities=24% Similarity=0.419 Sum_probs=188.6
Q ss_pred cEEEEEEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CceEEECCcccCCCCHHHH
Q 000789 374 EIELRDVYFRYPARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD---AGEVLIDGIDIKKLQLKWI 449 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~~~~~~~~~~~ 449 (1283)
-++++|++++|+... ..++++||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||+++..++...+
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996321 246999999999999999999999999999999999999996 9999999999998877655
Q ss_pred h----cccEEEccCC--CCCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHh--CCCCccccccCCCCCCChH
Q 000789 450 R----EKIGLVSQEP--ILFA-TSLRENIAYGK---ENATDQEIRTAIELANAAKFIDK--LPKGLDTMAGEHGTQLSGG 517 (1283)
Q Consensus 450 r----~~i~~v~Q~~--~l~~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~--lp~g~~t~~~~~g~~LSgG 517 (1283)
+ ++|+||+|+| .+++ .|+.+|+.... ...+.++..+. +.+.++. +|++. ..++..+.+||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~-----~~~~L~~vgL~~~~-~~~~~~p~~LSgG 165 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEE-----SVRMLDAVKMPEAR-KRMKMYPHEFSGG 165 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCCChH-HHhcCCcccCCHH
Confidence 3 4799999998 4554 37877775321 11223222211 1122222 33322 3357788999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecC
Q 000789 518 QKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGT 594 (1283)
Q Consensus 518 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~ 594 (1283)
||||++|||||+.+|++||+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.|+
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999998864 6899999999999975 99999999999999999
Q ss_pred hhHHhcCCCChhHHHH
Q 000789 595 HDELIKDPEGPYTQLV 610 (1283)
Q Consensus 595 ~~~l~~~~~~~~~~~~ 610 (1283)
++++.+++...|.+..
T Consensus 246 ~~~i~~~p~~pyt~~l 261 (330)
T PRK09473 246 ARDVFYQPSHPYSIGL 261 (330)
T ss_pred HHHHHhCCCCHHHHHH
Confidence 9999988777787643
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=374.78 Aligned_cols=213 Identities=26% Similarity=0.400 Sum_probs=185.2
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999974 36999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEccCCC-CChhhHHHHHhcCCCC-------C--CCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHH
Q 000789 1120 LVSQEPV-LFNETIRTNIAYGKQG-------G--ATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIA 1189 (1283)
Q Consensus 1120 ~V~Qdp~-Lf~gTIreNl~~g~~~-------~--~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1189 (1283)
|+||++. .+..|++||+.++... . ..++++.++++..++.+... .....||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD-----------RDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHH
Confidence 9999995 4578999999875210 0 11234566676666654432 234589999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHh
Q 000789 1190 IARAVLKNPKILLLDEATSALDAESERVVQDALERVMV-NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1190 iARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~-~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1266 (1283)
||||++.+|+++||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999999999999998753 6899999999999955 99999999999999999999865
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=364.16 Aligned_cols=210 Identities=32% Similarity=0.497 Sum_probs=187.1
Q ss_pred EEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCCh----HHHhc
Q 000789 1041 ELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKL----SWLRQ 1116 (1283)
Q Consensus 1041 ~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~----~~lR~ 1116 (1283)
.+.|+.|+|+.+ .++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999844 469999999999999999999999999999999999999999999999998876542 34567
Q ss_pred ceEEEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHcc
Q 000789 1117 QMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLK 1196 (1283)
Q Consensus 1117 ~i~~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~ 1196 (1283)
.++|++|+|.+|+.|++||+.++. ..++++..++++..++.+++..+|.|+++.++....+||||||||++||||+++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGS--PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcC--cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 899999999999999999998752 245667788889999999999999999999998889999999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHH--HHHHHc-CCceEEEEecCchHHhhcCEEEEEeCCE
Q 000789 1197 NPKILLLDEATSALDAESERVVQD--ALERVM-VNRTTVVVAHRLTTIKNADIIAVVKNGV 1254 (1283)
Q Consensus 1197 ~p~ILiLDEaTSaLD~~te~~I~~--~L~~~~-~~~TvI~IaHrl~ti~~~D~I~vl~~G~ 1254 (1283)
+|++|||||||++||+.+...+.+ .++... .+.|+|++||+++.+..||++++|++|+
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999998887 444443 3689999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=374.27 Aligned_cols=220 Identities=28% Similarity=0.471 Sum_probs=183.5
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCC--CC---CCceEEECCcccCCC--CH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFY--DP---DAGEVLIDGIDIKKL--QL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~--~~---~~G~i~~~g~~~~~~--~~ 446 (1283)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ .| ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 35999999999999999999999999999999999995 46 599999999998643 34
Q ss_pred HHHhcccEEEccCCCCCcccHHHHHhcCCC--CC-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 000789 447 KWIREKIGLVSQEPILFATSLRENIAYGKE--NA-TD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~-~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 519 (1283)
..+|+.++||+|++.+|+.|++||+.++.. .. .. +++.++++..++.+ ++.+..+..+.+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD-------EVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCch-------hHHHHHhcCcccCCHHHH
Confidence 567889999999999999999999987531 11 11 12222333333221 122445677789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767899999999998865 999999999999999999999
Q ss_pred hcCCC
Q 000789 599 IKDPE 603 (1283)
Q Consensus 599 ~~~~~ 603 (1283)
.+.+.
T Consensus 235 ~~~~~ 239 (252)
T PRK14239 235 FMNPK 239 (252)
T ss_pred HhCCC
Confidence 76543
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=376.93 Aligned_cols=213 Identities=30% Similarity=0.480 Sum_probs=183.4
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999963 3699999999999999999999999999999999999999999999999999887777888899
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCC----------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 000789 454 GLVSQEPILFAT-SLRENIAYGKENA----------TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRI 522 (1283)
Q Consensus 454 ~~v~Q~~~l~~~-ti~~ni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri 522 (1283)
+|++|++.++.. |+.||+.++.... .++++.++++..++ +........+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL-----------KPLAHRLVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCC-----------HHHhcCCcccCCHHHHHHH
Confidence 999999877665 9999999763210 11233444444444 3334445568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHh
Q 000789 523 AIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELI 599 (1283)
Q Consensus 523 aiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 599 (1283)
+|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999998753 6899999999999865 9999999999999999998876
Q ss_pred c
Q 000789 600 K 600 (1283)
Q Consensus 600 ~ 600 (1283)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 4
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=373.13 Aligned_cols=224 Identities=27% Similarity=0.420 Sum_probs=191.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CcceEEECCccCCCC--Ch
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-----DSGHVLLDNIELPKF--KL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~--~~ 1111 (1283)
.+.+++++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4899999999963 3699999999999999999999999999999999999986 799999999998643 44
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC----CCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ----GGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQR 1187 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~----~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1187 (1283)
..+|+.++|+||++.+|..|++||+.++.. .....+++.++++.+++.+.+.. ..++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 567889999999999999999999987521 01123567778888887655432 2345566899999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEe--------CCEEEEe
Q 000789 1188 IAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVK--------NGVIAEQ 1258 (1283)
Q Consensus 1188 laiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~--------~G~Ive~ 1258 (1283)
++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999998777899999999998866 99999996 8999999
Q ss_pred cChHHHHhccCchh
Q 000789 1259 GSHDALMKITDGAY 1272 (1283)
Q Consensus 1259 Gt~~eLl~~~~g~y 1272 (1283)
|+++++++.+...+
T Consensus 238 g~~~~~~~~~~~~~ 251 (261)
T PRK14263 238 GPTAQIFQNPREQL 251 (261)
T ss_pred CCHHHHHhCCCcHH
Confidence 99999987544333
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=373.95 Aligned_cols=220 Identities=28% Similarity=0.473 Sum_probs=186.9
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEECCcccCC--CCH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD-----PDAGEVLIDGIDIKK--LQL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 446 (1283)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++. |++|+|.++|+++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999963 369999999999999999999999999999999999986 489999999998853 345
Q ss_pred HHHhcccEEEccCCCCCcccHHHHHhcCCCCC--C---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000789 447 KWIREKIGLVSQEPILFATSLRENIAYGKENA--T---DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQR 521 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~--~---~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqr 521 (1283)
..++++++|++|++.+|+.|++||+.++.... . ++++.++++.+++.+++. ......+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHH
Confidence 66788999999999999889999999864211 1 123344445555443332 23456778999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEe---------CCEEeE
Q 000789 522 IAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVH---------QGKIVE 591 (1283)
Q Consensus 522 iaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~---------~G~i~~ 591 (1283)
++|||||+++|++|||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+.. ||+|++|+ +|+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998777899999999999865 99999998 899999
Q ss_pred ecChhHHhcCCC
Q 000789 592 KGTHDELIKDPE 603 (1283)
Q Consensus 592 ~g~~~~l~~~~~ 603 (1283)
.|+++|+.+.+.
T Consensus 240 ~~~~~~~~~~~~ 251 (264)
T PRK14243 240 FDRTEKIFNSPQ 251 (264)
T ss_pred eCCHHHHHhCCC
Confidence 999999986643
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=377.69 Aligned_cols=215 Identities=29% Similarity=0.478 Sum_probs=183.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCC--CChHHHhcc
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPK--FKLSWLRQQ 1117 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~--~~~~~lR~~ 1117 (1283)
|+++||+++|+. ..++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .+...+|+.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999973 2359999999999999999999999999999999999999999999999999852 234567899
Q ss_pred eEEEccCC--CCChhhHHHHHhcCCC-CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHH
Q 000789 1118 MGLVSQEP--VLFNETIRTNIAYGKQ-GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAI 1190 (1283)
Q Consensus 1118 i~~V~Qdp--~Lf~gTIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlai 1190 (1283)
|+|+||+| .+|..|++||+.++.. ...+. +++.++++..++.++.. . ....||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-------~----~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-------K----PPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-------C----ChhhCCHHHHHHHHH
Confidence 99999998 5788999999986521 11222 34556666666654322 2 234799999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1191 ARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1191 ARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
|||++++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999875 47899999999999875 999999999999999999998763
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=375.46 Aligned_cols=220 Identities=30% Similarity=0.485 Sum_probs=186.4
Q ss_pred cccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEECCcccCC--C
Q 000789 372 EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD-----PDAGEVLIDGIDIKK--L 444 (1283)
Q Consensus 372 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~ 444 (1283)
...|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.+||+++.. .
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 346999999999963 469999999999999999999999999999999999997 589999999999864 3
Q ss_pred CHHHHhcccEEEccCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 000789 445 QLKWIREKIGLVSQEPILFATSLRENIAYGKEN--A-TD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGG 517 (1283)
Q Consensus 445 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 517 (1283)
+...+|+.|+||+|++.+|+.|++||+.++... . .. +++.++++..++.++ +++..+..+.+||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQ-------VKDDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCch-------hhhhhcCCcccCCHH
Confidence 455678899999999999989999999885321 1 11 222333333333222 234566778899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChh
Q 000789 518 QKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHD 596 (1283)
Q Consensus 518 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~ 596 (1283)
||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.++.|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999999865 9999999999999999999
Q ss_pred HHhcC
Q 000789 597 ELIKD 601 (1283)
Q Consensus 597 ~l~~~ 601 (1283)
++...
T Consensus 248 ~~~~~ 252 (267)
T PRK14237 248 NIFTN 252 (267)
T ss_pred HHhcC
Confidence 98765
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=372.60 Aligned_cols=218 Identities=22% Similarity=0.416 Sum_probs=183.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHH-Hhcc
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW-LRQQ 1117 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~-lR~~ 1117 (1283)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... +|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999974 36999999999999999999999999999999999999999999999999998777544 5789
Q ss_pred eEEEccCCCCCh-hhHHHHHhcCCC--CCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHH
Q 000789 1118 MGLVSQEPVLFN-ETIRTNIAYGKQ--GGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAV 1194 (1283)
Q Consensus 1118 i~~V~Qdp~Lf~-gTIreNl~~g~~--~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAl 1194 (1283)
++|+||++.+|. .|++||+.+... ...+.++.. ..+.++++.+ |++.........||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 999999999887 599999986421 112222211 1223344444 444444555678999999999999999
Q ss_pred ccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHh
Q 000789 1195 LKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1195 l~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1266 (1283)
+++|++|||||||++||+.+...+.+.++++. .++|+|++||+++.+.. ||++++|++|++++.|++++++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999998865 47899999999987765 99999999999999999999875
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=377.63 Aligned_cols=220 Identities=31% Similarity=0.545 Sum_probs=186.4
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC---ceEEECCcccCCCCHHHHh
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA---GEVLIDGIDIKKLQLKWIR 450 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~---G~i~~~g~~~~~~~~~~~r 450 (1283)
.|+++|++|+|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...++
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999642 2469999999999999999999999999999999999999998 8999999999877777778
Q ss_pred cccEEEccCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000789 451 EKIGLVSQEPI--LFATSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526 (1283)
Q Consensus 451 ~~i~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiAR 526 (1283)
++||||+|++. +++.|+.|||.++.+. .+.++..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~G~~qrv~lar 156 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK-----IVRDVLADV--GMLDYIDSEPANLSGGQKQRVAIAG 156 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHH
Confidence 89999999984 5678999999986332 22322211 112233333 4444555666799999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcC
Q 000789 527 AILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 527 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 157 al~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 157 ILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998753 6899999999999988999999999999999999988754
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=374.24 Aligned_cols=226 Identities=28% Similarity=0.453 Sum_probs=186.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCC-----cceEEECCccCCC--CCh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD-----SGHVLLDNIELPK--FKL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~-----~G~I~idG~di~~--~~~ 1111 (1283)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3889999999973 46999999999999999999999999999999999999874 8999999999865 344
Q ss_pred HHHhcceEEEccCCCCCh-hhHHHHHhcCCC-CCC-CHHHHHH----HHHHhChHHHHHhCCCCcccccCCCCCCCChhH
Q 000789 1112 SWLRQQMGLVSQEPVLFN-ETIRTNIAYGKQ-GGA-TEEEIIA----ATEASNAHNFISALPHGYETNVGERGVQLSGGQ 1184 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~-gTIreNl~~g~~-~~~-sd~ei~~----al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1184 (1283)
..+|+.++|+||++.+|. .|++||+.++.. ... .+++..+ .++..++++.+ +..+++. ..+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTP----ATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCC----cccCCHHH
Confidence 577889999999999887 599999975421 111 2333332 23334433322 2233443 45899999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHH
Q 000789 1185 KQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDA 1263 (1283)
Q Consensus 1185 rQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~e 1263 (1283)
|||++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777999999999999986 99999999999999999999
Q ss_pred HHhccCchhHH
Q 000789 1264 LMKITDGAYAS 1274 (1283)
Q Consensus 1264 Ll~~~~g~y~~ 1274 (1283)
++..+...+.+
T Consensus 234 ~~~~~~~~~~~ 244 (252)
T PRK14272 234 LFTNPRDERTE 244 (252)
T ss_pred HHhCcCcHHHH
Confidence 98764444433
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=379.09 Aligned_cols=223 Identities=28% Similarity=0.496 Sum_probs=184.9
Q ss_pred cccEEEEEEEEECCCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCC----C-
Q 000789 372 EGEIELRDVYFRYPARP--EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKK----L- 444 (1283)
Q Consensus 372 ~~~i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----~- 444 (1283)
.+.|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35799999999997432 1359999999999999999999999999999999999999999999999998852 1
Q ss_pred CHHHHhcccEEEccCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHH
Q 000789 445 QLKWIREKIGLVSQEP--ILFATSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLD-TMAGEHGTQLSGGQK 519 (1283)
Q Consensus 445 ~~~~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqk 519 (1283)
+...+|+.|+||+|++ .+|..|++||+.++... ...++..+. +.+.++.+ |+. ......+.+||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKLV--QLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCChhhCCHHHH
Confidence 3456788999999998 46778999999886321 222222221 12333333 442 345667789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChh
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHD 596 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~ 596 (1283)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998753 6899999999999865 9999999999999999999
Q ss_pred HHhcC
Q 000789 597 ELIKD 601 (1283)
Q Consensus 597 ~l~~~ 601 (1283)
++...
T Consensus 237 ~~~~~ 241 (289)
T PRK13645 237 EIFSN 241 (289)
T ss_pred HHhcC
Confidence 88654
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=367.61 Aligned_cols=209 Identities=31% Similarity=0.537 Sum_probs=176.1
Q ss_pred EEEEEEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHH---Hh
Q 000789 375 IELRDVYFRYPARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW---IR 450 (1283)
Q Consensus 375 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r 450 (1283)
|+++||+++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 246999999999999999999999999999999999999999999999999998776543 33
Q ss_pred -cccEEEccCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000789 451 -EKIGLVSQEPILFA-TSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526 (1283)
Q Consensus 451 -~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiAR 526 (1283)
+.++||+|++.+|+ .|++||+.++.. .....+..+ .+.++++.+ |++......+..||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE-----RAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 67999999999886 599999987421 111111111 123455555 6766667777899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEe
Q 000789 527 AILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRNADLIAVVHQGKIV 590 (1283)
Q Consensus 527 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~ 590 (1283)
||+.+|++|||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+..+|+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999998753 68999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=367.43 Aligned_cols=209 Identities=30% Similarity=0.401 Sum_probs=178.4
Q ss_pred cEEEEEEEEECCCCCC-cccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHH---H
Q 000789 1039 AIELRCVSFKYPTRPD-VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW---L 1114 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~-~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---l 1114 (1283)
.|+++||+++|++... .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974311 35999999999999999999999999999999999999999999999999998877543 3
Q ss_pred -hcceEEEccCCCCCh-hhHHHHHhcCCC-CCC----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHH
Q 000789 1115 -RQQMGLVSQEPVLFN-ETIRTNIAYGKQ-GGA----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQR 1187 (1283)
Q Consensus 1115 -R~~i~~V~Qdp~Lf~-gTIreNl~~g~~-~~~----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1187 (1283)
++.++|+||+|.+|. .|++||+.++.. ... ..+++.++++..++.+++...| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 368999999999887 499999975311 111 1345667777777766554433 4799999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhhcCEEEEEeCCEEEEe
Q 000789 1188 IAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKNADIIAVVKNGVIAEQ 1258 (1283)
Q Consensus 1188 laiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~ 1258 (1283)
++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||++++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999998743 6899999999999988999999999999874
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=374.54 Aligned_cols=219 Identities=34% Similarity=0.566 Sum_probs=185.8
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCC--------
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL-------- 444 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~-------- 444 (1283)
+.|+++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999963 3699999999999999999999999999999999999999999999999988542
Q ss_pred -----CHHHHhcccEEEccCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccc-cCCCCCC
Q 000789 445 -----QLKWIREKIGLVSQEPILFAT-SLRENIAYGKE---NATDQEIRTAIELANAAKFIDKLPKGLDTMA-GEHGTQL 514 (1283)
Q Consensus 445 -----~~~~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~-~~~g~~L 514 (1283)
....++++++||+|++.+|+. |++||+.++.. .....+.. ..+.+.++.+ |+.... ......|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR-----ERAVKYLAKV--GIDERAQGKYPVHL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHc--CCChhhhhCCcccC
Confidence 134567899999999999975 99999986421 11221111 1223455555 666554 6677899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEeEe
Q 000789 515 SGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEK 592 (1283)
Q Consensus 515 SgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~ 592 (1283)
|||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999998854 7899999999999986 999999999999999
Q ss_pred cChhHHhcC
Q 000789 593 GTHDELIKD 601 (1283)
Q Consensus 593 g~~~~l~~~ 601 (1283)
|+++++...
T Consensus 234 ~~~~~~~~~ 242 (257)
T PRK10619 234 GAPEQLFGN 242 (257)
T ss_pred CCHHHhhhC
Confidence 999998754
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=371.22 Aligned_cols=218 Identities=27% Similarity=0.457 Sum_probs=187.8
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHH-Hhcc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW-IREK 452 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 452 (1283)
.|+++||+++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999963 36999999999999999999999999999999999999999999999999998776543 5778
Q ss_pred cEEEccCCCCCcc-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 000789 453 IGLVSQEPILFAT-SLRENIAYGKEN---ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAI 528 (1283)
Q Consensus 453 i~~v~Q~~~l~~~-ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal 528 (1283)
++|++|++.+|.. |++||+.++... .+.++ ....++++++.+ |++.........||||||||++|||||
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ-----REDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHH-----HHHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999998875 999999875321 11221 112334566666 777777778889999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 529 LKNPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 529 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
+.+|++|||||||++||+.+.+.+.+.+.++.+ ++|+|++||+++.+.. ||++++|++|++++.|++++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 999999999999999999999999999988754 7899999999988765 999999999999999999988653
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=371.70 Aligned_cols=219 Identities=29% Similarity=0.513 Sum_probs=185.4
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC-----CceEEECCcccCCC--CH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD-----AGEVLIDGIDIKKL--QL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~~--~~ 446 (1283)
.|+++|++|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 35999999999999999999999999999999999999997 69999999988643 44
Q ss_pred HHHhcccEEEccCCCCCcccHHHHHhcCCCC--CC-HHH----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 000789 447 KWIREKIGLVSQEPILFATSLRENIAYGKEN--AT-DQE----IRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~-~~~----~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 519 (1283)
..+|+.++||+|++.+|+.|++||+.++... .. .++ +.++++..++.+ ++.+.....+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWD-------EVKDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCch-------hhhhHhhCCcccCCHHHH
Confidence 5678899999999999999999999886321 11 111 222233333222 223446677889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667899999999999876 899999999999999999998
Q ss_pred hcCC
Q 000789 599 IKDP 602 (1283)
Q Consensus 599 ~~~~ 602 (1283)
...+
T Consensus 234 ~~~~ 237 (251)
T PRK14249 234 FSRP 237 (251)
T ss_pred HhCC
Confidence 7653
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=371.66 Aligned_cols=228 Identities=26% Similarity=0.437 Sum_probs=190.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECC------ccCCCCChH
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDN------IELPKFKLS 1112 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG------~di~~~~~~ 1112 (1283)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .++.+.+..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5999999999974 3589999999999999999999999999999999999999986666554 677777777
Q ss_pred HHhcceEEEccCCCCChh-hHHHHHhcCCC-CCC-CHHH----HHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1113 WLRQQMGLVSQEPVLFNE-TIRTNIAYGKQ-GGA-TEEE----IIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1113 ~lR~~i~~V~Qdp~Lf~g-TIreNl~~g~~-~~~-sd~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
.+|+.++|+||+|.+|.+ |++||+.++.. ... .+++ +.++++..++.+++. ......+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHH
Confidence 889999999999999875 99999986421 111 2333 345555555543321 123345568999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
||++||||++++|++|||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999954 999999999999999999999
Q ss_pred HhccCchhHHHH
Q 000789 1265 MKITDGAYASLV 1276 (1283)
Q Consensus 1265 l~~~~g~y~~L~ 1276 (1283)
.+.+...|.+.+
T Consensus 240 ~~~~~~~~~~~~ 251 (257)
T PRK14246 240 FTSPKNELTEKY 251 (257)
T ss_pred HhCCCcHHHHHH
Confidence 876555565443
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=366.47 Aligned_cols=210 Identities=33% Similarity=0.491 Sum_probs=184.3
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++||+++|+.. ..|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 2 l~~~~l~~~~~~~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECCc-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 7899999999732 239999999999999999999999999999999999999999999999876543 367899
Q ss_pred EEccCCCCChh-hHHHHHhcCCCCC-----CCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1120 LVSQEPVLFNE-TIRTNIAYGKQGG-----ATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qdp~Lf~g-TIreNl~~g~~~~-----~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
|+||++.+|.+ |++||+.++.... ..++++.++++..++.+++.+.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 9999998642111 12456788888888877766655 3799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999998753 7899999999999866 999999999999999999999864
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=381.71 Aligned_cols=213 Identities=22% Similarity=0.410 Sum_probs=184.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
++++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+ +...+|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 889999999963 469999999999999999999999999999999999999999999999999876 4457889999
Q ss_pred EEccCCCCChh-hHHHHHhcCCC-CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1120 LVSQEPVLFNE-TIRTNIAYGKQ-GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qdp~Lf~g-TIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
|+||+|.+|.. |++||+.+... ...+. +++.++++..++. .........||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-----------PEQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCchhhCCHHHHHHHHHHHH
Confidence 99999999865 99999975311 11222 3344444444443 33344456899999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
|+.+|++|||||||++||+.+.+.+++.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998778999999999999877 999999999999999999999764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=384.79 Aligned_cols=214 Identities=29% Similarity=0.471 Sum_probs=182.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|+.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999974 35999999999999999999999999999999999999999999999999987654 5678999
Q ss_pred EEEccCCCCC-hhhHHHHHhcC-CCCCCCHHH----HHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHH
Q 000789 1119 GLVSQEPVLF-NETIRTNIAYG-KQGGATEEE----IIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192 (1283)
Q Consensus 1119 ~~V~Qdp~Lf-~gTIreNl~~g-~~~~~sd~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiAR 1192 (1283)
+||||++.+| ..|++||+.+. .....+.++ +.++++..+ +++..++.++ +||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------L~~~~~~~~~----~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESKADARVS----DLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CchhhCCChh----hCCHHHHHHHHHHH
Confidence 9999999886 67999999742 111223232 223333333 3444555554 79999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1193 AVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1193 All~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
||+.+|++|||||||++||+.+...+++.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999999875 47899999999999976 999999999999999999999764
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=375.36 Aligned_cols=221 Identities=26% Similarity=0.455 Sum_probs=185.6
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEECCcccCC--CCH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD-----PDAGEVLIDGIDIKK--LQL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 446 (1283)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 359999999999999999999999999999999999987 699999999999853 345
Q ss_pred HHHhcccEEEccCCCCCcccHHHHHhcCCC--CCCHH-H----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 000789 447 KWIREKIGLVSQEPILFATSLRENIAYGKE--NATDQ-E----IRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~~~~-~----~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 519 (1283)
..++++++|++|++.+|..|++||+.++.. ...++ . +.++++..++ .+++.......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAI-------WDELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCC-------cchHHHHHhcCcccCCHHHH
Confidence 567889999999999998999999987532 11111 1 1222222211 12334455677889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999875 999999999999999999999
Q ss_pred hcCCCC
Q 000789 599 IKDPEG 604 (1283)
Q Consensus 599 ~~~~~~ 604 (1283)
..++..
T Consensus 254 ~~~~~~ 259 (271)
T PRK14238 254 FSNPSD 259 (271)
T ss_pred HcCCCC
Confidence 766433
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=373.45 Aligned_cols=223 Identities=30% Similarity=0.490 Sum_probs=189.1
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCC-----cceEEECCccCCC--CC
Q 000789 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD-----SGHVLLDNIELPK--FK 1110 (1283)
Q Consensus 1038 g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~-----~G~I~idG~di~~--~~ 1110 (1283)
+.|+++||+++|++ ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 36999999999974 35999999999999999999999999999999999999985 8999999999853 34
Q ss_pred hHHHhcceEEEccCCCCChhhHHHHHhcCCC-CCC-C----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhH
Q 000789 1111 LSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA-T----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQ 1184 (1283)
Q Consensus 1111 ~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~-s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1184 (1283)
...+|+.++|+||++.+|..|++||+.++.. ... + ++.+.++++..++.+++.. ..+..+..|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 5678899999999999999999999976411 011 2 2345667777776554432 2344556899999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhh-cCEEEEEeC-----CEEE
Q 000789 1185 KQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKN-----GVIA 1256 (1283)
Q Consensus 1185 rQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~-----G~Iv 1256 (1283)
|||++||||++++|++|||||||++||+++...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999999863 47999999999999876 999999999 9999
Q ss_pred EecChHHHHhccCc
Q 000789 1257 EQGSHDALMKITDG 1270 (1283)
Q Consensus 1257 e~Gt~~eLl~~~~g 1270 (1283)
+.|+++++...+..
T Consensus 236 ~~~~~~~~~~~~~~ 249 (261)
T PRK14258 236 EFGLTKKIFNSPHD 249 (261)
T ss_pred EeCCHHHHHhCCCC
Confidence 99999999865444
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=365.95 Aligned_cols=205 Identities=28% Similarity=0.447 Sum_probs=174.5
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChH---HHhc
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLS---WLRQ 1116 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR~ 1116 (1283)
|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999877644 3688
Q ss_pred ceEEEccCCCC-ChhhHHHHHhcCCC-CCCCHH----HHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHH
Q 000789 1117 QMGLVSQEPVL-FNETIRTNIAYGKQ-GGATEE----EIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAI 1190 (1283)
Q Consensus 1117 ~i~~V~Qdp~L-f~gTIreNl~~g~~-~~~sd~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlai 1190 (1283)
.++|+||+|.+ +..|++||+.++.. ...+++ ++.++++..++.+...+ ...+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHH
Confidence 99999999986 57799999986421 122332 34556666666554433 335899999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEE
Q 000789 1191 ARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAE 1257 (1283)
Q Consensus 1191 ARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive 1257 (1283)
|||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999874 46899999999999977 89999999999853
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=373.87 Aligned_cols=224 Identities=29% Similarity=0.449 Sum_probs=190.3
Q ss_pred cccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CcceEEECCccCC----
Q 000789 1037 GGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-----DSGHVLLDNIELP---- 1107 (1283)
Q Consensus 1037 ~g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~---- 1107 (1283)
.+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 356999999999974 3599999999999999999999999999999999999875 7999999998874
Q ss_pred CCChHHHhcceEEEccCCCCChhhHHHHHhcCCC-CC-----CCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCC
Q 000789 1108 KFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GG-----ATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLS 1181 (1283)
Q Consensus 1108 ~~~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~-----~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1181 (1283)
..+...+|+.++|+||++.+|.+|++||+.++.. .. ..++++.++++.+++.+.+ .+........||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV-------KDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh-------hHHHhCCcccCC
Confidence 2344578899999999999999999999986421 11 1235566777777664332 233445566899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecC
Q 000789 1182 GGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260 (1283)
Q Consensus 1182 gGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt 1260 (1283)
||||||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999998777899999999999965 99999999999999999
Q ss_pred hHHHHhccCc
Q 000789 1261 HDALMKITDG 1270 (1283)
Q Consensus 1261 ~~eLl~~~~g 1270 (1283)
++++...+..
T Consensus 244 ~~~~~~~~~~ 253 (265)
T PRK14252 244 TDTIFIKPKN 253 (265)
T ss_pred HHHHHhCCCC
Confidence 9999764333
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=373.33 Aligned_cols=221 Identities=22% Similarity=0.394 Sum_probs=183.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHH-hcc
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWL-RQQ 1117 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~ 1117 (1283)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999973 469999999999999999999999999999999999999999999999999988776554 456
Q ss_pred eEEEccCCCCChh-hHHHHHhcCCCCC--------------CCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCCh
Q 000789 1118 MGLVSQEPVLFNE-TIRTNIAYGKQGG--------------ATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSG 1182 (1283)
Q Consensus 1118 i~~V~Qdp~Lf~g-TIreNl~~g~~~~--------------~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1182 (1283)
++|+||+|.+|.. |++||+.++.... ..++ ..+.. ..+.++++.+ |++........+|||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~l~~~--gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRA-ESEAL--DRAATWLERV--GLLEHANRQAGNLAY 156 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccc-hhHHH--HHHHHHHHhC--ChhhhhhCChhhCCH
Confidence 9999999999975 9999998752100 0000 00000 1122333333 444445566678999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEec
Q 000789 1183 GQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259 (1283)
Q Consensus 1183 GQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1259 (1283)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 236 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecC
Confidence 999999999999999999999999999999999999999998753 7899999999999866 9999999999999999
Q ss_pred ChHHHHhc
Q 000789 1260 SHDALMKI 1267 (1283)
Q Consensus 1260 t~~eLl~~ 1267 (1283)
+++++...
T Consensus 237 ~~~~~~~~ 244 (255)
T PRK11300 237 TPEEIRNN 244 (255)
T ss_pred CHHHHhhC
Confidence 99998753
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=372.91 Aligned_cols=225 Identities=27% Similarity=0.472 Sum_probs=187.4
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccCCC--CH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIKKL--QL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 446 (1283)
.|+++||+|+|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 3599999999999999999999999999999999999763 489999999998765 44
Q ss_pred HHHhcccEEEccCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 000789 447 KWIREKIGLVSQEPILFATSLRENIAYGKENA---TD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 519 (1283)
...++.++|++|++.+|+.|++||+.++.... .. +.+.++++..++. +++.+..++.+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALW-------DEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCc-------hhhHHHhhcChhhCCHHHH
Confidence 56778899999999999999999999863211 11 1222333332221 2233456778889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999975 999999999999999999998
Q ss_pred hcCCCChhHH
Q 000789 599 IKDPEGPYTQ 608 (1283)
Q Consensus 599 ~~~~~~~~~~ 608 (1283)
..++...+.+
T Consensus 236 ~~~~~~~~~~ 245 (253)
T PRK14261 236 FENPHEELTE 245 (253)
T ss_pred HhCCCcHHHH
Confidence 7654333443
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=374.72 Aligned_cols=222 Identities=31% Similarity=0.530 Sum_probs=183.5
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEECCcccCCCC--HH
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD-----PDAGEVLIDGIDIKKLQ--LK 447 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~~~--~~ 447 (1283)
-+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999963 369999999999999999999999999999999999986 47999999999886543 33
Q ss_pred HHhcccEEEccCCCCCcccHHHHHhcCCC--CC--CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 000789 448 WIREKIGLVSQEPILFATSLRENIAYGKE--NA--TD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519 (1283)
Q Consensus 448 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~--~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 519 (1283)
.+|+.++||+|++.+|+.|++||+.++.. .. .. +++.++++..++.++ +.+.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-------LGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhcChhhCCHHHH
Confidence 56789999999999999999999987521 11 11 122233333322211 12345667789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999875 999999999999999999999
Q ss_pred hcCCCChh
Q 000789 599 IKDPEGPY 606 (1283)
Q Consensus 599 ~~~~~~~~ 606 (1283)
...+...+
T Consensus 236 ~~~~~~~~ 243 (251)
T PRK14244 236 FKNPQSSK 243 (251)
T ss_pred hcCCCChH
Confidence 87644433
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=367.33 Aligned_cols=209 Identities=35% Similarity=0.530 Sum_probs=174.2
Q ss_pred EEEEEEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 375 IELRDVYFRYPARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 375 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
|+++|++++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999997421 1469999999999999999999999999999999999999999999999998763 35789
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhc
Q 000789 454 GLVSQEPILFA-TSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILK 530 (1283)
Q Consensus 454 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~ 530 (1283)
+||+|++.+|+ .|++||+.++... ...++.. ..+.+.++.+ |++........+||||||||++|||||+.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-----ERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999987 5999999875321 1111111 1223444444 55555566667999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEe--CCEEeEecCh
Q 000789 531 NPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRN-ADLIAVVH--QGKIVEKGTH 595 (1283)
Q Consensus 531 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~--~G~i~~~g~~ 595 (1283)
+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|+ +|+++++++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999874 36899999999998865 99999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=365.12 Aligned_cols=207 Identities=32% Similarity=0.547 Sum_probs=174.4
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 478999999964 3699999999999999999999999999999999999999999999999998765432 46899
Q ss_pred EEccCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 455 LVSQEPILFA-TSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 455 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
|++|++.+|. .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 5999999875321 12222111 122334444 555555666789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEec
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKG 593 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 593 (1283)
|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999998753 6899999999999876 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=382.02 Aligned_cols=217 Identities=26% Similarity=0.461 Sum_probs=183.1
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++... ....|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999998653 34568899
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhc
Q 000789 454 GLVSQEPILFA-TSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILK 530 (1283)
Q Consensus 454 ~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~ 530 (1283)
||+||++.++. .|++||+.+... ..+..+..+.+ .+.++.+ |++........+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 99999999886 599999975321 12222222211 2233333 55555556667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 531 NPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 531 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999875 47899999999999975 999999999999999999998754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=384.50 Aligned_cols=217 Identities=28% Similarity=0.508 Sum_probs=184.0
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++||+++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|+++...+ ...++.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999987654 4678899
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhc
Q 000789 454 GLVSQEPILFA-TSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILK 530 (1283)
Q Consensus 454 ~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~ 530 (1283)
||+||++.++. .|++||+.+... ..+..+..+.+ .++++.+ |++........+||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADARVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999875 599999986321 12222222211 2333333 55544556667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 531 NPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 531 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999998854 7899999999999976 999999999999999999998754
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=368.24 Aligned_cols=214 Identities=30% Similarity=0.509 Sum_probs=180.4
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHH-Hhccc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW-IREKI 453 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 453 (1283)
|+++||++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999973 36999999999999999999999999999999999999999999999999998776554 46789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000789 454 GLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNP 532 (1283)
Q Consensus 454 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~ 532 (1283)
+|++|++.+|+. |++||+.++.......+ .+. .++.++.+ ++++........+||||||||++|||||+++|
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~-~~~-----~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRS-RKI-----PDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcch-HHH-----HHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 99999987643211110 000 11222222 12344456677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 533 KILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 533 ~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999998764 6899999999999986 999999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=365.69 Aligned_cols=211 Identities=28% Similarity=0.447 Sum_probs=180.6
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4999999999974 3599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCCCCChhhHHHHHhcCCC--CC-CCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHc
Q 000789 1119 GLVSQEPVLFNETIRTNIAYGKQ--GG-ATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVL 1195 (1283)
Q Consensus 1119 ~~V~Qdp~Lf~gTIreNl~~g~~--~~-~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll 1195 (1283)
+|+||++.+|+.|++||+.++.. .. ..++++.+.++..++.+ +.......+||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999999999999999975311 11 12233444555544421 2234455689999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhhcCEEEEEe-CCEEEEecChH
Q 000789 1196 KNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKNADIIAVVK-NGVIAEQGSHD 1262 (1283)
Q Consensus 1196 ~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~D~I~vl~-~G~Ive~Gt~~ 1262 (1283)
++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||++++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999998753 789999999999998899999995 66777889885
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=372.97 Aligned_cols=212 Identities=27% Similarity=0.492 Sum_probs=183.6
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 36999999999999999999999999999999999999999999999999988877777888899
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCCC-------C---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 000789 455 LVSQEPILFAT-SLRENIAYGKENA-------T---DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIA 523 (1283)
Q Consensus 455 ~v~Q~~~l~~~-ti~~ni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqria 523 (1283)
|++|++.++.+ |+.||+.++.... . .+++.++++.. |++......+..||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT-----------RINHLADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHc-----------CCHHHHcCCcccCCHHHHHHHH
Confidence 99999998876 9999999863210 1 11233333333 4444455667899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhc
Q 000789 524 IARAILKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600 (1283)
Q Consensus 524 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 600 (1283)
||||++.+|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999999999875 47899999999999875 99999999999999999988864
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=366.19 Aligned_cols=213 Identities=35% Similarity=0.509 Sum_probs=173.2
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCCh---HHHh
Q 000789 1040 IELRCVSFKYPTRP-DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKL---SWLR 1115 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~---~~lR 1115 (1283)
|+++||+++|+.+. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999997431 1269999999999999999999999999999999999999999999999999987763 5778
Q ss_pred cceEEEccCC--CCC-hhhHHHHHhcCCC---CCCCHHHHHHHHHHhChHHHHHhCCCCcc-cccCCCCCCCChhHHHHH
Q 000789 1116 QQMGLVSQEP--VLF-NETIRTNIAYGKQ---GGATEEEIIAATEASNAHNFISALPHGYE-TNVGERGVQLSGGQKQRI 1188 (1283)
Q Consensus 1116 ~~i~~V~Qdp--~Lf-~gTIreNl~~g~~---~~~sd~ei~~al~~a~l~~~I~~lp~Gld-t~vge~G~~LSgGQrQRl 1188 (1283)
++++|+||+| .++ ..|++||+.++.. ....+++...+. .+.+..+ |++ ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 8999999999 344 5799999975311 111122111111 1222332 232 233445568999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEec
Q 000789 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259 (1283)
Q Consensus 1189 aiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1259 (1283)
+||||++.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998764 7899999999999884 9999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=370.17 Aligned_cols=205 Identities=34% Similarity=0.486 Sum_probs=176.2
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcc
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREK 452 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 452 (1283)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .++++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARED 82 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCc
Confidence 35999999999963 36999999999999999999999999999999999999999999999997653 45778
Q ss_pred cEEEccCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 453 IGLVSQEPILFA-TSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 453 i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
++|++|++.+|+ .|++||+.++.....++++.++ ++.+ |++......+.+||||||||++|||||+++
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~---------l~~~--gl~~~~~~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQA---------LAAV--GLADRANEWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhcccchHHHHHHHH---------HHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999987 5999999986432112333333 3444 555555667789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChh
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHD 596 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~ 596 (1283)
|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999874 36899999999999865 9999999999999988764
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=362.87 Aligned_cols=202 Identities=25% Similarity=0.458 Sum_probs=171.2
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.. .+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999973 359999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEccCCCCCh-hhHHHHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1120 LVSQEPVLFN-ETIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qdp~Lf~-gTIreNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
|+||++.+|. .|++||+.+... ...+ ++++.++++..++.+. ......+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEY-----------ANKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHH-----------HhCcHhhCCHHHHHHHHHHHH
Confidence 9999999887 499999976311 1122 2334445555444433 334456899999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEec
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1259 (1283)
++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999999875 47899999999999866 9999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=370.81 Aligned_cols=220 Identities=30% Similarity=0.491 Sum_probs=185.3
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccCCC--CH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIKKL--QL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 446 (1283)
.|+++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 3599999999999999999999999999999999999875 799999999998653 34
Q ss_pred HHHhcccEEEccCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 000789 447 KWIREKIGLVSQEPILFATSLRENIAYGKEN--A-TD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 519 (1283)
...++.++|++|++.+|+.|++||+.++... . +. +++.++++.+++.+ ++..........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD-------EVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHHH
Confidence 4668889999999999999999999875321 1 11 12333333333321 222345567789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
||++||||++.+|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999876 999999999999999999998
Q ss_pred hcCCC
Q 000789 599 IKDPE 603 (1283)
Q Consensus 599 ~~~~~ 603 (1283)
...+.
T Consensus 234 ~~~~~ 238 (251)
T PRK14270 234 FLEPQ 238 (251)
T ss_pred hcCCC
Confidence 76533
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=382.81 Aligned_cols=229 Identities=22% Similarity=0.346 Sum_probs=188.4
Q ss_pred cEEEEEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC----CCcceEEECCccCCCCChHH
Q 000789 1039 AIELRCVSFKYPTRP-DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD----PDSGHVLLDNIELPKFKLSW 1113 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~----~~~G~I~idG~di~~~~~~~ 1113 (1283)
-|+++|++++|+.+. ...+|+||||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||+++.+++...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 389999999996421 2469999999999999999999999999999999999986 58999999999998888765
Q ss_pred Hh----cceEEEccCCCC--C-hhhHHHHHhcC---C-C-C----C--CCHHHHHHHHHHhChHHHHHhCCCCcccccCC
Q 000789 1114 LR----QQMGLVSQEPVL--F-NETIRTNIAYG---K-Q-G----G--ATEEEIIAATEASNAHNFISALPHGYETNVGE 1175 (1283)
Q Consensus 1114 lR----~~i~~V~Qdp~L--f-~gTIreNl~~g---~-~-~----~--~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge 1175 (1283)
++ +.|+||||+|.. + ..||.+|+... . . . . ..++++.++++.+++.+.-. ....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhC
Confidence 53 479999999963 3 45899988531 0 0 0 0 01245667777777753211 1122
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeC
Q 000789 1176 RGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKN 1252 (1283)
Q Consensus 1176 ~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~ 1252 (1283)
...+||||||||++|||||+.+|+|||||||||+||+.+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 3358999999999999999999999999999999999999999999998764 7899999999999976 999999999
Q ss_pred CEEEEecChHHHHhccCchhHHH
Q 000789 1253 GVIAEQGSHDALMKITDGAYASL 1275 (1283)
Q Consensus 1253 G~Ive~Gt~~eLl~~~~g~y~~L 1275 (1283)
|+|+|.|+++++.+.+...|.+.
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHH
Confidence 99999999999988666677653
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=371.96 Aligned_cols=223 Identities=28% Similarity=0.431 Sum_probs=186.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC--C---CcceEEECCccCCC--CCh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD--P---DSGHVLLDNIELPK--FKL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--~---~~G~I~idG~di~~--~~~ 1111 (1283)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999974 359999999999999999999999999999999999975 4 58999999999864 344
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCC-CCC-C----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQ-GGA-T----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~-s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1185 (1283)
..+|+.++|+||++.+|..|+++|+.++.. ... . ++++.++++.+++.+.+ .........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHH
Confidence 567889999999999999999999986411 111 1 23455556666554332 2223444568999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHH
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264 (1283)
Q Consensus 1186 QRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1264 (1283)
||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|++.+.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999865 999999999999999999999
Q ss_pred HhccCch
Q 000789 1265 MKITDGA 1271 (1283)
Q Consensus 1265 l~~~~g~ 1271 (1283)
...+...
T Consensus 235 ~~~~~~~ 241 (252)
T PRK14255 235 FLNPKEK 241 (252)
T ss_pred hcCCCCh
Confidence 8754443
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=349.98 Aligned_cols=172 Identities=41% Similarity=0.698 Sum_probs=162.1
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++|++++|++. ..++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999743 246999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccCCCCChhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 000789 1120 LVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPK 1199 (1283)
Q Consensus 1120 ~V~Qdp~Lf~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ 1199 (1283)
|++|+|.+|+.|++||+ ||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~tv~~~l-------------------------------------------LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 80 YLPQDDELFSGSIAENI-------------------------------------------LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred EECCCCccccCcHHHHC-------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999997 99999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhhcCEEEEEeCCEE
Q 000789 1200 ILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKNADIIAVVKNGVI 1255 (1283)
Q Consensus 1200 ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~~D~I~vl~~G~I 1255 (1283)
+|||||||++||+.+...+.+.|+++. +++|+|++||+++.+..||++++|++|++
T Consensus 117 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999999999875 47899999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=371.33 Aligned_cols=219 Identities=30% Similarity=0.505 Sum_probs=183.8
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccCCC--CH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIKKL--QL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 446 (1283)
.|+++||++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 3699999999999999999999999999999999999984 899999999988653 33
Q ss_pred HHHhcccEEEccCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 000789 447 KWIREKIGLVSQEPILFATSLRENIAYGKEN---ATD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 519 (1283)
..+++.++|++|++.+|+.|++||+.++... ... +++.++++..++++.+ ++.....+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHH
Confidence 4567889999999999999999999875311 111 1223333333332211 2345677889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
||++|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999998777899999999998765 999999999999999999998
Q ss_pred hcCC
Q 000789 599 IKDP 602 (1283)
Q Consensus 599 ~~~~ 602 (1283)
.+.+
T Consensus 233 ~~~~ 236 (250)
T PRK14262 233 VERP 236 (250)
T ss_pred HhCC
Confidence 7653
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=372.88 Aligned_cols=221 Identities=30% Similarity=0.461 Sum_probs=188.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CcceEEECCccCCC--CCh
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP-----DSGHVLLDNIELPK--FKL 1111 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~~~ 1111 (1283)
.|+++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 5999999999974 3599999999999999999999999999999999999864 58999999999864 344
Q ss_pred HHHhcceEEEccCCCCChhhHHHHHhcCCCC-C---CCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHH
Q 000789 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQG-G---ATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQR 1187 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~-~---~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1187 (1283)
..+|++|+|+||++.+|+.|+.||+.++... . ..++++.++++.+++.+.+.. ........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHH
Confidence 5678999999999999988999999875210 1 123445667777776554432 2234456899999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEEEEEe---------CCEEEE
Q 000789 1188 IAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVK---------NGVIAE 1257 (1283)
Q Consensus 1188 laiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~---------~G~Ive 1257 (1283)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998778999999999999865 99999997 899999
Q ss_pred ecChHHHHhccC
Q 000789 1258 QGSHDALMKITD 1269 (1283)
Q Consensus 1258 ~Gt~~eLl~~~~ 1269 (1283)
.|+++++...+.
T Consensus 250 ~g~~~~~~~~~~ 261 (274)
T PRK14265 250 FSPTEQMFGSPQ 261 (274)
T ss_pred eCCHHHHHhCCC
Confidence 999999986533
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=367.19 Aligned_cols=213 Identities=36% Similarity=0.537 Sum_probs=176.6
Q ss_pred EEEEEEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCH---HHHh
Q 000789 375 IELRDVYFRYPARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL---KWIR 450 (1283)
Q Consensus 375 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r 450 (1283)
|+++||+++|++.. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996421 1269999999999999999999999999999999999999999999999999987763 5678
Q ss_pred cccEEEccCC--CCC-cccHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 000789 451 EKIGLVSQEP--ILF-ATSLRENIAYGKENA---TDQEIRTAIELANAAKFIDKLPKGLD-TMAGEHGTQLSGGQKQRIA 523 (1283)
Q Consensus 451 ~~i~~v~Q~~--~l~-~~ti~~ni~~~~~~~---~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqkqria 523 (1283)
++++|++|++ .++ ..|++||+.++.... ..++..+.+ .++.++.+ |+. ........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH----HHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 8999999999 344 469999998642111 111111100 12445555 564 4567778899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEec
Q 000789 524 IARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKG 593 (1283)
Q Consensus 524 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 593 (1283)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998864 7899999999999874 9999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=369.57 Aligned_cols=218 Identities=30% Similarity=0.492 Sum_probs=184.8
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccC-CCCHH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIK-KLQLK 447 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~-~~~~~ 447 (1283)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999963 4699999999999999999999999999999999999986 5999999999885 44566
Q ss_pred HHhcccEEEccCCCCCcccHHHHHhcCCCC--CC-H----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000789 448 WIREKIGLVSQEPILFATSLRENIAYGKEN--AT-D----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQ 520 (1283)
Q Consensus 448 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~-~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkq 520 (1283)
.+|+.++|++|++.+|+.|++||+.++... .. . +++.++++..++.+ ++.+.....+.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD-------EVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCch-------hhhHHhhcCcccCCHHHHH
Confidence 778899999999999999999999876321 11 1 12223333333322 2224456677899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHh
Q 000789 521 RIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELI 599 (1283)
Q Consensus 521 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 599 (1283)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|+|++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777899999999999876 9999999999999999999886
Q ss_pred cC
Q 000789 600 KD 601 (1283)
Q Consensus 600 ~~ 601 (1283)
.+
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 54
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=367.35 Aligned_cols=216 Identities=30% Similarity=0.499 Sum_probs=184.0
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccC------CCCHHH
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIK------KLQLKW 448 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~------~~~~~~ 448 (1283)
|+++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999963 36999999999999999999999999999999999999999999999999873 123456
Q ss_pred HhcccEEEccCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000789 449 IREKIGLVSQEPILFAT-SLRENIAYGKE---NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAI 524 (1283)
Q Consensus 449 ~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriai 524 (1283)
+|++|+|++|++.+|.+ |++||+.++.. ....++.. ..+.++++.+ |++........+||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence 78899999999999875 99999975311 11222211 1234556665 77767777788999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhc
Q 000789 525 ARAILKNPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600 (1283)
Q Consensus 525 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 600 (1283)
|||++.+|++|||||||++||+++...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 9999999999999999999999999999999998764 7899999999999865 99999999999999999888753
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=374.93 Aligned_cols=217 Identities=27% Similarity=0.465 Sum_probs=180.8
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccC--CCCHHHHhcc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIK--KLQLKWIREK 452 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 452 (1283)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 35999999999999999999999999999999999999999999999999985 3344567889
Q ss_pred cEEEccCCC--CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 000789 453 IGLVSQEPI--LFATSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAI 528 (1283)
Q Consensus 453 i~~v~Q~~~--l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal 528 (1283)
|+||+|++. ++..|+.+|+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||++|||||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITR-----RVDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 999999985 567799999987421 122222211 112233333 444344556679999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 529 LKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 529 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999875 46899999999999865 999999999999999999988754
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=371.74 Aligned_cols=223 Identities=25% Similarity=0.458 Sum_probs=188.2
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHH-hcc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWI-REK 452 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 452 (1283)
.|+++|+++.|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999987775544 456
Q ss_pred cEEEccCCCCCcc-cHHHHHhcCCCCCCH----------HHH--HHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 000789 453 IGLVSQEPILFAT-SLRENIAYGKENATD----------QEI--RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519 (1283)
Q Consensus 453 i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~----------~~~--~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 519 (1283)
++|++|++.+|.. |++||+.++...... ... ........+.++++.+ |++......+.+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 9999999999986 999999986321000 000 0001112234556666 777778888899999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChh
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHD 596 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~ 596 (1283)
||++|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 999999999999999999999999999999999999998754 6899999999999866 9999999999999999998
Q ss_pred HHhcC
Q 000789 597 ELIKD 601 (1283)
Q Consensus 597 ~l~~~ 601 (1283)
++...
T Consensus 240 ~~~~~ 244 (255)
T PRK11300 240 EIRNN 244 (255)
T ss_pred HHhhC
Confidence 87643
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=369.33 Aligned_cols=228 Identities=26% Similarity=0.434 Sum_probs=185.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCcc-----CCCCChHH
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIE-----LPKFKLSW 1113 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~d-----i~~~~~~~ 1113 (1283)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999974 359999999999999999999999999999999999999999999999998 77766544
Q ss_pred ----HhcceEEEccCCC--CC-hhhHHHHHhcCC--CCCCCHHHHHHHHHHhChHHHHHhCCCCcc-cccCCCCCCCChh
Q 000789 1114 ----LRQQMGLVSQEPV--LF-NETIRTNIAYGK--QGGATEEEIIAATEASNAHNFISALPHGYE-TNVGERGVQLSGG 1183 (1283)
Q Consensus 1114 ----lR~~i~~V~Qdp~--Lf-~gTIreNl~~g~--~~~~sd~ei~~al~~a~l~~~I~~lp~Gld-t~vge~G~~LSgG 1183 (1283)
+|+.++||||++. ++ ..|+.+|+.+.. .......++.+ .+.++++.++ ++ +.....+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~--l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVE--IDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcC--CChhHHhCCCccCCHH
Confidence 3567999999984 33 458888885421 01111122211 1345555553 32 3456667799999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecC
Q 000789 1184 QKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260 (1283)
Q Consensus 1184 QrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt 1260 (1283)
||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988753 7899999999999975 99999999999999999
Q ss_pred hHHHHhccCchhHHHH
Q 000789 1261 HDALMKITDGAYASLV 1276 (1283)
Q Consensus 1261 ~~eLl~~~~g~y~~L~ 1276 (1283)
++++...+...|.+.+
T Consensus 236 ~~~~~~~~~~~~~~~~ 251 (258)
T PRK11701 236 TDQVLDDPQHPYTQLL 251 (258)
T ss_pred HHHHhcCCCCHHHHHH
Confidence 9999875455565443
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=372.00 Aligned_cols=222 Identities=26% Similarity=0.473 Sum_probs=187.2
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccCCCC-H
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIKKLQ-L 446 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~-~ 446 (1283)
..++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+ .
T Consensus 20 ~~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 20 PAMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cEEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 35899999999963 3699999999999999999999999999999999999986 7999999999987653 3
Q ss_pred HHHhcccEEEccCCCCCcccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhC--CCCccccccCCCCCCChHHHHH
Q 000789 447 KWIREKIGLVSQEPILFATSLRENIAYGKE---NATDQEIRTAIELANAAKFIDKL--PKGLDTMAGEHGTQLSGGQKQR 521 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l--p~g~~t~~~~~g~~LSgGqkqr 521 (1283)
..++++++|++|++.+|+.|++||+.++.. ..+.++..+.+ .+.++.+ +..+++.+.+.+.+||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHH
Confidence 467889999999999999999999997632 12333332211 1223333 2122245667788999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhc
Q 000789 522 IAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600 (1283)
Q Consensus 522 iaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 600 (1283)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988767899999999999875 99999999999999999999987
Q ss_pred CC
Q 000789 601 DP 602 (1283)
Q Consensus 601 ~~ 602 (1283)
.+
T Consensus 252 ~~ 253 (276)
T PRK14271 252 SP 253 (276)
T ss_pred Cc
Confidence 53
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=369.89 Aligned_cols=216 Identities=30% Similarity=0.477 Sum_probs=183.4
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999973 35999999999999999999999999999999999999999999999999998877777788999
Q ss_pred EEccCCCC-CcccHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh--
Q 000789 455 LVSQEPIL-FATSLRENIAYGKENA--TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAIL-- 529 (1283)
Q Consensus 455 ~v~Q~~~l-~~~ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~-- 529 (1283)
|++|++.+ +..|++||+.++.... ..++..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDA-----LVAAALAQV--DLAHLAGRDYPQLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHH-----HHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 99999987 5679999998864211 1111111 112333333 5555556667899999999999999999
Q ss_pred ----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhc
Q 000789 530 ----KNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600 (1283)
Q Consensus 530 ----~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 600 (1283)
.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5999999999999999999999999999875 46899999999999875 99999999999999999988864
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=365.15 Aligned_cols=212 Identities=31% Similarity=0.531 Sum_probs=184.7
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++|++++|++ .+|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. .|+.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999963 27999999999999999999999999999999999999999999999999877654 378999
Q ss_pred EEccCCCCCh-hhHHHHHhcCCC-CCC----CHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1120 LVSQEPVLFN-ETIRTNIAYGKQ-GGA----TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qdp~Lf~-gTIreNl~~g~~-~~~----sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
|+||++.+|. .|++||+.++.. ... .++++.++++..++.+++.+.| .+||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHH
Confidence 9999999885 799999986421 111 2345667777777766655443 4799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhcc
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKIT 1268 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~ 1268 (1283)
++++|++|+|||||++||+.+.+.+.+.|+++.. ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 9999999999999999999999999999998753 7899999999999876 9999999999999999999998753
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=372.61 Aligned_cols=220 Identities=30% Similarity=0.506 Sum_probs=185.9
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999743 23589999999999999999999999999999999999999999999999999888877888999
Q ss_pred EEEccCCC-CC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 000789 454 GLVSQEPI-LF-ATSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAIL 529 (1283)
Q Consensus 454 ~~v~Q~~~-l~-~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~ 529 (1283)
+|++|++. +| ..|+++|+.++... ...++..+ .+.+.++.+ |+.......+.+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR-----RVSEALKQV--DMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 44 56899999886432 12222111 112233333 4444455667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEeEecChhHHhcC
Q 000789 530 KNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 530 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999998753 6899999999999878999999999999999999998754
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=379.98 Aligned_cols=216 Identities=25% Similarity=0.454 Sum_probs=188.0
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
++++|++++|++ ..+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+++++|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876 3456788999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 455 LVSQEPILFAT-SLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 455 ~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
|+||++.+|+. |+.||+.+.... ...++..+ .+++.++.+ |++.........||||||||++|||||+++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 999999863211 12222211 223455565 777777788889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|++|||||||++||+.+.+.+++.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999998778999999999999876 999999999999999999998654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=363.98 Aligned_cols=201 Identities=33% Similarity=0.539 Sum_probs=170.0
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHH---HHhc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLK---WIRE 451 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r~ 451 (1283)
|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999876543 4678
Q ss_pred ccEEEccCCCCCc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000789 452 KIGLVSQEPILFA-TSLRENIAYGKEN--AT----DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAI 524 (1283)
Q Consensus 452 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriai 524 (1283)
.++|++|++.+|. .|++||+.++... .. ++++.++++..+ +.........+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVG-----------LEHKADAFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHHHH
Confidence 8999999999986 5999999875211 11 123334444443 3333344456899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCE
Q 000789 525 ARAILKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGK 588 (1283)
Q Consensus 525 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~ 588 (1283)
||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999875 47899999999999986 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=351.33 Aligned_cols=178 Identities=38% Similarity=0.684 Sum_probs=164.8
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++... ...+++.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999743 23699999999999999999999999999999999999999999999999988665 556788999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000789 455 LVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKI 534 (1283)
Q Consensus 455 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~i 534 (1283)
|++|++.+|+.|++||+ +.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 458999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEeEec
Q 000789 535 LLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKG 593 (1283)
Q Consensus 535 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g 593 (1283)
|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887788999999999999889999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=385.24 Aligned_cols=212 Identities=28% Similarity=0.443 Sum_probs=185.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCC----ChHHHh
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF----KLSWLR 1115 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~----~~~~lR 1115 (1283)
|++ ||+++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+. +....|
T Consensus 2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 667 999999642 23 99999999999999999999999999999999999999999999998653 244568
Q ss_pred cceEEEccCCCCCh-hhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHH
Q 000789 1116 QQMGLVSQEPVLFN-ETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAV 1194 (1283)
Q Consensus 1116 ~~i~~V~Qdp~Lf~-gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAl 1194 (1283)
++++||||++.+|. .|++||+.++.. ...++++.++++..++.++....| .+||||||||++|||||
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL 143 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMA-KSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRAL 143 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhh-hhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 89999999999985 699999998632 334567777888877766554443 48999999999999999
Q ss_pred ccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhccC
Q 000789 1195 LKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITD 1269 (1283)
Q Consensus 1195 l~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~~ 1269 (1283)
+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 999999999999999999999999999998754 6899999999998866 99999999999999999999998654
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=363.63 Aligned_cols=211 Identities=27% Similarity=0.460 Sum_probs=182.6
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.|+++||++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5899999999963 3699999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEEccCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHHhc
Q 000789 454 GLVSQEPILFATSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLD-TMAGEHGTQLSGGQKQRIAIARAILK 530 (1283)
Q Consensus 454 ~~v~Q~~~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqkqriaiARal~~ 530 (1283)
+|++|++.+|+.|++||+.++.. ....++ ..+.+.++.+ |+. +.....+.+||||||||++|||||++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP-------AIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHH-------HHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999987421 011110 1123455555 664 45677888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEe-CCEEeEecChh
Q 000789 531 NPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRNADLIAVVH-QGKIVEKGTHD 596 (1283)
Q Consensus 531 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~-~G~i~~~g~~~ 596 (1283)
+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999998753 689999999999998899999995 67778889885
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=362.90 Aligned_cols=205 Identities=39% Similarity=0.655 Sum_probs=173.2
Q ss_pred EEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccEE
Q 000789 376 ELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGL 455 (1283)
Q Consensus 376 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 455 (1283)
+++|++++|++. +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999642 1469999999999999999999999999999999999999999999999999987777778889999
Q ss_pred EccCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 456 VSQEPI--LFATSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 456 v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
++|++. ++..|++||+.++... .+..+..+ .+.+.++.+ |++.........||||||||++|||||+.+
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999983 5678999999875321 12221111 122344444 555556667789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCE
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGK 588 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~ 588 (1283)
|++|||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999998764 7899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=382.01 Aligned_cols=230 Identities=24% Similarity=0.387 Sum_probs=187.0
Q ss_pred cEEEEEEEEECCCC-CCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC----CCCceEEECCcccCCCCHHH
Q 000789 374 EIELRDVYFRYPAR-PEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD----PDAGEVLIDGIDIKKLQLKW 448 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~-~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~----~~~G~i~~~g~~~~~~~~~~ 448 (1283)
-|+++|++++|+.. ....+|+||||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||+++..++...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37899999999632 12469999999999999999999999999999999999986 58999999999998887655
Q ss_pred Hh----cccEEEccCCC--CCc-ccHHHHHhcCCC---CC-----CHHHHHHHHHHhcHHHHHHhCCCCcc---ccccCC
Q 000789 449 IR----EKIGLVSQEPI--LFA-TSLRENIAYGKE---NA-----TDQEIRTAIELANAAKFIDKLPKGLD---TMAGEH 510 (1283)
Q Consensus 449 ~r----~~i~~v~Q~~~--l~~-~ti~~ni~~~~~---~~-----~~~~~~~~~~~~~~~~~i~~lp~g~~---t~~~~~ 510 (1283)
++ +.|+||+|++. +++ .||.+|+..... .. ...+. ...+.+.++.+ |++ ......
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~~--gL~~~~~~~~~~ 155 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWR-----KRRAIELLHRV--GIKDHKDAMRSF 155 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHH-----HHHHHHHHHHC--CCCChHHHHhCC
Confidence 43 47999999996 333 489999864211 00 00111 11223444444 453 234566
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCC
Q 000789 511 GTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQG 587 (1283)
Q Consensus 511 g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G 587 (1283)
+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 789999999999999999999999999999999999999999999999864 6899999999999976 9999999999
Q ss_pred EEeEecChhHHhcCCCChhHHHH
Q 000789 588 KIVEKGTHDELIKDPEGPYTQLV 610 (1283)
Q Consensus 588 ~i~~~g~~~~l~~~~~~~~~~~~ 610 (1283)
+|++.|+.+++..++...|.+.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~~l 258 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQAL 258 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHHHH
Confidence 99999999999887667776643
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=376.80 Aligned_cols=220 Identities=29% Similarity=0.480 Sum_probs=187.7
Q ss_pred ccEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCcceEEECCccCCCC--C
Q 000789 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD-----PDSGHVLLDNIELPKF--K 1110 (1283)
Q Consensus 1038 g~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~~--~ 1110 (1283)
..|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 36999999999974 359999999999999999999999999999999999986 6899999999998653 4
Q ss_pred hHHHhcceEEEccCCCCChhhHHHHHhcCCCC------------------CCCHHHHHHHHHHhChHHHHHhCCCCcccc
Q 000789 1111 LSWLRQQMGLVSQEPVLFNETIRTNIAYGKQG------------------GATEEEIIAATEASNAHNFISALPHGYETN 1172 (1283)
Q Consensus 1111 ~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~------------------~~sd~ei~~al~~a~l~~~I~~lp~Gldt~ 1172 (1283)
...+|+.++||||++.+|++|++||+.++... ...++++.++++.+++.+ ++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhHH
Confidence 56788999999999999999999999865210 011234555666555533 33344
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCceEEEEecCchHHhh-cCEE-EEE
Q 000789 1173 VGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADII-AVV 1250 (1283)
Q Consensus 1173 vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHrl~ti~~-~D~I-~vl 1250 (1283)
+.....+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 56667799999999999999999999999999999999999999999999998777899999999999866 9997 567
Q ss_pred eCCEEEEecChHHHHhc
Q 000789 1251 KNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1251 ~~G~Ive~Gt~~eLl~~ 1267 (1283)
++|++++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999999764
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=370.40 Aligned_cols=213 Identities=27% Similarity=0.387 Sum_probs=183.8
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCC--------cceEEECCccCCCCCh
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD--------SGHVLLDNIELPKFKL 1111 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~--------~G~I~idG~di~~~~~ 1111 (1283)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999964 35999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHhcceEEEccCCC-CChhhHHHHHhcCCCCC------CC---HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCC
Q 000789 1112 SWLRQQMGLVSQEPV-LFNETIRTNIAYGKQGG------AT---EEEIIAATEASNAHNFISALPHGYETNVGERGVQLS 1181 (1283)
Q Consensus 1112 ~~lR~~i~~V~Qdp~-Lf~gTIreNl~~g~~~~------~s---d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1181 (1283)
..+|+.++||||++. +|..|++||+.++.... .+ ++.+.++++..++ ++.++.....||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA-----------TALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc-----------HhhhcCCcccCC
Confidence 888889999999986 67899999998752110 11 2234455555544 334445566899
Q ss_pred hhHHHHHHHHHHHc---------cCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEE
Q 000789 1182 GGQKQRIAIARAVL---------KNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAV 1249 (1283)
Q Consensus 1182 gGQrQRlaiARAll---------~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~v 1249 (1283)
||||||++|||||+ .+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998753 6899999999999965 999999
Q ss_pred EeCCEEEEecChHHHHh
Q 000789 1250 VKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1250 l~~G~Ive~Gt~~eLl~ 1266 (1283)
|++|++++.|++++++.
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999865
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=362.38 Aligned_cols=202 Identities=35% Similarity=0.533 Sum_probs=170.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCC--CChHHHhcc
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPK--FKLSWLRQQ 1117 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~--~~~~~lR~~ 1117 (1283)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 578999999974 359999999999999999999999999999999999999999999999999853 345667899
Q ss_pred eEEEccCCCCCh-hhHHHHHhcCCC--CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHH
Q 000789 1118 MGLVSQEPVLFN-ETIRTNIAYGKQ--GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAI 1190 (1283)
Q Consensus 1118 i~~V~Qdp~Lf~-gTIreNl~~g~~--~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlai 1190 (1283)
++|+||+|.+|. .|++||+.++.. .+.+. +++.++++..++.+.+ .....+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKA-----------DAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hhCccccCHHHHHHHHH
Confidence 999999999886 699999976421 12222 2344445555544433 33345899999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEE
Q 000789 1191 ARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVI 1255 (1283)
Q Consensus 1191 ARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~I 1255 (1283)
|||++++|++|||||||++||+++.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999875 47899999999999976 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=369.96 Aligned_cols=225 Identities=31% Similarity=0.485 Sum_probs=187.3
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcc-----cCCCCHHH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGID-----IKKLQLKW 448 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~-----~~~~~~~~ 448 (1283)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|++ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999964 369999999999999999999999999999999999999999999999998 77666543
Q ss_pred ----HhcccEEEccCCC--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChH
Q 000789 449 ----IREKIGLVSQEPI--LFA-TSLRENIAYGK---ENATDQEIRTAIELANAAKFIDKLPKGLD-TMAGEHGTQLSGG 517 (1283)
Q Consensus 449 ----~r~~i~~v~Q~~~--l~~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgG 517 (1283)
.++.++||+|++. ++. .|+.+|+.+.. ......+.. ..++++++.+ |++ +..++.+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 343 48899986521 111112221 1235667777 554 4678888999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecC
Q 000789 518 QKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGT 594 (1283)
Q Consensus 518 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~ 594 (1283)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998754 6899999999999975 99999999999999999
Q ss_pred hhHHhcCCCChhHH
Q 000789 595 HDELIKDPEGPYTQ 608 (1283)
Q Consensus 595 ~~~l~~~~~~~~~~ 608 (1283)
++++..++...|.+
T Consensus 236 ~~~~~~~~~~~~~~ 249 (258)
T PRK11701 236 TDQVLDDPQHPYTQ 249 (258)
T ss_pred HHHHhcCCCCHHHH
Confidence 99998664444443
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=371.09 Aligned_cols=220 Identities=30% Similarity=0.489 Sum_probs=185.6
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccCC--CC
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIKK--LQ 445 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~ 445 (1283)
+.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36999999999963 3599999999999999999999999999999999999985 48999999998854 34
Q ss_pred HHHHhcccEEEccCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 000789 446 LKWIREKIGLVSQEPILFATSLRENIAYGKEN---ATD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQ 518 (1283)
Q Consensus 446 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 518 (1283)
...++++++||+|++.+|+.|++||+.++... ..+ +.+.++++.+++.+++. ......+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-------DKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHH
Confidence 55678899999999999999999999875311 111 22344444444433222 23456778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEe-----CCEEeEe
Q 000789 519 KQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVH-----QGKIVEK 592 (1283)
Q Consensus 519 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~-----~G~i~~~ 592 (1283)
|||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999998777899999999999876 99999998 5999999
Q ss_pred cChhHHhcCC
Q 000789 593 GTHDELIKDP 602 (1283)
Q Consensus 593 g~~~~l~~~~ 602 (1283)
|+++++.+.+
T Consensus 236 ~~~~~~~~~~ 245 (259)
T PRK14260 236 GVTTQIFSNP 245 (259)
T ss_pred CCHHHHhcCC
Confidence 9999987653
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=372.95 Aligned_cols=220 Identities=31% Similarity=0.511 Sum_probs=183.8
Q ss_pred cccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEECCcccCC--C
Q 000789 372 EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD-----PDAGEVLIDGIDIKK--L 444 (1283)
Q Consensus 372 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~ 444 (1283)
+..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 345999999999963 369999999999999999999999999999999999997 689999999999864 3
Q ss_pred CHHHHhcccEEEccCCCCCcccHHHHHhcCCCC--CC---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 000789 445 QLKWIREKIGLVSQEPILFATSLRENIAYGKEN--AT---DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519 (1283)
Q Consensus 445 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~---~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 519 (1283)
+...++++++||+|++.+|+.|++||+.++... .. .+++.++++..++.+.+ .....+++.+||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LSgGe~ 186 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV-------KDQLDSSGLDLSGGQQ 186 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh-------HHHHhCCcccCCHHHH
Confidence 455678899999999999988999999875311 11 12233333333322111 2245677789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEE-EEeCCEEeEecChhH
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIA-VVHQGKIVEKGTHDE 597 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~-vl~~G~i~~~g~~~~ 597 (1283)
||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|+|++.|++++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~ 266 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDK 266 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998777899999999999876 99975 579999999999999
Q ss_pred HhcC
Q 000789 598 LIKD 601 (1283)
Q Consensus 598 l~~~ 601 (1283)
+..+
T Consensus 267 ~~~~ 270 (285)
T PRK14254 267 IFEN 270 (285)
T ss_pred HHhC
Confidence 8754
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=375.98 Aligned_cols=225 Identities=29% Similarity=0.462 Sum_probs=185.3
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEECCcccCCC--C
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD-----PDAGEVLIDGIDIKKL--Q 445 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~~--~ 445 (1283)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||+++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 45899999999963 359999999999999999999999999999999999864 4999999999988643 2
Q ss_pred HHHHhcccEEEccCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 000789 446 LKWIREKIGLVSQEPILFATSLRENIAYGKEN--A-TD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQ 518 (1283)
Q Consensus 446 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 518 (1283)
...+|++++||+|++.+|+.|+.||+.++... . +. +++.++++..++.+ ++.......+..|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-------EVSDRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCcc-------chhhHhhCChhhCCHHH
Confidence 34568899999999999988999999986321 1 11 12223333332211 11233456778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhH
Q 000789 519 KQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDE 597 (1283)
Q Consensus 519 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~ 597 (1283)
|||++|||||+.+|++|||||||++||+++.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998777899999999999875 99999999999999999999
Q ss_pred HhcCCCChhH
Q 000789 598 LIKDPEGPYT 607 (1283)
Q Consensus 598 l~~~~~~~~~ 607 (1283)
+.+++...+.
T Consensus 268 ~~~~~~~~~~ 277 (286)
T PRK14275 268 LFTNPKDRMT 277 (286)
T ss_pred HHhCCCcHHH
Confidence 9865443333
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=371.84 Aligned_cols=214 Identities=27% Similarity=0.453 Sum_probs=184.7
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcc
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREK 452 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 452 (1283)
..|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999973 359999999999999999999999999999999999999999999999999988887778889
Q ss_pred cEEEccCCCCCc-ccHHHHHhcCC-CC------CCH---HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000789 453 IGLVSQEPILFA-TSLRENIAYGK-EN------ATD---QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQR 521 (1283)
Q Consensus 453 i~~v~Q~~~l~~-~ti~~ni~~~~-~~------~~~---~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqr 521 (1283)
++|++|++.+|. .|++||+.++. +. ..+ +++.++++.. |++......+.+||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQAT-----------GITHLADQSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc-----------CCHHHhcCCcccCChHHHHH
Confidence 999999998875 59999998753 11 011 1233333333 44444556678999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 522 IAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 522 iaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
++||||++++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998754 6899999999998865 999999999999999999887
Q ss_pred hc
Q 000789 599 IK 600 (1283)
Q Consensus 599 ~~ 600 (1283)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 64
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=362.65 Aligned_cols=206 Identities=33% Similarity=0.533 Sum_probs=171.6
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCH---HHHhc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL---KWIRE 451 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r~ 451 (1283)
|+++|++++|++. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999642 359999999999999999999999999999999999999999999999999877654 34678
Q ss_pred ccEEEccCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 000789 452 KIGLVSQEPILFAT-SLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAI 528 (1283)
Q Consensus 452 ~i~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal 528 (1283)
.++|++|++.+|+. |++||+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||++|||||
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK-----RVPAALELV--GLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 89999999999985 99999987532 112221111 112333333 444444555679999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEE
Q 000789 529 LKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKI 589 (1283)
Q Consensus 529 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i 589 (1283)
+.+|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999874 47899999999999986 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=363.50 Aligned_cols=202 Identities=28% Similarity=0.497 Sum_probs=166.4
Q ss_pred EEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccEE
Q 000789 376 ELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGL 455 (1283)
Q Consensus 376 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 455 (1283)
+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 35999999999999999999999999999999999999999999999998764 46778999
Q ss_pred EccCCCC---CcccHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000789 456 VSQEPIL---FATSLRENIAYGKENA------TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526 (1283)
Q Consensus 456 v~Q~~~l---~~~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiAR 526 (1283)
|+|++.+ ++.|++||+.++.... ..++.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 145 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADK-----AKVDEALERV--GLSELADRQIGELSGGQQQRVLLAR 145 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHH-----HHHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHH
Confidence 9999976 5679999998864311 011110 1122333333 4444445566799999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEec
Q 000789 527 AILKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKG 593 (1283)
Q Consensus 527 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 593 (1283)
||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999875 56899999999999876 9999999986 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=385.96 Aligned_cols=235 Identities=33% Similarity=0.534 Sum_probs=190.6
Q ss_pred ccEEEEEEEEECCCC--------CCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCccc--C
Q 000789 373 GEIELRDVYFRYPAR--------PEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDI--K 442 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~--------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~--~ 442 (1283)
.-++++|+++.|..+ ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.|. +
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 458899999999742 234689999999999999999999999999999999999999999999999872 3
Q ss_pred CCCHHHHhcccEEEccCCC--CCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHH
Q 000789 443 KLQLKWIREKIGLVSQEPI--LFA-TSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDT-MAGEHGTQLSGGQ 518 (1283)
Q Consensus 443 ~~~~~~~r~~i~~v~Q~~~--l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq 518 (1283)
.-+....|+++-+|+|||+ |-+ .||.++|.-......... .+.+.+.+.+.++.. |+.. .....+.+|||||
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~--~~~~~~rv~~ll~~V--gL~~~~l~ryP~elSGGQ 434 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGS--GAERRARVAELLELV--GLPPEFLDRYPHELSGGQ 434 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccc--hHHHHHHHHHHHHHc--CCCHHHHhcCchhcCcch
Confidence 2234567789999999996 333 499999975422110000 111111222333332 4444 4667778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecCh
Q 000789 519 KQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTH 595 (1283)
Q Consensus 519 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~ 595 (1283)
||||||||||..+|+++|+|||||+||+-+...+.+.|+++.+ +.|.|+||||++.++. ||||+||++|+|||.|+.
T Consensus 435 rQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~ 514 (539)
T COG1123 435 RQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPT 514 (539)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999999865 5899999999999998 999999999999999999
Q ss_pred hHHhcCCCChhHHHHH
Q 000789 596 DELIKDPEGPYTQLVR 611 (1283)
Q Consensus 596 ~~l~~~~~~~~~~~~~ 611 (1283)
+++++++...|.+...
T Consensus 515 ~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 515 EKVFENPQHPYTRKLL 530 (539)
T ss_pred HHHhcCCCChHHHHHH
Confidence 9999998888877543
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=359.08 Aligned_cols=203 Identities=33% Similarity=0.541 Sum_probs=177.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
++++||+++|+. +++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 468999999962 468999999999999999999999999999999999999999999999987643 4678899
Q ss_pred EEccCCCCCh-hhHHHHHhcCCCCC-----CCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1120 LVSQEPVLFN-ETIRTNIAYGKQGG-----ATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qdp~Lf~-gTIreNl~~g~~~~-----~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
||||+|.+|. .|++||+.++.... ..++++.++++..++.+...+.|. +||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc-----------cCCHHHHHHHHHHHH
Confidence 9999999987 59999997541111 124567778888888776665553 799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecC
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt 1260 (1283)
++++|+|+||||||++||+++...+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999998753 7899999999999875 99999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=359.59 Aligned_cols=210 Identities=29% Similarity=0.473 Sum_probs=185.7
Q ss_pred EEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCH----HHHhc
Q 000789 376 ELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQL----KWIRE 451 (1283)
Q Consensus 376 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~----~~~r~ 451 (1283)
.+.|+.|+|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 469999999999999999999999999999999999999999999999998866542 23567
Q ss_pred ccEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 452 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
.++|++|++.+|+.|++||+.++.+ ...++..++++..++.+++..+|.|+++.++....+||||||||++||||++.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999998999999998754 345566778888888888899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH--HHHHHcC-CCeEEEEecCchhhhccCEEEEEeCCE
Q 000789 532 PKILLLDEATSALDAESERIVQD--ALVKIMT-SRTTVVVAHRLTTIRNADLIAVVHQGK 588 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~--~l~~~~~-~~t~i~itH~l~~~~~~d~i~vl~~G~ 588 (1283)
|++|||||||++||+.+...+.+ .++.+.+ ++|+|++||+++.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998887 4555433 689999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=379.58 Aligned_cols=201 Identities=23% Similarity=0.400 Sum_probs=172.9
Q ss_pred cccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceEEEccCCCCChh-hHH
Q 000789 1055 VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIR 1133 (1283)
Q Consensus 1055 ~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~Lf~g-TIr 1133 (1283)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|+||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 369999999999999999999999999999999999999999999999999876 345678899999999999865 999
Q ss_pred HHHhcCCC-CCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccC
Q 000789 1134 TNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATS 1208 (1283)
Q Consensus 1134 eNl~~g~~-~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTS 1208 (1283)
||+.+... ...+ ++++.++++..++.+.. ++ ...+||||||||++|||||+++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-------DR----PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------CC----chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99976311 1122 23455566666654332 22 335799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1209 ALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1209 aLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
+||+.+.+.+++.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999875 47899999999999976 999999999999999999999764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=367.46 Aligned_cols=223 Identities=30% Similarity=0.529 Sum_probs=187.8
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCceEEECCcccCCC--CH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD-----PDAGEVLIDGIDIKKL--QL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~~--~~ 446 (1283)
.++++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||+++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 359999999999999999999999999999999999864 4899999999998653 35
Q ss_pred HHHhcccEEEccCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 000789 447 KWIREKIGLVSQEPILFATSLRENIAYGKEN--A-TD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 519 (1283)
..++++++|+||++.+|+.|++||+.++... . +. +++.++++.+++.+++. ...++.+..||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHH
Confidence 5678899999999999999999999875321 1 11 22344455555444332 224566789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778899999999999876 999999999999999999999
Q ss_pred hcCCCChh
Q 000789 599 IKDPEGPY 606 (1283)
Q Consensus 599 ~~~~~~~~ 606 (1283)
...+.+.+
T Consensus 233 ~~~~~~~~ 240 (250)
T PRK14266 233 FINPKDKR 240 (250)
T ss_pred HhCCCChH
Confidence 76544443
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=369.60 Aligned_cols=218 Identities=31% Similarity=0.495 Sum_probs=182.1
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccCC--CCH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIKK--LQL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~ 446 (1283)
.++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||+++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999964 3599999999999999999999999999999999999974 79999999998853 345
Q ss_pred HHHhcccEEEccCCCCCc-ccHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 000789 447 KWIREKIGLVSQEPILFA-TSLRENIAYGKEN---ATDQ----EIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQ 518 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 518 (1283)
..+|+.++|++|++.+|. .|++||+.++... .+.+ .+.++++..++.++ +.......+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNE-------VKDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhhHhhCCcccCCHHH
Confidence 567889999999999987 4999999875311 1111 22233333332211 1234566778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEe------CCEEeE
Q 000789 519 KQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVH------QGKIVE 591 (1283)
Q Consensus 519 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~------~G~i~~ 591 (1283)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 99999999999999999999999999999999999999998767899999999999865 99999997 899999
Q ss_pred ecChhHHhcC
Q 000789 592 KGTHDELIKD 601 (1283)
Q Consensus 592 ~g~~~~l~~~ 601 (1283)
.|++++++..
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999998765
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=369.92 Aligned_cols=225 Identities=29% Similarity=0.477 Sum_probs=188.5
Q ss_pred cccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccC----
Q 000789 372 EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIK---- 442 (1283)
Q Consensus 372 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~---- 442 (1283)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 457999999999973 3699999999999999999999999999999999999875 7999999998874
Q ss_pred CCCHHHHhcccEEEccCCCCCcccHHHHHhcCCC--CCC-----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 000789 443 KLQLKWIREKIGLVSQEPILFATSLRENIAYGKE--NAT-----DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLS 515 (1283)
Q Consensus 443 ~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~~-----~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 515 (1283)
..+...+++.++|++|++.+|..|++||+.++.. ... ++++.++++.+++.+ ++.+..++....||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCC
Confidence 2344567889999999999999999999987531 111 123344444433322 33345667788999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecC
Q 000789 516 GGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGT 594 (1283)
Q Consensus 516 gGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~ 594 (1283)
||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999998777899999999999865 99999999999999999
Q ss_pred hhHHhcCCCChh
Q 000789 595 HDELIKDPEGPY 606 (1283)
Q Consensus 595 ~~~l~~~~~~~~ 606 (1283)
++++..++...|
T Consensus 244 ~~~~~~~~~~~~ 255 (265)
T PRK14252 244 TDTIFIKPKNKQ 255 (265)
T ss_pred HHHHHhCCCCHH
Confidence 999876533333
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=372.19 Aligned_cols=218 Identities=33% Similarity=0.573 Sum_probs=182.7
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCC--CCHHHHhcc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKK--LQLKWIREK 452 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 452 (1283)
|+++||+++|++ ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999963 2359999999999999999999999999999999999999999999999999852 234467889
Q ss_pred cEEEccCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 000789 453 IGLVSQEP--ILFATSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAI 528 (1283)
Q Consensus 453 i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal 528 (1283)
|+|++|++ .+|+.|+.||+.++... .+.++..+ .+.+.++.+ |++......+.+||||||||++|||||
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK-----RVKEALKAV--GMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999997 47888999999875321 22222211 112334444 454444556779999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 529 LKNPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 529 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999998854 7899999999999875 999999999999999999998754
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=363.32 Aligned_cols=212 Identities=28% Similarity=0.437 Sum_probs=175.1
Q ss_pred cEEEEEEEEECCCCCC-CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHH---H
Q 000789 374 EIELRDVYFRYPARPE-VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW---I 449 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~ 449 (1283)
.|+++|++++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974221 25899999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hcccEEEccCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 000789 450 -REKIGLVSQEPILFAT-SLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIA 525 (1283)
Q Consensus 450 -r~~i~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiA 525 (1283)
++.++|++|++.+|.. |++||+.++.. .....+. ...+.+.++.+ |++.........||||||||++||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS-----RNGAKALLEQL--GLGKRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHH
Confidence 3579999999999875 99999986421 1111111 11122344444 444444555678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEeEe
Q 000789 526 RAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRNADLIAVVHQGKIVEK 592 (1283)
Q Consensus 526 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~ 592 (1283)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999998753 6899999999999888999999999999864
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=368.42 Aligned_cols=225 Identities=32% Similarity=0.489 Sum_probs=184.0
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC-----CceEEECCcccCC--CCH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD-----AGEVLIDGIDIKK--LQL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~--~~~ 446 (1283)
-++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 36999999999999999999999999999999999999874 8999999999864 344
Q ss_pred HHHhcccEEEccCCCCCcc-cHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHHhC--CCCccccccCCCCCCChHHHH
Q 000789 447 KWIREKIGLVSQEPILFAT-SLRENIAYGKEN--A-TDQEIRTAIELANAAKFIDKL--PKGLDTMAGEHGTQLSGGQKQ 520 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l--p~g~~t~~~~~g~~LSgGqkq 520 (1283)
..+|+.++|++|++.+|.. |+.||+.++... . .+++..+.+. +.+..+ ..++.......+.+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE-----RSLRGAALWDEVKDRLKTPATGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHHHcCcchhhhhhhcCCcccCCHHHHH
Confidence 5678899999999999885 999999865321 1 2222222221 111111 111222334556789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHh
Q 000789 521 RIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELI 599 (1283)
Q Consensus 521 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 599 (1283)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++++
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999999886 9999999999999999999998
Q ss_pred cCCCChh
Q 000789 600 KDPEGPY 606 (1283)
Q Consensus 600 ~~~~~~~ 606 (1283)
.++...+
T Consensus 236 ~~~~~~~ 242 (252)
T PRK14272 236 TNPRDER 242 (252)
T ss_pred hCcCcHH
Confidence 7644444
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=346.45 Aligned_cols=221 Identities=32% Similarity=0.536 Sum_probs=193.5
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHH-hccc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWI-REKI 453 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 453 (1283)
+++++++++|++ ..+++||||++++||+++|+|||||||||++|+|+|+|+|++|+|.++|+||..+++... |..|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 678999999974 469999999999999999999999999999999999999999999999999999997765 5679
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000789 454 GLVSQEPILFAT-SLRENIAYGKENA-----------TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQR 521 (1283)
Q Consensus 454 ~~v~Q~~~l~~~-ti~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqr 521 (1283)
+--||.+.+|++ ||.||+..+.... ...+..++.+ .+.+.++.+ |++....+...+||+||+.|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e--~A~~~Le~v--gL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE--RARELLEFV--GLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHH--HHHHHHHHc--CCchhhcchhhcCChhHhHH
Confidence 999999999987 9999999863211 0011122222 234566666 89988999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 522 IAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 522 iaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
+.|||||+.+|++|+||||.++|.+.....+.+.|+++.+ +.|+++|.||++.+.. ||||+||+.|+++.+|+|+|.
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 9999999999999999999999999999999999999985 3899999999999976 999999999999999999999
Q ss_pred hcCC
Q 000789 599 IKDP 602 (1283)
Q Consensus 599 ~~~~ 602 (1283)
.++|
T Consensus 238 ~~dp 241 (250)
T COG0411 238 RNNP 241 (250)
T ss_pred hcCH
Confidence 8764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=368.56 Aligned_cols=222 Identities=28% Similarity=0.419 Sum_probs=184.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCC---cceEEECCccCCCC-----C
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD---SGHVLLDNIELPKF-----K 1110 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~---~G~I~idG~di~~~-----~ 1110 (1283)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999974 35999999999999999999999999999999999999986 49999999998653 2
Q ss_pred hHHHhcceEEEccCCCCCh-hhHHHHHhcCCCC-------------CCCHHHHHHHHHHhChHHHHHhCCCCcccccCCC
Q 000789 1111 LSWLRQQMGLVSQEPVLFN-ETIRTNIAYGKQG-------------GATEEEIIAATEASNAHNFISALPHGYETNVGER 1176 (1283)
Q Consensus 1111 ~~~lR~~i~~V~Qdp~Lf~-gTIreNl~~g~~~-------------~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~ 1176 (1283)
...+|++++|+||++.+|. .|++||+.++... ...++++.++++..++.+.+. ..
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-----------QR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-----------CC
Confidence 4567889999999998887 5999999865211 011234556666666654433 33
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCC
Q 000789 1177 GVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNG 1253 (1283)
Q Consensus 1177 G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G 1253 (1283)
...||||||||++||||++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 457999999999999999999999999999999999999999999998753 7899999999998754 9999999999
Q ss_pred EEEEecChHHHHhccCchhHHHHH
Q 000789 1254 VIAEQGSHDALMKITDGAYASLVA 1277 (1283)
Q Consensus 1254 ~Ive~Gt~~eLl~~~~g~y~~L~~ 1277 (1283)
++++.|+++++ . .....+++.
T Consensus 230 ~i~~~g~~~~~-~--~~~~~~~~~ 250 (262)
T PRK09984 230 HVFYDGSSQQF-D--NERFDHLYR 250 (262)
T ss_pred EEEEeCCHHHh-c--cHHHHHHHh
Confidence 99999999997 2 234455543
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=383.61 Aligned_cols=212 Identities=28% Similarity=0.481 Sum_probs=181.2
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCC----CHHHHh
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL----QLKWIR 450 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~~r 450 (1283)
|++ |++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +....+
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999963 2 23 89999999999999999999999999999999999999999999988643 234467
Q ss_pred cccEEEccCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHh
Q 000789 451 EKIGLVSQEPILFA-TSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAIL 529 (1283)
Q Consensus 451 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~ 529 (1283)
++++||+|++.+|+ .|++||+.++.+....+++.+.++ .+ |++........+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~---------~~--gl~~~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVA---------LL--GIEPLLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHH---------Hc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 89999999999997 499999998754333333444444 43 5555556667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCC
Q 000789 530 KNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPE 603 (1283)
Q Consensus 530 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~ 603 (1283)
.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 99999999999999999999999999998754 6899999999998866 99999999999999999999987753
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=369.51 Aligned_cols=221 Identities=28% Similarity=0.454 Sum_probs=184.3
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999963 36999999999999999999999999999999999999999999999999998888878888899
Q ss_pred EEccCCCC-CcccHHHHHhcCCCCCCHH-HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000789 455 LVSQEPIL-FATSLRENIAYGKENATDQ-EIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNP 532 (1283)
Q Consensus 455 ~v~Q~~~l-~~~ti~~ni~~~~~~~~~~-~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~ 532 (1283)
|++|++.+ +..|++||+.++....... ..........+.+.++.+ |+.......+..||||||||++||||++.+|
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999864 4579999998863211000 000000111233444544 5555556677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhc
Q 000789 533 KILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600 (1283)
Q Consensus 533 ~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 600 (1283)
+++||||||++||+.+...+.+.|+++.+ +.|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999998754 6899999999999965 99999999999999999988754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=373.94 Aligned_cols=214 Identities=34% Similarity=0.596 Sum_probs=184.5
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhccc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 453 (1283)
.++++||+++|+. ++.+|+||||+|++|+++|++||||||||||+|+|+|+..|++|+|.++|.+...- ....+++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999973 24699999999999999999999999999999999999999999999999998765 66788899
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCC-----C-CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000789 454 GLVSQEPILFAT-SLRENIAYGKE-----N-ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526 (1283)
Q Consensus 454 ~~v~Q~~~l~~~-ti~~ni~~~~~-----~-~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiAR 526 (1283)
|||||+|.+++. |++||+.|... . ..++++.+.++.. |++..-..+..+||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELF-----------GLEDKANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHc-----------CCchhhCcchhhcCHHHHHHHHHHH
Confidence 999999998876 99999987421 1 1123444455444 4433224556789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-CeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 527 AILKNPKILLLDEATSALDAESERIVQDALVKIMT-S-RTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 527 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~-~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
||+.+|++|||||||++|||.+...+.+.|+++.+ + +|++++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999875 4 699999999999987 999999999999999999987654
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=360.54 Aligned_cols=205 Identities=26% Similarity=0.511 Sum_probs=174.8
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++|+++.|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||+++.. ..+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999963 369999999999999999999999999999999999999999999999988753 4577899
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 455 LVSQEPILFAT-SLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 455 ~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
|++|++.++.. |++||+.++.. .....+.. ..+.++++.+ |++........+||||||||++|||||+.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 99999999875 99999987431 11111111 1234556665 666666777889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEec
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKG 593 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 593 (1283)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999875 46899999999999865 9999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=367.24 Aligned_cols=215 Identities=22% Similarity=0.339 Sum_probs=176.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc--CCCCcceEEECCccCCCCChHHH-hc
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERF--YDPDSGHVLLDNIELPKFKLSWL-RQ 1116 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl--~~~~~G~I~idG~di~~~~~~~l-R~ 1116 (1283)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.+||.++...+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999973 3599999999999999999999999999999999999 47999999999999988776554 45
Q ss_pred ceEEEccCCCCChh-hHHHHHhcCCC--CC------CC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChh
Q 000789 1117 QMGLVSQEPVLFNE-TIRTNIAYGKQ--GG------AT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGG 1183 (1283)
Q Consensus 1117 ~i~~V~Qdp~Lf~g-TIreNl~~g~~--~~------~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1183 (1283)
.++||||+|.+|.+ |++||+.+... .. .+ ++++.++++..++.+.. .+..+. ..||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G 148 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGG 148 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHH
Confidence 69999999998875 89999865311 00 11 12344444444442110 122221 259999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHhh--cCEEEEEeCCEEEEecC
Q 000789 1184 QKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN--ADIIAVVKNGVIAEQGS 1260 (1283)
Q Consensus 1184 QrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~--~D~I~vl~~G~Ive~Gt 1260 (1283)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999875 47899999999999976 79999999999999999
Q ss_pred hHHHHh
Q 000789 1261 HDALMK 1266 (1283)
Q Consensus 1261 ~~eLl~ 1266 (1283)
++++..
T Consensus 229 ~~~~~~ 234 (243)
T TIGR01978 229 VELAKE 234 (243)
T ss_pred HHHhcc
Confidence 986654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=359.01 Aligned_cols=208 Identities=30% Similarity=0.486 Sum_probs=173.7
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHH---HHhc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLK---WIRE 451 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r~ 451 (1283)
|+++||+++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999876543 3678
Q ss_pred ccEEEccCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 000789 452 KIGLVSQEPILF-ATSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAI 528 (1283)
Q Consensus 452 ~i~~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal 528 (1283)
.++|++|++.++ ..|++||+.++.. ..+.++..+. +.+.++.+ |++........+||||||||++||||+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR-----VSAALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 999999999875 5699999987531 1223222221 12233333 444445566689999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeE
Q 000789 529 LKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVE 591 (1283)
Q Consensus 529 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~ 591 (1283)
+.+|++|||||||++||+.+.+.+.+.|.++. ++.|+|++||+++.+.. ||+|++|++|+++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999875 36899999999999976 99999999999864
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=367.59 Aligned_cols=220 Identities=30% Similarity=0.424 Sum_probs=186.7
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccCCC--CH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIKKL--QL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 446 (1283)
.+.++++++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999963 3699999999999999999999999999999999999987 799999999998643 34
Q ss_pred HHHhcccEEEccCCCCCcccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 000789 447 KWIREKIGLVSQEPILFATSLRENIAYGKEN-----ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQR 521 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqr 521 (1283)
..+++.++|++|++.+|..|+.||+.++... ...+++.++++..++.+.+. ...++.+.+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-------DKLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHHH
Confidence 4667889999999999989999999986421 11234455555555433322 23456778999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEe--------CCEEeEe
Q 000789 522 IAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVH--------QGKIVEK 592 (1283)
Q Consensus 522 iaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~--------~G~i~~~ 592 (1283)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999998777899999999999865 99999996 8999999
Q ss_pred cChhHHhcCCC
Q 000789 593 GTHDELIKDPE 603 (1283)
Q Consensus 593 g~~~~l~~~~~ 603 (1283)
|+++++++++.
T Consensus 238 g~~~~~~~~~~ 248 (261)
T PRK14263 238 GPTAQIFQNPR 248 (261)
T ss_pred CCHHHHHhCCC
Confidence 99999986533
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=357.92 Aligned_cols=201 Identities=30% Similarity=0.536 Sum_probs=170.3
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5789999999632 2 39999999999999999999999999999999999999999999999876654 357899
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC-CC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000789 455 LVSQEPILFAT-SLRENIAYGKE-NA-----TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARA 527 (1283)
Q Consensus 455 ~v~Q~~~l~~~-ti~~ni~~~~~-~~-----~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARa 527 (1283)
|++|++.+|.+ |++||+.++.. .. .++++.++++..++.++ ......+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGL-----------EKRLPGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHH-----------HhCCcccCCHHHHHHHHHHHH
Confidence 99999999975 99999987642 11 12234444544444433 344456899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEec
Q 000789 528 ILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKG 593 (1283)
Q Consensus 528 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 593 (1283)
++.+|++|||||||++||+++...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998753 6899999999999976 9999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=339.06 Aligned_cols=220 Identities=26% Similarity=0.424 Sum_probs=188.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHH-Hhcc
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW-LRQQ 1117 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~-lR~~ 1117 (1283)
-++++||+..|.. ..+|++|||++++||+++++||||+||||++++|+|+.+|.+|+|.++|.||+..+++. .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999974 46999999999999999999999999999999999999999999999999999998766 4778
Q ss_pred eEEEccCCCCC-hhhHHHHHhcCCCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHHcc
Q 000789 1118 MGLVSQEPVLF-NETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLK 1196 (1283)
Q Consensus 1118 i~~V~Qdp~Lf-~gTIreNl~~g~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAll~ 1196 (1283)
|+||||...+| +.||.|||.+|... ..+++-++ ..+++..+-+|. |.......+.+|||||+|-+||||||+.
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~-~~~~~~~~----~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYA-RRDKEAQE----RDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhc-cccccccc----ccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 99999999999 56999999876321 11111111 112233334553 5566677788999999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1197 NPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1197 ~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
+|++|+|||||.+|-|.--+.|.++|+++.+ +-||+.|-++...... +||.+||++|+|+.+|+.+||.++
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999874 4599999999998765 999999999999999999999986
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=363.88 Aligned_cols=215 Identities=38% Similarity=0.562 Sum_probs=181.3
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++|++++|++ .++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceE
Confidence 468999999964 3699999999999999999999999999999999999999999999999998766542 67899
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 455 LVSQEPILFAT-SLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 455 ~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
||+|++.+|.+ |++||+.++... .+.....+ .+++.++.+ |++........+||||||||++|||||+.+
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKE-----RVAEALDLV--QLEGYANRKPSQLSGGQQQRVAIARALVNE 148 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999975 999999875321 11111111 122333333 555555566679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999998764 7899999999999865 999999999999999999888754
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=367.41 Aligned_cols=221 Identities=31% Similarity=0.484 Sum_probs=186.0
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCceEEECCcccCC--CC
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP-----DAGEVLIDGIDIKK--LQ 445 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~ 445 (1283)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999963 3599999999999999999999999999999999999863 69999999999864 33
Q ss_pred HHHHhcccEEEccCCCCCcccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 000789 446 LKWIREKIGLVSQEPILFATSLRENIAYGKENA-----TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQ 520 (1283)
Q Consensus 446 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkq 520 (1283)
...+|++|+|++|++.+|+.|+.||+.++.... .++.+.++++.+++.+++ .......+..|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-------KDKLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-------HHHhcCCcccCCHHHHH
Confidence 446788999999999999889999998863211 122334444444443322 22345667899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEe---------CCEEe
Q 000789 521 RIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVH---------QGKIV 590 (1283)
Q Consensus 521 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~---------~G~i~ 590 (1283)
|++|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999998777899999999999865 99999998 89999
Q ss_pred EecChhHHhcCCC
Q 000789 591 EKGTHDELIKDPE 603 (1283)
Q Consensus 591 ~~g~~~~l~~~~~ 603 (1283)
+.|+.+++...+.
T Consensus 249 ~~g~~~~~~~~~~ 261 (274)
T PRK14265 249 EFSPTEQMFGSPQ 261 (274)
T ss_pred EeCCHHHHHhCCC
Confidence 9999999976543
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=361.05 Aligned_cols=209 Identities=30% Similarity=0.488 Sum_probs=178.1
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++||+++|++ . ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 689999999963 2 2499999999999999999999999999999999999999999999998765442 56899
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC-CC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000789 455 LVSQEPILFAT-SLRENIAYGKE-NA-----TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARA 527 (1283)
Q Consensus 455 ~v~Q~~~l~~~-ti~~ni~~~~~-~~-----~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARa 527 (1283)
|++|++.+|.+ |+.||+.++.. .. .++++.++++..++.++ +......||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDL-----------LARLPGQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHH-----------HhCCcccCCHHHHHHHHHHHH
Confidence 99999999985 99999987531 11 12234445555544444 444456899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 528 ILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 528 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
++++|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999998753 6899999999999875 999999999999999999998764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=368.41 Aligned_cols=221 Identities=29% Similarity=0.490 Sum_probs=185.3
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC-----CceEEECCcccCC--CC
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD-----AGEVLIDGIDIKK--LQ 445 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~--~~ 445 (1283)
+.|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 36999999999963 35899999999999999999999999999999999999985 8999999998853 34
Q ss_pred HHHHhcccEEEccCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 000789 446 LKWIREKIGLVSQEPILFATSLRENIAYGKEN--A-TD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQ 518 (1283)
Q Consensus 446 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 518 (1283)
...+++.++|++|++.+|+.|++||+.++... . +. +.+.++++..++.+++ +...++.+.+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI-------KHKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHH
Confidence 45678899999999999999999999875211 1 11 2233344444333222 234566778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeC-----CEEe
Q 000789 519 KQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRN-ADLIAVVHQ-----GKIV 590 (1283)
Q Consensus 519 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~-----G~i~ 590 (1283)
|||++|||||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999999864 37899999999999875 999999999 9999
Q ss_pred EecChhHHhcCCC
Q 000789 591 EKGTHDELIKDPE 603 (1283)
Q Consensus 591 ~~g~~~~l~~~~~ 603 (1283)
+.|+++++...+.
T Consensus 236 ~~~~~~~~~~~~~ 248 (261)
T PRK14258 236 EFGLTKKIFNSPH 248 (261)
T ss_pred EeCCHHHHHhCCC
Confidence 9999999976543
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=366.02 Aligned_cols=227 Identities=30% Similarity=0.407 Sum_probs=185.7
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCC----CcceEEECCccCCCCChHHH
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDP----DSGHVLLDNIELPKFKLSWL 1114 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~----~~G~I~idG~di~~~~~~~l 1114 (1283)
.|+++||+++| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 2 2599999999999999999999999999999999999999 999999999998632 223
Q ss_pred hcceEEEccCCC-CCh--hhHHHHHhcC---CCCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHH
Q 000789 1115 RQQMGLVSQEPV-LFN--ETIRTNIAYG---KQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRI 1188 (1283)
Q Consensus 1115 R~~i~~V~Qdp~-Lf~--gTIreNl~~g---~~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1188 (1283)
++.++||||++. .|. .|+.+|+.+. ......++++.++++..++.++ ++.++.....||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 343 5888886431 0112344567777777766432 1233455568999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHH
Q 000789 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1189 aiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1265 (1283)
+|||||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999999865 9999999999999999999998
Q ss_pred hccCc-hhHHHHHHh
Q 000789 1266 KITDG-AYASLVALH 1279 (1283)
Q Consensus 1266 ~~~~g-~y~~L~~~~ 1279 (1283)
+.+.. .++.++..+
T Consensus 230 ~~~~~~~~~~~~~~~ 244 (254)
T PRK10418 230 NAPKHAVTRSLVSAH 244 (254)
T ss_pred hCCCCHHHHHHHHhh
Confidence 75444 344455443
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=368.47 Aligned_cols=221 Identities=24% Similarity=0.366 Sum_probs=185.8
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC--------CceEEECCcccCCCCH
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD--------AGEVLIDGIDIKKLQL 446 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~--------~G~i~~~g~~~~~~~~ 446 (1283)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999963 36999999999999999999999999999999999999998 9999999999988877
Q ss_pred HHHhcccEEEccCCC-CCcccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 000789 447 KWIREKIGLVSQEPI-LFATSLRENIAYGKENA-TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAI 524 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~-l~~~ti~~ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriai 524 (1283)
..+++.++|++|++. +|..|++||+.++.... .............+.+.++.+ |+++..+....+||||||||++|
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA--GATALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHH
Confidence 778888999999986 56789999998863211 000000000111223445555 77777788889999999999999
Q ss_pred HHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEe
Q 000789 525 ARAIL---------KNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEK 592 (1283)
Q Consensus 525 ARal~---------~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~ 592 (1283)
||||+ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|+|++.
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999 59999999999999999999999999998754 6899999999999865 999999999999999
Q ss_pred cChhHHhc
Q 000789 593 GTHDELIK 600 (1283)
Q Consensus 593 g~~~~l~~ 600 (1283)
|++++++.
T Consensus 237 g~~~~~~~ 244 (272)
T PRK13547 237 GAPADVLT 244 (272)
T ss_pred cCHHHHcC
Confidence 99988864
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=345.73 Aligned_cols=172 Identities=40% Similarity=0.697 Sum_probs=161.4
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...++++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999742 246999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000789 455 LVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKI 534 (1283)
Q Consensus 455 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~i 534 (1283)
|++|++.+|+.|++||+ ||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhccCEEEEEeCCEE
Q 000789 535 LLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRNADLIAVVHQGKI 589 (1283)
Q Consensus 535 lllDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~~d~i~vl~~G~i 589 (1283)
|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999999998754 6899999999999888999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=358.15 Aligned_cols=205 Identities=36% Similarity=0.585 Sum_probs=174.3
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCC--CCHHHHhcc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKK--LQLKWIREK 452 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 452 (1283)
|+++||+++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999964 359999999999999999999999999999999999999999999999998853 344567889
Q ss_pred cEEEccCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 000789 453 IGLVSQEPILFA-TSLRENIAYGKE---NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAI 528 (1283)
Q Consensus 453 i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal 528 (1283)
++|++|++.+|. .|++||+.++.. ..+.++..+ .+.+.++.+ |++..+.....+||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999887 599999987532 122222111 123445555 666666777789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEE
Q 000789 529 LKNPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN-ADLIAVVHQGKI 589 (1283)
Q Consensus 529 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i 589 (1283)
+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999998864 6899999999999975 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=362.28 Aligned_cols=215 Identities=36% Similarity=0.585 Sum_probs=182.8
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
|+++|++++|++ +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 478999999974 369999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 455 LVSQEPILFAT-SLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 455 ~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
|+||++.+|++ |+.||+.++.+. .+..+.. ..+.+.++.+ |+.........+||||||||++|||||+++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999975 999999876431 1111111 1223455555 444445556679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|+++||||||++||+++++.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999998754 6899999999999866 999999999999999999998754
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=368.08 Aligned_cols=222 Identities=25% Similarity=0.463 Sum_probs=181.0
Q ss_pred cEEEEEEEEECCCC------CCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHH
Q 000789 374 EIELRDVYFRYPAR------PEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLK 447 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~ 447 (1283)
.|+++||+++|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124699999999999999999999999999999999999999999999999998765555
Q ss_pred HHhcccEEEccCCC--CCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHH
Q 000789 448 WIREKIGLVSQEPI--LFAT-SLRENIAYGKE---NATDQEIRTAIELANAAKFIDKLPKGLD-TMAGEHGTQLSGGQKQ 520 (1283)
Q Consensus 448 ~~r~~i~~v~Q~~~--l~~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqkq 520 (1283)
..++.++||+|++. +++. |+.+|+.++.. .....+..+ .+.+.++.+ |++ ........+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G~~q 156 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREK-----QIIETLRQV--GLLPDHASYYPHMLAPGQKQ 156 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CCChHHHhcCchhcCHHHHH
Confidence 66678999999985 4443 89999875321 111111111 122333333 442 2234455789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhH
Q 000789 521 RIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDE 597 (1283)
Q Consensus 521 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~ 597 (1283)
|++|||||+.+|+||||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 157 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 236 (267)
T PRK15112 157 RLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTAD 236 (267)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999998753 6899999999999986 99999999999999999999
Q ss_pred HhcCC
Q 000789 598 LIKDP 602 (1283)
Q Consensus 598 l~~~~ 602 (1283)
+...+
T Consensus 237 ~~~~~ 241 (267)
T PRK15112 237 VLASP 241 (267)
T ss_pred HhcCC
Confidence 98753
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=335.03 Aligned_cols=222 Identities=25% Similarity=0.469 Sum_probs=193.2
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHH-Hhcc
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW-IREK 452 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 452 (1283)
.+..+|+.++|.. ++|++||||++++||+|++.||||+||||.+.++.|+.+|++|+|.+||.|++.++... -|-.
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 5788999999964 46999999999999999999999999999999999999999999999999999999765 4568
Q ss_pred cEEEccCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcC
Q 000789 453 IGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 453 i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 531 (1283)
|||+||||.+|.+ ||+|||..-.+. ...+...+.+...+++.++.+ ++...-...+.+||||||+|+.|||||..+
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~-~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEI-REKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhh-hhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcC
Confidence 9999999999987 999999875432 121222334444555666666 777888889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCch-hhhccCEEEEEeCCEEeEecChhHHhcC
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 532 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~-~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
|+.++||||++++||.+...|++.++.+.. +--+++.-|+.. ++.-|||.+++.+|+|..+|+++|+.++
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 999999999999999999999999999864 567777779986 4677999999999999999999999987
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=369.88 Aligned_cols=215 Identities=30% Similarity=0.492 Sum_probs=187.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcce
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++||+.+|+. ...+|+||||+|++||.+|++||||||||||+++|+|+..|++|+|.++|.|...- ...+|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999973 23699999999999999999999999999999999999999999999999988664 67889999
Q ss_pred EEEccCCCCC-hhhHHHHHhcCC-----CCCCCHHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHH
Q 000789 1119 GLVSQEPVLF-NETIRTNIAYGK-----QGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192 (1283)
Q Consensus 1119 ~~V~Qdp~Lf-~gTIreNl~~g~-----~~~~sd~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiAR 1192 (1283)
|||||+|.++ .-|++|||.|.. .....++.+.+.++..++.+.- +.. ...||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~----~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKK----VRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccc----hhhcCHHHHHHHHHHH
Confidence 9999999877 459999997531 1112345778888888776521 222 3479999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-C-ceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1193 AVLKNPKILLLDEATSALDAESERVVQDALERVMV-N-RTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1193 All~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~-~-~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
||+.+|++|||||||++||+.+...+++.|+++.+ + +||++.||.++.+.. ||+|++|++|+++.+|+++++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999875 4 699999999999988 999999999999999999998764
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=365.68 Aligned_cols=227 Identities=29% Similarity=0.524 Sum_probs=187.3
Q ss_pred ccEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECC------cccCCCCH
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDG------IDIKKLQL 446 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g------~~~~~~~~ 446 (1283)
..|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +++...+.
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 45999999999964 3689999999999999999999999999999999999999996666554 67766677
Q ss_pred HHHhcccEEEccCCCCCcc-cHHHHHhcCCC--CC-CHHHHHHHHHHhcHHHHHHhCCCCcc----ccccCCCCCCChHH
Q 000789 447 KWIREKIGLVSQEPILFAT-SLRENIAYGKE--NA-TDQEIRTAIELANAAKFIDKLPKGLD----TMAGEHGTQLSGGQ 518 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~--~~-~~~~~~~~~~~~~~~~~i~~lp~g~~----t~~~~~g~~LSgGq 518 (1283)
..+|++++|++|++.+|.+ |++||+.++.. .. .+++..+. +.+.++.+ |++ ...++.+..|||||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~l~~~~~~~~~~~~~~LS~G~ 158 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI-----VEECLRKV--GLWKEVYDRLNSPASQLSGGQ 158 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHH-----HHHHHHHc--CCCccchhhhcCCcccCCHHH
Confidence 7788999999999999976 99999997532 11 22222111 11222333 332 23456778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhH
Q 000789 519 KQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDE 597 (1283)
Q Consensus 519 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~ 597 (1283)
|||++||||++.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999988777999999999999954 99999999999999999999
Q ss_pred HhcCCCChhHHH
Q 000789 598 LIKDPEGPYTQL 609 (1283)
Q Consensus 598 l~~~~~~~~~~~ 609 (1283)
+.+++...|.+.
T Consensus 239 ~~~~~~~~~~~~ 250 (257)
T PRK14246 239 IFTSPKNELTEK 250 (257)
T ss_pred HHhCCCcHHHHH
Confidence 987655445443
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=367.98 Aligned_cols=229 Identities=28% Similarity=0.424 Sum_probs=186.7
Q ss_pred EEEEEEEEECCCC------CCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCCh--
Q 000789 1040 IELRCVSFKYPTR------PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKL-- 1111 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~------~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~-- 1111 (1283)
|+++||+|+|+.. .+.++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8999999999731 02469999999999999999999999999999999999999999999999999987765
Q ss_pred -HHHhcceEEEccCCC--CC-hhhHHHHHhcCCC--CCCCHHHHHHHHHHhChHHHHHhCCCCccc-ccCCCCCCCChhH
Q 000789 1112 -SWLRQQMGLVSQEPV--LF-NETIRTNIAYGKQ--GGATEEEIIAATEASNAHNFISALPHGYET-NVGERGVQLSGGQ 1184 (1283)
Q Consensus 1112 -~~lR~~i~~V~Qdp~--Lf-~gTIreNl~~g~~--~~~sd~ei~~al~~a~l~~~I~~lp~Gldt-~vge~G~~LSgGQ 1184 (1283)
..+|+.++|+||++. ++ ..|+++|+.+... .+.+.++ ....+.+.+..+ |+++ ........|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 357889999999983 43 4799999864210 0111111 111233444443 5543 3455667899999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecCh
Q 000789 1185 KQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSH 1261 (1283)
Q Consensus 1185 rQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~ 1261 (1283)
|||++|||||+.+|+||||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999998753 7899999999999975 999999999999999999
Q ss_pred HHHHhccCchhHHHH
Q 000789 1262 DALMKITDGAYASLV 1276 (1283)
Q Consensus 1262 ~eLl~~~~g~y~~L~ 1276 (1283)
+++... ++.|..-+
T Consensus 237 ~~~~~~-~~~~~~~~ 250 (268)
T PRK10419 237 GDKLTF-SSPAGRVL 250 (268)
T ss_pred hhccCC-CCHHHHHH
Confidence 999874 66554433
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=365.78 Aligned_cols=220 Identities=30% Similarity=0.488 Sum_probs=183.1
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC--C---CCceEEECCcccCC--CCH
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD--P---DAGEVLIDGIDIKK--LQL 446 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~--~~~ 446 (1283)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999973 369999999999999999999999999999999999975 5 59999999998864 234
Q ss_pred HHHhcccEEEccCCCCCcccHHHHHhcCCC--CC-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 000789 447 KWIREKIGLVSQEPILFATSLRENIAYGKE--NA-TD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519 (1283)
Q Consensus 447 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~-~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 519 (1283)
..+++.++|++|++.+|+.|+++|+.++.. .. .. +++.++++.+++. +++.......+.+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW-------DEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCc-------cchhhHHhcCcccCCHHHH
Confidence 566789999999999999999999987521 11 11 1222223333221 1223345667789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHH
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 598 (1283)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.++.|+|+|||+++.+.. ||+|++|++|++++.|+..++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767899999999999865 999999999999999999998
Q ss_pred hcCCC
Q 000789 599 IKDPE 603 (1283)
Q Consensus 599 ~~~~~ 603 (1283)
..++.
T Consensus 235 ~~~~~ 239 (252)
T PRK14255 235 FLNPK 239 (252)
T ss_pred hcCCC
Confidence 76643
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=365.59 Aligned_cols=203 Identities=27% Similarity=0.409 Sum_probs=172.3
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... ++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999974 3599999999999999999999999999999999999999999999999988642 34689
Q ss_pred EEccCCCCCh-hhHHHHHhcCCC-CCCCH----HHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1120 LVSQEPVLFN-ETIRTNIAYGKQ-GGATE----EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qdp~Lf~-gTIreNl~~g~~-~~~sd----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
|+||++.+|. .|++||+.++.. ...+. +++.++++..++.+... ....+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-----------RYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHH
Confidence 9999999886 699999976421 11222 33555666665544332 3345899999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchHHhh-cCEEEEEe--CCEEEEecCh
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVK--NGVIAEQGSH 1261 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~--~G~Ive~Gt~ 1261 (1283)
|+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999999873 37999999999999866 99999998 5999998754
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=361.04 Aligned_cols=214 Identities=28% Similarity=0.442 Sum_probs=173.8
Q ss_pred EEEEEEEEECCCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCceEEECCcccCCCCHHHHh
Q 000789 375 IELRDVYFRYPARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD---PDAGEVLIDGIDIKKLQLKWIR 450 (1283)
Q Consensus 375 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~i~~~g~~~~~~~~~~~r 450 (1283)
++++||+|.|++.+ .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999997542 3579999999999999999999999999999999999999 99999999999875 24567
Q ss_pred cccEEEccCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHH-HHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 000789 451 EKIGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAK-FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAI 528 (1283)
Q Consensus 451 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~-~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal 528 (1283)
++++|++|++.+|++ |++||+.++..........+.......++ .++.+ |++....+....||||||||++|||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 899999999999987 99999987532110000001111111122 33333 555555667789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCc-hhhh-ccCEEEEEeCCEEeEec
Q 000789 529 LKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRL-TTIR-NADLIAVVHQGKIVEKG 593 (1283)
Q Consensus 529 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l-~~~~-~~d~i~vl~~G~i~~~g 593 (1283)
+++|++|||||||++||+.+...+.+.+.++. +++|+|++||++ +.+. .||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999875 468999999998 4654 59999999999999875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=380.73 Aligned_cols=212 Identities=31% Similarity=0.465 Sum_probs=179.6
Q ss_pred EEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCC----hHHHhcceE
Q 000789 1044 CVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK----LSWLRQQMG 1119 (1283)
Q Consensus 1044 nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~----~~~lR~~i~ 1119 (1283)
|++++|++. . + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|++++
T Consensus 4 ~l~~~~~~~---~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDF---S-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCE---E-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 899999642 2 4 999999999999999999999999999999999999999999999986532 345788999
Q ss_pred EEccCCCCCh-hhHHHHHhcCCCCCCC----HHHHHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHHH
Q 000789 1120 LVSQEPVLFN-ETIRTNIAYGKQGGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAV 1194 (1283)
Q Consensus 1120 ~V~Qdp~Lf~-gTIreNl~~g~~~~~s----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARAl 1194 (1283)
||||++.+|. .|++||+.++.. ... ++++.+.++..++.++. .....+||||||||++|||||
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGqkqRvalAraL 146 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMK-RARPSERRISFERVIELLGIGHLL-----------GRLPGRLSGGEKQRVAIGRAL 146 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhh-ccChhHHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHH
Confidence 9999999996 499999987632 111 12355556655554443 334458999999999999999
Q ss_pred ccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhccCch
Q 000789 1195 LKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITDGA 1271 (1283)
Q Consensus 1195 l~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~~g~ 1271 (1283)
+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+...
T Consensus 147 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 226 (354)
T TIGR02142 147 LSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLP 226 (354)
T ss_pred HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCcc
Confidence 999999999999999999999999999998754 6899999999999876 9999999999999999999998765544
Q ss_pred h
Q 000789 1272 Y 1272 (1283)
Q Consensus 1272 y 1272 (1283)
|
T Consensus 227 ~ 227 (354)
T TIGR02142 227 W 227 (354)
T ss_pred c
Confidence 4
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=349.60 Aligned_cols=225 Identities=32% Similarity=0.536 Sum_probs=196.4
Q ss_pred cEEEEEEEEECCCCCC---------------------cccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcc
Q 000789 1039 AIELRCVSFKYPTRPD---------------------VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097 (1283)
Q Consensus 1039 ~I~~~nVsf~Y~~~~~---------------------~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G 1097 (1283)
.|+++||+.-++.++. .--++|+||+|+.||+..|.|-||||||||+++|.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4888888887765431 1246899999999999999999999999999999999999999
Q ss_pred eEEECCccCCCCChHHHh----cceEEEccCCCCC-hhhHHHHHhcCCC-CCC----CHHHHHHHHHHhChHHHHHhCCC
Q 000789 1098 HVLLDNIELPKFKLSWLR----QQMGLVSQEPVLF-NETIRTNIAYGKQ-GGA----TEEEIIAATEASNAHNFISALPH 1167 (1283)
Q Consensus 1098 ~I~idG~di~~~~~~~lR----~~i~~V~Qdp~Lf-~gTIreNl~~g~~-~~~----sd~ei~~al~~a~l~~~I~~lp~ 1167 (1283)
+|++||.|+..++.++|| +++++|+|..-|| ..||.||..||.. ... .++...++++.+|+.+|-.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999999999987775 5799999999887 5699999999842 122 23456789999999999888875
Q ss_pred CcccccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchHHh-hc
Q 000789 1168 GYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIK-NA 1244 (1283)
Q Consensus 1168 Gldt~vge~G~~LSgGQrQRlaiARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHrl~ti~-~~ 1244 (1283)
+||||+|||+.|||||..+|+||++|||.|||||--...+|+-|.++-+ ++|+++|||+|+... --
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 7999999999999999999999999999999999999999999877643 689999999998764 59
Q ss_pred CEEEEEeCCEEEEecChHHHHhccCchhHH
Q 000789 1245 DIIAVVKNGVIAEQGSHDALMKITDGAYAS 1274 (1283)
Q Consensus 1245 D~I~vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1274 (1283)
|||..|++|+|++.|||+|++.++..-|-+
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence 999999999999999999999877666643
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=406.02 Aligned_cols=104 Identities=32% Similarity=0.518 Sum_probs=93.7
Q ss_pred Cccc-ccCCCCCCCChhHHHHHHHHHHHccCC---CEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchHHh
Q 000789 1168 GYET-NVGERGVQLSGGQKQRIAIARAVLKNP---KILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIK 1242 (1283)
Q Consensus 1168 Gldt-~vge~G~~LSgGQrQRlaiARAll~~p---~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl~ti~ 1242 (1283)
|++. .++.....||||||||++|||+|+++| +++||||||++||+++...+.+.|+++. ++.|+|+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5544 357777899999999999999999999 9999999999999999999999999875 5789999999999999
Q ss_pred hcCEEEEE------eCCEEEEecChHHHHhccCch
Q 000789 1243 NADIIAVV------KNGVIAEQGSHDALMKITDGA 1271 (1283)
Q Consensus 1243 ~~D~I~vl------~~G~Ive~Gt~~eLl~~~~g~ 1271 (1283)
.||+|++| ++|+|++.|+++++.+.+.+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~ 932 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY 932 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccH
Confidence 99999999 799999999999999865443
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=327.77 Aligned_cols=214 Identities=30% Similarity=0.536 Sum_probs=184.7
Q ss_pred EEEEEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCCCCcceEEECCccCCCCChHHHhcceE
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|++.+++.+|++ ...+++||||+++.||.+||.|+|||||||+++.|..|+.|++|+|+|||.|+.+ ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 688999999985 3458999999999999999999999999999999999999999999999999977 4567899999
Q ss_pred EEccCCCCC-hhhHHHHHhcC-CCCCCCHHH----HHHHHHHhChHHHHHhCCCCcccccCCCCCCCChhHHHHHHHHHH
Q 000789 1120 LVSQEPVLF-NETIRTNIAYG-KQGGATEEE----IIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qdp~Lf-~gTIreNl~~g-~~~~~sd~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaiARA 1193 (1283)
+++-+.-|+ ..|.||||.|. ...+.++.+ +.+.-+.-++.++ +|+.+| +||-|+|||++||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~-------~~rRv~----~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEY-------LDRRVG----EFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHH-------HHHHHh----hhchhhHHHHHHHHH
Confidence 999777776 56999999853 222344443 3334444444444 455555 699999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-CceEEEEecCchHHhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMV-NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1194 ll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~~-~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1267 (1283)
|+++|+|++||||||+||.-+.+.+++-+.+... +++||+-||-++.++. ||+|+++.+|+++..|+++++.++
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999999998864 8999999999999995 999999999999999999999875
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=365.76 Aligned_cols=220 Identities=29% Similarity=0.421 Sum_probs=181.7
Q ss_pred cEEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CceEEECCcccCCC-----C
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD---AGEVLIDGIDIKKL-----Q 445 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~~~~~~-----~ 445 (1283)
-|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 46999999999999999999999999999999999999986 49999999988653 2
Q ss_pred HHHHhcccEEEccCCCCCcc-cHHHHHhcCCCCCCH---H--HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 000789 446 LKWIREKIGLVSQEPILFAT-SLRENIAYGKENATD---Q--EIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQK 519 (1283)
Q Consensus 446 ~~~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~---~--~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 519 (1283)
...++++++|+||++.+|.. |++||+.++...... . ..........+.+.++.+ |++........+||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHH
Confidence 34567889999999998874 999999876421100 0 000000111233455555 555556667789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChh
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHD 596 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~ 596 (1283)
||++|||||+.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998853 6899999999998755 9999999999999999999
Q ss_pred HH
Q 000789 597 EL 598 (1283)
Q Consensus 597 ~l 598 (1283)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 86
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=375.73 Aligned_cols=204 Identities=25% Similarity=0.478 Sum_probs=174.6
Q ss_pred CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccEEEccCCCCCcc-cHH
Q 000789 390 VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFAT-SLR 468 (1283)
Q Consensus 390 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~ 468 (1283)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++||+||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999875 345668899999999999876 999
Q ss_pred HHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 000789 469 ENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 546 (1283)
Q Consensus 469 ~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~ 546 (1283)
||+.+... ..+..+..+ .+++.++.+ |++........+||||||||++|||||+++|++|||||||++||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEE-----RAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 99987421 112222111 223455555 565556667789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcC
Q 000789 547 ESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 547 ~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 601 (1283)
.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999885 46899999999999976 999999999999999999998754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=360.75 Aligned_cols=211 Identities=25% Similarity=0.413 Sum_probs=169.9
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCCHHHHHHHHhccCC---CCcceEEECCccCCCCChHHHh
Q 000789 1040 IELRCVSFKYPTRP-DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYD---PDSGHVLLDNIELPKFKLSWLR 1115 (1283)
Q Consensus 1040 I~~~nVsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~---~~~G~I~idG~di~~~~~~~lR 1115 (1283)
+.|+||+|+|+... ..++|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 67999999998542 2579999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cceEEEccCCCCChh-hHHHHHhcCCC---CCCCHHHHHHHHHHhChHH-HHHhCCCCcccccCCCCCCCChhHHHHHHH
Q 000789 1116 QQMGLVSQEPVLFNE-TIRTNIAYGKQ---GGATEEEIIAATEASNAHN-FISALPHGYETNVGERGVQLSGGQKQRIAI 1190 (1283)
Q Consensus 1116 ~~i~~V~Qdp~Lf~g-TIreNl~~g~~---~~~sd~ei~~al~~a~l~~-~I~~lp~Gldt~vge~G~~LSgGQrQRlai 1190 (1283)
++++|+||++.+|.+ |++||+.++.. .....++... ...++ .+..+ +++.........||||||||++|
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~l 154 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRK----KRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSI 154 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHH----HHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHH
Confidence 899999999999986 99999986411 0111111110 00111 22221 23222334556899999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCceEEEEecCc-hHH-hhcCEEEEEeCCEEEEec
Q 000789 1191 ARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRL-TTI-KNADIIAVVKNGVIAEQG 1259 (1283)
Q Consensus 1191 ARAll~~p~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHrl-~ti-~~~D~I~vl~~G~Ive~G 1259 (1283)
|||++++|++|||||||++||+.+...+.+.|++.. +++|+|++||++ +.+ ..||+|++|++|++++.|
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999875 478999999998 455 559999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=363.52 Aligned_cols=215 Identities=25% Similarity=0.364 Sum_probs=177.4
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCC--CCCCceEEECCcccCCCCHHHH-hc
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFY--DPDAGEVLIDGIDIKKLQLKWI-RE 451 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~--~~~~G~i~~~g~~~~~~~~~~~-r~ 451 (1283)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999963 36999999999999999999999999999999999994 7999999999999988776554 45
Q ss_pred ccEEEccCCCCCcc-cHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCC-CCChHHH
Q 000789 452 KIGLVSQEPILFAT-SLRENIAYGKEN---------ATDQEIRTAIELANAAKFIDKLPKGLDT-MAGEHGT-QLSGGQK 519 (1283)
Q Consensus 452 ~i~~v~Q~~~l~~~-ti~~ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~lp~g~~t-~~~~~g~-~LSgGqk 519 (1283)
.++||+|++.+|++ |++||+.+.... .+.++.. ..+.+.++.+ |++. ....... .||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 69999999999876 899999764211 0111111 1223444444 5543 2344444 5999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc--cCEEEEEeCCEEeEecChh
Q 000789 520 QRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRN--ADLIAVVHQGKIVEKGTHD 596 (1283)
Q Consensus 520 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~--~d~i~vl~~G~i~~~g~~~ 596 (1283)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999998864 6899999999999975 7999999999999999987
Q ss_pred HHh
Q 000789 597 ELI 599 (1283)
Q Consensus 597 ~l~ 599 (1283)
++.
T Consensus 231 ~~~ 233 (243)
T TIGR01978 231 LAK 233 (243)
T ss_pred Hhc
Confidence 653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=379.76 Aligned_cols=216 Identities=31% Similarity=0.528 Sum_probs=182.8
Q ss_pred EEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCC----HHHHhcccE
Q 000789 379 DVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ----LKWIREKIG 454 (1283)
Q Consensus 379 ~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~~r~~i~ 454 (1283)
|++++|++ .. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....+++++
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 78999963 23 5 999999999999999999999999999999999999999999999986532 235678899
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000789 455 LVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPK 533 (1283)
Q Consensus 455 ~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~ 533 (1283)
||+|++.+|+. |++||+.++.......+. ...+.+.++.+ |++......+.+||||||||++|||||+.+|+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~-----~~~~~~~l~~~--gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSER-----RISFERVIELL--GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHH-----HHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999975 999999987543222111 11233455555 77777777888999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecChhHHhcCCCChh
Q 000789 534 ILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPY 606 (1283)
Q Consensus 534 illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~ 606 (1283)
+|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+...|
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 9999999999999999999999998754 6899999999999875 99999999999999999999987654333
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=354.31 Aligned_cols=202 Identities=33% Similarity=0.514 Sum_probs=171.3
Q ss_pred EEEEEEEEECCCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEECCcccCCCCHHHHhcccE
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 454 (1283)
++++||+++|+. .++|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||+++...+ .+++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 468999999999999999999999999999999999999999999999987543 3577899
Q ss_pred EEccCCCCCcc-cHHHHHhcCC-CCC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000789 455 LVSQEPILFAT-SLRENIAYGK-ENA-----TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARA 527 (1283)
Q Consensus 455 ~v~Q~~~l~~~-ti~~ni~~~~-~~~-----~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqriaiARa 527 (1283)
||+|++.+|.. |++||+.++. +.. .++++.++++..++.+. ......+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADY-----------LDRLPEQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHH-----------hhCCcccCCHHHHHHHHHHHH
Confidence 99999999875 9999998642 111 12234444444444443 444456899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEeEecC
Q 000789 528 ILKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGT 594 (1283)
Q Consensus 528 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~ 594 (1283)
++.+|+++||||||++||+++.+.+.+.|.++.+ ++|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999998753 6899999999999865 99999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1283 | ||||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 0.0 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-104 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-104 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 6e-87 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-103 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-86 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 9e-80 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-67 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-77 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 7e-75 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-76 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-74 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 5e-72 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 6e-68 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-62 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-62 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-62 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 6e-51 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 7e-58 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-50 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 7e-57 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 7e-54 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 7e-57 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 7e-54 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-56 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-53 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-56 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-53 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-56 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-53 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-55 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-52 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-55 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-52 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-53 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-53 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 8e-53 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-48 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-50 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-49 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-49 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-48 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 3e-27 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-21 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-26 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-21 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-25 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-20 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 6e-25 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-24 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-15 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-24 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-15 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 6e-24 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-15 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 7e-23 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-18 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-21 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-17 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-20 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-15 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-19 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 4e-13 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-19 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-15 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 5e-19 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-14 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 6e-19 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 7e-15 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-18 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-12 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-18 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-14 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 1e-17 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 1e-07 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-17 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-13 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-17 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-13 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-17 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-11 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-17 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-13 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-17 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-13 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-17 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-12 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-17 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-11 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 5e-17 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 7e-13 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 5e-17 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-13 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-17 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-10 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 9e-17 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-10 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-16 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-10 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-16 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-10 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-16 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-09 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-16 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-11 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 4e-16 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-11 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 4e-16 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-11 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 5e-16 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 4e-12 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-16 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-11 | ||
| 1g29_1 | 372 | Malk Length = 372 | 7e-16 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-11 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-15 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 9e-11 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-15 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-12 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-15 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-11 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 4e-14 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-09 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-13 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-06 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-13 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 4e-08 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-13 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 4e-08 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-13 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 1e-07 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-12 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 4e-08 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-12 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 7e-06 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-12 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 3e-09 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 6e-12 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-08 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 8e-12 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-11 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-11 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 3e-08 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 6e-11 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 9e-09 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-09 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-04 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 2e-09 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 3e-04 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-07 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-05 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 2e-07 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 7e-07 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 1e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-05 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 2e-06 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 1e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-06 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 2e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 3e-06 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 3e-06 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 1e-04 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 9e-06 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 1e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 6e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 6e-05 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 3e-04 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 3e-04 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 3e-04 | ||
| 3zqj_A | 993 | Mycobacterium Tuberculosis Uvra Length = 993 | 5e-04 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 5e-04 |
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra Length = 993 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1283 | |||
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 0.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-173 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-171 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-169 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-166 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-164 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-161 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-159 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-157 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-147 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-144 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-141 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-135 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-130 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-129 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-128 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-128 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-121 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-119 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-111 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-103 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 7e-65 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 8e-57 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-44 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-43 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 3e-44 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-41 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-44 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-37 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 3e-43 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-36 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 4e-43 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-38 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-41 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-40 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-41 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 2e-34 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 5e-40 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-33 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 3e-36 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 5e-30 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 5e-36 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 4e-28 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-34 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-22 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 6e-34 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-27 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-33 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 3e-29 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 3e-33 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-29 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 6e-33 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-33 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-28 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-27 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-32 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-26 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 5e-32 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-25 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-31 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-28 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-27 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-27 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-31 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-30 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-27 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-25 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 8e-31 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 7e-24 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-30 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-26 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 4e-30 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 7e-28 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 7e-30 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-25 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-29 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 7e-21 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 4e-29 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-28 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-28 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 7e-26 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 6e-25 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-16 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-22 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 5e-14 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 8e-22 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 1e-13 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 4e-21 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 3e-13 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-20 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-12 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 1e-18 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 6e-09 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-18 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 4e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-08 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-15 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-15 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 6e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-04 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-09 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 3e-07 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 4e-08 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 2e-07 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 2e-07 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 4e-07 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 6e-07 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 1e-04 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 7e-04 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 4e-06 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 1e-05 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 2e-04 |
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 1738 bits (4503), Expect = 0.0
Identities = 520/1280 (40%), Positives = 771/1280 (60%), Gaps = 46/1280 (3%)
Query: 24 NNNKNDGNDNQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGS 83
+ K V +F +A D + M+VGT++AI G+A P M LIFG + +SF S
Sbjct: 21 KSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFAS 80
Query: 84 -----------------SDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQA 126
+ + + E++ A + + AG I A++QVS W + RQ
Sbjct: 81 VGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQI 140
Query: 127 TRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGG 186
+IR + I+ Q+IG+FD GE+ R++ D I E +G+K+G F Q M+TFFGG
Sbjct: 141 HKIRQKFFHAIMNQEIGWFDVHDV-GELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGG 199
Query: 187 FVVALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRT 246
F++ RGW L LV+LA P + ++ G A I+S + + AY++AG V E+ ++ IRT
Sbjct: 200 FIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRT 259
Query: 247 VSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIE 306
V +F G+K+ +E+YNN L+ A R +++ + + I +G L + +Y LA WYG+ L+I
Sbjct: 260 VIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVIS 319
Query: 307 KGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGI 366
K Y+ G V+ V +++ G S+GQ SP + AFA + AAY++F+ I KP ID + SG
Sbjct: 320 KEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGH 379
Query: 367 TLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERF 426
+ I+G +E ++++F YP+R EVQI G +L V SG T ALVG SG GKST + L++R
Sbjct: 380 KPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL 439
Query: 427 YDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTA 486
YDP G V IDG DI+ + ++++RE IG+VSQEP+LFAT++ ENI YG+E+ T EI A
Sbjct: 440 YDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKA 499
Query: 487 IELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 546
++ ANA FI KLP DT+ GE G QLSGGQKQRIAIARA+++NPKILLLDEATSALD
Sbjct: 500 VKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 559
Query: 547 ESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPY 606
ESE +VQ AL K RTT+V+AHRL+T+RNAD+IA G IVE+G HDEL+++ +G Y
Sbjct: 560 ESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIY 618
Query: 607 TQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSSGSRHSF 666
+LV Q E E + S +I + M+ S +RR +R S H
Sbjct: 619 FKLVMTQTAGNEIEL----GNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHD- 673
Query: 667 GFTYGVPGPINVFETEEGDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAG 726
+ E S R+ LN E+P ++G A
Sbjct: 674 ------------------QDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAI 715
Query: 727 IHGVIFPIFGLLLSSSIRMFFEP--EDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGV 784
I+G + P F ++ S + +F + R++S ++L++L+LGII+ I Q + FG
Sbjct: 716 INGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGK 775
Query: 785 AGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQN 844
AG L +R+R + F+ ++ Q++SWFDDP N++G++ RL+ DA+ ++ G LA++ QN
Sbjct: 776 AGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQN 835
Query: 845 IATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVAND 904
IA + G+II+ W L ++LA+ P++ + G + K + G + K E + ++A +
Sbjct: 836 IANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATE 895
Query: 905 AVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYI 964
A+ + RTV S E+K +Y + + P +N +++ + G F F+ ++Y + A F
Sbjct: 896 AIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRF 955
Query: 965 GSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKID 1024
G+ LV TF V VF A+ A+ V Q S+ APD KA SA+ I I++ P+ID
Sbjct: 956 GAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEID 1015
Query: 1025 SSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTV 1084
S +G+ + + G ++ V F YPTRP + + + L L + G+T+ALVG SG GKSTV
Sbjct: 1016 SYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTV 1075
Query: 1085 IALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGG- 1143
+ L+ERFYDP +G V LD E+ + + WLR Q+G+VSQEP+LF+ +I NIAYG
Sbjct: 1076 VQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRV 1135
Query: 1144 ATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLL 1203
+ EEI+ A + +N H FI +LP Y T VG++G QLSGGQKQRIAIARA+++ P ILLL
Sbjct: 1136 VSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLL 1195
Query: 1204 DEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDA 1263
DEATSALD ESE+VVQ+AL++ RT +V+AHRL+TI+NAD+I V++NG + E G+H
Sbjct: 1196 DEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQ 1255
Query: 1264 LMKITDGAYASLVALHVSSS 1283
L+ G Y S+V++ +
Sbjct: 1256 LLA-QKGIYFSMVSVQAGAK 1274
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 733 bits (1895), Expect = 0.0
Identities = 229/618 (37%), Positives = 347/618 (56%), Gaps = 6/618 (0%)
Query: 8 STQLKGIKRGDNNNNINNNKNDGNDNQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAH 67
ST+ D + ++ + D F+++ + +VG AI +G
Sbjct: 663 STRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLN-STEWPYFVVGIFCAIINGGLQ 721
Query: 68 PFMTLIFGHLINSFGSSDRSHVV-HEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQA 126
P ++IF ++ F + + ++ FL L + I FLQ + GE
Sbjct: 722 PAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILT 781
Query: 127 TRIRGLYLKTILRQDIGFFDT-ETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFG 185
R+R + K++LRQD+ +FD + TTG + R++ D ++ A G ++ Q ++
Sbjct: 782 KRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGT 841
Query: 186 GFVVALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIR 245
G +++L GW L L+LLA +P I IAG ++S + + + +G + + + R
Sbjct: 842 GIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFR 901
Query: 246 TVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLII 305
TV S T E++ Y LQ+ YR A+++ V GI + +Y A +G+ L+
Sbjct: 902 TVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVT 961
Query: 306 EKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSG 365
++ V+ V AI+ G M++GQ S +A +A + I++ P+ID Y T G
Sbjct: 962 QQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQG 1021
Query: 366 ITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVER 425
+ +EG ++ V F YP RP + + G SL V G T ALVG SG GKSTV+ L+ER
Sbjct: 1022 LKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081
Query: 426 FYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKEN--ATDQEI 483
FYDP AG V +DG +IK+L ++W+R ++G+VSQEPILF S+ ENIAYG + + +EI
Sbjct: 1082 FYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEI 1141
Query: 484 RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSA 543
A + AN +FID LP +T G+ GTQLSGGQKQRIAIARA+++ P ILLLDEATSA
Sbjct: 1142 VRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSA 1201
Query: 544 LDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPE 603
LD ESE++VQ+AL K RT +V+AHRL+TI+NADLI V+ GK+ E GTH +L+ +
Sbjct: 1202 LDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA-QK 1260
Query: 604 GPYTQLVRLQEGSKEAED 621
G Y +V +Q G+K +
Sbjct: 1261 GIYFSMVSVQAGAKRSYV 1278
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 525 bits (1356), Expect = e-173
Identities = 189/589 (32%), Positives = 307/589 (52%), Gaps = 16/589 (2%)
Query: 695 MIEKRQKLSM---RRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPED 751
M + + RRL P L++ IA ++ LL + F D
Sbjct: 1 MHNDKDLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD 60
Query: 752 KLRKDSRFWALIYLVLGIINLIAVP--FQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWF 809
+ S + +V+G++ L + +Y GK++ +R F ++ +++F
Sbjct: 61 R----SVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFF 116
Query: 810 DDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAV 869
D S+G++ +R++ D+ + S +L VV+ A+I I+ F +W L+ +++ +
Sbjct: 117 DK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVL 174
Query: 870 SPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKC 929
+P++ + +K + S + + + + A + + V F +E ++K
Sbjct: 175 APIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVS 234
Query: 930 EGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTIS 989
G++ S L+ AF Y S T G + VF ++
Sbjct: 235 NKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIAL 294
Query: 990 ALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKY 1049
+ + + + + ++F ILDS+ + D K + G +E R V+F Y
Sbjct: 295 MRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRV---IDRATGDLEFRNVTFTY 351
Query: 1050 PTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF 1109
P R +V RN+ L IP+GKTVALVG SGSGKST+ +LI RFYD D GH+L+D +L ++
Sbjct: 352 PGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREY 410
Query: 1110 KLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGY 1169
L+ LR Q+ LVSQ LFN+T+ NIAY + + E+I A + A +FI+ + +G
Sbjct: 411 TLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGL 470
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR 1229
+T +GE GV LSGGQ+QRIAIARA+L++ IL+LDEATSALD ESER +Q AL+ + NR
Sbjct: 471 DTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR 530
Query: 1230 TTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278
T++V+AHRL+TI+ AD I VV++G+I E+G+H L+ G YA L +
Sbjct: 531 TSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVYAQLHKM 578
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 519 bits (1339), Expect = e-171
Identities = 183/589 (31%), Positives = 305/589 (51%), Gaps = 13/589 (2%)
Query: 27 KNDGNDNQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINS-FGSSD 85
ND + + F +L+ +IV I+ I + + FM + L++ FG +D
Sbjct: 2 HNDKDLSTWQTFRRLWPTI-APFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD 60
Query: 86 RSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFF 145
RS ++ + + + L GI +++ C + +R ++ + FF
Sbjct: 61 RSVLL----WMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFF 116
Query: 146 DTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACL 205
D + +TG ++ R++ D+ + + + ++ ++ G F++ W L+++L+
Sbjct: 117 D-KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLA 175
Query: 206 PAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQ 265
P + IA ++ +S Q + T EQ + G + V F G++ ++++
Sbjct: 176 PIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSN 235
Query: 266 VAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGG 325
++ S I ++ L ++ S + GT+ V +++
Sbjct: 236 KMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALM 295
Query: 326 MSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYP 385
L + F G AA +F + + + D +++ G++E R+V F YP
Sbjct: 296 RPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD---EGKRVIDRATGDLEFRNVTFTYP 352
Query: 386 ARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ 445
R EV +L +P+G T ALVG+SGSGKST+ SL+ RFYD D G +L+DG D+++
Sbjct: 353 GR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT 411
Query: 446 LKWIREKIGLVSQEPILFATSLRENIAYGK-ENATDQEIRTAIELANAAKFIDKLPKGLD 504
L +R ++ LVSQ LF ++ NIAY + E + ++I A +A A FI+K+ GLD
Sbjct: 412 LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLD 471
Query: 505 TMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRT 564
T+ GE+G LSGGQ+QRIAIARA+L++ IL+LDEATSALD ESER +Q AL ++ +RT
Sbjct: 472 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRT 531
Query: 565 TVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
++V+AHRL+TI AD I VV G IVE+GTH EL+ G Y QL ++Q
Sbjct: 532 SLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 515 bits (1328), Expect = e-169
Identities = 174/582 (29%), Positives = 289/582 (49%), Gaps = 21/582 (3%)
Query: 703 SMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWAL 762
+ +RL + L++ +IA I+ LL + F + L
Sbjct: 12 TFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE-------SNFL 64
Query: 763 IYLVLGIINLIAVP-----FQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSG 817
L I+ L+ V +Y G ++ ++R F +H + +FD S+G
Sbjct: 65 RILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTG 122
Query: 818 SVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQG 877
+ +R++ D+ + +L +V+ A+I L + F +W L+ V++ V+P++
Sbjct: 123 GLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAI 182
Query: 878 YTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGV 937
+K + S + + + A + + V S+ +E ++K + +
Sbjct: 183 SFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTM 242
Query: 938 RRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALG-VSQT 996
+ ++ ++ SV + T G V F+ + +
Sbjct: 243 KLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFT-VVFSAMFGLMRPLKAL 301
Query: 997 SAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQ 1056
+++ + + + ++F ++D + + D+ K E V G ++++ V+F Y + +
Sbjct: 302 TSVTSEFQRGMAACQTLFGLMDLETERDNGKYE---AERVNGEVDVKDVTFTYQGK-EKP 357
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116
++ SIP GKTVALVG SGSGKST+ L RFYD DSG + LD ++ +KL+ LR+
Sbjct: 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRR 417
Query: 1117 QMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGER 1176
LVSQ LFN+TI NIAY +G T E+I A ++A FI +P G +T +GE
Sbjct: 418 HFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGEN 477
Query: 1177 GVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAH 1236
G LSGGQ+QR+AIARA+L++ +L+LDEATSALD ESER +Q AL+ + N+T +V+AH
Sbjct: 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAH 537
Query: 1237 RLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278
RL+TI+ AD I VV G I E+G H L+ DGAYA L +
Sbjct: 538 RLSTIEQADEILVVDEGEIIERGRHADLLA-QDGAYAQLHRI 578
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 507 bits (1309), Expect = e-166
Identities = 174/589 (29%), Positives = 299/589 (50%), Gaps = 13/589 (2%)
Query: 27 KNDGNDNQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINS-FGSSD 85
+++ F +L+ + + ++V TI+ + + A +M + L++ FG+++
Sbjct: 2 SLHSDESNWQTFKRLWTYI-RLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE 60
Query: 86 RSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFF 145
+ + + L L G++ F C ++R + + FF
Sbjct: 61 SNFLR----ILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFF 116
Query: 146 DTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACL 205
D + +TG ++ R++ D+ + A + ++ ++ G + W L+LVL+
Sbjct: 117 D-QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVA 175
Query: 206 PAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQ 265
P + A ++ K+S Q A + EQ + G + V S+ G++ ++++
Sbjct: 176 PVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSN 235
Query: 266 VAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGG 325
+ ++ I V+ + ++ S I GT V A+
Sbjct: 236 SMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLM 295
Query: 326 MSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYP 385
L + + F G AA +F + + + D E++ GE++++DV F Y
Sbjct: 296 RPLKALTSVTSEFQRGMAACQTLFGLMDLETERD---NGKYEAERVNGEVDVKDVTFTYQ 352
Query: 386 ARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ 445
+ E + S +P G T ALVG+SGSGKST+ +L RFYD D+G + +DG D++ +
Sbjct: 353 GK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK 411
Query: 446 LKWIREKIGLVSQEPILFATSLRENIAYGKE-NATDQEIRTAIELANAAKFIDKLPKGLD 504
L +R LVSQ LF ++ NIAY E T ++I A A+A +FI+ +P+GLD
Sbjct: 412 LTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLD 471
Query: 505 TMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRT 564
T+ GE+GT LSGGQ+QR+AIARA+L++ +L+LDEATSALD ESER +Q AL ++ ++T
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKT 531
Query: 565 TVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
+V+AHRL+TI AD I VV +G+I+E+G H +L+ +G Y QL R+Q
Sbjct: 532 VLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ-DGAYAQLHRIQ 579
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 500 bits (1291), Expect = e-164
Identities = 179/578 (30%), Positives = 278/578 (48%), Gaps = 13/578 (2%)
Query: 704 MRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALI 763
++R KP + I I I + LL+ +I + I
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61
Query: 764 YLVLGIINLIAVP-----FQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGS 818
+ + + + V + Y K++ IR + + ++ + N G
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQ 119
Query: 819 VGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGY 878
V +R+ D + + L + + TI L I F + L L + P ++ Y
Sbjct: 120 VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 879 TQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVR 938
++ + + E ++ V I V SF E+ ++KK L ++
Sbjct: 180 VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239
Query: 939 RGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALG-VSQTS 997
+ F V +G+ L G T G + F G + +
Sbjct: 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLA-AFVGYLELLFGPLRRLV 298
Query: 998 AMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQI 1057
A T++ S +F+++D I + + G I++ VSF+Y + I
Sbjct: 299 ASFTTLTQSFASMDRVFQLIDEDYDIKNGVGA-QPIEIKQGRIDIDHVSFQYNDN-EAPI 356
Query: 1058 FRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQ 1117
+++ LSI G+TVA VG SG GKST+I LI RFYD SG +L+D + F LR Q
Sbjct: 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416
Query: 1118 MGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERG 1177
+GLV Q+ +LF++T++ NI G+ AT+EE++ A + +NAH+FI LP GY+T VGERG
Sbjct: 417 IGLVQQDNILFSDTVKENILLGRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG 475
Query: 1178 VQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHR 1237
V+LSGGQKQR++IAR L NP IL+LDEATSALD ESE ++Q+AL+ + +RTT++VAHR
Sbjct: 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHR 535
Query: 1238 LTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
L+TI +AD I V++NG I E G+H L+ GAY L
Sbjct: 536 LSTITHADKIVVIENGHIVETGTHRELIA-KQGAYEHL 572
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 492 bits (1270), Expect = e-161
Identities = 171/580 (29%), Positives = 262/580 (45%), Gaps = 17/580 (2%)
Query: 37 PFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMT-LIFGHLINSFGSSDRSHVVHEVSK 95
P+ ++ I+ + P + +IN+ + V H
Sbjct: 11 PYKYRIFA----TIIVGIIKFGIP----MLIPLLIKYAIDGVINNHALTTDEKVHHLTIA 62
Query: 96 VAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRG-LYLKTILRQDIGFFDTETTTGEV 154
+ + F++ T + IR LY + F+ G+V
Sbjct: 63 IGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNH-LQALSARFYA-NNQVGQV 120
Query: 155 IGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGS 214
I R+ D ++ + + T + L L L P ++
Sbjct: 121 ISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYV 180
Query: 215 MALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQ 274
+ K++ A +E + + V GI V SF E + ++ K A++
Sbjct: 181 FFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240
Query: 275 GMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPC 334
+ + + + G+ L I GT+ + + L +
Sbjct: 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVAS 300
Query: 335 LNAFAGGQAAAYKMFETIKRKPKIDPYDTSG-ITLEKIEGEIELRDVYFRYPARPEVQIF 393
A+ ++F+ I I + G +E +G I++ V F+Y E I
Sbjct: 301 FTTLTQSFASMDRVFQLIDEDYDIK--NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPIL 357
Query: 394 AGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453
+L + G T A VG SG GKST+I+L+ RFYD +G++LIDG +IK +R +I
Sbjct: 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417
Query: 454 GLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQ 513
GLV Q+ ILF+ +++ENI G+ ATD+E+ A ++ANA FI LP+G DT GE G +
Sbjct: 418 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477
Query: 514 LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLT 573
LSGGQKQR++IAR L NP IL+LDEATSALD ESE I+Q+AL + RTT++VAHRL+
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537
Query: 574 TIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
TI +AD I V+ G IVE GTH ELI +G Y L +Q
Sbjct: 538 TITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQ 576
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 475 bits (1224), Expect = e-159
Identities = 110/261 (42%), Positives = 156/261 (59%), Gaps = 3/261 (1%)
Query: 1025 SSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTV 1084
S + ++ G ++ + VSF YP P+VQ+ + L ++ GK ALVG +GSGKSTV
Sbjct: 2 SPLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
Query: 1085 IALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGA 1144
AL++ Y P G VLLD L ++ +L Q+ V QEP+LF + R NIAYG
Sbjct: 62 AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP 121
Query: 1145 TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLD 1204
T EEI A S AH+FIS P GY+T VGE G QLSGGQ+Q +A+ARA+++ P++L+LD
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 1205 EATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHD 1262
ATSALDA ++ VQ L +RT +++ +L+ + A I +K G + EQG+H
Sbjct: 182 NATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHL 241
Query: 1263 ALMKITDGAYASLVALHVSSS 1283
LM+ G Y S+V + S
Sbjct: 242 QLME-RGGCYRSMVEALAAPS 261
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 470 bits (1213), Expect = e-157
Identities = 99/266 (37%), Positives = 151/266 (56%), Gaps = 5/266 (1%)
Query: 358 IDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKS 417
+ P + ++G ++ +DV F YP P VQ+ G + + G ALVG +GSGKS
Sbjct: 1 MSPLS-GSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59
Query: 418 TVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGK-E 476
TV +L++ Y P G+VL+DG + + ++ ++ V QEP+LF S RENIAYG
Sbjct: 60 TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119
Query: 477 NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILL 536
T +EI + A FI P+G DT GE G QLSGGQ+Q +A+ARA+++ P++L+
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 537 LDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGT 594
LD ATSALDA ++ VQ L + SRT +++ +L+ A I + +G + E+GT
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Query: 595 HDELIKDPEGPYTQLVRLQEGSKEAE 620
H +L++ G Y +V +A
Sbjct: 240 HLQLME-RGGCYRSMVEALAAPSDAA 264
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 443 bits (1141), Expect = e-147
Identities = 109/245 (44%), Positives = 160/245 (65%), Gaps = 1/245 (0%)
Query: 369 EKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD 428
+I R++ FRY V I +L + G +VG+SGSGKST+ L++RFY
Sbjct: 2 HHHHHDITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 429 PDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIE 488
P+ G+VLIDG D+ W+R ++G+V Q+ +L S+ +NI+ + +++ A +
Sbjct: 61 PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAK 120
Query: 489 LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
LA A FI +L +G +T+ GE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ES
Sbjct: 121 LAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180
Query: 549 ERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
E ++ + KI RT +++AHRL+T++NAD I V+ +GKIVE+G H EL+ +PE Y+
Sbjct: 181 EHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240
Query: 609 LVRLQ 613
L +LQ
Sbjct: 241 LYQLQ 245
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 434 bits (1120), Expect = e-144
Identities = 114/243 (46%), Positives = 158/243 (65%), Gaps = 2/243 (0%)
Query: 1036 VGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD 1095
I R + F+Y V I N+ LSI G+ + +VG SGSGKST+ LI+RFY P+
Sbjct: 4 HHHDITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 62
Query: 1096 SGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEA 1155
+G VL+D +L +WLR+Q+G+V Q+ VL N +I NI+ G + E++I A +
Sbjct: 63 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKL 121
Query: 1156 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE 1215
+ AH+FIS L GY T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 1216 RVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
V+ + ++ RT +++AHRL+T+KNAD I V++ G I EQG H L+ + Y+ L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Query: 1276 VAL 1278
L
Sbjct: 242 YQL 244
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 427 bits (1100), Expect = e-141
Identities = 103/239 (43%), Positives = 148/239 (61%), Gaps = 3/239 (1%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+ R V F Y QI R++ +A G SG GKST+ +L+ERFY P +G +
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAH 1159
+D + L R Q+G VSQ+ + TIR N+ YG +G T+E++ + + A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1160 NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQ 1219
+F+ +P T VGERGV++SGGQ+QR+AIARA L+NPKIL+LDEAT++LD+ESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1220 DALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278
AL+ +M RTT+V+AHRL+TI +AD I ++ G I G H+ L+ T YA V+
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVSE 237
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 413 bits (1063), Expect = e-135
Identities = 107/245 (43%), Positives = 154/245 (62%), Gaps = 4/245 (1%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+ R V F Y ++ S + A G SG GKST+ SL+ERFY P AGE+
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKE-NATDQEIRTAIELANAA 493
IDG I + L+ R +IG VSQ+ + A ++REN+ YG E + TD+++ ++LA A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
F++ +P L+T GE G ++SGGQ+QR+AIARA L+NPKIL+LDEAT++LD+ESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 554 DALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
AL +M RTT+V+AHRL+TI +AD I + +G+I G H+EL+ Y + V Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
Query: 614 EGSKE 618
+
Sbjct: 239 LTVGQ 243
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 399 bits (1028), Expect = e-130
Identities = 109/256 (42%), Positives = 173/256 (67%), Gaps = 4/256 (1%)
Query: 1023 IDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKS 1082
++S G IE V+F YP + + + +++ IPSG T ALVG +GSGKS
Sbjct: 2 LESFSLTS-HEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKS 60
Query: 1083 TVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQG 1142
T+ L+ RFYD + G + + + K+ + +R +G+V Q+ +LFNETI+ NI YGK
Sbjct: 61 TIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD 119
Query: 1143 GATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILL 1202
AT+EE+I AT+++ ++FI ALP ++T VG +G++LSGG++QRIAIAR +LK+PKI++
Sbjct: 120 -ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVI 178
Query: 1203 LDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHD 1262
DEATS+LD+++E + Q A+E + NRT +++AHRL+TI +A+ I ++ G I E+G+H
Sbjct: 179 FDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHK 238
Query: 1263 ALMKITDGAYASLVAL 1278
L+K+ +G YA + +
Sbjct: 239 DLLKL-NGEYAEMWNM 253
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 398 bits (1024), Expect = e-129
Identities = 112/261 (42%), Positives = 171/261 (65%), Gaps = 3/261 (1%)
Query: 358 IDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKS 417
++ + + +K IE DV F YP + + + +PSGTT ALVG +GSGKS
Sbjct: 2 LESFSLTS-HEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKS 60
Query: 418 TVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKEN 477
T+ L+ RFYD + G++ I G ++ K IR IG+V Q+ ILF +++ NI YGK +
Sbjct: 61 TIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD 119
Query: 478 ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLL 537
ATD+E+ A + A FI+ LPK DT+ G G +LSGG++QRIAIAR +LK+PKI++
Sbjct: 120 ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIF 179
Query: 538 DEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDE 597
DEATS+LD+++E + Q A+ + +RT +++AHRL+TI +A+ I ++++GKIVEKGTH +
Sbjct: 180 DEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKD 239
Query: 598 LIKDPEGPYTQLVRLQEGSKE 618
L+K G Y ++ +Q G +
Sbjct: 240 LLKL-NGEYAEMWNMQSGGND 259
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 407 bits (1048), Expect = e-128
Identities = 178/592 (30%), Positives = 307/592 (51%), Gaps = 16/592 (2%)
Query: 33 NQKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINS-FGSSDRSHVVH 91
N +L + + +I+ + S + + G I+ F +
Sbjct: 20 NPTATLRRLLGYL-RPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPR 78
Query: 92 EVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTT 151
+ + +Y + +LQ + + R+R + + R +GFFD T
Sbjct: 79 YMLILGT--IYALTS--LLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR-TPH 133
Query: 152 GEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIA 211
G++I R+ D I +G + +F + T G ++ L+LV L+ +P V+
Sbjct: 134 GDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLI 193
Query: 212 GGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAA 271
++ K Q + ++E+ +SG+ + FT E++ +EK++ + +
Sbjct: 194 TQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVG 253
Query: 272 VQQGMVSGIGLGVLMLTVIG--TYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLG 329
+ + SG+ L LM ++ + L +G L ++ GT+ I L
Sbjct: 254 TKAQIFSGV-LPPLM-NMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLN 311
Query: 330 QTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPE 389
+ S N A+A ++FE + + + D D + L ++ GEIE ++V+F Y +
Sbjct: 312 ELSNQFNMIQMALASAERIFEILDLEEEKD--DPDAVELREVRGEIEFKNVWFSY--DKK 367
Query: 390 VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWI 449
+ + H+ G ALVG +GSGK+T+++L+ RFYD D G++L+DGIDI+K++ +
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 450 REKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGE 509
R IG+V Q+ ILF+T+++EN+ YG ATD+EI+ A +L ++ FI LP+G +T+ +
Sbjct: 428 RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTD 487
Query: 510 HGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVA 569
+G LS GQ+Q +AI RA L NPKIL+LDEATS +D ++E+ +Q A+ K+M +T++++A
Sbjct: 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIA 547
Query: 570 HRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAED 621
HRL TI+NADLI V+ G+IVE G HDELI+ G Y +L Q G ++
Sbjct: 548 HRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQYGLVVEKE 598
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 405 bits (1044), Expect = e-128
Identities = 182/583 (31%), Positives = 295/583 (50%), Gaps = 20/583 (3%)
Query: 698 KRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFG-LLLSSSIRMFFEPED--KLR 754
K ++RRL +P LI I + L+ +I + F P L
Sbjct: 19 KNPTATLRRLLGYLRP-HTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLP 77
Query: 755 KDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPAN 814
+ IY + ++ + Q ++ R+R FEK+ + +FD
Sbjct: 78 RYMLILGTIYALTSLLFWL----QGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFD--RT 131
Query: 815 SSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLM- 873
G + +R+ D I +++G+S+ I T+A +I+ F N IL+ V L++ PL
Sbjct: 132 PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTV 191
Query: 874 LVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPL 933
L+ ++ K F + +++ + + + + + + F EEK M+ +++ E
Sbjct: 192 LITQIVSSQTRKYFYENQRVLGQLNGII-EEDISGLTVIKLFTREEKEMEKFDRVNESLR 250
Query: 934 KNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALG- 992
K G + I SG +V A G L T G + F +
Sbjct: 251 KVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIA-TFIGYSRQFTRP 309
Query: 993 VSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTR 1052
+++ S A SA IFEILD + + D + + L V G IE + V F Y
Sbjct: 310 LNELSNQFNMIQMALASAERIFEILDLEEEKDDP--DAVELREVRGEIEFKNVWFSY--D 365
Query: 1053 PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLS 1112
+ +++ I G+ VALVG +GSGK+T++ L+ RFYD D G +L+D I++ K K S
Sbjct: 366 KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRS 425
Query: 1113 WLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETN 1172
LR +G+V Q+ +LF+ T++ N+ YG G AT+EEI A + +++ +FI LP GYET
Sbjct: 426 SLRSSIGIVLQDTILFSTTVKENLKYGNPG-ATDEEIKEAAKLTHSDHFIKHLPEGYETV 484
Query: 1173 VGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTV 1232
+ + G LS GQ+Q +AI RA L NPKIL+LDEATS +D ++E+ +Q A+ ++M +T++
Sbjct: 485 LTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSI 544
Query: 1233 VVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
++AHRL TIKNAD+I V+++G I E G HD L++ G Y L
Sbjct: 545 IIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ-KRGFYYEL 586
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 377 bits (970), Expect = e-121
Identities = 118/267 (44%), Positives = 172/267 (64%), Gaps = 5/267 (1%)
Query: 1009 SAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSG 1068
++F++L + ++ L G IE V F Y + +++ ++ G
Sbjct: 24 DMENMFDLLKEETEVKDLPG-AGPLRFQKGRIEFENVHFSY--ADGRETLQDVSFTVMPG 80
Query: 1069 KTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLF 1128
+T+ALVG SG+GKST++ L+ RFYD SG + +D ++ + + LR +G+V Q+ VLF
Sbjct: 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF 140
Query: 1129 NETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRI 1188
N+TI NI YG+ A +E+ AA +A+ H+ I A P GY T VGERG++LSGG+KQR+
Sbjct: 141 NDTIADNIRYGRVT-AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV 199
Query: 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIA 1248
AIAR +LK P I+LLDEATSALD +ER +Q +L +V NRTT+VVAHRL+T+ NAD I
Sbjct: 200 AIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQIL 259
Query: 1249 VVKNGVIAEQGSHDALMKITDGAYASL 1275
V+K+G I E+G H+AL+ G YA +
Sbjct: 260 VIKDGCIVERGRHEALLS-RGGVYADM 285
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 370 bits (953), Expect = e-119
Identities = 120/310 (38%), Positives = 175/310 (56%), Gaps = 13/310 (4%)
Query: 328 LGQTSPCLNAFAG-------GQAAAYKMFETIKRKPKIDPYDTSG-ITLEKIEGEIELRD 379
+G + + +G MF+ +K + ++ D G L +G IE +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMFIDMENMFDLLKEETEVK--DLPGAGPLRFQKGRIEFEN 58
Query: 380 VYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGI 439
V+F Y + S V G T ALVG SG+GKST++ L+ RFYD +G + IDG
Sbjct: 59 VHFSY--ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQ 116
Query: 440 DIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKL 499
DI ++ +R IG+V Q+ +LF ++ +NI YG+ A + E+ A + A I
Sbjct: 117 DISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAF 176
Query: 500 PKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKI 559
P+G T GE G +LSGG+KQR+AIAR ILK P I+LLDEATSALD +ER +Q +L K+
Sbjct: 177 PEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV 236
Query: 560 MTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEA 619
+RTT+VVAHRL+T+ NAD I V+ G IVE+G H+ L+ G Y + +LQ+G +E
Sbjct: 237 CANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQGQEET 295
Query: 620 EDALATDADK 629
+ +
Sbjct: 296 SEDTKPQTME 305
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 360 bits (926), Expect = e-111
Identities = 159/586 (27%), Positives = 283/586 (48%), Gaps = 30/586 (5%)
Query: 47 KQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINS-FGSSDRSHVVHEVSKVAVKFLYLAA 105
AVL + + + L+ P + +++ D S V+ K + L +A
Sbjct: 22 WIFAVLAPLFMVVEVICDLSQPTLL---ARIVDEGIARGDFSLVL----KTGILMLIVAL 74
Query: 106 GTGIAAFLQVSCWMVTGERQATRIRG-LYLKTILRQDIGFFDTET-TTGEVIGRMSGDTI 163
+ + +R L+ K + T +I R++ D
Sbjct: 75 IGAVGGIGCTVFASYASQNFGADLRRDLFRKV---LSFSISNVNRFHTSSLITRLTNDVT 131
Query: 164 LIQEAMGEKVGKFIQLMS----TFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIM 219
+Q V ++++ F GG V+A++ L+ VL+ +P IV+ +
Sbjct: 132 QLQNL----VMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKG 187
Query: 220 SKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSG 279
+ + + Q + E VV + + G+R V +F E+ E + + R+ + +
Sbjct: 188 NPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIV 247
Query: 280 IGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTV---INVIMAIMTGGMSLGQTSPCLN 336
L + + V +W+G L+ G++ N +M IM SL LN
Sbjct: 248 FALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIM---FSLMMIGNILN 304
Query: 337 AFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGF 396
A+A ++ E + KP I+ + + L +EG + +V FRY + + +G
Sbjct: 305 FIVRASASAKRVLEVLNEKPAIEE-ADNALALPNVEGSVSFENVEFRYFENTD-PVLSGV 362
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLV 456
+ V G+ A++G++GSGKST+++L+ R DP+ G V +D +D++ ++LK +R I V
Sbjct: 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAV 422
Query: 457 SQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSG 516
QE +LF+ +++EN+ +G+E+ATD EI A ++A FI LP+G D+ G SG
Sbjct: 423 PQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482
Query: 517 GQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIR 576
GQKQR++IARA++K PK+L+LD+ TS++D +E+ + D L + TT ++ ++ T
Sbjct: 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL 542
Query: 577 NADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDA 622
AD I V+H+GK+ GTH EL++ + PY ++ Q G+ DA
Sbjct: 543 LADKILVLHEGKVAGFGTHKELLEHCK-PYREIYESQFGNGVMNDA 587
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 339 bits (873), Expect = e-103
Identities = 142/517 (27%), Positives = 256/517 (49%), Gaps = 25/517 (4%)
Query: 760 WALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVV---HQEISWFDDPANSS 816
++ L++ +I + F A +R F KV+ ++ F +
Sbjct: 65 TGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRF-----HT 119
Query: 817 GSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQ 876
S+ RL+ D + +++LV L +VV+ G+++A + N L+ V++ + P +++
Sbjct: 120 SSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLL 179
Query: 877 GYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNG 936
TK + +E ++V + + +R V +F EE + + K E ++
Sbjct: 180 FVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSI 239
Query: 937 VRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQV-------FKVFFALTIS 989
+ L ++ + G VLV + + G + ++ F+L +
Sbjct: 240 ISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMM- 298
Query: 990 ALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKY 1049
+ +A SA + E+L+ KP I D + L +V G++ V F+Y
Sbjct: 299 ---IGNILNFIV---RASASAKRVLEVLNEKPAI-EEADNALALPNVEGSVSFENVEFRY 351
Query: 1050 PTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF 1109
+ + S+ G VA++GE+GSGKST++ LI R DP+ G V +D +++
Sbjct: 352 FE-NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV 410
Query: 1110 KLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGY 1169
KL LR + V QE VLF+ TI+ N+ +G++ AT++EI+ A + + H+FI +LP GY
Sbjct: 411 KLKDLRGHISAVPQETVLFSGTIKENLKWGRED-ATDDEIVEAAKIAQIHDFIISLPEGY 469
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR 1229
++ V G SGGQKQR++IARA++K PK+L+LD+ TS++D +E+ + D L+R
Sbjct: 470 DSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGC 529
Query: 1230 TTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMK 1266
TT ++ ++ T AD I V+ G +A G+H L++
Sbjct: 530 TTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 7e-65
Identities = 68/290 (23%), Positives = 127/290 (43%), Gaps = 6/290 (2%)
Query: 372 EGEIELRDVYFRYPARPE-VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD 430
G++ ++D+ +Y I S + G L+G++GSGKST++S R + +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE 74
Query: 431 AGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELA 490
GE+ IDG+ + L+ R+ G++ Q+ +F+ + R+N+ +DQEI +
Sbjct: 75 -GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEV 132
Query: 491 NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER 550
I++ P LD + + G LS G KQ + +AR++L KILLLDE ++ LD + +
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 551 IVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610
I++ L + T ++ R+ + D V+ + K+ + + EL P +
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 611 RLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSRGESMRRSISRHSS 660
T ++ + ES + + S
Sbjct: 253 I-GSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMS 301
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 8e-57
Identities = 58/241 (24%), Positives = 112/241 (46%), Gaps = 6/241 (2%)
Query: 1038 GAIELRCVSFKYPTRPD-VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS 1096
G + ++ ++ KY I N+ SI G+ V L+G +GSGKST+++ R +
Sbjct: 18 GQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-E 74
Query: 1097 GHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEAS 1156
G + +D + L R+ G++ Q+ +F+ T R N+ +++EI +
Sbjct: 75 GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAA--HSDQEIWKVADEV 132
Query: 1157 NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER 1216
+ I P + + + G LS G KQ + +AR+VL KILLLDE ++ LD + +
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 1217 VVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLV 1276
+++ L++ + T ++ R+ + D V++ + + S L + +
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 1277 A 1277
Sbjct: 253 I 253
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 1e-44
Identities = 55/239 (23%), Positives = 107/239 (44%), Gaps = 18/239 (7%)
Query: 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
+ + V+ + + +++ I G+ +A+ G +G+GK++++ +I +P G
Sbjct: 5 TEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASN 1157
+ ++ SQ + TI+ NI +G E + +A
Sbjct: 64 KIKH-------------SGRISFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQ 108
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER- 1216
IS +GE G+ LSGGQ+ RI++ARAV K+ + LLD LD +E+
Sbjct: 109 LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 168
Query: 1217 VVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
+ + + ++M N+T ++V ++ +K AD I ++ G G+ L ++S
Sbjct: 169 IFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN-LQPDFSSK 226
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 2e-43
Identities = 58/241 (24%), Positives = 115/241 (47%), Gaps = 18/241 (7%)
Query: 372 EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA 431
E+ + +V + + + + G A+ G +G+GK++++ ++ +P
Sbjct: 4 TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 432 GEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEI-RTAIELA 490
G++ G +I SQ + +++ENI +G D+ R+ I+
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKAC 107
Query: 491 NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER 550
+ I K + + + GE G LSGGQ+ RI++ARA+ K+ + LLD LD +E+
Sbjct: 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167
Query: 551 -IVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQL 609
I + + K+M ++T ++V ++ ++ AD I ++H+G GT EL ++L
Sbjct: 168 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
Query: 610 V 610
+
Sbjct: 228 M 228
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 3e-44
Identities = 78/252 (30%), Positives = 126/252 (50%), Gaps = 26/252 (10%)
Query: 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
+I +R +F + + + SIP G VA+VG+ G GKS++++ + D G
Sbjct: 2 NSITVRNATFTWARSDPPTL-NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASN 1157
HV + + + V Q+ + N+++R NI +G Q E + +A
Sbjct: 61 HVAI-------------KGSVAYVPQQAWIQNDSLRENILFGCQ--LEEPYYRSVIQACA 105
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
+ LP G T +GE+GV LSGGQKQR+++ARAV N I L D+ SA+DA V
Sbjct: 106 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH---V 162
Query: 1218 VQDALERVMV------NRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGA 1271
+ E V+ N+T ++V H ++ + D+I V+ G I+E GS+ L+ DGA
Sbjct: 163 GKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA-RDGA 221
Query: 1272 YASLVALHVSSS 1283
+A + + S
Sbjct: 222 FAEFLRTYASHH 233
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 2e-41
Identities = 74/253 (29%), Positives = 124/253 (49%), Gaps = 22/253 (8%)
Query: 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
I +R+ F + + G + +P G A+VGQ G GKS+++S + D G
Sbjct: 2 NSITVRNATFTWARSDPPTL-NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 433 EVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEI-RTAIELAN 491
V I G + V Q+ + SLRENI +G + ++ R+ I+
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQ--LEEPYYRSVIQACA 105
Query: 492 AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE-SER 550
++ LP G T GE G LSGGQKQR+++ARA+ N I L D+ SA+DA +
Sbjct: 106 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165
Query: 551 IVQDALVK--IMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
I ++ + ++ ++T ++V H ++ + D+I V+ GKI E G++ EL+ +G + +
Sbjct: 166 IFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAE 224
Query: 609 LVRLQEGSKEAED 621
+R S
Sbjct: 225 FLR-TYASHHHHH 236
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 3e-44
Identities = 61/242 (25%), Positives = 115/242 (47%), Gaps = 26/242 (10%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+++ ++ + Y G ++++ G A++G +G GKST+ P +G +
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 435 LIDGIDI--KKLQLKWIREKIGLVSQEPI--LFATSLRENIAYGKENA--TDQEIRT--- 485
L D I + + +RE IG+V Q+P LF+ S+ +++++G N + EIR
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 486 -AIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
A++ DK LS GQK+R+AIA ++ PK+L+LDE T+ L
Sbjct: 126 NALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 545 DAESERIVQDALVKIMTSR--TTVVVAHRLTTI-RNADLIAVVHQGKIVEKGTHDELIKD 601
D + LV++ T ++ H + + D + V+ +G+++ +G E+ +
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
Query: 602 PE 603
E
Sbjct: 235 KE 236
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 1e-37
Identities = 57/233 (24%), Positives = 109/233 (46%), Gaps = 25/233 (10%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+++ +++ Y + + ++I G+ A++G +G GKST+ P SG +
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 1100 LLD--NIELPKFKLSWLRQQMGLVSQEPV--LFNETIRTNIAYG-KQGGATEEEIIA--- 1151
L D I+ + + LR+ +G+V Q+P LF+ ++ ++++G E+EI
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 1152 -ATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL 1210
A + + + H LS GQK+R+AIA ++ PK+L+LDE T+ L
Sbjct: 126 NALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 1211 DAESERVVQDALERVM--VNRTTVVVAHRLTTI-KNADIIAVVKNGVIAEQGS 1260
D + L + + T ++ H + + D + V+K G + QG+
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 3e-43
Identities = 74/271 (27%), Positives = 127/271 (46%), Gaps = 29/271 (10%)
Query: 375 IELRDVYFRYPARPEVQIFA--GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
IE+ +V + ++ A SL + G + G +GSGKST++ +V +P +G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 433 EVLIDGIDIKKLQLKWIREKIGLVSQEPI--LFATSLRENIAYGKEN-ATDQEIRTAIEL 489
+VL DG K IR IG+ Q P FA + + +A+ +N D++ ++
Sbjct: 63 DVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKK 119
Query: 490 A------NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSA 543
A + F D++P LSGG+K+R+AIA I+ P IL+LDE
Sbjct: 120 AMEFVGLDFDSFKDRVPF-----------FLSGGEKRRVAIASVIVHEPDILILDEPLVG 168
Query: 544 LDAESERIVQDALVKIMTSRTTVV-VAHRLTTI-RNADLIAVVHQGKIVEKGTHDELIKD 601
LD E + + + K T TV+ ++H + T+ + D + V+ +GK V GT E ++
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
Query: 602 PEGPYTQLV--RLQEGSKEAEDALATDADKL 630
+ + ++ + ED + D+L
Sbjct: 229 YDPRFFTSKMLVMRRLVLKGEDPFSMSDDEL 259
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 2e-36
Identities = 60/234 (25%), Positives = 110/234 (47%), Gaps = 26/234 (11%)
Query: 1039 AIELRCVSFKYP--TRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS 1096
IE+ VS + T + + N+ L I G+ + + G +GSGKST++ ++ +P S
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 1097 GHVLLDNIELPKFKLSWLRQQMGLVSQEPV--LFNETIRTNIAYG-KQGGATEEEIIAAT 1153
G VL D K +R+ +G+ Q P F E + +A+ K + +
Sbjct: 62 GDVLYDGERK---KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 1154 EAS-----NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATS 1208
+A + +F +P LSGG+K+R+AIA ++ P IL+LDE
Sbjct: 119 KAMEFVGLDFDSFKDRVPF-----------FLSGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 1209 ALDAESERVVQDALERV-MVNRTTVVVAHRLTTI-KNADIIAVVKNGVIAEQGS 1260
LD E + + +E+ + +T ++++H + T+ + D + V++ G G+
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 4e-43
Identities = 46/282 (16%), Positives = 107/282 (37%), Gaps = 30/282 (10%)
Query: 375 IELRDVYFRYPARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
I+L++V + E +L V G ++G +GSGK+T++ + P +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFA--TSLRENIAYGKEN--ATDQEIRTAIEL 489
+ I+G++++K+ R I + P + ++ + + +E ++
Sbjct: 60 IFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 490 AN-AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
+ + + +LS GQ + + A+ P+I+ LDE +DA
Sbjct: 115 LKLGEEILRRKLY-----------KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 549 ERIVQDALVKIMTSRTTVVVAHRLTT-IRNADLIAVVHQGKIVEK-GTHDELIKDP--EG 604
++ + + + ++V H L + A G ++ + EL++ EG
Sbjct: 164 RHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEG 221
Query: 605 PYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGS 646
+ + + + + D + L++ G+
Sbjct: 222 ERNDALLVLDIMDKKVSIVKGDLGMKFGALGSLNRIYGIIGA 263
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 2e-38
Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 1040 IELRCVSFKYPTRP-DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
I+L+ V + + N+ L + G+ V ++G +GSGK+T++ I P SG+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLF--NETIRTNIAYG-KQGGATEEEIIAATEA 1155
+ ++ +E+ K +R + + P + T+ + + G + + +A
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 1156 SN-AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAES 1214
+ + +LS GQ + + A+ P+I+ LDE +DA
Sbjct: 115 LKLGEEILRRKLY-----------KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 1215 ERVVQDALERVMVNRTTVVVAHRLTT-IKNADIIAVVKNGVIAEQ 1258
V+ ++ + ++V H L + A G +
Sbjct: 164 RHVISRYIKE--YGKEGILVTHELDMLNLYKEYKAYFLVGNRLQG 206
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 2e-41
Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 18/240 (7%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI 1104
+SF + + +++ I G+ +A+ G +G+GK++++ +I +P G +
Sbjct: 41 LSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH--- 97
Query: 1105 ELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISA 1164
++ SQ + TI+ NI G E + +A IS
Sbjct: 98 ----------SGRISFCSQNSWIMPGTIKENI-IGVS--YDEYRYRSVIKACQLEEDISK 144
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV-QDALE 1223
+GE G+ LSGGQ+ RI++ARAV K+ + LLD LD +E+ + + +
Sbjct: 145 FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC 204
Query: 1224 RVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVSSS 1283
++M N+T ++V ++ +K AD I ++ G G+ L ++S + S
Sbjct: 205 KLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN-LRPDFSSKLMGCDSFD 263
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 1e-40
Identities = 56/274 (20%), Positives = 116/274 (42%), Gaps = 24/274 (8%)
Query: 350 ETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALV 409
E + + + + + + + + + G A+
Sbjct: 16 EGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP-----VLKDINFKIERGQLLAVA 70
Query: 410 GQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRE 469
G +G+GK++++ ++ +P G++ G +I SQ + +++E
Sbjct: 71 GSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKE 117
Query: 470 NIAYGKENATDQEI-RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAI 528
NI G D+ R+ I+ + I K + + + GE G LSGGQ+ RI++ARA+
Sbjct: 118 NI-IGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAV 174
Query: 529 LKNPKILLLDEATSALDAESER-IVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQG 587
K+ + LLD LD +E+ I + + K+M ++T ++V ++ ++ AD I ++H+G
Sbjct: 175 YKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
Query: 588 KIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAED 621
GT EL ++ + + +
Sbjct: 235 SSYFYGTFSELQNL-RPDFSSKLMGCDSFDQFSA 267
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 3e-41
Identities = 79/274 (28%), Positives = 134/274 (48%), Gaps = 18/274 (6%)
Query: 375 IELRDVYFRYPAR-PEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
I+L ++ + +Q SLHVP+G ++G SG+GKST+I V P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 434 VLIDGIDIKKL---QLKWIREKIGLVSQEPILFAT-SLRENIAYGKENA--TDQEIRTAI 487
VL+DG ++ L +L R +IG++ Q L ++ ++ N+A E E++
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVK--- 141
Query: 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
+ + + GL + + LSGGQKQR+AIARA+ NPK+LL D+ATSALD
Sbjct: 142 --RRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 548 SERIVQDALVKI--MTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEG 604
+ R + + L I T +++ H + ++ D +AV+ G+++E+ T E+ P+
Sbjct: 198 TTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKT 257
Query: 605 PYTQ-LVRLQEGSKEAEDALATDADKLDSSFDIL 637
P Q ++ ED + + +
Sbjct: 258 PLAQKFIQSTLHLDIPEDYQERLQAEPFTDCVPM 291
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-34
Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 42/243 (17%)
Query: 1040 IELRCVSFKYPTR-PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
I+L ++ + +Q N+ L +P+G+ ++G SG+GKST+I + P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 1099 VLLDNIELPKFK---LSWLRQQMGLVSQEPVLFN----ETIRTNIAYG-KQGGATEEEII 1150
VL+D EL L+ R+Q+G++ Q FN T+ N+A + ++E+
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQH---FNLLSSRTVFGNVALPLELDNTPKDEVK 141
Query: 1151 A-ATE-------ASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILL 1202
TE ++ S LSGGQKQR+AIARA+ NPK+LL
Sbjct: 142 RRVTELLSLVGLGDKHDSYPS---------------NLSGGQKQRVAIARALASNPKVLL 186
Query: 1203 LDEATSALDAESERVVQDALERVMVNR----TTVVVAHRLTTIKN-ADIIAVVKNGVIAE 1257
D+ATSALD + R + + L+ +NR T +++ H + +K D +AV+ NG + E
Sbjct: 187 CDQATSALDPATTRSILELLKD--INRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 244
Query: 1258 QGS 1260
Q +
Sbjct: 245 QDT 247
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 148 bits (377), Expect = 5e-40
Identities = 48/238 (20%), Positives = 102/238 (42%), Gaps = 15/238 (6%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
I+L + + I S + G L G +G+GK+T+++++ + +G V
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 435 LIDGIDIKKL--QLKWIREKIGLVSQE---PILFATSLRENIAYGKENATD-QEIRTAIE 488
+ G K+ + +R+ IG VS + + + G + +
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 489 LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
A + + + G+ A ++ LS G+KQR+ IARA++ P++L+LDE + LD +
Sbjct: 139 RNEAHQLLKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIA 196
Query: 549 ERIVQDALVKIM---TSRTTVVVAHRLTTIRNA-DLIAVVHQGKIVEKGTHDELIKDP 602
+ L + + + V H + I I ++ G+ +++G ++++
Sbjct: 197 RESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSE 254
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-33
Identities = 55/242 (22%), Positives = 101/242 (41%), Gaps = 26/242 (10%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
I+L + + I + + I G L G +G+GK+T++ ++ + SG
Sbjct: 21 LIQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT 77
Query: 1099 VLLDNIELPKFKLSW--LRQQMGLVSQE---PVLFNETIRTNI---AYGKQG---GATEE 1147
V L K S +RQ +G VS E + + A+ G +E
Sbjct: 78 VNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDE 137
Query: 1148 EIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEAT 1207
A + + + G + LS G+KQR+ IARA++ P++L+LDE
Sbjct: 138 IRNEAHQL------LKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPA 189
Query: 1208 SALDAESERVVQDALERVMVNRTT---VVVAHRLTTIKNA-DIIAVVKNGVIAEQGSHDA 1263
+ LD + + L+ + + T + V H + I I ++K+G +QG+ +
Sbjct: 190 AGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVED 249
Query: 1264 LM 1265
++
Sbjct: 250 IL 251
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 3e-36
Identities = 79/244 (32%), Positives = 122/244 (50%), Gaps = 20/244 (8%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
I++ + + +++ G ++H+ G ++G SGSGKST + + D D GE+
Sbjct: 25 IDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 435 LIDGIDI--KKLQLKWIREKIGLVSQEPILFA-TSLRENIAYGKENATDQEIRTAIELAN 491
+IDGI++ K L +RE++G+V Q LF ++ NI A A
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA- 140
Query: 492 AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI 551
+ +DK+ GL A + LSGGQ QR+AIARA+ PKI+L DE TSALD E +
Sbjct: 141 -MELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---M 194
Query: 552 VQDALVKIMTS-----RTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGP 605
V + L +M T VVV H + R D + + G I+E+G ++L P+
Sbjct: 195 VGEVL-SVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHE 253
Query: 606 YTQL 609
T+
Sbjct: 254 RTKA 257
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 5e-30
Identities = 73/226 (32%), Positives = 107/226 (47%), Gaps = 38/226 (16%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL--PKFKL 1111
+++ + + + I G+ V ++G SGSGKST + + D D G +++D I L L
Sbjct: 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNL 95
Query: 1112 SWLRQQMGLVSQEPVLF-NETIRTNIAYG--KQGGATEEEIIA-ATE-------ASNAHN 1160
+ +R+++G+V Q LF + T+ NI K E+ A A E AH
Sbjct: 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA 155
Query: 1161 FISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQD 1220
+ P LSGGQ QR+AIARA+ PKI+L DE TSALD E +V +
Sbjct: 156 Y----PD-----------SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGE 197
Query: 1221 ALERVMVN-----RTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
L VM T VVV H + + D + + G I E+G
Sbjct: 198 VLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGK 242
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 5e-36
Identities = 77/261 (29%), Positives = 129/261 (49%), Gaps = 44/261 (16%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+ + D++ RY ++ G SL +G +++G SGSGKST + + P G +
Sbjct: 7 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 435 LIDGIDI-------------KKLQLKWIREKIGLVSQEPILFA--TSLRENIAYG----K 475
+++G +I K QL+ +R ++ +V Q L++ T L EN+
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVL-ENVMEAPIQVL 122
Query: 476 ENATDQEIRTAIELANAAKFIDKLPK-GL-DTMAGEHGTQLSGGQKQRIAIARAILKNPK 533
+ A++ L K G+ + G++ LSGGQ+QR++IARA+ P
Sbjct: 123 GLSKHDARERALKY---------LAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPD 173
Query: 534 ILLLDEATSALDAESERIVQDALVKIMTS-----RTTVVVAHRLTTIRN-ADLIAVVHQG 587
+LL DE TSALD E +V + L +IM +T VVV H + R+ + + +HQG
Sbjct: 174 VLLFDEPTSALDPE---LVGEVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 229
Query: 588 KIVEKGTHDELIKDPEGPYTQ 608
KI E+G +++ +P+ P Q
Sbjct: 230 KIEEEGDPEQVFGNPQSPRLQ 250
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 4e-28
Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 46/236 (19%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL------- 1106
++ + + L +G ++++G SGSGKST + I P G ++++ +
Sbjct: 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77
Query: 1107 ------PKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYG--KQGGATEEEIIAATEASN 1157
K +L LR ++ +V Q L+ + T+ N+ + G ++ +
Sbjct: 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALK-- 135
Query: 1158 AHNFISALPHGYETNVG--ERG-----VQLSGGQKQRIAIARAVLKNPKILLLDEATSAL 1210
Y VG ER V LSGGQ+QR++IARA+ P +LL DE TSAL
Sbjct: 136 -----------YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 184
Query: 1211 DAESERVVQDALERVMVN-----RTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
D E +V + L R+M +T VVV H + ++ + + + G I E+G
Sbjct: 185 DPE---LVGEVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 1e-34
Identities = 61/256 (23%), Positives = 117/256 (45%), Gaps = 25/256 (9%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+ ++D+ R + ++ G S + G L+G +G+GK+T + ++ P +G V
Sbjct: 16 VVVKDLRKRIGKKEILK---GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFAT-SLRENIA-----YG-KENATDQEIRTAI 487
+ G ++ + + +R+ I + +E + E + Y + ++ + A
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 131
Query: 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
E+A + I S G +++ IARA++ NP++ +LDE TS LD
Sbjct: 132 EIAGLGEKIKDRVSTY-----------SKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 180
Query: 548 SERIVQDALVKIMTSRTTVVV-AHRLTTI-RNADLIAVVHQGKIVEKGTHDELIKDPEGP 605
+ R V+ L + T++V +H + + D IA++H G IVE GT +EL K+
Sbjct: 181 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL-KERYKA 239
Query: 606 YTQLVRLQEGSKEAED 621
+E K +E+
Sbjct: 240 QNIEEVFEEVVKCSEN 255
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 2e-22
Identities = 55/245 (22%), Positives = 101/245 (41%), Gaps = 33/245 (13%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
A+ ++ + + +I + + I G+ L+G +G+GK+T + +I P SG
Sbjct: 15 AVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 71
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIA-----YGKQGGATEEEIIAA 1152
V + + + +R+ + + +E + + Y EE + A
Sbjct: 72 VTVFGKNVVEEPHE-VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA 130
Query: 1153 TEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
TE + I Y S G +++ IARA++ NP++ +LDE TS LD
Sbjct: 131 TEIAGLGEKIKDRVSTY-----------SKGMVRKLLIARALMVNPRLAILDEPTSGLDV 179
Query: 1213 ESERVVQDALERVMVNRTTVVV-------AHRLTTIKNADIIAVVKNGVIAEQGSHDALM 1265
+ R V+ L++ T++V L D IA++ NG I E G+ + L
Sbjct: 180 LNAREVRKILKQASQEGLTILVSSHNMLEVEFL-----CDRIALIHNGTIVETGTVEELK 234
Query: 1266 KITDG 1270
+
Sbjct: 235 ERYKA 239
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 129 bits (328), Expect = 6e-34
Identities = 69/203 (33%), Positives = 102/203 (50%), Gaps = 27/203 (13%)
Query: 407 ALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFA-T 465
L+G +G+GKS + L+ PD GEV ++G DI L + R IG V Q+ LF
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHL 85
Query: 466 SLRENIAYGKENATDQEIRT----AIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQR 521
S+ NIAYG N E E A +D+ P +LSGG++QR
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-----------RLSGGERQR 134
Query: 522 IAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR--TTVVVAH----RLTTI 575
+A+ARA++ P++LLLDE SA+D +++ ++ + L + + V H
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML- 193
Query: 576 RNADLIAVVHQGKIVEKGTHDEL 598
AD +AV+ G+IVEKG EL
Sbjct: 194 --ADEVAVMLNGRIVEKGKLKEL 214
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 1063 LSIPSGKT-VALVGESGSGKSTVIALIERFYDPDSGHVLLDNIE---LPKFKLSWLRQQM 1118
+ G+ L+G +G+GKS + LI PD G V L+ + LP + + +
Sbjct: 18 VDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER-----RGI 72
Query: 1119 GLVSQEPVLF-NETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERG 1177
G V Q+ LF + ++ NIAYG + E E + + H + +R
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAE----KLGIAH-----LLDRK 123
Query: 1178 V-QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVV 1234
+LSGG++QR+A+ARA++ P++LLLDE SA+D +++ V+ + L V + + V
Sbjct: 124 PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV 183
Query: 1235 AH----RLTTIKNADIIAVVKNGVIAEQGS 1260
H AD +AV+ NG I E+G
Sbjct: 184 THDLIEAAML---ADEVAVMLNGRIVEKGK 210
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 2e-33
Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 32/239 (13%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+ + + + P + SL + G ++G SG GK+T++ + F PD+GE+
Sbjct: 5 LHIGHLSKSFQNTPVLN---DISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 435 LIDGIDIKKLQLKWIREK--IGLVSQEPILFA-TSLRENIAYG--KENATDQEIRT---- 485
+ G I + +G + QE +LF ++ NIAYG + R
Sbjct: 62 SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEA 121
Query: 486 AIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALD 545
+EL ++ + P +LSGGQ+QR A+ARA+ +P+++LLDE SALD
Sbjct: 122 MLELTGISELAGRYPH-----------ELSGGQQQRAALARALAPDPELILLDEPFSALD 170
Query: 546 AESERIVQDALVKIMTSR--TTVVVAH----RLTTIRNADLIAVVHQGKIVEKGTHDEL 598
+ R +++ ++ + + + V V+H L AD IAV+ QG+I++ + EL
Sbjct: 171 EQLRRQIREDMIAALRANGKSAVFVSHDREEALQY---ADRIAVMKQGRILQTASPHEL 226
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 3e-29
Identities = 70/236 (29%), Positives = 114/236 (48%), Gaps = 31/236 (13%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
A+ + +S + + + ++ LS+ G+ + ++G SG GK+T++ + F PDSG
Sbjct: 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Query: 1099 VLLD--NIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYG-KQGGATEEEIIAATE 1154
+ L I L +++G + QE VLF + T+ NIAYG G + E
Sbjct: 61 ISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE 120
Query: 1155 ASNA----HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL 1210
A PH +LSGGQ+QR A+ARA+ +P+++LLDE SAL
Sbjct: 121 AMLELTGISELAGRYPH-----------ELSGGQQQRAALARALAPDPELILLDEPFSAL 169
Query: 1211 DAESERVVQDALERVM--VNRTTVVVAH----RLTTIKNADIIAVVKNGVIAEQGS 1260
D + R +++ + + ++ V V+H L AD IAV+K G I + S
Sbjct: 170 DEQLRRQIREDMIAALRANGKSAVFVSHDREEALQY---ADRIAVMKQGRILQTAS 222
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 3e-33
Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 31/245 (12%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE V YP + G S + G L+G SGSGK+T++ L+ P G+V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIAYG------KENATDQEIRTAI 487
I G + L + + +GLV Q LF ++ +N+++G ++ D +R +
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
+ ++ P +LSGGQ+QR+A+ARA+ P++LL DE +A+D +
Sbjct: 131 RFMRLESYANRFP-----------HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
Query: 548 SERIVQDALVKI--MTSRTTVVVAH----RLTTIRNADLIAVVHQGKIVEKGTHDELIKD 601
R ++ + ++ T+V V H L AD + V+H+G + + GT +E+ +
Sbjct: 180 IRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV---ADRVLVLHEGNVEQFGTPEEVYEK 236
Query: 602 PEGPY 606
P +
Sbjct: 237 PGTLF 241
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 1e-29
Identities = 69/237 (29%), Positives = 112/237 (47%), Gaps = 36/237 (15%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
IE V YP + R + I G+ V L+G SGSGK+T++ LI P G
Sbjct: 14 TIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD 71
Query: 1099 VLLDNIE---LPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYG-KQGGATEEEIIA-- 1151
V + LP K R +GLV Q LF + T+ N+++G ++ ++E+ A
Sbjct: 72 VWIGGKRVTDLPPQK----R-NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARV 126
Query: 1152 --ATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSA 1209
++ + PH +LSGGQ+QR+A+ARA+ P++LL DE +A
Sbjct: 127 RELLRFMRLESYANRFPH-----------ELSGGQQQRVALARALAPRPQVLLFDEPFAA 175
Query: 1210 LDAESERVVQDALERV--MVNRTTVVVAH----RLTTIKNADIIAVVKNGVIAEQGS 1260
+D + R ++ + +V + T+V V H L AD + V+ G + + G+
Sbjct: 176 IDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV---ADRVLVLHEGNVEQFGT 229
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 6e-33
Identities = 48/246 (19%), Positives = 84/246 (34%), Gaps = 31/246 (12%)
Query: 1017 LDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGE 1076
++ D L + + S K + + + ++GE
Sbjct: 329 FRTEALQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSEILVMMGE 386
Query: 1077 SGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPV--LFNETIRT 1134
+G+GK+T+I L+ PD G + PK +S Q++ V LF + IR
Sbjct: 387 NGTGKTTLIKLLAGALKPDEGQDI------PKLNVSMKPQKIAPKFPGTVRQLFFKKIRG 440
Query: 1135 NIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAV 1194
+ + + I LSGG+ QR+AI A+
Sbjct: 441 QFL-------NPQFQTDVVKPLRIDDIIDQEVQ-----------HLSGGELQRVAIVLAL 482
Query: 1195 LKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVK 1251
I L+DE ++ LD+E + + R + +T +V H AD + V +
Sbjct: 483 GIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFE 542
Query: 1252 NGVIAE 1257
Sbjct: 543 GIPSKN 548
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 7e-33
Identities = 49/248 (19%), Positives = 86/248 (34%), Gaps = 33/248 (13%)
Query: 372 EGEIELRDVYFRYPA---RPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYD 428
+ + + F YP+ + ++G++G+GK+T+I L+
Sbjct: 344 DLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK 403
Query: 429 PDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPI--LFATSLRENIAYGKENATDQEIRTA 486
PD G+ I KL + +KI + LF +R + Q
Sbjct: 404 PDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRG------QFLNPQFQTDV 451
Query: 487 IELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 546
++ ID+ + LSGG+ QR+AI A+ I L+DE ++ LD+
Sbjct: 452 VKPLRIDDIIDQEVQ-----------HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500
Query: 547 ESERIVQDALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGKIVE--KGTHDELIKD 601
E I + + + T +V H AD + V + L+
Sbjct: 501 EQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560
Query: 602 PEGPYTQL 609
L
Sbjct: 561 CNRFLKNL 568
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 3e-28
Identities = 50/270 (18%), Positives = 99/270 (36%), Gaps = 32/270 (11%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLH----VPSGTTAALVGQSGSGKSTVISLV------ 423
V RY A F LH G LVG +G GKST + ++
Sbjct: 77 TNLEAHVTHRYSAN-------SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKP 129
Query: 424 --ERFYDPDAGEVLIDGIDIKKLQ---LKWIREKIGLVSQEPI--LFATSLRENIAYGKE 476
RF DP + +I +LQ K + + I + + +++ + E
Sbjct: 130 NLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGE 189
Query: 477 NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILL 536
+ ++ ++ K + L+ + +LSGG+ QR AI + ++ + +
Sbjct: 190 LLKLRMEKSPEDVKRYIKILQ-----LENVLKRDIEKLSGGELQRFAIGMSCVQEADVYM 244
Query: 537 LDEATSALDAESERIVQDALVKIMTSRTTVVVA-HRLTTIRN-ADLIAVVHQGKIVE-KG 593
DE +S LD + + ++ V+ H L+ + +D + +++ V
Sbjct: 245 FDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVV 304
Query: 594 THDELIKDPEGPYTQLVRLQEGSKEAEDAL 623
T +++ + E + +AL
Sbjct: 305 TLPASVREGINIFLDGHIPAENLRFRTEAL 334
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-27
Identities = 40/233 (17%), Positives = 82/233 (35%), Gaps = 34/233 (14%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALI--------ERFYDPDS 1096
V+ +Y ++ R + G+ + LVG +G GKST + ++ RF DP
Sbjct: 83 VTHRYSAN-SFKLHRLP--TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPE 139
Query: 1097 GHVLLDNI---ELPKFKLSWLRQQMGLVSQEPV--LFNETIRTNIAY-GKQGGATEEEII 1150
++ EL + L + + + I+ + G+ E+
Sbjct: 140 WQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSP 199
Query: 1151 AATEAS----NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEA 1206
+ N + +LSGG+ QR AI + ++ + + DE
Sbjct: 200 EDVKRYIKILQLENVLKRDIE-----------KLSGGELQRFAIGMSCVQEADVYMFDEP 248
Query: 1207 TSALDAESERVVQDALERVMVNRTTVVVA-HRLTTIKN-ADIIAVVKNGVIAE 1257
+S LD + + ++ V+ H L+ + +D + ++
Sbjct: 249 SSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 2e-32
Identities = 43/207 (20%), Positives = 90/207 (43%), Gaps = 29/207 (14%)
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454
++ + G G +G GK+T++ + + P GE++ +G+ I K ++ KI
Sbjct: 27 RITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF 81
Query: 455 LVSQEPILFAT-SLRENIA-----YGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAG 508
+ +E I+ S+ + + YG + EI A+E KL
Sbjct: 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVN-KNEIMDALESVEVLDLKKKL--------- 131
Query: 509 EHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVV 568
+LS G +R+ +A +L N +I +LD+ A+D +S+ V ++++I+ + V++
Sbjct: 132 ---GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII 188
Query: 569 AHRLTT--IRNADLIAVVHQGKIVEKG 593
+ + D+ +H+
Sbjct: 189 ---SSREELSYCDVNENLHKYSTKIDK 212
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 107 bits (271), Expect = 1e-26
Identities = 38/230 (16%), Positives = 97/230 (42%), Gaps = 37/230 (16%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
+E+R +S Y D + + ++I G V G +G GK+T++ I + P G
Sbjct: 10 KLEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIA-----YGKQGGATE-EEIIA 1151
++ + + + K ++ ++ + +E ++ + ++ + YG + E + +
Sbjct: 66 IIYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALE 120
Query: 1152 ATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
+ E + + +LS G +R+ +A +L N +I +LD+ A+D
Sbjct: 121 SVEVLDLKKKLG---------------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165
Query: 1212 AESERVVQDALERVMVNRTTVVVAHRLTT--IKNADIIAVVKNG-VIAEQ 1258
+S+ V ++ ++ + V++ + + D+ + ++
Sbjct: 166 EDSKHKVLKSILEILKEKGIVII---SSREELSYCDVNENLHKYSTKIDK 212
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 5e-32
Identities = 72/245 (29%), Positives = 116/245 (47%), Gaps = 29/245 (11%)
Query: 375 IELRDVYFRYPA-RPEVQIFAGFSLHVPSGTTAALVGQSGSGKST---VISLVERFYDPD 430
++L++V Y + +L++ G +++G SGSGKST +I +++ P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 431 AGEVLIDGIDIKKL---QLKWIR-EKIGLVSQEPILFA-TSLRENIA----YGKENATDQ 481
GEV ID I L +L IR +KIG V Q+ L + EN+ + A
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 482 EIRTAIELANAAKFIDKLPKGLDTMAGEHG-TQLSGGQKQRIAIARAILKNPKILLLDEA 540
E R A + + L+ H QLSGGQ+QR+AIARA+ NP I+L D+
Sbjct: 119 EERRKR----ALECLKMA--ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 541 TSALDAESERIVQDALVKI--MTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDEL 598
T ALD+++ + L K+ +T VVV H + R + I + G++ +E
Sbjct: 173 TWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER----EEK 228
Query: 599 IKDPE 603
++ +
Sbjct: 229 LRGFD 233
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 1e-25
Identities = 70/243 (28%), Positives = 117/243 (48%), Gaps = 44/243 (18%)
Query: 1040 IELRCVSFKYPT-RPDVQIFRNLCLSIPSGKTVALVGESGSGKST---VIALIERFYDPD 1095
++L+ V+ Y + +N+ L+I G+ V+++G SGSGKST +I +++ P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 1096 SGHVLLDNIE---LPKFKLSWLR-QQMGLVSQEPVLFN----ETIRTNIA----YGKQGG 1143
G V +DNI+ L +L+ +R ++G V Q+ FN T N+ + +G
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ---FNLIPLLTALENVELPLIFKYRGA 115
Query: 1144 ATEEEIIAATEASNAHNFISALPHGYETNVG--ERGV-----QLSGGQKQRIAIARAVLK 1196
+ EE L ER QLSGGQ+QR+AIARA+
Sbjct: 116 MSGEERRKRALE--------CL-----KMAELEERFANHKPNQLSGGQQQRVAIARALAN 162
Query: 1197 NPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKNADIIAVVKNGV 1254
NP I+L D+ T ALD+++ + L+++ +T VVV H + + + I +K+G
Sbjct: 163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE 222
Query: 1255 IAE 1257
+
Sbjct: 223 VER 225
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-31
Identities = 48/302 (15%), Positives = 108/302 (35%), Gaps = 37/302 (12%)
Query: 350 ETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALV 409
E +K +P + ++ + +++ + + + + + G ++
Sbjct: 241 ENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGIL 300
Query: 410 GQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEP-----ILFA 464
G +G GK+T ++ D G V + + K +
Sbjct: 301 GPNGIGKTTFARILVGEITADEGSVTPEKQILSY--------KPQRIFPNYDGTVQQYLE 352
Query: 465 TSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAI 524
+ ++ + + + + N + ++ LSGG+ Q++ I
Sbjct: 353 NASKDAL-----STSSWFFEEVTKRLNLHRLLESNVN-----------DLSGGELQKLYI 396
Query: 525 ARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR--TTVVVAHRLTTIRN-ADLI 581
A + K + +LD+ +S LD E IV A+ ++ R T ++ H L+ AD I
Sbjct: 397 AATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRI 456
Query: 582 AVVHQGKIVEKG--THDELIKDPEGPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDK 639
+V +G+ + G T +K + + L+ + + +K+ S D + K
Sbjct: 457 -IVFKGEPEKAGLATSPVTLKTGMNEFLR--ELEVTFRRDAETGRPRVNKIGSYLDRVQK 513
Query: 640 AM 641
Sbjct: 514 ER 515
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 3e-28
Identities = 44/212 (20%), Positives = 81/212 (38%), Gaps = 26/212 (12%)
Query: 1063 LSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVS 1122
G+ + ++G +G GK+T ++ D G V + L + Q +
Sbjct: 289 GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY------KPQR--IF 340
Query: 1123 QEP-VLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLS 1181
+ + + E + + N H + + + LS
Sbjct: 341 PNYDGTVQQYLENASKDALSTSSWFFEEVT--KRLNLHRLLESNVN-----------DLS 387
Query: 1182 GGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR--TTVVVAHRLT 1239
GG+ Q++ IA + K + +LD+ +S LD E +V A++RV R T ++ H L+
Sbjct: 388 GGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS 447
Query: 1240 TIKN-ADIIAVVKNGVIAEQGSHDALMKITDG 1270
AD I V K G + G + + + G
Sbjct: 448 IHDYIADRIIVFK-GEPEKAGLATSPVTLKTG 478
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-27
Identities = 45/226 (19%), Positives = 91/226 (40%), Gaps = 22/226 (9%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIP-SGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDN 1103
V +Y V F+ L P + + ++G++G GK+TV+ ++ P+ G +
Sbjct: 5 VIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFG-----D 55
Query: 1104 IELPKFKLSWLRQ----QMGLVSQEP--VLFN--ETIRTNIAYGKQGGATEEEIIAATEA 1155
K L++ ++ +E I+ K T EI+ +
Sbjct: 56 PNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE 115
Query: 1156 SNAHNFISALPHGYETNVGERGV-QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAES 1214
+ + L + TN+ + LSGG QR+ +A ++L+ + + D+ +S LD
Sbjct: 116 RGKKDEVKELLN--MTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRE 173
Query: 1215 ERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 1259
+ A+ ++ N+ +VV H L + D+I ++
Sbjct: 174 RMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGR 219
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 3e-27
Identities = 50/251 (19%), Positives = 96/251 (38%), Gaps = 38/251 (15%)
Query: 378 RDVYFRYPARPEVQIFAGFSLHVP-SGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLI 436
+V RY +V F F L P + T ++G++G GK+TV+ ++ P+ G+
Sbjct: 3 GEVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD--P 56
Query: 437 DGIDIKKLQLKWIR-EKIGLVSQEP----------------ILFATSLRENIAYGKENAT 479
+ K LK R ++I +E N K +
Sbjct: 57 NSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDER 116
Query: 480 DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDE 539
++ EL N +K LSGG QR+ +A ++L+ + + D+
Sbjct: 117 GKKDE-VKELLNMTNLWNKDAN-----------ILSGGGLQRLLVAASLLREADVYIFDQ 164
Query: 540 ATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKG-THDE 597
+S LD + A+ +++ ++ +VV H L + DLI +++ V +
Sbjct: 165 PSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSY 224
Query: 598 LIKDPEGPYTQ 608
+ + +
Sbjct: 225 AARVGINNFLK 235
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 3e-31
Identities = 56/247 (22%), Positives = 98/247 (39%), Gaps = 33/247 (13%)
Query: 379 DVYFRYPARPEVQIFAGFSLH----VPSGTTAALVGQSGSGKSTVIS-----LVERFYD- 428
D RY F L+ V G +VG +G+GKST + L+
Sbjct: 26 DCVHRYGVN-------AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD 78
Query: 429 PDAGEVLIDGIDIKKLQLKWIREKIGLVS---QEPILFATSLRENIAYGKENATDQEIRT 485
D+ + +I +LQ + + K G + + L GK + ++
Sbjct: 79 NDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQY---VDLIPKAVKGKVI---ELLKK 132
Query: 486 AIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALD 545
A E + + L L+ + LSGG+ QR+AIA A+L+N DE +S LD
Sbjct: 133 ADETGKLEEVVKAL--ELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLD 190
Query: 546 AESERIVQDALVKIMTSRTTVVVA-HRLTTIRN-ADLIAVVHQGKIVEKG--THDELIKD 601
A+ ++ +V+V H L + +D+I VV+ G+ G + + ++
Sbjct: 191 IRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVY-GEPGVYGIFSQPKGTRN 249
Query: 602 PEGPYTQ 608
+ +
Sbjct: 250 GINEFLR 256
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 3e-30
Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 29/234 (12%)
Query: 366 ITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVER 425
T E++E E E Y R + G +VG +G GK+T + ++
Sbjct: 275 KTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAG 334
Query: 426 FYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPI--LFATSLRENIAYGKENATDQEI 483
+P G++ D K Q I + + L + + ++
Sbjct: 335 VEEPTEGKIEWDLTVAYKPQ------YIKADYEGTVYELLSKIDAS------KLNSNFYK 382
Query: 484 RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSA 543
++ D+ +LSGG+ QR+AIA +L++ I LLDE ++
Sbjct: 383 TELLKPLGIIDLYDREVN-----------ELSGGELQRVAIAATLLRDADIYLLDEPSAY 431
Query: 544 LDAESERIVQDALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGT 594
LD E V A+ +M T +VV H + I +D + V +G+ + G
Sbjct: 432 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF-EGEPGKYGR 484
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-27
Identities = 47/213 (22%), Positives = 91/213 (42%), Gaps = 30/213 (14%)
Query: 1063 LSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVS 1122
I G+ + +VG +G GK+T + ++ +P G + D +++ Q +
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL------TVAYKPQYIKADY 360
Query: 1123 QEPV--LFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQL 1180
+ V L ++ + + + E++ + + + +L
Sbjct: 361 EGTVYELLSKIDASKL----NSNFYKTELL---KPLGIIDLYDREVN-----------EL 402
Query: 1181 SGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRL 1238
SGG+ QR+AIA +L++ I LLDE ++ LD E V A+ +M +T +VV H +
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 462
Query: 1239 TTIKN-ADIIAVVKNGVIAEQGSHDALMKITDG 1270
I +D + V + G + G M + +G
Sbjct: 463 LMIDYVSDRLMVFE-GEPGKYGRALPPMGMREG 494
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-25
Identities = 55/210 (26%), Positives = 83/210 (39%), Gaps = 25/210 (11%)
Query: 1063 LSIPSGKTVALVGESGSGKSTVI-----ALIERFYD-PDSGHVLLDNI---ELPKFKLSW 1113
+ G V +VG +G+GKST + LI DS ++ EL +
Sbjct: 42 PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKL 101
Query: 1114 LRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISA--LPHGYET 1171
++ V + + + I GK E + A E + A L + E
Sbjct: 102 KNGEIRPVVKPQ--YVDLIPK-AVKGKVI----ELLKKADETGKLEEVVKALELENVLER 154
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTT 1231
+ LSGG+ QR+AIA A+L+N DE +S LD A+ R+ +
Sbjct: 155 EIQ----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKS 210
Query: 1232 VVVA-HRLTTIKN-ADIIAVVKNGVIAEQG 1259
V+V H L + +DII VV G G
Sbjct: 211 VLVVEHDLAVLDYLSDIIHVVY-GEPGVYG 239
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 8e-31
Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 28/230 (12%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKST---VISLVERFYDPDA 431
+ ++ +I G SL V G +++G SGSGKST ++ L++ P
Sbjct: 5 LRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTE 58
Query: 432 GEVLIDGIDIKKL---QLKWIR-EKIGLVSQEPILFA-TSLRENIA----YGKENATDQE 482
G+V ++G ++ +L +R K+G V Q L + EN+ + + +
Sbjct: 59 GKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK 118
Query: 483 IRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATS 542
R + +L GL +LSGG++QR+AIARA+ P +L DE T
Sbjct: 119 ER-------GEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTG 169
Query: 543 ALDAESERIVQDALVKIMTS-RTTVVVAHRLTTIRNADLIAVVHQGKIVE 591
LD+ + + V D +KI + V+V H + GK+V
Sbjct: 170 NLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 7e-24
Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 35/235 (14%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKST---VIALIERFYDPDS 1096
+ + +I + + LS+ G+ V+++G SGSGKST ++ L++ P
Sbjct: 5 LRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTE 58
Query: 1097 GHVLLDNIELPKF---KLSWLR-QQMGLVSQEPVLFN----ETIRTNIA----YGKQGGA 1144
G V L+ E+ +LS LR +++G V Q T N+ +
Sbjct: 59 GKVFLEGKEVDYTNEKELSLLRNRKLGFVFQF---HYLIPELTALENVIVPMLKMGKPKK 115
Query: 1145 TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLD 1204
+E +S L G + + +LSGG++QR+AIARA+ P +L D
Sbjct: 116 EAKER--------GEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFAD 165
Query: 1205 EATSALDAESERVVQDALERV-MVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQ 1258
E T LD+ + + V D ++ + V+V H + +K+G + +
Sbjct: 166 EPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-30
Identities = 53/237 (22%), Positives = 99/237 (41%), Gaps = 32/237 (13%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
++L+DV S V +G LVG +G+GKST+++ + G +
Sbjct: 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 56
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPIL-FATSLRENIAYGKENATDQEI-RTAIELANA 492
G ++ + +SQ+ FAT + + + + T E+
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-- 114
Query: 493 AKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAIL-------KNPKILLLDEATSALD 545
LD G QLSGG+ QR+ +A +L ++LLLDE ++LD
Sbjct: 115 ---------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 165
Query: 546 AESERIVQDALVKIMTS--RTTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELI 599
+ + D ++ ++ V+ +H L T+R+A ++ GK++ G +E++
Sbjct: 166 VAQQSAL-DKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 46/216 (21%), Positives = 83/216 (38%), Gaps = 24/216 (11%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLR 1115
L + +G+ + LVG +G+GKST++A + G + L + + L
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLA 72
Query: 1116 QQMGLVSQEPVL-FNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVG 1174
+SQ+ F + + + E + A +
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK------------L 120
Query: 1175 ERGV-QLSGGQKQRIAIARAVL-------KNPKILLLDEATSALD-AESERVVQDALERV 1225
R QLSGG+ QR+ +A VL ++LLLDE ++LD A+ + +
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALS 180
Query: 1226 MVNRTTVVVAHRLT-TIKNADIIAVVKNGVIAEQGS 1260
V+ +H L T+++A ++K G + G
Sbjct: 181 QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 4e-30
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 41/239 (17%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+ + ++ F Y A +F + + G A++GQ+G GKST++ L+ + P G++
Sbjct: 5 LSVENLGFYYQAENF--LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPIL-FATSLRENIAYG---------KENATDQEI- 483
+ IG V Q FA S+ + + G K + D ++
Sbjct: 63 EVYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 484 RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSA 543
A++ N + T LSGGQ+Q I IARAI K++LLDE TSA
Sbjct: 110 MQALDYLNLTHLAKREF-----------TSLSGGQRQLILIARAIASECKLILLDEPTSA 158
Query: 544 LDAESERIVQDALVKIMTS--RTTVVVAHRLTT-IRNADLIAVVHQGKIVEKGTHDELI 599
LD ++ IV L+ + S T V H+ + A+ ++++ G ++
Sbjct: 159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF-GETRNIL 216
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 7e-28
Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 35/230 (15%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
A+ + + F Y +F+ L + G +A++G++G GKST++ L+ + P G
Sbjct: 4 ALSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVL-FNETIRTNIAYGKQG------GATEEEIIA 1151
+ + Q +G V Q F ++ + G+ +
Sbjct: 62 IEVY-------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV 108
Query: 1152 ATEASNAHNFISALPHGYETNVGERGV-QLSGGQKQRIAIARAVLKNPKILLLDEATSAL 1210
A +A + N ++ L +R LSGGQ+Q I IARA+ K++LLDE TSAL
Sbjct: 109 AMQALDYLN-LTHL--------AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSAL 159
Query: 1211 DAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAE 1257
D ++ +V L + N T V H+ + A+ ++
Sbjct: 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF 209
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 7e-30
Identities = 68/236 (28%), Positives = 116/236 (49%), Gaps = 34/236 (14%)
Query: 375 IELRDVYFRYPARPEVQIFA--GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
IE+ + ++ F+ SL V SG ++G +G+GK+ + L+ F+ PD+G
Sbjct: 2 IEIESLSRKWKN------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG 55
Query: 433 EVLIDGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIAYG---KENATDQEIRTAIE 488
+L+DG D+ L + + I V Q LF ++++N+ +G K+ + +
Sbjct: 56 RILLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR 113
Query: 489 LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
+D+ P LSGG++QR+A+ARA++ NPKILLLDE SALD +
Sbjct: 114 DLKIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT 162
Query: 549 ERIVQDALVKIMTS--RTTVVVAH----RLTTIRNADLIAVVHQGKIVEKGTHDEL 598
+ ++ L + T + + H AD IAVV GK+++ G +E+
Sbjct: 163 QENAREMLSVLHKKNKLTVLHITHDQTEARIM---ADRIAVVMDGKLIQVGKPEEI 215
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 32/212 (15%)
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIE---LPKFKLSWLR 1115
NL L + SG+ ++G +G+GK+ + LI F+ PDSG +LLD + L K
Sbjct: 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK----H 72
Query: 1116 QQMGLVSQEPVLF-NETIRTNIAYG-KQGGATEEEIIA-ATEASNAHNFISALPHGYETN 1172
+ V Q LF + ++ N+ +G + + + + + + P
Sbjct: 73 D-IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL----- 126
Query: 1173 VGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRT 1230
LSGG++QR+A+ARA++ NPKILLLDE SALD ++ ++ L + T
Sbjct: 127 ------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT 180
Query: 1231 TVVVAH----RLTTIKNADIIAVVKNGVIAEQ 1258
+ + H AD IAVV +G + Q
Sbjct: 181 VLHITHDQTEARIM---ADRIAVVMDGKL-IQ 208
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 1e-29
Identities = 67/245 (27%), Positives = 119/245 (48%), Gaps = 31/245 (12%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
I +++V + +V ++++ +G ++G SG+GK+T + ++ P GE
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 434 VLIDGIDIKKLQLKWIREK---IGLVSQEPILFAT-SLRENIAYGKENA------TDQEI 483
+ D + + + IG+V Q L+ + ENIA+ N + +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 484 RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSA 543
++ + ++ P+ +LSG Q+QR+A+ARA++K+P +LLLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 544 LDAESERIVQDALVKIMTSR---TTVVVAHRLT---TIRNADLIAVVHQGKIVEKGTHDE 597
LDA R ALVK + SR T +VV+H I AD + V+ +GK+V+ G ++
Sbjct: 171 LDARM-RDSARALVKEVQSRLGVTLLVVSHDPADIFAI--ADRVGVLVKGKLVQVGKPED 227
Query: 598 LIKDP 602
L +P
Sbjct: 228 LYDNP 232
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 7e-21
Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 31/234 (13%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
I ++ VS + + V N+ ++I +G+ ++G SG+GK+T + +I P +G +
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1100 LLDNIELPKFKLSWL---RQQMGLVSQEPVLF-NETIRTNIAYG-KQGGATEEEIIA--- 1151
D+ + + +++G+V Q L+ N T NIA+ ++EEI
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 1152 -ATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL 1210
+ + H+ ++ P +LSG Q+QR+A+ARA++K+P +LLLDE S L
Sbjct: 123 EVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 1211 DA---ESERVVQDALERVMVNRTTVVVAHRLT---TIKNADIIAVVKNGVIAEQ 1258
DA +S R + ++ + T +VV+H I AD + V+ G + Q
Sbjct: 172 DARMRDSARALVKEVQS-RLGVTLLVVSHDPADIFAI--ADRVGVLVKGKL-VQ 221
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 4e-29
Identities = 58/271 (21%), Positives = 99/271 (36%), Gaps = 31/271 (11%)
Query: 378 RDVYFRYPARPEVQIFAGFSLH----VPSGTTAALVGQSGSGKSTVIS-----LVERFYD 428
D RY F L+ V G +VG +G+GK+T + L+ +
Sbjct: 95 EDCVHRYGVN-------AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147
Query: 429 -PDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAI 487
D+ + +I +LQ + R K G + L GK + ++
Sbjct: 148 DNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVR---ELLKKVD 204
Query: 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
E+ + + +L L+ + QLSGG+ QR+AIA A+L+ DE +S LD
Sbjct: 205 EVGKFEEVVKEL--ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 262
Query: 548 SERIVQDALVKIMTSRTTVVVA-HRLTTIRN-ADLIAVVH-----QGKIVEKGTHDELIK 600
V + ++ V+V H L + +D+I VV+ G + I
Sbjct: 263 QRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGIN 322
Query: 601 DPEGPY--TQLVRLQEGSKEAEDALATDADK 629
+ Y + VR + +
Sbjct: 323 EFLQGYLKDENVRFRPYEIRFTKLSERVDVE 353
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 5e-28
Identities = 53/244 (21%), Positives = 97/244 (39%), Gaps = 34/244 (13%)
Query: 1021 PKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSG 1080
+I +K +E + Y + I G+ + +VG +G G
Sbjct: 339 YEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNGIG 394
Query: 1081 KSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPV--LFNETIRTNIAY 1138
K+T + ++ +P G V D +++ Q + + V L ++ + +
Sbjct: 395 KTTFVKMLAGVEEPTEGKVEWDL------TVAYKPQYIKAEYEGTVYELLSKIDSSKL-- 446
Query: 1139 GKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNP 1198
+ E++ + Y+ NV + LSGG+ QR+AIA +L++
Sbjct: 447 --NSNFYKTELLKPLG----------IIDLYDRNVED----LSGGELQRVAIAATLLRDA 490
Query: 1199 KILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVI 1255
I LLDE ++ LD E V A+ +M +T +VV H + I +D + V + G
Sbjct: 491 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE-GEP 549
Query: 1256 AEQG 1259
G
Sbjct: 550 GRHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 5e-28
Identities = 50/246 (20%), Positives = 93/246 (37%), Gaps = 33/246 (13%)
Query: 354 RKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSG 413
R +I S + E +E + Y + + G +VG +G
Sbjct: 337 RPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNG 392
Query: 414 SGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPI--LFATSLRENI 471
GK+T + ++ +P G+V D + + + I + + L +
Sbjct: 393 IGKTTFVKMLAGVEEPTEGKVEWDL------TVAYKPQYIKAEYEGTVYELLSKIDSS-- 444
Query: 472 AYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531
+ ++ ++ D+ + LSGG+ QR+AIA +L++
Sbjct: 445 ----KLNSNFYKTELLKPLGIIDLYDRNVE-----------DLSGGELQRVAIAATLLRD 489
Query: 532 PKILLLDEATSALDAESERIVQDALVKIMTS--RTTVVVAHRLTTIRN-ADLIAVVHQGK 588
I LLDE ++ LD E V A+ +M +T +VV H + I +D + V +G+
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF-EGE 548
Query: 589 IVEKGT 594
G
Sbjct: 549 PGRHGR 554
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 7e-26
Identities = 48/246 (19%), Positives = 86/246 (34%), Gaps = 34/246 (13%)
Query: 1038 GAIELRCVSFKYPTRP-----DVQIFRNLCLSIPSGKTVALVGESGSGKSTVI-----AL 1087
AI + + + + G V +VG +G+GK+T + L
Sbjct: 82 NAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQL 141
Query: 1088 IERFYD-PDSGHVLLDNI---ELPKFKLSWLRQQMGLVSQEPV--LFNETIRTNIAYGKQ 1141
I + DS ++ EL + ++ V + L + ++ + +
Sbjct: 142 IPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLK 201
Query: 1142 GGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKIL 1201
+ + N + H QLSGG+ QR+AIA A+L+
Sbjct: 202 KVDEVGKFEEVVKELELENVLDRELH-----------QLSGGELQRVAIAAALLRKAHFY 250
Query: 1202 LLDEATSALDAESERVVQDALERVMVNRTTVVVA-HRLTTIKN-ADIIAVVKN-----GV 1254
DE +S LD V + R+ V+V H L + +D+I VV G+
Sbjct: 251 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGI 310
Query: 1255 IAEQGS 1260
++
Sbjct: 311 FSKPKG 316
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 6e-25
Identities = 79/247 (31%), Positives = 128/247 (51%), Gaps = 42/247 (17%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
EI+L ++ ++ + +L + G AL+G SGSGKST++ + Y P +G+
Sbjct: 3 EIKLENIVKKFGNFTALN---NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFAT-SLRENIAYGKENAT------DQEIRTA 486
+ D D+ +L K R +GLV Q L+ ++ +NIA+ E D+++R
Sbjct: 60 IYFDEKDVTELPPK-DRN-VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREV 117
Query: 487 IELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 546
++ + K +++ P QLSGGQ+QR+AIARA++K P++LLLDE S LDA
Sbjct: 118 AKMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Query: 547 --------ESERIVQDALVKIMTSRTTVVVAHRLT---TIRNADLIAVVHQGKIVEKGTH 595
E +R+ ++ TTV V H + AD IAV+ +G+I++ GT
Sbjct: 167 LLRLEVRAELKRLQKE------LGITTVYVTHDQAEALAM--ADRIAVIREGEILQVGTP 218
Query: 596 DELIKDP 602
DE+ P
Sbjct: 219 DEVYYKP 225
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 2e-16
Identities = 78/235 (33%), Positives = 112/235 (47%), Gaps = 40/235 (17%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
I+L + K+ + N+ L I G+ +AL+G SGSGKST++ I Y P SG +
Sbjct: 4 IKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 1100 LLD----NIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYG-KQGGATEEEIIA-- 1151
D PK + +GLV Q L+ + T+ NIA+ + A EEI
Sbjct: 61 YFDEKDVTELPPK------DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKV 114
Query: 1152 --ATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSA 1209
+ + ++ P QLSGGQ+QR+AIARA++K P++LLLDE S
Sbjct: 115 REVAKMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDEPLSN 163
Query: 1210 LDAE---SERVVQDALERVMVNRTTVVVAHRLT---TIKNADIIAVVKNGVIAEQ 1258
LDA R L++ + TTV V H + AD IAV++ G I Q
Sbjct: 164 LDALLRLEVRAELKRLQK-ELGITTVYVTHDQAEALAM--ADRIAVIREGEI-LQ 214
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 2e-22
Identities = 77/249 (30%), Positives = 120/249 (48%), Gaps = 46/249 (18%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
I + ++ + V+ G S V G AL+G SG GK+T + ++ Y P +GE
Sbjct: 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFAT-SLRENIAYGKENA--TDQEIRTAIELA 490
+ D + + + K RE +G+V Q L+ ++ ENIA+ + E+ +
Sbjct: 60 IYFDDVLVNDIPPK-YRE-VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVV-- 115
Query: 491 NAAK------FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
A+ +D+ P QLSGGQ+QR+A+ARA++K PK+LL DE S L
Sbjct: 116 EIARKLLIDNLLDRKPT-----------QLSGGQQQRVALARALVKQPKVLLFDEPLSNL 164
Query: 545 DA--------ESERIVQDALVKIMTSRTTVVVAHRLT---TIRNADLIAVVHQGKIVEKG 593
DA E + + Q ++ T+V V H T+ A IAV +QGK+V+ G
Sbjct: 165 DANLRMIMRAEIKHLQQ----ELGI--TSVYVTHDQAEAMTM--ASRIAVFNQGKLVQYG 216
Query: 594 THDELIKDP 602
T DE+ P
Sbjct: 217 TPDEVYDSP 225
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 5e-14
Identities = 71/238 (29%), Positives = 111/238 (46%), Gaps = 41/238 (17%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
I + + KY V+ + + G+ VAL+G SG GK+T + ++ Y P SG +
Sbjct: 4 IRVVNLK-KYF--GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
Query: 1100 LLD----NIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYG-KQGGATEEEIIAA- 1152
D N PK +++G+V Q L+ + T+ NIA+ + +++E+
Sbjct: 61 YFDDVLVNDIPPK------YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRV 114
Query: 1153 TEASNAHNFISAL----PHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATS 1208
E + I L P QLSGGQ+QR+A+ARA++K PK+LL DE S
Sbjct: 115 VEIARKLL-IDNLLDRKPT-----------QLSGGQQQRVALARALVKQPKVLLFDEPLS 162
Query: 1209 ALDAE---SERVVQDALERVMVNRTTVVVAHRLT---TIKNADIIAVVKNGVIAEQGS 1260
LDA R L++ + T+V V H T+ A IAV G + + G+
Sbjct: 163 NLDANLRMIMRAEIKHLQQ-ELGITSVYVTHDQAEAMTM--ASRIAVFNQGKLVQYGT 217
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 8e-22
Identities = 69/249 (27%), Positives = 117/249 (46%), Gaps = 46/249 (18%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
E++L ++ R+ V +L + G L+G SG GK+T + ++ +P G
Sbjct: 11 EVKLENLTKRFGNFTAVN---KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFAT-SLRENIAYGKENA--TDQEIRTAIELA 490
+ D+ L K R I +V Q ++ ++ ENIA+ + EI +
Sbjct: 68 IYFGDRDVTYLPPK-DRN-ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR-- 123
Query: 491 NAAK------FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
AA+ +++ P QLSGGQ+QR+A+ARAI+ P +LL+DE S L
Sbjct: 124 WAAELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNL 172
Query: 545 DA--------ESERIVQDALVKIMTSRTTVVVAHRLT---TIRNADLIAVVHQGKIVEKG 593
DA E +++ Q K+ TT+ V H T+ D IAV+++G++++ G
Sbjct: 173 DAKLRVAMRAEIKKLQQ----KLKV--TTIYVTHDQVEAMTM--GDRIAVMNRGQLLQIG 224
Query: 594 THDELIKDP 602
+ E+ P
Sbjct: 225 SPTEVYLRP 233
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-13
Identities = 66/239 (27%), Positives = 108/239 (45%), Gaps = 48/239 (20%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTV---IALIERFYDPDS 1096
++L ++ ++ + L L+I G+ + L+G SG GK+T IA +E +P
Sbjct: 12 VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE---EPTE 65
Query: 1097 GHVLLD----NIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYG-KQGGATEEEII 1150
G + PK + + +V Q ++ + T+ NIA+ K ++EI
Sbjct: 66 GRIYFGDRDVTYLPPK------DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEID 119
Query: 1151 AA-TEASNAHNFISAL----PHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDE 1205
A+ I L P QLSGGQ+QR+A+ARA++ P +LL+DE
Sbjct: 120 KRVRWAAELLQ-IEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDE 167
Query: 1206 ATSALDAE---SERVVQDALERVMVNRTTVVVAHRLT---TIKNADIIAVVKNGVIAEQ 1258
S LDA+ + R L++ + TT+ V H T+ D IAV+ G + Q
Sbjct: 168 PLSNLDAKLRVAMRAEIKKLQQ-KLKVTTIYVTHDQVEAMTM--GDRIAVMNRGQL-LQ 222
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 4e-21
Identities = 64/253 (25%), Positives = 115/253 (45%), Gaps = 48/253 (18%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
+ L DV+ + V+ SL V G L+G SG GK+T + ++ +P G+
Sbjct: 3 GVRLVDVWKVFGEVTAVR---EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 434 VLIDGIDIKKLQLKWIRE----KIGLVSQEPILFAT-SLRENIAYGKENA--TDQEIRTA 486
+ I + + I +V Q L+ ++ +NIA+ + QEI
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
Query: 487 IELANAAK------FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEA 540
+ A+ +++ P+ +LSGGQ+QR+A+ RAI++ P++ L+DE
Sbjct: 120 VR--EVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEP 166
Query: 541 TSALDA--------ESERIVQDALVKIMTSRTTVVVAHRLT---TIRNADLIAVVHQGKI 589
S LDA E +++ + ++ TT+ V H T+ D IAV+++G +
Sbjct: 167 LSNLDAKLRVRMRAELKKLQR----QLGV--TTIYVTHDQVEAMTM--GDRIAVMNRGVL 218
Query: 590 VEKGTHDELIKDP 602
+ G+ DE+ P
Sbjct: 219 QQVGSPDEVYDKP 231
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 3e-13
Identities = 64/239 (26%), Positives = 107/239 (44%), Gaps = 42/239 (17%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTV---IALIERFYDPDS 1096
+ L V + +V R + L + G+ + L+G SG GK+T IA +E +P
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE---EPSR 57
Query: 1097 GHVLLD----NIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYG-KQGGATEEEII 1150
G + + + + + +V Q L+ + T+ NIA+ K +EI
Sbjct: 58 GQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEID 117
Query: 1151 AA-TEASNAHNFISAL----PHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDE 1205
E + ++ L P +LSGGQ+QR+A+ RA+++ P++ L+DE
Sbjct: 118 QRVREVAELLG-LTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDE 165
Query: 1206 ATSALDAE---SERVVQDALERVMVNRTTVVVAHRLT---TIKNADIIAVVKNGVIAEQ 1258
S LDA+ R L+R + TT+ V H T+ D IAV+ GV+ +Q
Sbjct: 166 PLSNLDAKLRVRMRAELKKLQR-QLGVTTIYVTHDQVEAMTM--GDRIAVMNRGVL-QQ 220
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 2e-20
Identities = 57/229 (24%), Positives = 107/229 (46%), Gaps = 24/229 (10%)
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454
G S+ V G ++G +GSGKST+I+++ F D G V + DI + + G
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY-G 83
Query: 455 LVS--QEPILFAT-SLRENIAYGKENATDQEIRTAI----------ELANAAKFIDKLPK 501
+V Q P ++ EN+ G+ + + + + A K ++ L
Sbjct: 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL-- 141
Query: 502 GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL-DAESERIVQDALVKIM 560
L + +LSGGQ + + I RA++ NPK++++DE + + + I + ++++
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF-NHVLELK 200
Query: 561 TSRTTVV-VAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELI----KDPE 603
T + + HRL + N D + V+ G+I+ +G +E I DP+
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPK 249
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 2e-12
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119
+ +S+ G ++G +GSGKST+I +I F D G V +N ++ + G
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE-PAELYHYG 83
Query: 1120 LVS--QEPVLFNE-TIRTNIAYGKQ------------GGATEEEIIAATEASNAHNFISA 1164
+V Q P E T+ N+ G+ +E +A F+
Sbjct: 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK- 142
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDE 1205
L H Y+ G +LSGGQ + + I RA++ NPK++++DE
Sbjct: 143 LSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDE 179
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 1e-18
Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 39/189 (20%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLV---ERFYDPD 430
++L++V + EV + +L + G VG SG GKST++ ++ E
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TIT 56
Query: 431 AGEVLIDGIDIKKLQLKWIREKIGLVSQE----PILFATSLRENIAYGKENA--TDQEIR 484
+G++ I + +G+V Q P L S+ EN+++G + A + I
Sbjct: 57 SGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHL---SVAENMSFGLKLAGAKKEVIN 111
Query: 485 TAIELANAAK------FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLD 538
+ A+ +D+ PK LSGGQ+QR+AI R ++ P + LLD
Sbjct: 112 QRVN--QVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLD 158
Query: 539 EATSALDAE 547
E S LDA
Sbjct: 159 EPLSNLDAA 167
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 6e-09
Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 25/96 (26%)
Query: 1179 QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV-M----------V 1227
LSGGQ+QR+AI R ++ P + LLDE S LDA AL RV M +
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA--------AL-RVQMRIEISRLHKRL 183
Query: 1228 NRTTVVVAHRLT---TIKNADIIAVVKNGVIAEQGS 1260
RT + V H T+ AD I V+ G +A+ G
Sbjct: 184 GRTMIYVTHDQVEAMTL--ADKIVVLDAGRVAQVGK 217
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 84.8 bits (211), Expect = 2e-18
Identities = 63/240 (26%), Positives = 114/240 (47%), Gaps = 28/240 (11%)
Query: 376 ELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVL 435
E++ ++ Y A + G L VP G L+G +G+GK+T +S + G+++
Sbjct: 8 EVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 436 IDGIDIKKLQLKWI-REKIGLVSQEPILFAT-SLRENI---AYGKENATDQEIRTAIELA 490
+G DI I R I LV + +F ++ EN+ AY +++ + I+ +E
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD--KEGIKRDLE-- 120
Query: 491 NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER 550
P+ L + G LSGG++Q +AI RA++ PK+L++DE + L +
Sbjct: 121 ---WIFSLFPR-LKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---API 173
Query: 551 IVQ---DALVKIMTSRTTVVV----AHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPE 603
+V + + KI TT+++ A ++ A V+ G+IV +G EL+ +
Sbjct: 174 LVSEVFEVIQKINQEGTTILLVEQNALG--ALKVAHYGYVLETGQIVLEGKASELLDNEM 231
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 66.7 bits (164), Expect = 4e-12
Identities = 53/231 (22%), Positives = 103/231 (44%), Gaps = 38/231 (16%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW 1113
+ + + L +P G+ V L+G +G+GK+T ++ I G ++ + ++
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 1114 L-RQQMGLVSQEPVLFNE-TIRTNI---AYGKQGGATEEEIIAATEASNAHNFISALPHG 1168
+ R + LV + +F E T+ N+ AY ++ + L
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKR---------------DLEWI 122
Query: 1169 YET--NVGERGVQ----LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDAL 1222
+ + ER Q LSGG++Q +AI RA++ PK+L++DE + L + +V +
Sbjct: 123 FSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---APILVSEVF 179
Query: 1223 ERV-MVNR--TTVVV----AHRLTTIKNADIIAVVKNGVIAEQGSHDALMK 1266
E + +N+ TT+++ A +K A V++ G I +G L+
Sbjct: 180 EVIQKINQEGTTILLVEQNALG--ALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.8 bits (201), Expect = 1e-15
Identities = 93/661 (14%), Positives = 168/661 (25%), Gaps = 237/661 (35%)
Query: 344 AAYKMFETIKRKPK----------IDP-YD--TSGITLEKIEGEIELRD-VYFRYPARPE 389
++F T+ K + + Y S I E+ + + R + R +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 390 VQIFAGFSLHVP----------------SGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
Q+FA +V + G GSGK+ V A +
Sbjct: 123 NQVFA--KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-----------ALD 169
Query: 434 VLIDGIDIKKLQLK------WIREKIGLVSQEPILFA--TSLRENIAYGKENATDQEIRT 485
V + K+Q K W+ + + + L I + +D
Sbjct: 170 VCLS----YKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 486 AIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILL-LDEATSAL 544
+ + + + +L K + LL L
Sbjct: 224 KLRIHSIQAELRRL------------------LKSK--------PYENCLLVLLN----- 252
Query: 545 DAESERIVQDA-LVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPE 603
VQ+A +++ TT R + + TH L
Sbjct: 253 -------VQNAKAWNAFNLSCKILL----TT-RFKQVTDFL----SAATTTHISLDHHSM 296
Query: 604 GPYTQLVRLQEGSKEAEDALATDADKLDSSFDILDKAMTRSGSR-----GESMRRSISR- 657
T E + L LD L + + + R ES+R ++
Sbjct: 297 T-LTP--------DEVKSLL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 658 ----HSSGSR---------------------HSFG-FTYGVPGPINVFET--EEGDQGGA 689
H + + F P + +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---- 400
Query: 690 ERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSI------ 743
+ +++ KL L E + I + L L +
Sbjct: 401 KSDVMVVV--NKLHKYSLVEKQPKESTI--------SIPSIY-----LELKVKLENEYAL 445
Query: 744 -RMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAG-----------GKLIR 791
R + + K +LI YF+ G L R
Sbjct: 446 HRSIVD-HYNIPKTFDSD----------DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 792 RI-RSLTF--EKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATI 848
+ F +K+ H +W N+SGS+ L + + D+ + +
Sbjct: 495 MVFLDFRFLEQKIRHDSTAW-----NASGSILNTL-QQLKFYKPYICDNDPKYERLVNA- 547
Query: 849 AAGLIIAFTANWILAFVI-----LAVSPLM-LVQGYTQTKFMKGFSADAKLMYEEA-SQV 901
IL F+ L S L++ A+ + ++EEA QV
Sbjct: 548 ------------ILDFLPKIEENLICSKYTDLLR--------IALMAEDEAIFEEAHKQV 587
Query: 902 A 902
Sbjct: 588 Q 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 1e-12
Identities = 73/560 (13%), Positives = 166/560 (29%), Gaps = 172/560 (30%)
Query: 121 TGERQAT--RIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQ 178
TGE Q I ++ + + D + ++ + D I++ + +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVD-NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 179 LMST--------FFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAY 230
+ + F V+ + + +MS + + +
Sbjct: 70 TLLSKQEEMVQKFVEE-VLRINYKF----------------------LMSPIKTEQRQPS 106
Query: 231 SEAGTVVEQTVSGIRTVSSFTGEKQAIEKYN---NKLQVAYRAAVQQ----------GMV 277
+EQ + Q KYN + + R A+ + G++
Sbjct: 107 MMTRMYIEQ-------RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 278 SGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGG----TVINV-----IMAIMTGGMSL 328
G G + L V +Y ++ + + N ++ ++ L
Sbjct: 160 -GSGKTWVALDVCLSYK----------VQCKMDFKIFWLNLKNCNSPETVLEMLQ---KL 205
Query: 329 -GQTSPCLNAFAGGQAAAYKMFETIKRKPKI----DPYDTSGITLEKIEGEIELRDVYFR 383
Q P + + + +I+ + + PY+ L + L +V
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC---L------LVLLNVQ-- 254
Query: 384 YPARPEVQIFAGFSLH----VPSGTT--AALVGQSGSGKSTVISLVER---FYDPDAGEV 434
+ + F+L + TT + + +T ISL + +
Sbjct: 255 -----NAKAWNAFNLSCKILL---TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 435 LIDGIDIKKLQLKWIREKIG----LVSQEPILFATSLRENIA---YGKENATDQEIRTAI 487
L+ +D + L RE + +S + A S+R+ +A K D+ + T I
Sbjct: 307 LLKYLDCRPQDLP--REVLTTNPRRLS----IIAESIRDGLATWDNWKHVNCDK-LTTII 359
Query: 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQR---IAIARAILKNPKI------LLLD 538
E ++ L ++ +++ + I L+
Sbjct: 360 E-----SSLNVLE--------------PAEYRKMFDRLSVFP---PSAHIPTILLSLIWF 397
Query: 539 EATSALDAESERIVQD----ALVKIMTSRTTVVVAHRLT--TIRNADLIAVVHQGKIVE- 591
+ ++ +V +LV+ +T+ + + + +H+ IV+
Sbjct: 398 DVIK---SDVMVVVNKLHKYSLVEKQPKESTISI-PSIYLELKVKLENEYALHR-SIVDH 452
Query: 592 -----KGTHDELIKDPEGPY 606
D+LI Y
Sbjct: 453 YNIPKTFDSDDLIPPYLDQY 472
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 2e-08
Identities = 38/249 (15%), Positives = 73/249 (29%), Gaps = 75/249 (30%)
Query: 1048 KYP-TRPD-VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIE 1105
KY +R R L + K V + G GSGK+ V + Y + ++
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK------VQCKMD 181
Query: 1106 LPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISAL 1165
FK+ WL + + + E ++ + L
Sbjct: 182 ---FKIFWLN--LKNCN----------------------SPETVLEM---------LQKL 205
Query: 1166 PHGYETNVGERGVQLSGGQKQRIAIARAVLKN-------PKILL-LDEATSALDAESERV 1217
+ + N R S K RI +A L+ LL L + ++ +
Sbjct: 206 LYQIDPNWTSRSDHSS-NIKLRIHSIQAELRRLLKSKPYENCLLVLL------NVQNAKA 258
Query: 1218 VQDALE---RVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYAS 1274
+A ++++ TT + + + M +T S
Sbjct: 259 W-NAFNLSCKILL--TT----------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 1275 LVALHVSSS 1283
L+ ++
Sbjct: 306 LLLKYLDCR 314
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 80.5 bits (198), Expect = 3e-15
Identities = 50/239 (20%), Positives = 88/239 (36%), Gaps = 34/239 (14%)
Query: 335 LNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFA 394
+ F + A + E KR P + E ++ + Y A+ +
Sbjct: 396 MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI---LLN 452
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454
L + + G +G GKST++ + A +DG ++ +
Sbjct: 453 KTQLRLKRARRYGICGPNGCGKSTLMRAI-------ANG-QVDGFPTQE------ECRTV 498
Query: 455 LVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGL---DTMAGEHG 511
V + + + + AI+ DKL D M
Sbjct: 499 YVEHDIDGTHSDTS---VLDFVFESGVGTKEAIK--------DKL-IEFGFTDEMIAMPI 546
Query: 512 TQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAH 570
+ LSGG K ++A+ARA+L+N ILLLDE T+ LD + + + L T++ ++H
Sbjct: 547 SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 79.3 bits (195), Expect = 5e-15
Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 26/186 (13%)
Query: 1051 TRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK 1110
+ L + + + G +G GKST++ I + +D +
Sbjct: 444 AYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAI--------ANGQVDGFPTQE-- 493
Query: 1111 LSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYE 1170
+ V + + + + + + G +E I
Sbjct: 494 ----ECRTVYVEHDID-GTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT-----DEMIA 543
Query: 1171 TNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRT 1230
+ LSGG K ++A+ARAVL+N ILLLDE T+ LD + + + L T
Sbjct: 544 MPISA----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGIT 597
Query: 1231 TVVVAH 1236
++ ++H
Sbjct: 598 SITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 2e-09
Identities = 41/269 (15%), Positives = 81/269 (30%), Gaps = 38/269 (14%)
Query: 349 FETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAAL 408
F I+ P + + E + + + F + GT +
Sbjct: 746 FAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKI---EGTPRRI 802
Query: 409 VGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLR 468
G K E + + + + + G + + + +
Sbjct: 803 AGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVES---HSKMVA 859
Query: 469 EN------IAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHG--TQLSGGQKQ 520
E + T +EI + GLD H LSGGQK
Sbjct: 860 EVDMKEALASGQFRPLTRKEIEEHC-----SML------GLDPEIVSHSRIRGLSGGQKV 908
Query: 521 RIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN-AD 579
++ +A + P +++LDE T+ LD +S + AL + +++ H +N +
Sbjct: 909 KLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTE 966
Query: 580 LIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
+ V G++ G +
Sbjct: 967 EVWAVKDGRMTPSG----------HNWVS 985
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 2e-09
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 1179 QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRL 1238
LSGGQK ++ +A + P +++LDE T+ LD +S + AL+ +++ H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIITHSA 958
Query: 1239 TTIKN-ADIIAVVKNGVI 1255
KN + + VK+G +
Sbjct: 959 EFTKNLTEEVWAVKDGRM 976
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 6e-05
Identities = 21/110 (19%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+++ + F+YP ++ +A++G +G+GKST+I ++ P SG V
Sbjct: 672 VKVTNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEI 1149
++++++Q + ++T I + Q G E +
Sbjct: 731 YTH----ENCRIAYIKQHA--FAHIESHLDKTPSEYIQWRFQTGEDRETM 774
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+++ ++ F+YP + + + A++G +G+GKST+I+++ P +GEV
Sbjct: 672 VKVTNMEFQYPGTSKP-QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 63/238 (26%), Positives = 103/238 (43%), Gaps = 44/238 (18%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKST---VISLVERFYDPDAGEVLIDGIDIKKLQLK 447
I G +L VP G AL+G +G+GKST +++ Y + GE+L+DG +I +L
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENILELSP- 74
Query: 448 WIREKIG--LVSQEP-----ILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLP 500
R + G L Q P + A LR + A E+ A+F K+
Sbjct: 75 DERARKGLFLAFQYPVEVPGVTIANFLRLAL-----QAKLGR-----EV-GVAEFWTKVK 123
Query: 501 KGLDTMA------------GEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
K L+ + G SGG+K+R I + ++ P +LDE S LD ++
Sbjct: 124 KALELLDWDESYLSRYLNEG-----FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDA 178
Query: 549 ERIVQDALVKIMTS-RTTVVVAH--RLTTIRNADLIAVVHQGKIVEKGTHDELIKDPE 603
++V + + +V+ H R+ D + V+ G++V G EL + E
Sbjct: 179 LKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP-ELALELE 235
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 3e-07
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 24/237 (10%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKST---VIALIERFYDPDSGHVLLDNIELPKFK 1110
I + + L +P G+ AL+G +G+GKST ++A Y + G +LLD + +
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENI--LE 71
Query: 1111 LS-WLRQQMG--LVSQEPV----LFNET-IRTNI-AYGKQGGATEEEIIAATEASNAHNF 1161
LS R + G L Q PV + +R + A + E +A ++
Sbjct: 72 LSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDW 131
Query: 1162 ISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDA 1221
+ Y N G SGG+K+R I + ++ P +LDE S LD ++ +VV
Sbjct: 132 DESYLSRY-LNEG-----FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARG 185
Query: 1222 LERVMV-NRTTVVVAH--RLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
+ + N +V+ H R+ D + V+ +G + G + +++ Y L
Sbjct: 186 VNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGYEWL 242
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 4e-08
Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 14/172 (8%)
Query: 433 EVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANA 492
E + K E I V + L + I +
Sbjct: 167 ETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVV 226
Query: 493 AKFIDKLPKGLDTMAGE-HGTQLSGGQKQ------RIAIARAILKNPKILLLDEATSALD 545
+K+ + E T LSGG++ R+A++ + +L+LDE T LD
Sbjct: 227 RAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLD 286
Query: 546 AESERIVQDALVKIMTS-RTTVVVAHRLTTIRNADLIAVV------HQGKIV 590
E R + + + + ++V+H AD + + + ++V
Sbjct: 287 EERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSSKVEVV 338
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 1179 QLSGGQKQ------RIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN-RTT 1231
LSGG++ R+A++ + +L+LDE T LD E R + +ER +
Sbjct: 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 307
Query: 1232 VVVAHRLTTIKNAD-IIAVVKNG 1253
++V+H AD +I +
Sbjct: 308 ILVSHDEELKDAADHVIRISLEN 330
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 2e-07
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 512 TQLSGGQKQRIAIA------RAILKNPKILLLDEATSALDAESERIVQDALVKIMTS-RT 564
T LSGG++ + +A + +L+LDE T LD E R + + + +
Sbjct: 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ 115
Query: 565 TVVVAHRLTTIRNADLI------AVVHQGKIV 590
++V+H AD + + ++V
Sbjct: 116 VILVSHDEELKDAADHVIRISLENGSSKVEVV 147
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-07
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 1179 QLSGGQKQRIAIA------RAVLKNPKILLLDEATSALDAESERVVQDALER-VMVNRTT 1231
LSGG++ + +A + +L+LDE T LD E R + +ER +
Sbjct: 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116
Query: 1232 VVVAHRLTTIKNAD-IIAVVKNG 1253
++V+H AD +I +
Sbjct: 117 ILVSHDEELKDAADHVIRISLEN 139
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 32/243 (13%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKST---VIALIERFYDPDSGHVLLDNIELPKFK 1110
D I R L L + G+ A++G +GSGKST +A E Y+ G V +L
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDL--LA 88
Query: 1111 LS-WLRQQMG--LVSQEP-----VLFNETIRTNI-AYGKQGGATEEEIIAAT------EA 1155
LS R G + Q P V ++T + A G +E + E
Sbjct: 89 LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG--QETLDRFDFQDLMEEK 146
Query: 1156 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE 1215
L NVG SGG+K+R I + + P++ +LDE+ S LD ++
Sbjct: 147 IALLKMPEDLLTRS-VNVG-----FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDAL 200
Query: 1216 RVVQDALERVMV-NRTTVVVAH--RLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAY 1272
+VV D + + R+ ++V H R+ D + V+ G I + G + ++ + Y
Sbjct: 201 KVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGY 260
Query: 1273 ASL 1275
L
Sbjct: 261 GWL 263
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 515 SGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS-RTTVVVAH--R 571
SGG+K+R I + + P++ +LDE+ S LD ++ ++V D + + R+ ++V H R
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225
Query: 572 LTTIRNADLIAVVHQGKIVEKGTHDELIKDPE 603
+ D + V++QG+IV+ G L+K E
Sbjct: 226 ILDYIKPDYVHVLYQGRIVKSGDF-TLVKQLE 256
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 7e-04
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKST---VISLVERFYDPDAGEVLIDGIDIKKL 444
I G SL V G A++G +GSGKST ++ E Y+ G V G D+ L
Sbjct: 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLAL 89
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 28/152 (18%), Positives = 57/152 (37%), Gaps = 13/152 (8%)
Query: 445 QLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQE-IRTAIELANAAKFIDKLPKGL 503
L +R G + L + Y E ++ + + +EL + P G+
Sbjct: 216 YLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGV 275
Query: 504 DTMAGEHGTQLSGGQKQRIAIARAI-------LKNPKILLLDEATSALDAESERIVQDAL 556
T+ LSGG++ +A++ + + ++LDE T LD + +
Sbjct: 276 LTID-----NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIF 330
Query: 557 VKIMTSRTTVVVAHRLTTIRNADLIAVVHQGK 588
K+ + +++ H AD+I V +
Sbjct: 331 RKVKSIPQMIIITHHRELEDVADVIINVKKDG 362
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 1179 QLSGGQKQRI------AIARAVLKNP-KILLLDEATSALDAESERVVQDALERVMVNRTT 1231
LSGG++ + AIA A++ N + ++LDE T LD + + +V
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 1232 VVVAHRLTTIKNADIIAVVK 1251
+++ H AD+I VK
Sbjct: 340 IIITHHRELEDVADVIINVK 359
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Length = 842 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 47/202 (23%), Positives = 74/202 (36%), Gaps = 38/202 (18%)
Query: 429 PDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAI- 487
+A V G+DI +L + L+ E + K +
Sbjct: 297 QEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERV---KNRPEQAIALQRMA 353
Query: 488 -ELANAAKFIDKLPKGLD--TMAGEHGTQLSGGQKQRIAIARAILKNPKILL------LD 538
+L + L GL + T LS G+ QR+ +A + N L LD
Sbjct: 354 ADLVKRLDVLLHL--GLGYLGLDRSTPT-LSPGELQRLRLATQLYSN----LFGVVYVLD 406
Query: 539 EATSAL-DAESERIVQDALVKIMTSR----TTVVVAHRLTTIRNADLI------AVVHQG 587
E ++ L A++E ++ AL + + + VV H L IR AD + A G
Sbjct: 407 EPSAGLHPADTEALL-SALENL---KRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGG 462
Query: 588 KIVEKGTHDELIKDPE---GPY 606
+I+ G + L PE G Y
Sbjct: 463 EILYSGPPEGLKHVPESQTGQY 484
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1283 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-95 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-90 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 7e-93 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-89 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-88 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-79 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-87 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-85 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 5e-81 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-80 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 6e-70 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-69 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-51 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-48 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-48 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-40 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-46 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-38 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-46 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-40 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-45 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-38 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-41 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-33 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 9e-41 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-31 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 8e-39 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-35 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-38 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 7e-32 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-38 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-33 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-37 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-33 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-35 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-28 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-34 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-28 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-32 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 7e-28 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-23 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-22 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-15 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 3e-13 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 4e-15 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 8e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 4e-07 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 9e-07 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 8e-04 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 303 bits (778), Expect = 3e-95
Identities = 124/246 (50%), Positives = 165/246 (67%), Gaps = 2/246 (0%)
Query: 368 LEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFY 427
+E +G I++ V F+Y E I +L + G T A VG SG GKST+I+L+ RFY
Sbjct: 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 428 DPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAI 487
D +G++LIDG +IK +R +IGLV Q+ ILF+ +++ENI G+ ATD+E+ A
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
++ANA FI LP+G DT GE G +LSGGQKQR++IAR L NP IL+LDEATSALD E
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 548 SERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYT 607
SE I+Q+AL + RTT++VAHRL+TI +AD I V+ G IVE GTH ELI +G Y
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYE 247
Query: 608 QLVRLQ 613
L +Q
Sbjct: 248 HLYSIQ 253
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 289 bits (742), Expect = 3e-90
Identities = 124/246 (50%), Positives = 172/246 (69%), Gaps = 3/246 (1%)
Query: 1033 LSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFY 1092
+ G I++ VSF+Y + I +++ LSI G+TVA VG SG GKST+I LI RFY
Sbjct: 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 1093 DPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAA 1152
D SG +L+D + F LR Q+GLV Q+ +LF++T++ NI G+ AT+EE++ A
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPT-ATDEEVVEA 127
Query: 1153 TEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
+ +NAH+FI LP GY+T VGERGV+LSGGQKQR++IAR L NP IL+LDEATSALD
Sbjct: 128 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 187
Query: 1213 ESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAY 1272
ESE ++Q+AL+ + +RTT++VAHRL+TI +AD I V++NG I E G+H L+ GAY
Sbjct: 188 ESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA-KQGAY 246
Query: 1273 ASLVAL 1278
L ++
Sbjct: 247 EHLYSI 252
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 297 bits (761), Expect = 7e-93
Identities = 126/255 (49%), Positives = 174/255 (68%), Gaps = 3/255 (1%)
Query: 362 DTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVIS 421
D +++ G++E R+V F YP R EV +L +P+G T ALVG+SGSGKST+ S
Sbjct: 1 DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 59
Query: 422 LVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGK-ENATD 480
L+ RFYD D G +L+DG D+++ L +R ++ LVSQ LF ++ NIAY + E +
Sbjct: 60 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 119
Query: 481 QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEA 540
++I A +A A FI+K+ GLDT+ GE+G LSGGQ+QRIAIARA+L++ IL+LDEA
Sbjct: 120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 179
Query: 541 TSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIK 600
TSALD ESER +Q AL ++ +RT++V+AHRL+TI AD I VV G IVE+GTH EL+
Sbjct: 180 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
Query: 601 DPEGPYTQLVRLQEG 615
G Y QL ++Q G
Sbjct: 240 QH-GVYAQLHKMQFG 253
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 288 bits (738), Expect = 1e-89
Identities = 129/252 (51%), Positives = 176/252 (69%), Gaps = 3/252 (1%)
Query: 1028 DEG-MTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIA 1086
DEG + G +E R V+F YP R +V RN+ L IP+GKTVALVG SGSGKST+ +
Sbjct: 1 DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 59
Query: 1087 LIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATE 1146
LI RFYD D GH+L+D +L ++ L+ LR Q+ LVSQ LFN+T+ NIAY + +
Sbjct: 60 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 119
Query: 1147 EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEA 1206
E+I A + A +FI+ + +G +T +GE GV LSGGQ+QRIAIARA+L++ IL+LDEA
Sbjct: 120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 179
Query: 1207 TSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMK 1266
TSALD ESER +Q AL+ + NRT++V+AHRL+TI+ AD I VV++G+I E+G+H L+
Sbjct: 180 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
Query: 1267 ITDGAYASLVAL 1278
G YA L +
Sbjct: 240 -QHGVYAQLHKM 250
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 283 bits (726), Expect = 3e-88
Identities = 108/240 (45%), Positives = 159/240 (66%), Gaps = 1/240 (0%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
+I R++ FRY I +L + G +VG+SGSGKST+ L++RFY P+ G+
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAA 493
VLIDG D+ W+R ++G+V Q+ +L S+ +NI+ + +++ A +LA A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
FI +L +G +T+ GE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 554 DALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
+ KI RT +++AHRL+T++NAD I V+ +GKIVE+G H EL+ +PE Y+ L +LQ
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 258 bits (661), Expect = 3e-79
Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 2/239 (0%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
I R + F+Y I N+ LSI G+ + +VG SGSGKST+ LI+RFY P++G V
Sbjct: 2 ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAH 1159
L+D +L +WLR+Q+G+V Q+ VL N +I NI+ G + E++I A + + AH
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAGAH 119
Query: 1160 NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQ 1219
+FIS L GY T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE V+
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1220 DALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278
+ ++ RT +++AHRL+T+KNAD I V++ G I EQG H L+ + Y+ L L
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 280 bits (718), Expect = 5e-87
Identities = 99/249 (39%), Positives = 154/249 (61%), Gaps = 4/249 (1%)
Query: 366 ITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVER 425
+T +EG ++ +DV F YP RP+V + G + + G ALVG +GSGKSTV +L++
Sbjct: 3 LTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62
Query: 426 FYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYG-KENATDQEIR 484
Y P G++L+DG + + + +++ ++ V QEP +F SL+ENIAYG + T +EI
Sbjct: 63 LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEIT 122
Query: 485 TAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
A + A FI LP+G DT E G+QLSGGQ+Q +A+ARA+++ P +L+LD+ATSAL
Sbjct: 123 AAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSAL 182
Query: 545 DAESERIVQDALVKIM--TSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDP 602
DA S+ V+ L + SR+ +++ L+ + AD I + G I E GTH +L++
Sbjct: 183 DANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK 242
Query: 603 EGPYTQLVR 611
G Y +V+
Sbjct: 243 -GCYWAMVQ 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 276 bits (708), Expect = 1e-85
Identities = 106/248 (42%), Positives = 157/248 (63%), Gaps = 3/248 (1%)
Query: 1031 MTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIER 1090
+T + G ++ + VSF YP RPDV + + L ++ G+ ALVG +GSGKSTV AL++
Sbjct: 3 LTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62
Query: 1091 FYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEII 1150
Y P G +LLD LP+++ +L +Q+ V QEP +F +++ NIAYG T EEI
Sbjct: 63 LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEIT 122
Query: 1151 AATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL 1210
AA S AH+FIS LP GY+T V E G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSAL
Sbjct: 123 AAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSAL 182
Query: 1211 DAESERVVQDALERVM--VNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKIT 1268
DA S+ V+ L +R+ +++ L+ ++ AD I ++ G I E G+H LM+
Sbjct: 183 DANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME-K 241
Query: 1269 DGAYASLV 1276
G Y ++V
Sbjct: 242 KGCYWAMV 249
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 263 bits (674), Expect = 5e-81
Identities = 103/242 (42%), Positives = 150/242 (61%), Gaps = 3/242 (1%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+ R V F Y QI R++ +A G SG GKST+ +L+ERFY P +G +
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAH 1159
+D + L R Q+G VSQ+ + TIR N+ YG +G T+E++ + + A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1160 NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQ 1219
+F+ +P T VGERGV++SGGQ+QR+AIARA L+NPKIL+LDEAT++LD+ESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1220 DALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALH 1279
AL+ +M RTT+V+AHRL+TI +AD I ++ G I G H+ L+ T YA V+
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVSEQ 238
Query: 1280 VS 1281
++
Sbjct: 239 LT 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 262 bits (671), Expect = 1e-80
Identities = 106/240 (44%), Positives = 149/240 (62%), Gaps = 4/240 (1%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+ R V F Y ++ S + A G SG GKST+ SL+ERFY P AGE+
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQE-IRTAIELANAA 493
IDG I + L+ R +IG VSQ+ + A ++REN+ YG E E + ++LA A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
F++ +P L+T GE G ++SGGQ+QR+AIARA L+NPKIL+LDEAT++LD+ESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 554 DALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
AL +M RTT+V+AHRL+TI +AD I + +G+I G H+EL+ Y + V Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 233 bits (596), Expect = 6e-70
Identities = 63/291 (21%), Positives = 127/291 (43%), Gaps = 28/291 (9%)
Query: 342 QAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVP 401
A + F + K + D E + + P + +L++
Sbjct: 9 TAFWEEGFGELLEKVQQSNGDRK---HSSDENNVSFSHLCLVG--NP---VLKNINLNIE 60
Query: 402 SGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPI 461
G A+ G +GSGK++++ L+ + G + G ++ SQ
Sbjct: 61 KGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSW 107
Query: 462 LFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQR 521
+ +++ENI +G + ++ ++ + I K + +T+ GE G LSGGQ+ R
Sbjct: 108 IMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRAR 166
Query: 522 IAIARAILKNPKILLLDEATSALDAES-ERIVQDALVKIMTSRTTVVVAHRLTTIRNADL 580
I++ARA+ K+ + LLD LD + E++ + + K+M ++T ++V ++ +R AD
Sbjct: 167 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADK 226
Query: 581 IAVVHQGKIVEKGTHDELIKDPEGPYTQLVR----LQEGSKEAEDALATDA 627
I ++HQG GT EL ++ + + ++E ++ T+
Sbjct: 227 ILILHQGSSYFYGTFSELQS-LRPDFSSKLMGYDTFDQFTEERRSSILTET 276
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 231 bits (590), Expect = 5e-69
Identities = 65/266 (24%), Positives = 116/266 (43%), Gaps = 24/266 (9%)
Query: 1013 IFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVA 1072
F L K + + SS + SF + + +N+ L+I G+ +A
Sbjct: 15 GFGELLEKVQ---QSNGDRKHSSDENNV-----SFSHLCLVGNPVLKNINLNIEKGEMLA 66
Query: 1073 LVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETI 1132
+ G +GSGK++++ LI + G + ++ SQ + TI
Sbjct: 67 ITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTI 113
Query: 1133 RTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192
+ NI +G E + +A I+ T +GE GV LSGGQ+ RI++AR
Sbjct: 114 KENIIFGVS--YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLAR 171
Query: 1193 AVLKNPKILLLDEATSALDAES-ERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVK 1251
AV K+ + LLD LD + E+V + + ++M N+T ++V ++ ++ AD I ++
Sbjct: 172 AVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILH 231
Query: 1252 NGVIAEQGSHDALMKITDGAYASLVA 1277
G G+ L + + L+
Sbjct: 232 QGSSYFYGTFSELQSLRPDFSSKLMG 257
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 178 bits (452), Expect = 3e-51
Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 9/228 (3%)
Query: 375 IELRDVYFRYP-ARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
I+L++V Y + +L++ G +++G SGSGKST+++++ P GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 434 VLIDGIDIKKL----QLKWIREKIGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIE 488
V ID I L K R+KIG V Q+ L + EN+ + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE-E 120
Query: 489 LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
A K+ + + A QLSGGQ+QR+AIARA+ NP I+L D+ T ALD+++
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 549 ERIVQDALVKI--MTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGT 594
+ L K+ +T VVV H + R + I + G++ +
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 169 bits (430), Expect = 3e-48
Identities = 66/232 (28%), Positives = 115/232 (49%), Gaps = 18/232 (7%)
Query: 1040 IELRCVSFKYPTR-PDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
I+L+ V+ Y + +N+ L+I G+ V+++G SGSGKST++ +I P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1099 VLLDNIEL----PKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYG----KQGGATEEEI 1149
V +DNI+ R ++G V Q+ L T N+ +G + EE
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1150 IAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSA 1209
+ + ++ L + + + QLSGGQ+QR+AIARA+ NP I+L D+ T A
Sbjct: 122 R---KRALECLKMAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTGA 175
Query: 1210 LDAESERVVQDALERV--MVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQG 1259
LD+++ + L+++ +T VVV H + + + I +K+G + +
Sbjct: 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 169 bits (430), Expect = 5e-48
Identities = 64/245 (26%), Positives = 115/245 (46%), Gaps = 26/245 (10%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
E++L ++ R+ +L + G L+G SG GK+T + ++ +P G
Sbjct: 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFAT-SLRENIAYG------KENATDQEIRTA 486
+ D+ L I +V Q ++ ++ ENIA+ ++ D+ +R A
Sbjct: 63 IYFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 120
Query: 487 IELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 546
EL + +++ P QLSGGQ+QR+A+ARAI+ P +LL+DE S LDA
Sbjct: 121 AELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 169
Query: 547 ESERIVQDALVKIMTSR--TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPE 603
+ ++ + K+ TT+ V H D IAV+++G++++ G+ E+ P
Sbjct: 170 KLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 229
Query: 604 GPYTQ 608
+
Sbjct: 230 SVFVA 234
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 146 bits (370), Expect = 5e-40
Identities = 57/235 (24%), Positives = 107/235 (45%), Gaps = 25/235 (10%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
++L ++ ++ + L L+I G+ + L+G SG GK+T + +I +P G
Sbjct: 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAY-----GKQGGATEEEIIAA 1152
+ + + L + + +V Q ++ T+ NIA+ ++ + A
Sbjct: 63 IYFGDRD--VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 120
Query: 1153 TEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA 1212
E ++ P QLSGGQ+QR+A+ARA++ P +LL+DE S LDA
Sbjct: 121 AELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 169
Query: 1213 ESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264
+ ++ ++++ + TT+ V H D IAV+ G + + GS +
Sbjct: 170 KLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 164 bits (417), Expect = 2e-46
Identities = 77/248 (31%), Positives = 124/248 (50%), Gaps = 25/248 (10%)
Query: 375 IELRDVYFRYPARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
I+L ++ + +Q SLHVP+G ++G SG+GKST+I V P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 434 VLIDGIDIKKL---QLKWIREKIGLVSQEPILFAT-SLRENIAYG------KENATDQEI 483
VL+DG ++ L +L R +IG++ Q L ++ ++ N+A ++ + +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 484 RTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSA 543
+ L D P LSGGQKQR+AIARA+ NPK+LL DEATSA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 544 LDAESERIVQDALVKI--MTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600
LD + R + + L I T +++ H + ++ D +AV+ G+++E+ T E+
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 601 DPEGPYTQ 608
P+ P Q
Sbjct: 231 HPKTPLAQ 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 140 bits (354), Expect = 6e-38
Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 24/240 (10%)
Query: 1040 IELRCVSFKYPTRP-DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
I+L ++ + +Q N+ L +P+G+ ++G SG+GKST+I + P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1099 VLLDNIE---LPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIA-----YGKQGGATEEEI 1149
VL+D E L + +L+ R+Q+G++ Q L + T+ N+A + +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1150 IAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSA 1209
+ + P LSGGQKQR+AIARA+ NPK+LL DEATSA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 1210 LDAESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266
LD + R + + L+ + + T +++ H + +K D +AV+ NG + EQ + +
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 164 bits (416), Expect = 2e-46
Identities = 55/239 (23%), Positives = 100/239 (41%), Gaps = 28/239 (11%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
++L+DV S V +G LVG +G+GKST+++ + G +
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEP-ILFATSLRENIAYGKENATDQEIRTAIELANAA 493
G ++ + +SQ+ FAT + + + + T E+ + A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-- 113
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILK-------NPKILLLDEATSALDA 546
LD G QLSGG+ QR+ +A +L+ ++LLLDE ++LD
Sbjct: 114 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 547 ESERIVQDALVKIMTSRTTVV-VAHRLT-TIRNADLIAVVHQGKIVEKGTHDELIKDPE 603
+ + L + +V +H L T+R+A ++ GK++ G +E++ P
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 224
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 146 bits (370), Expect = 3e-40
Identities = 48/237 (20%), Positives = 94/237 (39%), Gaps = 29/237 (12%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
++L+ V+ L + +G+ + LVG +G+GKST++A + G +
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEP-VLFNETIRTNIAYGKQGGATEEEIIAATEASNA 1158
L + + L +SQ+ F + + + E + A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA--- 112
Query: 1159 HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLK-------NPKILLLDEATSALD 1211
+ +G QLSGG+ QR+ +A VL+ ++LLLDE ++LD
Sbjct: 113 --------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 164
Query: 1212 AESERVVQDALERVMV-NRTTVVVAHRLT-TIKNADIIAVVKNGVIAEQGSHDALMK 1266
+ + L + V+ +H L T+++A ++K G + G + ++
Sbjct: 165 VAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 163 bits (414), Expect = 1e-45
Identities = 69/259 (26%), Positives = 126/259 (48%), Gaps = 38/259 (14%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
++ + D++ RY ++ G SL +G +++G SGSGKST + + P G
Sbjct: 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 434 VLIDGIDIKKL-------------QLKWIREKIGLVSQEPILFAT-SLRENIAYG----- 474
++++G +I + QL+ +R ++ +V Q L++ ++ EN+
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 475 ---KENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531
K +A ++ ++ ++ + K P LSGGQ+QR++IARA+
Sbjct: 119 GLSKHDARERALKYLAKVGIDERAQGKYPV-----------HLSGGQQQRVSIARALAME 167
Query: 532 PKILLLDEATSALDAESERIVQDALVKIMTSRTTVV-VAHRLTTIRN-ADLIAVVHQGKI 589
P +LL DE TSALD E V + ++ T+V V H + R+ + + +HQGKI
Sbjct: 168 PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227
Query: 590 VEKGTHDELIKDPEGPYTQ 608
E+G +++ +P+ P Q
Sbjct: 228 EEEGDPEQVFGNPQSPRLQ 246
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 143 bits (361), Expect = 1e-38
Identities = 56/250 (22%), Positives = 105/250 (42%), Gaps = 37/250 (14%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+ + + +Y ++ + + L +G ++++G SGSGKST + I P G +
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 1100 LLDNIEL-------------PKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAYG--KQGG 1143
+++ + K +L LR ++ +V Q L++ T+ N+ + G
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 1144 ATEEEIIAATEAS-----NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNP 1198
++ + P LSGGQ+QR++IARA+ P
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPV-----------HLSGGQQQRVSIARALAMEP 168
Query: 1199 KILLLDEATSALDA-ESERVVQDALERVMVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIA 1256
+LL DE TSALD V++ + +T VVV H + ++ + + + G I
Sbjct: 169 DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228
Query: 1257 EQGSHDALMK 1266
E+G + +
Sbjct: 229 EEGDPEQVFG 238
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 150 bits (381), Expect = 1e-41
Identities = 61/241 (25%), Positives = 104/241 (43%), Gaps = 14/241 (5%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+ L DV+ + EV SL V G L+G SG GK+T + ++ +P G++
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 435 LIDGIDI----KKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELA 490
I + K + + I +V Q L+ + + +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 491 NAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER 550
+ L GL + +LSGGQ+QR+A+ RAI++ P++ L+DE S LDA+
Sbjct: 121 REV--AELL--GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 551 IVQDALVKI--MTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYT 607
++ L K+ TT+ V H D IAV+++G + + G+ DE+ P +
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFV 236
Query: 608 Q 608
Sbjct: 237 A 237
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 126 bits (318), Expect = 4e-33
Identities = 53/241 (21%), Positives = 102/241 (42%), Gaps = 27/241 (11%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
+ L V + +V R + L + G+ + L+G SG GK+T + +I +P G
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 1099 VLLDNIEL----PKFKLSWLRQQMGLVSQEPVLFNETIRTNI------AYGKQGGATEEE 1148
+ + + + + + + +V Q L+ + ++
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
Query: 1149 IIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATS 1208
+ E ++ P +LSGGQ+QR+A+ RA+++ P++ L+DE S
Sbjct: 120 VREVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLS 168
Query: 1209 ALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265
LDA+ ++ L+++ + TT+ V H D IAV+ GV+ + GS D +
Sbjct: 169 NLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228
Query: 1266 K 1266
Sbjct: 229 D 229
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 148 bits (374), Expect = 9e-41
Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 26/244 (10%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
++L++V + EV + +L + G VG SG GKST++ ++ +G++
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILF-ATSLRENIAYG------KENATDQEIRTAI 487
I + +G+V Q L+ S+ EN+++G K+ +Q +
Sbjct: 58 FIGEKRMND--TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
E+ A +D+ PK LSGGQ+QR+AI R ++ P + LLDE S LDA
Sbjct: 116 EVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 164
Query: 548 SERIVQDALVKI--MTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEG 604
++ + ++ RT + V H AD I V+ G++ + G EL P
Sbjct: 165 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224
Query: 605 PYTQ 608
+
Sbjct: 225 RFVA 228
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 121 bits (306), Expect = 1e-31
Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 25/234 (10%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
++L+ V+ + +V + +++ L I G+ V VG SG GKST++ +I SG +
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAY-----GKQGGATEEEIIAAT 1153
+ + +G+V Q L+ + ++ N+++ G + + +
Sbjct: 58 FIGEKR--MNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 1154 EASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAE 1213
E + + P LSGGQ+QR+AI R ++ P + LLDE S LDA
Sbjct: 116 EVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 164
Query: 1214 SERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264
++ + R+ + RT + V H AD I V+ G +A+ G L
Sbjct: 165 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 218
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 141 bits (357), Expect = 8e-39
Identities = 46/217 (21%), Positives = 97/217 (44%), Gaps = 27/217 (12%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+E+RD+ Y + + ++ + G G +G GK+T++ + + P GE+
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFA-TSLRENIAYGKE----NATDQEIRTAIEL 489
+ +G+ I K+ + KI + +E I+ S+ + + EI A+E
Sbjct: 59 IYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 490 ANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESE 549
KL +LS G +R+ +A +L N +I +LD+ A+D +S+
Sbjct: 114 VEVLDLKKKLG------------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 550 RIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQ 586
V ++++I+ + V+++ R + D+ +H+
Sbjct: 162 HKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 132 bits (333), Expect = 1e-35
Identities = 38/211 (18%), Positives = 95/211 (45%), Gaps = 20/211 (9%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+E+R +S Y D + + ++I G V G +G GK+T++ I + P G +
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAYGKQGGATEEEIIAATEASNA 1158
+ + + + K ++ ++ + +E ++ + ++ + + N
Sbjct: 59 IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV---------NK 104
Query: 1159 HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV 1218
+ + AL ++ ++ +LS G +R+ +A +L N +I +LD+ A+D +S+ V
Sbjct: 105 NEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 164
Query: 1219 QDALERVMVNRTTVVVAHRLTTIKNADIIAV 1249
++ ++ + V+++ R + D+
Sbjct: 165 LKSILEILKEKGIVIISSR-EELSYCDVNEN 194
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 142 bits (359), Expect = 2e-38
Identities = 54/240 (22%), Positives = 107/240 (44%), Gaps = 15/240 (6%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+ ++ + E + G S+ V G ++G +GSGKST+I+++ F D G V
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 435 LIDGIDIKKLQL-KWIREKIGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANA 492
+ DI + + I Q P ++ EN+ G+ + + +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 493 AKFIDKLPK--------GLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
K + + K L + +LSGGQ + + I RA++ NPK++++DE + +
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 545 DAESERIVQDALVKIMTSRTTVV-VAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDP 602
+ + ++++ T + + HRL + N D + V+ G+I+ +G +E IK+
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNV 241
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 123 bits (310), Expect = 7e-32
Identities = 54/245 (22%), Positives = 104/245 (42%), Gaps = 28/245 (11%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+ + + + + + +S+ G ++G +GSGKST+I +I F D G V
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 1100 LLDNIELPKFKLSWL-RQQMGLVSQEPVLFNE-TIRTNIAYG--------------KQGG 1143
+N ++ + + L + Q P E T+ N+ G K+
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 1144 ATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLL 1203
EEE++ +S L + +LSGGQ + + I RA++ NPK++++
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYD-------RKAGELSGGQMKLVEIGRALMTNPKMIVM 174
Query: 1204 DEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSH 1261
DE + + + + + + T +++ HRL + N D + V+ NG I +G
Sbjct: 175 DEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234
Query: 1262 DALMK 1266
+ +K
Sbjct: 235 EEEIK 239
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 141 bits (358), Expect = 2e-38
Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 12/233 (5%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+E++ ++ Y + G L VP G L+G +G+GK+T +S + G++
Sbjct: 7 LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 435 LIDGIDIKKLQLKWIREK-IGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANA 492
+ +G DI I I LV + +F ++ EN+ G N D+E +
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE-----GIKRD 118
Query: 493 AKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIV 552
++I L L + G LSGG++Q +AI RA++ PK+L++DE + L V
Sbjct: 119 LEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 553 QDALVKIMTSRTTVV-VAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPE 603
+ + KI TT++ V A V+ G+IV +G EL+ +
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEM 231
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 127 bits (320), Expect = 2e-33
Identities = 52/231 (22%), Positives = 102/231 (44%), Gaps = 13/231 (5%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
+E++ + Y + + + L +P G+ V L+G +G+GK+T ++ I G +
Sbjct: 7 LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1100 LLDNIELPKFKLS-WLRQQMGLVSQEPVLFNE-TIRTNIAYGKQGGATEEEIIAATEASN 1157
+ + ++ R + LV + +F E T+ N+ G +E I E
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW-- 121
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
I +L + + + G LSGG++Q +AI RA++ PK+L++DE + L
Sbjct: 122 ----IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 177
Query: 1218 VQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266
V + ++++ T ++V A V++ G I +G L+
Sbjct: 178 VFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 138 bits (349), Expect = 2e-37
Identities = 58/241 (24%), Positives = 114/241 (47%), Gaps = 16/241 (6%)
Query: 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
G + ++D+ R + +I G S + G L+G +G+GK+T + ++ P +G
Sbjct: 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 433 EVLIDGIDIKKLQLKWIREKIGLVSQEPILFAT-SLRENIAYGKEN--ATDQEIRTAIEL 489
V + G ++ + + +R+ I + +E + E + + ++ EI +E
Sbjct: 58 IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE- 115
Query: 490 ANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESE 549
+ + GL + + S G +++ IARA++ NP++ +LDE TS LD +
Sbjct: 116 ----RATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 169
Query: 550 RIVQDALVKIMTSRTTVV-VAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYT 607
R V+ L + T++ +H + + D IA++H G IVE GT +EL + +
Sbjct: 170 REVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNI 229
Query: 608 Q 608
+
Sbjct: 230 E 230
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 125 bits (315), Expect = 9e-33
Identities = 54/233 (23%), Positives = 105/233 (45%), Gaps = 15/233 (6%)
Query: 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
GA+ ++ + + +I + + I G+ L+G +G+GK+T + +I P SG
Sbjct: 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAYG-KQGGATEEEIIAATEA 1155
V + + +R+ + + +E + N + + ++ EI E
Sbjct: 58 IVTVFGKN-VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 1156 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE 1215
+ G + +R S G +++ IARA++ NP++ +LDE TS LD +
Sbjct: 117 ATEI-------AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 169
Query: 1216 RVVQDALERVMVNRTTVVVA--HRLTTIKNADIIAVVKNGVIAEQGSHDALMK 1266
R V+ L++ T++V+ + L D IA++ NG I E G+ + L +
Sbjct: 170 REVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 132 bits (333), Expect = 3e-35
Identities = 63/242 (26%), Positives = 115/242 (47%), Gaps = 13/242 (5%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
I +++V + + +V ++++ +G ++G SG+GK+T + ++ P GE
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 434 VLIDGIDIKKLQLKWIRE---KIGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIEL 489
+ D + + KIG+V Q L+ + ENIA+ N + +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 490 ANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESE 549
AK +D + + +LSG Q+QR+A+ARA++K+P +LLLDE S LDA
Sbjct: 122 EEVAKILD-----IHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 550 RIVQDALVKI--MTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPY 606
+ + ++ T +VV+H I AD + V+ +GK+V+ G ++L +P
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236
Query: 607 TQ 608
Sbjct: 237 VA 238
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 111 bits (279), Expect = 6e-28
Identities = 61/238 (25%), Positives = 113/238 (47%), Gaps = 24/238 (10%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
I ++ VS + + V N+ ++I +G+ ++G SG+GK+T + +I P +G
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1099 VLLDNIEL---PKFKLSWLRQQMGLVSQEPVLFNE-TIRTNIAYG-----KQGGATEEEI 1149
+ D+ + K + +++G+V Q L+ T NIA+ + +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 1150 IAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSA 1209
+ + H+ ++ P +LSG Q+QR+A+ARA++K+P +LLLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 1210 LDAESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264
LDA + ++ V + T +VV+H I AD + V+ G + + G + L
Sbjct: 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 130 bits (328), Expect = 1e-34
Identities = 69/240 (28%), Positives = 121/240 (50%), Gaps = 22/240 (9%)
Query: 375 IELRDVYFRYPARPEVQIFA--GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
IE+ + ++ F+ SL V SG ++G +G+GK+ + L+ F+ PD+G
Sbjct: 2 IEIESLSRKWKN------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG 55
Query: 433 EVLIDGIDIKKLQLKWIREKIGLVSQEPILF-ATSLRENIAYGKENATDQEIRTAIELAN 491
+L+DG D+ L + I V Q LF ++++N+ +G ++ + ++ A
Sbjct: 56 RILLDGKDVTDLS--PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR 113
Query: 492 AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI 551
++ + + LSGG++QR+A+ARA++ NPKILLLDE SALD ++
Sbjct: 114 DL--------KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 552 VQDALVKI--MTSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
++ L + T + + H T R AD IAVV GK+++ G +E+ + P
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVA 225
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 113 bits (283), Expect = 1e-28
Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 23/233 (9%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IE+ +S K+ NL L + SG+ ++G +G+GK+ + LI F+ PDSG +
Sbjct: 2 IEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPVLF-NETIRTNIAY--GKQGGATEEEIIAATEAS 1156
LLD LS + + V Q LF + ++ N+ + + + ++
Sbjct: 58 LLDGK--DVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 1157 NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER 1216
+ + P LSGG++QR+A+ARA++ NPKILLLDE SALD ++
Sbjct: 116 KIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 1217 VVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266
++ L + T + + H T + AD IAVV +G + + G + + +
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 124 bits (313), Expect = 2e-32
Identities = 75/229 (32%), Positives = 111/229 (48%), Gaps = 24/229 (10%)
Query: 393 FAGFSLHV---PSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWI 449
F L+V L+G +G+GKS + L+ PD GEV ++G DI L
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPE 68
Query: 450 REKIGLVSQEPILFAT-SLRENIAYGKENATDQE----IRTAIELANAAKFIDKLPKGLD 504
R IG V Q+ LF S+ NIAYG N E +R E A +D+ P
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA--- 125
Query: 505 TMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKI--MTS 562
+LSGG++QR+A+ARA++ P++LLLDE SA+D +++ ++ + L +
Sbjct: 126 --------RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD 177
Query: 563 RTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610
+ V H L AD +AV+ G+IVEKG EL G + +
Sbjct: 178 VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 111 bits (278), Expect = 7e-28
Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119
N+ + L+G +G+GKS + LI PD G V L+ ++ L R+ +G
Sbjct: 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI--TPLPPERRGIG 73
Query: 1120 LVSQEPVLFNE-TIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGV 1178
V Q+ LF ++ NIAYG + E E A G + +
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREM--------AEKLGIAHLLDRKPA 125
Query: 1179 QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAH 1236
+LSGG++QR+A+ARA++ P++LLLDE SA+D +++ V+ + L V + + V H
Sbjct: 126 RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185
Query: 1237 RLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITDGAYASLVA 1277
L AD +AV+ NG I E+G L +G A ++
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLS 227
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 97.4 bits (241), Expect = 1e-23
Identities = 19/197 (9%), Positives = 47/197 (23%), Gaps = 31/197 (15%)
Query: 407 ALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATS 466
+ G+ G GK+T++ + A + + + + + I ++ I +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 467 LRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526
G + A
Sbjct: 64 FTSKKLVG-----------------------------SYGVNVQYFEELAIPILERAYRE 94
Query: 527 AILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQ 586
A K++++DE + + + V I +
Sbjct: 95 AKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPG 154
Query: 587 GKIVE--KGTHDELIKD 601
++E D +++D
Sbjct: 155 AVLIELTPENRDVILED 171
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 94.7 bits (234), Expect = 1e-22
Identities = 22/192 (11%), Positives = 49/192 (25%), Gaps = 30/192 (15%)
Query: 1071 VALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNE 1130
+ + GE G GK+T++ I + + + P+ K + + ++ + ++
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 1131 TIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAI 1190
+ G G V + + A
Sbjct: 63 FFTSKKLVGSYG------------------------------VNVQYFEELAIPILERAY 92
Query: 1191 ARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVV 1250
A K++++DE + N V I +
Sbjct: 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152
Query: 1251 KNGVIAEQGSHD 1262
V+ E +
Sbjct: 153 PGAVLIELTPEN 164
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 77.3 bits (188), Expect = 1e-15
Identities = 53/318 (16%), Positives = 117/318 (36%), Gaps = 4/318 (1%)
Query: 704 MRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALI 763
RRL P L++ IA ++ LL + F D+ S +
Sbjct: 4 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR----SVLLWMP 59
Query: 764 YLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARL 823
+V+G++ L + + ++ + + S+G++ +R+
Sbjct: 60 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRI 119
Query: 824 STDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKF 883
+ D+ + S +L VV+ A+I I+ F +W L+ +++ ++P++ + +K
Sbjct: 120 TYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKR 179
Query: 884 MKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILS 943
+ S + + + + A + + V F +E ++K G++ S
Sbjct: 180 FRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 239
Query: 944 GAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDT 1003
L+ AF Y S T G + VF ++ + + +
Sbjct: 240 SISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQF 299
Query: 1004 TKAKDSAASIFEILDSKP 1021
+ + ++F ILDS+
Sbjct: 300 QRGMAACQTLFAILDSEQ 317
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 70.3 bits (170), Expect = 3e-13
Identities = 54/320 (16%), Positives = 119/320 (37%), Gaps = 7/320 (2%)
Query: 38 FYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINS-FGSSDRSHVVHEVSKV 96
F +L+ +IV I+ I + + FM + L++ FG +DRS ++ +
Sbjct: 4 FRRLWPTI-APFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLL----WM 58
Query: 97 AVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIG 156
+ + L GI +++ C + +R ++ + FFD ++T +
Sbjct: 59 PLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSR 118
Query: 157 RMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMA 216
+ + G + + + G F++ W L+++L+ P + IA ++
Sbjct: 119 ITYDSEQVASSSSGALITVVREGA-SIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS 177
Query: 217 LIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGM 276
+S Q + T EQ + G + V F G++ ++++ ++
Sbjct: 178 KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 237
Query: 277 VSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLN 336
S I ++ L ++ S + GT+ V +++ L +
Sbjct: 238 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNA 297
Query: 337 AFAGGQAAAYKMFETIKRKP 356
F G AA +F + +
Sbjct: 298 QFQRGMAACQTLFAILDSEQ 317
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 75.7 bits (184), Expect = 4e-15
Identities = 48/323 (14%), Positives = 100/323 (30%), Gaps = 7/323 (2%)
Query: 704 MRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALI 763
++R KP + I I I + LL+ +I + I
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61
Query: 764 YLVLGIINLIAVP-----FQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGS 818
+ + + + V + Y K++ IR + + ++ +
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVI 121
Query: 819 VGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGY 878
+ + + L + + TI L I F + L L + P ++ Y
Sbjct: 122 SRVINDVEQTKDF--ILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 879 TQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVR 938
++ + + E ++ V I V SF E+ ++KK L ++
Sbjct: 180 VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239
Query: 939 RGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSA 998
+ F V +G+ L G T G + L + + + A
Sbjct: 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVA 299
Query: 999 MAPDTTKAKDSAASIFEILDSKP 1021
T++ S +F+++D
Sbjct: 300 SFTTLTQSFASMDRVFQLIDEDY 322
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 59.5 bits (142), Expect = 8e-10
Identities = 41/321 (12%), Positives = 88/321 (27%), Gaps = 6/321 (1%)
Query: 40 KLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSF----GSSDRSHVVHEVSK 95
+ F K + I I + L+ + I+ + V H
Sbjct: 4 RYLQFV-KPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIA 62
Query: 96 VAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVI 155
+ + F++ T + IR + F+ +
Sbjct: 63 IGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVIS 122
Query: 156 GRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSM 215
R+ D ++ + + T + L L L P ++
Sbjct: 123 -RVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 216 ALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQG 275
+ K++ A +E + + V GI V SF E + ++ K A++
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 276 MVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCL 335
+ + + + G+ L I GT+ + + L +
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301
Query: 336 NAFAGGQAAAYKMFETIKRKP 356
A+ ++F+ I
Sbjct: 302 TTLTQSFASMDRVFQLIDEDY 322
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (117), Expect = 4e-07
Identities = 27/189 (14%), Positives = 55/189 (29%), Gaps = 7/189 (3%)
Query: 1069 KTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLF 1128
+ V L G G GK+T+I V E + + + +S
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 1129 NETIRTNIAYGKQGGATEEEIIAATEASNAHNFISAL----PHGYETNVGERGVQLSGGQ 1184
+ ++ + + + A + G V + ++
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 1185 KQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNA 1244
+ I R L P ++L +V++ R V V +R +
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENRNHLLP-- 178
Query: 1245 DIIAVVKNG 1253
DI+ V++
Sbjct: 179 DIVTCVQSS 187
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 9e-07
Identities = 20/135 (14%), Positives = 38/135 (28%), Gaps = 5/135 (3%)
Query: 408 LVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSL 467
L G G GK+T+I V + + + I + +S +
Sbjct: 6 LTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVG 65
Query: 468 RENIAYGKENATDQEIRTAIELANAAKFIDK-----LPKGLDTMAGEHGTQLSGGQKQRI 522
E +E Q + A + + G + ++ + I
Sbjct: 66 LEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI 125
Query: 523 AIARAILKNPKILLL 537
R L P ++L
Sbjct: 126 QAVRQTLSTPGTIIL 140
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 8e-04
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 512 TQLSGGQKQRIAI----ARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTV- 566
LSGG+K A+ A + +LDE +ALD + + + + +
Sbjct: 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390
Query: 567 VVAHRLTTIRNAD-LIAVVHQGK 588
V++ + T +D L+ V Q +
Sbjct: 391 VISLKNTMFEKSDALVGVYRQQQ 413
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1283 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 100.0 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.98 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.96 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.96 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.78 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.69 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.54 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.39 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.35 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.27 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.19 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.1 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.99 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.99 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.86 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.8 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.17 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.17 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.88 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.81 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.62 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.5 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.5 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.38 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.35 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.28 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.27 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.18 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.04 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.03 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.01 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.98 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.83 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.74 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.69 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.66 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.66 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.64 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.59 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.57 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.52 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.51 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.44 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.4 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.39 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.33 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.27 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.23 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.23 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.22 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.18 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.16 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.16 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.11 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.11 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.11 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.1 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.09 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.09 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.08 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.02 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.01 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.88 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.84 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.79 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.76 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.75 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.73 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.68 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.63 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.62 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.6 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.4 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.36 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.32 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.32 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.2 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.2 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.19 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.08 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.0 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.98 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.97 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.95 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.93 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.93 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.9 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.88 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.85 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.82 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.78 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.7 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.69 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.68 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.66 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.62 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.58 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.58 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.57 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.56 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.53 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.45 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.42 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.39 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.37 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.31 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.3 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.25 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.25 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.13 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.1 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.1 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.09 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.07 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.06 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.01 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.89 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.87 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.85 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.85 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 92.84 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.82 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.81 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 92.8 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.79 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 92.68 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.65 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.61 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.57 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.53 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.51 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.49 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.45 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.41 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 92.37 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.33 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.22 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.2 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.19 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.16 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 92.13 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 92.13 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.1 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.0 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.96 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.91 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 91.9 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.88 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.85 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 91.85 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.82 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.82 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 91.81 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.79 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.78 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 91.75 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 91.75 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.74 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 91.64 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.63 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.57 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.57 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.55 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.51 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.45 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.44 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 91.36 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.31 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.3 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 91.25 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 91.23 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 91.2 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.19 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 91.17 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 91.12 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 91.1 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 91.07 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.04 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.02 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.98 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 90.93 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.93 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 90.86 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 90.84 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.82 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 90.81 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.81 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 90.76 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 90.76 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.73 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.7 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.58 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.57 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.54 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 90.52 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.5 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.4 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.39 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 90.38 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.33 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.32 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 90.26 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.26 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.24 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 90.21 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.18 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.15 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.13 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 90.11 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 90.11 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.98 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.97 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 89.96 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.95 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 89.92 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 89.89 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 89.88 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 89.86 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.78 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.78 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.75 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 89.74 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 89.72 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.65 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.63 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 89.6 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 89.6 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.6 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 89.6 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.56 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 89.52 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 89.49 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 89.48 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.44 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.4 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.39 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 89.23 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.23 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 89.19 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 89.19 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 89.15 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 89.09 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.02 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 89.02 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 89.01 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 88.99 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.99 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 88.98 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 88.98 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 88.93 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 88.91 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.89 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.84 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.83 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.81 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.79 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 88.76 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 88.75 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 88.73 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.72 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 88.65 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.63 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 88.58 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.57 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 88.53 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 88.51 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 88.5 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 88.35 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 88.33 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 88.32 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 88.27 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.23 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 88.19 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.16 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 88.12 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 88.04 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 87.98 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 87.93 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 87.88 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 87.8 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 87.8 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 87.79 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 87.78 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.76 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 87.75 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 87.64 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 87.63 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 87.63 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 87.63 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 87.62 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 87.6 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 87.57 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 87.55 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 87.55 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 87.51 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.46 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.4 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 87.36 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 87.3 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 87.25 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 87.23 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.2 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 87.18 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 87.16 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 87.12 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 87.01 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 86.92 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.88 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 86.82 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 86.82 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 86.77 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 86.74 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.69 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 86.62 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 86.49 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 86.46 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 86.44 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 86.42 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 86.39 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 86.38 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 86.37 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 86.3 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 86.29 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 86.25 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 86.22 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.13 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 86.09 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 86.05 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 85.99 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 85.84 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.82 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.72 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 85.7 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 85.6 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 85.57 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 85.56 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 85.55 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 85.49 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 85.46 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 85.38 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 85.26 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 85.07 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 85.05 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 84.97 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 84.96 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 84.93 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 84.91 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 84.86 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 84.77 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 84.75 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 84.71 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 84.64 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 84.47 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 84.39 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 84.22 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 84.16 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 84.12 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.99 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 83.98 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 83.94 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 83.92 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 83.75 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 83.68 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 83.63 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 83.6 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 83.6 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 83.55 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 83.55 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 83.53 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 83.51 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 83.39 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 83.35 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 83.11 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 83.03 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 83.0 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 82.86 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 82.81 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 82.79 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 82.78 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 82.53 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 82.37 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 82.28 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 82.1 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 81.99 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 81.66 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 81.63 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.31 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 81.27 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 81.14 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 80.55 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 80.54 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 80.49 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 80.35 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 80.27 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 80.15 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 80.01 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=523.70 Aligned_cols=244 Identities=51% Similarity=0.822 Sum_probs=234.4
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH
Q ss_conf 77765489998789889998864432215885099799998399998889999996027899656898893189999278
Q 000789 1034 SSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW 1113 (1283)
Q Consensus 1034 ~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~ 1113 (1283)
...+|.|+|+||+|+|++. ..++|+||||+|++||++||||+||||||||+++|+|+|+|++|+|.+||.|+++++.++
T Consensus 11 ~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 11 EIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 89 (255)
T ss_dssp CCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred CCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHH
T ss_conf 7778879999889995999-976064438998399899998899980999999997127863000153998753078888
Q ss_pred HHCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 75032888157777712199997248999999999999999807289998399876542379999899469999999999
Q 000789 1114 LRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1114 lR~~i~~V~Qd~~Lf~gTIreNl~~~~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARA 1193 (1283)
||++|+||||++.+|++||+|||.++. +..++++++++++.+++++++..+|+||||.++++|.+||||||||+|||||
T Consensus 90 lr~~i~~v~Q~~~lf~~Ti~eNi~~g~-~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARa 168 (255)
T d2hyda1 90 LRNQIGLVQQDNILFSDTVKENILLGR-PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 168 (255)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHGGGC-SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred HHHEEEEEECCCCCCCCCHHHHHHCCC-CCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 634145651015689987999985158-6799999999999969799997362420103338889849999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf 71599888972666799979899999999987299649998049147761398999959889880596789710691449
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYA 1273 (1283)
Q Consensus 1194 ll~~p~ILiLDEpTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIivl~~G~Ive~Gt~~eLl~~~~g~y~ 1273 (1283)
++++|+|+|||||||+||++++..|++.|+++.+++|+|+||||++.++.||+|++|++|+|+++|+|+||+++ ++.|+
T Consensus 169 l~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~ 247 (255)
T d2hyda1 169 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYE 247 (255)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHH
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHH
T ss_conf 85599899983765447977999999999987538889999689999985999999989999998899999868-84999
Q ss_pred HHHHHHH
Q ss_conf 9999742
Q 000789 1274 SLVALHV 1280 (1283)
Q Consensus 1274 ~L~~~~~ 1280 (1283)
+||..|.
T Consensus 248 ~l~~~Q~ 254 (255)
T d2hyda1 248 HLYSIQN 254 (255)
T ss_dssp HHHTTTT
T ss_pred HHHHHCC
T ss_conf 9999747
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=518.80 Aligned_cols=241 Identities=47% Similarity=0.758 Sum_probs=231.9
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCE
Q ss_conf 48999878988999886443221588509979999839999888999999602789965689889318999927875032
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
+|+|+||+|+|++. .+++|+||||+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 88815777771219999724899999999999999980728999839987654237999989946999999999971599
Q 000789 1119 GLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNP 1198 (1283)
Q Consensus 1119 ~~V~Qd~~Lf~gTIreNl~~~~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAll~~p 1198 (1283)
+||||+|.+|++||+|||.++. +.+++++++++++.+++.+++..+|+|++|.++++|.+||||||||+|||||++++|
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p 158 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLAN-PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 158 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTS-TTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 8982446557840003522357-554388899999997557888763201344327878866988989875443444165
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
Q ss_conf 88897266679997989999999998729964999804914776139899995988988059678971069144999997
Q 000789 1199 KILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278 (1283)
Q Consensus 1199 ~ILiLDEpTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIivl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~ 1278 (1283)
+|||||||||+||+.++..|++.|+++.+++|+|+||||++.++.||+|+||++|+|+|+|+|+||++++++.|++||+.
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 159 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 13556477655598999999999999858998999978899998499999998999999889999982998789999998
Q ss_pred HHC
Q ss_conf 420
Q 000789 1279 HVS 1281 (1283)
Q Consensus 1279 ~~~ 1281 (1283)
|.+
T Consensus 239 Q~d 241 (241)
T d2pmka1 239 QSD 241 (241)
T ss_dssp HCC
T ss_pred HCC
T ss_conf 139
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=516.63 Aligned_cols=246 Identities=51% Similarity=0.815 Sum_probs=235.7
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH
Q ss_conf 77765489998789889998864432215885099799998399998889999996027899656898893189999278
Q 000789 1034 SSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW 1113 (1283)
Q Consensus 1034 ~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~ 1113 (1283)
....|.|+|+||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|++||.|+++++.++
T Consensus 8 ~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 8 DRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS 86 (253)
T ss_dssp SCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHH
T ss_pred CCCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHH
T ss_conf 7783079999889992999-976353328998599999999999985999999986216888468987880121110665
Q ss_pred HHCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 75032888157777712199997248999999999999999807289998399876542379999899469999999999
Q 000789 1114 LRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1114 lR~~i~~V~Qd~~Lf~gTIreNl~~~~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARA 1193 (1283)
||++++||||++.+|++|+++|+.++.....++++++++++.+++.+++..+|+||||.++++|.+||||||||||||||
T Consensus 87 ~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa 166 (253)
T d3b60a1 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 166 (253)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred HHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 42068799502544786202433205722089999999999981799997355441014348889849999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf 71599888972666799979899999999987299649998049147761398999959889880596789710691449
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYA 1273 (1283)
Q Consensus 1194 ll~~p~ILiLDEpTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIivl~~G~Ive~Gt~~eLl~~~~g~y~ 1273 (1283)
|+++|+|||||||||+||+.++..|++.|+++.+++|+|+||||++.++.||+|+||++|+|+|+|+|+||+++ ++.|+
T Consensus 167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~ 245 (253)
T d3b60a1 167 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYA 245 (253)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHH
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHH
T ss_conf 95499889951644458988999999999875227889999887999985999999989999998899999868-93999
Q ss_pred HHHHHHHC
Q ss_conf 99997420
Q 000789 1274 SLVALHVS 1281 (1283)
Q Consensus 1274 ~L~~~~~~ 1281 (1283)
+||..|..
T Consensus 246 ~l~~~Q~g 253 (253)
T d3b60a1 246 QLHKMQFG 253 (253)
T ss_dssp HHHHHTCC
T ss_pred HHHHHCCC
T ss_conf 99997259
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=508.10 Aligned_cols=242 Identities=43% Similarity=0.742 Sum_probs=231.0
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH
Q ss_conf 77654899987898899988644322158850997999983999988899999960278996568988931899992787
Q 000789 1035 SVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWL 1114 (1283)
Q Consensus 1035 ~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l 1114 (1283)
..+|.|+|+||+|+||++++.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 50328881577777121999972489999999999999998072899983998765423799998994699999999997
Q 000789 1115 RQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAV 1194 (1283)
Q Consensus 1115 R~~i~~V~Qd~~Lf~gTIreNl~~~~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAl 1194 (1283)
|++|+||||+|.+|++||+||+.++.....+++++.++++.+++.+++..+|+|+++.++++|.+||||||||+|||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf 159988897266679997989999999998729--964999804914776139899995988988059678971069144
Q 000789 1195 LKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAY 1272 (1283)
Q Consensus 1195 l~~p~ILiLDEpTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrIivl~~G~Ive~Gt~~eLl~~~~g~y 1272 (1283)
+++|+|+|||||||+||+.++..|++.|+++.+ ++|+|+||||++.++.||||+||++|+|+++|+|+||+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHH
T ss_conf 568707871675765685368999999999765069899999597999985999999989999998899999859-7588
Q ss_pred HHHHH
Q ss_conf 99999
Q 000789 1273 ASLVA 1277 (1283)
Q Consensus 1273 ~~L~~ 1277 (1283)
++||+
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 99962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=508.29 Aligned_cols=239 Identities=43% Similarity=0.727 Sum_probs=230.6
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEE
Q ss_conf 89998789889998864432215885099799998399998889999996027899656898893189999278750328
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++||+|+|++ .+++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|.+||.|+++++.+++|++|+
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 799988998799--984142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88157777712199997248999999999999999807289998399876542379999899469999999999715998
Q 000789 1120 LVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPK 1199 (1283)
Q Consensus 1120 ~V~Qd~~Lf~gTIreNl~~~~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAll~~p~ 1199 (1283)
||||||.+|++||+||+.++..+..++++++++++.+++.+++..+|++++|.++++|.+||||||||+|||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
Q ss_conf 88972666799979899999999987299649998049147761398999959889880596789710691449999974
Q 000789 1200 ILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALH 1279 (1283)
Q Consensus 1200 ILiLDEpTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIivl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~~ 1279 (1283)
|||||||||+||+.++..|++.|+++.+++|+|+||||++.++.||||+||++|+|+++|+|+||+++ ++.|++|+..|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHHH
T ss_conf 99965886556988999998878887179989999787999984999999989999999999999868-96999999998
Q ss_pred HC
Q ss_conf 20
Q 000789 1280 VS 1281 (1283)
Q Consensus 1280 ~~ 1281 (1283)
..
T Consensus 239 ~~ 240 (242)
T d1mv5a_ 239 LT 240 (242)
T ss_dssp CC
T ss_pred HH
T ss_conf 50
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=469.29 Aligned_cols=240 Identities=45% Similarity=0.772 Sum_probs=231.3
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 09999799998999998653121188808989999869998399999899729999986699999606998988874451
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i 453 (1283)
+|+|+||+|+|+++ .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.|+.+++..++|+++
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 88826887880108999843999999999999999932999998488986530038999899578999989988701998
Q 000789 454 GLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPK 533 (1283)
Q Consensus 454 ~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~~~~ 533 (1283)
+||+|+|++|++||+|||.++.++.+++++..+++.+++.+++..+|.|++|.++++|.+||||||||++||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHH
Q ss_conf 88982787789999899999999987089839998048213420688999959889673394677309997038899975
Q 000789 534 ILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613 (1283)
Q Consensus 534 illLDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 613 (1283)
|+|||||||+||+.++..+.+.++++.+++|+|+||||++.++.||+|++|++|+|+++|+|+++++++++.|+++++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
T ss_conf 35564776555989999999999998589989999788999984999999989999998899999829987899999981
Q ss_pred H
Q ss_conf 1
Q 000789 614 E 614 (1283)
Q Consensus 614 ~ 614 (1283)
.
T Consensus 240 ~ 240 (241)
T d2pmka1 240 S 240 (241)
T ss_dssp C
T ss_pred C
T ss_conf 3
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=471.32 Aligned_cols=243 Identities=51% Similarity=0.803 Sum_probs=232.8
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH
Q ss_conf 67556099997999989999986531211888089899998699983999998997299999866999996069989888
Q 000789 369 EKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW 448 (1283)
Q Consensus 369 ~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 448 (1283)
...+|.|+|+||+|+|+++ ..++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.|+++++..+
T Consensus 11 ~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 11 EIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 89 (255)
T ss_dssp CCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred CCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHH
T ss_conf 7778879999889995999-976064438998399899998899980999999997127863000153998753078888
Q ss_pred HHCCCEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 74451888268878801089998439999999999999999329999984889865300389998995789999899887
Q 000789 449 IREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAI 528 (1283)
Q Consensus 449 ~~~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal 528 (1283)
+|++++||+|+|++|++||+|||.++.++.+++++.++++.+++++++..+|+|++|.++++|.+||||||||++||||+
T Consensus 90 lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal 169 (255)
T d2hyda1 90 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 169 (255)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred HHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 63414565101568998799998515867999999999999697999973624201033388898499999999999998
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHCCCCCHHHH
Q ss_conf 01998889827877899998999999999870898399980482134206889999598896733946773099970388
Q 000789 529 LKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608 (1283)
Q Consensus 529 ~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 608 (1283)
+++|+|+|||||||+||++++..+.+.+..+.+++|+|+||||++.+..||+|++|++|+|++.|+|++|+++ ++.|++
T Consensus 170 ~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~ 248 (255)
T d2hyda1 170 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEH 248 (255)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHH
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHH
T ss_conf 5599899983765447977999999999987538889999689999985999999989999998899999868-849999
Q ss_pred HHHHH
Q ss_conf 99975
Q 000789 609 LVRLQ 613 (1283)
Q Consensus 609 ~~~~~ 613 (1283)
+|+.|
T Consensus 249 l~~~Q 253 (255)
T d2hyda1 249 LYSIQ 253 (255)
T ss_dssp HHTTT
T ss_pred HHHHC
T ss_conf 99974
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=462.95 Aligned_cols=245 Identities=51% Similarity=0.825 Sum_probs=232.4
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH
Q ss_conf 67556099997999989999986531211888089899998699983999998997299999866999996069989888
Q 000789 369 EKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW 448 (1283)
Q Consensus 369 ~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 448 (1283)
+...|.|+|+||+|+|+++ +.++|+|+||++++||+++||||||||||||+++|+|+++|++|+|.+||.++++++..+
T Consensus 8 ~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 8 DRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS 86 (253)
T ss_dssp SCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHH
T ss_pred CCCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHH
T ss_conf 7783079999889992999-976353328998599999999999985999999986216888468987880121110665
Q ss_pred HHCCCEEECCCCCCCCCCHHHHHHCCCC-CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 7445188826887880108999843999-999999999999932999998488986530038999899578999989988
Q 000789 449 IREKIGLVSQEPILFATSLRENIAYGKE-NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARA 527 (1283)
Q Consensus 449 ~~~~i~~v~Q~~~l~~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARa 527 (1283)
+|++++||+|+|++|++|+++|+.++.+ ..+++++.++++.+++.++++.+|+|++|.++++|.+|||||||||+||||
T Consensus 87 ~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa 166 (253)
T d3b60a1 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 166 (253)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred HHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 42068799502544786202433205722089999999999981799997355441014348889849999999999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHCCCCCHHH
Q ss_conf 70199888982787789999899999999987089839998048213420688999959889673394677309997038
Q 000789 528 ILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYT 607 (1283)
Q Consensus 528 l~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 607 (1283)
++++|+|||||||||+||+.++..+.+.|+++.+++|+|+||||++.+..||+|++|++|+|+++|+|++|+++ ++.|+
T Consensus 167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~ 245 (253)
T d3b60a1 167 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYA 245 (253)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHH
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHH
T ss_conf 95499889951644458988999999999875227889999887999985999999989999998899999868-93999
Q ss_pred HHHHHHHC
Q ss_conf 89997513
Q 000789 608 QLVRLQEG 615 (1283)
Q Consensus 608 ~~~~~~~~ 615 (1283)
++|+.|.+
T Consensus 246 ~l~~~Q~g 253 (253)
T d3b60a1 246 QLHKMQFG 253 (253)
T ss_dssp HHHHHTCC
T ss_pred HHHHHCCC
T ss_conf 99997259
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=456.38 Aligned_cols=241 Identities=41% Similarity=0.713 Sum_probs=227.1
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH
Q ss_conf 75560999979999899999865312118880898999986999839999989972999998669999960699898887
Q 000789 370 KIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWI 449 (1283)
Q Consensus 370 ~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 449 (1283)
..++.|+|+||+|+|+++++..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.|+.+++..++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCCEEECCCCCCCCCCHHHHHHCCCC-CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 445188826887880108999843999-9999999999999329999984889865300389998995789999899887
Q 000789 450 REKIGLVSQEPILFATSLRENIAYGKE-NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAI 528 (1283)
Q Consensus 450 ~~~i~~v~Q~~~l~~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal 528 (1283)
|++++||+|+|++|++|++||+.++.. ....+++..+++.+++.+++..+|+|+++.+++.|.+||||||||++||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHCCCCCHH
Q ss_conf 019988898278778999989999999998708--983999804821342068899995988967339467730999703
Q 000789 529 LKNPKILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPY 606 (1283)
Q Consensus 529 ~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 606 (1283)
+++|+|+|||||||+||+.++..+.+.+.++.+ ++|+|+||||++.+..||+|++|++|+|+++|+|++|+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHH
T ss_conf 568707871675765685368999999999765069899999597999985999999989999998899999859-7588
Q ss_pred HHHHH
Q ss_conf 88999
Q 000789 607 TQLVR 611 (1283)
Q Consensus 607 ~~~~~ 611 (1283)
+++++
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 99962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=452.92 Aligned_cols=236 Identities=46% Similarity=0.753 Sum_probs=224.4
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCE
Q ss_conf 99997999989999986531211888089899998699983999998997299999866999996069989888744518
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~ 454 (1283)
|+++||+|+|++. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||.++.+++..++|++|+
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 7999889987999--84142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCCCCHHHHHHCCCC-CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 8826887880108999843999-999999999999932999998488986530038999899578999989988701998
Q 000789 455 LVSQEPILFATSLRENIAYGKE-NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPK 533 (1283)
Q Consensus 455 ~v~Q~~~l~~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~~~~ 533 (1283)
||+|+|++|++|++||+.++.. ..++++++.+++.+.+.+++..+|+|+++.++++|.+||||||||++||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHH
Q ss_conf 88982787789999899999999987089839998048213420688999959889673394677309997038899975
Q 000789 534 ILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613 (1283)
Q Consensus 534 illLDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 613 (1283)
|+|||||||+||+.++..+++.++++.+++|+|+||||++.+..||+|++|++|+|+++|+|++|+++ ++.|+++++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHHH
T ss_conf 99965886556988999998878887179989999787999984999999989999999999999868-96999999998
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=418.76 Aligned_cols=220 Identities=26% Similarity=0.429 Sum_probs=201.8
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHC
Q ss_conf 65489998789889998864432215885099799998399998889999996027899656898893189999278750
Q 000789 1037 GGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116 (1283)
Q Consensus 1037 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~ 1116 (1283)
...|.|+|++|.+ .|||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 36 ~~~i~~~~~~~~g-----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------- 97 (281)
T d1r0wa_ 36 ENNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 97 (281)
T ss_dssp ----CHHHHHHTT-----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------
T ss_pred CCCEEEEECCCCC-----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------
T ss_conf 8967999769899-----7677375999859999999989998299999999579747882899999-------------
Q ss_pred CEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 32888157777712199997248999999999999999807289998399876542379999899469999999999715
Q 000789 1117 QMGLVSQEPVLFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLK 1196 (1283)
Q Consensus 1117 ~i~~V~Qd~~Lf~gTIreNl~~~~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAll~ 1196 (1283)
+++|+||++.+|++||+||+.++. ..++..++.+++.+.+.+++..+|+++++.++++|.+||||||||++|||||++
T Consensus 98 ~i~~v~Q~~~l~~~tv~eni~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~ 175 (281)
T d1r0wa_ 98 RVSFCSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYK 175 (281)
T ss_dssp CEEEECSSCCCCSEEHHHHHTTTS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCCCEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 999981643026760321420333--456057999999977699998461233235555423779999999999999986
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHH
Q ss_conf 9988897266679997989999999-998729964999804914776139899995988988059678971069144999
Q 000789 1197 NPKILLLDEATSALDAESERVVQDA-LERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275 (1283)
Q Consensus 1197 ~p~ILiLDEpTSaLD~~te~~I~~~-l~~~~~~~TvI~IaHrl~ti~~~DrIivl~~G~Ive~Gt~~eLl~~~~g~y~~L 1275 (1283)
+|+|||||||||+||+.++..|++. +....+++|+|+||||++.++.||||++|++|+|+++|+|+||++. ++.|++.
T Consensus 176 ~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~ 254 (281)
T d1r0wa_ 176 DADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSK 254 (281)
T ss_dssp CCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHH
T ss_pred CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCC-CCHHHHH
T ss_conf 963513338554489899999999999886289999999252899985999999989999998789999605-9489998
Q ss_pred HH
Q ss_conf 99
Q 000789 1276 VA 1277 (1283)
Q Consensus 1276 ~~ 1277 (1283)
+.
T Consensus 255 ~~ 256 (281)
T d1r0wa_ 255 LM 256 (281)
T ss_dssp HH
T ss_pred HC
T ss_conf 72
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=377.57 Aligned_cols=220 Identities=26% Similarity=0.438 Sum_probs=190.9
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCE
Q ss_conf 48999878988999886443221588509979999839999888999999602789965689889318999927875032
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++|++++|+ +..+|+||||+|++||.+||+||||||||||++++.|+++|++|+|.+||+|++..+.. |+.|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf 499987999999---99998130678879989999999998299999999758999878799916413547700--0158
Q ss_pred EEECCCCCCCH-HHHHHHHHCCCC-CCCCHHHHH----HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88815777771-219999724899-999999999----999980728999839987654237999989946999999999
Q 000789 1119 GLVSQEPVLFN-ETIRTNIAYGKQ-GGATEEEII----AATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192 (1283)
Q Consensus 1119 ~~V~Qd~~Lf~-gTIreNl~~~~~-~~~sd~ei~----~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialAR 1192 (1283)
+||||++.+|+ .|++||+.++.. ...+.+++. ++++.+++ +.........||||||||++|||
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGGq~QRvaiAr 149 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI-----------EELLNRYPAQLSGGQRQRVAVAR 149 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTC-----------GGGTTSCTTTCCSSCHHHHHHHH
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-----------HHHHCCCHHHCCHHHHHHHHHHH
T ss_conf 9980033534222099999999987399999999999999987598-----------55660995469999988999976
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 9715998889726667999798999999999872--99649998049147761-39899995988988059678971069
Q 000789 1193 AVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITD 1269 (1283)
Q Consensus 1193 All~~p~ILiLDEpTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIivl~~G~Ive~Gt~~eLl~~~~ 1269 (1283)
||+.+|+||+||||||+||+.+...|++.++++. .++|+|+|||+++.+.. ||||++|++|+|++.|+|+|+++++.
T Consensus 150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~ 229 (239)
T d1v43a3 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 229 (239)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 64049982430688666898999899999999987319807999489999998699999998999999859999986899
Q ss_pred CHHHH
Q ss_conf 14499
Q 000789 1270 GAYAS 1274 (1283)
Q Consensus 1270 g~y~~ 1274 (1283)
..|-+
T Consensus 230 ~~~~~ 234 (239)
T d1v43a3 230 SVFVA 234 (239)
T ss_dssp BHHHH
T ss_pred CHHHH
T ss_conf 98999
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=381.77 Aligned_cols=218 Identities=28% Similarity=0.472 Sum_probs=191.0
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEE
Q ss_conf 89998789889998864432215885099799998399998889999996027899656898893189999278750328
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++||+++|+ +..+|+||||+|++||.+||+||||||||||++++.|+++|++|+|++||.++.+.+.. |+.|+
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEE
T ss_conf 99999999989---99998111778869989999989998299999999658788888899999977888644--43222
Q ss_pred EECCCCCCCHH-HHHHHHHCCCC-CCCC----HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88157777712-19999724899-9999----999999999807289998399876542379999899469999999999
Q 000789 1120 LVSQEPVLFNE-TIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARA 1193 (1283)
Q Consensus 1120 ~V~Qd~~Lf~g-TIreNl~~~~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARA 1193 (1283)
||||++.+|+. |++||+.++.. ...+ ++.+.++++.+++.++....| ..||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHH
T ss_conf 34334202643337889789998759988999999999997578865664896-----------5699999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCC
Q ss_conf 715998889726667999798999999999872--99649998049147761-398999959889880596789710691
Q 000789 1194 VLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITDG 1270 (1283)
Q Consensus 1194 ll~~p~ILiLDEpTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIivl~~G~Ive~Gt~~eLl~~~~g 1270 (1283)
|+.+|++|+|||||++||+.+...|++.|+++. .++|+|+|||+++.+.. ||||++|++|+|++.|+|+|+++++..
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 224 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCC
T ss_conf 70399889975888788988998999999999874298799994899999996999999979999998089999738999
Q ss_pred HHH
Q ss_conf 449
Q 000789 1271 AYA 1273 (1283)
Q Consensus 1271 ~y~ 1273 (1283)
.|-
T Consensus 225 ~~v 227 (232)
T d2awna2 225 RFV 227 (232)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 799
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=383.66 Aligned_cols=223 Identities=27% Similarity=0.397 Sum_probs=191.5
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC---HHHHH
Q ss_conf 489998789889998864432215885099799998399998889999996027899656898893189999---27875
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK---LSWLR 1115 (1283)
Q Consensus 1039 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---~~~lR 1115 (1283)
.|+++||+++|+.. +..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+ ...+|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred CCEEEECCCCCCCHH-HHHHHHHCCCC-CCCCHHH----HHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 032888157777712-19999724899-9999999----99999980728999839987654237999989946999999
Q 000789 1116 QQMGLVSQEPVLFNE-TIRTNIAYGKQ-GGATEEE----IIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIA 1189 (1283)
Q Consensus 1116 ~~i~~V~Qd~~Lf~g-TIreNl~~~~~-~~~sd~e----i~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRia 1189 (1283)
++|+||+|++.||+. |++||+.++.. ...+.++ +.++++.+++.++... ....||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH-----------FPRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHC-----------CHHHCCHHHHHHHH
T ss_conf 4514773043346666577776655676137999999999999866591766648-----------95459999985899
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9999715998889726667999798999999999872--99649998049147761-39899995988988059678971
Q 000789 1190 IARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1190 lARAll~~p~ILiLDEpTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIivl~~G~Ive~Gt~~eLl~ 1266 (1283)
|||||+.+|++|++|||||+||+.+...+++.|+++. .+.|+|+|||+++.+.. ||||++|++|+|++.|+|+|+++
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 87577604661454478667998998899899999986359879999799999999699999998999999869999986
Q ss_pred CCCCHHH
Q ss_conf 0691449
Q 000789 1267 ITDGAYA 1273 (1283)
Q Consensus 1267 ~~~g~y~ 1273 (1283)
++...|-
T Consensus 231 ~P~~~~~ 237 (242)
T d1oxxk2 231 NPVSIQV 237 (242)
T ss_dssp SCSSHHH
T ss_pred CCCCHHH
T ss_conf 8999799
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=380.86 Aligned_cols=216 Identities=30% Similarity=0.506 Sum_probs=189.8
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEE
Q ss_conf 89998789889998864432215885099799998399998889999996027899656898893189999278750328
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
|+++|++++|++ .+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|++||.|+.+.+.. |+.|+
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf 899989999499----788433789879989999989998299999999647688878899956734652165--74056
Q ss_pred EECCCCCCCHH-HHHHHHHCCC--CCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 88157777712-1999972489--99999999999999807289998399876542379999899469999999999715
Q 000789 1120 LVSQEPVLFNE-TIRTNIAYGK--QGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLK 1196 (1283)
Q Consensus 1120 ~V~Qd~~Lf~g-TIreNl~~~~--~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAll~ 1196 (1283)
||||++.+|+. |++||+.++. .+...++++.++++..++.++.+ .....||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH-----------CCHHHCCHHHHCCHHHHHHHHC
T ss_conf 15121111746657788888776405538999999999825655575-----------8955479998401403043443
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf 998889726667999798999999999872--99649998049147761-39899995988988059678971069144
Q 000789 1197 NPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITDGAY 1272 (1283)
Q Consensus 1197 ~p~ILiLDEpTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIivl~~G~Ive~Gt~~eLl~~~~g~y 1272 (1283)
+|++||||||||+||+.+...+++.++++. .+.|+|+|||+++.+.. ||||++|.+|+|+++|+|+|+++++...|
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 6771443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=382.37 Aligned_cols=223 Identities=31% Similarity=0.476 Sum_probs=191.3
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH---HH
Q ss_conf 899987898899988-64432215885099799998399998889999996027899656898893189999278---75
Q 000789 1040 IELRCVSFKYPTRPD-VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW---LR 1115 (1283)
Q Consensus 1040 I~~~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~---lR 1115 (1283)
|+++||+++|+.+.. ..+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.|+...+.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCEEEECCCCCCCHH-HHHHHHHCCCC-CCCC----HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 032888157777712-19999724899-9999----99999999980728999839987654237999989946999999
Q 000789 1116 QQMGLVSQEPVLFNE-TIRTNIAYGKQ-GGAT----EEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIA 1189 (1283)
Q Consensus 1116 ~~i~~V~Qd~~Lf~g-TIreNl~~~~~-~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRia 1189 (1283)
++|+||||++.+|+. |++||+.++.. ...+ ++.+.++++.+++.++.. .....||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~-----------~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-----------SYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTS-----------SCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH-----------CCHHHCCHHHHHHHH
T ss_conf 166430225222799649999999999849998999999999999769903554-----------894349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9999715998889726667999798999999999872-9-9649998049147761-39899995988988059678971
Q 000789 1190 IARAVLKNPKILLLDEATSALDAESERVVQDALERVM-V-NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1190 lARAll~~p~ILiLDEpTSaLD~~te~~I~~~l~~~~-~-~~TvI~IaHrl~ti~~-~DrIivl~~G~Ive~Gt~~eLl~ 1266 (1283)
|||||+.+|++||+||||++||+.+...|++.|+++. + +.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred CCCCHHH
Q ss_conf 0691449
Q 000789 1267 ITDGAYA 1273 (1283)
Q Consensus 1267 ~~~g~y~ 1273 (1283)
++...|.
T Consensus 231 ~P~~~~t 237 (240)
T d3dhwc1 231 HPKTPLA 237 (240)
T ss_dssp SSCCTTT
T ss_pred CCCCHHH
T ss_conf 8998577
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=385.28 Aligned_cols=219 Identities=26% Similarity=0.464 Sum_probs=197.0
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHC
Q ss_conf 56099997999989999986531211888089899998699983999998997299999866999996069989888744
Q 000789 372 EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451 (1283)
Q Consensus 372 ~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~ 451 (1283)
...|.|+|++|. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~i~~~~~~~~-----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------- 97 (281)
T d1r0wa_ 36 ENNVSFSHLCLV-----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 97 (281)
T ss_dssp ----CHHHHHHT-----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------
T ss_pred CCCEEEEECCCC-----CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------
T ss_conf 896799976989-----97677375999859999999989998299999999579747882899999-------------
Q ss_pred CCEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 51888268878801089998439999999999999999329999984889865300389998995789999899887019
Q 000789 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKN 531 (1283)
Q Consensus 452 ~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~~ 531 (1283)
+++|++|++++|++|++||+.++.. ..+.++..+++.+.+..++..+|+++++.+++.|.+||||||||++||||++++
T Consensus 98 ~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~ 176 (281)
T d1r0wa_ 98 RVSFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD 176 (281)
T ss_dssp CEEEECSSCCCCSEEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCCCEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9999816430267603214203334-560579999999776999984612332355554237799999999999999869
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHH
Q ss_conf 988898278778999989999999-9987089839998048213420688999959889673394677309997038899
Q 000789 532 PKILLLDEATSALDAESERIVQDA-LVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610 (1283)
Q Consensus 532 ~~illLDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 610 (1283)
|+|||||||||+||+.++..+.+. +..+..++|+|+|||+++.++.||+|++|++|+|++.|+|+||+.. ...|...+
T Consensus 177 p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~~ 255 (281)
T d1r0wa_ 177 ADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSKL 255 (281)
T ss_dssp CSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHHH
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCC-CCHHHHHH
T ss_conf 63513338554489899999999999886289999999252899985999999989999998789999605-94899987
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=381.51 Aligned_cols=221 Identities=26% Similarity=0.449 Sum_probs=189.9
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH----H
Q ss_conf 489998789889998864432215885099799998399998889999996027899656898893189999278----7
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW----L 1114 (1283)
Q Consensus 1039 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~----l 1114 (1283)
.|+++||+++|+ +..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 189986999989---99998560668869989999999998099999999648788989899999980356644424532
Q ss_pred HCCEEEECCCCCCCHH-HHHHHHHCCCC-CCCCHHH----HHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 5032888157777712-19999724899-9999999----9999998072899983998765423799998994699999
Q 000789 1115 RQQMGLVSQEPVLFNE-TIRTNIAYGKQ-GGATEEE----IIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRI 1188 (1283)
Q Consensus 1115 R~~i~~V~Qd~~Lf~g-TIreNl~~~~~-~~~sd~e----i~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRi 1188 (1283)
|+.|+||||++.||+. |++||+.++.. ...+.++ +.+.++.+++.++... ....||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~-----------~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-----------KPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-----------CGGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCC-----------CHHHCCHHHHHHH
T ss_conf 25512002212223101166763306877299989999999999987599667629-----------9334999999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999715998889726667999798999999999872--99649998049147761-3989999598898805967897
Q 000789 1189 AIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALM 1265 (1283)
Q Consensus 1189 alARAll~~p~ILiLDEpTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrIivl~~G~Ive~Gt~~eLl 1265 (1283)
+|||||+.+|++|+|||||++||+.+...|++.|+++. .+.|+|+|||+++.+.. ||||++|++|+|++.|+|+|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999826998898258876569899989999999998636988999959999999969999999899999985999998
Q ss_pred HCCCCHHH
Q ss_conf 10691449
Q 000789 1266 KITDGAYA 1273 (1283)
Q Consensus 1266 ~~~~g~y~ 1273 (1283)
+++...|-
T Consensus 229 ~~P~~~~~ 236 (240)
T d1g2912 229 DKPANTFV 236 (240)
T ss_dssp HSCSBHHH
T ss_pred HCCCCHHH
T ss_conf 28999898
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=377.59 Aligned_cols=212 Identities=31% Similarity=0.466 Sum_probs=177.3
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH----
Q ss_conf 899987898899988-644322158850997999983999988899999960278996568988931899992787----
Q 000789 1040 IELRCVSFKYPTRPD-VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWL---- 1114 (1283)
Q Consensus 1040 I~~~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l---- 1114 (1283)
|+++||+++|+.... ..+|+||||+|++||.+||+||||||||||++++.|+++|++|+|++||.|+..++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCEEEECCCCCCCHH-HHHHHHHCCC----CCCCCHHHHH----HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 5032888157777712-1999972489----9999999999----99998072899983998765423799998994699
Q 000789 1115 RQQMGLVSQEPVLFNE-TIRTNIAYGK----QGGATEEEII----AATEASNAHNFISALPHGYETNVGERGVQLSGGQK 1185 (1283)
Q Consensus 1115 R~~i~~V~Qd~~Lf~g-TIreNl~~~~----~~~~sd~ei~----~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQr 1185 (1283)
|++|+||+|++.+|+. |++||+.++. .+..+.++.. +.++.+++ ++. .......+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~---~~~~~p~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL-------EER---FANHKPNQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTC-------CGG---GTTCCGGGSCHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCH-------HHH---HHCCCHHHCCHHHH
T ss_conf 55577880412417686688877578887224789999999999998876242-------345---53488023899999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 99999999715998889726667999798999999999872--99649998049147761398999959889880596
Q 000789 1186 QRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSH 1261 (1283)
Q Consensus 1186 QRialARAll~~p~ILiLDEpTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~DrIivl~~G~Ive~Gt~ 1261 (1283)
||++|||||+.+|++|+||||||+||+.+...|++.|+++. .++|+|+|||+++.++.||||++|++|+|+++|++
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 999987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=372.09 Aligned_cols=225 Identities=26% Similarity=0.432 Sum_probs=191.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC--------
Q ss_conf 489998789889998864432215885099799998399998889999996027899656898893189999--------
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFK-------- 1110 (1283)
Q Consensus 1039 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-------- 1110 (1283)
.|+++|++++|++ ..+|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 6999978999899---9988150668869979999989998299999999747667899779999993367752000023
Q ss_pred -----HHHHHCCEEEECCCCCCCHH-HHHHHHHCCC--CCCCCH----HHHHHHHHHHCHHHHHH-HCCCCCCCCCCCCC
Q ss_conf -----27875032888157777712-1999972489--999999----99999999807289998-39987654237999
Q 000789 1111 -----LSWLRQQMGLVSQEPVLFNE-TIRTNIAYGK--QGGATE----EEIIAATEASNAHNFIS-ALPHGYETNVGERG 1177 (1283)
Q Consensus 1111 -----~~~lR~~i~~V~Qd~~Lf~g-TIreNl~~~~--~~~~sd----~ei~~al~~a~l~~~i~-~lp~Gldt~ige~G 1177 (1283)
...+|++|+||+|++.+|+. |++||+.++. ....+. +.+.++++.+++.+... ..|
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p----------- 147 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP----------- 147 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC-----------
T ss_conf 517679997454489983323141101021365657876299989999999999998299524430682-----------
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEE
Q ss_conf 9899469999999999715998889726667999798999999999872-99649998049147761-398999959889
Q 000789 1178 VQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVI 1255 (1283)
Q Consensus 1178 ~~LSGGQrQRialARAll~~p~ILiLDEpTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIivl~~G~I 1255 (1283)
.+|||||+||++|||||..+|++|||||||++||+.+...|++.|+++. +++|+|+|||+++.+.. ||||+||.+|+|
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~i 227 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf 20567788898999998439987885245556887888899876554103688338994899999986999999979999
Q ss_pred EEECCHHHHHHCCCCHHHH-HHH
Q ss_conf 8805967897106914499-999
Q 000789 1256 AEQGSHDALMKITDGAYAS-LVA 1277 (1283)
Q Consensus 1256 ve~Gt~~eLl~~~~g~y~~-L~~ 1277 (1283)
++.|+|+|+++++...|.+ ++.
T Consensus 228 v~~g~~~ev~~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 228 EEEGDPEQVFGNPQSPRLQQFLK 250 (258)
T ss_dssp EEEECHHHHHHSCCSHHHHHHHH
T ss_pred EEECCHHHHHHCCCCHHHHHHHH
T ss_conf 99849999983899999999881
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.8e-45 Score=363.18 Aligned_cols=220 Identities=22% Similarity=0.395 Sum_probs=184.8
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHC-C
Q ss_conf 489998789889998864432215885099799998399998889999996027899656898893189999278750-3
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ-Q 1117 (1283)
Q Consensus 1039 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~-~ 1117 (1283)
-|+++|++++|++ ..+|+||||+|++||.+||+||||||||||+++|+|+++|++|+|++||.|+...+.+..++ .
T Consensus 6 ~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 7999618999899---8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred EEEECCCCCCCHH-HHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 2888157777712-199997248999999999999999807289998399876542379999899469999999999715
Q 000789 1118 MGLVSQEPVLFNE-TIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLK 1196 (1283)
Q Consensus 1118 i~~V~Qd~~Lf~g-TIreNl~~~~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAll~ 1196 (1283)
++|+||++.+|+. |++||+.++.......+...+.++.+- +. + .+++........+||||||||++|||||+.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~--~~---~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF--SL---F-PRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHH--HH---C-HHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH--HH---H-HCHHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 35567655457763699999988873278889999999999--87---4-176888758543389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 998889726667999798999999999872-99649998049147761-398999959889880596789710
Q 000789 1197 NPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1197 ~p~ILiLDEpTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIivl~~G~Ive~Gt~~eLl~~ 1267 (1283)
+|++|+|||||++||+.+...+++.++++. +++|+|+++|+++.+.. ||||++|++|+|++.|+++|++++
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 9987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=8.4e-45 Score=359.63 Aligned_cols=219 Identities=23% Similarity=0.367 Sum_probs=182.6
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCC-
Q ss_conf 4899987898899988644322158850997999983999988899999960278996568988931899992787503-
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQ- 1117 (1283)
Q Consensus 1039 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~- 1117 (1283)
-|+++||+.+|++ ..+|+||||++++||.+||+||||||||||+++|+|+++|++|+|.++|.|+...+..+.++.
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 6999778999799---6887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEECCCCCCCH-HHHHHHHHCCCCC--------------CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 288815777771-2199997248999--------------9999999999998072899983998765423799998994
Q 000789 1118 MGLVSQEPVLFN-ETIRTNIAYGKQG--------------GATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSG 1182 (1283)
Q Consensus 1118 i~~V~Qd~~Lf~-gTIreNl~~~~~~--------------~~sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSG 1182 (1283)
|+++||++.+|. -|++||+.++... ...+++..+.+. +.++.+ |++........+|||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAF-----KILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHH-----HHHHHT--TCGGGTTSBGGGSCH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHH-----HHHHHC--CCCHHCCCCHHHCCC
T ss_conf 8725776424788742321430133303450456654213532899999999-----998761--963020595356991
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECC
Q ss_conf 69999999999715998889726667999798999999999872-99649998049147761-39899995988988059
Q 000789 1183 GQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260 (1283)
Q Consensus 1183 GQrQRialARAll~~p~ILiLDEpTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIivl~~G~Ive~Gt 1260 (1283)
|||||++||||++.+|++|||||||++||+.+...|++.++++. +++|+|+|+|+++.+.. ||||+||++|+|++.|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 88889999999975927232439765699999999999999999789989999476999998699999996998999966
Q ss_pred HHHHHHC
Q ss_conf 6789710
Q 000789 1261 HDALMKI 1267 (1283)
Q Consensus 1261 ~~eLl~~ 1267 (1283)
++|+.++
T Consensus 234 ~~e~~~~ 240 (254)
T d1g6ha_ 234 GEEEIKN 240 (254)
T ss_dssp SHHHHHH
T ss_pred HHHHHHC
T ss_conf 8998654
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.4e-43 Score=350.22 Aligned_cols=222 Identities=28% Similarity=0.458 Sum_probs=192.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 09999799998999998653121188808989999869998399999899729999986699999606998988874451
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i 453 (1283)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||++++.|+++|++|+|.++|.++...+.. ++++
T Consensus 6 ~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf 4999879999999---9998130678879989999999998299999999758999878799916413547700--0158
Q ss_pred EEECCCCCCCC-CCHHHHHHCCCCC--CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 88826887880-1089998439999--99999999999932999998488986530038999899578999989988701
Q 000789 454 GLVSQEPILFA-TSLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILK 530 (1283)
Q Consensus 454 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~ 530 (1283)
|||+|++.+|+ -|++||+.++... .+.++..+. +.+.++.+ |++.........||||||||++||||+..
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~ 153 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 153 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCHHHHCCCHHHCCHHHHHHHHHHHHHCC
T ss_conf 998003353422209999999998739999999999-----99999875--98556609954699999889999766404
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHCCCCCHHH
Q ss_conf 998889827877899998999999999870-8-9839998048213420-688999959889673394677309997038
Q 000789 531 NPKILLLDEATSALDAESERIVQDALVKIM-T-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYT 607 (1283)
Q Consensus 531 ~~~illLDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 607 (1283)
+|+||+|||||++||+.+...+++.++++. + ++|+|+|||+++.+.. ||+|++|++|+|+++|+++++..+|...|.
T Consensus 154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~ 233 (239)
T d1v43a3 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 233 (239)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHH
T ss_conf 99824306886668989998999999999873198079994899999986999999989999998599999868999899
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.6e-44 Score=354.01 Aligned_cols=219 Identities=24% Similarity=0.387 Sum_probs=187.3
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCC
Q ss_conf 54899987898899988644322158850997999983999988899999960278996568988931899992787503
Q 000789 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQ 1117 (1283)
Q Consensus 1038 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1117 (1283)
|.|+++|++.+|.+ ..+|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.++|.|+.+. ...+|+.
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTT
T ss_pred CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHH
T ss_conf 97899958999999---9998062568848979999999999999999999669887888799986724468-3988721
Q ss_pred EEEECCCCCCCHH-HHHHHHHCCC-CCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 2888157777712-1999972489-9999999999999980728999839987654237999989946999999999971
Q 000789 1118 MGLVSQEPVLFNE-TIRTNIAYGK-QGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVL 1195 (1283)
Q Consensus 1118 i~~V~Qd~~Lf~g-TIreNl~~~~-~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAll 1195 (1283)
++||||++.+|.. |++||+.+.. ....+.+++.+.++.+ ++.+ +++....+....||||||||++||||++
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHC--CCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 86750015468786677888989986179989999999999-----9867--9788885045337998989999999986
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 5998889726667999798999999999872-99649998049147761-398999959889880596789710
Q 000789 1196 KNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1196 ~~p~ILiLDEpTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrIivl~~G~Ive~Gt~~eLl~~ 1267 (1283)
.+|+||+|||||++||+.+...+++.++++. +++|+|++||+++.+.. ||||++|++|+|++.|+|+++.++
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 59998873379889798999999999999996599899995989999996999999989999999289999865
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.2e-44 Score=353.67 Aligned_cols=217 Identities=27% Similarity=0.457 Sum_probs=186.2
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCE
Q ss_conf 99997999989999986531211888089899998699983999998997299999866999996069989888744518
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~ 454 (1283)
|+++||+++|++ ..+|+|+||++++||+++|+||||||||||++++.|+++|++|+|.++|.++.+.+.. +++||
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEE
T ss_conf 999999999899---9998111778869989999989998299999999658788888899999977888644--43222
Q ss_pred EECCCCCCCCC-CHHHHHHCCCCCC--C----HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88268878801-0899984399999--9----999999999932999998488986530038999899578999989988
Q 000789 455 LVSQEPILFAT-SLRENIAYGKENA--T----DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARA 527 (1283)
Q Consensus 455 ~v~Q~~~l~~~-ti~~Ni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARa 527 (1283)
||+|+|.+|+. |++||+.++.... + ++++.++++..++.+ ........||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-----------~~~~~~~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-----------LLDRKPKALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHHCCHHHCCHHHHHHHHHHHH
T ss_conf 34334202643337889789998759988999999999997578865-----------6648965699999999999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHCCCCC
Q ss_conf 701998889827877899998999999999870--89839998048213420-688999959889673394677309997
Q 000789 528 ILKNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEG 604 (1283)
Q Consensus 528 l~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 604 (1283)
++.+|++++|||||++||+.+...+++.++++. .++|+|++||+++.+.. ||+|++|++|+|++.|++++++.+|..
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 224 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCC
T ss_conf 70399889975888788988998999999999874298799994899999996999999979999998089999738999
Q ss_pred HHH
Q ss_conf 038
Q 000789 605 PYT 607 (1283)
Q Consensus 605 ~~~ 607 (1283)
.|.
T Consensus 225 ~~v 227 (232)
T d2awna2 225 RFV 227 (232)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 799
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3.2e-43 Score=347.49 Aligned_cols=217 Identities=29% Similarity=0.475 Sum_probs=180.8
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEE
Q ss_conf 89998789889998864432215885099799998399998889999996027899656898893189999278750328
Q 000789 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119 (1283)
Q Consensus 1040 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1119 (1283)
+++ ++..+|.+ . .+ |+||++. +|.++|+||||||||||+++|.|+++|++|+|.+||.|+..++.. |++|+
T Consensus 3 l~v-~~~k~~g~---~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN---F-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT---E-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC---E-EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf 999-99999899---9-99-9999749-979999979998099999999739998962899999998869989--92852
Q ss_pred EECCCCCCCHH-HHHHHHHCCCCCCCCHHHH----HHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 88157777712-1999972489999999999----999998072899983998765423799998994699999999997
Q 000789 1120 LVSQEPVLFNE-TIRTNIAYGKQGGATEEEI----IAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAV 1194 (1283)
Q Consensus 1120 ~V~Qd~~Lf~g-TIreNl~~~~~~~~sd~ei----~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAl 1194 (1283)
||||++.+|+. ||+||+.++.. ..+..+. .++++.++ +..........||||||||++||||+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~-~~~~~~~~~~v~~~l~~~g-----------l~~~~~~~~~~LSGG~kQRvaiAral 141 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLR-NVERVERDRRVREMAEKLG-----------IAHLLDRKPARLSGGERQRVALARAL 141 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCT-TSCHHHHHHHHHHHHHTTT-----------CTTTTTCCGGGSCHHHHHHHHHHHHH
T ss_pred EECCCHHHCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCC-----------CHHHHHCCHHHCCHHHHHHHHHHHHH
T ss_conf 25231443522015576665323-3677889999999998638-----------37566579444899998999998777
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCCH
Q ss_conf 159988897266679997989999999998729--9649998049147761-3989999598898805967897106914
Q 000789 1195 LKNPKILLLDEATSALDAESERVVQDALERVMV--NRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITDGA 1271 (1283)
Q Consensus 1195 l~~p~ILiLDEpTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrIivl~~G~Ive~Gt~~eLl~~~~g~ 1271 (1283)
+.+|++|+||||||+||+.+...+++.++++.+ +.|+|+|||+++.+.. ||||++|++|+++++|+++|+++.++..
T Consensus 142 ~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~ 221 (240)
T d2onka1 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE 221 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSS
T ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHH
T ss_conf 51677067528655588799999999999998743976999818999999969999999899999990699983299889
Q ss_pred HHHHHH
Q ss_conf 499999
Q 000789 1272 YASLVA 1277 (1283)
Q Consensus 1272 y~~L~~ 1277 (1283)
.++++.
T Consensus 222 v~~fl~ 227 (240)
T d2onka1 222 VAEFLS 227 (240)
T ss_dssp HHHHGG
T ss_pred HHHHHC
T ss_conf 999857
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.6e-43 Score=348.21 Aligned_cols=215 Identities=31% Similarity=0.527 Sum_probs=186.6
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCE
Q ss_conf 99997999989999986531211888089899998699983999998997299999866999996069989888744518
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~ 454 (1283)
|+++|++++|++ .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++.. |++++
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf 899989999499----788433789879989999989998299999999647688878899956734652165--74056
Q ss_pred EECCCCCCCCC-CHHHHHHCCCC---CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 88268878801-08999843999---999999999999932999998488986530038999899578999989988701
Q 000789 455 LVSQEPILFAT-SLRENIAYGKE---NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILK 530 (1283)
Q Consensus 455 ~v~Q~~~l~~~-ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~ 530 (1283)
||+|++.+|+. |++||+.++.. ....+++.++++.. |+..........||||||||++||||++.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL-----------KIEHLLDRNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT-----------TCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH-----------CCHHHHHCCHHHCCHHHHCCHHHHHHHHC
T ss_conf 1512111174665778888877640553899999999982-----------56555758955479998401403043443
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHCCCCCHH
Q ss_conf 998889827877899998999999999870--89839998048213420-68899995988967339467730999703
Q 000789 531 NPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPY 606 (1283)
Q Consensus 531 ~~~illLDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 606 (1283)
+|++|||||||++||+.+...+++.++++. .+.|+|++||+++.+.. ||+|++|.+|++++.|++++++++|...+
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 6771443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=8.1e-44 Score=352.14 Aligned_cols=226 Identities=28% Similarity=0.435 Sum_probs=190.9
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC---HHHHH
Q ss_conf 099997999989999986531211888089899998699983999998997299999866999996069989---88874
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ---LKWIR 450 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~---~~~~~ 450 (1283)
.|+++|++++|+.. +..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred CCCEEECCCCCCCCC-CHHHHHHCCCCC--CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 451888268878801-089998439999--99999999999932999998488986530038999899578999989988
Q 000789 451 EKIGLVSQEPILFAT-SLRENIAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARA 527 (1283)
Q Consensus 451 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARa 527 (1283)
+++|||+|+|.+|+. |++||+.++... .+.++..+.+ .+.++.+ |++.........||||||||++||||
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v-----~~~l~~~--gL~~~~~~~p~~LSGGqkQRvaiARa 154 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV-----EEVAKIL--DIHHVLNHFPRELSGAQQQRVALARA 154 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHH-----HHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH-----HHHHHHC--CHHHHHHCCHHHCCHHHHHHHHHHHH
T ss_conf 4514773043346666577776655676137999999999-----9998665--91766648954599999858998757
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHH-CCCEEEEEECCEEEEECCHHHHHCCCCC
Q ss_conf 701998889827877899998999999999870--8983999804821342-0688999959889673394677309997
Q 000789 528 ILKNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIR-NADLIAVVHQGKIVEKGTHDELIKDPEG 604 (1283)
Q Consensus 528 l~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 604 (1283)
|..+|++++|||||++||+.+...+++.++++. .+.|+|+|||+++.+. .||+|++|++|+|++.|++++++.+|..
T Consensus 155 L~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~ 234 (242)
T d1oxxk2 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVS 234 (242)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSS
T ss_pred HHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
T ss_conf 76046614544786679989988998999999863598799997999999996999999989999998699999868999
Q ss_pred HHH
Q ss_conf 038
Q 000789 605 PYT 607 (1283)
Q Consensus 605 ~~~ 607 (1283)
.|.
T Consensus 235 ~~~ 237 (242)
T d1oxxk2 235 IQV 237 (242)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 799
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-43 Score=348.64 Aligned_cols=221 Identities=35% Similarity=0.570 Sum_probs=187.2
Q ss_pred EEEEEEEEECCCCCC-CCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH---HH
Q ss_conf 999979999899999-86531211888089899998699983999998997299999866999996069989888---74
Q 000789 375 IELRDVYFRYPARPE-VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW---IR 450 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~~ 450 (1283)
|+++|++++|+.... ..+|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|.++...+... +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCCEEECCCCCCCCC-CHHHHHHCCCC--CCCH----HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 451888268878801-08999843999--9999----9999999993299999848898653003899989957899998
Q 000789 451 EKIGLVSQEPILFAT-SLRENIAYGKE--NATD----QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIA 523 (1283)
Q Consensus 451 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqria 523 (1283)
++++||+|++.+|+. |++||+.++.. ..+. +++.+.++.+ |+..........||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~v-----------gL~~~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-----------GLGDKHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHH-----------STTTTTSSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-----------CCCHHHHCCHHHCCHHHHHHHH
T ss_conf 16643022522279964999999999984999899999999999976-----------9903554894349999998999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHC
Q ss_conf 9988701998889827877899998999999999870-8-9839998048213420-68899995988967339467730
Q 000789 524 IARAILKNPKILLLDEATSALDAESERIVQDALVKIM-T-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIK 600 (1283)
Q Consensus 524 lARal~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 600 (1283)
||||+..+|++|||||||++||+.+...+++.++++. + +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred CCCCHH
Q ss_conf 999703
Q 000789 601 DPEGPY 606 (1283)
Q Consensus 601 ~~~~~~ 606 (1283)
+|...|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCCHH
T ss_conf 899857
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.5e-43 Score=350.06 Aligned_cols=224 Identities=29% Similarity=0.481 Sum_probs=187.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH----H
Q ss_conf 099997999989999986531211888089899998699983999998997299999866999996069989888----7
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW----I 449 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~----~ 449 (1283)
.|+++|++++|++ ..+++|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+... .
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 1899869999899---9998560668869989999999998099999999648788989899999980356644424532
Q ss_pred HCCCEEECCCCCCCCC-CHHHHHHCCCC--CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 4451888268878801-08999843999--99999999999993299999848898653003899989957899998998
Q 000789 450 REKIGLVSQEPILFAT-SLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526 (1283)
Q Consensus 450 ~~~i~~v~Q~~~l~~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialAR 526 (1283)
|++++||+|+|.+|+. |+.||+.++.. ..+.++..+..+ +.++.+ |+..........||||||||++|||
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~-----~~l~~~--~l~~~~~~~p~~LSGGqkQRv~IAr 152 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR-----EVAELL--GLTELLNRKPRELSGGQRQRVALGR 152 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHH-----HHHHHH--TCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH-----HHHHHC--CCHHHHCCCHHHCCHHHHHHHHHHH
T ss_conf 255120022122231011667633068772999899999999-----999875--9966762993349999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHCCCC
Q ss_conf 8701998889827877899998999999999870-8-9839998048213420-68899995988967339467730999
Q 000789 527 AILKNPKILLLDEATSALDAESERIVQDALVKIM-T-SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPE 603 (1283)
Q Consensus 527 al~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 603 (1283)
||..+|++|+|||||++||+.+...+++.++++. + +.|+|++||+++.+.. ||+|++|++|+|++.|++++++.+|.
T Consensus 153 aL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~ 232 (240)
T d1g2912 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPA 232 (240)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 98269988982588765698999899999999986369889999599999999699999998999999859999982899
Q ss_pred CHHH
Q ss_conf 7038
Q 000789 604 GPYT 607 (1283)
Q Consensus 604 ~~~~ 607 (1283)
..|.
T Consensus 233 ~~~~ 236 (240)
T d1g2912 233 NTFV 236 (240)
T ss_dssp BHHH
T ss_pred CHHH
T ss_conf 9898
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.5e-43 Score=349.99 Aligned_cols=213 Identities=31% Similarity=0.480 Sum_probs=178.0
Q ss_pred EEEEEEEEECCCCC-CCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH----
Q ss_conf 99997999989999-9865312118880898999986999839999989972999998669999960699898887----
Q 000789 375 IELRDVYFRYPARP-EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWI---- 449 (1283)
Q Consensus 375 i~~~~v~f~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~---- 449 (1283)
|+++|++++|+... ...+|+|+||++++||+++|+||||||||||++++.|+++|++|+|.++|.++..++...+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCCEEECCCCCCCCC-CHHHHHHCCC-----CCCCHHHH-HHHHHHHCHHHHHHHCCCCCCCC-CCCCCCCCCHHHHHH
Q ss_conf 4451888268878801-0899984399-----99999999-99999932999998488986530-038999899578999
Q 000789 450 REKIGLVSQEPILFAT-SLRENIAYGK-----ENATDQEI-RTAIELANAAKFIDKLPKGLDTM-AGEHGTQLSGGQKQR 521 (1283)
Q Consensus 450 ~~~i~~v~Q~~~l~~~-ti~~Ni~~~~-----~~~~~~~~-~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGqkqr 521 (1283)
|++||||+|+|.+++. |+.||+.++. ...+.++. .++. +.++.+ |+... .......||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~------~~l~~~--~L~~~~~~~~p~~LSGGqkQR 153 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRAL------ECLKMA--ELEERFANHKPNQLSGGQQQR 153 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHH------HHHHHT--TCCGGGTTCCGGGSCHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH------HHHHHH--CHHHHHHCCCHHHCCHHHHHH
T ss_conf 555778804124176866888775788872247899999999999------988762--423455348802389999999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCH
Q ss_conf 989988701998889827877899998999999999870--89839998048213420688999959889673394
Q 000789 522 IAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTH 595 (1283)
Q Consensus 522 ialARal~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 595 (1283)
++||||+..+|++|+||||||+||+.+...+++.+.++. .++|+|+|||+++.++.||+|++|++|+|+++|+.
T Consensus 154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 9987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.8e-42 Score=339.20 Aligned_cols=225 Identities=32% Similarity=0.561 Sum_probs=186.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC--------
Q ss_conf 099997999989999986531211888089899998699983999998997299999866999996069989--------
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ-------- 445 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~-------- 445 (1283)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 6999978999899---9988150668869979999989998299999999747667899779999993367752000023
Q ss_pred -----HHHHHCCCEEECCCCCCCCC-CHHHHHHCCC---CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCC-CCCCCCCC
Q ss_conf -----88874451888268878801-0899984399---99999999999999329999984889865300-38999899
Q 000789 446 -----LKWIREKIGLVSQEPILFAT-SLRENIAYGK---ENATDQEIRTAIELANAAKFIDKLPKGLDTMA-GEHGTQLS 515 (1283)
Q Consensus 446 -----~~~~~~~i~~v~Q~~~l~~~-ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LS 515 (1283)
...+|++++||+|+|.+|+. |+.||+.++. ...+..+..+.. .+.++.+ |+.... ......||
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~p~~LS 151 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA-----LKYLAKV--GIDERAQGKYPVHLS 151 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHH-----HHHHHHT--TCCHHHHTSCGGGSC
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHC--CCCHHHHCCCCCCCC
T ss_conf 517679997454489983323141101021365657876299989999999-----9999982--995244306822056
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEEC
Q ss_conf 578999989988701998889827877899998999999999870-89839998048213420-6889999598896733
Q 000789 516 GGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKG 593 (1283)
Q Consensus 516 gGqkqrialARal~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 593 (1283)
|||+||++||||+..+|+++||||||++||+.+...+++.++++. +++|+|+|||+++.+.. ||||++|.+|+|++.|
T Consensus 152 GG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g 231 (258)
T d1b0ua_ 152 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 231 (258)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEEEC
T ss_conf 77888989999984399878852455568878888998765541036883389948999999869999999799999984
Q ss_pred CHHHHHCCCCCHHHH
Q ss_conf 946773099970388
Q 000789 594 THDELIKDPEGPYTQ 608 (1283)
Q Consensus 594 ~~~~l~~~~~~~~~~ 608 (1283)
++++++.++...|.+
T Consensus 232 ~~~ev~~~P~~~~~~ 246 (258)
T d1b0ua_ 232 DPEQVFGNPQSPRLQ 246 (258)
T ss_dssp CHHHHHHSCCSHHHH
T ss_pred CHHHHHHCCCCHHHH
T ss_conf 999998389999999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.9e-41 Score=332.33 Aligned_cols=217 Identities=25% Similarity=0.431 Sum_probs=184.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHC-C
Q ss_conf 099997999989999986531211888089899998699983999998997299999866999996069989888744-5
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE-K 452 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~-~ 452 (1283)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...++...++ .
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 6999778999799---6887121799889979999999998499999999779768873799999966405699999833
Q ss_pred CEEECCCCCCCCC-CHHHHHHCCCCCC---------------CHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 1888268878801-0899984399999---------------99999999999329999984889865300389998995
Q 000789 453 IGLVSQEPILFAT-SLRENIAYGKENA---------------TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSG 516 (1283)
Q Consensus 453 i~~v~Q~~~l~~~-ti~~Ni~~~~~~~---------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 516 (1283)
++|++|+|.+|.. |+.||+.++.... .+++..+ .+.+.++.+ |++.........|||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE-----KAFKILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHH-----HHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHH-----HHHHHHHHC--CCCHHCCCCHHHCCC
T ss_conf 8725776424788742321430133303450456654213532899999-----999998761--963020595356991
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHH-CCCEEEEEECCEEEEECC
Q ss_conf 78999989988701998889827877899998999999999870-8983999804821342-068899995988967339
Q 000789 517 GQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIR-NADLIAVVHQGKIVEKGT 594 (1283)
Q Consensus 517 GqkqrialARal~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 594 (1283)
|||||++||||+..+|++|||||||++||+.+...+++.++++. +|+|++++||+++.+. .||+|++|++|+|+++|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 88889999999975927232439765699999999999999999789989999476999998699999996998999966
Q ss_pred HHHHHC
Q ss_conf 467730
Q 000789 595 HDELIK 600 (1283)
Q Consensus 595 ~~~l~~ 600 (1283)
++|+.+
T Consensus 234 ~~e~~~ 239 (254)
T d1g6ha_ 234 GEEEIK 239 (254)
T ss_dssp SHHHHH
T ss_pred HHHHHH
T ss_conf 899865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.8e-41 Score=332.39 Aligned_cols=221 Identities=27% Similarity=0.446 Sum_probs=183.9
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHH-
Q ss_conf 5609999799998999998653121188808989999869998399999899729999986699999606998988874-
Q 000789 372 EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIR- 450 (1283)
Q Consensus 372 ~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~- 450 (1283)
+..++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....+
T Consensus 4 d~~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r 80 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp SEEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHH
T ss_conf 607999618999899---88883025788899799999999985999999996788888038984244344660888887
Q ss_pred CCCEEECCCCCCCCC-CHHHHHHCCCCCC-CHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 451888268878801-0899984399999-99999999999329999984889865300389998995789999899887
Q 000789 451 EKIGLVSQEPILFAT-SLRENIAYGKENA-TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAI 528 (1283)
Q Consensus 451 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal 528 (1283)
..++|++|++.+|+. |++||+.++.... ..+...+..+.. ...+ .++..........||||||||++||||+
T Consensus 81 ~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL 154 (240)
T d1ji0a_ 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLF-PRLKERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHC-HHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH-HCHHHHHHCCHHHCCHHHHHHHHHHHHH
T ss_conf 423556765545776369999998887327888999999999-----9874-1768887585433899999999999999
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHCC
Q ss_conf 01998889827877899998999999999870-89839998048213420-688999959889673394677309
Q 000789 529 LKNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 529 ~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 601 (1283)
..+|++|+|||||++||+.+...+++.++++. +|+|++++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 155 ~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 829987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.2e-40 Score=325.45 Aligned_cols=218 Identities=27% Similarity=0.438 Sum_probs=187.5
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCC
Q ss_conf 60999979999899999865312118880898999986999839999989972999998669999960699898887445
Q 000789 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREK 452 (1283)
Q Consensus 373 ~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~ 452 (1283)
|.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. ....|+.
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTT
T ss_pred CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHH
T ss_conf 97899958999999---9998062568848979999999999999999999669887888799986724468-3988721
Q ss_pred CEEECCCCCCCCC-CHHHHHHCCCC--CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 1888268878801-08999843999--99999999999993299999848898653003899989957899998998870
Q 000789 453 IGLVSQEPILFAT-SLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAIL 529 (1283)
Q Consensus 453 i~~v~Q~~~l~~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~ 529 (1283)
++|+||++.+|.. |+.||+.+... .....++.+..+. .++.+ |++.........||||||||++||||++
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-----~l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER-----ATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHH-----HHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH-----HHHHC--CCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 8675001546878667788898998617998999999999-----99867--9788885045337998989999999986
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHCC
Q ss_conf 1998889827877899998999999999870-89839998048213420-688999959889673394677309
Q 000789 530 KNPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 530 ~~~~illLDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 601 (1283)
.+|++++|||||++||+.+...+++.++++. .|+|+|++||+++.+.. ||+|++|++|+|++.|+++++..+
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 59998873379889798999999999999996599899995989999996999999989999999289999865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.8e-40 Score=322.86 Aligned_cols=220 Identities=32% Similarity=0.529 Sum_probs=184.1
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCE
Q ss_conf 99997999989999986531211888089899998699983999998997299999866999996069989888744518
Q 000789 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 375 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~ 454 (1283)
+++ ++...|+. . .+ |+||++. +++++|+||||||||||+++|.|+++|++|+|.++|.++..+++. |++||
T Consensus 3 l~v-~~~k~~g~---~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN---F-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT---E-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC---E-EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf 999-99999899---9-99-9999749-979999979998099999999739998962899999998869989--92852
Q ss_pred EECCCCCCCCC-CHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 88268878801-08999843999999999999999932999998488986530038999899578999989988701998
Q 000789 455 LVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPK 533 (1283)
Q Consensus 455 ~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~~~~ 533 (1283)
||+|++.+|+. ||+||+.++.......+..+. +.+.++.+ |+..........||||||||++||||++.+|+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 252314435220155766653233677889999-----99999863--83756657944489999899999877751677
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHCCCCCHHHHHH
Q ss_conf 8898278778999989999999998708--9839998048213420-688999959889673394677309997038899
Q 000789 534 ILLLDEATSALDAESERIVQDALVKIMT--SRTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610 (1283)
Q Consensus 534 illLDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 610 (1283)
+++|||||++||+.+...+++.++++.+ +.|+|++||+++.+.. ||+|++|++|++++.|+++++++.++...++++
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl 226 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHHHHH
T ss_conf 06752865558879999999999999874397699981899999996999999989999999069998329988999985
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-40 Score=326.37 Aligned_cols=210 Identities=22% Similarity=0.333 Sum_probs=182.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCE
Q ss_conf 48999878988999886443221588509979999839999888999999602789965689889318999927875032
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
-++++||+.+| +|+||||+|++||.+||+||||||||||+++|.|++ |.+|+|.++|.|+..++...++...
T Consensus 3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 99998741571-------555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEECCCCC-CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 88815777-7712199997248999999999999999807289998399876542379999899469999999999715-
Q 000789 1119 GLVSQEPV-LFNETIRTNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLK- 1196 (1283)
Q Consensus 1119 ~~V~Qd~~-Lf~gTIreNl~~~~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAll~- 1196 (1283)
++++|+.. .|..++.+|+.++.......+.+.++++..++. ..++....+||||||||++||||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-----------DKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCT-----------TTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCH-----------HHHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 245121357744209887641001466899999999865987-----------676768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf ------99888972666799979899999999987-299649998049147761-398999959889880596789710
Q 000789 1197 ------NPKILLLDEATSALDAESERVVQDALERV-MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKI 1267 (1283)
Q Consensus 1197 ------~p~ILiLDEpTSaLD~~te~~I~~~l~~~-~~~~TvI~IaHrl~ti~~-~DrIivl~~G~Ive~Gt~~eLl~~ 1267 (1283)
+|+|+||||||++||+.+...+.+.++++ .+++|+|+++|+++.+.. ||||++|++|++++.|+++|++..
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 7133899889997187777898999999999999986799999996779999997999999979989998899998188
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-36 Score=295.74 Aligned_cols=209 Identities=24% Similarity=0.364 Sum_probs=179.6
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 09999799998999998653121188808989999869998399999899729999986699999606998988874451
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i 453 (1283)
.++++||+++| .|+++||++++||+++|+||||||||||+++|.|+. |.+|+|.++|.++...+...++...
T Consensus 3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 99998741571-------555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEECCCCC-CCCCCHHHHHHCCCCCCC-HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-
Q ss_conf 88826887-880108999843999999-999999999932999998488986530038999899578999989988701-
Q 000789 454 GLVSQEPI-LFATSLRENIAYGKENAT-DQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILK- 530 (1283)
Q Consensus 454 ~~v~Q~~~-l~~~ti~~Ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~- 530 (1283)
+|++|+.. .|..++.+++.++..... .+.+.++++.. |++..++.....||||||||++||||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHT-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHC-----------CCHHHHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 245121357744209887641001466899999999865-----------987676768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHH-CCCEEEEEECCEEEEECCHHHHHCC
Q ss_conf ------998889827877899998999999999870-8983999804821342-0688999959889673394677309
Q 000789 531 ------NPKILLLDEATSALDAESERIVQDALVKIM-TSRTTVVVAHRLTTIR-NADLIAVVHQGKIVEKGTHDELIKD 601 (1283)
Q Consensus 531 ------~~~illLDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 601 (1283)
+|++++|||||++||+.+...+.+.++++. .|+|+|++||+++.+. .||++++|++|++++.|++++++.+
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 7133899889997187777898999999999999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6.6e-37 Score=298.47 Aligned_cols=192 Identities=20% Similarity=0.404 Sum_probs=159.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCE
Q ss_conf 48999878988999886443221588509979999839999888999999602789965689889318999927875032
Q 000789 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1039 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1118 (1283)
.|+++|++++|+ .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+ +|.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCE
T ss_conf 599998999939----928842088985998999999999719999999966205677889999896267-----36708
Q ss_pred EEECCCCCCCHH-HHHHHHHCC---CCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 888157777712-199997248---9999999999999998072899983998765423799998994699999999997
Q 000789 1119 GLVSQEPVLFNE-TIRTNIAYG---KQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAV 1194 (1283)
Q Consensus 1119 ~~V~Qd~~Lf~g-TIreNl~~~---~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAl 1194 (1283)
+|+||++.++.. |+.+|+.+. .....+++++.++++..++.+ ++..+ .+||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~----~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKL----GELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBG----GGSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--------CCCCC----CCCCCCHHHHHHHHHHH
T ss_conf 9995013578882899999999975488637999999998748856--------30126----86897188889999988
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEEC
Q ss_conf 1599888972666799979899999999987299649998049147761398999959
Q 000789 1195 LKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKN 1252 (1283)
Q Consensus 1195 l~~p~ILiLDEpTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIivl~~ 1252 (1283)
+.+|+++||||||++||+++...+++.+.+..+++++++|+|+. .+..||++.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 64998999868620169999999999999998679999999916-2544161234010
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.5e-33 Score=269.62 Aligned_cols=190 Identities=24% Similarity=0.459 Sum_probs=152.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 09999799998999998653121188808989999869998399999899729999986699999606998988874451
Q 000789 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453 (1283)
Q Consensus 374 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i 453 (1283)
.|+++|++|+|+ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCE
T ss_conf 599998999939----928842088985998999999999719999999966205677889999896267-----36708
Q ss_pred EEECCCCCCCCC-CHHHHHHCC----CCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 888268878801-089998439----999999999999999329999984889865300389998995789999899887
Q 000789 454 GLVSQEPILFAT-SLRENIAYG----KENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAI 528 (1283)
Q Consensus 454 ~~v~Q~~~l~~~-ti~~Ni~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal 528 (1283)
+|++|++.++.. |+.+|+.+. ....+++++.++++...+ + +++. ....||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~------~--~~~~----~~~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV------L--DLKK----KLGELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC------C--CTTS----BGGGSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC------C--CCCC----CCCCCCCCHHHHHHHHHHH
T ss_conf 99950135788828999999999754886379999999987488------5--6301----2686897188889999988
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEE
Q ss_conf 019988898278778999989999999998708983999804821342068899995
Q 000789 529 LKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVH 585 (1283)
Q Consensus 529 ~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 585 (1283)
+.+|+++||||||++||+.+++.+++.+.++.+.+++++++|+. .+..||.+.+|.
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~ 196 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLH 196 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEE
T ss_conf 64998999868620169999999999999998679999999916-254416123401
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.9e-27 Score=223.65 Aligned_cols=318 Identities=16% Similarity=0.237 Sum_probs=282.1
Q ss_pred CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41499998843225589999999999998978999999999999862389841328899999999999999999999999
Q 000789 35 KVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKVAVKFLYLAAGTGIAAFLQ 114 (1283)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1283)
+..++++++|.+++++ .+++++++..+.++..+..|++++.++|........ .......+.++++.++..++.+++
T Consensus 1 Wk~~krl~~~~~~~k~-~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~l~~~~~~~~~~~~~~~i~~~~~ 76 (319)
T d3b60a2 1 WQTFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR---SVLLWMPLVVIGLMILRGITSYIS 76 (319)
T ss_dssp CHHHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTH---HHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9689999999999999-999999999999999999999999999987446877---899999999999999764533546
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999809943470268820799999968999999998999999999999999999998885
Q 000789 115 VSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARG 194 (1283)
Q Consensus 115 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 194 (1283)
.++..+.+.+...++|..++++++++|+.++++. ++|++++++++|++.+.+.+...+...+..+..+++.+++++.++
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 155 (319)
T d3b60a2 77 SYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS 155 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 6544343100011000477776501011110233-322111112121210000111112001123344566888887652
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999998139999984608999999999999999999999
Q 000789 195 WFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQ 274 (1283)
Q Consensus 195 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 274 (1283)
|.+++++++..|+..++.....++..+..++.++..++.++.+.|.++|++++|.|++|+.+.+++++..++..+...+.
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 235 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKM 235 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 00210256689999998876666877878988764456778877762487235311101024566666531356778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999999999999871474688899999999999999998899999999999999999998713
Q 000789 275 GMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKR 354 (1283)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~ 354 (1283)
....+.......+...+..++++++|.+++.+|.+++|.+++++.+......|+.++...+..++++.++.+|+++++|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~ 315 (319)
T d3b60a2 236 VSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 315 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87777406401000000237999999999980997899999999999999999999999999999999999999999669
Q ss_pred CCC
Q ss_conf 998
Q 000789 355 KPK 357 (1283)
Q Consensus 355 ~~~ 357 (1283)
|+|
T Consensus 316 ~~E 318 (319)
T d3b60a2 316 EQE 318 (319)
T ss_dssp CCS
T ss_pred CCC
T ss_conf 989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.98 E-value=2.7e-27 Score=223.91 Aligned_cols=318 Identities=14% Similarity=0.104 Sum_probs=274.4
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999988432255899999999999989789999999999998623898413----2889999999999999999999999
Q 000789 38 FYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSH----VVHEVSKVAVKFLYLAAGTGIAAFL 113 (1283)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~id~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (1283)
++++++|.+++++ .++..+++.++.+......|++++.++|.+....... .........+.++++.++..++.+.
T Consensus 2 lKrl~~~~k~~k~-~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 2 IKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999-999999999999999999999999999998626774215568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999980994347026882079999996899999999899999999999999999999888
Q 000789 114 QVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALAR 193 (1283)
Q Consensus 114 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 193 (1283)
+.++..+.+.+...++|..++++++++|+.+|++. ++|++++++++|++.+.+.+...+...+..+..+++.+++++++
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999985567788887665402332100012-22110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59999999999999999999999999999999999999999999999813999998460899999999999999999999
Q 000789 194 GWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQ 273 (1283)
Q Consensus 194 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 273 (1283)
+|.++++.++..|+..++...+.++..+..++.++..++.++.+.|.++|+++||+|++|+.+.+++++..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999999987147468889999999999999999889999999999999999999871
Q 000789 274 QGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIK 353 (1283)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~ 353 (1283)
..............+..+..++++++|.+++.+|.+++|.+++++.+......|+.++...+..++++.++.+|+++++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCCC
Q ss_conf 3998
Q 000789 354 RKPK 357 (1283)
Q Consensus 354 ~~~~ 357 (1283)
++||
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
T ss_conf 9998
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=3.6e-24 Score=199.66 Aligned_cols=317 Identities=19% Similarity=0.251 Sum_probs=282.8
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999885069157999999999999999999999999999974397223332069999999999999999999999999
Q 000789 703 SMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFF 782 (1283)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 782 (1283)
.+++++++.+|+++.++++.++..+.+++.+..++.+...++......+ ......+...++++.++..++.++..+..
T Consensus 3 ~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (319)
T d3b60a2 3 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--RSVLLWMPLVVIGLMILRGITSYISSYCI 80 (319)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--HHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999999999999999999999999998744687--78999999999999997645335466544
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999997089533235777824799999630999999999989999999999999999999985999
Q 000789 783 GVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWIL 862 (1283)
Q Consensus 783 ~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~g~i~~r~~~d~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 862 (1283)
.+.+.+...++|+++++++++.|++||++ +++|++.+++++|++.+...+.......+..+..++..+++++..+|.+
T Consensus 81 ~~~~~~~~~~l~~~~~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 158 (319)
T d3b60a2 81 SWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 158 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHCCCCCHHHHHHHHHCCCCHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 34310001100047777650101111023--3322111112121210000111112001123344566888887652002
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 99999999999999999999973899999999999999999988225999970647999999999972078867999999
Q 000789 863 AFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGIL 942 (1283)
Q Consensus 863 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1283)
++++++..|+.........++..+..++..+...+..+.+.|.+.|++++|+++.|+.+.+++.+..++..+...+....
T Consensus 159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 238 (319)
T d3b60a2 159 SIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 238 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10256689999998876666877878988764456778877762487235311101024566666531356778888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 97999999999999999999999999850876888999999999999999999999798999999999999997526998
Q 000789 943 SGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPK 1022 (1283)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 1022 (1283)
.....+...+......++++++|.+++..|.+++|.++++..+......|+..+......++++..+.+|+.++++.+||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 239 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 77406401000000237999999999980997899999999999999999999999999999999999999999669989
Q ss_pred C
Q ss_conf 8
Q 000789 1023 I 1023 (1283)
Q Consensus 1023 ~ 1023 (1283)
+
T Consensus 319 ~ 319 (319)
T d3b60a2 319 K 319 (319)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.96 E-value=3.7e-24 Score=199.57 Aligned_cols=317 Identities=16% Similarity=0.184 Sum_probs=275.3
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998850691579999999999999999999999999999743972233320-----6999999999999999999999
Q 000789 704 MRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKD-----SRFWALIYLVLGIINLIAVPFQ 778 (1283)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~ 778 (1283)
+|++.++.+|+++.++...++..+.+.+....++.+...++......+..... .......++++.++..++.++.
T Consensus 2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (323)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999999999999986267742155689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999708953323577782479999963099999999998999999999999999999998
Q 000789 779 NYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTA 858 (1283)
Q Consensus 779 ~~~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~g~i~~r~~~d~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 858 (1283)
.++..+.+.+...++|.+++++++++|++||++ +++|++++|+++|++.+.+.+...+...+..+..+++.+++++..
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT--SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 999999998556778888766540233210001--222110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 59999999999999999999999997389999999999999999998822599997064799999999997207886799
Q 000789 859 NWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVR 938 (1283)
Q Consensus 859 ~~~l~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tI~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1283)
+|.++++.++..|+..+......+..++..++..+..++..+.+.|.++|+++||.++.|+.+.++|.+..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999799999999999999999999999985087688899999999999999999999979899999999999999752
Q 000789 939 RGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILD 1018 (1283)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~~~ 1018 (1283)
..............+..+...+++++|.+++..|.+++|.++++..+......|+..+...+.+++++..+.+|+.++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCCC
Q ss_conf 6998
Q 000789 1019 SKPK 1022 (1283)
Q Consensus 1019 ~~~~ 1022 (1283)
++||
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
T ss_conf 9998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.54 E-value=1.5e-16 Score=140.52 Aligned_cols=170 Identities=14% Similarity=0.123 Sum_probs=115.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 99998399998889999996027899656898893189999278750328881577777121999972489999999999
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEI 1149 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~~~~~~~sd~ei 1149 (1283)
|++|+||+|||||||++.+++.+++..|.+..++.+....+...........++...++..+..++...+.. ....+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 79 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY-GVNVQY- 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE-EECHHH-
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCH-
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023-037625-
Q ss_pred HHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--C
Q ss_conf 99999807289998399876542379999899469999999999715998889726667999798999999999872--9
Q 000789 1150 IAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--V 1227 (1283)
Q Consensus 1150 ~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAll~~p~ILiLDEpTSaLD~~te~~I~~~l~~~~--~ 1227 (1283)
..+|+|++++.++++++.++|+++++|||+...+. .....+.+.+.. .
T Consensus 80 ----------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~ 129 (178)
T d1ye8a1 80 ----------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDP 129 (178)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCT
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHHHHHHHHHCCC
T ss_conf ----------------------------66532013789999997409974230277731004--579999999875057
Q ss_pred CCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 9649998049147761398999959889880596789710691449999
Q 000789 1228 NRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLV 1276 (1283)
Q Consensus 1228 ~~TvI~IaHrl~ti~~~DrIivl~~G~Ive~Gt~~eLl~~~~g~y~~L~ 1276 (1283)
++|+|+++|+.+....||++..+++|++++.+.. + .+..+.+.+
T Consensus 130 ~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~----n-rd~~~~~i~ 173 (178)
T d1ye8a1 130 NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE----N-RDVILEDIL 173 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTT----T-TTTHHHHHH
T ss_pred CCEEEEEECCHHHHHHHCEEEEEECCEEEEECCC----C-HHHHHHHHH
T ss_conf 9789999744778986365998719999998996----4-788999999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.39 E-value=5.8e-15 Score=128.13 Aligned_cols=159 Identities=13% Similarity=0.052 Sum_probs=104.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHHCCCCCCCHHHHH
Q ss_conf 99998699983999998997299999866999996069989888744518882688788010899984399999999999
Q 000789 405 TAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIR 484 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~ 484 (1283)
+++|+||+|||||||++.++|.+++..|.+.+++.+....+............+.+.++..+...+...++.....+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQ--- 78 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHH---
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302303762---
Q ss_pred HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CC
Q ss_conf 9999932999998488986530038999899578999989988701998889827877899998999999999870--89
Q 000789 485 TAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM--TS 562 (1283)
Q Consensus 485 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~--~~ 562 (1283)
...+++|++++.+++++..++|+++++|||....+. .....+.+.+.. .+
T Consensus 79 --------------------------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 79 --------------------------YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPN 130 (178)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTT
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHHHHHHHHHCCCC
T ss_conf --------------------------566532013789999997409974230277731004--5799999998750579
Q ss_pred CEEEEEECCCHHHHCCCEEEEEECCEEEEECC
Q ss_conf 83999804821342068899995988967339
Q 000789 563 RTTVVVAHRLTTIRNADLIAVVHQGKIVEKGT 594 (1283)
Q Consensus 563 ~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 594 (1283)
+++++++|+.+....+|++..+++|++++-+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.35 E-value=1.4e-11 Score=101.86 Aligned_cols=72 Identities=25% Similarity=0.342 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHHCCEEEEE
Q ss_conf 8994699999999997----15998889726667999798999999999872-996499980491477613989999
Q 000789 1179 QLSGGQKQRIAIARAV----LKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAHRLTTIKNADIIAVV 1250 (1283)
Q Consensus 1179 ~LSGGQrQRialARAl----l~~p~ILiLDEpTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~DrIivl 1250 (1283)
.+|||||.++++|-.+ ..++|+++||||+++||+.....+.+.|.+.. .+.-+|+|||++..+..+|+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.27 E-value=1.6e-10 Score=93.71 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHCCCEEEEE
Q ss_conf 98995789999899887----019988898278778999989999999998708-98399980482134206889999
Q 000789 512 TQLSGGQKQRIAIARAI----LKNPKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAHRLTTIRNADLIAVV 584 (1283)
Q Consensus 512 ~~LSgGqkqrialARal----~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~i~~l 584 (1283)
..||||||.++++|-.+ +.++++++||||+++||+.....+.+.|.++.. +.-+|++||++..+..+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.19 E-value=4.9e-10 Score=89.94 Aligned_cols=75 Identities=27% Similarity=0.395 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEE--EEC
Q ss_conf 8994699999999997----1599888972666799979899999999987299649998049147761398999--959
Q 000789 1179 QLSGGQKQRIAIARAV----LKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAV--VKN 1252 (1283)
Q Consensus 1179 ~LSGGQrQRialARAl----l~~p~ILiLDEpTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrIiv--l~~ 1252 (1283)
.+|+|||+.+.++..+ ..+++++++|||-++|++.....+.+.|++..++.-+|++||++..+..+|+++. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 8
Q 000789 1253 G 1253 (1283)
Q Consensus 1253 G 1253 (1283)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.10 E-value=3e-09 Score=83.84 Aligned_cols=76 Identities=26% Similarity=0.376 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEE--EE
Q ss_conf 98995789999899887----0199888982787789999899999999987089839998048213420688999--95
Q 000789 512 TQLSGGQKQRIAIARAI----LKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAV--VH 585 (1283)
Q Consensus 512 ~~LSgGqkqrialARal----~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~--l~ 585 (1283)
..+|+|||+...++..+ ..++.+++.|||-++|++.....+.+.+....++.-+|++||++..+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999999855488799998988999732428999996
Q ss_pred CC
Q ss_conf 98
Q 000789 586 QG 587 (1283)
Q Consensus 586 ~G 587 (1283)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
T ss_conf 99
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.17 E-value=0.00056 Score=42.89 Aligned_cols=28 Identities=32% Similarity=0.573 Sum_probs=13.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9899998699983999998997299999
Q 000789 403 GTTAALVGQSGSGKSTVISLVERFYDPD 430 (1283)
Q Consensus 403 g~~~~ivG~sGsGKSTl~~~l~g~~~~~ 430 (1283)
+..+.|+|++||||||+++.|+++.++.
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7888999403566257899986530145
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.17 E-value=0.0054 Score=35.28 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=26.7
Q ss_pred CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5312118880898999986999839999989972
Q 000789 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 392 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g 425 (1283)
-|+++.-=+.+|+.+.|.|++|+||||++.-++-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 6888746978980899994799979999999997
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.88 E-value=0.012 Score=32.61 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=33.3
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHH-HHC-CCCEEEEEECCCHHHHC
Q ss_conf 1998889827877899998999999999-870-89839998048213420
Q 000789 530 KNPKILLLDEATSALDAESERIVQDALV-KIM-TSRTTVVVAHRLTTIRN 577 (1283)
Q Consensus 530 ~~~~illLDE~ts~lD~~~~~~i~~~l~-~~~-~~~t~i~itH~~~~~~~ 577 (1283)
.+..++|+||...+-|+.....+..++. .+. .+..++++||..+....
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l 162 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL 162 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHHH
T ss_conf 97727855454568623320025888888886237613786520233322
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.81 E-value=0.012 Score=32.44 Aligned_cols=177 Identities=13% Similarity=0.104 Sum_probs=80.3
Q ss_pred CCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCCCCCCCCHHHHHCC-EEEECCCCCCCHHHHH
Q ss_conf 44322158850997999983999988899999960-278996568988931899992787503-2888157777712199
Q 000789 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIER-FYDPDSGHVLLDNIELPKFKLSWLRQQ-MGLVSQEPVLFNETIR 1133 (1283)
Q Consensus 1056 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~r-l~~p~~G~I~idG~di~~~~~~~lR~~-i~~V~Qd~~Lf~gTIr 1133 (1283)
+-|+.+..-+.||+.+.|.|++|+||||++.-+.. +..-..-.+.+-. -+.+.+.+..+ ++...+-+.--..+.+
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s---~E~~~~~~~~r~~~~~~~~~~~~~~~~~ 99 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM---LEESVEETAEDLIGLHNRVRLRQSDSLK 99 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE---SSSCHHHHHHHHHHHHTTCCGGGCHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE---ECCCHHHHHHHHHHHHHCCCCHHHCCCC
T ss_conf 6688874697898089999479997999999999726553366345764---0111135776999986458710101222
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH-
Q ss_conf 9972489999999999999998072899983998765423799998994699999999997159988897266679997-
Q 000789 1134 TNIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA- 1212 (1283)
Q Consensus 1134 eNl~~~~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAll~~p~ILiLDEpTSaLD~- 1212 (1283)
...++...+.++...+...-.-.+-+........+.-...-.-.--.+|+++++|=-+ .+++
T Consensus 100 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l~-~l~~~ 162 (277)
T d1cr2a_ 100 ----------------REIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHIS-IVVSA 162 (277)
T ss_dssp ----------------HHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEEE-C----
T ss_pred ----------------CCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC-CCCCC
T ss_conf ----------------2214567788898874035214662143310689999986543213676259970542-12034
Q ss_pred -------HHHHHHHHHHHHHC--CCCEEEEEECCC----------------HHH-------HHCCEEEEEEC
Q ss_conf -------98999999999872--996499980491----------------477-------61398999959
Q 000789 1213 -------ESERVVQDALERVM--VNRTTVVVAHRL----------------TTI-------KNADIIAVVKN 1252 (1283)
Q Consensus 1213 -------~te~~I~~~l~~~~--~~~TvI~IaHrl----------------~ti-------~~~DrIivl~~ 1252 (1283)
+.-..+.+.++++. .++++++++|=- +.+ ..||.++.+..
T Consensus 163 ~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r 234 (277)
T d1cr2a_ 163 SGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (277)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEE
T ss_conf 654430677899999999976501655203103563224445543333211212343001503869999984
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.0091 Score=33.51 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 8089899998699983999998997
Q 000789 400 VPSGTTAALVGQSGSGKSTVISLVE 424 (1283)
Q Consensus 400 i~~g~~~~ivG~sGsGKSTl~~~l~ 424 (1283)
+.||+.+.|.|++|+|||||+.-++
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 5589589999289998999999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.50 E-value=0.0007 Score=42.13 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=18.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98999986999839999989972999
Q 000789 403 GTTAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 403 g~~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
|..+.|+|||||||||+.+.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.021 Score=30.71 Aligned_cols=144 Identities=16% Similarity=0.168 Sum_probs=71.6
Q ss_pred CCEEEEEEEEECC--CCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHH--------CCCCCCC-CEEEECCCCC
Q ss_conf 6099997999989--999986531211888089899998699983999998997--------2999998-6699999606
Q 000789 373 GEIELRDVYFRYP--ARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVE--------RFYDPDA-GEVLIDGIDI 441 (1283)
Q Consensus 373 ~~i~~~~v~f~y~--~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~--------g~~~~~~-G~i~i~g~~~ 441 (1283)
+.+++++....-= ..++..+-+++++. +.+....|.|||.|||||+++.+. |.+-|.+ .++.+
T Consensus 10 ~~l~i~~~rHPlle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~----- 83 (234)
T d1wb9a2 10 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGP----- 83 (234)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECC-----
T ss_pred CCEEEEEEECCEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEECCC-----
T ss_conf 96899973787797446998264057988-995399995467313689999879999998729767417666134-----
Q ss_pred CCCCHHHHHCCCEEECCCCCCC-CCCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9989888744518882688788-010899984399999999999999993299999848898653003899989957899
Q 000789 442 KKLQLKWIREKIGLVSQEPILF-ATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQ 520 (1283)
Q Consensus 442 ~~~~~~~~~~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 520 (1283)
-+ .+| .-...|++.-+.... ..|+.+... .++
T Consensus 84 ----------------~d-~I~~~~~~~d~~~~~~S~F-~~E~~~~~~------il~----------------------- 116 (234)
T d1wb9a2 84 ----------------ID-RIFTRVGAADDLASGRSTF-MVEMTETAN------ILH----------------------- 116 (234)
T ss_dssp ----------------CC-EEEEEEC-----------C-HHHHHHHHH------HHH-----------------------
T ss_pred ----------------CH-HHEEEECCCCCCCCCHHHH-HHHHHHHHH------HHH-----------------------
T ss_conf ----------------42-0234874675343653189-999999999------997-----------------------
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC-C-CCEEEEEECCCHHHH
Q ss_conf 99899887019988898278778999989999999-99870-8-983999804821342
Q 000789 521 RIAIARAILKNPKILLLDEATSALDAESERIVQDA-LVKIM-T-SRTTVVVAHRLTTIR 576 (1283)
Q Consensus 521 rialARal~~~~~illLDE~ts~lD~~~~~~i~~~-l~~~~-~-~~t~i~itH~~~~~~ 576 (1283)
-..+..++|+||+..+-++.....+..+ +..+. + +..+++.||......
T Consensus 117 -------~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 117 -------NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 168 (234)
T ss_dssp -------HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred -------HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf -------4546608853222358774566678987645432045442898524687764
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.38 E-value=0.024 Score=30.19 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=34.2
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHH
Q ss_conf 5998889726667999798999999999872--9964999804914776
Q 000789 1196 KNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAHRLTTIK 1242 (1283)
Q Consensus 1196 ~~p~ILiLDEpTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~ 1242 (1283)
.+..++++||.-++-|++....+..++-+.. .+++++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.35 E-value=0.0016 Score=39.30 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=14.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 97999983999988899999960278996568
Q 000789 1068 GKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099 (1283)
Q Consensus 1068 Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1099 (1283)
|++.+++|+||.|||||++.|.+-.....|.|
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v 126 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 126 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred CCEEEEECCCCCCHHHHHHHHCCHHHHHCCCC
T ss_conf 98089978898778888773053555010684
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=3.7e-05 Score=52.05 Aligned_cols=162 Identities=12% Similarity=-0.019 Sum_probs=66.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCC-----CCCC
Q ss_conf 99998399998889999996027899656898893189999278750328881577777121999972489-----9999
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGK-----QGGA 1144 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~~~-----~~~~ 1144 (1283)
.|.|+|+.|+|||||++.+.+.+....+.+.+.+.+........+......+.|+...+.....++..... ....
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVV 82 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99998899971999999999999977997999984550122211465412343302466543001034441432231100
Q ss_pred CHHHHHHHHHHHCHHHHHHH-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999998072899983-99876542379999899469999999999715998889726667999798999999999
Q 000789 1145 TEEEIIAATEASNAHNFISA-LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALE 1223 (1283)
Q Consensus 1145 sd~ei~~al~~a~l~~~i~~-lp~Gldt~ige~G~~LSGGQrQRialARAll~~p~ILiLDEpTSaLD~~te~~I~~~l~ 1223 (1283)
..+++..... ... +.+.. ...+.+..+.+.....+......+.+.+.++..++++++...+..-+... .+.+.++
T Consensus 83 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (189)
T d2i3ba1 83 DLTSFEQLAL-PVL-RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPL--ALVEEIR 158 (189)
T ss_dssp CHHHHHTTTT-TTT-CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCC--TTHHHHH
T ss_pred CHHHHHHHHH-HHH-HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHHHH
T ss_conf 3777777889-999-99988762189706861433330535999999999854686599961555775569--9999986
Q ss_pred HHCCCCEEEEEEC
Q ss_conf 8729964999804
Q 000789 1224 RVMVNRTTVVVAH 1236 (1283)
Q Consensus 1224 ~~~~~~TvI~IaH 1236 (1283)
+ .++.+++.++.
T Consensus 159 ~-~~~~~~~~lt~ 170 (189)
T d2i3ba1 159 N-RKDVKVFNVTK 170 (189)
T ss_dssp T-TCCSEEEECCS
T ss_pred C-CCCCEEEEECH
T ss_conf 7-89974999786
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.027 Score=29.79 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=32.8
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC--CCCEEEEEECCCHHH
Q ss_conf 159988897266679997989999999-99872--996499980491477
Q 000789 1195 LKNPKILLLDEATSALDAESERVVQDA-LERVM--VNRTTVVVAHRLTTI 1241 (1283)
Q Consensus 1195 l~~p~ILiLDEpTSaLD~~te~~I~~~-l~~~~--~~~TvI~IaHrl~ti 1241 (1283)
..+..++++||.-++-++.....+..+ +..+. .++.+++.||.....
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 54660885322235877456667898764543204544289852468776
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.18 E-value=0.0024 Score=37.93 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=29.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8989999869998399999899729999986699
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFYDPDAGEVL 435 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~ 435 (1283)
+|+.++++|+||.|||||++.|.+......|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.04 E-value=0.012 Score=32.46 Aligned_cols=20 Identities=35% Similarity=0.303 Sum_probs=10.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998699983999998997
Q 000789 405 TAALVGQSGSGKSTVISLVE 424 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~ 424 (1283)
.+.++|++||||||+++.|.
T Consensus 4 lIii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998999999999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.0044 Score=35.95 Aligned_cols=47 Identities=15% Similarity=0.306 Sum_probs=33.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHH
Q ss_conf 9999869998399999899729999986699999606998988874451888268878801089
Q 000789 405 TAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLR 468 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~ 468 (1283)
+++|.|++||||||+.+.|...+....+. .++..+++|.+..+...+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~l 128 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQVL 128 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----------------CCEEEEEEEEEECCCHHH
T ss_conf 99996899998768999999997304689-----------------965999521568984588
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.003 Score=37.21 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898999986999839999989972999
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
.|..+.|+||||+||+||.+.|...++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.98 E-value=0.037 Score=28.78 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=26.4
Q ss_pred CCCCCEEE--EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 53121188--808989999869998399999899729
Q 000789 392 IFAGFSLH--VPSGTTAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 392 ~l~~i~l~--i~~g~~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
-|+.+ +. +++|+.+.|.|++|||||+++.-++-.
T Consensus 14 ~LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 14 RLDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp HHHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHH-HCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 79884-5689869849999918999999999999999
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.83 E-value=0.0024 Score=38.04 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=27.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8989999869998399999899729999986699999
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDG 438 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g 438 (1283)
.|+.+.|.|++||||||+.+.|.+.+.. --+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.74 E-value=0.046 Score=28.06 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=24.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88089899998699983999998997299
Q 000789 399 HVPSGTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 399 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.+++..-+.+.||+|+|||++++.+++.+
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 99988757887899876304778878771
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.0024 Score=37.96 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869998399999899729999
Q 000789 405 TAALVGQSGSGKSTVISLVERFYDP 429 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~~~ 429 (1283)
.++|+|++|||||||++-|.+.+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.66 E-value=0.049 Score=27.84 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 899998998870199888982787789
Q 000789 518 QKQRIAIARAILKNPKILLLDEATSAL 544 (1283)
Q Consensus 518 qkqrialARal~~~~~illLDE~ts~l 544 (1283)
++-|-.+.+|-...|-|+++||.-+-.
T Consensus 87 ~~l~~~f~~A~~~~p~il~ideid~l~ 113 (265)
T d1r7ra3 87 ANVREIFDKARQAAPCVLFFDELDSIA 113 (265)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSGGGTC
T ss_pred HHHHHHHHHHHHCCCCCEEHHHHHHCC
T ss_conf 999999999986398435687546324
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.66 E-value=0.0072 Score=34.30 Aligned_cols=41 Identities=32% Similarity=0.446 Sum_probs=33.4
Q ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 58850997999983999988899999960278996568988
Q 000789 1062 CLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLD 1102 (1283)
Q Consensus 1062 sl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~id 1102 (1283)
..-++.|..+.|+|++||||||+++.|++..++..=-|+|.
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEECC
T ss_conf 99998378889994035662578999865301456233113
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.64 E-value=0.0037 Score=36.54 Aligned_cols=31 Identities=32% Similarity=0.335 Sum_probs=26.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9799998399998889999996027899656
Q 000789 1068 GKTVALVGESGSGKSTVIALIERFYDPDSGH 1098 (1283)
Q Consensus 1068 Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~ 1098 (1283)
|+.+.|+||||||||||.+.|..-++.....
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~ 32 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFS 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTCEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 7499998999999999999998458997179
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.052 Score=27.65 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=23.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80898999986999839999989972999
Q 000789 400 VPSGTTAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 400 i~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
+++...+.+.||+|||||++++.++..+.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 99888678668998882289999999829
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.57 E-value=0.0046 Score=35.81 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089899998699983999998997299
Q 000789 401 PSGTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 401 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
++|-++.|+|++||||||+.+.|...+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.52 E-value=0.054 Score=27.48 Aligned_cols=26 Identities=35% Similarity=0.380 Sum_probs=21.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 80898999986999839999989972
Q 000789 400 VPSGTTAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 400 i~~g~~~~ivG~sGsGKSTl~~~l~g 425 (1283)
-++-+.+.++|++||||||+.+-++.
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 99998999989999989999999997
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.51 E-value=0.055 Score=27.46 Aligned_cols=155 Identities=13% Similarity=0.123 Sum_probs=73.0
Q ss_pred CCCCEEE-EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCHHHHHHH
Q ss_conf 4322158-850997999983999988899999960278996568988931899992787503288815777771219999
Q 000789 1057 IFRNLCL-SIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTN 1135 (1283)
Q Consensus 1057 vL~~isl-~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~Lf~gTIreN 1135 (1283)
-|+.+=- -+++|..+-|.|++||||||+..-++.-.--..+. +.|+.-|-. ...++++
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~-------------------~~~is~e~~--~~~~~~~ 72 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKER-------------------AILFAYEES--RAQLLRN 72 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCC-------------------EEEEESSSC--HHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC-------------------CCEEECCCC--HHHHHHH
T ss_conf 7988456898698499999189999999999999999872324-------------------411212679--9999999
Q ss_pred H-HCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHH
Q ss_conf 7-24899999999999999980728999839987654237999989946999999999971-599888972666799979
Q 000789 1136 I-AYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVL-KNPKILLLDEATSALDAE 1213 (1283)
Q Consensus 1136 l-~~~~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAll-~~p~ILiLDEpTSaLD~~ 1213 (1283)
. .++ .+.+++.. . +....+......... +...-.+.+++- .+|++++.|--++.....
T Consensus 73 ~~~~~----~~~~~~~~----~-----------~~~~~~~~~~~~~~~-~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~ 132 (242)
T d1tf7a2 73 AYSWG----MDFEEMER----Q-----------NLLKIVCAYPESAGL-EDHLQIIKSEINDFKPARIAIDSLSALARGV 132 (242)
T ss_dssp HHTTS----CCHHHHHH----T-----------TSEEECCCCGGGSCH-HHHHHHHHHHHHTTCCSEEEEECHHHHTSSS
T ss_pred HHHCC----CCHHHHHH----C-----------CCEEEEEEECCHHHH-HHHHHHHHHHHHHCCCCEEEEECCHHHHCCC
T ss_conf 99829----98699854----5-----------861799730001017-9999999999984088533220431430489
Q ss_pred HHHHHHHHH---HHH--CCCCEEEEEECCCH----------HHH-HCCEEEEEEC
Q ss_conf 899999999---987--29964999804914----------776-1398999959
Q 000789 1214 SERVVQDAL---ERV--MVNRTTVVVAHRLT----------TIK-NADIIAVVKN 1252 (1283)
Q Consensus 1214 te~~I~~~l---~~~--~~~~TvI~IaHrl~----------ti~-~~DrIivl~~ 1252 (1283)
+...+.+.+ ... ..++|++++.|... .+. .+|-|+.++.
T Consensus 133 ~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 133 SNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 9999999999999999986983999985675125544577640464216999998
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.44 E-value=0.0065 Score=34.65 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+++++|++|+|||||++.|.|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.40 E-value=0.037 Score=28.78 Aligned_cols=44 Identities=18% Similarity=0.344 Sum_probs=29.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 998889827877899998999999999870898399980482134
Q 000789 531 NPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTI 575 (1283)
Q Consensus 531 ~~~illLDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 575 (1283)
+..++++||+-. +.......+.+.+.........|+++++.+.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 724999424333-45431112210022135664300010211100
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.39 E-value=0.06 Score=27.16 Aligned_cols=166 Identities=17% Similarity=0.190 Sum_probs=79.3
Q ss_pred CCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCHHHHHHH
Q ss_conf 44322158850997999983999988899999960278996568988931899992787503288815777771219999
Q 000789 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTN 1135 (1283)
Q Consensus 1056 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~Lf~gTIreN 1135 (1283)
.++.+ +.||+.+.|+|++|+|||||+.-|+--. ..|.=..++.... ...+-|+.-|. ....+.+.
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~i--a~g~~~~~~~~~~-------~~~vl~~~~E~--~~~~~~~R 85 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQI--AGGPDLLEVGELP-------TGPVIYLPAED--PPTAIHHR 85 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHHHH--HTCCCTTCCCCCC-------CCCEEEEESSS--CHHHHHHH
T ss_pred HHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHH--HCCCCCCCCCCCC-------CCCEEEEECCC--HHHHHHHH
T ss_conf 98689----5589589999289998999999999999--7699721112357-------87368985123--49999999
Q ss_pred HH-CCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC----
Q ss_conf 72-4899999999999999980728999839987654237999989946999999999971599888972666799----
Q 000789 1136 IA-YGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL---- 1210 (1283)
Q Consensus 1136 l~-~~~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAll~~p~ILiLDEpTSaL---- 1210 (1283)
+. ++ .+.+.++......... +....+... ...-....-.+ +.-..+++++++|--++..
T Consensus 86 l~~~~--~~~~~~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~lvviD~l~~~~~~~~ 149 (274)
T d1nlfa_ 86 LHALG--AHLSAEERQAVADGLL-----------IQPLIGSLP--NIMAPEWFDGL-KRAAEGRRLMVLDTLRRFHIEEE 149 (274)
T ss_dssp HHHHH--TTSCHHHHHHHHHHEE-----------ECCCTTSCC--CTTSHHHHHHH-HHHHTTCSEEEEECGGGGCCSCT
T ss_pred HHHHH--HCCCHHHHHCCCCCCE-----------ECCCCCCCC--HHHHHHHHHHH-HHHCCCCCEEECCCHHHHCCCCC
T ss_conf 99986--2368666531233323-----------214567420--35789999998-87526765896281354226652
Q ss_pred -CHHHHHHHHHHHHHHC--CCCEEEEEECCCH------------------HHH-HCCEEEEEEC
Q ss_conf -9798999999999872--9964999804914------------------776-1398999959
Q 000789 1211 -DAESERVVQDALERVM--VNRTTVVVAHRLT------------------TIK-NADIIAVVKN 1252 (1283)
Q Consensus 1211 -D~~te~~I~~~l~~~~--~~~TvI~IaHrl~------------------ti~-~~DrIivl~~ 1252 (1283)
|......+...++.+. .++|++++.|--. .+. .+|.++.|..
T Consensus 150 ~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K~~~~~~~~~~~~~~~Gssai~~~a~~v~~l~r 213 (274)
T d1nlfa_ 150 NASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSS 213 (274)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CTGGGCSCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEE
T ss_conf 3225689999887777644797540131005554446886653356427778742558999983
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.33 E-value=0.0018 Score=39.04 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=17.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 898999986999839999989972999998669
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i 434 (1283)
+|+.++++|+||.|||||++.|.+......|+|
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v 128 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 128 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCC
T ss_conf 356499987787348789875151767640355
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.27 E-value=0.065 Score=26.89 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=23.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 79999839999888999999602789965689889
Q 000789 1069 KTVALVGESGSGKSTVIALIERFYDPDSGHVLLDN 1103 (1283)
Q Consensus 1069 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG 1103 (1283)
+.+.|+|++||||||+++.|.+-. .|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECH
T ss_conf 799998999999999999999957---99799603
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.23 E-value=0.0051 Score=35.44 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999839999989972999
Q 000789 405 TAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
+++|.|++|||||||.+.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.0065 Score=34.63 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=36.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE--E----------EECCCCCCCCCHHHHHCCE
Q ss_conf 99799998399998889999996027899656--8----------9889318999927875032
Q 000789 1067 SGKTVALVGESGSGKSTVIALIERFYDPDSGH--V----------LLDNIELPKFKLSWLRQQM 1118 (1283)
Q Consensus 1067 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~--I----------~idG~di~~~~~~~lR~~i 1118 (1283)
.|..+.|+||||||||||.+.|+.-++...-. | ..||+|..-++.+.+.+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i 64 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 64 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEECHHHHHHHH
T ss_conf 9809999999999999999999863986684278887636788655432123343289999875
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.22 E-value=0.0054 Score=35.26 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=16.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 89999869998399999899729999
Q 000789 404 TTAALVGQSGSGKSTVISLVERFYDP 429 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~~~ 429 (1283)
..++|+|++|||||||+.-|.+.+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 09999809999899999999999986
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.18 E-value=0.0079 Score=33.96 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=27.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9979999839999888999999602789965689889
Q 000789 1067 SGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDN 1103 (1283)
Q Consensus 1067 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG 1103 (1283)
.|+.+.|+|++||||||+.+.|.+.+.. --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.16 E-value=0.0025 Score=37.88 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=30.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99799998399998889999996027899656898
Q 000789 1067 SGKTVALVGESGSGKSTVIALIERFYDPDSGHVLL 1101 (1283)
Q Consensus 1067 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~i 1101 (1283)
+|+++.++|+||.|||||++.|.+-.....|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf 35649998778734878987515176764035553
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.16 E-value=0.045 Score=28.13 Aligned_cols=115 Identities=19% Similarity=0.256 Sum_probs=65.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHHCCCCCCCH
Q ss_conf 08989999869998399999899729999986699999606998988874451888268878801089998439999999
Q 000789 401 PSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATD 480 (1283)
Q Consensus 401 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~ 480 (1283)
.++-.+.+.||+||||||.+..++...+....+|. .+. +|.=+ ..+..
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~-------------------tiE-dPiE~----------~~~~~-- 203 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNIL-------------------TVE-DPIEF----------DIDGI-- 203 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE-------------------EEE-SSCCS----------CCSSS--
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEE-------------------EEC-CCCCC----------CCCCC--
T ss_conf 41054898767877744779998666257874699-------------------962-67434----------56788--
Q ss_pred HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99999999932999998488986530038999899578999989988701998889827877899998999999999870
Q 000789 481 QEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIM 560 (1283)
Q Consensus 481 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~ 560 (1283)
.+..+.+ ..|+.---++..++=++|++++..|.. |.++.....++- .
T Consensus 204 ----------------------~q~~v~~-----~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa---~ 250 (401)
T d1p9ra_ 204 ----------------------GQTQVNP-----RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQAS---L 250 (401)
T ss_dssp ----------------------EEEECBG-----GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHH---H
T ss_pred ----------------------CEEEECC-----CCCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHHH---H
T ss_conf ----------------------7026558-----767799999999984138889845768---759999999997---2
Q ss_pred CCCEEEEEECCCHHHHCCCE
Q ss_conf 89839998048213420688
Q 000789 561 TSRTTVVVAHRLTTIRNADL 580 (1283)
Q Consensus 561 ~~~t~i~itH~~~~~~~~d~ 580 (1283)
.|..|+..-|--+.....+|
T Consensus 251 tGhlV~tTlHa~~a~~~~~R 270 (401)
T d1p9ra_ 251 TGHLVMSTLHTNTAVGAVTR 270 (401)
T ss_dssp TTCEEEEEECCSSSHHHHHH
T ss_pred CCCEEEEEECCCCHHHHHHH
T ss_conf 49858998336766766543
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.11 E-value=0.0055 Score=35.20 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9899998699983999998997299
Q 000789 403 GTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 403 g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
-+.++|.|++|||||||++.|+..+
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3289998999998999999999984
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.11 E-value=0.0068 Score=34.50 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.11 E-value=0.009 Score=33.52 Aligned_cols=27 Identities=22% Similarity=0.560 Sum_probs=24.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089899998699983999998997299
Q 000789 401 PSGTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 401 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
|+|-.+.|.|++||||||+.+.|...+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.10 E-value=0.0098 Score=33.26 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98999986999839999989972999
Q 000789 403 GTTAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 403 g~~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
.+.+.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.09 E-value=0.072 Score=26.52 Aligned_cols=89 Identities=22% Similarity=0.270 Sum_probs=51.1
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 50997999983999988899999960278996568988931899992787503288815777771219999724899999
Q 000789 1065 IPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGA 1144 (1283)
Q Consensus 1065 I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~~~~~~~ 1144 (1283)
-++-+.+-++|+.||||||+++-++.- .|.+.++ +|. + .
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~--------------------~D~----------~--~----- 49 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVN--------------------RDT----------L--G----- 49 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEE--------------------HHH----------H--C-----
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEEC--------------------HHH----------H--H-----
T ss_conf 999989999899999899999999976----5978976--------------------077----------7--7-----
Q ss_pred CHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 9999999999807289998399876542379999899469999-99999971599888972
Q 000789 1145 TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQR-IAIARAVLKNPKILLLD 1204 (1283)
Q Consensus 1145 sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQR-ialARAll~~p~ILiLD 1204 (1283)
+.+.+.+.++. .+..|.+..++ ..+++-.+|++ +.+|+..=-+..++.||
T Consensus 50 ~~~~~~~~~~~--------~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 50 SWQRCVSSCQA--------ALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp SHHHHHHHHHH--------HHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHHHHH--------HHHCCCCCEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 88899999999--------99779995551--76799999999999998558887999948
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.09 E-value=0.0089 Score=33.58 Aligned_cols=29 Identities=31% Similarity=0.573 Sum_probs=23.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 99998699983999998997299999866
Q 000789 405 TAALVGQSGSGKSTVISLVERFYDPDAGE 433 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~ 433 (1283)
.++|+|++|+|||||+|.|.|.-.-.+|.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~ 86 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEGA 86 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79998999997899999995888677756
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.08 E-value=0.0082 Score=33.86 Aligned_cols=49 Identities=14% Similarity=0.319 Sum_probs=35.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCHHHHHHH
Q ss_conf 999983999988899999960278996568988931899992787503288815777771219999
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTN 1135 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~Lf~gTIreN 1135 (1283)
.|||.|++||||||+.+.|..+..-..+ ...+..|++|.++.+...++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~~ 130 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLKE 130 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHHHH
T ss_conf 9999689999876899999999730468-----------------996599952156898458888
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.02 E-value=0.008 Score=33.95 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=29.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCC
Q ss_conf 9999869998399999899729999986699999606998988874451888268878
Q 000789 405 TAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPIL 462 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~l 462 (1283)
.+||.|++||||||+.+.|...+....-. .....+.++++|.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~--------------~~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD--------------YRQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSC--------------GGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCC--------------CCCCCEEEEECCCCC
T ss_conf 99998999787999999999996410134--------------578843999346532
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.01 E-value=7.4e-05 Score=49.71 Aligned_cols=35 Identities=23% Similarity=0.157 Sum_probs=27.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 89999869998399999899729999986699999
Q 000789 404 TTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDG 438 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g 438 (1283)
..+.|+||+|+|||||++.+.+.+....+.+.+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 69999889997199999999999997799799998
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.88 E-value=0.081 Score=26.12 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=27.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 8509979999839999888999999602789965689889318
Q 000789 1064 SIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL 1106 (1283)
Q Consensus 1064 ~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di 1106 (1283)
.+++...+-+.||+|+|||++++.+.+.+... -+.++..++
T Consensus 41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l 81 (256)
T d1lv7a_ 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (256)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHHHH
T ss_conf 99988867866899888228999999982998--799886994
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.84 E-value=0.0064 Score=34.68 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999839999989972999
Q 000789 406 AALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 406 ~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
+.|+|||||||+||++.|...++
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=0.06 Score=27.15 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=18.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 989999869998399999899729
Q 000789 403 GTTAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 403 g~~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
|=+++++|++++|||||++.|.|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.76 E-value=0.011 Score=33.00 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.++++|++|+|||||++.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.75 E-value=0.011 Score=32.89 Aligned_cols=27 Identities=41% Similarity=0.405 Sum_probs=22.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089899998699983999998997299
Q 000789 401 PSGTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 401 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+.+..+.|+|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.73 E-value=0.011 Score=32.89 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=25.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0997999983999988899999960278
Q 000789 1066 PSGKTVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1066 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
++|..|.|+|.+||||||+.+.|.+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.68 E-value=0.011 Score=32.85 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=22.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 8999986999839999989972999998
Q 000789 404 TTAALVGQSGSGKSTVISLVERFYDPDA 431 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~~~~~ 431 (1283)
+.++|.|++||||||+.+.|...+....
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 8899989999898999999999998769
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.014 Score=32.02 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=15.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699983999998997299
Q 000789 404 TTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
..+.|+||||+||+||.+.|...+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.0051 Score=35.46 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999983999988899999960278996
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDPDS 1096 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p~~ 1096 (1283)
.++|+|++|||||||++-|.+.+....
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g 30 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARG 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 899991899989999999999999779
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.60 E-value=0.0072 Score=34.31 Aligned_cols=44 Identities=34% Similarity=0.321 Sum_probs=30.3
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCCCC
Q ss_conf 88808989999869998399999899729999--986699999606
Q 000789 398 LHVPSGTTAALVGQSGSGKSTVISLVERFYDP--DAGEVLIDGIDI 441 (1283)
Q Consensus 398 l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~--~~G~i~i~g~~~ 441 (1283)
+.-++|.++.+.|.|||||||+.+.|...+.. .--.+.+||..+
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 8589986999989999998999999998877742750899753678
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.005 Score=35.50 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898999986999839999989972999
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
+|-++.++|++||||||+.+.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.36 E-value=0.015 Score=31.92 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=25.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 89999869998399999899729999986699999
Q 000789 404 TTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDG 438 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g 438 (1283)
..+.|+|++||||||+++.|.+.+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.32 E-value=0.015 Score=31.85 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998399998889999996027899
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDPD 1095 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p~ 1095 (1283)
.|||.|++|||||||++.|...+...
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~~ 49 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLREQ 49 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 99978988789999999999983634
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.32 E-value=0.015 Score=31.74 Aligned_cols=28 Identities=29% Similarity=0.631 Sum_probs=25.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0997999983999988899999960278
Q 000789 1066 PSGKTVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1066 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
++|-+|.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.20 E-value=0.11 Score=24.99 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=20.9
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 1888089899998699983999998997299
Q 000789 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 397 ~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
++.-.+...+++|||+|+||||.+--|+..+
T Consensus 5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6799999899998999998899999999999
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.20 E-value=0.015 Score=31.71 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=24.8
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 50997999983999988899999960278
Q 000789 1065 IPSGKTVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1065 I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
-+.+..+.|+|++||||||+.+.|.+-+.
T Consensus 3 ~~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 3 NHDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99871899989999898999999999869
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.19 E-value=0.015 Score=31.73 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
.++++|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.08 E-value=0.019 Score=31.10 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999983999988899999960278
Q 000789 1068 GKTVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1068 Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
.+.|.|.|++||||||+.+.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.00 E-value=0.021 Score=30.73 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+++++|++|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.98 E-value=0.017 Score=31.45 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699983999998997299
Q 000789 404 TTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+.+.++|++||||||+.+.|+..+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.97 E-value=0.014 Score=32.08 Aligned_cols=25 Identities=36% Similarity=0.651 Sum_probs=22.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999983999988899999960278
Q 000789 1069 KTVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1069 e~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
++|+|+|++|||||||++.|...+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.95 E-value=0.028 Score=29.71 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999839999989972999
Q 000789 405 TAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
.++++|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.93 E-value=0.013 Score=32.24 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.93 E-value=0.016 Score=31.63 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699983999998997299
Q 000789 406 AALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 406 ~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+.|+|||||||+|+.+.|...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.90 E-value=0.021 Score=30.74 Aligned_cols=27 Identities=33% Similarity=0.644 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089899998699983999998997299
Q 000789 401 PSGTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 401 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
|+|-.+.|+||.||||||..+.|+..|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.88 E-value=0.061 Score=27.06 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
+++|.|+.|||||||...|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9983799878899999999999
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.85 E-value=0.023 Score=30.42 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+++++|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=0.023 Score=30.36 Aligned_cols=45 Identities=27% Similarity=0.419 Sum_probs=31.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCC
Q ss_conf 99998399998889999996027899656898893189999278750328881577777
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLF 1128 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~Lf 1128 (1283)
.|||.|++||||||+.+.|...+.... + ..-...+.++++|.+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~--~------------~~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE--V------------DYRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG--S------------CGGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC--C------------CCCCCCEEEEECCCCCC
T ss_conf 999989997879999999999964101--3------------45788439993465322
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.78 E-value=0.023 Score=30.44 Aligned_cols=77 Identities=12% Similarity=0.096 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEE
Q ss_conf 94699999999997159988897266679997989999-999998729964999804914776139899995988988
Q 000789 1181 SGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV-QDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAE 1257 (1283)
Q Consensus 1181 SGGQrQRialARAll~~p~ILiLDEpTSaLD~~te~~I-~~~l~~~~~~~TvI~IaHrl~ti~~~DrIivl~~G~Ive 1257 (1283)
...+......+...++++++++++=.-..-+...+... .+.++....++.+|++....+........--...-.+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~~ 141 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIR 141 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 520247899999998741332011025654203455544455542014101020465444335588798727996799
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.70 E-value=0.042 Score=28.37 Aligned_cols=42 Identities=19% Similarity=0.380 Sum_probs=28.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCH
Q ss_conf 9988897266679997989999999998729964999804914
Q 000789 1197 NPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLT 1239 (1283)
Q Consensus 1197 ~p~ILiLDEpTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ 1239 (1283)
+.+++++||+-. |...+...+.+.+.+....+..|++|++.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCC
T ss_conf 724999424333-454311122100221356643000102111
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.69 E-value=0.013 Score=32.17 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
.+||+|++++|||||++.|.|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.68 E-value=0.02 Score=30.89 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9899998699983999998997299
Q 000789 403 GTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 403 g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
...+.|+||.||||||+.+.|+..|
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9489998999998899999999997
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.66 E-value=0.038 Score=28.71 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9799998399998889999996027
Q 000789 1068 GKTVALVGESGSGKSTVIALIERFY 1092 (1283)
Q Consensus 1068 Ge~vaIVG~SGSGKSTL~~lL~rl~ 1092 (1283)
+=+|||+|++|+|||||++.|++--
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.62 E-value=0.015 Score=31.90 Aligned_cols=36 Identities=22% Similarity=0.163 Sum_probs=26.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCC
Q ss_conf 799998399998889999996027899---656898893
Q 000789 1069 KTVALVGESGSGKSTVIALIERFYDPD---SGHVLLDNI 1104 (1283)
Q Consensus 1069 e~vaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~idG~ 1104 (1283)
+.++|+|++|||||||+.-|.+.+... -|.|.-|+.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 099998099998999999999999867983799983167
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.58 E-value=0.025 Score=30.04 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999983999988899999960278
Q 000789 1068 GKTVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1068 Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
...+.|+||||+||+||++.|++-++
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.58 E-value=0.026 Score=29.92 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
.++++|.+++|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.57 E-value=0.034 Score=29.10 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=27.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 0997999983999988899999960278996568988
Q 000789 1066 PSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLD 1102 (1283)
Q Consensus 1066 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~id 1102 (1283)
++|-++.|+||.||||||+.+.|..-| |-..++
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~----g~~~i~ 33 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF----CVCHLA 33 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH----TCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 996389998999998899999999986----985775
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.56 E-value=0.019 Score=30.98 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=25.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 799998399998889999996027899656898893
Q 000789 1069 KTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI 1104 (1283)
Q Consensus 1069 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~ 1104 (1283)
..+.|+|++||||||+++.|.+-+. +...++|-
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~d 35 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEGD 35 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEHH
T ss_conf 0899989999998999999999809---98898307
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.53 E-value=0.026 Score=29.91 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
.++|+|++|+|||||++.|.+.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.018 Score=31.16 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898999986999839999989972999
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
++..++|-|+.||||||++++|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.42 E-value=0.015 Score=31.78 Aligned_cols=28 Identities=43% Similarity=0.513 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9979999839999888999999602789
Q 000789 1067 SGKTVALVGESGSGKSTVIALIERFYDP 1094 (1283)
Q Consensus 1067 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p 1094 (1283)
+|..|.|+|++||||||+.+.|.+.+..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~ 45 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLVC 45 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9969998899999999999999999974
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.39 E-value=0.018 Score=31.15 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8989999869998399999899729999
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFYDP 429 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 429 (1283)
..-.++|+|+.|+|||||+..|.+.+..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8328974389999899999999999975
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.37 E-value=0.016 Score=31.66 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869998399999899729
Q 000789 406 AALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 406 ~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
+||+|++++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.31 E-value=0.027 Score=29.87 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999888999999602
Q 000789 1070 TVALVGESGSGKSTVIALIERF 1091 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl 1091 (1283)
+|+|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.30 E-value=0.022 Score=30.51 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 898999986999839999989972999998669999
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLID 437 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~ 437 (1283)
+-..+.|+||.||||||+.+.|+..| |-+.++
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 97289998999999899999999985----990885
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.25 E-value=0.071 Score=26.57 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.25 E-value=0.021 Score=30.72 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=25.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 97999983999988899999960278996568
Q 000789 1068 GKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099 (1283)
Q Consensus 1068 Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1099 (1283)
...|+|.|+.||||||+++.|...+......+
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 98899989999898999999999998769986
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.13 E-value=0.049 Score=27.83 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=21.4
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHH
Q ss_conf 199888982787789999899999999987089839998048213
Q 000789 530 KNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTT 574 (1283)
Q Consensus 530 ~~~~illLDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 574 (1283)
.+.+++|+|-.. .+. +.+..+.+.+.+. ++.+++|-...+.
T Consensus 134 ~~~d~~l~~~~~-~~~-~~d~~l~~~l~~~--~k~~~~V~nK~D~ 174 (400)
T d1tq4a_ 134 YEYDFFIIISAT-RFK-KNDIDIAKAISMM--KKEFYFVRTKVDS 174 (400)
T ss_dssp GGCSEEEEEESS-CCC-HHHHHHHHHHHHT--TCEEEEEECCHHH
T ss_pred HCCEEEEEECCC-CCC-HHHHHHHHHHHHC--CCCEEEEEECCCC
T ss_conf 226599996588-887-8899999999976--9987999708632
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.10 E-value=0.035 Score=28.99 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999839999989972999
Q 000789 405 TAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
.++++|.+||||||+.+.|++.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.10 E-value=0.034 Score=29.10 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999983999988899999960278
Q 000789 1069 KTVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1069 e~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
..|.|+|++||||||+.+.|..-+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7499989999999999999999969
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.09 E-value=0.026 Score=29.97 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89899998699983999998997299
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+.-+++++|++|+|||||++.+.+-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 77789999999989899999996788
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.07 E-value=0.035 Score=29.00 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
++++||.+|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.06 E-value=0.028 Score=29.69 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999988899999960278
Q 000789 1070 TVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
+|.|+|++||||||+.+.|..-+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 798989999998999999999979
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.01 E-value=0.028 Score=29.69 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=29.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC-------------CCCEEEECCCCCCCCCHHHHHC
Q ss_conf 999839999888999999602789-------------9656898893189999278750
Q 000789 1071 VALVGESGSGKSTVIALIERFYDP-------------DSGHVLLDNIELPKFKLSWLRQ 1116 (1283)
Q Consensus 1071 vaIVG~SGSGKSTL~~lL~rl~~p-------------~~G~I~idG~di~~~~~~~lR~ 1116 (1283)
|.|+|||||||+||++.|+.-++. ..|+ .||+|..-++.+.+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~~ 60 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKS 60 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--CCCCCCEECCHHHHHH
T ss_conf 99989999998999999997488662477764268999997--5784324324889999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.89 E-value=0.046 Score=28.06 Aligned_cols=29 Identities=24% Similarity=0.185 Sum_probs=24.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 08989999869998399999899729999
Q 000789 401 PSGTTAALVGQSGSGKSTVISLVERFYDP 429 (1283)
Q Consensus 401 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 429 (1283)
++|.+++|.|+-||||||+.+.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.87 E-value=0.06 Score=27.13 Aligned_cols=27 Identities=37% Similarity=0.722 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898999986999839999989972999
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
++..+++|||+|+||||.+--|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 977999989999988999999999999
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.85 E-value=0.04 Score=28.52 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869998399999899729
Q 000789 406 AALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 406 ~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
+||+|+..+|||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=92.85 E-value=0.039 Score=28.61 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
++.++|++|+|||||++-+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=92.84 E-value=0.017 Score=31.38 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=17.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9899998699983999998997299
Q 000789 403 GTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 403 g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.-.++++|++++|||||++.|.+.-
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.82 E-value=0.038 Score=28.66 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399998889999996027
Q 000789 1070 TVALVGESGSGKSTVIALIERFY 1092 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~ 1092 (1283)
+|+++|++|+|||||++.|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.81 E-value=0.037 Score=28.73 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
.++|+|++||||||+++.|...
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.80 E-value=0.04 Score=28.52 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+++++|++|+|||||++.+.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.79 E-value=0.039 Score=28.61 Aligned_cols=32 Identities=41% Similarity=0.498 Sum_probs=25.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 997999983999988899999960278996568988
Q 000789 1067 SGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLD 1102 (1283)
Q Consensus 1067 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~id 1102 (1283)
+...|.|+||.||||||+.+.|..-| |-+.++
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 99489998999998899999999997----992672
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.68 E-value=0.039 Score=28.60 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=21.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8089899998699983999998997299
Q 000789 400 VPSGTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 400 i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
++.+.++.|.||.||||||+.+.|+..|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.65 E-value=0.043 Score=28.28 Aligned_cols=24 Identities=38% Similarity=0.696 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999988899999960278
Q 000789 1070 TVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
.++|+|+.|||||||++.|++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.61 E-value=0.045 Score=28.11 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999839999989972999
Q 000789 405 TAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
.++|-||+||||||..+.|+..|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.57 E-value=0.041 Score=28.41 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=27.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEE
Q ss_conf 099799998399998889999996027899656-898
Q 000789 1066 PSGKTVALVGESGSGKSTVIALIERFYDPDSGH-VLL 1101 (1283)
Q Consensus 1066 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~-I~i 1101 (1283)
.++-.+-+.||+||||||.+..+++..+..... +++
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~ti 192 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 192 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 4105489876787774477999866625787469996
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.53 E-value=0.068 Score=26.70 Aligned_cols=29 Identities=14% Similarity=0.330 Sum_probs=24.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88089899998699983999998997299
Q 000789 399 HVPSGTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 399 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
-+++|+.+.|.|++|||||||+.-++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.51 E-value=0.063 Score=26.97 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=25.0
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 85099799998399998889999996027
Q 000789 1064 SIPSGKTVALVGESGSGKSTVIALIERFY 1092 (1283)
Q Consensus 1064 ~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1092 (1283)
-+++|+.+-|.|++||||||+..-++.-.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.49 E-value=0.2 Score=23.05 Aligned_cols=95 Identities=20% Similarity=0.308 Sum_probs=48.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHHCCCCCCCHH
Q ss_conf 89899998699983999998997299999866999996069989888744518882688788010899984399999999
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQ 481 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~ 481 (1283)
....+++|||+|+||||.+--|+..+.. .| .+++++.=|.+-.. ..+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~-~g------------------~kV~lit~Dt~R~g--------------a~e 57 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKK-KG------------------FKVGLVGADVYRPA--------------ALE 57 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHH-TT------------------CCEEEEECCCSSHH--------------HHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH-CC------------------CCEEEEEEECCCCC--------------HHH
T ss_conf 9989999899999989999999999997-79------------------93699972023551--------------567
Q ss_pred HHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 999999993299999848898653003899989957899998998870199888982787789
Q 000789 482 EIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544 (1283)
Q Consensus 482 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~~~~illLDE~ts~l 544 (1283)
++..-+ +.+ |...........+ -.-.+=++..+...+.++++.| |++.
T Consensus 58 QL~~~a---------~~l--~v~~~~~~~~~~~--~~~~~~a~~~~~~~~~d~IlID--TaGr 105 (211)
T d1j8yf2 58 QLQQLG---------QQI--GVPVYGEPGEKDV--VGIAKRGVEKFLSEKMEIIIVD--TAGR 105 (211)
T ss_dssp HHHHHH---------HHH--TCCEECCTTCCCH--HHHHHHHHHHHHHTTCSEEEEE--CCCS
T ss_pred HHHHHC---------CCC--CCCEEECCCCHHH--HHHHHHHHHHHHCCCCCEEEEE--CCCC
T ss_conf 898740---------146--8422302441024--4789999987402677369985--3776
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.45 E-value=0.039 Score=28.62 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699983999998997299
Q 000789 404 TTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
-+++|.|..||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.41 E-value=0.041 Score=28.44 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.+.|+|++||||||+.+.|+..+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999983
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=92.37 E-value=0.042 Score=28.34 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699983999998997299
Q 000789 404 TTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+.+.++|++||||||+.+.|+..+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.33 E-value=0.048 Score=27.89 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99983999988899999960278
Q 000789 1071 VALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1071 vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
|.|+|||||||+||.+.|...++
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.22 E-value=0.1 Score=25.36 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|++|+|||||++-+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899298999999971
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.20 E-value=0.083 Score=26.04 Aligned_cols=33 Identities=33% Similarity=0.363 Sum_probs=24.5
Q ss_pred CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5312118880898999986999839999989972
Q 000789 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 392 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g 425 (1283)
.++...+.+ .|.-+.+.|+||+||||+...+..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.19 E-value=0.063 Score=26.97 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=24.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8989999869998399999899729999
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFYDP 429 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 429 (1283)
+|.++++-|.-||||||++++|...+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.16 E-value=0.057 Score=27.31 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
.+||+|..||||||+.+.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.13 E-value=0.026 Score=29.97 Aligned_cols=117 Identities=20% Similarity=0.259 Sum_probs=61.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCCCH
Q ss_conf 99799998399998889999996027899656898893189999278750328881577777121999972489999999
Q 000789 1067 SGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATE 1146 (1283)
Q Consensus 1067 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~~~~~~~sd 1146 (1283)
+-..+.|+||.||||||+.+.|..-| |-+.|+.-| -+|+.+ .+...-....+++-..-+. ...+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~gd-------l~R~~~---~~~~~~~~~~i~~~~~~~~--~~~~ 70 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAGD-------LLRAEQ---GRAGSQYGELIKNCIKEGQ--IVPQ 70 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHHH-------HHHHHH---HSTTCSCHHHHHHHHHTTC--CCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHHH-------HHHHHH---HHCCCHHHHHHHHHHHCCC--CCCC
T ss_conf 97289998999999899999999985----990885358-------999886---2010178899887640000--2320
Q ss_pred HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999999998072899983998765423799998994699999999997159988897266
Q 000789 1147 EEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEA 1206 (1283)
Q Consensus 1147 ~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAll~~p~ILiLDEp 1206 (1283)
..+.......-...... .-+..+-++ .-....|...+.+.+.....++.||=|
T Consensus 71 ~~~~~~~~~~~~~~~~~----~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 71 EITLALLRNAISDNVKA----NKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHHHHHT----TCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHHHCC----CCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 36789999998864003----777535404---313689999999861545543125798
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=92.13 E-value=0.0023 Score=38.20 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=28.0
Q ss_pred CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 531211888089899998699983999998997299
Q 000789 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 392 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.+++..+.+.+| ++.|+|+|||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.10 E-value=0.22 Score=22.70 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699983999998997299
Q 000789 404 TTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.-+.+.||+|+|||++++.+++.+
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 648876689888359999999873
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.00 E-value=0.047 Score=27.96 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.+.|.||.||||||..+.|+..|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.96 E-value=0.065 Score=26.89 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399998889999996027
Q 000789 1070 TVALVGESGSGKSTVIALIERFY 1092 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~ 1092 (1283)
+|+++|++|+|||||++.|+|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.91 E-value=0.035 Score=28.93 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.+.|.||.||||||+.+.|+.-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.90 E-value=0.053 Score=27.55 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999888999999602
Q 000789 1070 TVALVGESGSGKSTVIALIERF 1091 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl 1091 (1283)
.|+|||++|+|||||++.|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.88 E-value=0.073 Score=26.48 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898999986999839999989972999
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
+|.++++-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=0.037 Score=28.77 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999983999988899999960278
Q 000789 1067 SGKTVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1067 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
++..|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=91.85 E-value=0.044 Score=28.19 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8999986999839999989972999
Q 000789 404 TTAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
+++.|.|++||||||+++.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.82 E-value=0.082 Score=26.09 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+++++|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.82 E-value=0.24 Score=22.48 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=19.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099799998399998889999996027
Q 000789 1066 PSGKTVALVGESGSGKSTVIALIERFY 1092 (1283)
Q Consensus 1066 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1092 (1283)
++...+++|||+|+||||.+.=|...+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999899998999998899999999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.81 E-value=0.05 Score=27.77 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.+.|+||.||||||+.+.|+..|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.79 E-value=0.073 Score=26.49 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|++|+|||||++-+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.78 E-value=0.028 Score=29.75 Aligned_cols=45 Identities=29% Similarity=0.203 Sum_probs=33.3
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCCCCCC
Q ss_conf 8509979999839999888999999602789--96568988931899
Q 000789 1064 SIPSGKTVALVGESGSGKSTVIALIERFYDP--DSGHVLLDNIELPK 1108 (1283)
Q Consensus 1064 ~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~idG~di~~ 1108 (1283)
.=++|..|-+.|.||||||||.+.|...+.. ..-.+.+||-+++.
T Consensus 20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 20 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 58998699998999999899999999887774275089975367887
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=91.75 E-value=0.069 Score=26.69 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399998889999996027
Q 000789 1070 TVALVGESGSGKSTVIALIERFY 1092 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~ 1092 (1283)
+|+++|++|+|||||++.|++--
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=91.75 E-value=0.051 Score=27.68 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
++.|+||.||||||+.+.|+..|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.74 E-value=0.022 Score=30.48 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699983999998997299
Q 000789 404 TTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
-.++|.|+|||||||+.+.+...+
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998999780999999999997
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.64 E-value=0.07 Score=26.61 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999839999888999999602789
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDP 1094 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p 1094 (1283)
.|+|-||+||||||..++|..-|..
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~ 29 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGF 29 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997899987989999999999699
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.63 E-value=0.071 Score=26.60 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999869998399999899729
Q 000789 404 TTAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
..++|+|+.|+|||||++.+.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.57 E-value=0.066 Score=26.84 Aligned_cols=37 Identities=14% Similarity=0.358 Sum_probs=26.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 898999986999839999989972999998669999960
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGID 440 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~ 440 (1283)
|+.-+.++||+|||||.|++.+++.+. .--+.+++.+
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~s~ 84 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATK 84 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC--CCHHCCCCCC
T ss_conf 986699989999888899999862132--2100034433
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.57 E-value=0.088 Score=25.86 Aligned_cols=51 Identities=25% Similarity=0.287 Sum_probs=33.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCCCCEEEECCCCCCCCCHHHHHCCCEEE
Q ss_conf 99998699983999998997299--99986699999606998988874451888
Q 000789 405 TAALVGQSGSGKSTVISLVERFY--DPDAGEVLIDGIDIKKLQLKWIREKIGLV 456 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~~~~~i~~v 456 (1283)
.++|+|+.|+|||||+..|+..- ....|++. +|..+.+..+++..+++++-
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~ 56 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVR 56 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEE
T ss_conf 999994889809999999999709755306622-22113562698887387687
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.55 E-value=0.061 Score=27.10 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=23.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 79999839999888999999602789965689889
Q 000789 1069 KTVALVGESGSGKSTVIALIERFYDPDSGHVLLDN 1103 (1283)
Q Consensus 1069 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG 1103 (1283)
+.+.++|++||||||+.+.|..-+. --.+|+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg----~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALG----YEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT----CEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHC----CCEEEH
T ss_conf 9889988999988999999999949----987865
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.51 E-value=0.071 Score=26.58 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999839999888999999602789
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDP 1094 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p 1094 (1283)
.|.+||.+||||||+++.|.+.+..
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~~ 28 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLNF 28 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999899999999999999999974
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.45 E-value=0.043 Score=28.24 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=66.6
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 50997999983999988899999960278996568988931899992787503288815777771219999724899999
Q 000789 1065 IPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGA 1144 (1283)
Q Consensus 1065 I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~~~~~~~ 1144 (1283)
++.+..+.|+||.||||||+.+.|..-| |-..|+.-+ -+|+.+ .... ....++.+.+.-+ ...
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~---~~~~-~~~~~~~~~~~~~--~~~ 67 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEV---SSGS-ARGKMLSEIMEKG--QLV 67 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHH---HHTC-HHHHHHHHHHTTT--CCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCH-------HHHHHH---HHHH-HHHHHHHHHHHHC--CCC
T ss_conf 4678289998999998799999999986----984683347-------899999---8767-6514567777631--377
Q ss_pred CHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 999999999980728999839987654237999989946999999999971599888972666
Q 000789 1145 TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEAT 1207 (1283)
Q Consensus 1145 sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAll~~p~ILiLDEpT 1207 (1283)
+++.+...+.. .+...+...+..+-+ ....-..|--.+.+.+.....++.+|.+.
T Consensus 68 ~~~~~~~~~~~-----~l~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~~ 122 (194)
T d3adka_ 68 PLETVLDMLRD-----AMVAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAGP 122 (194)
T ss_dssp CHHHHHHHHHH-----HHHTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECCH
T ss_pred CHHEEEEEHHH-----HHHHCCCCCCCCEEE---ECCCHHHHHHHHHHHHCCCCCHHCCCCCH
T ss_conf 62224410245-----664032235660243---11101578999999837752000033312
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.44 E-value=0.071 Score=26.58 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999888999999602
Q 000789 1070 TVALVGESGSGKSTVIALIERF 1091 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl 1091 (1283)
+|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=91.36 E-value=0.26 Score=22.14 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=17.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9899998699983999998997299
Q 000789 403 GTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 403 g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+..++++||+|+||||.+--|+..+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8689998999998899999999999
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.31 E-value=0.14 Score=24.25 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|++|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.30 E-value=0.052 Score=27.62 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999983999988899999960278
Q 000789 1069 KTVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1069 e~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
-.|+|-|..||||||+++.|.+.+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.25 E-value=0.061 Score=27.09 Aligned_cols=34 Identities=32% Similarity=0.333 Sum_probs=26.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 899998699983999998997299999866999996
Q 000789 404 TTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGI 439 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~ 439 (1283)
..+.++||+||||||+++.|++.+.. +-+.+++-
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~d 66 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDND 66 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECTH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC--CEEEEECH
T ss_conf 79998897998899999999998651--54898328
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=91.23 E-value=0.0033 Score=36.89 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=28.4
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 432215885099799998399998889999996027
Q 000789 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFY 1092 (1283)
Q Consensus 1057 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1092 (1283)
.+++.++.+.+| .+.|+|+|||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.20 E-value=0.085 Score=25.98 Aligned_cols=116 Identities=21% Similarity=0.208 Sum_probs=58.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 99998399998889999996027899656898893189999278750328881577777121999972489999999999
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEEEI 1149 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~~~~~~~sd~ei 1149 (1283)
+|.|+||.||||||..+.|..-| |-..++-- +-+|..+ -++...+...+.+.+.-+ ...+|+.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~g-------~llR~~~---~~~~~~~~~~~~~~~~~~--~~v~d~~~ 66 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSAG-------ELLRDER---KNPDSQYGELIEKYIKEG--KIVPVEIT 66 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HCTTSTTHHHHHHHHHTT--CCCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECHH-------HHHHHHH---HHHHHHHHHHHHHHHHCC--CCCCCCHH
T ss_conf 99997999999899999999986----99267688-------9999988---762046899999997069--72113403
Q ss_pred HHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--CE-EEEECC
Q ss_conf 9999980728999839987654237999989946999999999971599--88-897266
Q 000789 1150 IAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNP--KI-LLLDEA 1206 (1283)
Q Consensus 1150 ~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAll~~p--~I-LiLDEp 1206 (1283)
...+...- ........ .-+..+.+ | ..-.+.|...+.+.+-... .+ +++|-+
T Consensus 67 ~~~~~~~~-~~~~~~~~-~~~~~~~~-g--~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 67 ISLLKREM-DQTMAANA-QKNKFLID-G--FPRNQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp HHHHHHHH-HHHHHHCT-TCCEEEEE-S--CCCSHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred HHHHHHHH-CCCCHHHH-CCCCEEEC-C--CHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 67888764-12100011-24511101-1--030489999986442105543389962476
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.19 E-value=0.072 Score=26.53 Aligned_cols=22 Identities=45% Similarity=0.764 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999888999999602
Q 000789 1070 TVALVGESGSGKSTVIALIERF 1091 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl 1091 (1283)
.+||+|.+||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.17 E-value=0.057 Score=27.31 Aligned_cols=22 Identities=45% Similarity=0.561 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699983999998997299
Q 000789 406 AALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 406 ~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+.++|++||||||+.+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=91.12 E-value=0.13 Score=24.66 Aligned_cols=29 Identities=28% Similarity=0.259 Sum_probs=22.5
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 18880898999986999839999989972
Q 000789 397 SLHVPSGTTAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 397 ~l~i~~g~~~~ivG~sGsGKSTl~~~l~g 425 (1283)
++---.|.-+.++|+||+||||++..+..
T Consensus 8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 8 VLVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999999999980899998999999998
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.10 E-value=0.066 Score=26.82 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.+.++||.||||||..+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.07 E-value=0.017 Score=31.35 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
+++++|++++|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=91.04 E-value=0.084 Score=26.01 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=20.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8989999869998399999899729
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
+.=+++++|..|||||||++-+.+.
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8579999999998989999999668
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.02 E-value=0.096 Score=25.55 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=25.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09979999839999888999999602789
Q 000789 1066 PSGKTVALVGESGSGKSTVIALIERFYDP 1094 (1283)
Q Consensus 1066 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p 1094 (1283)
++|..|+|.|+-||||||++++|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.98 E-value=0.09 Score=25.79 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999988899999960278
Q 000789 1070 TVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
+|.|+|+.||||||+.+.|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999998999999999879
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=90.93 E-value=0.076 Score=26.36 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=24.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999839999888999999602789965689889
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDPDSGHVLLDN 1103 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG 1103 (1283)
.+.|+|++||||||+.+.|...+ |--.+|.
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d~ 31 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLDS 31 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf 39998999998899999999983----9987836
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.93 E-value=0.09 Score=25.76 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=20.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0898999986999839999989972999
Q 000789 401 PSGTTAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 401 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
++-..+++|||+|+||||.+--|+..+.
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9997999989999998999999999999
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.86 E-value=0.05 Score=27.77 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999888999999602
Q 000789 1070 TVALVGESGSGKSTVIALIERF 1091 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl 1091 (1283)
.|||+|++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=90.84 E-value=0.065 Score=26.85 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399998889999996027
Q 000789 1070 TVALVGESGSGKSTVIALIERFY 1092 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~ 1092 (1283)
++.|.||.||||||+.+.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.82 E-value=0.09 Score=25.77 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.81 E-value=0.094 Score=25.61 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999888999999602
Q 000789 1070 TVALVGESGSGKSTVIALIERF 1091 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl 1091 (1283)
.|+|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.81 E-value=0.19 Score=23.34 Aligned_cols=30 Identities=30% Similarity=0.557 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC-C----CCCCCCEE
Q ss_conf 999986999839999989972-9----99998669
Q 000789 405 TAALVGQSGSGKSTVISLVER-F----YDPDAGEV 434 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g-~----~~~~~G~i 434 (1283)
+++++|.+|+|||||++-+.+ . +.|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 89999999979999999997399885457664520
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=90.76 E-value=0.097 Score=25.54 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999988899999960278
Q 000789 1070 TVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
+|.|+|+.||||||+.+.|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999987999999999879
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=90.76 E-value=0.091 Score=25.75 Aligned_cols=21 Identities=43% Similarity=0.643 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
.|||+|..||||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.73 E-value=0.084 Score=26.01 Aligned_cols=32 Identities=13% Similarity=0.287 Sum_probs=27.8
Q ss_pred CEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 11888089899998699983999998997299
Q 000789 396 FSLHVPSGTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 396 i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.=+.+-+|++.+|.|++|+|||||+.-+.+..
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ECCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 12564578755686799988789999999977
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.70 E-value=0.11 Score=25.15 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9979999839999888999999602789
Q 000789 1067 SGKTVALVGESGSGKSTVIALIERFYDP 1094 (1283)
Q Consensus 1067 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p 1094 (1283)
+|..|+|-|+-||||||+++.|...+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.58 E-value=0.1 Score=25.39 Aligned_cols=22 Identities=45% Similarity=0.563 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
.++|+|..||||||..+.+...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=90.57 E-value=0.096 Score=25.55 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999888999999602
Q 000789 1070 TVALVGESGSGKSTVIALIERF 1091 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl 1091 (1283)
||.++|++|+|||||++-+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=90.54 E-value=0.097 Score=25.52 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999888999999602
Q 000789 1070 TVALVGESGSGKSTVIALIERF 1091 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl 1091 (1283)
+++|||++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=90.52 E-value=0.081 Score=26.11 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999839999989972999
Q 000789 405 TAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
+++|-||.||||+|+.+.|+..|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.50 E-value=0.1 Score=25.42 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
.++|+|+..+|||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.40 E-value=0.15 Score=24.15 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9899998699983999998997299
Q 000789 403 GTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 403 g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.-.++|.|+.|+|||||+.-+...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.39 E-value=0.11 Score=25.25 Aligned_cols=46 Identities=15% Similarity=0.412 Sum_probs=35.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCC
Q ss_conf 899998699983999998997299999866999996069989888744518882688
Q 000789 404 TTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEP 460 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~ 460 (1283)
+-+.++||+|||||-|++.|++.++. -=+..|+..+. ..|||..+.
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGGC-------------CCCCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCEEE---------ECCEEECCH
T ss_conf 64799899998899999999987389--88986255114---------111110444
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.38 E-value=0.085 Score=25.96 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=11.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699983999998997299
Q 000789 406 AALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 406 ~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+.|.||.||||||+.+.|+..|
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999799999999998
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.33 E-value=0.099 Score=25.45 Aligned_cols=36 Identities=14% Similarity=0.424 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 97999983999988899999960278996568988931
Q 000789 1068 GKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIE 1105 (1283)
Q Consensus 1068 Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~d 1105 (1283)
+.-+.++||+|+|||.|++.|.+.+.. --+.+|+-+
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~ 84 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATK 84 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCC--CHHCCCCCC
T ss_conf 866999899998888999998621322--100034433
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=90.32 E-value=0.15 Score=24.01 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399998889999996027
Q 000789 1070 TVALVGESGSGKSTVIALIERFY 1092 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~ 1092 (1283)
+++++|+.|+|||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=90.26 E-value=0.12 Score=24.91 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999839999888999999602789
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDP 1094 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p 1094 (1283)
.|+|-||.||||||+.+.|..-|..
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl 29 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQW 29 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8997799988989999999999699
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.26 E-value=0.16 Score=23.89 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=20.9
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 18880898999986999839999989972
Q 000789 397 SLHVPSGTTAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 397 ~l~i~~g~~~~ivG~sGsGKSTl~~~l~g 425 (1283)
++---.|.-+.|.|+||+||||+...+..
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999999999980899999999999998
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.24 E-value=0.14 Score=24.33 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=26.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 999983999988899999960278996568988931
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIE 1105 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~d 1105 (1283)
-+-++||.|+||||+++.|.+-+. .+-+.+++-+
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~d~ 67 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDNDT 67 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--CCEEEEECHH
T ss_conf 999889799889999999999865--1548983289
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.21 E-value=0.1 Score=25.31 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999988899999960278
Q 000789 1070 TVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
++.++|++||||||+.++|...+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 489988999988999999999849
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.18 E-value=0.13 Score=24.47 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 880898999986999839999989972
Q 000789 399 HVPSGTTAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 399 ~i~~g~~~~ivG~sGsGKSTl~~~l~g 425 (1283)
=+++|+.+.|.|++|||||||..-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.15 E-value=0.11 Score=24.97 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.13 E-value=0.13 Score=24.62 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=25.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9979999839999888999999602789
Q 000789 1067 SGKTVALVGESGSGKSTVIALIERFYDP 1094 (1283)
Q Consensus 1067 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p 1094 (1283)
+|..|+|-|.-||||||++++|...+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=90.11 E-value=0.064 Score=26.92 Aligned_cols=21 Identities=43% Similarity=0.654 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999839999888999999602
Q 000789 1071 VALVGESGSGKSTVIALIERF 1091 (1283)
Q Consensus 1071 vaIVG~SGSGKSTL~~lL~rl 1091 (1283)
|||+|++|+|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.11 E-value=0.11 Score=25.06 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8999986999839999989972999
Q 000789 404 TTAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
..+.+.||+|+||||+++++++.+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4499987999988899999999987
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.98 E-value=0.14 Score=24.35 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 850997999983999988899999960
Q 000789 1064 SIPSGKTVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1064 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
-+++|+.+-|.|++||||||+..-+.-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.97 E-value=0.13 Score=24.65 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
+++++|+.|+|||||++-+.+-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.96 E-value=0.2 Score=23.11 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869998399999899729999
Q 000789 405 TAALVGQSGSGKSTVISLVERFYDP 429 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~~~ 429 (1283)
++.++|..|+|||||++.+.+....
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999998992999999999728677
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.95 E-value=0.21 Score=22.85 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.92 E-value=0.12 Score=24.87 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999839999888999999602
Q 000789 1069 KTVALVGESGSGKSTVIALIERF 1091 (1283)
Q Consensus 1069 e~vaIVG~SGSGKSTL~~lL~rl 1091 (1283)
.|++++|++|+|||||++.|.+-
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999999999999999589
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=89.89 E-value=0.24 Score=22.53 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
++.++|..|+|||||++-+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=89.88 E-value=0.11 Score=25.14 Aligned_cols=40 Identities=33% Similarity=0.527 Sum_probs=26.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 9979999839999888999999602789965689889318
Q 000789 1067 SGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL 1106 (1283)
Q Consensus 1067 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di 1106 (1283)
++..+++|||+|+||||.+.=|...+.-..-++.+=..|.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt 44 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 44 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 9779999899999889999999999997799079998136
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.86 E-value=0.078 Score=26.26 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099799998399998889999996027
Q 000789 1066 PSGKTVALVGESGSGKSTVIALIERFY 1092 (1283)
Q Consensus 1066 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1092 (1283)
++.-|+++||++|+|||||++.|.+-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.78 E-value=0.29 Score=21.88 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=23.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999983999988899999960-----27899656
Q 000789 1070 TVALVGESGSGKSTVIALIER-----FYDPDSGH 1098 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r-----l~~p~~G~ 1098 (1283)
|++++|.+|+|||||++-+.+ -|.|+-|.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~ 37 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED 37 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 8999998997989999999709998763761331
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.78 E-value=0.27 Score=22.04 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=89.75 E-value=0.11 Score=25.17 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999869998399999899729
Q 000789 404 TTAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
=+++++|+.|+|||||++-+.+.
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79999999998999999999648
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.74 E-value=0.13 Score=24.64 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.72 E-value=0.13 Score=24.62 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
+++++|+.|+|||||++-+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.65 E-value=0.22 Score=22.71 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=25.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 8989999869998399999899729999986
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFYDPDAG 432 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G 432 (1283)
+...+.|.||.|+||||+++.++..+....+
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 8881688898999899999999999754468
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.63 E-value=0.12 Score=24.79 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.++++|...||||||++.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=89.60 E-value=0.11 Score=25.00 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999839999888999999602789
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDP 1094 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p 1094 (1283)
.+.|.|++||||||+++.|...+.-
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999898998989999999999987
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.60 E-value=0.13 Score=24.43 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
.+||||..-+|||||++.|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=89.60 E-value=0.13 Score=24.50 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|++|+|||||++-+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.60 E-value=0.13 Score=24.64 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
+++++|++|+|||||++-+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=89.56 E-value=0.13 Score=24.52 Aligned_cols=24 Identities=42% Similarity=0.671 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699983999998997299
Q 000789 404 TTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
=.+.|+||.||||||+.+.|+..|
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 169998899998799999999997
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.52 E-value=0.13 Score=24.61 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999839999888999999602789
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDP 1094 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p 1094 (1283)
++.|+|+.||||||..+.|..-|..
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~ 26 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGI 26 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8999879999989999999998699
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.49 E-value=0.15 Score=23.97 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89899998699983999998997299
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.+..+.|.||.|+|||||++-++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.48 E-value=0.28 Score=21.97 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.44 E-value=0.25 Score=22.36 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=19.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999869998399999899729
Q 000789 404 TTAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
=+++++|.+|+|||||++-+.+.
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.40 E-value=0.15 Score=24.08 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=29.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCHHH
Q ss_conf 99998399998889999996027899656898893189999278750328881577777121
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNET 1131 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~Lf~gT 1131 (1283)
.|||.|+.|||||||...|.....-.. .....+.+++.|.+.....
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~----------------~~~~~v~~iS~DdfY~t~~ 74 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKY----------------GGEKSIGYASIDDFYLTHE 74 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHH----------------GGGSCEEEEEGGGGBCCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHH----------------CCCCCEEEECCCCCCCCHH
T ss_conf 998379987889999999999999872----------------7786067635677778889
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.39 E-value=0.14 Score=24.29 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.+++||.-.||||||++.|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=89.23 E-value=0.099 Score=25.47 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998699983999998997299999
Q 000789 405 TAALVGQSGSGKSTVISLVERFYDPD 430 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~~~~ 430 (1283)
.+.+.||+|+||||++++++..+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 48987999973889999998503888
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.23 E-value=0.19 Score=23.21 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=24.1
Q ss_pred CCCCCEE-EEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 5312118-8808989999869998399999899
Q 000789 392 IFAGFSL-HVPSGTTAALVGQSGSGKSTVISLV 423 (1283)
Q Consensus 392 ~l~~i~l-~i~~g~~~~ivG~sGsGKSTl~~~l 423 (1283)
-|+++-- -+++|+.+.|.|++|+|||+|+.-+
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 798855689969839999947999999999999
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.19 E-value=0.16 Score=23.89 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999839999989972999
Q 000789 405 TAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
+++++|.+|+|||||++-+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.19 E-value=0.16 Score=23.88 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999988899999960278
Q 000789 1070 TVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
++.|.|+.||||||+.+.|..-|.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999997999999999989
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.15 E-value=0.32 Score=21.54 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
++.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.09 E-value=0.39 Score=20.79 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=28.0
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 98889827877899998999999999870898399980482134
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTI 575 (1283)
Q Consensus 532 ~~illLDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 575 (1283)
..++++||.- .+.......+...+....+....+++++....+
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHH
T ss_conf 1899996632-000237899998863112002320126708775
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.02 E-value=0.16 Score=23.77 Aligned_cols=22 Identities=50% Similarity=0.611 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999888999999602
Q 000789 1070 TVALVGESGSGKSTVIALIERF 1091 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl 1091 (1283)
.|||+|..||||||..+.|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.02 E-value=0.19 Score=23.24 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999839999888999999602789
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDP 1094 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p 1094 (1283)
.+-+.||+|+||||+++++++-+..
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 4999879999888999999999875
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.01 E-value=0.19 Score=23.32 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|++++|++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.99 E-value=0.15 Score=24.09 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
+++++|.+|+|||||++-+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.99 E-value=0.2 Score=23.09 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=14.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089899998699983999998997299
Q 000789 401 PSGTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 401 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+||..+++.|+-||||||+.+.+++-+
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 998299996687765889999987642
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.98 E-value=0.17 Score=23.60 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=22.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 8089899998699983999998997
Q 000789 400 VPSGTTAALVGQSGSGKSTVISLVE 424 (1283)
Q Consensus 400 i~~g~~~~ivG~sGsGKSTl~~~l~ 424 (1283)
+++|+.+.|.|++|||||||..-++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 5588799998589898899999999
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.98 E-value=0.16 Score=23.87 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
+++++|.+|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.93 E-value=0.16 Score=23.83 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=29.7
Q ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCEEEECCCCCCCCCHHHHHCCCE
Q ss_conf 99998699983999998997---299999866999996069989888744518
Q 000789 405 TAALVGQSGSGKSTVISLVE---RFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~---g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~ 454 (1283)
-++|+|+.|||||||+..|+ |..+ ..|++. +|..+.+..+.+..+.++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~s 58 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGIT 58 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC-CCCCEE-CCCEEEECCHHHHHCCCC
T ss_conf 999995898998999999999648534-023365-184698565888751886
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=88.91 E-value=0.21 Score=22.95 Aligned_cols=33 Identities=30% Similarity=0.357 Sum_probs=26.8
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4322158850997999983999988899999960
Q 000789 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1057 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
.++...+.+ .|.-+.|.|+||+||||++..|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.89 E-value=0.34 Score=21.32 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999869998399999899729
Q 000789 404 TTAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
=+++|||-.-+|||||++.|.+-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.84 E-value=0.16 Score=23.76 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=23.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 880898999986999839999989972
Q 000789 399 HVPSGTTAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 399 ~i~~g~~~~ivG~sGsGKSTl~~~l~g 425 (1283)
=+++|+.+.|.|++|||||++..-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.83 E-value=0.21 Score=22.96 Aligned_cols=161 Identities=16% Similarity=0.146 Sum_probs=73.3
Q ss_pred CCCCEEE-EECCCCEEEEECCCCCCHHHHHHH-HHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCHHHHHH
Q ss_conf 4322158-850997999983999988899999-96027899656898893189999278750328881577777121999
Q 000789 1057 IFRNLCL-SIPSGKTVALVGESGSGKSTVIAL-IERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRT 1134 (1283)
Q Consensus 1057 vL~~isl-~I~~Ge~vaIVG~SGSGKSTL~~l-L~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~Lf~gTIre 1134 (1283)
-|+++-- -+++|+.+-|.|++|+|||+++.- +..........+.+ +.-|.. ...++.
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~-------------------~s~e~~--~~~~~~ 72 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF-------------------VTFEET--PQDIIK 72 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEE-------------------EESSSC--HHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC-------------------CCCCCC--HHHHHH
T ss_conf 79885568996983999994799999999999999999856887420-------------------126679--999999
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHC--CCCCEEEEECCCCCCC
Q ss_conf 972489999999999999998072899983998765423799998994699-9999999971--5998889726667999
Q 000789 1135 NIAYGKQGGATEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQK-QRIAIARAVL--KNPKILLLDEATSALD 1211 (1283)
Q Consensus 1135 Nl~~~~~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQr-QRialARAll--~~p~ILiLDEpTSaLD 1211 (1283)
...-. ....++.....+.. .. ......+.-...+.... ..+.-.+..+ .+|+++++|--++-.+
T Consensus 73 ~~~~~---~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~ 139 (242)
T d1tf7a1 73 NARSF---GWDLAKLVDEGKLF----IL------DASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQ 139 (242)
T ss_dssp HHGGG---TCCHHHHHHTTSEE----EE------ECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTST
T ss_pred HHHHC---CCCHHHHHHHCCHH----HH------HHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99984---99848988714302----44------4210335444430245899999999998863122200207889987
Q ss_pred HHH----HHHHHHHHHHH--CCCCEEEEEECCCH---------HHH-HCCEEEEEE
Q ss_conf 798----99999999987--29964999804914---------776-139899995
Q 000789 1212 AES----ERVVQDALERV--MVNRTTVVVAHRLT---------TIK-NADIIAVVK 1251 (1283)
Q Consensus 1212 ~~t----e~~I~~~l~~~--~~~~TvI~IaHrl~---------ti~-~~DrIivl~ 1251 (1283)
... .......+.+. ..++|+++++|... ... .+|.++.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 140 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 60572678999999999998639716884210255422246762335362999988
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.81 E-value=0.18 Score=23.45 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 808989999869998399999899729
Q 000789 400 VPSGTTAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 400 i~~g~~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
+++|+.+.|.|++|+|||+++.-++-.
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 628859999917999989999999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.79 E-value=0.18 Score=23.42 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=24.3
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 850997999983999988899999960
Q 000789 1064 SIPSGKTVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1064 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
-|++|+.+-|.|++|||||++..-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.76 E-value=0.16 Score=23.75 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
+++++|++|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.75 E-value=0.16 Score=23.89 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.73 E-value=0.16 Score=23.73 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999839999989972999
Q 000789 405 TAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.72 E-value=0.061 Score=27.06 Aligned_cols=39 Identities=21% Similarity=0.424 Sum_probs=27.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCC
Q ss_conf 9999839999888999999602789965689889318999927875032888157777
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVL 1127 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~L 1127 (1283)
.|||.|.|||||||+.+.|...+... | -...+++||.+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~------------------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G------------------VKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T------------------CCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C------------------CCEEEEECCCCC
T ss_conf 99998999780999999999997156-9------------------976999477787
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.65 E-value=0.17 Score=23.54 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999839999888999999602
Q 000789 1069 KTVALVGESGSGKSTVIALIERF 1091 (1283)
Q Consensus 1069 e~vaIVG~SGSGKSTL~~lL~rl 1091 (1283)
..|+|+|+.|+|||||++.|.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.63 E-value=0.35 Score=21.24 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999983999988899999960-----27899656
Q 000789 1070 TVALVGESGSGKSTVIALIER-----FYDPDSGH 1098 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r-----l~~p~~G~ 1098 (1283)
|+.++|.+|+|||||++-+.. -|.|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999999997999999999739988545766452
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=88.58 E-value=0.18 Score=23.36 Aligned_cols=112 Identities=21% Similarity=0.242 Sum_probs=56.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHH
Q ss_conf 97999983999988899999960278996568988931899992787503288815777771219999724899999999
Q 000789 1068 GKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGATEE 1147 (1283)
Q Consensus 1068 Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~~~~~~~sd~ 1147 (1283)
.=++.|+|+-||||||+.+.|..-|. -..|+-- +-+|+.+ ++..-+...+.+.+.-+. ..+++
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~g----~~~is~g-------dllr~~~----~~~~~~~~~~~~~~~~~~--~v~~~ 68 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHFE----LKHLSSG-------DLLRDNM----LRGTEIGVLAKTFIDQGK--LIPDD 68 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHBC----CEEEEHH-------HHHHHHH----HTTCHHHHHHHHHHHTTC--CCCHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC----CEEECHH-------HHHHHHH----HHHHHHHHHHHHHHHHHH--HCCCH
T ss_conf 21699988999987999999999979----8687189-------9999998----740156689998763664--13303
Q ss_pred HHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 999999980728999839987654237999989946999999999971599888972666
Q 000789 1148 EIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEAT 1207 (1283)
Q Consensus 1148 ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAll~~p~ILiLDEpT 1207 (1283)
.+....+.. +... ......++ | .-.-..|.-.+.+ .+....++.||-|-
T Consensus 69 ~~~~l~~~~-----~~~~-~~~~~ild--G--fPr~~~q~~~l~~-~~~~~~vi~L~v~~ 117 (189)
T d2ak3a1 69 VMTRLVLHE-----LKNL-TQYNWLLD--G--FPRTLPQAEALDR-AYQIDTVINLNVPF 117 (189)
T ss_dssp HHHHHHHHH-----HHHH-TTSCEEEE--S--CCCSHHHHHHHHT-TCCCCEEEEEECCH
T ss_pred HHHHHHHHH-----HHHH-HHCCCCCC--C--CCCHHHHHHHHHH-CCCCEEEEEEECCC
T ss_conf 445445554-----4212-10584244--5--2100067887631-57532999972441
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.57 E-value=0.21 Score=22.91 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=25.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8989999869998399999899729999986699999
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDG 438 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g 438 (1283)
|...+.++||+|+|||.|++.|+..+.. .-+.+|.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d~ 85 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDM 85 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEG
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCC--CEEEECC
T ss_conf 7658999778750069999999863367--7067415
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.53 E-value=0.17 Score=23.57 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|.+|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=88.51 E-value=0.079 Score=26.23 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9799998399998889999996027
Q 000789 1068 GKTVALVGESGSGKSTVIALIERFY 1092 (1283)
Q Consensus 1068 Ge~vaIVG~SGSGKSTL~~lL~rl~ 1092 (1283)
.-+|+|+|++++|||||++.|.+-.
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=88.50 E-value=0.16 Score=23.93 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399998889999996027
Q 000789 1070 TVALVGESGSGKSTVIALIERFY 1092 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~ 1092 (1283)
.|||+|+.++|||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=88.35 E-value=0.18 Score=23.42 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=22.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 999839999888999999602789965689889318
Q 000789 1071 VALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL 1106 (1283)
Q Consensus 1071 vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di 1106 (1283)
+-+.||.|+||||+++++..-+.... +.+++.+.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~~--~~~~~~~~ 71 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTNI--HVTSGPVL 71 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCE--EEEETTTC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC--CCCCCCCC
T ss_conf 89879999738899999985038885--33257442
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.33 E-value=0.17 Score=23.55 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+++|||...+|||||++.|.+--
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 79997899998999999997789
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.32 E-value=0.2 Score=23.10 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 85099799998399998889999996
Q 000789 1064 SIPSGKTVALVGESGSGKSTVIALIE 1089 (1283)
Q Consensus 1064 ~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1089 (1283)
-+++|+.+-|.|++||||||+..-++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=88.27 E-value=0.19 Score=23.23 Aligned_cols=175 Identities=20% Similarity=0.189 Sum_probs=84.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCC-CHHHHHHHH--HCCCCCCC
Q ss_conf 999983999988899999960278--9965689889318999927875032888157777-712199997--24899999
Q 000789 1070 TVALVGESGSGKSTVIALIERFYD--PDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVL-FNETIRTNI--AYGKQGGA 1144 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~L-f~gTIreNl--~~~~~~~~ 1144 (1283)
.+||+|+.|+|||||+..|+..-. ...|++. +|..+.++...+..+.+++-+.-..+ +++ .+-|+ ++|.. +.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iDtPGh~-dF 80 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAPGYG-DF 80 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECCCSG-GG
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCC-CCEEEECCCCHH-HH
T ss_conf 999994889809999999999709755306622-221135626988873876875102222343-210688068155-43
Q ss_pred CHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHH
Q ss_conf 99999999998072899983998765423799998994699999999997159988897---266679997989999999
Q 000789 1145 TEEEIIAATEASNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLL---DEATSALDAESERVVQDA 1221 (1283)
Q Consensus 1145 sd~ei~~al~~a~l~~~i~~lp~Gldt~ige~G~~LSGGQrQRialARAll~~p~ILiL---DEpTSaLD~~te~~I~~~ 1221 (1283)
. .+...++..+...= -.|+ .......+=++-+-.|+.. +.|.++++ |.+ + |.. ..+ +.
T Consensus 81 ~-~e~~~al~~~D~av----------lvvd-a~~Gv~~~t~~~~~~~~~~-~~p~~i~iNk~D~~--~-~~~--~~l-~~ 141 (267)
T d2dy1a2 81 V-GEIRGALEAADAAL----------VAVS-AEAGVQVGTERAWTVAERL-GLPRMVVVTKLDKG--G-DYY--ALL-ED 141 (267)
T ss_dssp H-HHHHHHHHHCSEEE----------EEEE-TTTCSCHHHHHHHHHHHHT-TCCEEEEEECGGGC--C-CHH--HHH-HH
T ss_pred H-HHHHHHHCCCCCEE----------EEEE-CCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCC--C-CCH--HHH-HH
T ss_conf 3-55654312467338----------9842-3577421157887765540-44310133320222--2-101--234-46
Q ss_pred HHHHCCCCEEEEEECCC----HH-HH-HCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99872996499980491----47-76-139899995988988059678971
Q 000789 1222 LERVMVNRTTVVVAHRL----TT-IK-NADIIAVVKNGVIAEQGSHDALMK 1266 (1283)
Q Consensus 1222 l~~~~~~~TvI~IaHrl----~t-i~-~~DrIivl~~G~Ive~Gt~~eLl~ 1266 (1283)
+++.+....-+.+-... .. +. ...+.+..++|.-.+.--|.++.+
T Consensus 142 ~~~~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~ 192 (267)
T d2dy1a2 142 LRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERE 192 (267)
T ss_dssp HHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHH
T ss_pred HHHHHCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHHH
T ss_conf 888746586768600258832687624765489961898745407777899
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.23 E-value=0.21 Score=22.94 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 850997999983999988899999960
Q 000789 1064 SIPSGKTVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1064 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
-+++|+.+-|.|++|+||||+..-+.-
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 862885999991799998999999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.19 E-value=0.21 Score=22.93 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=22.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0997999983999988899999960278
Q 000789 1066 PSGKTVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1066 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
..+..+.|.|+.|+|||||++-+++-..
T Consensus 27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 27 LRAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp TCSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0598799986999829999999999779
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=88.16 E-value=0.18 Score=23.38 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=22.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09979999839999888999999602
Q 000789 1066 PSGKTVALVGESGSGKSTVIALIERF 1091 (1283)
Q Consensus 1066 ~~Ge~vaIVG~SGSGKSTL~~lL~rl 1091 (1283)
++.=++.+||..|||||||++-|.+-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.12 E-value=0.36 Score=21.08 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
++.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.04 E-value=0.18 Score=23.51 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.+.+.||+|+||||++++++..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69997899974879999999998
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.98 E-value=0.16 Score=23.81 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.+.+.||.||||||+.+.|+..|
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=87.93 E-value=0.17 Score=23.71 Aligned_cols=10 Identities=30% Similarity=0.561 Sum_probs=4.5
Q ss_pred CCCEEEEECC
Q ss_conf 9988898278
Q 000789 531 NPKILLLDEA 540 (1283)
Q Consensus 531 ~~~illLDE~ 540 (1283)
+..+..+||.
T Consensus 249 ~~~~~~~dei 258 (443)
T d1g41a_ 249 QNGIVFIDEI 258 (443)
T ss_dssp HHCEEEEETG
T ss_pred CCCCCCCCHH
T ss_conf 2675554223
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.88 E-value=0.21 Score=22.98 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHH-CCC
Q ss_conf 99998699983999998997-299
Q 000789 405 TAALVGQSGSGKSTVISLVE-RFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~-g~~ 427 (1283)
+++++|..|+|||||++-+. +.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~ 27 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRF 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999999298999999973999
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=87.80 E-value=0.16 Score=23.93 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=32.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCCC
Q ss_conf 88089899998699983999998997299999866-9999960
Q 000789 399 HVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE-VLIDGID 440 (1283)
Q Consensus 399 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~-i~i~g~~ 440 (1283)
=+++|..+-+.|++||||||+..-++.......|. +++|.+.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=87.80 E-value=0.25 Score=22.29 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=24.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 979999839999888999999602789965
Q 000789 1068 GKTVALVGESGSGKSTVIALIERFYDPDSG 1097 (1283)
Q Consensus 1068 Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G 1097 (1283)
...+.|.||.|+||||+++.+.+.+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.79 E-value=0.19 Score=23.27 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=28.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 998889726667999798999999999872996499980491477
Q 000789 1197 NPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTI 1241 (1283)
Q Consensus 1197 ~p~ILiLDEpTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1241 (1283)
+..++++||.- .+.......+...+......+..|.++++.+.+
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i 152 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 152 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CCEEEEEHHHH-HCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHC
T ss_conf 72288614344-312147898764112477644788614876656
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.78 E-value=0.2 Score=23.04 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.76 E-value=0.3 Score=21.77 Aligned_cols=28 Identities=36% Similarity=0.466 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHH--HCCCCCCCC
Q ss_conf 9999869998399999899--729999986
Q 000789 405 TAALVGQSGSGKSTVISLV--ERFYDPDAG 432 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l--~g~~~~~~G 432 (1283)
++.++|.+|+|||||++-+ ...+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.75 E-value=0.2 Score=23.10 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999869998399999899729
Q 000789 404 TTAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
.++.++|.+|+|||||++-+.+-
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998993889999999719
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=87.64 E-value=0.18 Score=23.37 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHH-HCCCCCCCCEEEEC
Q ss_conf 89999869998399999899-72999998669999
Q 000789 404 TTAALVGQSGSGKSTVISLV-ERFYDPDAGEVLID 437 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l-~g~~~~~~G~i~i~ 437 (1283)
..+.|+|++|||||++++.+ ...+....+-|.+|
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 65899907999689999999999984799889996
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=87.63 E-value=0.12 Score=24.73 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=21.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09979999839999888999999602789
Q 000789 1066 PSGKTVALVGESGSGKSTVIALIERFYDP 1094 (1283)
Q Consensus 1066 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p 1094 (1283)
++-..+++|||+|+||||.+.=|...+.-
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~ 35 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQ 35 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99979999899999989999999999997
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=87.63 E-value=0.36 Score=21.15 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=24.1
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4322158850997999983999988899999960
Q 000789 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1057 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
.++..-+ --.|.-+.|+|+||+||||++..|..
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 2899999-99999999980899998999999998
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=87.63 E-value=0.41 Score=20.65 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=25.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99998699983999998997299999866999
Q 000789 405 TAALVGQSGSGKSTVISLVERFYDPDAGEVLI 436 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i 436 (1283)
++.|-|+-|+||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99998886678999999999986569976998
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.62 E-value=0.23 Score=22.61 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=24.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999839999888999999602789965689889
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDPDSGHVLLDN 1103 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG 1103 (1283)
++.|.|+-||||||+.+.|..-| |-..++.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~~ 33 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLAT 33 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf 99998999999899999999996----9945834
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.60 E-value=0.21 Score=22.85 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
+++++|.+|+|||||++-+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.57 E-value=0.21 Score=22.96 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|+.|+|||||++-+.+
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=87.55 E-value=0.2 Score=23.08 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 8999986999839999989972999998669999
Q 000789 404 TTAALVGQSGSGKSTVISLVERFYDPDAGEVLID 437 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~ 437 (1283)
..++|+|+-||||||+.+.|...+ |-..++
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf 899997999988999999999868----985980
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=87.55 E-value=0.23 Score=22.66 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=28.0
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 85099799998399998889999996027899
Q 000789 1064 SIPSGKTVALVGESGSGKSTVIALIERFYDPD 1095 (1283)
Q Consensus 1064 ~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~ 1095 (1283)
..+||..+.+.|+=||||||+++.+.+-+-..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 57998299996687765889999987642234
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.51 E-value=0.2 Score=23.15 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699983999998997299
Q 000789 406 AALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 406 ~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+.+.||+|+||||+++.+++.+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.46 E-value=0.28 Score=21.91 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=26.7
Q ss_pred CEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 1188808989999869998399999899729
Q 000789 396 FSLHVPSGTTAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 396 i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
.-+.+-+|++.+|.|++|+|||+|+.-+...
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EECCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 0256367887776679998989999999998
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.40 E-value=0.44 Score=20.44 Aligned_cols=24 Identities=42% Similarity=0.653 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999988899999960278
Q 000789 1070 TVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
|+.++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.36 E-value=0.22 Score=22.81 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.30 E-value=0.19 Score=23.17 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89899998699983999998997299
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
|=..++|+|+.++|||||++.|.|..
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 87999988999997999999980998
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=87.25 E-value=0.23 Score=22.64 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=33.2
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCCC
Q ss_conf 885099799998399998889999996027899656-8988931
Q 000789 1063 LSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH-VLLDNIE 1105 (1283)
Q Consensus 1063 l~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~-I~idG~d 1105 (1283)
=-|++|..+-|.|++|||||||..-++.-..-..|. ++||...
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 99667358998057774789999999999870898799986544
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.23 E-value=0.23 Score=22.58 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|..|+|||||++-+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.20 E-value=0.38 Score=20.96 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=14.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999869998399999899729999986
Q 000789 405 TAALVGQSGSGKSTVISLVERFYDPDAG 432 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G 432 (1283)
++.++|..|+|||||++-+.....|+.|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 9999999998889999988408979724
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=87.18 E-value=0.13 Score=24.55 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=18.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 98999986999839999989972
Q 000789 403 GTTAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 403 g~~~~ivG~sGsGKSTl~~~l~g 425 (1283)
.=+++++|++|+|||||++-+.+
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHC
T ss_conf 68999999999988999988733
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.16 E-value=0.23 Score=22.59 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|+.++|.+|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.12 E-value=0.24 Score=22.46 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.01 E-value=0.24 Score=22.42 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.92 E-value=0.52 Score=19.83 Aligned_cols=28 Identities=32% Similarity=0.567 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999983999988899999960-----2789965
Q 000789 1070 TVALVGESGSGKSTVIALIER-----FYDPDSG 1097 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r-----l~~p~~G 1097 (1283)
|+.+||.+|+|||||++-+.. -|+|+-|
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~ 36 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 36 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 999999899789999999973989876377310
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=86.88 E-value=0.3 Score=21.75 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
.++++|...+|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=86.82 E-value=0.25 Score=22.35 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999888999999602
Q 000789 1070 TVALVGESGSGKSTVIALIERF 1091 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl 1091 (1283)
.|||+|+.++|||||++.|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.82 E-value=0.27 Score=22.13 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999839999888999999602789
Q 000789 1070 TVALVGESGSGKSTVIALIERFYDP 1094 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~p 1094 (1283)
.|+|-|.-||||||+++.|...+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.77 E-value=0.26 Score=22.23 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 69999999999715998--8897266679997989999999998729964999804
Q 000789 1183 GQKQRIAIARAVLKNPK--ILLLDEATSALDAESERVVQDALERVMVNRTTVVVAH 1236 (1283)
Q Consensus 1183 GQrQRialARAll~~p~--ILiLDEpTSaLD~~te~~I~~~l~~~~~~~TvI~IaH 1236 (1283)
.+.+...+++..++++. |+....++..........+.+.+.. ...+|++++++
T Consensus 153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~-~~~r~i~Vitk 207 (306)
T d1jwyb_ 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-EGKRTIGVITK 207 (306)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-SCSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCC-CCCEEEEEEEC
T ss_conf 89999999999982777516876325631003499999997386-78858999820
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.74 E-value=0.23 Score=22.67 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998399998889999996027
Q 000789 1071 VALVGESGSGKSTVIALIERFY 1092 (1283)
Q Consensus 1071 vaIVG~SGSGKSTL~~lL~rl~ 1092 (1283)
+-+.||+|+||||+++++++-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.69 E-value=0.26 Score=22.19 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
||+++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.62 E-value=0.26 Score=22.16 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|..|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=86.49 E-value=0.55 Score=19.67 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999983999988899999960-----27899656
Q 000789 1070 TVALVGESGSGKSTVIALIER-----FYDPDSGH 1098 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r-----l~~p~~G~ 1098 (1283)
|+.++|..|+|||||++-+.. -|.|+.|.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~ 39 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 39 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 9999998995889999999729998654775343
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.46 E-value=0.51 Score=19.90 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|+.++|++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.44 E-value=0.35 Score=21.16 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHH-HCCCCCCCC
Q ss_conf 89999869998399999899-729999986
Q 000789 404 TTAALVGQSGSGKSTVISLV-ERFYDPDAG 432 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l-~g~~~~~~G 432 (1283)
-++.++|.+|+|||||++-+ .+.+.|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 779999899998899999895098278888
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=86.42 E-value=0.18 Score=23.49 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999839999989972999
Q 000789 405 TAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
.+.+.||+|+||||+++++++.+.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 389889799878889999999849
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.39 E-value=0.27 Score=22.01 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHH-HCCC
Q ss_conf 9999869998399999899-7299
Q 000789 405 TAALVGQSGSGKSTVISLV-ERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l-~g~~ 427 (1283)
+++++|+.|+|||||++-+ .+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~~~ 31 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDGAF 31 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999999299999999971998
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.38 E-value=0.26 Score=22.21 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 89999869998399999899729999
Q 000789 404 TTAALVGQSGSGKSTVISLVERFYDP 429 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~~~ 429 (1283)
++++|-|.-||||||+++.|...+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.37 E-value=0.27 Score=22.06 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|.+|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.30 E-value=0.41 Score=20.69 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|++++|.+|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.29 E-value=0.31 Score=21.61 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|++++|..|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.25 E-value=0.26 Score=22.20 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399998889999996027
Q 000789 1070 TVALVGESGSGKSTVIALIERFY 1092 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~ 1092 (1283)
.+++||...||||||++.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.22 E-value=0.38 Score=20.89 Aligned_cols=21 Identities=43% Similarity=0.784 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|++++|+.|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.13 E-value=0.29 Score=21.81 Aligned_cols=30 Identities=33% Similarity=0.376 Sum_probs=23.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 7999983999988899999960278996568988
Q 000789 1069 KTVALVGESGSGKSTVIALIERFYDPDSGHVLLD 1102 (1283)
Q Consensus 1069 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~id 1102 (1283)
..|||+|.-||||||..+.|..-+ |-..+|
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf 899997999988999999999868----985980
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.09 E-value=0.57 Score=19.52 Aligned_cols=28 Identities=25% Similarity=0.494 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999983999988899999960-----2789965
Q 000789 1070 TVALVGESGSGKSTVIALIER-----FYDPDSG 1097 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r-----l~~p~~G 1097 (1283)
||+++|..|+|||||++-+.. -|+|+.|
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~ 34 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 34 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 899999899098999999984999876366223
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.05 E-value=0.28 Score=21.94 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9899998699983999998997299
Q 000789 403 GTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 403 g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
..-+.+.||+|+|||++++.+++..
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 8646876699888308999999874
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.99 E-value=0.39 Score=20.81 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999983999988899999960-----2789965
Q 000789 1070 TVALVGESGSGKSTVIALIER-----FYDPDSG 1097 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r-----l~~p~~G 1097 (1283)
|++++|.+|+|||||++-+.+ -|+|+.|
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~ 37 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE 37 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999799899999999980988986577410
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.84 E-value=0.16 Score=23.77 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.82 E-value=0.31 Score=21.65 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998399999899729
Q 000789 405 TAALVGQSGSGKSTVISLVERF 426 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~ 426 (1283)
.++++|+.++|||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=85.72 E-value=0.31 Score=21.65 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
++.++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=85.70 E-value=0.25 Score=22.32 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699983999998997299
Q 000789 404 TTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
..+.+.||+|||||++++.+++..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 079988969998899999986201
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=85.60 E-value=0.5 Score=20.00 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=25.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEECC
Q ss_conf 98999986999839999989972999-9986699999
Q 000789 403 GTTAALVGQSGSGKSTVISLVERFYD-PDAGEVLIDG 438 (1283)
Q Consensus 403 g~~~~ivG~sGsGKSTl~~~l~g~~~-~~~G~i~i~g 438 (1283)
.....++||+|+|||.+++.|+..+- ....-+.+|.
T Consensus 53 ~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~ 89 (315)
T d1qvra3 53 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 89 (315)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 6699997888624899999999983588753488731
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=85.57 E-value=0.44 Score=20.39 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 322158850997999983999988899999960
Q 000789 1058 FRNLCLSIPSGKTVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1058 L~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
++. ++---.|.-+.|+|+||+||||+...|.+
T Consensus 6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEE-EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 889-99999999999980899999999999998
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=85.56 E-value=0.25 Score=22.34 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=26.2
Q ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2158850997999983999988899999960278
Q 000789 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1060 ~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
|.=+.|-+||+.+|+|++|+|||||+..+.+-..
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4125645787556867999887899999999775
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=85.55 E-value=0.26 Score=22.19 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
++++||+.|+|||||++-+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999899999999964
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.49 E-value=0.41 Score=20.70 Aligned_cols=37 Identities=24% Similarity=0.466 Sum_probs=26.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCCC
Q ss_conf 7999983999988899999960-----27899656-----8988931
Q 000789 1069 KTVALVGESGSGKSTVIALIER-----FYDPDSGH-----VLLDNIE 1105 (1283)
Q Consensus 1069 e~vaIVG~SGSGKSTL~~lL~r-----l~~p~~G~-----I~idG~d 1105 (1283)
-||+++|.+|+|||||++.+.. -|.|+.|. +.+||.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 51 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQE 51 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEE
T ss_conf 38999998992989999999719888544754211310388317679
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.46 E-value=0.36 Score=21.12 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999988899999960278
Q 000789 1070 TVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
|++++|.+|+|||||++-+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.38 E-value=0.18 Score=23.43 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|++|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.26 E-value=0.63 Score=19.24 Aligned_cols=29 Identities=31% Similarity=0.528 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999983999988899999960-----27899656
Q 000789 1070 TVALVGESGSGKSTVIALIER-----FYDPDSGH 1098 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r-----l~~p~~G~ 1098 (1283)
|+.++|.+|+|||||++-+.. -|+|+.|.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~ 39 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIED 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 9999998995989999999709888545763120
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=85.07 E-value=0.32 Score=21.53 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=11.5
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 998399998889999996027
Q 000789 1072 ALVGESGSGKSTVIALIERFY 1092 (1283)
Q Consensus 1072 aIVG~SGSGKSTL~~lL~rl~ 1092 (1283)
-+.||.|+||||+++++.+-+
T Consensus 39 Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 39 LLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 988979987888999999984
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.05 E-value=0.64 Score=19.17 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=29.7
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 98889827877899998999999999870898399980482134
Q 000789 532 PKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTI 575 (1283)
Q Consensus 532 ~~illLDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 575 (1283)
.+++++||+=. |+......+.+.+.+-......|++|++++-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 87999978110-89999999999985689886999973885636
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.97 E-value=0.35 Score=21.15 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|.+|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999899899999999970
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.96 E-value=0.35 Score=21.19 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|+.+||.+|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999399999999962
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.93 E-value=0.073 Score=26.48 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999888999999602
Q 000789 1070 TVALVGESGSGKSTVIALIERF 1091 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl 1091 (1283)
+|+++|++|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.91 E-value=0.36 Score=21.10 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|+.+||.+|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.86 E-value=0.35 Score=21.23 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999839999989972
Q 000789 405 TAALVGQSGSGKSTVISLVER 425 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g 425 (1283)
+++++|.+|+|||||++-+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999699999999971
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=84.77 E-value=0.4 Score=20.72 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=25.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9999869998399999899729999986699
Q 000789 405 TAALVGQSGSGKSTVISLVERFYDPDAGEVL 435 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~ 435 (1283)
++.|-|+-||||||+++.|...+......+.
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~ 37 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRIL 37 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 9999888778899999999998734688569
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=84.75 E-value=0.24 Score=22.49 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=29.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE-ECCCC
Q ss_conf 8808989999869998399999899729999986699-99960
Q 000789 399 HVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVL-IDGID 440 (1283)
Q Consensus 399 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~-i~g~~ 440 (1283)
.++++..+.+.||.|+|||++.+.+++++. |.+. +++.+
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~ 189 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPL 189 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEECCC
T ss_conf 899767699989999888999999999859---9789997742
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=84.71 E-value=0.6 Score=19.35 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=24.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 99986999839999989972999998669999960
Q 000789 406 AALVGQSGSGKSTVISLVERFYDPDAGEVLIDGID 440 (1283)
Q Consensus 406 ~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~i~g~~ 440 (1283)
+..+||||+|||-+++.|+..++ ..-+.+|-..
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~--~~~ir~D~s~ 103 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLD--IPIAISDATS 103 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CCEEEHHHHH
T ss_conf 24418998637899999986443--5331112220
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=84.64 E-value=0.31 Score=21.61 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=18.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799998399998889999996027
Q 000789 1069 KTVALVGESGSGKSTVIALIERFY 1092 (1283)
Q Consensus 1069 e~vaIVG~SGSGKSTL~~lL~rl~ 1092 (1283)
..+-+.||.|+|||++++.+.+-.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 079988969998899999986201
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.47 E-value=0.67 Score=18.98 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|+++||.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.39 E-value=0.49 Score=20.09 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|+.++|.+|+|||||++-+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.22 E-value=0.36 Score=21.14 Aligned_cols=21 Identities=24% Similarity=0.634 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|+.++|..|+|||||++-+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.16 E-value=0.36 Score=21.13 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=26.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 998889827877899998999999999870898399980482134
Q 000789 531 NPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTI 575 (1283)
Q Consensus 531 ~~~illLDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 575 (1283)
+..++++||.-..-+ .....+...+.........+++++..+.+
T Consensus 101 ~~kviiiDe~d~~~~-~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADSMTA-GAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGGSCH-HHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CEEEEEEECCCCCCH-HHHHHHHHHCCCCCCCEEEEECCCCHHHH
T ss_conf 359999824432321-57787752011233333665314743021
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.12 E-value=0.51 Score=19.93 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=8.3
Q ss_pred HHHHCCCCEEEEECCCCCC
Q ss_conf 8870199888982787789
Q 000789 526 RAILKNPKILLLDEATSAL 544 (1283)
Q Consensus 526 Ral~~~~~illLDE~ts~l 544 (1283)
.|-...|.|+++||.=+-.
T Consensus 92 ~A~~~~p~il~iDeid~l~ 110 (258)
T d1e32a2 92 EAEKNAPAIIFIDELDAIA 110 (258)
T ss_dssp HHHHTCSEEEEESSGGGTC
T ss_pred HHHHCCCEEEEEHHHHHHC
T ss_conf 9986499499852111322
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=83.99 E-value=0.49 Score=20.06 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999988899999960278
Q 000789 1070 TVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
.+||+|+-.+|||||++.|++...
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999993458849999999970344
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=83.98 E-value=0.41 Score=20.64 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=31.1
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCCCC
Q ss_conf 85099799998399998889999996027899656-89889318
Q 000789 1064 SIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH-VLLDNIEL 1106 (1283)
Q Consensus 1064 ~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~-I~idG~di 1106 (1283)
.++++..+.++||.|+|||++.+.|.++.. |. |.+++-+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~ 190 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLD 190 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEECCCH
T ss_conf 899767699989999888999999999859---97899977420
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=83.94 E-value=0.38 Score=20.92 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=28.4
Q ss_pred CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 531211888089899998699983999998997299999
Q 000789 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD 430 (1283)
Q Consensus 392 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~ 430 (1283)
+++ .=+.+-+|++.+|.|++|+|||+|+..+......+
T Consensus 57 ~ID-~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~ 94 (276)
T d1fx0a3 57 AID-AMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQ 94 (276)
T ss_dssp TTT-TTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTT
T ss_pred EEE-CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf 775-01454677667600677888579999977654046
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.92 E-value=0.41 Score=20.64 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|++++|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=83.75 E-value=0.53 Score=19.82 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999988899999960278
Q 000789 1070 TVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
-+-+.||.|+|||++++.+.+.+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.68 E-value=0.48 Score=20.13 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=24.0
Q ss_pred CCEEEEECCCCCCHHHHHHHH-HCCCCCCCCE
Q ss_conf 979999839999888999999-6027899656
Q 000789 1068 GKTVALVGESGSGKSTVIALI-ERFYDPDSGH 1098 (1283)
Q Consensus 1068 Ge~vaIVG~SGSGKSTL~~lL-~rl~~p~~G~ 1098 (1283)
--|+.++|.+|+|||||++-+ .+-+.|+-|-
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~~pTiG~ 37 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHVVLTSGI 37 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
T ss_conf 47799998999988999998950982788886
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.63 E-value=0.31 Score=21.60 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=22.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 79999839999888999999602789
Q 000789 1069 KTVALVGESGSGKSTVIALIERFYDP 1094 (1283)
Q Consensus 1069 e~vaIVG~SGSGKSTL~~lL~rl~~p 1094 (1283)
+.|+|-|.-||||||++++|...+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.60 E-value=0.44 Score=20.39 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=33.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCCC
Q ss_conf 88089899998699983999998997299999866-9999960
Q 000789 399 HVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE-VLIDGID 440 (1283)
Q Consensus 399 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~-i~i~g~~ 440 (1283)
-++.|..+.+.|++||||||++.-++.......|. ++||.+.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 8666336999648874889999999998754898899998976
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.60 E-value=0.3 Score=21.66 Aligned_cols=75 Identities=17% Similarity=0.387 Sum_probs=48.4
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCCCCCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCC
Q ss_conf 85099799998399998889999996027899656-89889318999927875032888157777712199997248999
Q 000789 1064 SIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH-VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQG 1142 (1283)
Q Consensus 1064 ~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~-I~idG~di~~~~~~~lR~~i~~V~Qd~~Lf~gTIreNl~~~~~~ 1142 (1283)
-++.|..+-|.|++|+||||+..-+..-..-..|. |+||... .++.+.++ ++++ |+ +|+.+..+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~-~~Gv---D~--------d~il~~~~- 120 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAK-KLGV---DT--------DSLLVSQP- 120 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHH-HHTC---CG--------GGCEEECC-
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHH-HHCC---CH--------HHEEEECC-
T ss_conf 8666336999648874889999999998754898899998976--67999999-8099---88--------99589669-
Q ss_pred CCCHHHHHHHHH
Q ss_conf 999999999999
Q 000789 1143 GATEEEIIAATE 1154 (1283)
Q Consensus 1143 ~~sd~ei~~al~ 1154 (1283)
.+-|++.+.++
T Consensus 121 -~~~E~~~~~~~ 131 (269)
T d1mo6a1 121 -DTGEQALEIAD 131 (269)
T ss_dssp -SSHHHHHHHHH
T ss_pred -CCHHHHHHHHH
T ss_conf -98999999999
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.55 E-value=0.36 Score=21.15 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=25.0
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 432215885099799998399998889999996027
Q 000789 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFY 1092 (1283)
Q Consensus 1057 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1092 (1283)
+|+.++ +|=-.|+|+|+.++|||||++.|++..
T Consensus 24 ~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 997079---987999988999997999999980998
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.55 E-value=0.62 Score=19.25 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|+.++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=83.53 E-value=0.27 Score=22.12 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699983999998997299
Q 000789 405 TAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 405 ~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
++.++|++|+|||||++-+..-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999987899999984488
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.51 E-value=0.73 Score=18.70 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999983999988899999960-----27899656
Q 000789 1070 TVALVGESGSGKSTVIALIER-----FYDPDSGH 1098 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r-----l~~p~~G~ 1098 (1283)
|+.++|.+|+|||||++-+.. -|.|+-|.
T Consensus 4 KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~ 37 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 9999999995989999999729999865872010
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.39 E-value=0.59 Score=19.43 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|++|+|+.|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.35 E-value=0.73 Score=18.73 Aligned_cols=21 Identities=38% Similarity=0.675 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|++++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.11 E-value=0.48 Score=20.15 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|+.++|.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.03 E-value=0.43 Score=20.53 Aligned_cols=22 Identities=23% Similarity=0.579 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7999983999988899999960
Q 000789 1069 KTVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1069 e~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
.|+.++|.+|+|||||++-+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899388999999971
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.00 E-value=0.47 Score=20.17 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|+.++|..|+|||||++-+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.86 E-value=0.44 Score=20.41 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699983999998997299
Q 000789 406 AALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 406 ~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+.+.||+|+||||++++++..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHH
T ss_conf 9998899987054699999997
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.81 E-value=0.5 Score=20.01 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|+.++|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.79 E-value=0.7 Score=18.87 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHH-CC----CCCCCC
Q ss_conf 99998399998889999996-02----789965
Q 000789 1070 TVALVGESGSGKSTVIALIE-RF----YDPDSG 1097 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~-rl----~~p~~G 1097 (1283)
|++++|..|+|||||++-+. +- |+|+.|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999999198999999972999865465301
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=82.78 E-value=0.34 Score=21.29 Aligned_cols=42 Identities=21% Similarity=0.359 Sum_probs=33.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCC
Q ss_conf 8808989999869998399999899729999986-69999960
Q 000789 399 HVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG-EVLIDGID 440 (1283)
Q Consensus 399 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G-~i~i~g~~ 440 (1283)
=++.|..+-+.|++||||||+...++...+...| -++||.+.
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~ 95 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 95 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 8667547898058765227999999999970799899998876
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.53 E-value=0.44 Score=20.40 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699983999998997299
Q 000789 406 AALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 406 ~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+.+.||.|+||||+++++++.+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899877558999999985
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.37 E-value=0.48 Score=20.14 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
||.++|..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.28 E-value=0.75 Score=18.63 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|+.++|..|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=82.10 E-value=0.52 Score=19.88 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=38.0
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCCCCCCCHHHHHCCEEE
Q ss_conf 88509979999839999888999999602789965-68988931899992787503288
Q 000789 1063 LSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG-HVLLDNIELPKFKLSWLRQQMGL 1120 (1283)
Q Consensus 1063 l~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~~~~lR~~i~~ 1120 (1283)
=-++.|..+-|.|++||||||+...++.-..-..| -++||... .++.+ +.+++++
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~-~a~~~Gv 107 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPV-YARALGV 107 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTC
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHH-HHHHHCC
T ss_conf 98667547898058765227999999999970799899998876--58999-9998289
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.99 E-value=0.49 Score=20.04 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.66 E-value=0.45 Score=20.37 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=27.6
Q ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 21588509979999839999888999999602
Q 000789 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERF 1091 (1283)
Q Consensus 1060 ~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl 1091 (1283)
|.=+.+-+||+++|.|.+|+|||||+.-+.+-
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 10256367887776679998989999999998
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=81.63 E-value=0.58 Score=19.50 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=12.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999888999999602
Q 000789 1070 TVALVGESGSGKSTVIALIERF 1091 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl 1091 (1283)
+|||||...+|||||++.|.+.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.31 E-value=0.58 Score=19.48 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 99983999988899999960278996568988931
Q 000789 1071 VALVGESGSGKSTVIALIERFYDPDSGHVLLDNIE 1105 (1283)
Q Consensus 1071 vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~d 1105 (1283)
+.++||+|+|||.|++.|.+.+.. --|.+|..+
T Consensus 55 ~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d~s~ 87 (315)
T d1r6bx3 55 FLFAGPTGVGKTEVTVQLSKALGI--ELLRFDMSE 87 (315)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTC--EEEEEEGGG
T ss_pred EEEECCCCCHHHHHHHHHHHHCCC--CEEEECCCC
T ss_conf 999778750069999999863367--706741544
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=81.27 E-value=0.62 Score=19.28 Aligned_cols=26 Identities=31% Similarity=0.255 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89899998699983999998997299
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFY 427 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 427 (1283)
+...++|+|..|.|||||++.+....
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~~ 68 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSKS 68 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 84089997799788899999999855
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.14 E-value=0.69 Score=18.89 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898999986999839999989972999
Q 000789 402 SGTTAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 402 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
|.=.++++|+..+|||||++.|++...
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 970899997248869999999970412
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=80.55 E-value=0.87 Score=18.13 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999988899999960278
Q 000789 1070 TVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
++++||...+|||||++.|.+-..
T Consensus 114 ~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 114 RALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 789986675443555425426615
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=80.54 E-value=0.55 Score=19.69 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8999986999839999989972999
Q 000789 404 TTAALVGQSGSGKSTVISLVERFYD 428 (1283)
Q Consensus 404 ~~~~ivG~sGsGKSTl~~~l~g~~~ 428 (1283)
-.++|-|+-||||||+++.|...+.
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2999989867789999999999817
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=80.49 E-value=0.35 Score=21.18 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=19.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 099799998399998889999996
Q 000789 1066 PSGKTVALVGESGSGKSTVIALIE 1089 (1283)
Q Consensus 1066 ~~Ge~vaIVG~SGSGKSTL~~lL~ 1089 (1283)
++-=++.++|++|+|||||++-+.
T Consensus 15 ~k~~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 15 NKELRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 966899999999998899998873
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=80.35 E-value=0.6 Score=19.40 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=30.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC---CCCCCCCEEEECCCCCCCCCHHHHHCCEEEECC
Q ss_conf 999983999988899999960---278996568988931899992787503288815
Q 000789 1070 TVALVGESGSGKSTVIALIER---FYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQ 1123 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r---l~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 1123 (1283)
.+||+|+.|||||||+..|+- ..+ ..|++. +|..+.++..++..+.+++-..
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si~~~ 62 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITITAA 62 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCCCCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC-CCCCEE-CCCEEEECCHHHHHCCCCCCCC
T ss_conf 999995898998999999999648534-023365-1846985658887518860011
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.27 E-value=0.63 Score=19.22 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
|+.++|.+|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=80.15 E-value=0.94 Score=17.86 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0997999983999988899999960278
Q 000789 1066 PSGKTVALVGESGSGKSTVIALIERFYD 1093 (1283)
Q Consensus 1066 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1093 (1283)
+|.=.+||+|.-.+|||||+..|++...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9970899997248869999999970412
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.01 E-value=0.38 Score=20.89 Aligned_cols=21 Identities=33% Similarity=0.620 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999988899999960
Q 000789 1070 TVALVGESGSGKSTVIALIER 1090 (1283)
Q Consensus 1070 ~vaIVG~SGSGKSTL~~lL~r 1090 (1283)
||.++|..|+|||||++.|++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|