Citrus Sinensis ID: 000791
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1282 | 2.2.26 [Sep-21-2011] | |||||||
| Q14839 | 1912 | Chromodomain-helicase-DNA | yes | no | 0.041 | 0.027 | 0.482 | 3e-09 | |
| Q9ULU4 | 1186 | Protein kinase C-binding | no | no | 0.035 | 0.038 | 0.5 | 4e-09 | |
| G5EBZ4 | 1829 | Protein let-418 OS=Caenor | yes | no | 0.073 | 0.051 | 0.294 | 6e-09 | |
| O97159 | 1982 | Chromodomain-helicase-DNA | yes | no | 0.032 | 0.021 | 0.568 | 7e-09 | |
| Q8TDI0 | 1954 | Chromodomain-helicase-DNA | no | no | 0.032 | 0.021 | 0.545 | 1e-08 | |
| Q6PDQ2 | 1915 | Chromodomain-helicase-DNA | no | no | 0.032 | 0.021 | 0.545 | 1e-08 | |
| O16102 | 892 | Chromodomain-helicase-DNA | no | no | 0.031 | 0.044 | 0.547 | 1e-07 | |
| Q22516 | 1787 | Chromodomain-helicase-DNA | no | no | 0.062 | 0.044 | 0.265 | 5e-07 | |
| O88491 | 2588 | Histone-lysine N-methyltr | no | no | 0.030 | 0.015 | 0.525 | 6e-07 | |
| Q96L73 | 2696 | Histone-lysine N-methyltr | no | no | 0.030 | 0.014 | 0.525 | 6e-07 |
| >sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2 | Back alignment and function desciption |
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Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 5/58 (8%)
Query: 825 GNLLQGENDYK---CSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCCC 877
G L+ E+D+ C VC GGELL CD CPSS+H +C+ L ++P+G+W CP C C
Sbjct: 438 GGDLEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTC 495
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Component of the histone deacetylase NuRD complex which participates in the remodeling of chromatin by deacetylating histones. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2 |
| >sp|Q9ULU4|PKCB1_HUMAN Protein kinase C-binding protein 1 OS=Homo sapiens GN=ZMYND8 PE=1 SV=2 | Back alignment and function description |
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| >sp|G5EBZ4|LE418_CAEEL Protein let-418 OS=Caenorhabditis elegans GN=let-418 PE=1 SV=1 | Back alignment and function description |
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| >sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1 | Back alignment and function description |
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| >sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3 | Back alignment and function description |
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| >sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2 | Back alignment and function description |
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| >sp|O88491|NSD1_MOUSE Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Mus musculus GN=Nsd1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q96L73|NSD1_HUMAN Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Homo sapiens GN=NSD1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1282 | ||||||
| 359478537 | 1332 | PREDICTED: uncharacterized protein LOC10 | 0.929 | 0.894 | 0.427 | 0.0 | |
| 449450934 | 1317 | PREDICTED: uncharacterized protein LOC10 | 0.929 | 0.905 | 0.410 | 0.0 | |
| 356541753 | 1120 | PREDICTED: uncharacterized protein LOC10 | 0.782 | 0.895 | 0.417 | 0.0 | |
| 357490843 | 1144 | Chromodomain helicase-DNA-binding protei | 0.829 | 0.929 | 0.42 | 0.0 | |
| 297745878 | 994 | unnamed protein product [Vitis vinifera] | 0.446 | 0.576 | 0.490 | 1e-159 | |
| 297745879 | 687 | unnamed protein product [Vitis vinifera] | 0.502 | 0.937 | 0.457 | 1e-158 | |
| 255571928 | 853 | conserved hypothetical protein [Ricinus | 0.394 | 0.593 | 0.541 | 1e-151 | |
| 224105951 | 978 | predicted protein [Populus trichocarpa] | 0.456 | 0.598 | 0.455 | 1e-150 | |
| 8843783 | 1095 | unnamed protein product [Arabidopsis tha | 0.492 | 0.577 | 0.404 | 1e-140 | |
| 297796793 | 1047 | hypothetical protein ARALYDRAFT_358079 [ | 0.453 | 0.555 | 0.416 | 1e-138 |
| >gi|359478537|ref|XP_002278840.2| PREDICTED: uncharacterized protein LOC100243375 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/1344 (42%), Positives = 785/1344 (58%), Gaps = 152/1344 (11%)
Query: 13 RKKRCGQRKLPVGERVEVRSDEDGFLGSWHAGTVIASSSDCRTVKYDHLLTDAGDDNLVD 72
R++ +RKL VGE VEVRS E+G LGSWH+GT+I R VKY +L D + ++
Sbjct: 53 RERTGNKRKLLVGEEVEVRSVEEGLLGSWHSGTIIGCDYLVRNVKYSEILDDRMGERFLE 112
Query: 73 IVCVSSIINSSTFADVTQSHSRGHIRPLPPPVKFGKCSLPFGLCVDVYYNEAWWEGVIFD 132
V VS I ++ D Q + RG IRPLPP FGK +L +GLCVDV++ EAWWEGVIFD
Sbjct: 113 SVSVSGAIEGTSVVDTDQCNHRGRIRPLPPQCDFGKWNLHYGLCVDVFFREAWWEGVIFD 172
Query: 133 LEDGSAERRIFFPDLGDEMTVGIDSLRITQDWDEFKETWHHRGTWLFLELIEEHERNSYL 192
EDG R++FFPDLGDE+TVG+D++RITQDW+E TW R WLFLELIEE+E++ L
Sbjct: 173 HEDGLENRKVFFPDLGDELTVGVDNIRITQDWNEGTATWERRRNWLFLELIEEYEQDWPL 232
Query: 193 AVSVKQIWYDLREKKGYKKLKDWTSSVRALWNELIWEVIYDNIKIVVDSFLVAAGIPQ-- 250
VS+KQIWYD+REKKG++K+K+WT ALW EL+ E I DN +I ++ + + P+
Sbjct: 233 NVSLKQIWYDVREKKGFEKVKEWTCPSNALWRELVREAIADNFRITLNK-ICSMLKPEVL 291
Query: 251 SSEQEVQPI-----LEFYRSATNVTEDPPIESADSLAVVP--VENLGNSNEMNLN---YT 300
++ V+PI L+ TN + S+ +V VEN G + +
Sbjct: 292 ANCHAVEPIRGISPLDGSMMMTNNDANATNSGDYSIGLVDKLVENGGLATRFQYTDPKCS 351
Query: 301 SLQSVQEKFDQDKLVSISEDDGPNKNLLTESDRTCNDKSVS-QVFPVLTSIRGGNSGVIC 359
S Q VQEK + D ++ E+ G D DK +S Q P+L N
Sbjct: 352 SNQHVQEKHEVDGVIPFVENSG--------LDMPYRDKEMSVQPQPLLVIPSKPNKLENF 403
Query: 360 VISHNGEQSSISKTVSIVGEYRSSKHRKKGWKWLPSSPDIVPGAEFCPDAITKYAKI--G 417
E S + S +RK W+ + + DI+ GAE C DAI +YA I G
Sbjct: 404 TFDCKSEGYSNN----------PSANRKNDWRRVDT--DILHGAESCFDAIIEYALISSG 451
Query: 418 KNNYTESLILSVKKHLKHQNWKLECTRDEKGTLRQRYISPDGKCYHSLRQVCLDLTETTV 477
K SL +V+KHL + WK+E K R RY SP+GK Y SLRQVC DL
Sbjct: 452 KRKPPNSLTENVRKHLSYLGWKIEFM--NKDFPRFRYTSPEGKTYLSLRQVCQDLRRPDA 509
Query: 478 KIPTP-DDLDASCPEQPEDDQDIDYRPPAMNSPSTELLV-------------------IK 517
I +P D P DD +N S++L+ I
Sbjct: 510 GIDSPISQDDQRSLLSPYDDLAFPLVKLQVNDLSSQLIEKSQVSKGKWTVPSHDDRVDID 569
Query: 518 PEYNPQAVVDWYMVGVDE----SRKFDLKKSDMVLKARQHLSAIGWVFKYKIGPNAKRNL 573
EY PQAVV++Y +G+D+ SRK D++ ++ KA++HLS +GW F Y KR +
Sbjct: 570 HEYCPQAVVNYYFLGLDKKEHHSRKDDIRSLNLKSKAKKHLSFMGWTFWYAY-RRGKREM 628
Query: 574 YHFSPGGKSYFSLRSACRACLNGVKGSESSASTCKTMENLISSDNA-------------- 619
+FSP GK Y+SLR+AC+ C++ SE +++T ++ + S+ A
Sbjct: 629 RYFSPKGKCYYSLRTACKGCMDEGGASEGTSTTWNPVKTMNVSEVALGQELSSALIDMRM 688
Query: 620 -----EDHFASAK-----------QSYAVNAI---------GFNTSVIPSYAVSKNLSP- 653
E + SAK +S ++A+ G ++ + S+ S
Sbjct: 689 QNSLIEQNVPSAKWPIKSSSISQLKSKEISAVTKKRHDGLHGVTSNSLQSWTQSTGKDGF 748
Query: 654 GSCMPKKIKLKMKRKNNSSCLVQMQANSHGTGLPIKLGDGMEDTHHMYVLRSRKKAKQLD 713
G + +L+ + N C +++ N G+ ++L +G++ T VLRSRK+A+Q+
Sbjct: 749 GIGLVGDRELRHPKDKNV-CFSKLK-NGKGSKALMRL-NGLDGTR---VLRSRKRARQVL 802
Query: 714 IPSFPNHNPRTVLSWLIDNNIILPRAKVTYCSRKKRRPKAEGRITRDGIKCKCCGKVYTL 773
IP N NPRT+LSWLIDNN++LPRAKV Y SR+ P A+GRITRDGIKC CC +V++L
Sbjct: 803 IPGSSN-NPRTILSWLIDNNVVLPRAKVHYSSRRDHHPMADGRITRDGIKCSCCQEVFSL 861
Query: 774 SGFEDHAGSTYCNPASHIFLQDGRSLLDCQLQVLKNGNIRNFTGEPHNRLKGNLLQGEND 833
S FE HAGS+Y A++IFL+DGRSLL+CQ+Q++++ + FT E +R K N END
Sbjct: 862 SRFEAHAGSSYHRSAANIFLEDGRSLLECQMQIIRDITGKGFTKESFSRKKSNERHHEND 921
Query: 834 YKCSVCHFGGELLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCCCSICGNSNSREEVEDVV 893
+ CSVCH+GG+L+LCD CPSSFH++C+GL+ +P+GDWFCPSCCC ICG + E
Sbjct: 922 HICSVCHYGGDLVLCDHCPSSFHKSCLGLKTLPEGDWFCPSCCCGICGENKFDGGSEQ-- 979
Query: 894 DGSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCEEIFLGLQRLLGKPIPIGV 953
D V C+QCE + CL+ KL ++ TWFCSK+C++IFLGLQ+LLGK P+GV
Sbjct: 980 DNVVFSCYQCE---RQCCLRKWGHVKLASYPNGTWFCSKQCKKIFLGLQKLLGKSFPVGV 1036
Query: 954 PNLTWTLVKFSQHDTCKLDATDIQTL----SKLNIAHRVMHECFEPVHEPYSSGDLAEDV 1009
NLTWTL+K + ++D DI+ L SKLNIA VMHECFEPV EP++ D+ EDV
Sbjct: 1037 DNLTWTLLKPIRSKGLEIDLPDIEALTEVYSKLNIALGVMHECFEPVKEPHTRRDVVEDV 1096
Query: 1010 LFSRWSMLNRLNFQGFYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRI 1069
+F R S LNRLNFQGFYTVLLERN+EL++VATVR++GEK AE+PL+GTRFQYRRLGMC I
Sbjct: 1097 IFCRGSDLNRLNFQGFYTVLLERNDELISVATVRVYGEKVAEVPLIGTRFQYRRLGMCHI 1156
Query: 1070 LMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRMTASERVQLVDYTFLNFPDTTMC 1129
LMNELEK+LMELGVE+L+LPA+P+VL TWTTSFGF +MT SER++ +DY+FL+F DT MC
Sbjct: 1157 LMNELEKKLMELGVERLVLPAVPSVLNTWTTSFGFSKMTDSERLRFLDYSFLDFQDTVMC 1216
Query: 1130 LKLLQPSAELKISRDFLTWQFRGSQPGLESNVCENGDNIDLAGSSTVSEVSQAEQTEESE 1189
KLL K ++ W + ID +SE ++EQ E+E
Sbjct: 1217 QKLLMKIPLAKSNQSTGAW---------------SKHIIDFNKRGAISEALKSEQV-EAE 1260
Query: 1190 TVEQRLADVAMKNYVTGNESSVHPIVMVKRPTCPRSKPQQTKITPECSVVDADFNKICMS 1249
V +D + K G+ S+ P + T P K + EC + D +
Sbjct: 1261 IVAPGPSDTSSKG---GDGSNSLPAT---QQTDPEHKLGLNENNLECLLKDDNH------ 1308
Query: 1250 RGSDVAN----CYKRRKI-SASGN 1268
+G D+ N CYKRR+I SASG+
Sbjct: 1309 KGRDIGNGYFKCYKRRRILSASGS 1332
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450934|ref|XP_004143217.1| PREDICTED: uncharacterized protein LOC101206451 [Cucumis sativus] gi|449525537|ref|XP_004169773.1| PREDICTED: uncharacterized LOC101206451 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356541753|ref|XP_003539338.1| PREDICTED: uncharacterized protein LOC100814680 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357490843|ref|XP_003615709.1| Chromodomain helicase-DNA-binding protein [Medicago truncatula] gi|355517044|gb|AES98667.1| Chromodomain helicase-DNA-binding protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297745878|emb|CBI15934.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297745879|emb|CBI15935.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255571928|ref|XP_002526906.1| conserved hypothetical protein [Ricinus communis] gi|223533745|gb|EEF35478.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224105951|ref|XP_002313990.1| predicted protein [Populus trichocarpa] gi|222850398|gb|EEE87945.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|8843783|dbj|BAA97331.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297796793|ref|XP_002866281.1| hypothetical protein ARALYDRAFT_358079 [Arabidopsis lyrata subsp. lyrata] gi|297312116|gb|EFH42540.1| hypothetical protein ARALYDRAFT_358079 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1282 | ||||||
| TAIR|locus:2178828 | 1065 | AT5G58610 "AT5G58610" [Arabido | 0.180 | 0.216 | 0.487 | 1.5e-178 | |
| TAIR|locus:2201021 | 1138 | AT1G05380 "AT1G05380" [Arabido | 0.332 | 0.374 | 0.376 | 2e-72 | |
| TAIR|locus:2163961 | 557 | AT5G63900 "AT5G63900" [Arabido | 0.219 | 0.504 | 0.395 | 3.3e-65 | |
| TAIR|locus:2086395 | 1189 | ROS4 "AT3G14980" [Arabidopsis | 0.350 | 0.377 | 0.348 | 4.2e-63 | |
| TAIR|locus:2147391 | 1179 | AT5G36740 [Arabidopsis thalian | 0.313 | 0.340 | 0.333 | 3.6e-56 | |
| TAIR|locus:2832118 | 1193 | AT5G36670 [Arabidopsis thalian | 0.313 | 0.336 | 0.306 | 3.5e-45 | |
| TAIR|locus:2040550 | 1007 | AT2G36720 "AT2G36720" [Arabido | 0.182 | 0.232 | 0.282 | 1.7e-29 | |
| UNIPROTKB|Q5TH12 | 175 | ZMYND8 "Protein kinase C-bindi | 0.032 | 0.24 | 0.476 | 2.4e-07 | |
| TAIR|locus:2203018 | 517 | AT1G09320 [Arabidopsis thalian | 0.095 | 0.237 | 0.339 | 1.2e-06 | |
| TAIR|locus:2202295 | 134 | AT1G06340 [Arabidopsis thalian | 0.042 | 0.410 | 0.344 | 1e-05 |
| TAIR|locus:2178828 AT5G58610 "AT5G58610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 633 (227.9 bits), Expect = 1.5e-178, Sum P(4) = 1.5e-178
Identities = 115/236 (48%), Positives = 155/236 (65%)
Query: 702 VLRSRKKAKQLDIPSFPNHNPRTVLSWLIDNNIILPRAKVTYCSRKKRRPKAEGRITRDG 761
VLRSRK+A+++ P H+PR +LSWL+DNN++LPR + C++K + EG++TR+G
Sbjct: 567 VLRSRKRAQRVITPISRKHSPRNILSWLMDNNVVLPRENIRCCNQKDTTVRKEGKLTREG 626
Query: 762 IKCKCCGKVYTLSGFEDHAGSTYCNPASHIFLQDGRSLLDCQLQVLKNGNIRNFTGEPHN 821
IKC CC +V+T++GFE HA C+ A++IFL DGRSLL+CQ++ K + +P +
Sbjct: 627 IKCSCCRRVFTINGFEVHANGASCSGAANIFLDDGRSLLECQVEAYK----KRKKAQPPD 682
Query: 822 RLKGNLLQGENDYKCSVCHFGGELLLCDRCPSSFHRNCVGLEDVPDGDWFXXXXXXXXXX 881
LK L QGEND CSVCH+GG+L+LCD CPS+FH NC+GLEDVPDGDWF
Sbjct: 683 MLKMKLRQGENDVFCSVCHYGGKLILCDGCPSAFHANCLGLEDVPDGDWFCQSCCCGACG 742
Query: 882 XXXXREEVEDVVDGSVLICHQCELKYHRKCLQ-NGATDKLKTHAKETWFCSKKCEE 936
+ + + + C QCELKYH CL+ +GA D L E WFCSK CEE
Sbjct: 743 QFFLKTTSTNAKEEKFISCKQCELKYHPSCLRYDGACDSLDKILGEKWFCSKDCEE 798
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| TAIR|locus:2201021 AT1G05380 "AT1G05380" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2163961 AT5G63900 "AT5G63900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2086395 ROS4 "AT3G14980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2147391 AT5G36740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2832118 AT5G36670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2040550 AT2G36720 "AT2G36720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5TH12 ZMYND8 "Protein kinase C-binding protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| TAIR|locus:2203018 AT1G09320 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2202295 AT1G06340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.3.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1282 | |||
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 9e-11 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 4e-09 | |
| pfam05641 | 66 | pfam05641, Agenet, Agenet domain | 6e-06 | |
| COG5141 | 669 | COG5141, COG5141, PHD zinc finger-containing prote | 6e-05 | |
| cd04301 | 65 | cd04301, NAT_SF, N-Acyltransferase superfamily: Va | 1e-04 | |
| smart00743 | 59 | smart00743, Agenet, Tudor-like domain present in p | 2e-04 | |
| pfam13831 | 33 | pfam13831, PHD_2, PHD-finger | 0.003 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 0.004 |
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 9e-11
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 836 CSVC---HFGGELLLCDRCPSSFHRNCVGL----EDVPDGDWFCPSCCCS 878
C+VC GELLLCD C FH C+G E++P+G+W+CP C
Sbjct: 2 CAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPEGEWYCPECKPK 51
|
PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51 |
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|218672 pfam05641, Agenet, Agenet domain | Back alignment and domain information |
|---|
| >gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|173926 cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate | Back alignment and domain information |
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| >gnl|CDD|214798 smart00743, Agenet, Tudor-like domain present in plant sequences | Back alignment and domain information |
|---|
| >gnl|CDD|222406 pfam13831, PHD_2, PHD-finger | Back alignment and domain information |
|---|
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1282 | |||
| PF05641 | 68 | Agenet: Agenet domain; InterPro: IPR008395 This do | 99.62 | |
| PRK10314 | 153 | putative acyltransferase; Provisional | 99.36 | |
| COG2153 | 155 | ElaA Predicted acyltransferase [General function p | 99.14 | |
| smart00743 | 61 | Agenet Tudor-like domain present in plant sequence | 99.02 | |
| PF13508 | 79 | Acetyltransf_7: Acetyltransferase (GNAT) domain; P | 98.97 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 98.93 | |
| KOG1244 | 336 | consensus Predicted transcription factor Requiem/N | 98.9 | |
| PF00583 | 83 | Acetyltransf_1: Acetyltransferase (GNAT) family; I | 98.9 | |
| PF13673 | 117 | Acetyltransf_10: Acetyltransferase (GNAT) domain; | 98.82 | |
| PRK10146 | 144 | aminoalkylphosphonic acid N-acetyltransferase; Pro | 98.74 | |
| COG1246 | 153 | ArgA N-acetylglutamate synthase and related acetyl | 98.72 | |
| PTZ00330 | 147 | acetyltransferase; Provisional | 98.69 | |
| KOG0956 | 900 | consensus PHD finger protein AF10 [General functio | 98.66 | |
| cd02169 | 297 | Citrate_lyase_ligase Citrate lyase ligase. Citrate | 98.64 | |
| PLN02706 | 150 | glucosamine 6-phosphate N-acetyltransferase | 98.61 | |
| PRK03624 | 140 | putative acetyltransferase; Provisional | 98.6 | |
| TIGR01575 | 131 | rimI ribosomal-protein-alanine acetyltransferase. | 98.59 | |
| PRK07757 | 152 | acetyltransferase; Provisional | 98.57 | |
| PF13527 | 127 | Acetyltransf_9: Acetyltransferase (GNAT) domain; P | 98.56 | |
| TIGR02382 | 191 | wecD_rffC TDP-D-fucosamine acetyltransferase. This | 98.55 | |
| PRK10975 | 194 | TDP-fucosamine acetyltransferase; Provisional | 98.53 | |
| PRK07922 | 169 | N-acetylglutamate synthase; Validated | 98.53 | |
| PRK09491 | 146 | rimI ribosomal-protein-alanine N-acetyltransferase | 98.5 | |
| PLN02825 | 515 | amino-acid N-acetyltransferase | 98.47 | |
| smart00743 | 61 | Agenet Tudor-like domain present in plant sequence | 98.46 | |
| TIGR00124 | 332 | cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP | 98.44 | |
| TIGR01890 | 429 | N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi | 98.42 | |
| PHA00673 | 154 | acetyltransferase domain containing protein | 98.42 | |
| PRK13688 | 156 | hypothetical protein; Provisional | 98.41 | |
| TIGR03827 | 266 | GNAT_ablB putative beta-lysine N-acetyltransferase | 98.37 | |
| PRK12308 | 614 | bifunctional argininosuccinate lyase/N-acetylgluta | 98.37 | |
| PRK05279 | 441 | N-acetylglutamate synthase; Validated | 98.36 | |
| KOG4443 | 694 | consensus Putative transcription factor HALR/MLL3, | 98.3 | |
| PRK09831 | 147 | putative acyltransferase; Provisional | 98.27 | |
| PRK10140 | 162 | putative acetyltransferase YhhY; Provisional | 98.26 | |
| TIGR03448 | 292 | mycothiol_MshD mycothiol biosynthesis acetyltransf | 98.22 | |
| COG5141 | 669 | PHD zinc finger-containing protein [General functi | 98.21 | |
| KOG3396 | 150 | consensus Glucosamine-phosphate N-acetyltransferas | 98.19 | |
| KOG3139 | 165 | consensus N-acetyltransferase [General function pr | 98.12 | |
| TIGR02406 | 157 | ectoine_EctA L-2,4-diaminobutyric acid acetyltrans | 98.11 | |
| PF13420 | 155 | Acetyltransf_4: Acetyltransferase (GNAT) domain; P | 98.1 | |
| COG0456 | 177 | RimI Acetyltransferases [General function predicti | 98.04 | |
| TIGR03448 | 292 | mycothiol_MshD mycothiol biosynthesis acetyltransf | 98.04 | |
| PHA01807 | 153 | hypothetical protein | 98.0 | |
| TIGR03103 | 547 | trio_acet_GNAT GNAT-family acetyltransferase TIGR0 | 97.98 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 97.97 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 97.96 | |
| KOG4299 | 613 | consensus PHD Zn-finger protein [General function | 97.95 | |
| KOG1244 | 336 | consensus Predicted transcription factor Requiem/N | 97.93 | |
| PRK10514 | 145 | putative acetyltransferase; Provisional | 97.93 | |
| KOG4443 | 694 | consensus Putative transcription factor HALR/MLL3, | 97.92 | |
| KOG4299 | 613 | consensus PHD Zn-finger protein [General function | 97.92 | |
| cd04301 | 65 | NAT_SF N-Acyltransferase superfamily: Various enzy | 97.92 | |
| PRK01346 | 411 | hypothetical protein; Provisional | 97.91 | |
| KOG4323 | 464 | consensus Polycomb-like PHD Zn-finger protein [Gen | 97.89 | |
| PRK10562 | 145 | putative acetyltransferase; Provisional | 97.88 | |
| TIGR01211 | 522 | ELP3 histone acetyltransferase, ELP3 family. The S | 97.87 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 97.85 | |
| PF13523 | 152 | Acetyltransf_8: Acetyltransferase (GNAT) domain; P | 97.84 | |
| TIGR01686 | 320 | FkbH FkbH-like domain. The C-terminal portion of t | 97.82 | |
| PRK15130 | 186 | spermidine N1-acetyltransferase; Provisional | 97.81 | |
| TIGR03585 | 156 | PseH pseudaminic acid biosynthesis N-acetyl transf | 97.79 | |
| KOG0954 | 893 | consensus PHD finger protein [General function pre | 97.79 | |
| PF08445 | 86 | FR47: FR47-like protein; InterPro: IPR013653 Prote | 97.77 | |
| COG3393 | 268 | Predicted acetyltransferase [General function pred | 97.74 | |
| PRK10809 | 194 | ribosomal-protein-S5-alanine N-acetyltransferase; | 97.56 | |
| COG3153 | 171 | Predicted acetyltransferase [General function pred | 97.53 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 97.51 | |
| PRK10151 | 179 | ribosomal-protein-L7/L12-serine acetyltransferase; | 97.47 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 97.46 | |
| KOG3397 | 225 | consensus Acetyltransferases [General function pre | 97.44 | |
| PF13302 | 142 | Acetyltransf_3: Acetyltransferase (GNAT) domain; P | 97.41 | |
| KOG3216 | 163 | consensus Diamine acetyltransferase [Amino acid tr | 97.41 | |
| KOG1973 | 274 | consensus Chromatin remodeling protein, contains P | 97.4 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 97.39 | |
| KOG1473 | 1414 | consensus Nucleosome remodeling factor, subunit NU | 97.37 | |
| COG5034 | 271 | TNG2 Chromatin remodeling protein, contains PhD zi | 97.17 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 97.14 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 97.1 | |
| PF13718 | 196 | GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2Z | 97.03 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 97.0 | |
| COG1247 | 169 | Sortase and related acyltransferases [Cell envelop | 96.89 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 96.79 | |
| smart00333 | 57 | TUDOR Tudor domain. Domain of unknown function pre | 96.56 | |
| PF15446 | 175 | zf-PHD-like: PHD/FYVE-zinc-finger like domain | 96.52 | |
| PF12746 | 265 | GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S | 96.4 | |
| KOG1973 | 274 | consensus Chromatin remodeling protein, contains P | 96.3 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 96.25 | |
| KOG4144 | 190 | consensus Arylalkylamine N-acetyltransferase [Gene | 95.78 | |
| PF14542 | 78 | Acetyltransf_CG: GCN5-related N-acetyl-transferase | 95.77 | |
| KOG3138 | 187 | consensus Predicted N-acetyltransferase [General f | 95.74 | |
| cd04718 | 148 | BAH_plant_2 BAH, or Bromo Adjacent Homology domain | 95.7 | |
| KOG2488 | 202 | consensus Acetyltransferase (GNAT) domain-containi | 95.65 | |
| COG1670 | 187 | RimL Acetyltransferases, including N-acetylases of | 95.61 | |
| COG0454 | 156 | WecD Histone acetyltransferase HPA2 and related ac | 95.57 | |
| smart00333 | 57 | TUDOR Tudor domain. Domain of unknown function pre | 95.52 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 95.32 | |
| PF08444 | 89 | Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acylt | 95.26 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 95.05 | |
| KOG3235 | 193 | consensus Subunit of the major N alpha-acetyltrans | 94.98 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 94.98 | |
| PF15057 | 124 | DUF4537: Domain of unknown function (DUF4537) | 94.94 | |
| PF12568 | 128 | DUF3749: Acetyltransferase (GNAT) domain; InterPro | 94.79 | |
| COG5034 | 271 | TNG2 Chromatin remodeling protein, contains PhD zi | 94.76 | |
| PF13831 | 36 | PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. | 94.64 | |
| COG2388 | 99 | Predicted acetyltransferase [General function pred | 94.6 | |
| PF05641 | 68 | Agenet: Agenet domain; InterPro: IPR008395 This do | 94.25 | |
| PF11717 | 55 | Tudor-knot: RNA binding activity-knot of a chromod | 94.15 | |
| KOG3234 | 173 | consensus Acetyltransferase, (GNAT) family [Genera | 93.73 | |
| COG3053 | 352 | CitC Citrate lyase synthetase [Energy production a | 93.18 | |
| KOG4323 | 464 | consensus Polycomb-like PHD Zn-finger protein [Gen | 92.95 | |
| PF09465 | 55 | LBR_tudor: Lamin-B receptor of TUDOR domain; Inter | 92.83 | |
| TIGR03694 | 241 | exosort_acyl putative PEP-CTERM/exosortase system- | 92.64 | |
| PF13480 | 142 | Acetyltransf_6: Acetyltransferase (GNAT) domain | 92.55 | |
| PF12148 | 85 | DUF3590: Protein of unknown function (DUF3590); In | 92.34 | |
| cd04718 | 148 | BAH_plant_2 BAH, or Bromo Adjacent Homology domain | 92.26 | |
| COG1243 | 515 | ELP3 Histone acetyltransferase [Transcription / Ch | 92.25 | |
| cd04508 | 48 | TUDOR Tudor domains are found in many eukaryotic o | 92.08 | |
| COG4552 | 389 | Eis Predicted acetyltransferase involved in intrac | 91.84 | |
| cd04508 | 48 | TUDOR Tudor domains are found in many eukaryotic o | 91.51 | |
| PF06852 | 181 | DUF1248: Protein of unknown function (DUF1248); In | 89.28 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 88.97 | |
| PF07039 | 130 | DUF1325: SGF29 tudor-like domain; InterPro: IPR010 | 87.86 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 87.74 | |
| COG3981 | 174 | Predicted acetyltransferase [General function pred | 87.69 | |
| PRK13834 | 207 | putative autoinducer synthesis protein; Provisiona | 86.62 | |
| PF00855 | 86 | PWWP: PWWP domain; InterPro: IPR000313 Upon charac | 86.49 | |
| KOG1246 | 904 | consensus DNA-binding protein jumonji/RBP2/SMCY, c | 85.71 | |
| PF00765 | 182 | Autoind_synth: Autoinducer synthetase; InterPro: I | 85.59 | |
| smart00561 | 96 | MBT Present in Drosophila Scm, l(3)mbt, and verteb | 84.92 | |
| cd05835 | 87 | Dnmt3b_related The PWWP domain is an essential com | 84.78 | |
| PF06003 | 264 | SMN: Survival motor neuron protein (SMN); InterPro | 84.68 | |
| KOG0954 | 893 | consensus PHD finger protein [General function pre | 84.43 | |
| KOG3038 | 264 | consensus Histone acetyltransferase SAGA associate | 83.84 | |
| smart00258 | 73 | SAND SAND domain. | 83.67 | |
| KOG0956 | 900 | consensus PHD finger protein AF10 [General functio | 83.23 | |
| cd06080 | 80 | MUM1_like Mutated melanoma-associated antigen 1 (M | 82.7 | |
| COG5141 | 669 | PHD zinc finger-containing protein [General functi | 82.61 | |
| cd05162 | 87 | PWWP The PWWP domain, named for a conserved Pro-Tr | 80.4 |
| >PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-16 Score=140.65 Aligned_cols=65 Identities=43% Similarity=0.756 Sum_probs=42.6
Q ss_pred CCCCCEEEEEeCCCCccceEEEEEEEEecCC-CceEEeCCccCCCCCCC-ceEEEEccccccCCccccccccCCCCcccC
Q 000791 22 LPVGERVEVRSDEDGFLGSWHAGTVIASSSD-CRTVKYDHLLTDAGDDN-LVDIVCVSSIINSSTFADVTQSHSRGHIRP 99 (1282)
Q Consensus 22 FkvGd~VEV~S~eeG~rGsWF~AtVI~~~~~-~~yVeY~dL~deDgs~~-L~E~V~~s~~~~g~~~~~~~r~~~r~~IRP 99 (1282)
|++|++|||+++++||+||||+|+|++..++ .++|+|+++.++++.++ |.|+|+.+ +|||
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~~~~V~Y~~~~~~~~~~~~l~e~V~~~------------------~iRP 62 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDDKYLVEYDDLPDEDGESPPLKEWVDAR------------------RIRP 62 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT-EEEEEETT-SS--------EEEEEGG------------------GEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCcEEEEEECCcccccccccccEEEechh------------------eEEC
Confidence 7999999999999999999999999999998 55599999999887766 99999963 5999
Q ss_pred CCCCC
Q 000791 100 LPPPV 104 (1282)
Q Consensus 100 ~PP~~ 104 (1282)
.||+.
T Consensus 63 ~pP~~ 67 (68)
T PF05641_consen 63 CPPPE 67 (68)
T ss_dssp -----
T ss_pred cCcCC
Confidence 99974
|
The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A. |
| >PRK10314 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
| >COG2153 ElaA Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >smart00743 Agenet Tudor-like domain present in plant sequences | Back alignment and domain information |
|---|
| >PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] | Back alignment and domain information |
|---|
| >PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2 | Back alignment and domain information |
|---|
| >PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A | Back alignment and domain information |
|---|
| >PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional | Back alignment and domain information |
|---|
| >COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PTZ00330 acetyltransferase; Provisional | Back alignment and domain information |
|---|
| >KOG0956 consensus PHD finger protein AF10 [General function prediction only] | Back alignment and domain information |
|---|
| >cd02169 Citrate_lyase_ligase Citrate lyase ligase | Back alignment and domain information |
|---|
| >PLN02706 glucosamine 6-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
| >PRK03624 putative acetyltransferase; Provisional | Back alignment and domain information |
|---|
| >TIGR01575 rimI ribosomal-protein-alanine acetyltransferase | Back alignment and domain information |
|---|
| >PRK07757 acetyltransferase; Provisional | Back alignment and domain information |
|---|
| >PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B | Back alignment and domain information |
|---|
| >TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase | Back alignment and domain information |
|---|
| >PRK10975 TDP-fucosamine acetyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK07922 N-acetylglutamate synthase; Validated | Back alignment and domain information |
|---|
| >PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional | Back alignment and domain information |
|---|
| >PLN02825 amino-acid N-acetyltransferase | Back alignment and domain information |
|---|
| >smart00743 Agenet Tudor-like domain present in plant sequences | Back alignment and domain information |
|---|
| >TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase | Back alignment and domain information |
|---|
| >TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase | Back alignment and domain information |
|---|
| >PHA00673 acetyltransferase domain containing protein | Back alignment and domain information |
|---|
| >PRK13688 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase | Back alignment and domain information |
|---|
| >PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional | Back alignment and domain information |
|---|
| >PRK05279 N-acetylglutamate synthase; Validated | Back alignment and domain information |
|---|
| >KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] | Back alignment and domain information |
|---|
| >PRK09831 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK10140 putative acetyltransferase YhhY; Provisional | Back alignment and domain information |
|---|
| >TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase | Back alignment and domain information |
|---|
| >COG5141 PHD zinc finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
| >KOG3139 consensus N-acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase | Back alignment and domain information |
|---|
| >PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A | Back alignment and domain information |
|---|
| >COG0456 RimI Acetyltransferases [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase | Back alignment and domain information |
|---|
| >PHA01807 hypothetical protein | Back alignment and domain information |
|---|
| >TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4299 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] | Back alignment and domain information |
|---|
| >PRK10514 putative acetyltransferase; Provisional | Back alignment and domain information |
|---|
| >KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4299 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate | Back alignment and domain information |
|---|
| >PRK01346 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10562 putative acetyltransferase; Provisional | Back alignment and domain information |
|---|
| >TIGR01211 ELP3 histone acetyltransferase, ELP3 family | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A | Back alignment and domain information |
|---|
| >TIGR01686 FkbH FkbH-like domain | Back alignment and domain information |
|---|
| >PRK15130 spermidine N1-acetyltransferase; Provisional | Back alignment and domain information |
|---|
| >TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase | Back alignment and domain information |
|---|
| >KOG0954 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT) | Back alignment and domain information |
|---|
| >COG3393 Predicted acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional | Back alignment and domain information |
|---|
| >COG3153 Predicted acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG3397 consensus Acetyltransferases [General function prediction only] | Back alignment and domain information |
|---|
| >PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A | Back alignment and domain information |
|---|
| >KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >smart00333 TUDOR Tudor domain | Back alignment and domain information |
|---|
| >PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain | Back alignment and domain information |
|---|
| >PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B | Back alignment and domain information |
|---|
| >KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A | Back alignment and domain information |
|---|
| >KOG3138 consensus Predicted N-acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function | Back alignment and domain information |
|---|
| >KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only] | Back alignment and domain information |
|---|
| >smart00333 TUDOR Tudor domain | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2 | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF15057 DUF4537: Domain of unknown function (DUF4537) | Back alignment and domain information |
|---|
| >PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length | Back alignment and domain information |
|---|
| >COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A | Back alignment and domain information |
|---|
| >COG2388 Predicted acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO [] | Back alignment and domain information |
|---|
| >PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F | Back alignment and domain information |
|---|
| >KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only] | Back alignment and domain information |
|---|
| >COG3053 CitC Citrate lyase synthetase [Energy production and conversion] | Back alignment and domain information |
|---|
| >KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane | Back alignment and domain information |
|---|
| >TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase | Back alignment and domain information |
|---|
| >PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain | Back alignment and domain information |
|---|
| >PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length | Back alignment and domain information |
|---|
| >cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function | Back alignment and domain information |
|---|
| >COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains | Back alignment and domain information |
|---|
| >COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only] | Back alignment and domain information |
|---|
| >cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains | Back alignment and domain information |
|---|
| >PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >COG3981 Predicted acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK13834 putative autoinducer synthesis protein; Provisional | Back alignment and domain information |
|---|
| >PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified [] | Back alignment and domain information |
|---|
| >KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth | Back alignment and domain information |
|---|
| >smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2 | Back alignment and domain information |
|---|
| >cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis | Back alignment and domain information |
|---|
| >PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins | Back alignment and domain information |
|---|
| >KOG0954 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only] | Back alignment and domain information |
|---|
| >smart00258 SAND SAND domain | Back alignment and domain information |
|---|
| >KOG0956 consensus PHD finger protein AF10 [General function prediction only] | Back alignment and domain information |
|---|
| >cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA) | Back alignment and domain information |
|---|
| >COG5141 PHD zinc finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1282 | ||||
| 1xwh_A | 66 | Nmr Structure Of The First Phd Finger Of Autoimmune | 4e-05 | ||
| 1mm3_A | 61 | Solution Structure Of The 2nd Phd Domain From Mi2b | 7e-05 | ||
| 2l5u_A | 61 | Structure Of The First Phd Finger (Phd1) From Chd4 | 1e-04 | ||
| 2kft_A | 56 | Nmr Solution Structure Of The First Phd Finger Doma | 2e-04 | ||
| 1mm2_A | 61 | Solution Structure Of The 2nd Phd Domain From Mi2b | 2e-04 | ||
| 3o33_A | 184 | Crystal Structure Of Trim24 Phd-Bromo In The Free S | 3e-04 |
| >pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune Regulator Protein (Aire1): Insights Into Apeced Length = 66 | Back alignment and structure |
|
| >pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C- Terminal Loop Replaced By Corresponding Loop From Wstf Length = 61 | Back alignment and structure |
| >pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b) Length = 61 | Back alignment and structure |
| >pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of Human Autoimmune Regulator (Aire) In Complex With Histone H3(1-20cys) Peptide Length = 56 | Back alignment and structure |
| >pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b Length = 61 | Back alignment and structure |
| >pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 7e-21
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 831 ENDYKCSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCCCSICGNSNSREE 888
+N+ +C+VC GGEL+ CD CP +FH C+ L ++P G W C SC + R E
Sbjct: 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAE 65
|
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
| >2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
| >3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 | Back alignment and structure |
|---|
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Length = 90 | Back alignment and structure |
|---|
| >3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Length = 159 | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Length = 71 | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 | Back alignment and structure |
|---|
| >1z4r_A General control of amino acid synthesis protein 5-like 2; GCN5, acetyltransferase, SGC, structural genomics, structural genomics consortium; HET: ACO; 1.74A {Homo sapiens} SCOP: d.108.1.1 PDB: 1cm0_B* Length = 168 | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
| >2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Length = 386 | Back alignment and structure |
|---|
| >1qst_A TGCN5 histone acetyl transferase; GCN5-related N-acetyltransferase, COA binding protein; HET: EPE; 1.70A {Tetrahymena thermophila} SCOP: d.108.1.1 PDB: 1m1d_A* 1pu9_A* 1pua_A* 5gcn_A* 1qsr_A* 1q2d_A* 1q2c_A* 1qsn_A* Length = 160 | Back alignment and structure |
|---|
| >2i00_A Acetyltransferase, GNAT family; structural genomics, PSI-2, structure initiative, midwest center for structural genomic transferase; 2.30A {Enterococcus faecalis} SCOP: d.106.1.4 d.108.1.10 Length = 406 | Back alignment and structure |
|---|
| >2atr_A Acetyltransferase, GNAT family; MCSG, structural genomics, PSI, protein structure INIT midwest center for structural genomics; 2.01A {Streptococcus pneumoniae} SCOP: d.108.1.1 Length = 138 | Back alignment and structure |
|---|
| >3n7z_A Acetyltransferase, GNAT family; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.75A {Bacillus anthracis} Length = 388 | Back alignment and structure |
|---|
| >2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Length = 65 | Back alignment and structure |
|---|
| >2hv2_A Hypothetical protein; PSI, protein structure initiative, midwest center for struct genomics, MCSG, structural genomics, unknown function; HET: EPE PG4; 2.40A {Enterococcus faecalis} SCOP: d.106.1.4 d.108.1.10 Length = 400 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 | Back alignment and structure |
|---|
| >3efa_A Putative acetyltransferase; structural genom 2, protein structure initiative, midwest center for structu genomics, MCSG; 2.42A {Lactobacillus plantarum WCFS1} Length = 147 | Back alignment and structure |
|---|
| >3t90_A Glucose-6-phosphate acetyltransferase 1; GNAT fold, glcnac biosynthesis, alpha/beta protein; HET: EPE; 1.50A {Arabidopsis thaliana} Length = 149 | Back alignment and structure |
|---|
| >3pp9_A Putative streptothricin acetyltransferase; toxin production resistance, infectious diseases, structural genomics; HET: MSE ACO; 1.60A {Bacillus anthracis} Length = 187 | Back alignment and structure |
|---|
| >1ygh_A ADA4, protein (transcriptional activator GCN5); transcriptional regulation, histone acetylation; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 Length = 164 | Back alignment and structure |
|---|
| >2pdo_A Acetyltransferase YPEA; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: MSE; 2.00A {Shigella flexneri 2A} Length = 144 | Back alignment and structure |
|---|
| >2vez_A Putative glucosamine 6-phosphate acetyltransferase; acyltransferase; HET: ACO G6P; 1.45A {Aspergillus fumigatus} PDB: 2vxk_A* Length = 190 | Back alignment and structure |
|---|
| >3t9y_A Acetyltransferase, GNAT family; PSI-biology, structural genomics, midwest center for structu genomics, MCSG; HET: PGE; 2.00A {Staphylococcus aureus} Length = 150 | Back alignment and structure |
|---|
| >2jdc_A Glyphosate N-acetyltransferase; GNAT; HET: CAO; 1.6A {Bacillus licheniformis} SCOP: d.108.1.1 PDB: 2bsw_A* 2jdd_A* Length = 146 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1282 | ||||
| d1mm2a_ | 61 | g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens | 4e-14 | |
| d1fp0a1 | 70 | g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- | 1e-13 | |
| d1f62a_ | 51 | g.50.1.2 (A:) Williams-Beuren syndrome transcripti | 1e-11 | |
| d1ygha_ | 164 | d.108.1.1 (A:) Catalytic domain of GCN5 histone ac | 1e-11 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 8e-10 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 2e-09 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 1e-08 | |
| d1weva_ | 88 | g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu | 8e-08 | |
| d1weva_ | 88 | g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu | 1e-04 | |
| d1wesa_ | 71 | g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I | 5e-07 | |
| d2atra1 | 137 | d.108.1.1 (A:1-137) Probable acetyltransferase SP0 | 8e-07 | |
| d2pnxa1 | 51 | g.50.1.2 (A:195-245) Inhibitor of growth protein 4 | 1e-06 | |
| d1wepa_ | 79 | g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus | 2e-04 |
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: PHD domain domain: Mi2-beta (CHD4) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.1 bits (161), Expect = 4e-14
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 825 GNLLQGENDYKCSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCCCS 878
G L + C VC GGELL CD CPSS+H +C+ L ++P+G+W CP C C
Sbjct: 1 GPLGSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56
|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1ygha_ d.108.1.1 (A:) Catalytic domain of GCN5 histone acetyltransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 164 | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 | Back information, alignment and structure |
|---|
| >d2atra1 d.108.1.1 (A:1-137) Probable acetyltransferase SP0256 {Streptococcus pneumoniae [TaxId: 1313]} Length = 137 | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1282 | |||
| d1z4ra1 | 162 | Catalytic domain of GCN5 histone acetyltransferase | 99.59 | |
| d1xeba_ | 149 | Hypothetical protein PA0115 {Pseudomonas aeruginos | 99.55 | |
| d1q2ya_ | 140 | Probable acetyltransferase YjcF {Bacillus subtilis | 99.54 | |
| d1ygha_ | 164 | Catalytic domain of GCN5 histone acetyltransferase | 99.53 | |
| d1qsra_ | 162 | Catalytic domain of GCN5 histone acetyltransferase | 99.5 | |
| d2jdca1 | 145 | Probable acetyltransferase YitI {Bacillus lichenif | 99.48 | |
| d1n71a_ | 180 | Aminoglycoside 6'-N-acetyltransferase {Enterococcu | 99.24 | |
| d1y7ra1 | 133 | Hypothetical protein SA2161 {Staphylococcus aureus | 99.22 | |
| d1yx0a1 | 151 | Hypothetical protein YsnE {Bacillus subtilis [TaxI | 99.17 | |
| d2atra1 | 137 | Probable acetyltransferase SP0256 {Streptococcus p | 99.15 | |
| d1y9ka1 | 152 | IAA acetyltransferase {Bacillus cereus [TaxId: 139 | 99.08 | |
| d1yvka1 | 152 | Hypothetical protein YvbK (BSu33890) {Bacillus sub | 99.07 | |
| d1y9wa1 | 140 | Probable acetyltransferase BC2806 {Bacillus cereus | 99.03 | |
| d1ghea_ | 170 | Tabtoxin resistance protein {Pseudomonas syringae | 99.0 | |
| d2fiwa1 | 156 | Probable N-acetyltransferase RPA1999 {Rhodopseudom | 98.96 | |
| d1u6ma_ | 189 | Putative acetyltransferase EF0945 {Enterococcus fa | 98.94 | |
| d1tiqa_ | 173 | Protease synthase and sporulation negative regulat | 98.93 | |
| d2fe7a1 | 156 | Probable N-acetyltransferase PA0478 {Pseudomonas a | 98.92 | |
| d2g3aa1 | 137 | Probable acetyltransferase Atu2258 {Agrobacterium | 98.91 | |
| d1i12a_ | 157 | Glucosamine-phosphate N-acetyltransferase GNA1 {Ba | 98.91 | |
| d1vkca_ | 149 | Putative acetyltransferase PF0028 {Pyrococcus furi | 98.89 | |
| d1m4ia_ | 181 | Aminoglycoside 2'-N-acetyltransferase {Mycobacteri | 98.88 | |
| d2gana1 | 182 | Hypothetical protein PH0736 {Pyrococcus horikoshii | 98.87 | |
| d2i6ca1 | 160 | Putative acetyltransferase PA4794 {Pseudomonas aer | 98.84 | |
| d1s3za_ | 147 | Aminoglycoside N-acetyltransferase AAC(6')-IY {Sal | 98.84 | |
| d2fiaa1 | 157 | Probable acetyltransferase EF1919 {Enterococcus fa | 98.81 | |
| d2fl4a1 | 146 | Probable spermine/spermidine acetyltransferase EF1 | 98.8 | |
| d2hv2a2 | 285 | Hypothetical protein EF1021 {Enterococcus faecalis | 98.75 | |
| d1ufha_ | 155 | Putative acetyltransferase YycN {Bacillus subtilis | 98.73 | |
| d1yr0a1 | 163 | Phosphinothricin acetyltransferase {Agrobacterium | 98.73 | |
| d1cjwa_ | 166 | Serotonin N-acetyltranferase {Sheep (Ovis aries) [ | 98.73 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 98.71 | |
| d2ozga2 | 283 | Putative acetyltransferase Ava4977 {Anabaena varia | 98.7 | |
| d1yvoa1 | 169 | Hypothetical protein PA4866 {Pseudomonas aeruginos | 98.69 | |
| d1z4ea1 | 150 | Transcriptional regulator BH1968 {Bacillus halodur | 98.65 | |
| d2cy2a1 | 174 | Probable acetyltransferase TTHA1209 {Thermus therm | 98.6 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 98.59 | |
| d1vhsa_ | 165 | Putative phosphinothricin acetyltransferase YwnH { | 98.59 | |
| d1mk4a_ | 157 | Hypothetical protein YqiY {Bacillus subtilis [TaxI | 98.58 | |
| d2i00a2 | 291 | Putative acetyltransferase EF2353 {Enterococcus fa | 98.57 | |
| d1wwza1 | 157 | Hypothetical protein PH1933 {Pyrococcus horikoshii | 98.57 | |
| d2beia1 | 167 | Diamine acetyltransferase 2 {Human (Homo sapiens) | 98.55 | |
| d2b5ga1 | 167 | Diamine acetyltransferase 1 {Human (Homo sapiens) | 98.53 | |
| d1bo4a_ | 137 | Aminoglycoside 3-N-acetyltransferase {Serratia mar | 98.53 | |
| d2ae6a1 | 161 | Putative acetyltransferase EF0244 {Enterococcus fa | 98.51 | |
| d2euia1 | 153 | Probable acetyltransferase PA4026 {Pseudomonas aer | 98.46 | |
| d1qsma_ | 150 | Histone acetyltransferase HPA2 {Baker's yeast (Sac | 98.35 | |
| d1p0ha_ | 308 | Mycothiol synthase MshD {Mycobacterium tuberculosi | 98.33 | |
| d1ro5a_ | 197 | Autoinducer synthesis protein LasI {Pseudomonas ae | 98.3 | |
| d2ge3a1 | 164 | Probable acetyltransferase Atu2290 {Agrobacterium | 98.28 | |
| d1sqha_ | 297 | Hypothetical protein cg14615-pa {Fruit fly (Drosop | 98.2 | |
| d2aj6a1 | 118 | Hypothetical protein MW0638 {Staphylococcus aureus | 98.14 | |
| d1r57a_ | 102 | Hypothetical protein SA2309 {Staphylococcus aureus | 98.07 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 97.88 | |
| d1nsla_ | 180 | Probable acetyltransferase YdaF {Bacillus subtilis | 97.83 | |
| d1yrea1 | 183 | Hypothetical protein PA3270 {Pseudomonas aeruginos | 97.8 | |
| d1wesa_ | 71 | PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu | 97.68 | |
| d1s7ka1 | 174 | L7/L12-Ribosomal-protein-serine acetyltransferase | 97.65 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 97.57 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 97.56 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 97.53 | |
| d2fcka1 | 178 | Putative ribosomal-protein-serine acetyltransferas | 97.43 | |
| d1yk3a1 | 198 | Hypothetical protein Rv1347c/MT1389 {Mycobacterium | 97.36 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 97.3 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 97.15 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 97.09 | |
| d1kzfa_ | 210 | Acyl-homoserinelactone synthase EsaI {Pantoea stew | 96.99 | |
| d1p0ha_ | 308 | Mycothiol synthase MshD {Mycobacterium tuberculosi | 96.8 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 96.7 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 96.46 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 96.29 | |
| d2fsra1 | 164 | Probable acetyltranferase Atu2435 {Agrobacterium t | 96.13 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 95.88 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 95.81 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 95.73 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 95.7 | |
| d1mhna_ | 59 | Survival motor neuron protein 1, smn {Human (Homo | 95.57 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 95.56 | |
| d1wgsa_ | 133 | Probable histone acetyltransferase MYST1 {Mouse (M | 95.54 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 95.42 | |
| d2d9ta1 | 60 | Tudor domain-containing protein 3, TDRD3 {Mouse (M | 95.19 | |
| d1wesa_ | 71 | PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu | 95.01 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 94.6 | |
| d2d9ta1 | 60 | Tudor domain-containing protein 3, TDRD3 {Mouse (M | 94.58 | |
| d2hqxa1 | 90 | P100 co-activator, SND1 {Human (Homo sapiens) [Tax | 94.1 | |
| d1mhna_ | 59 | Survival motor neuron protein 1, smn {Human (Homo | 92.47 | |
| d2diqa1 | 97 | Tudor and KH domain-containing protein TDRKH {Huma | 92.42 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 92.08 | |
| d2diqa1 | 97 | Tudor and KH domain-containing protein TDRKH {Huma | 90.37 | |
| d2buda1 | 88 | Putative histone acetyltransferase MOF {Fruit fly | 89.31 | |
| d1wjqa_ | 107 | Lethal(3)malignant brain tumor-like 3 protein, L3M | 88.4 | |
| d1khca_ | 137 | DNA methyltransferase DNMT3B {Mouse (Mus musculus) | 87.81 | |
| d1oz2a3 | 106 | Lethal(3)malignant brain tumor-like protein {Human | 87.69 | |
| d2nlua1 | 100 | Hepatoma-derived growth factor, HDGF {Human (Homo | 86.96 | |
| d1wila_ | 89 | Hypothetical protein KIAA1045 {Human (Homo sapiens | 86.12 | |
| d2hqxa1 | 90 | P100 co-activator, SND1 {Human (Homo sapiens) [Tax | 85.59 | |
| d2f5ka1 | 83 | Mortality factor 4-like protein 1, MRG15 {Human (H | 83.28 | |
| d1h3za_ | 108 | Hypothetical protein SPBC215.07c {Fission yeast (S | 81.33 | |
| d1oz2a1 | 110 | Lethal(3)malignant brain tumor-like protein {Human | 80.29 |
| >d1z4ra1 d.108.1.1 (A:497-658) Catalytic domain of GCN5 histone acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Catalytic domain of GCN5 histone acetyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=5e-14 Score=111.04 Aligned_cols=142 Identities=16% Similarity=0.206 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEEEEEE-CCCEEEEEEE
Q ss_conf 565444566887534044444678700238998862047887767686099999769999998999994-5853798553
Q 000791 977 QTLSKLNIAHRVMHECFEPVHEPYSSGDLAEDVLFSRWSMLNRLNFQGFYTVLLERNEELVTVATVRIF-GEKAAEIPLV 1055 (1282)
Q Consensus 977 e~lSkLa~AL~Vm~EcF~Pi~D~rTg~DlI~~vvy~r~s~~~Rl~f~Gfy~~VL~~~~e~VsaA~iri~-g~~~AEIprV 1055 (1282)
+.+.-|..+-.+|...| +...+|.|..++|+.. ..++++..++++|+++.++++ +.+.|||.++
T Consensus 19 ~~~~~L~~~~~iF~~~l-----p~m~~~yi~r~~~d~~----------~~~~v~~~~~~iIG~i~~~~~~~~~~aeI~~l 83 (162)
T d1z4ra1 19 RVLLWLVGLQNVFSHQL-----PRMPKEYIARLVFDPK----------HKTLALIKDGRVIGGICFRMFPTQGFTEIVFC 83 (162)
T ss_dssp HHHHHHHHHHHHHHHHC-----TTSCHHHHHHHHTCTT----------CEEEEEEETTEEEEEEEEEEETTTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHCCCC----------CEEEEEEECCEEEEEEEEEEECCCCEEEEEEE
T ss_conf 89999999899998767-----8973999999965988----------46999999999999999999788998999999
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCEEECCHHHHHHHCCCCEEEECCCCCEEECCCC
Q ss_conf 34148556892699999999999871961999458300467634045908869888982025404420885201003578
Q 000791 1056 GTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRMTASERVQLVDYTFLNFPDTTMCLKLLQP 1135 (1282)
Q Consensus 1056 AT~~~yRgqG~gr~Lm~aIE~~l~~lgV~~LvLpAq~~A~~fwt~klGF~~~~~~~~~~~~~h~~m~F~gt~~lqK~L~~ 1135 (1282)
||.+.|||||+|+.||+.+++.++..|+..+++.|...|++||+ |+||+............+ .-.+.|.++||=.|.|
T Consensus 84 aV~~~~qgkGiG~~Lm~~l~~~~~~~g~~~i~~~~~~~A~~fY~-k~GF~~~~~~~~~~~~~~-ikdy~~~~lm~~~~~p 161 (162)
T d1z4ra1 84 AVTSNEQVKGYGTHLMNHLKEYHIKHNILYFLTYADEYAIGYFK-KQGFSKDIKVPKSRYLGY-IKDYEGATLMECELNP 161 (162)
T ss_dssp EECGGGCSSSHHHHHHHHHHHHHHHTTCCEEEEEECGGGHHHHH-HTTEESCCCSCHHHHTTT-SCCCTTCEEEEEECCC
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH-HCCCEEECCCCHHHHCCC-CCCCCCEEEEEEECCC
T ss_conf 99803655258999999999999877986999925841677898-579867233766676287-6688983999986479
|
| >d1xeba_ d.108.1.1 (A:) Hypothetical protein PA0115 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1q2ya_ d.108.1.1 (A:) Probable acetyltransferase YjcF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1ygha_ d.108.1.1 (A:) Catalytic domain of GCN5 histone acetyltransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1qsra_ d.108.1.1 (A:) Catalytic domain of GCN5 histone acetyltransferase {Tetrahymena thermophila [TaxId: 5911]} | Back information, alignment and structure |
|---|
| >d2jdca1 d.108.1.1 (A:2-146) Probable acetyltransferase YitI {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
| >d1n71a_ d.108.1.1 (A:) Aminoglycoside 6'-N-acetyltransferase {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
| >d1y7ra1 d.108.1.1 (A:1-133) Hypothetical protein SA2161 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1yx0a1 d.108.1.1 (A:1-151) Hypothetical protein YsnE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d2atra1 d.108.1.1 (A:1-137) Probable acetyltransferase SP0256 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1y9ka1 d.108.1.1 (A:1-152) IAA acetyltransferase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
| >d1yvka1 d.108.1.1 (A:5-156) Hypothetical protein YvbK (BSu33890) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1y9wa1 d.108.1.1 (A:1-140) Probable acetyltransferase BC2806 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
| >d1ghea_ d.108.1.1 (A:) Tabtoxin resistance protein {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
| >d2fiwa1 d.108.1.1 (A:2-157) Probable N-acetyltransferase RPA1999 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
| >d1u6ma_ d.108.1.1 (A:) Putative acetyltransferase EF0945 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d1tiqa_ d.108.1.1 (A:) Protease synthase and sporulation negative regulatory protein PaiA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d2fe7a1 d.108.1.1 (A:3-158) Probable N-acetyltransferase PA0478 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2g3aa1 d.108.1.1 (A:1-137) Probable acetyltransferase Atu2258 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
| >d1i12a_ d.108.1.1 (A:) Glucosamine-phosphate N-acetyltransferase GNA1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1vkca_ d.108.1.1 (A:) Putative acetyltransferase PF0028 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1m4ia_ d.108.1.1 (A:) Aminoglycoside 2'-N-acetyltransferase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d2gana1 d.108.1.1 (A:1-182) Hypothetical protein PH0736 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d2i6ca1 d.108.1.1 (A:1001-1160) Putative acetyltransferase PA4794 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1s3za_ d.108.1.1 (A:) Aminoglycoside N-acetyltransferase AAC(6')-IY {Salmonella enteritidis [TaxId: 149539]} | Back information, alignment and structure |
|---|
| >d2fiaa1 d.108.1.1 (A:1-157) Probable acetyltransferase EF1919 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d2fl4a1 d.108.1.1 (A:1-146) Probable spermine/spermidine acetyltransferase EF1086 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d2hv2a2 d.108.1.10 (A:2-286) Hypothetical protein EF1021 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d1ufha_ d.108.1.1 (A:) Putative acetyltransferase YycN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1yr0a1 d.108.1.1 (A:4-166) Phosphinothricin acetyltransferase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
| >d1cjwa_ d.108.1.1 (A:) Serotonin N-acetyltranferase {Sheep (Ovis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ozga2 d.108.1.10 (A:8-290) Putative acetyltransferase Ava4977 {Anabaena variabilis [TaxId: 1172]} | Back information, alignment and structure |
|---|
| >d1yvoa1 d.108.1.1 (A:4-172) Hypothetical protein PA4866 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1z4ea1 d.108.1.1 (A:4-153) Transcriptional regulator BH1968 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
| >d2cy2a1 d.108.1.1 (A:1-174) Probable acetyltransferase TTHA1209 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vhsa_ d.108.1.1 (A:) Putative phosphinothricin acetyltransferase YwnH {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1mk4a_ d.108.1.1 (A:) Hypothetical protein YqiY {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d2i00a2 d.108.1.10 (A:10-300) Putative acetyltransferase EF2353 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d1wwza1 d.108.1.1 (A:1-157) Hypothetical protein PH1933 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d2beia1 d.108.1.1 (A:3-169) Diamine acetyltransferase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2b5ga1 d.108.1.1 (A:3-169) Diamine acetyltransferase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bo4a_ d.108.1.1 (A:) Aminoglycoside 3-N-acetyltransferase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
| >d2ae6a1 d.108.1.1 (A:1-161) Putative acetyltransferase EF0244 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d2euia1 d.108.1.1 (A:1-153) Probable acetyltransferase PA4026 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1qsma_ d.108.1.1 (A:) Histone acetyltransferase HPA2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1p0ha_ d.108.1.1 (A:) Mycothiol synthase MshD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1ro5a_ d.108.1.3 (A:) Autoinducer synthesis protein LasI {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2ge3a1 d.108.1.1 (A:6-169) Probable acetyltransferase Atu2290 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
| >d1sqha_ d.108.1.5 (A:) Hypothetical protein cg14615-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d2aj6a1 d.108.1.1 (A:1-118) Hypothetical protein MW0638 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1r57a_ d.108.1.1 (A:) Hypothetical protein SA2309 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nsla_ d.108.1.1 (A:) Probable acetyltransferase YdaF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1yrea1 d.108.1.1 (A:11-193) Hypothetical protein PA3270 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1s7ka1 d.108.1.1 (A:3-176) L7/L12-Ribosomal-protein-serine acetyltransferase RimL {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2fcka1 d.108.1.1 (A:1-178) Putative ribosomal-protein-serine acetyltransferase VC1889 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
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| >d1yk3a1 d.108.1.1 (A:10-207) Hypothetical protein Rv1347c/MT1389 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
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| >d1kzfa_ d.108.1.3 (A:) Acyl-homoserinelactone synthase EsaI {Pantoea stewartii subsp. stewartii [TaxId: 66271]} | Back information, alignment and structure |
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| >d1p0ha_ d.108.1.1 (A:) Mycothiol synthase MshD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d2fsra1 d.108.1.1 (A:4-167) Probable acetyltranferase Atu2435 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
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| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
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| >d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2buda1 b.34.13.3 (A:367-454) Putative histone acetyltransferase MOF {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1wjqa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1oz2a3 b.34.9.3 (A:422-527) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
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| >d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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