Citrus Sinensis ID: 000792

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280--

MGGYDSGSASKDGRDEDDEEEYEDVSGGNRLLGFMFGNVDYAGDLDVDYLDEDAKEHLAAVADKLGPSLTDIDVWNSQSCFQLFCSYCLLSVNSPQPPVDAVEQDYDKKAEDAVDYEDIDEQYEGPEIQIASEEDYLLPKKEYFAAEVSLAALKPTASPFDDENYDEDEELEKEHEEVDKETEDTTTILSGEQVECATAVPDGEKSPEGDPQVGSLGAEEEMTAGVKDYDEELADILKGPLDGQVSTPLPVLCVEDGKVILRFSEIFGIHEPLKKGKKRDQRYSTPKDKYNTMDVSSLVEEDEEVYLKGSGQGFPLFKEANIFQHGIFSLNDDDSELVKFGVEQDAATISEHDEQRKDSCICSEPMKEESNVNPSVGWKSMPSPNFFPLDQHDWEENIVWDNSPAASDNSIESHEIAGADVESALMRGIELDTGQNNFHERSTSPNEKDCIVNMQNSPVLSETFGSKSSSDNTSHLFTESRYHPQLLRLESQLDLDNHSHANGIKENVSIKLCQSDAVKRFSKHSLQNRDMMEGSWLDNIIWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGAMIITRSAKPSDFKPAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTKIHLLPRAQKLPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRAAPKASVSSAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQAASGVQLQQQTRGKCQEIWDRQVQSLSAADDDEIGSDSEHSDLDSFAGDLENLLDAEEFEEEESNYDTKHDKVEGVKGLKMRRRPIQVQAEEEIEDEAAEAAELCRLLMDDDEAELKKKKKKTKAQVEGGLSLAKSISGLEIVERLKKANKPAKHIAITVQPNGSHTANEQIKDPKEEESLIAKRNLSGKVQAMKKNNVQGEKIIKGDFCLWSLWSAWTHEDQQKLPQI

ccccccccccccccccccHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccHHHHHHHHHHHHccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccHHHHHHccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHcccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHcccccHHccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccEEEEccccccccccccccccccccccEEEccccccccccccccccccEEEEEcccccccccccccccccEEEEEcccccEEEEccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccHHHHHHHHHHHHHHHHcccccccEEEcccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHccccccccccccEEEEEccccccccHHHHHHHHHHccccccccccHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccc

ccccccccccccccccccHHHHcHccccccEEEEEEccccccccccHHHccHHHHHHHHHHHHHcccccccccccccccHHHHHccccccccccccccccHHHHcHHHHHHHcccHccccHHccccccEEEcHHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccHHHccHHHcccccccccccccEEEEccccEEEEEEHHccccccccccccccccccccccccccccHHHHHHHcHHHHHHccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccHHHcccccHHHccccccccccccccccHHHHEEEcccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccEEEccccccccccccccccccccccccHHccccccccccccccccccHHHHHHHcccHHHccccccccccHHHHcccHHHHcEccccccccccEEEEccccccEEEEEccccccccccccccccEEccccccccccccHHHHEHEcccEccccccHHHcccccccEEEEEEEEEEccccHcccccccccccccHHHccccccccccccEEEEEEcccccHHHHcccHHHHHHHHHEccccccccccccccccccccEEEEEcccccccccccccccccHHHHHHccEcccccccccccccEEEEEccccEEEEEEcccEEEEcccccEEEccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEHHHHHHHcccccHHHHHHHHHHHHHHccccccccEEEEccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccHHccccccccHHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEccccccccccccEEEEEEccccccccccccccHccccccccEccccHHHHHccHHHHHHHHHHccccHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccccHHcccccccccccccccccHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEccccccccHHHcccHHHHHHHHHHHccccHHHHEHHHcccccEEEEccEHHHHHHHHHHHHHHcccccc

mggydsgsaskdgrdeddeeeyedvsggnrllgfmfgnvdyagdldvdylDEDAKEHLAAVADklgpsltdidvwnsqscFQLFCSYCllsvnspqppvdaveqdydkkaedavdyedideqyegpeiqiaseedyllpkkeYFAAEVSLAalkptaspfddenydedeELEKEHEevdketedttTILSGEQvecatavpdgekspegdpqvgslgaeeemtagvKDYDEELADIlkgpldgqvstplpvlcveDGKVILRFSEifgiheplkkgkkrdqrystpkdkyntmdvsslveedeevylkgsgqgfplfkeanifqhgifslndddseLVKFGVeqdaatisehdeqrkdscicsepmkeesnvnpsvgwksmpspnffpldqhdweenivwdnspaasdnsiesheiAGADVESALMRGIeldtgqnnfherstspnekdcivnmqnspvlsetfgsksssdntshlftesryhpqllrlesqldldnhshangikenvsikLCQSDAVKRfskhslqnrdmmegswldniiwepvdavgkpklilDLQDEQMLFEILdnkddehpllhAGAMIitrsakpsdfkpaesVKLFYLGkeledhksladqnvrpnsLIHLIRTKIHllpraqklpgenkslrppgafkkksdlsvkdGHVFLMEYCEerplllsnagmgaNLCTYyqksspgdqagallcsgnnclgnvltlepgdkspflgdikagcsqssletnmyrapvfthkvatTDFLLVRSAKGKISIRRIDKVAVVAQqeplmevmspgsknlqtYSINRMLVNVYREFSAAAKRgllpcigvdelsvqfpnLSEAIIRKKLKECAFlrrdgngkqvwsmkrtfhipsegdlrklaypehvcsYESMQAGLYRLkhlgitqltlpaSISSAMSQLPDEAIALAAASHIERelqitpwnlssnfvactnqdrenierleitgvgdpsgrglgfsyvraapkasvSSAMVKKKAaanrggstvtgtdaDLRRLSMEAAREVLLKfnvpeemiAKQTRWHRIAMIRKLSSEQAASGVQLQQQTRGKCQEIWDRQVQSlsaadddeigsdsehsdldsFAGDLENlldaeefeeeesnydtkhdkvegvkglkmrrrpiqvqAEEEIEDEAAEAAELCRLLMDDDEAELKKKKKKTKAQVEGGLSLAKSISGLEIVERLKKAnkpakhiaitvqpngshtaneqikdpkeeESLIAKRNLSGKVQAMKKNNvqgekiikgdfCLWSLwsawthedqqklpqi

mggydsgsaskdgrdeddeeEYEDVSGGNRLLGFMFGNVDYAGDLDVDYLDEDAKEHLAAVADKLGPSLTDIDVWNSQSCFQLFCSYCLLSVNSPQPPVDAVEQDYDKKAEDAVDYEDIDEQYEGPEIQIASEEDYLLPKKEYFAAEVSLAAlkptaspfddeNYDEDEELekeheevdketedtttilsgeQVECATavpdgekspegdpqvgslGAEEEMTAGVKDYDEELADILKGPLDGQVSTPLPVLCVEDGKVILRFSeifgiheplkkgkkrdqrystpkdkyntmdvsslvEEDEEVYLKGSGQGFPLFKEANIFQHGIFSLNDDDSELVKFGVEQDAatisehdeqrkdscicsepmkeesnvnpsvgwKSMPSPNFFPLDQHDWEENIVWDNSPAASDNSIESHEIAGADVESALMRGIELDTGQNNFHERSTSPNEKDCIVNMQNSPVLSETFGSKSSSDNTSHLFTESRYHPQLLRLESQLDLDNHSHAngikenvsiklcqSDAVKRFSkhslqnrdmmegSWLDNIIWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGAMIItrsakpsdfkPAESVKLFYLGKELEdhksladqnvrpNSLIHLIRTKIHllpraqklpgenkslrppgafkkksdlsVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRsakgkisirriDKVAVVAqqeplmevmspgsknlqTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFlrrdgngkqvwsmkrtfhipsegdlrklAYPEHVCSYESMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLeitgvgdpsgrGLGFSYVRAAPKASVSSAMVkkkaaanrggstvtgtdadlrRLSMEAAREVllkfnvpeemiaKQTRWHRIAMIRKLSSEQAASGVQLQQQTRGKCQEIWDRQVQSLSAADDDEIGSDSEHSDLDSFAGDLENLLDAEEFeeeesnydtkhdkvegvkglkmrrrpIQVQAEEEIEDEAAEAAELCRLLMDDDEAELKkkkkktkaqvegglslaksisglEIVERLKKANKPAKHiaitvqpngshtaneqikdpkeEESLIAKRNLSGKVQAMKKNNVQGEKIIKGDFCLWSLWSAwthedqqklpqi

MGGYDSGSASKdgrdeddeeeyedVSGGNRLLGFMFGNVDYAGDLDVDYLDEDAKEHLAAVADKLGPSLTDIDVWNSQSCFQLFCSYCLLSVNSPQPPVDAVEQDYDKKAEDAVDYEDIDEQYEGPEIQIASEEDYLLPKKEYFAAEVSLAALKPTASPFddenydedeelekeheevdketedtttILSGEQVECATAVPDGEKSPEGDPQVGSLGAEEEMTAGVKDYDEELADILKGPLDGQVSTPLPVLCVEDGKVILRFSEIFGIHEPLKKGKKRDQRYSTPKDKYNTMdvsslveedeevYLKGSGQGFPLFKEANIFQHGIFSLNDDDSELVKFGVEQDAATISEHDEQRKDSCICSEPMKEESNVNPSVGWKSMPSPNFFPLDQHDWEENIVWDNSPAASDNSIESHEIAGADVESALMRGIELDTGQNNFHERSTSPNEKDCIVNMQNSPVLSETFGSKSSSDNTSHLFTESRYHPQLLRLESQLDLDNHSHANGIKENVSIKLCQSDAVKRFSKHSLQNRDMMEGSWLDNIIWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGAMIITRSAKPSDFKPAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTKIHLLPRAQKLPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRaapkasvssamvkkkaaaNRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQAASGVQLQQQTRGKCQEIWDRQVQSLSAADDDEIGSDSEHSDLDSFAGDlenlldaeefeeeeSNYDTKHDKVEGVKGLKMRRRPIQVQaeeeiedeaaeaaeLCRLLMDDDEAELkkkkkktkAQVEGGLSLAKSISGLEIVERLKKANKPAKHIAITVQPNGSHTANEQIKDPKEEESLIAKRNLSGKVQAMKKNNVQGEKIIKGDFCLWSLWSAWTHEDQQKLPQI

***************************GNRLLGFMFGNVDYAGDLDVDYLDEDAKEHLAAVADKLGPSLTDIDVWNSQSCFQLFCSYCLLSVN**********************************IQIASEEDYLLPKKEYFAAEVSLA********************************************************************************ELADILKGPLDGQVSTPLPVLCVEDGKVILRFSEIFGIHE********************************EVYLKGSGQGFPLFKEANIFQHGIFSLNDDDSELVKFGV*******************************************FFPLDQHDWEENIVWD******************************************************************************************************IKENVSIKLCQSDAVKRF********DMMEGSWLDNIIWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGAMIITR***********SVKLFYLGKELE********NVRPNSLIHLIRTKIHLLP*************************VKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEV*****KNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVG*****GLGFSYV****************************************AREVLLKFNVPEEMIAKQTRWHRIAMIRK************************************************************************************************************************************************************************************************************QGEKIIKGDFCLWSLWSAWTH*********

******************************LLGFMFGNVDYAGDLDVDYLDEDAKE****************************************************************************************************************************************************************************************************CVEDGKVIL************************************LVEED*****************************************************************************SMPSPNFFPLDQHDWEENIVWDNSP*****************************************************************************************************************VKRFSKHSLQNRDMMEGSWLDNIIWEPVDAVGKPKLILDLQDEQMLF************************************LFY***************VRPNSLIHLIRT***************************SDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYY******************CLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSA************DELSVQFPNLSE***RKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLP********************SHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSY**************************************************VPEEMIAKQTRWHRIA*************************EIWDR**************************************************************************************************************************************************************************************IIKGDFCLWSLWSAWTHED**K****

*************************SGGNRLLGFMFGNVDYAGDLDVDYLDEDAKEHLAAVADKLGPSLTDIDVWNSQSCFQLFCSYCLLSVNSPQPPVDAVEQDYDKKAEDAVDYEDIDEQYEGPEIQIASEEDYLLPKKEYFAAEVSLAALKPTASPFDD************************TILSGEQVECATA****************LGAEEEMTAGVKDYDEELADILKGPLDGQVSTPLPVLCVEDGKVILRFSEIFGIHEPL***********TPKDKYNTMDVSSLVEEDEEVYLKGSGQGFPLFKEANIFQHGIFSLNDDDSELVKFGVEQDAATI*********SCICSEPM********SVGWKSMPSPNFFPLDQHDWEENIVWDNSPAASDNSIESHEIAGADVESALMRGIELDTGQNNFHERSTSPNEKDCIVNMQNSPVL**************HLFTESRYHPQLLRLESQLDLDNHSHANGIKENVSIKLCQSDAVKRFSKHSLQNRDMMEGSWLDNIIWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGAMIITRSAKPSDFKPAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTKIHLLPRAQKLPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRAA**********************VTGTDADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSS***************KCQEIWDRQVQSL***************DLDSFAGDLENLLDAEE**********KHDKVEGVKGLKMRRRPIQVQAEEEIEDEAAEAAELCRLLMDDDEA**************GGLSLAKSISGLEIVERLKKANKPAKHIAITVQPNGSHTANEQIKDPKEEESLIAKRNLSGKVQAMKKNNVQGEKIIKGDFCLWSLWSAWTH*********

*******************EEY**VSGGNRLLGFMFGNVDYAGDLDVDYLDEDAKEHLAAVADKLGPSLTDID***************************A*EQDYDKKAEDAVDYEDIDEQYEGPEIQIASEEDYLLPKKEYFAAEVSLAAL********************************************************************************************STPLPVLCVEDGKVILRFSEIFGIHEPLK**********TPKDKYNTMDVSSLVEEDEEVYLKGSGQGFPLFKEANIFQHGIFSL****************************SC*CSEPMKEESNVNPSVGWKSMPSPNFFPLDQHDWEENIVWDNSPA********************MRGIEL***QN***************VNMQNSPVL*****SK***************************L***S**NGIKENVSIKLCQSDAVKRFSKHSLQNRDMMEGSWLDNIIWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGAMIITRSAKPSDFKPAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTKIHLLPRAQKLPG*NKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTL************DEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRAAPKASV******************TGTDADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQAASGVQLQQQTRGKCQEIWDRQVQSLS**************DLDS*A*DL**LLDA*************************************IEDEAAEAAELCRLLMDDDE*ELK************************I********KPAKHIAITVQPNGSHTANEQIKDPKEEESLIAKRNLSGKVQAMKKNNVQGEKIIKGDFCLWSLWSAWTHEDQQKLP**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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MGGYDSGSASKDGRDEDDEEEYEDVSGGNRLLGFMFGNVDYAGDLDVDYLDEDAKEHLAAVADKLGPSLTDIDVWNSQSCFQLFCSYCLLSVNSPQPPVDAVEQDYDKKAEDAVDYEDIDEQYEGPEIQIASEEDYLLPKKEYFAAEVSLAALKPTASPFDDENYDEDEELEKEHEEVDKETEDTTTILSGEQVECATAVPDGEKSPEGDPQVGSLGAEEEMTAGVKDYDEELADILKGPLDGQVSTPLPVLCVEDGKVILRFSEIFGIHEPLKKGKKRDQRYSTPKDKYNTMDVSSLVEEDEEVYLKGSGQGFPLFKEANIFQHGIFSLNDDDSELVKFGVEQDAATISEHDEQRKDSCICSEPMKEESNVNPSVGWKSMPSPNFFPLDQHDWEENIVWDNSPAASDNSIESHEIAGADVESALMRGIELDTGQNNFHERSTSPNEKDCIVNMQNSPVLSETFGSKSSSDNTSHLFTESRYHPQLLRLESQLDLDNHSHANGIKENVSIKLCQSDAVKRFSKHSLQNRDMMEGSWLDNIIWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGAMIITRSAKPSDFKPAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTKIHLLPRAQKLPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRAAPKASVSSAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQAASGVQLQQQTRGKCQEIWDRQVQSLSAADDDEIGSDSEHSDLDSFAGDLENLLDAEEFEEEESNYDTKHDKVEGVKGLKMRRRPIxxxxxxxxxxxxxxxxxxxxxLMDDDEAELKKKKKKTKAQVEGGLSLAKSISGLEIVERLKKANKPAKHIAITVQPNGSHTANEQIKDPKEEESLIAKRNLSGKVQAMKKNNVQGEKIIKGDFCLWSLWSAWTHEDQQKLPQI

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1282	2.2.26 [Sep-21-2011]
Q8LRK9		1919	Transcription initiation	yes	no	0.511	0.341	0.670	0.0
Q67W65		1810	Transcription initiation	yes	no	0.459	0.325	0.655	0.0
Q6PUA2		1786	Transcription initiation	no	no	0.445	0.319	0.666	0.0
Q54DH8		2310	Transcription initiation	yes	no	0.321	0.178	0.363	7e-70
P21675		1872	Transcription initiation	yes	no	0.332	0.227	0.351	1e-67
Q60544		1865	Transcription initiation	N/A	no	0.328	0.225	0.355	2e-67
Q80UV9		1891	Transcription initiation	yes	no	0.328	0.222	0.353	4e-67
Q8IZX4		1826	Transcription initiation	no	no	0.335	0.235	0.353	1e-66
P51123		2129	Transcription initiation	yes	no	0.312	0.188	0.332	5e-64
Q09813		979	Putative transcription in	yes	no	0.232	0.304	0.306	3e-38

>sp\|Q8LRK9\|TAF1A_ARATH Transcription initiation factor TFIID subunit 1-A OS=Arabidopsis thaliana GN=HAF1 PE=2 SV=1	Back alignment and function desciption

 Score =  863 bits (2231), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/685 (67%), Positives = 534/685 (77%), Gaps = 29/685 (4%)

Query: 577  LHAG-----AMIITRSAKPSDFKPAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTK 631
            LH G     + +  ++++  DFK  E+VK+FY GKEL+D KSLA QNV+PNSL+HLIRTK
Sbjct: 675  LHVGIEESVSSLRAKASRKLDFKETEAVKMFYKGKELDDEKSLAAQNVQPNSLVHLIRTK 734

Query: 632  IHLLPRAQKLPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCT 691
            +HL P AQKLPGENKSLRPPGAFKKKSDLS KDGHVFLMEYCEERPL+LSNAGMGANLCT
Sbjct: 735  VHLWPWAQKLPGENKSLRPPGAFKKKSDLSTKDGHVFLMEYCEERPLMLSNAGMGANLCT 794

Query: 692  YYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFT 751
            YYQKSSP DQ G LL + ++ LGNV+ LEPGDKSPFLG+I AGCSQSS+ETNMY+AP+F 
Sbjct: 795  YYQKSSPEDQRGNLLRNQSDTLGNVMILEPGDKSPFLGEIHAGCSQSSVETNMYKAPIFP 854

Query: 752  HKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYR 811
             ++ +TD+LLVRS KGK+S+RRIDK+ VV QQEP MEVMSPGSKNLQTY +NRMLV VYR
Sbjct: 855  QRLQSTDYLLVRSPKGKLSLRRIDKIVVVGQQEPRMEVMSPGSKNLQTYLVNRMLVYVYR 914

Query: 812  EFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIP 871
            EF    + G    I  DELS  F NL++AII+K +K  A  +RD NG+  W+ K +   P
Sbjct: 915  EF--FKRGGGEHPIAADELSFLFSNLTDAIIKKNMKIIACWKRDKNGQSYWTKKDSLLEP 972

Query: 872  SEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASH 931
             E +L+KL  PEHVCSYESM AGLYRLKHLGIT+ TLPASIS+A++QLPDEAIALAAASH
Sbjct: 973  PESELKKLVAPEHVCSYESMLAGLYRLKHLGITRFTLPASISNALAQLPDEAIALAAASH 1032

Query: 932  IERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRAAPKASVSSAM 991
            IERELQITPWNLSSNFVACTNQDR NIERLEITGVGDPSGRGLGFSYVRAAPKA  ++  
Sbjct: 1033 IERELQITPWNLSSNFVACTNQDRANIERLEITGVGDPSGRGLGFSYVRAAPKAPAAAGH 1092

Query: 992  VKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSS 1051
            +KKKAAA RG  TVTGTDADLRRLSMEAAREVL+KFNVP+E+IAKQTRWHRIAMIRKLSS
Sbjct: 1093 MKKKAAAGRGAPTVTGTDADLRRLSMEAAREVLIKFNVPDEIIAKQTRWHRIAMIRKLSS 1152

Query: 1052 EQAASGV-------------------QLQQQTRGKCQEIWDRQVQSLSAADDDEIGSDSE 1092
            EQAASGV                   Q+QQQ R KCQEIWDRQ+ SLSA D DE  S++E
Sbjct: 1153 EQAASGVKVDPTTIGKYARGQRMSFLQMQQQAREKCQEIWDRQLLSLSAFDGDENESENE 1212

Query: 1093 -HSDLDSFAGDLENLLDAEEFEEEESNYDTKHDKVEGVKGLKMRRRPIQVQAEEEIEDEA 1151
             +SDLDSFAGDLENLLDAEE  E E +  +K+DK++GVKGLKMRRRP QV+ +EEIEDEA
Sbjct: 1213 ANSDLDSFAGDLENLLDAEEGGEGEESNISKNDKLDGVKGLKMRRRPSQVETDEEIEDEA 1272

Query: 1152 AEAAELCRLLMDDDEAELKKKKKKTKAQVEGGLSLAKSISGLEIVERLKKANKPAKHIAI 1211
             E AELCRLLM D++ + KKKK K   +  G     +    L+  E ++KAN   K   I
Sbjct: 1273 TEYAELCRLLMQDEDQKKKKKKMKGVGEGMGSYPPPRPNIALQSGEPVRKANAMDKK-PI 1331

Query: 1212 TVQPNGSHTANEQ-IKDPKEEESLI 1235
             +QP+ S   NE  IKD +  +S+I
Sbjct: 1332 AIQPDASFLVNESTIKDNRNVDSII 1356

Largest component and core scaffold of the TFIID basal transcription factor complex.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q67W65\|TAF1_ORYSJ Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica GN=TAF1 PE=2 SV=1	Back alignment and function description

>sp\|Q6PUA2\|TAF1B_ARATH Transcription initiation factor TFIID subunit 1-B OS=Arabidopsis thaliana GN=HAF2 PE=2 SV=1	Back alignment and function description

>sp\|Q54DH8\|TAF1_DICDI Transcription initiation factor TFIID subunit 1 OS=Dictyostelium discoideum GN=taf1 PE=3 SV=1	Back alignment and function description

>sp\|P21675\|TAF1_HUMAN Transcription initiation factor TFIID subunit 1 OS=Homo sapiens GN=TAF1 PE=1 SV=2	Back alignment and function description

>sp\|Q60544\|TAF1_MESAU Transcription initiation factor TFIID subunit 1 OS=Mesocricetus auratus GN=TAF1 PE=2 SV=1	Back alignment and function description

>sp\|Q80UV9\|TAF1_MOUSE Transcription initiation factor TFIID subunit 1 OS=Mus musculus GN=Taf1 PE=2 SV=2	Back alignment and function description

>sp\|Q8IZX4\|TAF1L_HUMAN Transcription initiation factor TFIID subunit 1-like OS=Homo sapiens GN=TAF1L PE=1 SV=1	Back alignment and function description

>sp\|P51123\|TAF1_DROME Transcription initiation factor TFIID subunit 1 OS=Drosophila melanogaster GN=Taf1 PE=1 SV=3	Back alignment and function description

>sp\|Q09813\|T111_SCHPO Putative transcription initiation factor TFIID 111 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2G11.14 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1282
302143274		1798	unnamed protein product [Vitis vinifera]	0.932	0.665	0.594	0.0
449475476		1734	PREDICTED: LOW QUALITY PROTEIN: transcri	0.879	0.649	0.506	0.0
359485367		2068	PREDICTED: transcription initiation fact	0.519	0.322	0.728	0.0
255563246		1885	transcription initiation factor tfiid, p	0.516	0.351	0.738	0.0
224093308		1851	histone acetyltransferase [Populus trich	0.507	0.351	0.715	0.0
224140747		1857	histone acetyltransferase [Populus trich	0.496	0.342	0.727	0.0
356529777		1910	PREDICTED: transcription initiation fact	0.517	0.347	0.684	0.0
15223289		1919	transcription initiation factor TFIID su	0.511	0.341	0.670	0.0
356510353		1919	PREDICTED: transcription initiation fact	0.517	0.345	0.659	0.0
6714281		1994	F6N18.13 [Arabidopsis thaliana]	0.511	0.328	0.644	0.0

>gi\|302143274\|emb\|CBI21835.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1332 bits (3448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 764/1286 (59%), Positives = 905/1286 (70%), Gaps = 90/1286 (6%)

Query: 35   MFGNVDYAGDLDVDYLDEDAKEHLAAVADKLGPSLTDIDVWNSQSCFQLFCSYCLLSVNS 94
            MFGNVD AGDLD +Y+ +DAKEHLAA+ADKLGPSLTDID                LSV S
Sbjct: 1    MFGNVDGAGDLDYNYVFQDAKEHLAALADKLGPSLTDID----------------LSVKS 44

Query: 95   PQPPVDAVEQDYDKKAEDAVDYEDIDEQYEGPEIQIASEEDYLLPKKEYFAAEVSLAALK 154
            PQ P D  EQDYD+KAEDAV+YEDIDEQYEGPEIQ A+EEDYLL KKEYF+A+VS+A+L 
Sbjct: 45   PQTPADGAEQDYDEKAEDAVNYEDIDEQYEGPEIQAATEEDYLLSKKEYFSADVSVASLD 104

Query: 155  PTASPFDDENYDEDEELEKEHEEVDKETEDTTTILSGEQVECATAVPDGEKSPEGDPQVG 214
             +AS FDD+NYDEDEE EKEHE VD  +E    I SGEQ E  + V +GEKSP+ D   G
Sbjct: 105  HSASVFDDDNYDEDEEFEKEHEVVDNNSE-VQAISSGEQGEHLSVVSEGEKSPDDDLFPG 163

Query: 215  SLGAEEEMTAGVKDYDEELADILKGPLDGQVSTPLPVLCVEDGKVILRFSEIFGIHEPLK 274
             L   E +T  ++D  EE  + L+ P +G+ S PLP+LCVEDG VILRFSEIFGIH PLK
Sbjct: 164  LL-EPENLTGDLEDIPEEEPEGLEEPFEGKRSAPLPILCVEDGMVILRFSEIFGIHGPLK 222

Query: 275  KGKKRDQRYSTPKDKYNTMDVSSLVEEDEEVYLKGSGQGFPLFKEANIFQHGIFSLNDDD 334
            KG+KRD+RY+ PK++Y +MD    VEEDEE +LKG  Q F   K   + Q       +D+
Sbjct: 223  KGEKRDRRYTIPKERYKSMDAPDNVEEDEEAFLKGGCQAFSFTKHKLLTQDDASVFMEDE 282

Query: 335  SELVKFGVEQDAATIS-EHDEQRKDSCICSEPMKEESNVNPSVGWKSMPSPNFFPLDQHD 393
            +EL K GV Q  AT+  ++DEQRK SCI +EPMKE+  V+ S  W S  SP F+PLDQ D
Sbjct: 283  AELKKVGVVQGTATMELQNDEQRKHSCISAEPMKEDMPVDLSEFWLSPLSPKFYPLDQQD 342

Query: 394  WEENIVWDNSPAASDNSIESHEIAGADVESA------------LMRGIELDTGQNNFHER 441
            WE+ I+WDNSP  SDNS ES EI+G D E+             ++ G  +D      H+ 
Sbjct: 343  WEDKIIWDNSPEVSDNSAESCEISGPDSEAIRRFNKLTLQNRDMLEGSWVDRIIWEPHKP 402

Query: 442  STSPNEKDCIVNMQNSPVLSETFGSKSSSDNTSHLFTESRYHPQLLRLESQLDLDNHSHA 501
             + P     I+++Q+  +L E    K   +   H        P        ++L  H   
Sbjct: 403  ISKPK---LILDLQDEQMLFEILDDKDGKNLGLHAGAMLITRPVKSSTGDSIELPVHGGP 459

Query: 502  NGIKENVS-----IKLCQSDAVKRFSK----------HS------------LQNRDMMEG 534
            +G + N++     +    S  +K  SK          HS            L N+D+   
Sbjct: 460  SGGRFNIANDKFYLNRKTSQQLKSHSKKRTAHGVKILHSIPALKLQTMKLKLSNKDIA-N 518

Query: 535  SWLDNIIWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGA-----MIITRSAK 589
                  +W P D     K    L  +  +  IL +   +   LH  A      +  +++K
Sbjct: 519  FHRPKALWYPHDIEMAVKEQGKLPTQGPMKIILKSLGGKGSKLHVDAEETVSSVKLKASK 578

Query: 590  PSDFKPAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTKIHLLPRAQKLPGENKSLR 649
              DFKP+E VK+FY GKELEDHKSLA QNV+PNSL+HL+RTKIHL PRAQKLPGENKSLR
Sbjct: 579  KLDFKPSEMVKIFYTGKELEDHKSLAAQNVQPNSLLHLVRTKIHLWPRAQKLPGENKSLR 638

Query: 650  PPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSG 709
            PPGAFKKKSDLSVKDGHVFLMEYCEERPLLL N GMGA LCTYYQKS+PGD  GA + +G
Sbjct: 639  PPGAFKKKSDLSVKDGHVFLMEYCEERPLLLGNVGMGARLCTYYQKSAPGDHTGAFMRNG 698

Query: 710  NNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKI 769
            N+ LG VLTL+P DKSPFLGDIK GCSQSSLETNMYRAP+F HKV++TD+LLVRSAKGK+
Sbjct: 699  NSSLGTVLTLDPADKSPFLGDIKPGCSQSSLETNMYRAPLFPHKVSSTDYLLVRSAKGKL 758

Query: 770  SIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDE 829
            SIRRID++ VV QQEP MEVMSPG+K LQTY +NR+LV +YREF A  KRG LPCI  DE
Sbjct: 759  SIRRIDRIDVVGQQEPHMEVMSPGTKGLQTYIMNRLLVYMYREFRAGEKRGSLPCIRADE 818

Query: 830  LSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYE 889
            LS QFPN+SE  +RK+LK CA L++  NG   W M+R F IP E +LR++  PE+VC+YE
Sbjct: 819  LSAQFPNISEPFLRKRLKHCADLQKGSNGLLFWVMRRNFRIPLEEELRRMVTPENVCAYE 878

Query: 890  SMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVA 949
            SMQAGLYRLKHLGIT+LTLP  +SSAM+QLP EAIALAAASHIERELQITPWNLSSNFVA
Sbjct: 879  SMQAGLYRLKHLGITRLTLPTGLSSAMNQLPYEAIALAAASHIERELQITPWNLSSNFVA 938

Query: 950  CTNQDRENIERLEITGVGDPSGRGLGFSYVRAAPKASVSSAMVKKKAAANRGGSTVTGTD 1009
            CTNQDRENIERLEITGVGDPSGRGLGFSYVR APKA +S+AMVKKK    RGGSTVTGTD
Sbjct: 939  CTNQDRENIERLEITGVGDPSGRGLGFSYVRTAPKAPISNAMVKKKITVGRGGSTVTGTD 998

Query: 1010 ADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQAASGV----------- 1058
            ADLRRLSMEAAREVLLKFNVPEE+IAKQTRWHRIAMIRKLSSEQAASGV           
Sbjct: 999  ADLRRLSMEAAREVLLKFNVPEELIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYA 1058

Query: 1059 --------QLQQQTRGKCQEIWDRQVQSLSAADDDEIGSDSE-HSDLDSFAGDLENLLDA 1109
                    QLQQQTR KCQEIWDRQVQSLSA D DEI SDSE +SDLDSFAGDLENLLDA
Sbjct: 1059 RGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVDSDEIESDSEANSDLDSFAGDLENLLDA 1118

Query: 1110 EEFEE-EESNYDTKHDKVEGVKGLKMRRRPIQVQAEEEIEDEAAEAAELCRLLMDDDEAE 1168
            EE E+ EE N ++KHD+ +GV+GLKMRRRP Q QAEEEIEDEAAEAAELCR+LMDDDEAE
Sbjct: 1119 EECEDGEEGNCESKHDRTDGVRGLKMRRRPSQAQAEEEIEDEAAEAAELCRMLMDDDEAE 1178

Query: 1169 LKKKKKKTKAQVEGGLSLAKSIS-GLEIVERLKKANKPAKHIAITVQPNGSHTANEQ-IK 1226
             KKKKK      E GL+L   ++ G E  +++KK +   K +   VQP+GS++  E+  +
Sbjct: 1179 RKKKKKTRPVGEEEGLALGSQLNFGFENGQKMKKNSAVVKQLVSKVQPDGSYSQKEKAFR 1238

Query: 1227 DPKEEESLIAKRNLSGKVQAMKKNNV 1252
            D KE ES + KRN+SGK + +KKN+ 
Sbjct: 1239 DSKEVESFLPKRNISGKAKILKKNDA 1264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449475476\|ref\|XP_004154465.1\| PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 1-A-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|359485367\|ref\|XP_002273712.2\| PREDICTED: transcription initiation factor TFIID subunit 1-A-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255563246\|ref\|XP_002522626.1\| transcription initiation factor tfiid, putative [Ricinus communis] gi\|223538102\|gb\|EEF39713.1\| transcription initiation factor tfiid, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224093308\|ref\|XP_002309876.1\| histone acetyltransferase [Populus trichocarpa] gi\|222852779\|gb\|EEE90326.1\| histone acetyltransferase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224140747\|ref\|XP_002323740.1\| histone acetyltransferase [Populus trichocarpa] gi\|222866742\|gb\|EEF03873.1\| histone acetyltransferase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356529777\|ref\|XP_003533464.1\| PREDICTED: transcription initiation factor TFIID subunit 1-A-like [Glycine max]	Back alignment and taxonomy information

>gi|15223289|ref|NP_174552.1| transcription initiation factor TFIID subunit 1-A [Arabidopsis thaliana] gi|75157524|sp|Q8LRK9.1|TAF1A_ARATH RecName: Full=Transcription initiation factor TFIID subunit 1-A; Short=AtTAF1a; AltName: Full=TAFII250-A gi|21105767|gb|AAM34782.1|AF510669_1 HAF1 [Arabidopsis thaliana] gi|332193403|gb|AEE31524.1| transcription initiation factor TFIID subunit 1-A [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|356510353\|ref\|XP_003523903.1\| PREDICTED: transcription initiation factor TFIID subunit 1-A-like [Glycine max]	Back alignment and taxonomy information

>gi\|6714281\|gb\|AAF25977.1\|AC017118_14 F6N18.13 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1282
TAIR\|locus:2035574		1919	HAF01 "AT1G32750" [Arabidopsis	0.535	0.357	0.556	1.2e-253
TAIR\|locus:2085909		1786	HAF2 "AT3G19040" [Arabidopsis	0.575	0.413	0.522	2.9e-251
DICTYBASE\|DDB_G0292242		2310	taf1 "transcription initiation	0.366	0.203	0.338	4.3e-69
MGI\|MGI:1336878		1891	Taf1 "TAF1 RNA polymerase II,	0.259	0.176	0.334	1.6e-68
RGD\|1562050		1902	Taf1 "TAF1 RNA polymerase II,	0.259	0.175	0.334	4.7e-68
UNIPROTKB\|Q60544		1865	TAF1 "Transcription initiation	0.259	0.178	0.337	6e-68
UNIPROTKB\|P21675		1872	TAF1 "Transcription initiation	0.259	0.177	0.337	1e-67
UNIPROTKB\|B1Q2X3		1895	N-TAF1 "TAF1 RNA polymerase II	0.259	0.175	0.337	1.1e-67
UNIPROTKB\|F1MF62		1882	TAF1 "Uncharacterized protein"	0.259	0.176	0.337	1.3e-67
ZFIN\|ZDB-GENE-030131-5576		1947	taf1 "TAF1 RNA polymerase II,	0.258	0.170	0.332	1.5e-67

TAIR\|locus:2035574 HAF01 "AT1G32750" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1795 (636.9 bits), Expect = 1.2e-253, Sum P(3) = 1.2e-253
 Identities = 407/731 (55%), Positives = 493/731 (67%)

Query:   389 LDQHDWEENIVWDNSPAASDNSIESHEIAGADVESALMRGIELDTGQN-NFHERSTSPNE 447
             L    W ++I+WD+    S + +    I     E  +    + +  +N   H  +     
Sbjct:   502 LGDEAWLDSIIWDSEKELSRSKL----IFDLQDEQMVFEIFDNEESKNLQLHAGAM---- 553

Query:   448 KDCIVNMQNSPVLSETF--GSKSSSDNTSHLFTESRYHPQLLRLESQLDLDNHSHANGIK 505
                IV+ ++S    ETF  G +S+S    +L  +  Y    +  +S   L     AN  K
Sbjct:   554 ---IVS-RSSKSKDETFQEGCESNSGWQFNLSNDKFY----MNGKSSQQLQ----ANTNK 601

Query:   506 ENV-SIKLCQS-DAVK-RFSKHSLQNRDMMEGSWLDNIIWEPVD---AVGKPKLILDLQD 559
              +V S+++  S  A+K +  K  L N+D+         +W P D   A+ +   +     
Sbjct:   602 SSVHSLRVFHSVPAIKLQTMKSKLSNKDIANFH-RPKALWYPHDNELAIKQQGKLPTRGS 660

Query:   560 EQMLFEILDNKDDEHPLLHAGA--MIITRSAKPS---DFKPAESVKLFYLGKELEDHKSL 614
              +++ + L  K  +   LH G    + +  AK S   DFK  E+VK+FY GKEL+D KSL
Sbjct:   661 MKIIVKSLGGKGSK---LHVGIEESVSSLRAKASRKLDFKETEAVKMFYKGKELDDEKSL 717

Query:   615 ADQNVRPNSLIHLIRTKIHLLPRAQKLPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCE 674
             A QNV+PNSL+HLIRTK+HL P AQKLPGENKSLRPPGAFKKKSDLS KDGHVFLMEYCE
Sbjct:   718 AAQNVQPNSLVHLIRTKVHLWPWAQKLPGENKSLRPPGAFKKKSDLSTKDGHVFLMEYCE 777

Query:   675 ERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAG 734
             ERPL+LSNAGMGANLCTYYQKSSP DQ G LL + ++ LGNV+ LEPGDKSPFLG+I AG
Sbjct:   778 ERPLMLSNAGMGANLCTYYQKSSPEDQRGNLLRNQSDTLGNVMILEPGDKSPFLGEIHAG 837

Query:   735 CSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGS 794
             CSQSS+ETNMY+AP+F  ++ +TD+LLVRS KGK+S+RRIDK+ VV QQEP MEVMSPGS
Sbjct:   838 CSQSSVETNMYKAPIFPQRLQSTDYLLVRSPKGKLSLRRIDKIVVVGQQEPRMEVMSPGS 897

Query:   795 KNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRR 854
             KNLQTY +NRMLV VYREF      G  P I  DELS  F NL++AII+K +K  A  +R
Sbjct:   898 KNLQTYLVNRMLVYVYREFFKRGG-GEHP-IAADELSFLFSNLTDAIIKKNMKIIACWKR 955

Query:   855 DGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLPASISS 914
             D NG+  W+ K +   P E +L+KL  PEHVCSYESM AGLYRLKHLGIT+ TLPASIS+
Sbjct:   956 DKNGQSYWTKKDSLLEPPESELKKLVAPEHVCSYESMLAGLYRLKHLGITRFTLPASISN 1015

Query:   915 AMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGL 974
             A++QLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDR NIERLEITGVGDPSGRGL
Sbjct:  1016 ALAQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRANIERLEITGVGDPSGRGL 1075

Query:   975 GFSYVRXXXXXXXXXXXXXXXXXXNRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEMI 1034
             GFSYVR                   RG  TVTGTDADLRRLSMEAAREVL+KFNVP+E+I
Sbjct:  1076 GFSYVRAAPKAPAAAGHMKKKAAAGRGAPTVTGTDADLRRLSMEAAREVLIKFNVPDEII 1135

Query:  1035 AKQTRWHRIAMIRKLSSEQAASGVQLQQQTRGKC---QEIWDRQVQSLSAADDDEIGSDS 1091
             AKQTRWHRIAMIRKLSSEQAASGV++   T GK    Q +   Q+Q  +     EI  D 
Sbjct:  1136 AKQTRWHRIAMIRKLSSEQAASGVKVDPTTIGKYARGQRMSFLQMQQQAREKCQEIW-DR 1194

Query:  1092 EHSDLDSFAGD 1102
             +   L +F GD
Sbjct:  1195 QLLSLSAFDGD 1205

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0004402 "histone acetyltransferase activity" evidence=ISS

GO:0009294 "DNA mediated transformation" evidence=IMP

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA

TAIR\|locus:2085909 HAF2 "AT3G19040" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0292242 taf1 "transcription initiation factor TFIID subunit 1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

MGI\|MGI:1336878 Taf1 "TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1562050 Taf1 "TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q60544 TAF1 "Transcription initiation factor TFIID subunit 1" [Mesocricetus auratus (taxid:10036)]	Back alignment and assigned GO terms

UNIPROTKB\|P21675 TAF1 "Transcription initiation factor TFIID subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|B1Q2X3 N-TAF1 "TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, neuron specific isoform" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MF62 TAF1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-5576 taf1 "TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1282
pfam12157		457	pfam12157, DUF3591, Protein of unknown function (D	1e-85
COG5179		968	COG5179, TAF1, Transcription initiation factor TFI	4e-49
pfam09247		62	pfam09247, TBP-binding, TATA box-binding protein b	4e-09
pfam00240		69	pfam00240, ubiquitin, Ubiquitin family	3e-05
cd01769		69	cd01769, UBL, Ubiquitin-like domain of UBL	3e-05
smart00213		72	smart00213, UBQ, Ubiquitin homologues	4e-05

>gnl\|CDD\|221445 pfam12157, DUF3591, Protein of unknown function (DUF3591)	Back alignment and domain information

 Score =  286 bits (734), Expect = 1e-85
 Identities = 136/435 (31%), Positives = 203/435 (46%), Gaps = 45/435 (10%)

Query: 618  NVRPNSLIHLIRTKIHLLPRAQKLPGENKSLRPPGAFKKKSDLSVKD-GHVFLMEYCEER 676
            N RP   I    +K+    +      + K +     FK   DL++ D   + L+EY EE 
Sbjct: 61   NFRPGLQIVF--SKLKHRKKKHD---KGKDISE--LFKTTKDLTLGDTSPLILLEYSEEY 113

Query: 677  PLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPF--LGDIKAG 734
            P +LSN GMG+ +  YY+K    D     L  G   +     L P DKSPF   G ++ G
Sbjct: 114  PPVLSNFGMGSKIINYYRKKDEEDTPRPKLEIGETHV-----LGPQDKSPFWNFGFVEPG 168

Query: 735  CSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKIS----IRRIDKVAVVAQQEPLMEVM 790
                +L  NM+RAPVF HK   TDFLL+RS  G       +R ID + VV Q  P++EV 
Sbjct: 169  EVVPTLYNNMFRAPVFKHKPEPTDFLLIRSTTGGSGSKYYLRNIDHLFVVGQTFPVVEVP 228

Query: 791  SPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECA 850
             P S+ +   S NR+ + VYR    + +R     I VD+++  FP+ +E   R++LKE  
Sbjct: 229  GPHSRKVTNASKNRLKMIVYRLLRKSGRRR----ISVDDITKHFPDQNEMQNRQRLKEFM 284

Query: 851  FLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLPA 910
              +R+G  +  W +K    +P E ++R +  PE VC YESMQ G   L+  G        
Sbjct: 285  KYQREGGDQGYWKLKEGETLPDEEEIRAMITPEDVCLYESMQVGQQHLEDAGYNNT---- 340

Query: 911  SISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPS 970
                 +    DE         I+ E ++ PWN + NF+  T         L++ G GDP+
Sbjct: 341  -----IESKRDED---EGEEKIDLEEKLAPWNTTRNFINATQGK----AMLQLHGEGDPT 388

Query: 971  GRGLGFSYVRAAPKASVSSAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVP 1030
            G G GFS++R + K     +    +    +    V GT A LR        +    +   
Sbjct: 389  GCGEGFSFLRTSMKGGFLKS---GEGPEAKPKKAVAGTKAKLRGGHSYNVAQQQRLY--- 442

Query: 1031 EEMIAKQTRWHRIAM 1045
            EE I +  RW ++++
Sbjct: 443  EEEIRRIWRWQKVSL 457

This domain is found in eukaryotes and is typically between 445 to 462 amino acids in length. Most members are annotated as being transcription initiation factor TFIID subunit 1, and this region is the conserved central portion of these proteins. Length = 457

>gnl\|CDD\|227506 COG5179, TAF1, Transcription initiation factor TFIID, subunit TAF1 [Transcription]	Back alignment and domain information

>gnl\|CDD\|150052 pfam09247, TBP-binding, TATA box-binding protein binding	Back alignment and domain information

>gnl\|CDD\|215813 pfam00240, ubiquitin, Ubiquitin family	Back alignment and domain information

>gnl\|CDD\|176364 cd01769, UBL, Ubiquitin-like domain of UBL	Back alignment and domain information

>gnl\|CDD\|214563 smart00213, UBQ, Ubiquitin homologues	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1282
KOG0008		1563	consensus Transcription initiation factor TFIID, s	100.0
PF12157		457	DUF3591: Protein of unknown function (DUF3591); In	100.0
COG5179		968	TAF1 Transcription initiation factor TFIID, subuni	100.0
PF09247		62	TBP-binding: TATA box-binding protein binding; Int	99.5
PF02270		275	TFIIF_beta: Transcription initiation factor IIF, b	92.01

>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]	Back alignment and domain information

Probab=100.00  E-value=3.5e-172  Score=1535.23  Aligned_cols=985  Identities=36%  Similarity=0.454  Sum_probs=783.2

Q ss_pred             CCCCchhhhhcccCCcchHHhhh-hcCCCCCCCCCCcceEEeeCCeEEEEehhhhccccccccCCcccccccCCcccccC
Q 000792          214 GSLGAEEEMTAGVKDYDEELADI-LKGPLDGQVSTPLPVLCVEDGKVILRFSEIFGIHEPLKKGKKRDQRYSTPKDKYNT  292 (1282)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lp~l~~e~g~~il~fseif~~~ep~~~~~~~~~~~~~~~~~~~~  292 (1282)
                      .++..++.|+  +.|++++..++ .-.+++-+..+|||. ++|+   | +|||+|.+|+|. ++.++.-++..++|.|++
T Consensus        15 ~v~~~ed~~d--~~dl~e~~e~~~~~~~~~~~s~~~l~~-~~~~---~-~~s~d~~~~~P~-~~~~~e~~~~~~~D~~~s   86 (1563)
T KOG0008|consen   15 SVLVKEDAMD--YSDLQEESEDEPAEFTLEFGSLTPLPT-YGDE---A-QFSEDFALMEPP-KRDMREDEYIGSRDKYIS   86 (1563)
T ss_pred             cccccccccc--chhhhhhhhcccccccccccCcccCcc-cchh---h-hcchhhhhcCCC-CCCchhhccccccCcccc
Confidence            4566788888  99999999888 778888889999999 9999   4 999999999999 888889999999999999


Q ss_pred             CCcccccchhHHHHhhh-cCCCcccccccccccccccccCccchhhhhhcccc---cccccchhhhccccccccCccccc
Q 000792          293 MDVSSLVEEDEEVYLKG-SGQGFPLFKEANIFQHGIFSLNDDDSELVKFGVEQ---DAATISEHDEQRKDSCICSEPMKE  368 (1282)
Q Consensus       293 ~~~~~~ve~dee~~lk~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~s~~~~~p~~~  368 (1282)
                      +|.+..+++||+..||+ +++..+-.+.+.-.+.++.....+.....+-|++.   ..+....+..--++||+...-.+.
T Consensus        87 ed~~~~~~~~e~t~l~d~d~~~dt~l~~I~~~~ld~~~Pvre~~~d~~~~~vl~~~~~~p~~~f~~~~r~s~~~~~~~~~  166 (1563)
T KOG0008|consen   87 EDSSSLSGPDEETDLKDDDGKLDTPLSGIDSIDLDVPLPVRELFPDFRPSKVLRSRLFGPNKEFMGLWRDSRIMRKKLKQ  166 (1563)
T ss_pred             cccccccCcchhhhhhhhccccCCchhhcccccccCCCchhhhccccCccceeccCCCCccchhhhhhHHHHhhhHhhhh
Confidence            99999999999999999 88877666677766666653322322223333332   222223888889999999999999


Q ss_pred             cccCCCCcCcCCCCCCCcccCCccccccccccCCCccCcCCccccccccccc---hhhhhhcCcc--cccCCCCccc--c
Q 000792          369 ESNVNPSVGWKSMPSPNFFPLDQHDWEENIVWDNSPAASDNSIESHEIAGAD---VESALMRGIE--LDTGQNNFHE--R  441 (1282)
Q Consensus       369 ~~~~~~~~~~~~~~~~~f~pl~q~~we~~i~w~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~--~  441 (1282)
                      |+..+....|+|++++..+|+++++|+..|||..+|....+.   |++.+.-   ....+..|..  -.+++..+.-  .
T Consensus       167 d~~~~~~~~~~sqls~~~~~gdk~~~~~~~i~E~~p~~~~~~---~e~~~~g~~~~~g~l~~g~~~~~vt~~~~~v~~~r  243 (1563)
T KOG0008|consen  167 DLIDENSEIGPSQLSMEVEVGDKMEWNLGIIMEPEPEICLAD---DEIKEMGSVESKGLLPPGEPMKKVTEQKPLVIEWR  243 (1563)
T ss_pred             hhcccccccccccccccccccchhhhccCcccCCChHHhccc---hhhhccccccccccCCCCccccccccccccccccc
Confidence            999889989999999999999999999999999999877665   2222221   0000111200  0111111111  0


Q ss_pred             --cCCCCCcccccccCCCCccccccCCCCCCCCCCCCCcccccccccccccccccccccCccCCCCcchh----------
Q 000792          442 --STSPNEKDCIVNMQNSPVLSETFGSKSSSDNTSHLFTESRYHPQLLRLESQLDLDNHSHANGIKENVS----------  509 (1282)
Q Consensus       442 --~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~hp~~lr~e~~~~~~~~~~~~~~~~~~~----------  509 (1282)
                        ..+..-++  -..+.+...++ ||..+ +-....+++.++.|||++++|++     .+|.+..++...          
T Consensus       244 ~gp~~~~y~~--~~vP~~~~~ln-~gfk~-kqs~~~~~~~s~~~~q~~~~e~d-----~~~~~s~~~~~~l~~kqL~~e~  314 (1563)
T KOG0008|consen  244 YGPAQIWYDM--MKVPESGMPLN-FGFKL-KQSPNESANKSRKTPQALSPESD-----ENESDSLRDAIFLSIKQLEWED  314 (1563)
T ss_pred             cccceeeecc--ccCCCcCCccc-cchhc-ccCccccccccCCCccccccccc-----ccccccchhhhhhhHhhcchhh
Confidence              11111111  22456677788 99876 34456678889999999999952     222222221000          


Q ss_pred             ---------------------------hh-------hc---------ccccccccccCcccCcccCCCCccceeeccCCC
Q 000792          510 ---------------------------IK-------LC---------QSDAVKRFSKHSLQNRDMMEGSWLDNIIWEPVD  546 (1282)
Q Consensus       510 ---------------------------~~-------~~---------~~~~~~r~s~~~~~N~dL~~g~W~d~IiWD~~~  546 (1282)
                                                 ..       .+         +..-..=|++||+.|.+|.+..|+++||||+..
T Consensus       315 ~v~~~g~~~~~k~~~~~~~~~~~gWd~~~i~tr~~~~f~~~d~~m~~~i~d~~~~~~~~~~~~~li~~~we~~~i~Daq~  394 (1563)
T KOG0008|consen  315 DVRKDGEDVKDKVLEDENWLDLDGWDPNKIYTRNALAFNLQDSSMTFNIPDNKGYKIFPLHNDSLIYSRWEDDIIWDAQA  394 (1563)
T ss_pred             hcccchHHHHHhhhhhcccccccccccccccccchhhhcccccccccccCCCccccccccccchhhhchhhhheeechhh
Confidence                                       00       00         011133577999999999999999999999944


Q ss_pred             CCC--C-CceeecCCCCCceeeeccCCCCCcc----------------------------------------cccccccc
Q 000792          547 AVG--K-PKLILDLQDEQMLFEILDNKDDEHP----------------------------------------LLHAGAMI  583 (1282)
Q Consensus       547 ~~~--k-pKLiLDlnD~nmifei~d~kd~~~l----------------------------------------~~~A~a~~  583 (1282)
                      ...  . ..|.|| ||+++||++++.+...+.                                        +++.|..+
T Consensus       395 ~~s~~~~~~l~L~-nD~~Lilg~~~~k~qa~~kk~~~~~~~~~~~lk~K~lls~d~~~~~~~~~~q~k~~k~rltvg~~~  473 (1563)
T KOG0008|consen  395 MPSSLSPWVLNLD-NDENLILGIPDDKRQAKQKKSSKHSKRVFHSLKSKFLLSNDGKYQNLKQDHQSKGGKVRLTVGGLE  473 (1563)
T ss_pred             ccCCCCCceEEec-CChhhhcCCcccchhcccCCCccccccccchhhhhhhhcchHHhhhhhhcccccccceeeeccccc
Confidence            322  2 358889 999999999988874221                                        22234444


Q ss_pred             ccCCCCCCCC-CCcc---ccccccccccccccccccccccCCCccccccccccccCcccccCCCCCCCCCCCCCCCccCC
Q 000792          584 ITRSAKPSDF-KPAE---SVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTKIHLLPRAQKLPGENKSLRPPGAFKKKSD  659 (1282)
Q Consensus       584 i~~~~K~~~~-~P~~---~~klfY~gkel~~~~Sl~~~~VrPnsl~h~~R~k~~~~pka~r~pg~~kslrp~gaFkk~sD  659 (1282)
                      |-|+.++..+ .|++   ..+++|.+.....-++++.++++|+++.|+.++..|.|+++++.++..+++++++.|....|
T Consensus       474 IqHS~pA~~Lr~pFykT~~~k~~lR~fHRp~~k~~~~~~~qp~~~~~vf~~lkh~kr~a~kr~~er~s~~~~~~ftmrdD  553 (1563)
T KOG0008|consen  474 IQHSLPAVNLRLPFYKTHMSKMKLRGFHRPPFKSRISGAVQPNSPHHVFSPLKHRKRKADKREGERESIGGGGEFTMRDD  553 (1563)
T ss_pred             eeecchhhhccCCcccccccHHHHhhccCCchhhccccccCCCCcccccchHHHHHHHHhhCccchhccCCccceEeccc
Confidence            5555554433 2333   34456677666666788999999999999999999999999999999999999999999899


Q ss_pred             cccCCCceEEEEeeccCCccccCCCcccccccccCCCCCCCCccccccCCCCCCCceEEcCCCCC--CCcceecCCCCce
Q 000792          660 LSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDK--SPFLGDIKAGCSQ  737 (1282)
Q Consensus       660 LSlkDG~lVLmEYsEE~PpLLSNvGMgSkIiNYYRKk~~~D~~~~~lr~~k~~lGe~vvL~p~D~--SPFLG~V~PGqtv  737 (1282)
                      ||.+||++||||||||||++|||+||||+|+|||||+++.|+.+|.     .+.|+.++|.++|.  |||||.|+|||.+
T Consensus       554 Lsgkdg~v~L~EYsEE~P~~Lsn~GMaskl~nYYrK~n~~D~~~~~-----~~d~~~~vl~~eh~sp~pflG~vhPG~s~  628 (1563)
T KOG0008|consen  554 LSGKDGHVILMEYSEEHPVLLSNAGMASKLKNYYRKKNEQDEYRPK-----LPDGEYGVLDVEHTSPSPFLGSVHPGQSL  628 (1563)
T ss_pred             ccCCCCCEEEEEecccCchhhccchHHHHHHHHHhccCccccccCC-----CCcccceeEeecCCCCCCcccccCCCcch
Confidence            9999999999999999999999999999999999999999998753     36777777778887  7779999999999


Q ss_pred             eeeecccccCCCCCCCCCCceEEEEEcCCCc--EEEEecCceeeccccccccccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 000792          738 SSLETNMYRAPVFTHKVATTDFLLVRSAKGK--ISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSA  815 (1282)
Q Consensus       738 ~tLeNNMfRAPIFkHk~~~TDFLLIRS~~Gk--~yIReId~LfvVGQqeP~vEVP~PhSKkvt~f~KNRLkv~iyRlf~k  815 (1282)
                      |||||||||||||+|++++||||||||++|+  ||||+|++|||||||||++|||+||||++|+|++|||+|||||+||+
T Consensus       629 qaleNNMyRAPIF~Hk~~~TDfLLiRS~~g~~r~ylR~In~IfvVGQq~Pl~EVpgPnSKk~tt~~~nrLkv~IYRlF~~  708 (1563)
T KOG0008|consen  629 QALENNMYRAPIFKHKMQSTDFLLIRSSSGKMRYYLRNINHIFVVGQQFPLEEVPGPNSKKLTTFLRNRLKVFIYRLFWK  708 (1563)
T ss_pred             HHHhhcchhcccccccCCCCcEEEEecCCCCceEEEeccCcEEEecccccccccCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999886  99999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCcccHhHHhhhCCCCcHHHHHHHHHHhhcccccCCCceeEEecCCCCCCChHHhhhhCChhhhHHHHHHHHHH
Q 000792          816 AAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGL  895 (1282)
Q Consensus       816 ~~~~~~~~rIrv~DI~k~FP~~sE~qIRKRLKEcAd~qR~g~g~g~W~lKp~~rLPsEEELR~mITPEdVCayESMqAG~  895 (1282)
                      +..  .++||+|++|++|||+++|++||||||+||+|+|+|++.+||+||++|++|+|++||+|||||+||+||||+||+
T Consensus       709 s~~--g~r~I~id~lsk~Fp~~se~siRKrLKecad~kR~G~~~~~W~LK~df~lp~eeelrslVtPE~vCayeSMlAge  786 (1563)
T KOG0008|consen  709 SDS--GPRRIRIDDLSKAFPDQSESSIRKRLKECADFKRDGMGKNYWVLKPDFRLPDEEELRSLVTPEQVCAYESMLAGE  786 (1563)
T ss_pred             cCC--CCcceehhHHHhhCcccchHHHHHHHHHHHHHhhcCCCCCeeEecccccCCCHHHHhhhcCHHHHHHHHHHHHHH
Confidence            854  568999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCccccCccchhhhhccCchHHHHHHHhhhHHHHHhcCcchhhHHHHH-HhhcCcccceeeeeeccCCCCCCCc
Q 000792          896 YRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVA-CTNQDRENIERLEITGVGDPSGRGL  974 (1282)
Q Consensus       896 qRLkDaGy~~lt~~~~is~am~ql~DE~~~~~~a~~IE~ELqLAPWNlTrNFv~-At~QgKa~i~mLqL~G~GDPTGrGE  974 (1282)
                      |||+|+||+....     .+..++++|    +++.+|++|+++||||||||||+ |+ |||   |||+|||+||||||||
T Consensus       787 qrLkDaGyg~~~~-----~a~e~ddeE----~~~~~ie~E~~~aPWNtTrnFInqa~-~gk---~lLeltGvgDPTGcGe  853 (1563)
T KOG0008|consen  787 QRLKDAGYGEKYF-----FAPESDDEE----AAQSKIEDEVQLAPWNTTRNFINQAT-QGK---CLLELTGVGDPTGCGE  853 (1563)
T ss_pred             HHHHhcCcchhhc-----ccccccchh----hhhhcchhhhccCcchhhHHHHHHHh-ccc---eeEEeecCCCCCcccC
Confidence            9999999986432     234445555    57899999999999999999995 76 677   6999999999999999


Q ss_pred             eeEEEEcCCCccchhHHHHhHHhhcCCCCccccCchhhhccCHHHHHHHHHhCCCCHHHhhccCchhhhHHHHHhhHHHH
Q 000792          975 GFSYVRAAPKASVSSAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQA 1054 (1282)
Q Consensus       975 GFSfIR~s~K~~~~~~~~kkKa~~~rg~~~VTGTDADLRKLSM~EAR~iLrkfGVpEEeIkkLtRWdrIaLVRkLSsEqA 1054 (1282)
                      ||||||++.|+.....  .+++++.  .++|||||||||||+|..|+++|++|||+||+|++++||+||+|||++|+|+|
T Consensus       854 GFSyvRip~kpt~~k~--~~k~a~~--~~tvTgtdaDlrrl~~~~A~~vl~qf~v~EEeIak~trwe~i~~ir~~stE~A  929 (1563)
T KOG0008|consen  854 GFSYVRIPNKPTSMKE--GKKPAPA--KKTVTGTDADLRRLSLKAAKEVLRQFGVPEEEIAKLTRWERIDVIRTLSTEQA  929 (1563)
T ss_pred             cceeEeccCCcccccc--ccccCCc--cCcccCCCcccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhchHHHH
Confidence            9999999999876643  2233332  37999999999999999999999999999999999999999999999999999


Q ss_pred             hhhh-----------------HHHHHHHHHHHHHHHHHHHhhcc---CCCCCCCCCCC-CCchhhHHHhHHHhhhhhhhh
Q 000792         1055 ASGV-----------------QLQQQTRGKCQEIWDRQVQSLSA---ADDDEIGSDSE-HSDLDSFAGDLENLLDAEEFE 1113 (1282)
Q Consensus      1055 asGv-----------------e~QqqYkEecq~IfdrQ~~sLSs---~d~De~eS~~e-~sD~d~~~~dlE~~L~a~e~~ 1113 (1282)
                      ++|.                 ++|++||++||+||++|++.|++   .++|+++|+.+ ++|+|++++|||+||++++++
T Consensus       930 ks~~~~t~~~~f~rgnr~s~~e~qe~~re~cqri~d~qN~il~s~~~~~tD~~~s~a~~~sd~E~~~~~le~lL~~~kg~ 1009 (1563)
T KOG0008|consen  930 KSGGHETIMDKFARGNRFSFAERQEDYREKCQRIFDRQNGILESTEVFSTDPNESQAEEDSDLEEDGKDLENLLEAKKGK 1009 (1563)
T ss_pred             hcCCCCchhhhhhccccchhhhhhhHHHHHHHHHHHHhhcchhcccccccCCccchhhhhhhHHHhHHHHHHHhhccccc
Confidence            9982                 78999999999999999888876   45999999875 999999999999999999998


Q ss_pred             hccccccccccccccccccc-cccchhhhHhhHHHhHHHHHHHHHHHHhcchhH------HHHHHhhhccccccccCccc
Q 000792         1114 EEESNYDTKHDKVEGVKGLK-MRRRPIQVQAEEEIEDEAAEAAELCRLLMDDDE------AELKKKKKKTKAQVEGGLSL 1186 (1282)
Q Consensus      1114 ~~e~~~~~k~~~~~g~~gl~-~rr~~~~~q~~e~ie~E~~E~~eL~rll~~d~~------~~~~~k~~~~~~~~~~~~~~ 1186 (1282)
                      +.++....+..+.+++++|+ ++|++.++...+++++++.+++++++.+++...      ..++.|...+|--.++.-+.
T Consensus      1010 e~~~re~e~~eke~~~~~l~~~~~~~~~~ak~~~~~d~a~~~~~~~~~~~~~~~i~~~d~~~K~~k~~e~v~r~~~i~ay 1089 (1563)
T KOG0008|consen 1010 EAESREREEQEKEDLKRLLNQERRQPRSVAKDEEIKDNASEYALNSSNLSQLLKIYRKDEHGKENKRCETVRRPELIGAY 1089 (1563)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhhhchhhhcccccccccccccccccccccccccccc
Confidence            87777888899999999999 999999988889999999999999998876543      33344444444222223332


Q ss_pred             ccCCcchhhHHHHhhcCCccccceeeecCCCcccccc-cccCchHHHHHHHhccccccccccc
Q 000792         1187 AKSISGLEIVERLKKANKPAKHIAITVQPNGSHTANE-QIKDPKEEESLIAKRNLSGKVQAMK 1248 (1282)
Q Consensus      1187 ~~p~~~~~~~~~~~~~~~~~k~~~~~~~p~g~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~ 1248 (1282)
                      .++.-.++-+    +++.+.++ .+..+++-+.-..| +++.-+++++-..|-+..+|--++|
T Consensus      1090 ~~iR~~kd~~----~~a~~D~~-~~~~~~~~~~ri~Eq~~r~~rn~ek~~~k~~~~~~p~k~k 1147 (1563)
T KOG0008|consen 1090 PRIRTNKDEQ----KYAIMDEQ-YIAEMRKESRRIQEQIRRAKRNQEKSFLKGPPEEKPKKMK 1147 (1563)
T ss_pred             cCCcCCcchH----hHhhhccc-ccccchhHHHHHHHHHHHHHhhhhcccccCCcccCccccC
Confidence            2332223332    33344444 33366676766677 8899999987554544444443333

>PF12157 DUF3591: Protein of unknown function (DUF3591); InterPro: IPR022591 This functionally uncharacterised domain is found centrally in the eukaryotic transcription initiation factor TFIID subunit 1	Back alignment and domain information

>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]	Back alignment and domain information

>PF09247 TBP-binding: TATA box-binding protein binding; InterPro: IPR009067 In eukaryotes, the general transcription factor TFIID helps to regulate transcription by RNA polymerase II from class II promoters	Back alignment and domain information

>PF02270 TFIIF_beta: Transcription initiation factor IIF, beta subunit; InterPro: IPR003196 Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1282
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2bwf_A		77	Ubiquitin-like protein DSK2; signaling protein, UB	4e-05
1we6_A		111	Splicing factor, putative; structural genomics, ub	5e-05
1uel_A		95	HHR23B, UV excision repair protein RAD23 homolog B	7e-05
2kd0_A		85	LRR repeats and ubiquitin-like domain-containing p	8e-05
1we7_A		115	SF3A1 protein; structural genomics, ubiquitin-like	9e-05
2wyq_A		85	HHR23A, UV excision repair protein RAD23 homolog A	1e-04
3m63_B		101	Ubiquitin domain-containing protein DSK2; armadill	1e-04
1ndd_A		76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	2e-04
2faz_A		78	Ubiquitin-like containing PHD and ring finger DOM	2e-04
1ttn_A		106	DC-UBP, dendritic cell-derived ubiquitin-like prot	2e-04
3b1l_X		76	E3 ubiquitin-protein ligase parkin; proteasome, AL	3e-04
2dzi_A		81	Ubiquitin-like protein 4A; GDX, structural genomic	4e-04
4fbj_B		88	NEDD8; effector-HOST target complex, glutamine dea	4e-04
1wx8_A		96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	5e-04
3m62_B		106	UV excision repair protein RAD23; armadillo-like r	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 78.4 bits (192), Expect = 1e-14
 Identities = 108/650 (16%), Positives = 190/650 (29%), Gaps = 190/650 (29%)

Query: 392 HDWEENIVWD-------NSPAASDNSIESHEIAGA-DVESALMR--GIELDTGQN---NF 438
             +E+  V +       + P +  +  E   I  + D  S  +R     L   +     F
Sbjct: 23  SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 439 HERSTSPNEK---DCIVNMQNSPVL-SETFGS-KSSSDNTSHLFTESRYHPQLLRLESQL 493
            E     N K     I   Q  P + +  +   +    N + +F  ++Y+  + RL+  L
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF--AKYN--VSRLQPYL 138

Query: 494 DLDNH----SHANGI---------KENVSIKLCQSDAVKRFSKHSLQNRDMMEGSWLDNI 540
            L         A  +         K  V++ +C S  V+            M+      I
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC----------KMDF----KI 184

Query: 541 IWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGAMIITRSAKPS--------- 591
            W  +     P+ +L++   Q L   +D          +   +   S +           
Sbjct: 185 FWLNLKNCNSPETVLEML--QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 592 ---------DFKPAESVKLFYLG-KEL---EDHKSLADQNVRPNSLIHLIRTKIHLLPRA 638
                    + + A++   F L  K L      K + D       L     T I L   +
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRF-KQVTD------FLSAATTTHISLDHHS 295

Query: 639 QKL-PGENKSLRPPGAFKKKSDLSVKDGHVFL-MEYCEERPLLLSNAGMGANL----CT- 691
             L P E KSL       K  D   +D    L  E     P  LS   +  ++     T 
Sbjct: 296 MTLTPDEVKSL-----LLKYLDCRPQD----LPREVLTTNPRRLS--IIAESIRDGLATW 344

Query: 692 -YYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSP-------FLGDIKAGCSQSSLE-- 741
             ++  +  D+   ++    + L     LEP +          F            L   
Sbjct: 345 DNWKHVN-CDKLTTII---ESSLNV---LEPAEYRKMFDRLSVFPPSAHI--PTILLSLI 395

Query: 742 -TNM--YRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQ 798
             ++      V  +K+     +  +  +  ISI  I         E  +       K   
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-------YLELKV-------KLEN 441

Query: 799 TYSINRMLVNVYREFSAAAKRGLLP----------------CIGVDELSVQFPN--LSEA 840
            Y+++R +V+ Y          L+P                 I   E    F    L   
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501

Query: 841 IIRKKLKECAFLRRDG-NGKQVWSMKRTFHIPSEGDLRKLAYPEHVC----SYESM---- 891
            + +K      +R D        S+  T        L+   Y  ++C     YE +    
Sbjct: 502 FLEQK------IRHDSTAWNASGSILNTLQ-----QLKF--YKPYICDNDPKYERLVNAI 548

Query: 892 -------QAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIER 934
                  +  L   K+  + ++ L            DEAI   A   ++R
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIAL---------MAEDEAIFEEAHKQVQR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77	Back alignment and structure

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111	Back alignment and structure

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95	Back alignment and structure

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85	Back alignment and structure

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115	Back alignment and structure

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85	Back alignment and structure

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101	Back alignment and structure

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76	Back alignment and structure

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78	Back alignment and structure

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106	Back alignment and structure

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76	Back alignment and structure

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81	Back alignment and structure

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88	Back alignment and structure

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96	Back alignment and structure

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1282
d2bwfa1		73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	8e-06
d1uela_		95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	1e-05
d1oqya4		77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	6e-05
d1bt0a_		73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	1e-04
d1x1ma1		94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	2e-04
d1z2ma2		76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	3e-04
d2zeqa1		78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	5e-04
d1wh3a_		87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	5e-04
d1zkha1		86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	6e-04
d1wgha_		116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	0.001
d1tbaa_		67	a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fru	0.001
d1ogwa_		76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	0.002
d1wgda_		93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	0.004

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (101), Expect = 8e-06
 Identities = 9/37 (24%), Positives = 23/37 (62%)

Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTK 631
           P  + +L Y GK L+D +++   +++    +HL++++
Sbjct: 37  PVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 73

PyMOL of d2bwfa1

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95	Back information, alignment and structure

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77	Back information, alignment and structure

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73	Back information, alignment and structure

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94	Back information, alignment and structure

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76	Back information, alignment and structure

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78	Back information, alignment and structure

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87	Back information, alignment and structure

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86	Back information, alignment and structure

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116	Back information, alignment and structure

>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 67	Back information, alignment and structure

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76	Back information, alignment and structure

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1282
d1tbaa_		67	TAF(II)230 TBP-binding fragment {Fruit fly (Drosop	98.3
d2bbya_		69	DNA-binding domain from rap30 {Human (Homo sapiens	94.55

>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

class: All alpha proteins
fold: TAF(II)230 TBP-binding fragment
superfamily: TAF(II)230 TBP-binding fragment
family: TAF(II)230 TBP-binding fragment
domain: TAF(II)230 TBP-binding fragment
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.30  E-value=6.8e-09  Score=75.37  Aligned_cols=49  Identities=29%  Similarity=0.500  Sum_probs=45.0

Q ss_pred             CCCCCEEEEEECCCCCCCCCCCC---------CCCHHHHHHHHHHHH-HHCCCCCCCCC
Q ss_conf             89732024662035898998631---------011889999999996-42697201223
Q 000792           26 SGGNRLLGFMFGNVDYAGDLDVD---------YLDEDAKEHLAAVAD-KLGPSLTDIDV   74 (1282)
Q Consensus        26 ~~~~~~~gf~fgnv~~~g~l~~~---------~ld~~~k~hl~~~~~-~lg~~~~~i~~   74 (1282)
                      ++|..|+||||||||..|+|+.|         +||+++|+||+.|+. +|++.|++|..
T Consensus         5 g~~~~LtGfLFGNId~~G~Le~Dd~~~g~~~s~lD~E~k~~L~~Ls~lGL~sll~Ev~~   63 (67)
T d1tbaa_           5 GNGLDLTGILFGNIDSEGRLLQDDDGEGRGGTGFDAELRENIGSLSKLGLDSMLLEVID   63 (67)
T ss_dssp             SCSCCCTTHHHHCEETTTEECCSSCCCSSSCSSCCTTTHHHHTTCTTTTHHHHHHTSCC
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77711012244142777755356333444331028999998988865118889999873

PyMOL of d1tbaa_

>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure