Citrus Sinensis ID: 000815

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------127

MVDPATTPLGKMLLDEITPVVMVLRTPLVEESCGKNGISLLQMLSPFCNFSNIDVPVRTASDQPYRLHKFKLRLVYESDIRHPNLEVAKEQLKQVITRTGEKELSELGSDPTEISDVVGRSESEILPSWFQLFNKELMHTVSFSEHEAFDHPVACLLVVSSEDEQPINRFIDLFNTNKLPSLLNDGAMDPKILKHYLLVHDNQDGPSEKASKILTEMRSTFGPNDCQLLCINSSEDGRIERQDNPWASHKSDASPSKHLGSFLNNDDFSEIKDVMQELASKHIIPYMEQKIRVLNQQVSATRKGFRNQLKNLWWRKGKEETSDSPNGPMYTFSSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGETRQSSGSCPGYPYFLTVLQAS

cccccccHHHHHHHcccccEEEEEEcHHHHHHHHHccccHHHHHHccccccccccEEEccccccEEEEccEEEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccEEEEEEEEcccccHHHHHHHHHHccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccEEEEcccccccHHHHcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccEEEcccEEEEEEEEccccccEEEEEEEEEEEEEcccccccccccccccccccHHHHcccccccccccccccEEEEEEEEEEccccEEEEEEEEEEcEEEEEEEEEEEEEEccccEEEEEEEccccHHHccccccccccccccccEEEEEcccccEEEEEEccccccccccEEEEEEEEEEccccccccEEEEEccccEEEEcccccccccccHHHccccccccccccccccccccEEEcccccccccccccEEEEEEEEcccccEEEEEEEEEEEEccccccccEEEEEEEEEEEEEEcEEEEEEEEEccccccEEEEEEEEEEccccccEEEEEEEEEEccEEEEEcccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccEEEEEccccccccccccccccEEEEEccccccccccccccccccccEEccccccccccccccccccccccccEEEEEccccccccccccccccccEEcccccccccccccccEEccccccccccccccccccccccccEEEEEccccEEEEccccEEEEEEEEEEEEccEEEccccEEEEEEEccccccccccccccccccccccEEEEEEEcc

ccccccHHHHHHHHHHcccEEEEEEcHHHHHHHHHccccHHHHHccHccccccEEEEEcccccEEEEccEEEEEEEccccccccHHHHHHHHHHHHHHHcHHHHHHcccccccHHHHccccccccccHHHHHHHHHHHHcccccccccccccEEEEEEEEcccccHHHHHHHHHHcccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHccccccEEEEEccccccccccccccccccHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccEEcccccccEccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEccEEEEEEEEEcccccEEEEccEEEEEEEcccccccccccccccccccccHHHccccccccccccccEEEEEEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEEEEccccccEEEccccccccccccccccEEcccccEEEEEcccccEEEEEEEcccHHHccccEEEEEEEEEEcccccccEEEEEEccccEEEEcccccccccccHcHcccccccccccccccccccEEEEEcccccccccccEEEEEEEEEccccccEEEEEEEEEEccccccccEEEEEEEEEEEEEEccEEEEEEEEEcccccccEEEEEEEEEcccccEEEEEEEEEEcccEEEEcccccccccccHcccccHHEEEEEEccccccccccHcccccccccccccccccccHHHHHHccccccHcHHHHHHHHHcccccccccEEEEEEEEEEcccccccccccccHHHHHHHHHHccccccccccccccccHcccHHccccccccEEEEccccHHHHEEEEEcccccccccccccEEEEEEEEEEccccccEcEEEEEEcEcccccccccccccccccccccEEEEEcEEEEEEEccccEEEEEEEEEEEcccEEEcccEEEEEEEcccccccccccccccccccccccEEEEEEEcc

mvdpattplgkmlldeitPVVMVLRtplveescgkngISLLQMLspfcnfsnidvpvrtasdqpyrlHKFKLRLVYesdirhpnlEVAKEQLKQVITRTGEKelselgsdpteisdvvgrseseilpSWFQLFNKELMHtvsfseheafdhpVACLLVvssedeqpiNRFIDLfntnklpsllndgamdpKILKHYLLVhdnqdgpseKASKILTEMrstfgpndcqllcinssedgrierqdnpwashksdaspskhlgsflnnddfSEIKDVMQELASKHIIPYMEQKIRVLNQQVSATRKGFRNQLKNLWWrkgkeetsdspngpmytfssIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIgssgqqnatrCGLWWVEMLKARHQYKDAATVYFRIcgeeplhsAVMLEQASYcyllskppmlhkygfhlvlsgdrykkcdQINHAIRTYRSAVSVykgstwshikdHVHFHIGQWYAVLGMHDIAVAHMLEKTgktfevvkprlpiinisslKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEesnicvagepvkvdiefknplqipisisnISLICElstrsdemesdsnssttelqndEESKLLTttgemnsdtssfTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAkgrrkvksspsndlKFIVIKSlpkleglihplperayaGDLRHLVLELKnqsdfsvknlkmkvshprflsignrddmtkEFPACLQKMTNaeqsvaggnfnkmpqavfsfpegisiqgetpllwplwyraavpgkisLSITIYYEMGDVSSVIKYRLLRMHYnlevlpslnvsfqispwsSRLQQYLVRMDVVnqtssenfqihqlssvghqweisllqpfdsifpseslfagqALSCFFMLknrgesstssddtsspsrllgsdvslqgtadtlfdisgspladfhAHERLLQRvsqddtntvdfifisqpsksdsdsgisdpqhlfshhachcsilgktpitwlvdgprtlhhnfnasfceVNLKMTIYNSSDAAMFVRVntfdspsssgqtseatsprsavpsgnqagwhdvpvltdikvtsqlplnqvkrssllesvspfiwsgssassvrlqpmsttdiamkvclfspgtydlsnyALNWKLLTisgqgnegetrqssgscpgypyFLTVLQAS

mvdpattplgkmlldeiTPVVMVLRTPLVEESCGKNGISLLQMLSPFCNFSNIDVPVRTASDQPYRLHKFKLRLVYESDIRHPNLEVAKEQLKQVITRTgekelselgsdpteiSDVVGRSESEILPSWFQLFNKELMHTVSFSEHEAFDHPVACLLVVSSEDEQPINRFIDLFNTNKLPSLLNDGAMDPKILKHYLLVHDNQDGPSEKASKILTEMRSTFGPNDCQLLCINSSEDGRIERQDNPwashksdaspskhlGSFLNNDDFSEIKDVMQELASKHIIPYMEQKIRVLNQQVSATRKGFRNQLknlwwrkgkeetsdspngpmyTFSSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKtfevvkprlpiinisslkVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNplqipisisnISLICELSTRSdemesdsnssttelqndeESKLLTTtgemnsdtsSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGvynfesnlvkkkiakgrrkvksspsndlkfiVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQsdfsvknlkmkvshprflsignrdDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESstssddtsspsrlLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLEsvspfiwsgssassVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGetrqssgscpgypYFLTVLQAS

MVDPATTPLGKMLLDEITPVVMVLRTPLVEESCGKNGISLLQMLSPFCNFSNIDVPVRTASDQPYRLHKFKLRLVYESDIRHPNLEVAKEQLKQVITRTGEKELSELGSDPTEISDVVGRSESEILPSWFQLFNKELMHTVSFSEHEAFDHPVACLLVVSSEDEQPINRFIDLFNTNKLPSLLNDGAMDPKILKHYLLVHDNQDGPSEKASKILTEMRSTFGPNDCQLLCINSSEDGRIERQDNPWASHKSDASPSKHLGSFLNNDDFSEIKDVMQELASKHIIPYMEQKIRVLNQQVSATRKGFRNQLKNLWWRKGKEETSDSPNGPMYTFSSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLvkkkiakgrrkvkSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGEsstssddtsspsRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGETRQSSGSCPGYPYFLTVLQAS

*********GKMLLDEITPVVMVLRTPLVEESCGKNGISLLQMLSPFCNFSNIDVPVRTASDQPYRLHKFKLRLVYESDIRHPNLEVA***********************************EILPSWFQLFNKELMHTVSFSEHEAFDHPVACLLVVSSEDEQPINRFIDLFNT******************HYLLV**********************GPNDCQLLCI**************************************EIKDVMQELASKHIIPYMEQKIRVLNQQVSATRKGFRNQLKNLWWR**************YTFSSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICEL****************************************TLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIA************DLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGN*******FPACLQ**********GGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFML******************************DTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFI****************HLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNT**************************GWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSG**********MSTTDIAMKVCLFSPGTYDLSNYALNWKLLTIS***************PGYPYFLTVL***

**********KMLLDEITPVVMVLRTPLVEESCGKNGISLLQMLSPFCNFSNIDVPVRTASDQPYRLHKFKLRLVYES*********************************************EILPSWFQLFNKELMHTVSFSEHEAFDHPVACLLVVSSEDEQPINRFIDLFNT*KL*SLLNDGAMDPKILKHYLLVHDNQDG***************FGPNDCQLL*******************HKSDASPSKHLGSFLNNDDFSEIKDVMQELASKHIIPYMEQKIRVLNQQVS***********************************IESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGK********LPIINISSLKVIFE****************LWRSLEEDM***********L*****************VAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDE**************************MNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNF**********************DLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMT*****************************F************PLLWPLWYRAAVPGKISLSITIYYEMGD***VIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEI*LL************FAGQALSCFFMLKN***************RLLGSDVSLQG*********************************VDFIFISQP*************HLFSHHACHCSILGKTPITWLVDG********************IYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTD**********************PFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWK**********************YPYFLTVLQA*

MVDPATTPLGKMLLDEITPVVMVLRTPLVEESCGKNGISLLQMLSPFCNFSNIDVPVRTASDQPYRLHKFKLRLVYESDIRHPNLEVAKEQLKQVITRTGEKELSELGSDPTEISDVVGRSESEILPSWFQLFNKELMHTVSFSEHEAFDHPVACLLVVSSEDEQPINRFIDLFNTNKLPSLLNDGAMDPKILKHYLLVHDNQDGPSEKASKILTEMRSTFGPNDCQLLCINSSEDGRIER**************SKHLGSFLNNDDFSEIKDVMQELASKHIIPYMEQKIRVLNQQVSATRKGFRNQLKNLWWRK********PNGPMYTFSSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELS**********************SKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKI************NDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNR***************LLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQ***********DPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTF**********************NQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQ***********SCPGYPYFLTVLQAS

****ATTPLGKMLLDEITPVVMVLRTPLVEESCGKNGISLLQMLSPFCNFSNIDVPVRTASDQPYRLHKFKLRLVYESDIRHPNLEVAKEQLKQVITRTGEKELSELGSDPTEISDVVGRSESEILPSWFQLFNKELMHTVSFSEHEAFDHPVACLLVVSSEDEQPINRFIDLFNTNKLPSLLNDGAMDPKILKHYLLVHDNQDGPSEKASKILTEMRSTFGPNDCQLLCINSSEDGRIERQDNPWASHKSDASPSKHLGSFLNNDDFSEIKDVMQELASKHIIPYMEQKIRVLNQQVSATRKGFRNQLKNLWWRKGKEETS****GPMYTFSSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKTFEVVKPRLPIINISSLKVIFEDHRT*****AANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRS*****************************NSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVK*******RKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQ****AEQSVA****NKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNR********DTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTS**********SLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTI***************CPGYPYFLTVLQA*

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1269	2.2.26 [Sep-21-2011]
Q9Y2L5		1435	Trafficking protein parti	yes	no	0.606	0.536	0.264	4e-53
O74748		618	Transport protein particl	yes	no	0.299	0.614	0.240	6e-15
O94731		658	Transport protein particl	no	no	0.192	0.370	0.228	1e-13
P46944		698	Trafficking protein parti	yes	no	0.266	0.484	0.213	0.0009

>sp\|Q9Y2L5\|TPPC8_HUMAN Trafficking protein particle complex subunit 8 OS=Homo sapiens GN=TRAPPC8 PE=1 SV=2	Back alignment and function desciption

 Score =  211 bits (537), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 246/930 (26%), Positives = 401/930 (43%), Gaps = 160/930 (17%)

Query: 260  GSFLNNDDFSEIKDVMQELASKHIIPYMEQKIRVLNQQVSATRKGFRNQL--KNLWWRKG 317
            G+ L   D   I+  +QE   + ++P++E+ IR LN Q+  +RKG    L      W  G
Sbjct: 337  GACLTLTDHDRIRQFIQEFTFRGLLPHIEKTIRQLNDQL-ISRKGLSRSLFSATKKWFSG 395

Query: 318  KEETSDSPN------GPMYTFSSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKA 371
             +    S N      G +Y   + E QIR + D  F+++ Y+LA S Y     D+  D+A
Sbjct: 396  SKVPEKSINDLKNTSGLLYPPEAPELQIRKMADLCFLVQHYDLAYSCYHTAKKDFLNDQA 455

Query: 372  WKRYAGVQEMMGLTYFMLDQS-RKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLK 430
                AG  EM  ++ F+   + R    + M+ A  TY  I       A RC L   E+LK
Sbjct: 456  MLYAAGALEMAAVSAFLQPGAPRPYPAHYMDTAIQTYRDI-CKNMVLAERCVLLSAELLK 514

Query: 431  ARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKC 489
            ++ +Y +AA +  R+  E+  L SA++LEQA++C++  K PM+ KY FH++L+G R+ K 
Sbjct: 515  SQSKYSEAAALLIRLTSEDSDLRSALLLEQAAHCFINMKSPMVRKYAFHMILAGHRFSKA 574

Query: 490  DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVA---HMLEKTGKT 546
             Q  HA+R Y  A+ VYKG  WS  +DH++F IG+    L   D AV+   H+L    K 
Sbjct: 575  GQKKHALRCYCQAMQVYKGKGWSLAEDHINFTIGRQSYTLRQLDNAVSAFRHILINESKQ 634

Query: 547  ------------FEVVK-----------PRLPI--INISSLKVIFEDHRTYASAEA-ANV 580
                          V K           P+LP+  IN S+ +V F   R  A  E  A  
Sbjct: 635  SAAQQGAFLREYLYVYKNVSQLSPDGPLPQLPLPYINSSATRVFFGHDRRPADGEKQAAT 694

Query: 581  RESL-----------WRSLEEDMIPSLSTA--RSNWLELQSKLIMKKFEESN---ICVAG 624
              SL           WR LEE ++  ++     SN+   Q    +  + +++   + V  
Sbjct: 695  HVSLDQEYDSESSQQWRELEEQVVSVVNKGVIPSNFHPTQ--YCLNSYSDNSRFPLAVVE 752

Query: 625  EPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGE 684
            EP+ V++ F+NPL++ + ++++SL+ +   + D    D         N+E  +L+T+  E
Sbjct: 753  EPITVEVAFRNPLKVLLLLTDLSLLWKFHPK-DFSGKD---------NEEVKQLVTSEPE 802

Query: 685  MNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLS-----------GS 733
            M     +  +SE  I+  G E+ + +L + P   G L I+GV + L            G+
Sbjct: 803  M---IGAEVISEFLIN--GEESKVARLKLFPHHIGELHILGVVYNLGTIQGSMTVDGIGA 857

Query: 734  LVGVYNFESNL---VKKK------------IAKGRRKVKSSPSNDLKFIVIKSLPKLEGL 778
            L G +  + +L   V+ K              + +  VK  P   L  I+ + +P LE  
Sbjct: 858  LPGCHTGKYSLSMSVRGKQDLEIQGPRLNNTKEEKTSVKYGPDRRLDPIITEEMPLLEVF 917

Query: 779  IHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGN--------------- 823
                P     G++R   +E  N S   +  LK+    P F + G                
Sbjct: 918  FIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTFGGNTAVLTPLSPSASEN 977

Query: 824  ----RDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAV-FSFPEGISIQGETPLLWPLWY 878
                +  +T     C   +++A     G      P+ +    P+ + + G +  L P+W 
Sbjct: 978  CSAYKTVVTDATSVCTALISSASSVDFGIGTGSQPEVIPVPLPDTVLLPGASVQL-PMWL 1036

Query: 879  RAA-VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSS------ 931
            R     G   ++   YYE       I++R+LR    +    SLNV   +   +S      
Sbjct: 1037 RGPDEEGVHEINFLFYYESVKKQPKIRHRILRHTAIICTSRSLNVRATVCRSNSLENEEG 1096

Query: 932  RLQQYLVRMDVVNQTSSE----NFQIHQLSSVGHQWE----ISLLQPFDSIFPS--ESLF 981
            R    LV +DV N  +SE     F I Q+SS    W+    ++L +  D+   S  +  F
Sbjct: 1097 RGGNMLVFVDVENTNTSEAGVKEFHIVQVSSSSKHWKLQKSVNLSENKDTKLASREKGKF 1156

Query: 982  AGQALSCFFMLKNRGESST-SSDDTSSPSRLLGSD---VSLQGTADTLFDISGSPLADFH 1037
              +A+ C      + E++T SS+  +    + G++    S    AD  +    S L    
Sbjct: 1157 CFKAIRC-----EKEEAATQSSEKYTFADIIFGNEQIISSASPCADFFYRSLSSELKKPQ 1211

Query: 1038 AH-------------ERLLQRVSQDDTNTV 1054
            AH              RL+Q+ S+ D N V
Sbjct: 1212 AHLPVHTEKQSTEDAVRLIQKCSEVDLNIV 1241

May be involved in endoplasmic reticulum to Golgi apparatus trafficking at a very early stage.
Homo sapiens (taxid: 9606)

>sp\|O74748\|TR852_SCHPO Transport protein particle subunit trs85-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs85-2 PE=3 SV=1	Back alignment and function description

>sp\|O94731\|TR851_SCHPO Transport protein particle subunit trs85-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs85-1 PE=3 SV=1	Back alignment and function description

>sp\|P46944\|TRS85_YEAST Trafficking protein particle complex III-specific subunit 85 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRS85 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1269
255566159		1284	conserved hypothetical protein [Ricinus	0.973	0.962	0.701	0.0
359481103		1289	PREDICTED: trafficking protein particle	0.985	0.970	0.687	0.0
296089365		1262	unnamed protein product [Vitis vinifera]	0.970	0.976	0.685	0.0
449437874		1288	PREDICTED: trafficking protein particle	0.993	0.979	0.657	0.0
356503854		1289	PREDICTED: trafficking protein particle	0.991	0.975	0.652	0.0
356572629		1283	PREDICTED: trafficking protein particle	0.988	0.977	0.649	0.0
356572633		1257	PREDICTED: trafficking protein particle	0.966	0.976	0.631	0.0
356572631		1254	PREDICTED: trafficking protein particle	0.965	0.976	0.628	0.0
334187710		1272	uncharacterized protein [Arabidopsis tha	0.973	0.970	0.595	0.0
334187712		1244	uncharacterized protein [Arabidopsis tha	0.951	0.970	0.582	0.0

>gi\|255566159\|ref\|XP_002524067.1\| conserved hypothetical protein [Ricinus communis] gi\|223536635\|gb\|EEF38277.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 1857 bits (4810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 892/1271 (70%), Positives = 1047/1271 (82%), Gaps = 35/1271 (2%)

Query: 2    VDPATTPLGKMLLDEITPVVMVLRTPLVEESCGKNGISLLQMLSPFCNFSNIDVPVRTAS 61
            +DPA+TPLGKML++EITPVVMVLRTPLVEE+C KNG+S ++MLSPFCNFSNIDVPVRT+S
Sbjct: 1    MDPASTPLGKMLMEEITPVVMVLRTPLVEEACIKNGLSFVEMLSPFCNFSNIDVPVRTSS 60

Query: 62   DQPYRLHKFKLRLVYESDIRHPNLEVAKEQLKQVITRTGEKELSELGSDPTEISDVVGRS 121
            DQPYRLH FKLRL YESDIR PNLEVAKE+LK VIT+ GEK+ ++L SD   I+D +  S
Sbjct: 61   DQPYRLHNFKLRLFYESDIRQPNLEVAKERLKHVITQAGEKDHTDLSSDSPPIADALASS 120

Query: 122  ESEILPSWFQLFNKELMHTVSFSEHEAFDHPVACLLVVSSEDEQPINRFIDLFNTNKLPS 181
            ESE LPSWFQ  N+EL+ TVSFS+HEAFDHPVACLLVVSS+DEQPINRF+DLFNTNKLPS
Sbjct: 121  ESESLPSWFQFVNEELVRTVSFSDHEAFDHPVACLLVVSSKDEQPINRFVDLFNTNKLPS 180

Query: 182  LLNDGAMDPKILKHYLLVHDNQDGPSEKASKILTEMRSTFGPNDCQLLCINSSEDGRIER 241
            LLNDGAMDPKILKHYLLVHDNQDG SEKA+K+LTEM++TFG NDC +LCINSS+D +I+ 
Sbjct: 181  LLNDGAMDPKILKHYLLVHDNQDGSSEKATKLLTEMKNTFGSNDCHVLCINSSQDEQIKH 240

Query: 242  QDNPWASHKSDASPSKHLGSFLNNDDFSEIKDVMQELASKHIIPYMEQKIRVLNQQVSAT 301
             +N WAS K+  SP++HLG FLN DD  EIKD+MQEL+SK+IIPYMEQK+RVLNQQVSAT
Sbjct: 241  DENLWASCKAAISPNQHLGCFLNIDDLKEIKDLMQELSSKYIIPYMEQKVRVLNQQVSAT 300

Query: 302  RKGFRNQLKNLWWRKGKEETSDSPNGPMYTFSSIESQIRILGDYAFMLRDYELALSNYRL 361
            RKGFRNQ+KNLWWRKGKE+T DS +GPMYTFSSIESQIR+LGDYAFML DYELALSNYRL
Sbjct: 301  RKGFRNQIKNLWWRKGKEDTPDSLDGPMYTFSSIESQIRVLGDYAFMLWDYELALSNYRL 360

Query: 362  ISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRC 421
            ISTDYKLDKAWKRYAGVQEMMGL YFMLDQSRKEAEYCMENAF+TY K+G SGQQNA RC
Sbjct: 361  ISTDYKLDKAWKRYAGVQEMMGLAYFMLDQSRKEAEYCMENAFSTYLKMGLSGQQNAVRC 420

Query: 422  GLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVL 481
            GLWWVEMLK R QYK+AA VYFRIC EE LHSAVMLEQASYCYLLS+PPMLHKYGFHLVL
Sbjct: 421  GLWWVEMLKTRDQYKEAAAVYFRICSEEILHSAVMLEQASYCYLLSQPPMLHKYGFHLVL 480

Query: 482  SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541
            SGDRY+KCDQI HAIRTYRSA+SVYKG+TWS+IKDHV+FHIGQWYA LGM+D+AV HMLE
Sbjct: 481  SGDRYRKCDQIKHAIRTYRSAISVYKGTTWSYIKDHVYFHIGQWYAFLGMYDVAVTHMLE 540

Query: 542  ------------------------KTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEA 577
                                    KTGKTFE ++ +LP+INISSLK++FEDHRTYAS   
Sbjct: 541  VLTCSHQSKTTQELFLQEFLQIVQKTGKTFEALRLQLPVINISSLKLVFEDHRTYASPAV 600

Query: 578  ANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPL 637
            A+VRES+WRSLEEDMIPSLS A+SNWLELQSK++ K F+++NICVAGE +KV IEF+NPL
Sbjct: 601  ASVRESVWRSLEEDMIPSLSAAKSNWLELQSKVVPKSFKDANICVAGEAIKVRIEFQNPL 660

Query: 638  QIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEV 697
            +IPIS+S++SLICELS  SD+M SD+ SS TE QNDEE K L   G++ SD S FTLSE 
Sbjct: 661  KIPISLSSVSLICELSG-SDDMNSDAGSSATEHQNDEECKKL---GDLTSDNSLFTLSEA 716

Query: 698  DISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVK 757
            D +L G E ILV L VTPKVEG LKIVG+RW+LSGS++G YN ESNLVK KI KGRRK K
Sbjct: 717  DFTLEGDEKILVHLTVTPKVEGSLKIVGIRWKLSGSVLGYYNLESNLVKGKITKGRRKAK 776

Query: 758  SSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPR 817
             SP + LKFIVIK+LPKLEG+IH LPE+AYAGDLRHLVLEL+NQS+FSVKNLKMK+S+PR
Sbjct: 777  HSPKSYLKFIVIKNLPKLEGIIHSLPEKAYAGDLRHLVLELRNQSEFSVKNLKMKISNPR 836

Query: 818  FLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLW 877
            F+SIGN +D+  E P CL+K T  EQ     +  K    +F FPE ISI+ E PL WPLW
Sbjct: 837  FMSIGNGEDLNCEIPECLEKKTEFEQISVPADSKKELHDIFVFPEDISIEREKPLSWPLW 896

Query: 878  YRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYL 937
             RAAVPGKISL + +YYEMGD SS+++YR LRM Y+L+VLPSL++SF ISP  SRLQ++L
Sbjct: 897  LRAAVPGKISLYMVVYYEMGDASSIMRYRTLRMQYDLQVLPSLDLSFAISPCPSRLQEFL 956

Query: 938  VRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGE 997
            VRMD+VN+TSSE+FQ++QLS VGHQWEISLLQP D+IFPS+SL AGQA SCFFMLK+R +
Sbjct: 957  VRMDLVNKTSSESFQVNQLSCVGHQWEISLLQPPDAIFPSQSLIAGQAFSCFFMLKSRRK 1016

Query: 998  SSTSSDDTSSPSRLLGSDVSL--QGTADTLFDISGSPLADFHAHERLLQRVS-QDDTNTV 1054
            S  + +   S SR  GSDV L  + + +TLFDIS SPLADFH +ERL    S Q+  NTV
Sbjct: 1017 SLGTGEKILSLSRFPGSDVRLTPEDSKNTLFDISSSPLADFHDYERLQHETSNQESVNTV 1076

Query: 1055 DFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEV 1114
            D I IS+P KSD+ +GIS+P HLFSHHACHCS    +PI+W+VDGPR   H F+ASFCEV
Sbjct: 1077 DLILISRPLKSDNATGISNPPHLFSHHACHCSTASTSPISWIVDGPRFRRHKFSASFCEV 1136

Query: 1115 NLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVT 1174
            NL+M +YNSSDA   V +NT DS S +GQ S+A    SAV S NQ GWH + +  DIK+ 
Sbjct: 1137 NLRMLVYNSSDAVASVAINTLDSTSGNGQLSDA----SAVTSRNQTGWHHLSLENDIKII 1192

Query: 1175 SQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALN 1234
            S +P   V R    ESVSPFIWSGSS++ ++L+P+S+T+I +++C+FSPGTYDLSNY LN
Sbjct: 1193 SDVPETNVARLQSPESVSPFIWSGSSSTRIQLEPLSSTEIPLQICVFSPGTYDLSNYVLN 1252

Query: 1235 WKLLTISGQGN 1245
            W L  ++ +GN
Sbjct: 1253 WNLQPVNNEGN 1263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359481103\|ref\|XP_002263641.2\| PREDICTED: trafficking protein particle complex subunit 8-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296089365\|emb\|CBI39137.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449437874\|ref\|XP_004136715.1\| PREDICTED: trafficking protein particle complex subunit 8-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356503854\|ref\|XP_003520717.1\| PREDICTED: trafficking protein particle complex subunit 8-like [Glycine max]	Back alignment and taxonomy information

>gi\|356572629\|ref\|XP_003554470.1\| PREDICTED: trafficking protein particle complex subunit 8-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356572633\|ref\|XP_003554472.1\| PREDICTED: trafficking protein particle complex subunit 8-like isoform 3 [Glycine max]	Back alignment and taxonomy information

>gi\|356572631\|ref\|XP_003554471.1\| PREDICTED: trafficking protein particle complex subunit 8-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|334187710\|ref\|NP_197132.2\| uncharacterized protein [Arabidopsis thaliana] gi\|332004885\|gb\|AED92268.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|334187712\|ref\|NP_001190319.1\| uncharacterized protein [Arabidopsis thaliana] gi\|332004886\|gb\|AED92269.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1269
FB\|FBgn0260655		1319	l(3)76BDm "lethal (3) 76BDm" [	0.229	0.220	0.356	5.2e-74
UNIPROTKB\|Q9Y2L5		1435	TRAPPC8 "Trafficking protein p	0.223	0.197	0.347	8.6e-65
ASPGD\|ASPL0000063455		741	AN7311 [Emericella nidulans (t	0.244	0.418	0.266	4.8e-19
WB\|WBGene00018512		1282	F46F11.9 [Caenorhabditis elega	0.125	0.124	0.275	3.2e-18
POMBASE\|SPBC1734.07c		618	SPBC1734.07c "TRAPP complex su	0.225	0.462	0.259	1.5e-13
CGD\|CAL0001244		759	GSG1 [Candida albicans (taxid:	0.073	0.122	0.336	5.2e-06
UNIPROTKB\|Q59M23		759	GSG1 "Putative uncharacterized	0.073	0.122	0.336	5.2e-06
POMBASE\|SPBC1604.19c		658	SPBC1604.19c "TRAPP complex su	0.115	0.221	0.294	0.00018

FB\|FBgn0260655 l(3)76BDm "lethal (3) 76BDm" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 452 (164.2 bits), Expect = 5.2e-74, Sum P(3) = 5.2e-74
 Identities = 109/306 (35%), Positives = 163/306 (53%)

Query:   244 NPWASHKSDASPSKHLGSFLNNDDFSEIKDVMQELASKHIIPYMEQKIRVLNQQVSATRK 303
             N W +     +P  H G  L + D   ++  +Q+ A + +IPY+E  + +L + V+  +K
Sbjct:   333 NVWGNELEADAP--H-GGCLTSRDIDNLRHFVQDYAVRALIPYIEHLVAILAEGVT-NKK 388

Query:   304 GFRNQLKNL---WWRKGKEET-SDSPNGPMYTFSSIESQIRILGDYAFMLRDYELALSNY 359
             G    L +    W+   K    +++ N  +YT  S E Q R LGD  FM   Y LA  +Y
Sbjct:   389 GVSKSLLSATKRWFVTSKPGAGANNQNAVIYTNESAELQTRKLGDLYFMFGHYNLAFQSY 448

Query:   360 RLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQS-RKEAEYCMENAFTTYAKIGSSGQQNA 418
                  D+  D AW+ YAG  EM  L+ FML  + RK  +Y ME+A   Y  +    QQ A
Sbjct:   449 HQAKRDFNADSAWQYYAGALEMAALSAFMLGTAQRKTYDY-MEDAIVCYLTVCKL-QQFA 506

Query:   419 TRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKPPMLHKYGF 477
             TR  L  +E LK    Y + A    R+  EE  L SA++LEQA+YC+L+++PPM  KY F
Sbjct:   507 TRATLLSMECLKTARLYSEVAKQLIRMTNEESDLRSALLLEQAAYCFLVTQPPMHRKYAF 566

Query:   478 HLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIG-QWYAVLGMHDIA- 535
             H+VL+G+RY +  Q  HA R YR A  V++   WS  +DH+ + +  Q Y +  + + + 
Sbjct:   567 HIVLAGNRYSRAGQRKHAYRCYRQAYQVFQKREWSLAEDHIQYTVAKQAYMLKQLEEASR 626

Query:   536 -VAHML 540
               AH+L
Sbjct:   627 SFAHLL 632

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB\|Q9Y2L5 TRAPPC8 "Trafficking protein particle complex subunit 8" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000063455 AN7311 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

WB\|WBGene00018512 F46F11.9 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

POMBASE\|SPBC1734.07c SPBC1734.07c "TRAPP complex subunit Trs85 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

CGD\|CAL0001244 GSG1 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q59M23 GSG1 "Putative uncharacterized protein GSG1" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

POMBASE\|SPBC1604.19c SPBC1604.19c "TRAPP complex subunit Trs85 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1269
pfam12739		390	pfam12739, TRAPPC-Trs85, ER-Golgi trafficking TRAP	1e-127
pfam08626		1183	pfam08626, TRAPPC9-Trs120, Transport protein Trs12	2e-04

>gnl\|CDD\|221746 pfam12739, TRAPPC-Trs85, ER-Golgi trafficking TRAPP I complex 85 kDa subunit	Back alignment and domain information

 Score =  396 bits (1020), Expect = e-127
 Identities = 143/392 (36%), Positives = 203/392 (51%), Gaps = 33/392 (8%)

Query: 160 SSEDEQPINRFIDLFNTNKLPSLLNDGAMDPKILKHYLLVHDNQDGPS-EKASKILTEMR 218
           SS +  PI     LF     P L     +D  IL+HY+LVHD  DG   E++  +L +++
Sbjct: 1   SSTNPDPIEDLRKLFKELNNPPLPFPVQLD--ILRHYVLVHDESDGDDEERSQALLEQLK 58

Query: 219 STFGPNDCQLLCINSSEDGRIERQD----NPWASHKSD---ASPSKHLGSFLNNDDFSEI 271
            TFG  +C LL +NSS        D    + W+S   D    S +   G +L+  D   I
Sbjct: 59  RTFGLCNCHLLRLNSSSSESAALTDDDPPDEWSSALEDLQEISSAGPEGVYLSVSDVEAI 118

Query: 272 KDVMQELASKHIIPYMEQKIRVLNQQVSATRKGFRNQLK---NLWWRKGKEETSDSPNGP 328
           +  ++E  ++ +IP+ME+K+R LN Q++A RKG   +       W+      ++ S N  
Sbjct: 119 RAFVREFVTQSLIPFMERKVRFLNDQIAAPRKGITGRFFSASKKWFGSSGASSASSSNSS 178

Query: 329 M--YTFSSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTY 386
              Y+  S E+QIR L D +FMLRDY+LA S Y L+  D+K DKAWK  AG QEM  L+ 
Sbjct: 179 CAYYSADSPEAQIRKLADLSFMLRDYKLAYSTYDLLKKDFKNDKAWKYLAGAQEMAALSL 238

Query: 387 FMLDQSR------KEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAAT 440
            M  QS       +E +  +ENA  TY K        ATRC L   E+LK+R  Y++AA 
Sbjct: 239 LMGGQSISAKIRKEEIDPYLENAMYTYLKRCLRSPYYATRCALLSAELLKSRGGYREAAD 298

Query: 441 VYFRICGEE-----PLHSAVMLEQASYCYLL-------SKPPMLHKYGFHLVLSGDRYKK 488
              R   E       + SA++LE+A+YCY         S    L K  FH+VL+G R+ K
Sbjct: 299 ALARWSSEILQDLGAVGSALLLERAAYCYASLQSDPPMSGGTRLRKAAFHMVLAGHRWSK 358

Query: 489 CDQINHAIRTYRSAVSVYKGSTWSHIKDHVHF 520
             Q   A+R Y+ A+ VY+G  WS  +DH+ F
Sbjct: 359 AGQKALALRCYKEALPVYEGKGWSLAEDHLLF 390

This family is one of the subunits of the TRAPP Golgi trafficking complex. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II, and this Trs85 is in the smaller complex. TRAPP I, but Not TRAPP II, functions in ER-Golgi transport. Trs85p was reported to function in the cytosol-to-vacuole targeting pathway, suggesting a role for this subunit in autophagy as well as in secretion. The overall architecture of TRAPP I shows the other components to be Bet3p (TRAPPC3), Bet5p (TRAPPC1), Trs20p (TRAPPC2), Trs23p (TRAPPC4), Trs31p (TRAPPC5), Trs33p (TRAPPC6a and b) and Trs85p. Length = 390

>gnl\|CDD\|219942 pfam08626, TRAPPC9-Trs120, Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1269
KOG1938		960	consensus Protein with predicted involvement in me	100.0
PF12739		414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	100.0
PF08626		1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	100.0
KOG1953		1235	consensus Targeting complex (TRAPP) subunit [Intra	99.85
KOG1938		960	consensus Protein with predicted involvement in me	99.73
PF07919		554	Gryzun: Gryzun, putative trafficking through Golgi	99.42
PF06159		249	DUF974: Protein of unknown function (DUF974); Inte	98.01
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.75
COG1470		513	Predicted membrane protein [Function unknown]	97.11
KOG1840		508	consensus Kinesin light chain [Cytoskeleton]	96.37
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.36
KOG1586		288	consensus Protein required for fusion of vesicles	96.03
PF11817		247	Foie-gras_1: Foie gras liver health family 1; Inte	95.92
PRK11447		1157	cellulose synthase subunit BcsC; Provisional	95.8
KOG1840		508	consensus Kinesin light chain [Cytoskeleton]	95.76
KOG1585		308	consensus Protein required for fusion of vesicles	95.48
PF13429		280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	95.4
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	95.06
PRK11788		389	tetratricopeptide repeat protein; Provisional	94.99
TIGR03302		235	OM_YfiO outer membrane assembly lipoprotein YfiO.	94.85
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	94.73
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	94.7
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	94.63
PRK11788		389	tetratricopeptide repeat protein; Provisional	94.62
PF10633		78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	94.13
PF00927		107	Transglut_C: Transglutaminase family, C-terminal i	94.03
PF07705		101	CARDB: CARDB; InterPro: IPR011635 The APHP (acidic	94.02
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	93.53
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	93.35
KOG2625		348	consensus Uncharacterized conserved protein [Funct	93.16
PF14874		102	PapD-like: Flagellar-associated PapD-like	93.03
PRK11447		1157	cellulose synthase subunit BcsC; Provisional	92.84
KOG1941		518	consensus Acetylcholine receptor-associated protei	92.75
KOG1586		288	consensus Protein required for fusion of vesicles	91.7
cd05804		355	StaR_like StaR_like; a well-conserved protein foun	91.23
KOG2076		895	consensus RNA polymerase III transcription factor	90.9
PRK09782		987	bacteriophage N4 receptor, outer membrane subunit;	90.87
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	90.87
KOG1155		559	consensus Anaphase-promoting complex (APC), Cdc23	90.78
PRK04841		903	transcriptional regulator MalT; Provisional	90.22
KOG1126		638	consensus DNA-binding cell division cycle control	90.19
PF13525		203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	89.68
PF13424		78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	88.86
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	88.39
PF12895		84	Apc3: Anaphase-promoting complex, cyclosome, subun	87.63
PRK12370		553	invasion protein regulator; Provisional	87.55
KOG1173		611	consensus Anaphase-promoting complex (APC), Cdc16	87.06
PRK04841		903	transcriptional regulator MalT; Provisional	86.9
cd05804		355	StaR_like StaR_like; a well-conserved protein foun	86.23
PF13432		65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	86.16
PRK10747		398	putative protoheme IX biogenesis protein; Provisio	85.41
PRK10370		198	formate-dependent nitrite reductase complex subuni	85.25
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	84.13
PF09976		145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	83.06
TIGR00540		409	hemY_coli hemY protein. This is an uncharacterized	82.72
PRK15179		694	Vi polysaccharide biosynthesis protein TviE; Provi	82.15
KOG2002		1018	consensus TPR-containing nuclear phosphoprotein th	81.76
PF09986		214	DUF2225: Uncharacterized protein conserved in bact	81.67
TIGR02795		119	tol_pal_ybgF tol-pal system protein YbgF. Members	81.65
PF13414		69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	81.18
KOG1125		579	consensus TPR repeat-containing protein [General f	80.94
TIGR03302		235	OM_YfiO outer membrane assembly lipoprotein YfiO.	80.66
KOG2002		1018	consensus TPR-containing nuclear phosphoprotein th	80.51
KOG1130		639	consensus Predicted G-alpha GTPase interaction pro	80.4

>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=9.3e-106  Score=968.91  Aligned_cols=910  Identities=27%  Similarity=0.372  Sum_probs=700.6

Q ss_pred             cCCCCCcccccceEEEEEEeCCCCChhhHHHhhhccCCCCccccCCCCCcCCceEEEEEecCCCCChHHHHHHHHHHHhh
Q 000815          141 VSFSEHEAFDHPVACLLVVSSEDEQPINRFIDLFNTNKLPSLLNDGAMDPKILKHYLLVHDNQDGPSEKASKILTEMRST  220 (1269)
Q Consensus       141 ~~~s~hEtf~HPva~llvvSs~~~~pie~~~~L~~~~~~P~~~~~~~~d~~il~~yvLlHD~~~~~~~~a~~ll~~mK~~  220 (1269)
                      +.+++||++|        +||+++.|      ++  +.+|.     |+.|++|||||||||+++|+. +++++|++||++
T Consensus         1 ~~~sdhe~~~--------~ss~~~~p------~~--~s~pk-----w~~p~~l~~yvllhd~~~~~~-r~~~~~~~m~s~   58 (960)
T KOG1938|consen    1 MIQSDHEFYN--------TSSTDMEP------QH--NSLPK-----WFAPNTLKHYVLLHDSSSGDS-RADELLEEMKST   58 (960)
T ss_pred             CCccchhhhh--------cccccccc------cc--cCCcc-----cccccccceeEEEecCCCcch-hHHHHHHHHHHH
Confidence            4679999999        89999999      33  34888     566799999999999999998 999999999999


Q ss_pred             cCCCceEEEEecCCCCCCCcCCCCCCCCCCCCCCCCCCCcccC-----ChhhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 000815          221 FGPNDCQLLCINSSEDGRIERQDNPWASHKSDASPSKHLGSFL-----NNDDFSEIKDVMQELASKHIIPYMEQKIRVLN  295 (1269)
Q Consensus       221 fG~~~c~lL~inS~~~~~~~~~~d~w~~~~~~~~~~~~~~~~L-----~~~D~~~ir~fv~e~v~~~liP~mEr~I~~ln  295 (1269)
                      ||.++|+||+|||...  ....+|||.+++...+-. +.+|.|     +..|.++|++|+++|..++++||||+.+|.++
T Consensus        59 ~g~~~c~ll~~ns~~~--~~~~~~~w~~~~~~~~~~-~~~~~~~g~d~~~~d~~~i~~ilq~f~~r~lipy~E~~vr~l~  135 (960)
T KOG1938|consen   59 YGNDNCQLLQINSDSE--SAEMPDPWAEFDEFNSVL-HSTPGLNGADSTVFDYEHIMDILQHFANRALIPYIEKAVRILL  135 (960)
T ss_pred             hCCCceeEEEecCcch--hhhcCChHHHHhhccchh-hccCCCCCccchhhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            9999999999999865  678999999987654322 111223     45667999999999999999999999999999


Q ss_pred             HhhhccCcCchhhh--hHhhhcCCCCCCCCCCCCCCccCCChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchh
Q 000815          296 QQVSATRKGFRNQL--KNLWWRKGKEETSDSPNGPMYTFSSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWK  373 (1269)
Q Consensus       296 e~v~~~RKgi~~~l--~~~w~r~~k~~~~~~~~~~~Y~~~S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~  373 (1269)
                      |+|.+ |||+++.|  ++.||.. +...+++..+.+|+.++.|+|+||+||++||+|+|..|+..|+..++||++|+||.
T Consensus       136 e~i~~-~KGvs~sf~~~~rwfig-s~y~p~~~~~ilys~ds~e~q~Rk~aD~~~~f~h~~~a~~~y~stkrd~~nd~am~  213 (960)
T KOG1938|consen  136 EQIAQ-KKGVSSSFSATKRWFIG-STYAPDNTLGILYSFDSGEFQTRKGADLLFMFGHPNLAFDAYHSTKRDFNNDKAMV  213 (960)
T ss_pred             Hhhhc-cccchhchhHHHHHHhc-CccCCCCcceeEecccchHHhhhhccchhhhhccccchhhhhhhhhcchhhhhHHh
Confidence            99996 99999994  4567643 33445566889999999999999999999999999999999999999999999999


Q ss_pred             hhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCc-hh
Q 000815          374 RYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LH  452 (1269)
Q Consensus       374 ~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~-l~  452 (1269)
                      |+||++||+++++|++++..+.+.+|||+|+.+|...+++ ++.|.||+++++|+++.+|.|.|||..++|++++++ ++
T Consensus       214 ~~a~alEm~sls~Fvq~~a~q~~sqyme~a~~~~~~i~k~-~~~A~rc~l~~aei~k~~~lh~eaa~~~~r~~see~dl~  292 (960)
T KOG1938|consen  214 YYAGALEMRSLSAFVQPDATQFPSQYMENAFPLYRLILKN-YQDANRCVLNSAEILKFLGLHKEAAEALARETSEEGDLL  292 (960)
T ss_pred             HhhhhhhhhhhhhhcCCcchhhHHHHHhhhhHHHHHHHhh-ccchhhhccCchHHHHHHHHHHHHHHHHHHhhCcCchhh
Confidence            9999999999999999988877889999999999988877 689999999999999999999999999999999886 99


Q ss_pred             hHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCH
Q 000815          453 SAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMH  532 (1269)
Q Consensus       453 sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~  532 (1269)
                      +||++||||+||..++|+|.||++||+||||+||.+|||+.||+|||++|+++|+++.|..+++|++|++++ .|.+-+.
T Consensus       293 ~allleqaal~f~~tkp~m~~ktffHpVLal~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~-~y~l~~~  371 (960)
T KOG1938|consen  293 SALLLEQAALCFGSTKPPMPRKTFFHPVLALIRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILH-VYLLCQE  371 (960)
T ss_pred             hHHHHHHHHHHhhcCCCCccchhhcceeehhhhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHH-hhhhhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999 6776666


Q ss_pred             HHHH---HHHHH----------------------hcCCCCccCCCC-ccEEeeCceEEEecCC--CCccccccchh----
Q 000815          533 DIAV---AHMLE----------------------KTGKTFEVVKPR-LPIINISSLKVIFEDH--RTYASAEAANV----  580 (1269)
Q Consensus       533 ~~Av---~hll~----------------------~~~~~~~~~~Lp-LP~I~~~~irV~~~~~--~~~~~~~~~~~----  580 (1269)
                      |+|.   +|++.                      ...+..++++++ +|.++.+.++|++++.  ++++......+    
T Consensus       372 D~a~~~f~~~i~~~~kqS~~~q~~FLRl~~~~~s~~~~~t~v~~l~~lp~l~~e~~~vi~~~~~~~t~~e~~~at~~~~~  451 (960)
T KOG1938|consen  372 DDADEEFSKLIADCMKQSKGLQTEFLRLYSNKDSFIYDHTPVVQLPQLPMLSMEERLVILSEPTRSTDAEALPATHQYLV  451 (960)
T ss_pred             hhHHHHHHHHHhhhhhcChHHHHHHHHHHHHHhhcccccCCccccCCcchhhhhHHHHHhcCCCCCcchhhhhhhhhhcc
Confidence            6554   33333                      123344788888 9999999999999984  44444333333    


Q ss_pred             hHHhhHhhhhhccccccccccchhHhhhhhh-hhhcccCCccccCceEEEEEEEECcccCcEEeEEEEEEEEeccCCccc
Q 000815          581 RESLWRSLEEDMIPSLSTARSNWLELQSKLI-MKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEM  659 (1269)
Q Consensus       581 ~~~~W~~lEe~lv~s~~~~~~~w~~~~~~~~-~k~~~~~~~~vvgE~i~V~V~L~NPL~ipL~ls~I~Ll~~~~~~~~~~  659 (1269)
                      .+.+|..||++.+..++.+..+|...+-... ..+..+.+++|+||++++.|+++|||++++.+++++|+|++...+. .
T Consensus       452 sd~~w~~lEr~~s~~~~~~~~p~~~~ql~~~~~~~~~~~~v~v~Ge~~~l~v~~rnpl~~~~alT~~~ll~kl~~~~~-s  530 (960)
T KOG1938|consen  452 SDNIWPSLERKSSHILFAGSQPFRPSQLLLAEFSDKFKNPVPVAGEPIKLSVTLRNPLKISIALTNSSLLWKLHLDNL-S  530 (960)
T ss_pred             ccccchhHHHHHHHHHhcccCCCcchhcccchhccccccccccCCcceeeEEeecCccceeccccchhhhhhcccccc-c
Confidence            6679999999976555555555533222111 2344568999999999999999999999999999999999976322 2


Q ss_pred             ccCCCCCccccccccccccccccccCCCCCCceeeeeeeEEEcCCceEEEEEEEEeCceeEEEEEEEEEEE------ccc
Q 000815          660 ESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRL------SGS  733 (1269)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L~p~Etk~v~L~~~P~~~G~L~I~Gv~~~L------~~~  733 (1269)
                      ..++..+...       ..|..+     +.    .....+.+.+.|.+++.|...|+..|.++|.|..++.      .+.
T Consensus       531 ~~~Na~s~~~-------~~Pe~~-----~~----s~~~~~~~~~~e~~t~~L~dfp~~~g~lkii~~v~~~~~~~vd~as  594 (960)
T KOG1938|consen  531 GSSNAYSHSQ-------SSPELI-----DD----SAFPELLKSGEEDFTFMLRDFPRAIGILKIIRNVVNPLIEDVDAAS  594 (960)
T ss_pred             cccccccccc-------cChhhh-----hh----hhHHHHHhcchhceeeeeeeccccceEEeeeeccccchhcccchhh
Confidence            2222211000       001000     00    1123688999999999999999999999999999999      567


Q ss_pred             eeeeecccccchhhhhcccC-ccccCCCCCceEEEEecCCCeEEEEEccCCccccCCcEEEEEEEEEecCccccceEEEE
Q 000815          734 LVGVYNFESNLVKKKIAKGR-RKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMK  812 (1269)
Q Consensus       734 v~g~~~F~~~g~rl~~tk~r-~~~~~~pd~rL~~~V~~~~P~Lev~~~~~P~~ll~GEi~~~~l~L~N~g~~pv~~l~l~  812 (1269)
                      +.|...|+++|+|++.++++ .+.++++|.||.+.+.+.+|.|+++|+++|..+||||++++.|+++|.|.+|+.+|+++
T Consensus       595 ~yg~~~le~qgirl~~~~~~~~s~~~t~d~RL~~~~~e~lp~levs~~s~P~~lyagq~r~~~le~~nls~~P~~~v~~a  674 (960)
T KOG1938|consen  595 VYGACSLEIQGIRLNNTKLDVTSSKLTNDTRLNILASEMLPLLEVSFTSFPQWLYAGQAREVLLELRNLSPCPAISVDLA  674 (960)
T ss_pred             hhcccchhhhhcchhhhcccccccccChHHHHHHHHHhhhhhhheeeecCcchHHHHHHHHHHHHhhhcCCCchhhHHHH
Confidence            88999999999999888754 47899999999998899999999999999999999999999999999999999999999


Q ss_pred             ecCCceEEeCCCCCCCccchhhhhccccccccccCCCCCCCCCceeccCCCcccCCCCeEEEEEEEEecCCceeEEEEEE
Q 000815          813 VSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITI  892 (1269)
Q Consensus       813 ~s~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~L~pGes~~~plwlra~~~G~~~l~~Lf  892 (1269)
                      +++|+| .     ..+...+.+...+ ..++......   +.......+.++.|.+|+++++++|+|++..+.     -+
T Consensus       675 ~s~~~~-~-----~l~n~s~~~~~~~-~a~i~~~~t~---r~~~~s~~~~d~~l~g~r~rr~alW~r~~a~~~-----~~  739 (960)
T KOG1938|consen  675 ASWPYF-A-----VLENESHRKGKMN-AANISQQETT---RFESGSGSDEDIVLDGGRRRRAALWFRLSAEAS-----KP  739 (960)
T ss_pred             hcChhh-h-----hcccccccccccC-Hhhhhhhhhh---hhccccCCCcccccCCCceeeeeeeEecccccc-----cc
Confidence            999977 1     1111122333222 1111110000   111222345678999999999999999997660     11


Q ss_pred             EEecCCCcccceEEEEEEEEEEEEecceeEEEEEEeeccccceEEEEEEEEeCCCCccEEEEEEEeeecceeEeecCCCC
Q 000815          893 YYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFD  972 (1269)
Q Consensus       893 yYe~~~~~~~~~~R~~R~~~~l~V~pSL~vs~~~~~s~s~~~e~~v~v~V~N~~~~e~f~l~qvs~vS~~W~l~~l~~~~  972 (1269)
                      +++                              +.+++.       .+..-|.....-..+++++.++-.|.....+.-.
T Consensus       740 w~r------------------------------~~~~r~-------~~~~~n~a~~~y~~i~~~~~s~~~l~~~~~~~e~  782 (960)
T KOG1938|consen  740 WLR------------------------------QRQWRR-------ASWCLNTAKSTYSKIHWLSLSECILSKSLNLSEN  782 (960)
T ss_pred             hHH------------------------------hhhhhh-------hhhhhhccccceeeeeeeehhhhhhhhhccchhh
Confidence            211                              011110       1122222222236777777777778888777655


Q ss_pred             ccCCcccccccceEEEEEEEeecCCCCCCCCCCCCCCccccCceee--cCCCcccccccCCcchhhhHHHhhhhhcccCC
Q 000815          973 SIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSL--QGTADTLFDISGSPLADFHAHERLLQRVSQDD 1050 (1269)
Q Consensus       973 ~~~~~~~~~~~q~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~d~~l--~~~~~~~~~~s~~p~~~f~~~~~~~~~~~~~~ 1050 (1269)
                      +..|+.....++.++++++.+.+...++..++.      .+.-+.+  .+.....++.+++|.+.|+         ...+
T Consensus       783 ~dvpsa~~~~~~~ls~~~~~~~~~~~~~e~e~~------i~~~~~~~s~~~~~~~~~~~st~~~~~~---------~~~~  847 (960)
T KOG1938|consen  783 TDVPSAFTPSGKNLSRTSVSFIGRAVEIESEQP------IVARLVPLSQGETIKFFWLTSTTEVTPP---------AEIQ  847 (960)
T ss_pred             ccCccccCccccccceeeeccccccccccccCC------cccceeeccCCcchhhhhhccccccCCC---------hhhc
Confidence            566777788899999999988887665532331      2222333  2122333445555555444         1112


Q ss_pred             CCcceEEEEecccccCCCCCCCCCccccceeeecccccccCceEEEEecCceeeccCCCcceeEeEEEEEEcCCCccEeE
Q 000815         1051 TNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFV 1130 (1269)
Q Consensus      1051 ~~~~~~i~~w~~~~~~~~~~~~~~~~~g~~h~~~~~~~~~~~i~~~l~~p~~~~h~f~~~~c~v~~~l~l~N~s~~~~~~ 1130 (1269)
                      ...=+|.+.|+|.+++|            ||+..           .+-++-+++|.|....|.+..++.+.|.++..-+ 
T Consensus       848 ~~~~~i~~~w~a~vv~~------------eg~~~-----------~~g~~~~l~~~f~~~~~~~~~~~s~~~~~~~i~~-  903 (960)
T KOG1938|consen  848 STMDTIVILWKANVVND------------EGVTR-----------FIGPFVKLKKLFKTDSCLSSLRISCETTSKEISH-  903 (960)
T ss_pred             cChhhHHHhcccccccc------------cceee-----------ecCCcceehhhccCCcccccchhhhhhhhhhcch-
Confidence            22234889999998877            12111           1127889999999999999999999999985432 


Q ss_pred             EEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccccccccCCccccccCCccCcCCceEEeccccceeEecCCc
Q 000815         1131 RVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMS 1210 (1269)
Q Consensus      1131 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~W~g~~~~~~~l~p~~ 1210 (1269)
                         |.+.-..        -+.+....+|+-||.+|+....-                    .  .|.|.++|++|++++|
T Consensus       904 ---t~~~~~~--------~p~t~~~~n~~~~~~~v~~~~~~--------------------~--~w~~~~~~k~q~~~~~  950 (960)
T KOG1938|consen  904 ---TADHLCE--------LPITLLISNNDLAWRPVSVSIEE--------------------S--SWIGRPVYKQQIGILE  950 (960)
T ss_pred             ---hhhhhhc--------ccchhhhcCCcccccccchhhhh--------------------h--cccCCcceeeeecccc
Confidence               3332222        13445678899999988655441                    1  1999999999999999


Q ss_pred             eeeEeeEEEE
Q 000815         1211 TTDIAMKVCL 1220 (1269)
Q Consensus      1211 ~~~~~L~~~~ 1220 (1269)
                      .++++|++|+
T Consensus       951 ~~~~~m~~~~  960 (960)
T KOG1938|consen  951 EASLEMKWKI  960 (960)
T ss_pred             cceeeeEecC
Confidence            9999999986

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []	Back alignment and domain information

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway	Back alignment and domain information

>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function	Back alignment and domain information

>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>COG1470 Predicted membrane protein [Function unknown]	Back alignment and domain information

>KOG1840 consensus Kinesin light chain [Cytoskeleton]	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []	Back alignment and domain information

>PRK11447 cellulose synthase subunit BcsC; Provisional	Back alignment and domain information

>KOG1840 consensus Kinesin light chain [Cytoskeleton]	Back alignment and domain information

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known	Back alignment and domain information

>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds	Back alignment and domain information

>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>KOG2625 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14874 PapD-like: Flagellar-associated PapD-like	Back alignment and domain information

>PRK11447 cellulose synthase subunit BcsC; Provisional	Back alignment and domain information

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]	Back alignment and domain information

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals	Back alignment and domain information

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]	Back alignment and domain information

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK04841 transcriptional regulator MalT; Provisional	Back alignment and domain information

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A	Back alignment and domain information

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK04841 transcriptional regulator MalT; Provisional	Back alignment and domain information

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals	Back alignment and domain information

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B	Back alignment and domain information

>PRK10747 putative protoheme IX biogenesis protein; Provisional	Back alignment and domain information

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

>TIGR00540 hemY_coli hemY protein	Back alignment and domain information

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional	Back alignment and domain information

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function	Back alignment and domain information

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF	Back alignment and domain information

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A	Back alignment and domain information

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO	Back alignment and domain information

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1269
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 64.9 bits (157), Expect = 1e-10
 Identities = 72/539 (13%), Positives = 155/539 (28%), Gaps = 166/539 (30%)

Query: 10  GKMLLDEITPVVMVLRTPLVEESCGKNGI------------SLLQMLSPFCNFSNIDVPV 57
           GK  +      + V  +  V+       I            ++L+ML        ID   
Sbjct: 162 GKTWV-----ALDVCLSYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQKLL--YQIDPNW 213

Query: 58  RTASDQ----PYRLHKFKLRL-------VYES------DIRHPN-LEVAKEQLKQVITRT 99
            + SD       R+H  +  L        YE+      ++++           K ++T T
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT-T 272

Query: 100 GEKELSE-LGSDPT------EISDVVGRSES-EILPSWFQLFNKELMHTVSFSEHEAFD- 150
             K++++ L +  T        S  +   E   +L  +     ++L         E    
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-------PREVLTT 325

Query: 151 HPVACLLVVSSEDEQP--INRFIDLFNTNKLPSLLNDGAMDPKILKHYLLVHDNQDGPSE 208
           +P    ++  S  +     + +  + N +KL            I++  L   +  + P+E
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHV-NCDKLT----------TIIESSL---NVLE-PAE 370

Query: 209 KASKILTEMRSTFGPNDCQLLCINSSEDGRIERQDNPWASHKSDASPSKHLGSFLNNDDF 268
                    R  F  +   +          I               P+  L     +   
Sbjct: 371 --------YRKMF--DRLSVF----PPSAHI---------------PTILLSLIWFDVIK 401

Query: 269 SEIKDVMQELASKHIIPYMEQKIRVLNQQVSATRKGFRNQLKNLWWRKGKEETSDSPNGP 328
           S++  V+ +L              ++ +Q     K     + +++    K +  +     
Sbjct: 402 SDVMVVVNKLHKY----------SLVEKQ----PKESTISIPSIYLEL-KVKLENEY--- 443

Query: 329 MYTFSSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFM 388
                       I+  Y    + ++   S+   +   Y LD+ +  + G        + +
Sbjct: 444 -------ALHRSIVDHYNI-PKTFD---SDD--LIPPY-LDQYFYSHIG--------HHL 481

Query: 389 LDQSRKEAEYCMENAFTTY----AKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFR 444
            +    E        F  +     KI            +  +  L+    YK        
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI--LNTLQQLKFYKP------Y 533

Query: 445 ICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAV 503
           IC  +P +  ++     +         L K   +L+      K  D +  A+     A+
Sbjct: 534 ICDNDPKYERLVNAILDF---------LPKIEENLI----CSKYTDLLRIALMAEDEAI 579

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1269
d1qqea_		290	Vesicular transport protein sec17 {Baker's yeast (	97.55
d1qqea_		290	Vesicular transport protein sec17 {Baker's yeast (	96.87
d1ex0a3		100	Transglutaminase, two C-terminal domains {Human (H	96.86
d1hz4a_		366	Transcription factor MalT domain III {Escherichia	96.86
d1g0da3		101	Transglutaminase, two C-terminal domains {Red sea	96.75
d1vjja3		99	Transglutaminase, two C-terminal domains {Human (H	96.07
d2q3za3		98	Transglutaminase, two C-terminal domains {Human (H	95.79
d1w3ba_		388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	95.4
d1fcha_		323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.15
d1w3ba_		388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	91.4
d2c2la1		201	STIP1 homology and U box-containing protein 1, STU	87.48
d1xnfa_		259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	85.2
d1hz4a_		366	Transcription factor MalT domain III {Escherichia	83.31

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.55  E-value=0.0023  Score=37.02  Aligned_cols=184  Identities=13%  Similarity=0.020  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             89875659987227999999999986420365101010101889999998234893579999999999986409884245
Q 000815          338 QIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQN  417 (1269)
Q Consensus       338 q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~ais~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~  417 (1269)
                      ...++|.++...++|+.|...|+-+..=+....--.-.|.+..-+|.++.-++ ...++..+++.|+..|...+.  ...
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~-~~~~A~~~~~~a~~~~~~~~~--~~~  115 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG-NSVNAVDSLENAIQIFTHRGQ--FRR  115 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTC--HHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHCCC--CHH
T ss_conf             99999999998869999999999999999875998899999999999999808-858889999976677653253--205


Q ss_pred             HHHHHHHHHHHHH-HCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             8999999999998-327569999999988086731568989999975410799988216888999999887279942899
Q 000815          418 ATRCGLWWVEMLK-ARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAI  496 (1269)
Q Consensus       418 A~R~~ll~~e~l~-~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~Al  496 (1269)
                      +.++..-.++++. ..+.+.+|...+-++..               .+...  +...-++--+...|.-|.+.|+..-|+
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~---------------l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~  178 (290)
T d1qqea_         116 GANFKFELGEILENDLHDYAKAIDCYELAGE---------------WYAQD--QSVALSNKCFIKCADLKALDGQYIEAS  178 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---------------HHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHC--CCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             8999999888676478789999889999999---------------98733--760333468899999999817399999


Q ss_pred             HHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             9999999861599941-14878999999999991899999999999
Q 000815          497 RTYRSAVSVYKGSTWS-HIKDHVHFHIGQWYAVLGMHDIAVAHMLE  541 (1269)
Q Consensus       497 rCy~~a~~vY~~~~W~-~i~dhi~~~Lgrqa~~Lg~~~~Av~hll~  541 (1269)
                      .+|..+.......+.. .....+++.+|.+....|+...|.+.+.+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~  224 (290)
T d1qqea_         179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE  224 (290)
T ss_dssp             HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             9999999868133245556999999999999984659999999999

PyMOL of d1qqea_

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}	Back information, alignment and structure

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}	Back information, alignment and structure

>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}	Back information, alignment and structure

>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}	Back information, alignment and structure

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure