Citrus Sinensis ID: 000819

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------127
MKLSRRKIKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEERPSVSSL
cccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccEEEEEEEEcccccEEEEEEEEEccHHHHHHHHcccccccccccccHHcccccccccHHHHHHHHccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEEccccccccccccccccccccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHcHHHccccHHHHHHHHHHHHHHHHHcccccccccccEEEccccccHHHHHHHHHHcccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHccccccccEEEEEccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHEEEEEEccccEEEEHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHcccccccccHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHccccccccccccccccccccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHEEEcccccHHHHHHHHHHHccEEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHEEccccccHHHHHHHHHHHHHcccccccccccEEEEccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccEEEEEEEEccccccEEEEEEEEEEcHHHHHHHHHHHcccEcccccccHHHHcccccccHHHHHHHHccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccEEEEEEccccEEEcccccHHHHHHHHHHHHccccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEHHHccccccccccEEHHHHHHHccccHccccccHHHHHHHHHcccccccccccccccccccEEEEEcccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcHHcHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHEHEHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHccHHHHHHHHHHHHccccccccccEEccccccHHHHHHHHHHHHHcccccEEEEEEccccccccccccEEEccccccccHHHHHHHHHHccccccEEccccHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccEEEcccHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccccccc
MKLSRRKIKFLQSISLFQVLFILCVVraerpdarllatSNSVAGEVKHVEEFCAMYdicgarsdrkvlncpynipsvkpddllsskvqslcptitgnvcctedqFDTLRTQVQQAIPFLVGCPACLRNFLNLFCeltcspnqslfiNVTSVskvsnnltvdgidyyitdtfgqglyesckdvkfgtmntraldfigggaqnFKDWFAFIGRraaanlpgspytikfwpsapelsgmipmnvsayscadgslgcscgdctsspvcsstappphkssscsvkmgslnakCVDFALAILYIILVSLFFgwgffhrkrersrsfrmkplvnamdgselhsverqkeenlpmqvqmlgtprtrnRIQLSIVQGYMSNFYRKYgkwvarnpTLVLSLSMALVLLLCLGLIRfevetrpeklwvgpgsraaeeklffdshlapfyrIEELILatipdtthgnlpsivTESNIKLLFEIQKKIDGlranysgsmisltdicmkplgqdcatQSVLQYFkmdpknfddfggveHVKYCFQHYtstescmsafkgpldpstalggfsgnnysEASAFVVTypvnnavdregnETKKAVAWEKAFVQLAKDEllpmvqsknltlafssESSIEEELKRESTADAITIVISYLVMFAYISltlgdtphlssfyISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQqlelpletRISNALVEVGPSITLASLSEVLAFAVgsfipmpacRVFSMFAALAVLLDFLLQITAFVALIVFDFLRaedkrvdcipclklsssyadsdkgigqrkPGLLARYMKALCTRIepgleqkivlprdsylQGYFNNisehlrigpplyFVVKNynyssesrqtnqlcsisqcdsNSLLNEIsraslipqssyiakpaaswLDDFLvwispeafgccrkftngsycppddqppccpsgqsscgsagvckdcttcfhhsdllkdrpstiqfkeklpwflnalpsascakgghgaytnsvdlkgyengivqassfrtyhtplnrqiDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIThafsvssgdkNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPvvlsvfgppsrcmlverqeerpsvssl
mklsrrkikflqsislFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHsverqkeenlpmqvqmlgtprtrnriQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLklsssyadsdkgigqRKPGLLARYMKALCTRIEpgleqkivlprDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHafsvssgdkNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRcmlverqeerpsvssl
MKLSRRKIKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTlvlslsmalvlllclglIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYIsskvllglsgvvlvmlsvlgsvgFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMfaalavlldfllQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYcppddqppccpsgqsscgsAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYlalvllgflhglvflpvvlSVFGPPSRCMLVERQEERPSVSSL
*******IKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCT*********************MGSLNAKCVDFALAILYIILVSLFFGWGFFHR*********************************************RNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTL*****************ADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSS*****NQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCP**************CGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS**********ALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCML*************
*******IKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPV*************CSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRM***********************************RNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ*L**PL*TRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLS**********GQRKPGLLARYMKALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP*******************
MKLSRRKIKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCT*******************VKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFS***********ESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYS*********CSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQP*************GVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVE***********
MKLSRRKIKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSR*****************************************RIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS*****************
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iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
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MKLSRRKIKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEERPSVSSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1268 2.2.26 [Sep-21-2011]
P569411277 Niemann-Pick C1 protein O yes no 0.912 0.906 0.360 0.0
O356041277 Niemann-Pick C1 protein O yes no 0.892 0.886 0.347 0.0
O151181278 Niemann-Pick C1 protein O yes no 0.896 0.889 0.357 0.0
Q6T3U31331 Niemann-Pick C1-like prot no no 0.911 0.868 0.340 1e-168
Q9UHC91359 Niemann-Pick C1-like prot no no 0.910 0.849 0.334 1e-163
Q6T3U41333 Niemann-Pick C1-like prot no no 0.916 0.871 0.331 1e-159
Q122001170 Niemann-Pick type C-relat yes no 0.856 0.928 0.308 1e-149
Q191271383 Niemann-Pick C1 protein h yes no 0.909 0.833 0.246 1e-103
P343891274 Niemann-Pick C1 protein h no no 0.847 0.843 0.257 1e-92
Q61115 1434 Protein patched homolog 1 no no 0.175 0.154 0.344 6e-29
>sp|P56941|NPC1_PIG Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1 Back     alignment and function desciption
 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/1282 (36%), Positives = 697/1282 (54%), Gaps = 125/1282 (9%)

Query: 46   VKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT-GNV--CCTE 102
            V+   + C  Y  CG  S  K  NC Y+ P     +     VQ LCP    GNV  CC  
Sbjct: 18   VQVFSQSCVWYGECGIASGDKRYNCRYSGPPKPLPEDGYDLVQELCPGFFFGNVSLCCDV 77

Query: 103  DQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTS----VSKVSNNL 158
             Q  TL+  +Q  + FL  CP+C  N +NLFCELTCSP QS F+NVT+    V  V+N  
Sbjct: 78   QQLRTLKDNLQLPLQFLSRCPSCFYNLMNLFCELTCSPRQSQFLNVTATEDYVDPVTNQT 137

Query: 159  --TVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGG---GAQNFKDWFAFIGRRA 213
               V  ++YY+ +TF   +Y +C+DV+  + N +AL  + G    A N  +W  ++  + 
Sbjct: 138  KTNVKELEYYVGETFANAMYNACRDVEAPSSNEKALGLLCGREAQACNATNWIEYMFNKD 197

Query: 214  AANLPGSPYTIKFWPSAPELSGMIPMNVSAYSC---ADGSLG-CSCGDCTSSPVCSSTAP 269
                  +P+TI    S     GM PMN +   C    D   G CSC DC  S VC     
Sbjct: 198  NGQ---APFTITPIFSDLPTHGMEPMNNATKGCDESVDEVTGPCSCQDC--SIVCGPKPQ 252

Query: 270  PPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAM 329
            PP       +    L    +   +   Y+  + +FFG  FF     R R F  +     +
Sbjct: 253  PPPPPVPWRI----LGLDAMYVIMWSSYMAFLIVFFG-AFFAVWCYRKRYFVSE--YTPI 305

Query: 330  DGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVL 389
            DG+   SV    ++        LG    R           +   + ++G +  R+P  V+
Sbjct: 306  DGNIAFSVN-SSDKGQAFCCDPLGAAFERG----------LRRLFAQWGAFCVRHPGCVV 354

Query: 390  SLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIP 449
              S+A ++    GL+   V T P  LW  PGS+A  EK +FD+H  PF+R+E+LI+    
Sbjct: 355  FFSLAFIVACSSGLVFIRVTTDPVDLWSAPGSQARREKEYFDTHFGPFFRMEQLIIRATN 414

Query: 450  DTTHGNLP----------SIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPL-- 497
            + +H   P            ++   +  + ++Q  I+ + A+Y+   ++L DIC+ PL  
Sbjct: 415  NQSHIYHPYPAGADVPFGPPLSRDILHQVLDLQTAIENITASYNNETVTLQDICLAPLSP 474

Query: 498  -GQDCATQSVLQYFKMDPKNFD----DFGGV-----EHVKYCFQHYTS-------TESCM 540
              ++C   SVL YF+      D    DF  V      H  YC +   S        + C+
Sbjct: 475  YNKNCTILSVLNYFQNSHSVLDHQVGDFFFVYADYHTHFLYCVRAPASLNDASLLHDPCL 534

Query: 541  SAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKD 600
              F GP+ P   LGG+   NY+ A+A V+T+PVNN  + +  + ++A AWE  F+   K+
Sbjct: 535  GTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYN-DTEKLQRAQAWESEFINFVKN 593

Query: 601  ELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSF 660
                  ++ NLT++F +E SIE+EL RES +D  TI+ISY +MF YIS+ LG     S  
Sbjct: 594  -----YKNPNLTISFMAERSIEDELNRESNSDLFTILISYAIMFLYISIALGHIKSCSRL 648

Query: 661  YISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHA 720
             + SK+ LG++G+++V+ SV  S+G FS IGV  TLI++EVIPFLVLAVGVDN+ ILV  
Sbjct: 649  LVDSKISLGIAGILIVLSSVACSLGIFSYIGVPLTLIVIEVIPFLVLAVGVDNIFILVQT 708

Query: 721  VKR-QQLE-LPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAV 778
             +R ++L+   L+ ++   L EV PS+ L+S SE +AF +G    +PA   FS+FA +AV
Sbjct: 709  YQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGGLSVVPAVHTFSLFAGMAV 768

Query: 779  LLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKG--------IGQRKPG 830
            L+DFLLQIT FV+L+  D  R E  R+D + C++ +   A                  P 
Sbjct: 769  LIDFLLQITCFVSLLGLDIKRQEKNRLDVVCCVQGAEDGAGVQASESCLFRFFKNSYAPL 828

Query: 831  LLARYMK---------------ALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPP 875
            LL  +M+               A+  ++E GL+Q + +P DSY+  YF ++S +L  GPP
Sbjct: 829  LLKDWMRPIVIAVFVGVLSFSIAVLNKVEIGLDQSLSMPDDSYVMDYFQSLSRYLHAGPP 888

Query: 876  LYFVV-KNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFL 934
            +YFVV + +NY+S   Q N +C    C+++SL+ +I  A+ +   + I    +SW+DD+ 
Sbjct: 889  VYFVVEEGHNYTSLKGQ-NMVCGGLGCNNDSLVQQIFTAAQLDNYTRIGFAPSSWIDDYF 947

Query: 935  VWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPS 994
             WI P++  CCR +                S    C ++ V   C  C   +   K RP 
Sbjct: 948  DWIKPQS-SCCRVYN---------------STDQFCNASVVDPTCIRCRPLTSEGKQRPQ 991

Query: 995  TIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDY 1054
               F   LP FL+  P+  C KGGH AY+++V++ G  +G V A+ F TYHT L    D+
Sbjct: 992  GEDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILGNGSG-VGATYFMTYHTVLQASADF 1050

Query: 1055 VNSMRAAREFSSRVSDSLQME-----IFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFV 1109
            +++M+ AR  +S ++ ++ +E     +FPYSVFY+++EQYL +    + NL +++GA+F+
Sbjct: 1051 IDAMQKARLIASNITRTMGLEASSYRVFPYSVFYVFYEQYLTVIDDTIFNLGVSLGAIFL 1110

Query: 1110 VCLI-TTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHI 1168
            V ++   C  W++ I+ + + MI+V++ GVM +  I LNAVS+VNLVM+ GI+VEFC HI
Sbjct: 1111 VTVVLMGCELWATVIMCVTIAMILVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHI 1170

Query: 1169 THAFSVSS-GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLA 1227
            T AF++S+ G +  R +EAL  MG+SVFSGITLTK  G++VL F+++++F ++YF+MYLA
Sbjct: 1171 TRAFTLSTKGSRVDRAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLA 1230

Query: 1228 LVLLGFLHGLVFLPVVLSVFGP 1249
            +VLLG  HGL+FLPV+LS  GP
Sbjct: 1231 IVLLGATHGLIFLPVLLSYIGP 1252
Involved in the intracellular trafficking of cholesterol. May play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural and functional integrity of nerve terminals.
Sus scrofa (taxid: 9823)
>sp|O35604|NPC1_MOUSE Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2 Back     alignment and function description
>sp|O15118|NPC1_HUMAN Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2 Back     alignment and function description
>sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1 SV=1 Back     alignment and function description
>sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2 Back     alignment and function description
>sp|Q6T3U4|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1 Back     alignment and function description
>sp|Q12200|NPC1_YEAST Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NCR1 PE=1 SV=1 Back     alignment and function description
>sp|Q19127|NPC1_CAEEL Niemann-Pick C1 protein homolog 1 OS=Caenorhabditis elegans GN=ncr-1 PE=1 SV=2 Back     alignment and function description
>sp|P34389|NPC2_CAEEL Niemann-Pick C1 protein homolog 2 OS=Caenorhabditis elegans GN=ncr-2 PE=3 SV=2 Back     alignment and function description
>sp|Q61115|PTC1_MOUSE Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1268
3594919081309 PREDICTED: niemann-Pick C1 protein-like 0.961 0.931 0.824 0.0
2977455531242 unnamed protein product [Vitis vinifera] 0.955 0.975 0.826 0.0
2240860461274 cholesterol transport protein [Populus t 0.964 0.959 0.790 0.0
2555392301235 hedgehog receptor, putative [Ricinus com 0.948 0.974 0.817 0.0
4494556031244 PREDICTED: niemann-Pick C1 protein-like 0.955 0.973 0.783 0.0
297744484 2090 unnamed protein product [Vitis vinifera] 0.981 0.595 0.748 0.0
3565095901257 PREDICTED: niemann-Pick C1 protein-like 0.963 0.972 0.763 0.0
3565179331283 PREDICTED: niemann-Pick C1 protein-like 0.959 0.948 0.768 0.0
4494852641296 PREDICTED: niemann-Pick C1 protein-like 0.984 0.962 0.748 0.0
3594749671234 PREDICTED: niemann-Pick C1 protein [Viti 0.946 0.972 0.762 0.0
>gi|359491908|ref|XP_002272383.2| PREDICTED: niemann-Pick C1 protein-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 2133 bits (5527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1031/1250 (82%), Positives = 1136/1250 (90%), Gaps = 31/1250 (2%)

Query: 47   KHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFD 106
            +H EE+CAMYDICG RSD KVLNCPY  PSVKPDDLLSSK+QS+CPTI+GNVCCTE QFD
Sbjct: 60   RHSEEYCAMYDICGKRSDGKVLNCPYGSPSVKPDDLLSSKIQSMCPTISGNVCCTEAQFD 119

Query: 107  TLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYY 166
            TLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKV+NNLTVDGI++ 
Sbjct: 120  TLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVNNNLTVDGIEFI 179

Query: 167  ITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKF 226
            ITD FG+GLY SCKDVKFGTMNTRA+DFIG GA+ FK+WFAFIG RAA ++PGSPY I F
Sbjct: 180  ITDAFGEGLYNSCKDVKFGTMNTRAIDFIGAGAKTFKEWFAFIGTRAAPSVPGSPYAINF 239

Query: 227  WPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPP-HKSSSCSVKMGSLN 285
             PS  E SGM PMNVS YSC D SLGCSCGDC S+ VCS  APP  HK  SCSV++GSL 
Sbjct: 240  QPSIAESSGMKPMNVSTYSCGDNSLGCSCGDCPSASVCSGYAPPSLHKEGSCSVRIGSLK 299

Query: 286  AKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENL 345
            AKC++F+LAILYIILV++FFGWG FHR RER+ + RMKP++N MDGSELHS+ R K+ENL
Sbjct: 300  AKCIEFSLAILYIILVTIFFGWGLFHRTRERNPAPRMKPMLNVMDGSELHSMNRPKDENL 359

Query: 346  PMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIR 405
              Q+ +   P+ RN +QLSIVQGYMSNFYR+YG WVAR+PT++L  S+A+VL+LCLGLIR
Sbjct: 360  SSQM-LEDVPQIRNGVQLSIVQGYMSNFYRRYGTWVARHPTIMLCSSLAIVLVLCLGLIR 418

Query: 406  FEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNI 465
            F+VETRPEKLWVGPGS+AAEEK FFDSHLAPFYRIE+L+LATIPD  +G  PSIVTE+NI
Sbjct: 419  FKVETRPEKLWVGPGSKAAEEKQFFDSHLAPFYRIEQLVLATIPDA-NGISPSIVTENNI 477

Query: 466  KLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEH 525
            KLLFEIQKK+DGLRAN+SGSMISLTDICMKPLGQDCATQSVLQYFKMD +N+DD+GGV+H
Sbjct: 478  KLLFEIQKKVDGLRANFSGSMISLTDICMKPLGQDCATQSVLQYFKMDSRNYDDYGGVQH 537

Query: 526  VKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETK 585
            V+YCFQHYTS ++CMSAFK PLDPSTALGGFSGNNYSEASAF+VTYPVNNA+D+EGNET 
Sbjct: 538  VEYCFQHYTSADTCMSAFKAPLDPSTALGGFSGNNYSEASAFIVTYPVNNAIDKEGNETG 597

Query: 586  KAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFA 645
            KAVAWEKAF+Q+ KD+LLPM+QSKNLTL+FSSESSIEEELKRESTADAITI ISYLVMFA
Sbjct: 598  KAVAWEKAFIQIVKDDLLPMMQSKNLTLSFSSESSIEEELKRESTADAITISISYLVMFA 657

Query: 646  YISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFL 705
            YISLTLGDTP LSSFYISSK+ LGL+GV+LVMLSVLGSVGFFSAIGVKSTLIIMEVIPFL
Sbjct: 658  YISLTLGDTPRLSSFYISSKIFLGLAGVMLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFL 717

Query: 706  VLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 765
            VLAVGVDNMCILVHAVKRQ LELPLE RISNALVEVGPSITLASL+EVLAFAVG+FIPMP
Sbjct: 718  VLAVGVDNMCILVHAVKRQPLELPLEGRISNALVEVGPSITLASLAEVLAFAVGTFIPMP 777

Query: 766  ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIG 825
            ACRVFSMFAALAVLLDFLLQ+TAFVALIVFDFLRAED+R+DC PC+K+SSSYADSDKGIG
Sbjct: 778  ACRVFSMFAALAVLLDFLLQVTAFVALIVFDFLRAEDRRIDCFPCIKISSSYADSDKGIG 837

Query: 826  QRKPGLLARYMK----------------------------ALCTRIEPGLEQKIVLPRDS 857
            QRKPGLLARYMK                            ALCTRIEPGLEQKIVLPRDS
Sbjct: 838  QRKPGLLARYMKEVHAPILSLWGVKLVVISVFVAFALASIALCTRIEPGLEQKIVLPRDS 897

Query: 858  YLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIP 917
            YLQGYFNN+SE+LRIGPPLYFVVKNYNYSSESR TNQLCSISQC+S+SLLNEI+RASLIP
Sbjct: 898  YLQGYFNNVSEYLRIGPPLYFVVKNYNYSSESRHTNQLCSISQCNSDSLLNEIARASLIP 957

Query: 918  QSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCK 977
            +SSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPP+DQPPCC S   SC   G+CK
Sbjct: 958  ESSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPNDQPPCCASEDGSCYLNGLCK 1017

Query: 978  DCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQ 1037
            DCTTCF HSDL  DRPST QF+EKLPWFL ALPSA C+KGGHGAYT+SV+LKG+E+GI+Q
Sbjct: 1018 DCTTCFRHSDLYNDRPSTAQFREKLPWFLAALPSADCSKGGHGAYTSSVELKGFESGIIQ 1077

Query: 1038 ASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTAL 1097
            ASSFRTYHTPLN+QIDYVNSMRAAREF+SRVSDSL+++IFPYSVFYM+FEQYLDIWRTAL
Sbjct: 1078 ASSFRTYHTPLNKQIDYVNSMRAAREFTSRVSDSLKIQIFPYSVFYMFFEQYLDIWRTAL 1137

Query: 1098 INLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMA 1157
            INLAIAIGAVF+VCL+ TCS WSSAIILLVL MIVVDLMGVMAIL IQLNA+SVVNLVMA
Sbjct: 1138 INLAIAIGAVFIVCLVITCSLWSSAIILLVLAMIVVDLMGVMAILNIQLNALSVVNLVMA 1197

Query: 1158 VGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVF 1217
            VGIAVEFCVHITHAFSVSSGD+NQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVF
Sbjct: 1198 VGIAVEFCVHITHAFSVSSGDRNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVF 1257

Query: 1218 VVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEERPSVSS 1267
            VVYYFQMYLALVLLGFLHGLVFLPVVLS+ GPPSRC+L++++E++PS SS
Sbjct: 1258 VVYYFQMYLALVLLGFLHGLVFLPVVLSMCGPPSRCVLIDKREDQPSPSS 1307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297745553|emb|CBI40718.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224086046|ref|XP_002307793.1| cholesterol transport protein [Populus trichocarpa] gi|222857242|gb|EEE94789.1| cholesterol transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255539230|ref|XP_002510680.1| hedgehog receptor, putative [Ricinus communis] gi|223551381|gb|EEF52867.1| hedgehog receptor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449455603|ref|XP_004145542.1| PREDICTED: niemann-Pick C1 protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356509590|ref|XP_003523530.1| PREDICTED: niemann-Pick C1 protein-like [Glycine max] Back     alignment and taxonomy information
>gi|356517933|ref|XP_003527640.1| PREDICTED: niemann-Pick C1 protein-like [Glycine max] Back     alignment and taxonomy information
>gi|449485264|ref|XP_004157117.1| PREDICTED: niemann-Pick C1 protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359474967|ref|XP_002279611.2| PREDICTED: niemann-Pick C1 protein [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1268
TAIR|locus:20358781272 AT1G42470 [Arabidopsis thalian 0.621 0.619 0.704 0.0
UNIPROTKB|G4NE971275 MGG_00819 "Niemann-Pick C1 pro 0.591 0.588 0.341 5.5e-180
ZFIN|ZDB-GENE-030131-31611276 npc1 "Niemann-Pick disease, ty 0.587 0.583 0.331 1.4e-172
UNIPROTKB|G3V7K51278 Cdig2 "RCG41239" [Rattus norve 0.522 0.518 0.368 2.8e-172
MGI|MGI:10977121277 Npc1 "Niemann Pick type C1" [M 0.522 0.519 0.368 2.8e-170
UNIPROTKB|Q9JLG31277 NPC1 "Niemann-Pick type C1 pro 0.533 0.530 0.358 9.4e-170
ASPGD|ASPL00000510851271 AN2119 [Emericella nidulans (t 0.623 0.622 0.317 5.2e-167
UNIPROTKB|P569411277 NPC1 "Niemann-Pick C1 protein" 0.596 0.592 0.313 4.3e-148
UNIPROTKB|F1NQT41278 NPC1 "Uncharacterized protein" 0.592 0.587 0.309 9.6e-148
UNIPROTKB|F1SBB51277 NPC1 "Niemann-Pick C1 protein" 0.596 0.592 0.312 5.3e-147
TAIR|locus:2035878 AT1G42470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2894 (1023.8 bits), Expect = 0., Sum P(2) = 0.
 Identities = 561/796 (70%), Positives = 640/796 (80%)

Query:    45 EVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQ 104
             E K    +CAMYDICGARSD KVLNCP+NIPSVKPDDLLSSK+QSLCPTITGNVCCTE Q
Sbjct:    11 EAKQSAGYCAMYDICGARSDGKVLNCPFNIPSVKPDDLLSSKIQSLCPTITGNVCCTETQ 70

Query:   105 FDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGID 164
             FDTLR+QVQQAIPF+VGCPACLRNFLNLFCELTCSP+QSLFINVTS +KV NN TVDGI 
Sbjct:    71 FDTLRSQVQQAIPFIVGCPACLRNFLNLFCELTCSPDQSLFINVTSTTKVKNNSTVDGIQ 130

Query:   165 YYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTI 224
             YYITD FG G+YESCK+VKFG+ N+RALDF+G GA+NFK+WF FIG++A  NLPGSPY I
Sbjct:   131 YYITDDFGAGMYESCKNVKFGSSNSRALDFLGAGAKNFKEWFTFIGQKAGVNLPGSPYGI 190

Query:   225 KFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAP-PPHKSSSCSVKMGS 283
              F P+ P  SGM PMNVS YSC D SLGCSCGDC S+  CSS A  P  K  SCS+K+GS
Sbjct:   191 AFLPTPPVSSGMRPMNVSIYSCGDESLGCSCGDCPSAATCSSKAEVPTQKKHSCSIKIGS 250

Query:   284 LNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEE 343
             L  KCVDF LAILYI+LVSLF G G  H  R + ++ +M  L  A    E +SV +QK +
Sbjct:   251 LEVKCVDFILAILYIVLVSLFLGGGLLHPVRGKKKTSQMGTLSEA--SGERNSVNQQKPD 308

Query:   344 NLPMQVQML-GTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTXXXXXXXXXXXXXXXX 402
              +  Q QML  TP+ RN  QLS VQG+++NFY KYG WVAR+PT                
Sbjct:   309 TI--QSQMLQNTPQ-RNWGQLSTVQGHLANFYGKYGIWVARHPTLVLCLSVSVVLLLCVG 365

Query:   403 XIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTE 462
              IRF+VETRP+KLWVG GSRAAEEK FFD+HLAPFYRIE+LI+AT+  ++H   P I+T+
Sbjct:   366 LIRFKVETRPDKLWVGSGSRAAEEKQFFDTHLAPFYRIEQLIIATVQTSSHEKAPEILTD 425

Query:   463 SNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQ-YFKMDPKNFDDFG 521
              NIKLLF+IQKK+DGLRAN+SGSM+SLTDICMKPLG+DCATQSVLQ YFKM P+N+DD+G
Sbjct:   426 DNIKLLFDIQKKVDGLRANHSGSMVSLTDICMKPLGEDCATQSVLQQYFKMKPENYDDYG 485

Query:   522 GVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREG 581
             GV+HVKYCF+H+TSTESC+SAFKGPLDP+TALGGFSGN++SEASAF+VTYPV+N VD +G
Sbjct:   486 GVDHVKYCFEHFTSTESCLSAFKGPLDPTTALGGFSGNSFSEASAFLVTYPVDNFVDNKG 545

Query:   582 NETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYL 641
             N+T+KAVAWEKAF+QLAKDELLPMVQ+KNLTL+FSSESSIEEELKRESTAD ITI ISYL
Sbjct:   546 NKTEKAVAWEKAFIQLAKDELLPMVQAKNLTLSFSSESSIEEELKRESTADVITIAISYL 605

Query:   642 VMFAYISLTLGDTPHLSSFYIXXXXXXXXXXXXXXXXXXXXXXXFFSAIGVKSTLIIMEV 701
             VMFAYISLTLGD+P L SFYI                       FFSA+G+KSTLIIMEV
Sbjct:   606 VMFAYISLTLGDSPRLKSFYITSKVLLGLSGVLLVMLSVLGSVGFFSAVGMKSTLIIMEV 665

Query:   702 IPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSF 761
             IPFLVLAVGVDNMCILVHAVKRQ+ ELPLE RISNAL+EVGPSITLASL+E+LAFAVG+F
Sbjct:   666 IPFLVLAVGVDNMCILVHAVKRQEQELPLERRISNALMEVGPSITLASLAEILAFAVGAF 725

Query:   762 IPMPACRVFSMXXXXXXXXXXXXQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSD 821
             I MPA RVFSM            QITAFVALIVFDF R EDKRVDC PC+K S S   ++
Sbjct:   726 IKMPAVRVFSMFAALAVLLDFLLQITAFVALIVFDFRRTEDKRVDCFPCIKTSKSSISAE 785

Query:   822 KGIGQRKPGLLARYMK 837
             KG+GQRK GLL RYMK
Sbjct:   786 KGVGQRKAGLLTRYMK 801
GO:0008158 "hedgehog receptor activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
UNIPROTKB|G4NE97 MGG_00819 "Niemann-Pick C1 protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3161 npc1 "Niemann-Pick disease, type C1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G3V7K5 Cdig2 "RCG41239" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1097712 Npc1 "Niemann Pick type C1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9JLG3 NPC1 "Niemann-Pick type C1 protein" [Cricetulus griseus (taxid:10029)] Back     alignment and assigned GO terms
ASPGD|ASPL0000051085 AN2119 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|P56941 NPC1 "Niemann-Pick C1 protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQT4 NPC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SBB5 NPC1 "Niemann-Pick C1 protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q12200NPC1_YEASTNo assigned EC number0.30800.85640.9282yesno
O15118NPC1_HUMANNo assigned EC number0.35760.89660.8896yesno
O35604NPC1_MOUSENo assigned EC number0.34720.89270.8864yesno
P56941NPC1_PIGNo assigned EC number0.36030.91240.9060yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1268
TIGR009171204 TIGR00917, 2A060601, Niemann-Pick C type protein f 0.0
pfam12349153 pfam12349, Sterol-sensing, Sterol-sensing domain o 4e-59
pfam02460801 pfam02460, Patched, Patched family 2e-42
TIGR009181145 TIGR00918, 2A060602, The Eukaryotic (Putative) Ste 4e-35
TIGR00918 1145 TIGR00918, 2A060602, The Eukaryotic (Putative) Ste 4e-33
pfam02460801 pfam02460, Patched, Patched family 4e-24
COG1033727 COG1033, COG1033, Predicted exporters of the RND s 3e-10
COG1033 727 COG1033, COG1033, Predicted exporters of the RND s 3e-07
COG1033727 COG1033, COG1033, Predicted exporters of the RND s 2e-06
TIGR00921719 TIGR00921, 2A067, The (Largely Archaeal Putative) 6e-06
TIGR00921 719 TIGR00921, 2A067, The (Largely Archaeal Putative) 1e-05
TIGR03480 862 TIGR03480, HpnN, hopanoid biosynthesis associated 3e-05
COG1033727 COG1033, COG1033, Predicted exporters of the RND s 7e-05
pfam03176332 pfam03176, MMPL, MMPL family 1e-04
TIGR00833 910 TIGR00833, actII, Transport protein 2e-04
pfam12349153 pfam12349, Sterol-sensing, Sterol-sensing domain o 0.001
TIGR00920 889 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-co 0.001
>gnl|CDD|233184 TIGR00917, 2A060601, Niemann-Pick C type protein family Back     alignment and domain information 
 Score = 1437 bits (3721), Expect = 0.0
 Identities = 695/1251 (55%), Positives = 867/1251 (69%), Gaps = 102/1251 (8%)

Query: 53   CAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLC----PTITGNVCCTEDQFDTL 108
            C  Y ICGARSD KVLNCPYN PS KP D  SS +QSLC    P I+GNVCCTE QFDTL
Sbjct: 1    CVWYGICGARSDGKVLNCPYNGPSKKPPDDGSSLIQSLCGFSHPNISGNVCCTETQFDTL 60

Query: 109  RTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYIT 168
            R+ VQ AIPFLV CPACLRN LNLFCELTCSP+QSLF+NVTS +KV  N TVD + YYIT
Sbjct: 61   RSNVQLAIPFLVRCPACLRNLLNLFCELTCSPDQSLFMNVTSTTKVKTNSTVDSVQYYIT 120

Query: 169  DTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWP 228
            D F  G+Y SC +VKF + N+RALDF+ GGA NF +W  +IG+ A  N PG+P+ I F P
Sbjct: 121  DDFANGMYNSCSNVKFPSSNSRALDFLCGGAANFCNWTNWIGQMAGVNNPGAPFGITFLP 180

Query: 229  S-APELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTA-PPPHKSSSCSVKMGSLNA 286
            +  P  SGM PMNVS YSC D  LGCSCG   S   CS  A PP     SCS+ +G    
Sbjct: 181  TPCPVSSGMRPMNVSTYSCGDAVLGCSCGCSCSDCDCSCKAKPPTPPKPSCSIILG---V 237

Query: 287  KCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLP 346
               D  +AILYI+LV +F G G     R + ++  M  L  A    E++S   Q ++N P
Sbjct: 238  DAYDVIMAILYIVLVLVFLGGGLLFPVRGKKKTSFMGTLSEA--SGEINSSNNQSDQNTP 295

Query: 347  MQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRF 406
                       RN  QL+ V+G+++ F+ KYG WVARNP LVL LS+++VLLL +GLI F
Sbjct: 296  ----------QRNEGQLATVEGHLARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFF 345

Query: 407  EVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIK 466
            EVET P KLWV PGSRAA EK FFD+H  PFYRIE+LI+A +  + H   P ++ + N+K
Sbjct: 346  EVETDPVKLWVAPGSRAALEKEFFDTHFGPFYRIEQLIIAAVQTSQHEKFPPVLDDDNLK 405

Query: 467  LLFEIQKKIDGLRANYSGSMISLTDICMKPLGQD-CATQSVLQYF-----KMDPKNFDDF 520
            LLF+IQKKI  L AN    +I+L DIC  PL    C   S   YF     K+DP+N+DD 
Sbjct: 406  LLFDIQKKISQLFAN----LITLDDICFAPLSPYNCFIYSTCGYFQNMYSKLDPENYDDG 461

Query: 521  GGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDRE 580
             GV++VKYCF+ +TS ESC+SAF GP+DP+TALGGFSGNN+SEASAFVVT+PVNN    +
Sbjct: 462  FGVDYVKYCFECFTSPESCLSAFGGPVDPTTALGGFSGNNFSEASAFVVTFPVNN-FVNK 520

Query: 581  GNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISY 640
             ++ +KAVAWEKAF+Q AK+ LLP VQ+K L ++FSSE SIE+ELKRESTAD ITI++SY
Sbjct: 521  TDKLEKAVAWEKAFIQFAKNYLLPNVQAK-LDISFSSERSIEDELKRESTADVITILVSY 579

Query: 641  LVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIME 700
            LVMFAYISL+LG +    S +I SKVLLG+SGV++V+ SV+GSVG FS IG+K+TLIIME
Sbjct: 580  LVMFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIME 639

Query: 701  VIPFLVLAVGVDNMCILVHAVKRQQ-----------LELPLETRISNALVEVGPSITLAS 749
            VIPFLVLAVGVDN+ ILV   +R +            EL LE ++  AL EVGPSITLAS
Sbjct: 640  VIPFLVLAVGVDNIFILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLAS 699

Query: 750  LSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIP 809
            LSE LAF +G+   MPA R FS+FA LAV +DFLLQITAFVAL+V DF R ED RVDC P
Sbjct: 700  LSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVALLVLDFKRTEDNRVDCFP 759

Query: 810  CLKLSSSYADSDKGIGQRKPGLLARYMK----------------------------ALCT 841
            C+K S S   ++KG GQRK GLL R+ K                            AL T
Sbjct: 760  CIKGSKSSISAEKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALAT 819

Query: 842  RIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVK-NYNYSSESRQTNQLCSISQ 900
            RI+ GL+Q++ LP+DSYLQ YF +++  L +GPP+YFV+K +YNY+    Q N++C+   
Sbjct: 820  RIDIGLDQQLALPQDSYLQIYFASLTPLLEVGPPVYFVLKGDYNYTDSESQ-NKVCTGGG 878

Query: 901  CDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCP-PDDQ 959
            C+ +S++N  +  +      YIAKPA+SWLDD+  W SP++  CCRKFTNG++C  PD  
Sbjct: 879  CNKDSIVNVFNNLT------YIAKPASSWLDDYFDWASPQSSCCCRKFTNGTFCNGPDPS 932

Query: 960  PPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGH 1019
                               C  C   S   + RPST QFKE LP+FLN  PSA CAKGGH
Sbjct: 933  -------------------CFRCADLSSNAQGRPSTTQFKEYLPFFLNDNPSADCAKGGH 973

Query: 1020 GAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPY 1079
             AY+++VDL+G+ N I+QAS F TYHTPLN Q D++N++RAARE S+ V+ SL+ME+FPY
Sbjct: 974  AAYSSAVDLQGHANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPY 1033

Query: 1080 SVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLI-TTCSFWSSAIILLVLTMIVVDLMGV 1138
            SVFY++FEQYL IW  ALINL I++GA+F+V L+    +  S+  +++ + MIVV+L+G+
Sbjct: 1034 SVFYVFFEQYLTIWSDALINLGISLGAIFIVTLVLLGLNALSAVNVVISVGMIVVNLVGI 1093

Query: 1139 MAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS-SGDKNQRMKEALGTMGASVFSG 1197
            M +  I LNAVSVVNLVMA GI++EFC HI   FS S    +N R KEALG MG+SVFSG
Sbjct: 1094 MHLWNISLNAVSVVNLVMAKGISIEFCSHINAQFSTSKHFSRNHRAKEALGGMGSSVFSG 1153

Query: 1198 ITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 1248
            ITLTKLVGV+VL FS++E+F VYYF+MYLA+VLLG LHGLVFLPV+LS  G
Sbjct: 1154 ITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALHGLVFLPVLLSYIG 1204

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis [Transport and binding proteins, Other]. Length = 1204
>gnl|CDD|192997 pfam12349, Sterol-sensing, Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>gnl|CDD|217050 pfam02460, Patched, Patched family Back     alignment and domain information
>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>gnl|CDD|217050 pfam02460, Patched, Patched family Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|233187 TIGR00921, 2A067, The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>gnl|CDD|233187 TIGR00921, 2A067, The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>gnl|CDD|234225 TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter like protein HpnN Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|217407 pfam03176, MMPL, MMPL family Back     alignment and domain information
>gnl|CDD|129913 TIGR00833, actII, Transport protein Back     alignment and domain information
>gnl|CDD|192997 pfam12349, Sterol-sensing, Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>gnl|CDD|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A reductase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1268
TIGR009171204 2A060601 Niemann-Pick C type protein family. The m 100.0
KOG19331201 consensus Cholesterol transport protein (Niemann-P 100.0
TIGR009181145 2A060602 The Eukaryotic (Putative) Sterol Transpor 100.0
PF02460798 Patched: Patched family; InterPro: IPR003392 The t 100.0
KOG1934868 consensus Predicted membrane protein (patched supe 100.0
KOG19351143 consensus Membrane protein Patched/PTCH [Signal tr 100.0
COG1033727 Predicted exporters of the RND superfamily [Genera 100.0
TIGR00921719 2A067 The (Largely Archaeal Putative) Hydrophobe/A 100.0
TIGR00833910 actII Transport protein. Characterized members of 100.0
TIGR03480862 HpnN hopanoid biosynthesis associated RND transpor 100.0
COG1033727 Predicted exporters of the RND superfamily [Genera 99.96
PF12349153 Sterol-sensing: Sterol-sensing domain of SREBP cle 99.95
TIGR00920 886 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A red 99.95
TIGR00921719 2A067 The (Largely Archaeal Putative) Hydrophobe/A 99.93
PRK105031040 multidrug efflux system subunit MdtB; Provisional 99.91
TIGR009151044 2A0602 The (Largely Gram-negative Bacterial) Hydro 99.91
PRK105551037 aminoglycoside/multidrug efflux system; Provisiona 99.91
PRK106141025 multidrug efflux system subunit MdtC; Provisional 99.91
TIGR009141051 2A0601 heavy metal efflux pump (cobalt-zinc-cadmiu 99.91
PRK13024755 bifunctional preprotein translocase subunit SecD/S 99.9
PRK095771032 multidrug efflux protein; Reviewed 99.9
PRK095791017 multidrug efflux protein; Reviewed 99.9
PRK151271049 multidrug efflux system protein AcrB; Provisional 99.9
COG2409937 Predicted drug exporters of the RND superfamily [G 99.88
TIGR00833910 actII Transport protein. Characterized members of 99.88
PF03176333 MMPL: MMPL family; InterPro: IPR004869 Proteins of 99.87
PRK14726855 bifunctional preprotein translocase subunit SecD/S 99.84
PF008731021 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR0010 99.84
PF03176333 MMPL: MMPL family; InterPro: IPR004869 Proteins of 99.83
COG08411009 AcrB Cation/multidrug efflux pump [Defense mechani 99.81
PRK13023758 bifunctional preprotein translocase subunit SecD/S 99.79
TIGR03480 862 HpnN hopanoid biosynthesis associated RND transpor 99.71
COG0841 1009 AcrB Cation/multidrug efflux pump [Defense mechani 99.71
PRK129111403 bifunctional preprotein translocase subunit SecD/S 99.69
PF02460798 Patched: Patched family; InterPro: IPR003392 The t 99.68
PRK09579 1017 multidrug efflux protein; Reviewed 99.66
PRK10614 1025 multidrug efflux system subunit MdtC; Provisional 99.65
PF00873 1021 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR0010 99.64
TIGR00915 1044 2A0602 The (Largely Gram-negative Bacterial) Hydro 99.62
PRK09577 1032 multidrug efflux protein; Reviewed 99.62
PRK15127 1049 multidrug efflux system protein AcrB; Provisional 99.62
PRK10555 1037 aminoglycoside/multidrug efflux system; Provisiona 99.62
PRK10503 1040 multidrug efflux system subunit MdtB; Provisional 99.61
COG4258788 Predicted exporter [General function prediction on 99.6
COG36961027 Putative silver efflux pump [Inorganic ion transpo 99.59
TIGR00916192 2A0604s01 protein-export membrane protein, SecD/Se 99.57
PRK13022289 secF preprotein translocase subunit SecF; Reviewed 99.54
TIGR00914 1051 2A0601 heavy metal efflux pump (cobalt-zinc-cadmiu 99.54
TIGR009181145 2A060602 The Eukaryotic (Putative) Sterol Transpor 99.49
TIGR00966246 3a0501s07 protein-export membrane protein SecF. Th 99.48
KOG1934868 consensus Predicted membrane protein (patched supe 99.48
TIGR01129397 secD protein-export membrane protein SecD. SecD fr 99.45
PRK13024 755 bifunctional preprotein translocase subunit SecD/S 99.44
PRK13022289 secF preprotein translocase subunit SecF; Reviewed 99.44
PRK05812498 secD preprotein translocase subunit SecD; Reviewed 99.44
PRK08578292 preprotein translocase subunit SecF; Reviewed 99.43
PRK14726 855 bifunctional preprotein translocase subunit SecD/S 99.4
TIGR00916192 2A0604s01 protein-export membrane protein, SecD/Se 99.37
PRK13023 758 bifunctional preprotein translocase subunit SecD/S 99.37
PRK12933604 secD preprotein translocase subunit SecD; Reviewed 99.29
COG3696 1027 Putative silver efflux pump [Inorganic ion transpo 99.28
TIGR009171204 2A060601 Niemann-Pick C type protein family. The m 99.27
PRK05812498 secD preprotein translocase subunit SecD; Reviewed 99.23
PRK12911 1403 bifunctional preprotein translocase subunit SecD/S 99.2
TIGR00966246 3a0501s07 protein-export membrane protein SecF. Th 99.18
TIGR01129397 secD protein-export membrane protein SecD. SecD fr 99.17
PRK13021297 secF preprotein translocase subunit SecF; Reviewed 99.16
PRK08578292 preprotein translocase subunit SecF; Reviewed 99.16
PF02355189 SecD_SecF: Protein export membrane protein; InterP 99.14
PRK08343417 secD preprotein translocase subunit SecD; Reviewed 99.12
PRK12933604 secD preprotein translocase subunit SecD; Reviewed 99.05
PF02355189 SecD_SecF: Protein export membrane protein; InterP 99.04
PRK13021297 secF preprotein translocase subunit SecF; Reviewed 99.0
KOG3664999 consensus Predicted patched transmembrane receptor 98.97
COG0341305 SecF Preprotein translocase subunit SecF [Intracel 98.76
COG2409 937 Predicted drug exporters of the RND superfamily [G 98.74
PF12349153 Sterol-sensing: Sterol-sensing domain of SREBP cle 98.73
COG0342506 SecD Preprotein translocase subunit SecD [Intracel 98.61
COG0341305 SecF Preprotein translocase subunit SecF [Intracel 98.58
PRK08343417 secD preprotein translocase subunit SecD; Reviewed 98.56
COG0342506 SecD Preprotein translocase subunit SecD [Intracel 98.44
COG4258788 Predicted exporter [General function prediction on 98.43
KOG1935 1143 consensus Membrane protein Patched/PTCH [Signal tr 98.4
TIGR00920 886 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A red 97.4
PF03024167 Folate_rec: Folate receptor family; InterPro: IPR0 95.39
KOG19331201 consensus Cholesterol transport protein (Niemann-P 90.67
>TIGR00917 2A060601 Niemann-Pick C type protein family Back     alignment and domain information 
Probab=100.00  E-value=2.8e-203  Score=1963.70  Aligned_cols=1140  Identities=58%  Similarity=0.968  Sum_probs=985.9

Q ss_pred             eeecccCCCCCCCCcccCCCCCCCCCCChhhHHHHHhhCCCCC----CCCCCCHHHHHHHHHHHHhhhhhccCChhHHhh
Q 000819           53 CAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT----GNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRN  128 (1268)
Q Consensus        53 C~~~g~C~~~~~~~~~~C~~~~~~~~~~~~~~~~l~~~Cp~~~----~~~CC~~~Q~~~l~~~~~~~~~~~~~CpaC~~N  128 (1268)
                      |+|||+||++++++++|||||++|++|+++.+++++++||+++    +++|||++|+++|++||++|+++++|||||++|
T Consensus         1 C~~yg~Cg~~s~~~~l~c~~~~~~~~~~~~~~~~l~~~C~~~~~~~~~~~CC~~~Q~~~l~~nl~~~~~~~~~CpaC~~N   80 (1204)
T TIGR00917         1 CVWYGICGARSDGKVLNCPYNGPSKKPPDDGSSLIQSLCGFSHPNISGNVCCTETQFDTLRSNVQLAIPFLVRCPACLRN   80 (1204)
T ss_pred             CCccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhCccccccCCCCCCCCHHHHHHHHHHHHHHHHHhCcChhHHHH
Confidence            9999999999999999999999999999999999999999854    479999999999999999999999999999999


Q ss_pred             HhhhccccccCCCCCcceEEEeecccCCCeeEEEEEEEEcchhchHHhhccccCccCCCChhHhhhcCCC---CCCHHHH
Q 000819          129 FLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGG---AQNFKDW  205 (1268)
Q Consensus       129 f~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~V~~~~~~v~~~~~~~~y~SCk~v~~~~~~~~am~~~gg~---a~~~~~~  205 (1268)
                      |+|+||+||||||||+||+||++++.+++..|+|+||||+++||+++|||||||++|++|++|||+||||   +|||++|
T Consensus        81 ~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~V~~i~~~i~~~~a~~~y~SCk~v~~~~~~~~Amd~~cG~~~~~c~~~~w  160 (1204)
T TIGR00917        81 LLNLFCELTCSPDQSLFMNVTSTTKVKTNSTVDSVQYYITDDFANGMYNSCSNVKFPSSNSRALDFLCGGAANFCNWTNW  160 (1204)
T ss_pred             HHHHhcCCCcCcCccCceeeEEeccCCCCceEEEEEEEECHHHHHHHHHHhhCcccCCCchHHHHhccCCCcCCCCHHHH
Confidence            9999999999999999999999976556667999999999999999999999999999999999999998   7999999


Q ss_pred             HHhhcccCCCCCCCCceeEEecCCCCC-CCCcccCCCCCcCCCCC----CCCccccCCCCCCCCCCCCCCCCCCCCceEe
Q 000819          206 FAFIGRRAAANLPGSPYTIKFWPSAPE-LSGMIPMNVSAYSCADG----SLGCSCGDCTSSPVCSSTAPPPHKSSSCSVK  280 (1268)
Q Consensus       206 l~flG~~~~~~~~~sPf~inf~~~~~~-~~~~~~~~~~~~~C~~~----~~~CsC~dC~~~~sC~~~~~~~~~~~~c~~~  280 (1268)
                      |+||||++   +++|||||||+++... ..+++|||..+++|||.    .++|||+||++  |||.+|++++++++|+++
T Consensus       161 ~~f~G~~~---~~~~Pf~i~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~csc~dc~~--~c~~~~~~~~~~~~~~~~  235 (1204)
T TIGR00917       161 IGQMAGVN---NPGAPFGITFLPTPCPVSSGMRPMNVSTYSCGDAVLGCSCGCSCSDCDC--SCKAKPPTPPKPSCSIIL  235 (1204)
T ss_pred             HHhcCCCC---CCCCCeeEEeccCCCccccCcccCCCCCccCCCccCCCCCCccCcCchh--hCCCCCCCCCCCCceEEE
Confidence            99999984   2589999999987532 34899999999999986    48999999999  999877777778888886


Q ss_pred             ecCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCcccchhhhccccCcchhhhccCCCccccc
Q 000819          281 MGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNR  360 (1268)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (1268)
                      .    ++|++|+++++|.+++++++.|++..+++++++..........++.. .+.  .+.++.  .+....+      .
T Consensus       236 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~--~~~~~~~------~  300 (1204)
T TIGR00917       236 G----VDAYDVIMAILYIVLVLVFLGGGLLFPVRGKKKTSFMGTLSEASGEI-NSS--NNQSDQ--NTPQRNE------G  300 (1204)
T ss_pred             c----CcchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccc-ccc--cccccc--ccccccc------c
Confidence            4    67999999999988777776665554433322211111100000000 000  000000  0101111      1


Q ss_pred             chhhhHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeccCCcccccCCCChHHHHHHhhhccCCCCCce
Q 000819          361 IQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRI  440 (1268)
Q Consensus       361 ~~~~~~~~~l~~~f~~~g~~var~P~~vl~~~llv~~~l~~Gl~~i~~etdp~~lw~~~~S~a~~e~~~fd~~Fgp~~r~  440 (1268)
                       ..++++++++++|++||.|++||||++|++++++++++++|+.++++|+||+++|+|+++++++|+++||++|||++|+
T Consensus       301 -~~~~~~~~l~~~F~~~G~~var~P~~vi~isllv~~~l~~Gl~~~~vetDpv~Lw~~~~s~ar~E~~~fd~~fgpf~r~  379 (1204)
T TIGR00917       301 -QLATVEGHLARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFFEVETDPVKLWVAPGSRAALEKEFFDTHFGPFYRI  379 (1204)
T ss_pred             -hhhHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhCcccCChhhhcCCCCcHHHHHHHHHHHhcCCccce
Confidence             1358999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeccCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcccccCccccccccccccCC-CCcccchhhhhhhcCCCCCCC
Q 000819          441 EELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLG-QDCATQSVLQYFKMDPKNFDD  519 (1268)
Q Consensus       441 eqiii~~~~~~~~~~g~~vl~~e~L~~~~~lq~~I~~i~~~~~~~~~sl~DiC~kp~~-~~C~v~S~~~yf~~~~~~~~~  519 (1268)
                      ||+||++.+.+.....+++++++.|++++++|++|++++.    ++++++|+|+||.+ ..|.++|+++|||++.+.+++
T Consensus       380 eqvii~~~~~~g~~~~g~Vl~~e~L~~v~~L~~~I~~l~~----~~~tl~diC~kp~~~~~C~v~S~~~yfq~~~~~l~~  455 (1204)
T TIGR00917       380 EQLIIAAVQTSQHEKFPPVLDDDNLKLLFDIQKKISQLFA----NLITLDDICFAPLSPYNCFIYSTCGYFQNMYSKLDP  455 (1204)
T ss_pred             EEEEEEecCCCccccCCccCCHHHHHHHHHHHHHHHhhhc----cCCChhccccccCCCCCCccCCHHHHhccChhhcCc
Confidence            9999987521110112469999999999999999999852    36899999999985 689999999999987654432


Q ss_pred             C--------CCcccccccccccCCccccccccCCCCCCCcccCCcccCcccceeEEEEEEEeeccccccCcchHHHHHHH
Q 000819          520 F--------GGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWE  591 (1268)
Q Consensus       520 ~--------~~~~~l~~~~~~~~s~~~cl~~~g~Pl~~~~~lGg~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE  591 (1268)
                      .        +|.+++.+|.+.+   .+|++.||+|++|+.++||+.++++.+|+|+++||.++|+.++ ++..+.+.+||
T Consensus       456 ~~~~~~~~~~~~~~~~~c~~~p---~~c~~~fg~pl~p~~~lgG~~~~~~~~A~Al~lT~~l~n~~~~-~~~~~~a~~WE  531 (1204)
T TIGR00917       456 ENYDDGFGVDYVKYCFECFTSP---ESCLSAFGGPVDPTTALGGFSGNNFSEASAFVVTFPVNNFVNK-TDKLEKAVAWE  531 (1204)
T ss_pred             ccccccccccHHHhhhccccCc---chhcccCCCcCCcceeeCCcCCCCcccceEEEEEEEEecCCCC-chhhhHHHHHH
Confidence            1        2456667776543   4699999999999999999988889999999999999986433 23357899999


Q ss_pred             HHHHHHHHhhccccccCCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhH
Q 000819          592 KAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLS  671 (1268)
Q Consensus       592 ~~~~~~~~~~~~~~~~~~~l~v~f~~~~sl~del~~~s~~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~  671 (1268)
                      ++|.+.++++..+. ...+++++|++++|+++|+++.+..|+++++++|++|++|+++++++++.+++++++||+++|++
T Consensus       532 ~~f~~~~~~~~~~~-~~~~l~~~~~te~Sl~del~~~s~~dv~~~~isyiim~~y~~l~l~~~~~~~~~~v~Sk~~l~l~  610 (1204)
T TIGR00917       532 KAFIQFAKNYLLPN-VQAKLDISFSSERSIEDELKRESTADVITILVSYLVMFAYISLSLGHSKRFKSLFIDSKVLLGIS  610 (1204)
T ss_pred             HHHHHHHHHhhccc-cccceEEEEeccccHHHHHhhccchhHHHHHHHHHHHHHHHHHHHccchhhhhhhhhhhhHHHHH
Confidence            99999998874321 12358999999999999999999999999999999999999999998766667889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhccccceehHHHHHHHhc--CCC---------CHHHHHHHHHHh
Q 000819          672 GVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ--LEL---------PLETRISNALVE  740 (1268)
Q Consensus       672 gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~--~~~---------~~~~~i~~al~~  740 (1268)
                      |++++++|+++++|+++++|+++++++++++|||+|||||||+|+++++|++..  ++.         ++++|+++++++
T Consensus       611 gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifilv~~~~r~~~~~~~~~~~~~~~~~~~~ri~~~l~~  690 (1204)
T TIGR00917       611 GVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGE  690 (1204)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccccccccccCCHHHHHHHHHHH
Confidence            999999999999999999999999878999999999999999999999998753  222         789999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccccCCCCcCC
Q 000819          741 VGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADS  820 (1268)
Q Consensus       741 ~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~fpalL~l~~rr~~~~r~d~~~c~~~~~~~~~~  820 (1268)
                      +|+||++|++|+++||++++++++|++|.||+++|+||+++|++|+|+|||+|++|.||++++|+|++||.+.++.....
T Consensus       691 ~G~sI~ltslt~~~aF~~g~~s~~Pavr~F~~~aa~av~~~fll~it~f~alL~ld~rR~~~~r~d~~~c~~~~~~~~~~  770 (1204)
T TIGR00917       691 VGPSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVALLVLDFKRTEDNRVDCFPCIKGSKSSISA  770 (1204)
T ss_pred             hhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccEEEeeccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999865421110


Q ss_pred             CCCcccccchhHHHHHH----------------------------HhhhccccCCccccccCCCchhhhHHHHHhhhccC
Q 000819          821 DKGIGQRKPGLLARYMK----------------------------ALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRI  872 (1268)
Q Consensus       821 ~~~~~~~~~~~L~r~~k----------------------------~~~~~I~~gldq~~~lP~dSyl~~yf~~~~~~~~~  872 (1268)
                      ........++++.++++                            +++++|+.|+||++++|+|||+.+||+.+++||+.
T Consensus       771 ~~~~~~~~~~~l~~ff~~~yap~L~~~~vki~Vl~~f~~~~~~si~g~~~i~~gLd~~~~~p~dSyl~~yf~~~~~~~~~  850 (1204)
T TIGR00917       771 EKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRIDIGLDQQLALPQDSYLQIYFASLTPLLEV  850 (1204)
T ss_pred             ccCcCcccccHHHHHHHHhcchhhcCCCcceEEEehHHHHHHHHHHHHhhcCCCcCHhhhCCCCCcHHHHHHHHHHhhcc
Confidence            00001122333443332                            57899999999999999999999999999999999


Q ss_pred             CCCEEEEEe-cCCCCchhHhhhhhhcccccCcchHHHHHHHhccCCCCccccCCCCCcHHHHHHhhccccccccc-ccCC
Q 000819          873 GPPLYFVVK-NYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCR-KFTN  950 (1268)
Q Consensus       873 g~pvy~Vv~-~~d~~~~~~~~~~ic~~~~c~~~sl~~~i~~~~~~~~~s~i~~~~~sWlddf~~~l~~~~~~cc~-~~~~  950 (1268)
                      |||||||++ ++||++++ +|+++|+..+|+++|+.++.      ++.+++.+|+++|||||++|+++. .+||| +..+
T Consensus       851 gppvy~Vv~~~~dy~~~~-~q~~lc~~~~c~~~sl~~~~------~~~~~i~~~~~sWlddf~~wl~~~-~~cc~~~~~~  922 (1204)
T TIGR00917       851 GPPVYFVLKGDYNYTDSE-SQNKVCTGGGCNKDSIVNVF------NNLTYIAKPASSWLDDYFDWASPQ-SSCCCRKFTN  922 (1204)
T ss_pred             CCcEEEEEcCCCCCCCHH-HHHHHhcccCCcHHHHHHhh------cccchhcCCchHHHHHHHHHhCcc-ccceeecCCC
Confidence            999999999 68999875 57899999999999999955      455788999999999999999986 57998 4566


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCcCCCCCChhHHHhhHHHHHhcCCCccccCCCCCCccccccccC
Q 000819          951 GSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKG 1030 (1268)
Q Consensus       951 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~F~~~L~~fl~~~p~~~c~~gg~~~y~~~v~~~~ 1030 (1268)
                      +.+|++.+                  +.|..|+.......++|++++|++||++||+++|+.+|++||++.|++++++++
T Consensus       923 ~~~c~~~~------------------~~~~~c~~~~~~~~~~p~~~~F~~~l~~fl~~~~~~~c~~gg~~~y~~~v~~~~  984 (1204)
T TIGR00917       923 GTFCNGPD------------------PSCFRCADLSSNAQGRPSTTQFKEYLPFFLNDNPSADCAKGGHAAYSSAVDLQG  984 (1204)
T ss_pred             CCcCCCcc------------------ccccccccccccccCCCCHHHHHHHHHHHhcCCCccccccccccccccceEeec
Confidence            78887433                  357777642222357999999999999999999999999999999999998765


Q ss_pred             CCCceEEEEEEEEEecccCchhhHHHHHHHHHHHHHhhcccCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819         1031 YENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVV 1110 (1268)
Q Consensus      1031 ~~~~~I~as~f~~~~~~l~~~~d~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv 1110 (1268)
                      ++++.|.+|||++||+++++++|++++++++|++++++++..++++|||+++|+|+|||.+|++++++++++++++|++|
T Consensus       985 ~~~~~I~aS~f~~~h~~l~~~~d~i~a~~~~R~ia~~i~~~~~~~vfpys~~~vf~eQY~~i~~~~~~~l~~a~~~v~~V 1064 (1204)
T TIGR00917       985 HANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPYSVFYVFFEQYLTIWSDALINLGISLGAIFIV 1064 (1204)
T ss_pred             CCCceEEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHhhhccCCccccCcCceehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567999999999999999999999999999999999866789999999999999999999999999999999999999


Q ss_pred             HHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhhccC-CCHHHHHHHHHH
Q 000819         1111 CLITT-CSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSS-GDKNQRMKEALG 1188 (1268)
Q Consensus      1111 ~~ll~-~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~~~-~~~~~r~~~al~ 1188 (1268)
                      +++++ .+++++++++++|++++++++|+|++|||+||++|+++|+|+||++|||+.||.|+|.... +++.+|+++|++
T Consensus      1065 ~~l~l~l~~~~aliv~l~I~~i~~~~~g~M~~~gisLN~vSlv~Li~avGisV~f~~hI~~~f~~~~~~~~~~ra~~al~ 1144 (1204)
T TIGR00917      1065 TLVLLGLNALSAVNVVISVGMIVVNLVGIMHLWNISLNAVSVVNLVMAKGISIEFCSHINAQFSTSKHFSRNHRAKEALG 1144 (1204)
T ss_pred             HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            99998 4999999999999999999999999999999999999999999999999999999999864 589999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 000819         1189 TMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 1248 (1268)
Q Consensus      1189 ~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~g 1248 (1268)
                      ++|+||++|+++||++|+++|+|+++++|++|||+|+++++++|++|||+||||+||++|
T Consensus      1145 ~vg~~v~~g~tlT~~~g~~~L~f~~s~if~vfff~m~l~iv~~g~~HGLvfLPVlLS~~G 1204 (1204)
T TIGR00917      1145 GMGSSVFSGITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALHGLVFLPVLLSYIG 1204 (1204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999888999999999999999999999999999999999999999999999987

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism] Back     alignment and domain information
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog Back     alignment and domain information
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only] Back     alignment and domain information
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms] Back     alignment and domain information
>COG1033 Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>TIGR00833 actII Transport protein Back     alignment and domain information
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN Back     alignment and domain information
>COG1033 Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase Back     alignment and domain information
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>PRK10503 multidrug efflux system subunit MdtB; Provisional Back     alignment and domain information
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family Back     alignment and domain information
>PRK10555 aminoglycoside/multidrug efflux system; Provisional Back     alignment and domain information
>PRK10614 multidrug efflux system subunit MdtC; Provisional Back     alignment and domain information
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium) Back     alignment and domain information
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PRK09577 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09579 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK15127 multidrug efflux system protein AcrB; Provisional Back     alignment and domain information
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>TIGR00833 actII Transport protein Back     alignment and domain information
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria Back     alignment and domain information
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional Back     alignment and domain information
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors [] Back     alignment and domain information
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria Back     alignment and domain information
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN Back     alignment and domain information
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog Back     alignment and domain information
>PRK09579 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10614 multidrug efflux system subunit MdtC; Provisional Back     alignment and domain information
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors [] Back     alignment and domain information
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family Back     alignment and domain information
>PRK09577 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK15127 multidrug efflux system protein AcrB; Provisional Back     alignment and domain information
>PRK10555 aminoglycoside/multidrug efflux system; Provisional Back     alignment and domain information
>PRK10503 multidrug efflux system subunit MdtB; Provisional Back     alignment and domain information
>COG4258 Predicted exporter [General function prediction only] Back     alignment and domain information
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family Back     alignment and domain information
>PRK13022 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium) Back     alignment and domain information
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>TIGR00966 3a0501s07 protein-export membrane protein SecF Back     alignment and domain information
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only] Back     alignment and domain information
>TIGR01129 secD protein-export membrane protein SecD Back     alignment and domain information
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PRK13022 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PRK05812 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PRK08578 preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional Back     alignment and domain information
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family Back     alignment and domain information
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PRK12933 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00917 2A060601 Niemann-Pick C type protein family Back     alignment and domain information
>PRK05812 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>TIGR00966 3a0501s07 protein-export membrane protein SecF Back     alignment and domain information
>TIGR01129 secD protein-export membrane protein SecD Back     alignment and domain information
>PRK13021 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PRK08578 preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>PRK08343 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PRK12933 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>PRK13021 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms] Back     alignment and domain information
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion] Back     alignment and domain information
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion] Back     alignment and domain information
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK08343 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion] Back     alignment and domain information
>COG4258 Predicted exporter [General function prediction only] Back     alignment and domain information
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase Back     alignment and domain information
>PF03024 Folate_rec: Folate receptor family; InterPro: IPR018143 This entry represents a domain found in folate receptors and at the N terminus of hedgehog-interacting proteins Back     alignment and domain information
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1268
3gkh_A232 Npc1(ntd) Length = 232 4e-23
3qnt_A265 Npc1l1 (Ntd) Structure Length = 265 3e-18
>pdb|3GKH|A Chain A, Npc1(ntd) Length = 232 Back     alignment and structure 
Iteration: 1

 Score =  107 bits (267), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 105/223 (47%), Gaps = 19/223 (8%)
Query: 53  CAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTI---TGNVCCTEDQFDTLR 109
           C  Y  CG     K  NC Y+ P           VQ LCP       ++CC   Q  TL+
Sbjct: 5   CVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGQVSLCCDVRQLQTLK 64
Query: 110 TQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTS----VSKVSNN--LTVDGI 163
             +Q  + FL  CP+C  N LNLFCELTCSP QS F+ VT+    V  V+N     V  +
Sbjct: 65  DNLQLPLQFLSRCPSCFYNLLNLFCELTCSPRQSQFLQVTATEDYVDPVTNQTKTNVKEL 124
Query: 164 DYYITDTFGQGLYESCKDVKFGTMNTRALDFIGG---GAQNFKDWFAFIGRRAAANLPGS 220
            YY+  +F   +Y +C+DV+  + N +AL  + G    A    +W  ++  +       +
Sbjct: 125 QYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKDADACQATNWIEYMFNKDNGQ---A 181
Query: 221 PYTIKFWPSAPELSGMIPMNVSAYSCADG----SLGCSCGDCT 259
           P+TI    S   + GM PMN +   C +     +  CSC DC+
Sbjct: 182 PFTITPVFSDFPVHGMEPMNNATKGCDESVDEVTAPCSCQDCS 224
>pdb|3QNT|A Chain A, Npc1l1 (Ntd) Structure Length = 265 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1268
3qnt_A265 Niemann-PICK C1-like protein 1; cholesterol transp 3e-75
3gkj_A232 Niemann-PICK C1 protein; oxysterol, cholesterol, c 3e-74
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>3qnt_A Niemann-PICK C1-like protein 1; cholesterol transport protein, transport protein; HET: NAG; 2.83A {Homo sapiens} Length = 265 Back     alignment and structure
 Score =  249 bits (636), Expect = 3e-75
 Identities = 75/257 (29%), Positives = 106/257 (41%), Gaps = 29/257 (11%)

Query: 47  KHVEEFCAMYDICGARSD-------RKVLNCPYNIPSVKPDDLLSSKVQSLCPTI----T 95
            H   +CA YD CG   +          ++C  N P+ K        +Q +CP +     
Sbjct: 8   IHQPGYCAFYDECGKNPELSGSLMTLSNVSCLSNTPARKITGDHLILLQKICPRLYTGPN 67

Query: 96  GNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVS 155
              CC+  Q  +L   +      L  CPAC  NF+NL C  TCSPNQSLFINVT V+++ 
Sbjct: 68  TQACCSAKQLVSLEASLSITKALLTRCPACSDNFVNLHCHNTCSPNQSLFINVTRVAQLG 127

Query: 156 NN--LTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFI----GGGAQNFKDWFAFI 209
                 V   + +   +F +  Y+SC  V+     T A+  +    G    N + W  F 
Sbjct: 128 AGQLPAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATLAVGTMCGVYGSALCNAQRWLNFQ 187

Query: 210 GRRAAANLPGSPYTIKF---WPSAPELSGMIPMNVSAYSC----ADGSLGCSCGDCTSSP 262
           G         +P  I F    P     SG+ P+N     C     D    CSC DC +S 
Sbjct: 188 G---DTGNGLAPLDITFHLLEPGQAVGSGIQPLNEGVARCNESQGDDVATCSCQDCAAS- 243

Query: 263 VCSSTAPPPHKSSSCSV 279
            C + A P    S+  +
Sbjct: 244 -CPAIARPQALDSTFYL 259
>3gkj_A Niemann-PICK C1 protein; oxysterol, cholesterol, cholesterol transfer, disease mutati endosome, glycoprotein, lysosome, membrane, transmembrane; HET: NAG HC3; 1.60A {Homo sapiens} PDB: 3gkh_A* 3gki_A* Length = 232 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1268
d1iwga7199 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux trans 2e-07
d1iwga8222 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux t 1e-04
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Length = 199 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Multidrug efflux transporter AcrB transmembrane domain
superfamily: Multidrug efflux transporter AcrB transmembrane domain
family: Multidrug efflux transporter AcrB transmembrane domain
domain: Multidrug efflux transporter AcrB transmembrane domain
species: Escherichia coli [TaxId: 562]

 Score = 50.5 bits (120), Expect = 2e-07
 Identities = 23/159 (14%), Positives = 59/159 (37%), Gaps = 5/159 (3%)

Query: 1094 RTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVN 1153
               +  L  AI  VF+V  +   +F ++ I  + + ++++    V+A     +N +++  
Sbjct: 39   HEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFG 98

Query: 1154 LVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSR 1213
            +V+A+G+ V+  + +         ++    KEA       +   +    +V   V     
Sbjct: 99   MVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMA 158

Query: 1214 TEVFVVYYFQMYLALVLLG-----FLHGLVFLPVVLSVF 1247
                         ++ ++       L  L+  P + +  
Sbjct: 159  FFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATM 197
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Length = 222 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1268
d1iwga7199 Multidrug efflux transporter AcrB transmembrane do 99.89
d1iwga7199 Multidrug efflux transporter AcrB transmembrane do 99.82
d1iwga8222 Multidrug efflux transporter AcrB transmembrane do 99.78
d1iwga8222 Multidrug efflux transporter AcrB transmembrane do 99.7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Multidrug efflux transporter AcrB transmembrane domain
superfamily: Multidrug efflux transporter AcrB transmembrane domain
family: Multidrug efflux transporter AcrB transmembrane domain
domain: Multidrug efflux transporter AcrB transmembrane domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.6e-23  Score=156.74  Aligned_cols=156  Identities=13%  Similarity=0.248  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCEEECCEEEEEH
Q ss_conf             99998989899999999999999731245899999999999999999999852545147899999755035011044221
Q 000819         1091 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 1170 (1268)
Q Consensus      1091 ~i~~~~~~~l~~al~~vfiv~~ll~~s~~~~li~~~~i~~~~i~~~G~M~l~gi~Ln~vs~v~l~iaiGlsVDf~iHi~~ 1170 (1268)
                      .-+++...++.++++++++++++++||++.++++.+++.+.+++++|.|+++|+++|.++++.+++++|++|||++|+.+
T Consensus        36 ~si~~~~~~l~ia~~lv~~vl~l~~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~~i~i~~  115 (199)
T d1iwga7          36 ISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVE  115 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             99999999999999999999999986015463110011002677788762378834777888788898884233788999


Q ss_pred             HHHCC---C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             34414---8-9999999999999779999999898888887640146224---899999999999999999999999989
Q 000819         1171 AFSVS---S-GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEV---FVVYYFQMYLALVLLGFLHGLVFLPVV 1243 (1268)
Q Consensus      1171 ~f~~~---~-~~~~~ri~~al~~~G~~V~~g~~lT~~~Gi~vL~fs~~~i---~~~f~f~~~~~~v~~~~~~~Li~LPvl 1243 (1268)
                      ++.++   . .++++++.++.+++|+|++.++ +|+.+|+.+|++++...   ++.+. ......+.++++++++++|++
T Consensus       116 ~~~~~~~~~g~~~~eAi~~a~~~~g~~i~~s~-lTt~~~f~~l~~~~~~~~~~~~~~g-~~i~~gv~~s~i~al~llPal  193 (199)
T d1iwga7         116 NVERVMAEEGLPPKEATRKSMGQIQGALVGIA-MVLSAVFVPMAFFGGSTGAIYRQFS-ITIVSAMALSVLVALILTPAL  193 (199)
T ss_dssp             HHHHHHHHTSCCSHHHHHHGGGTHHHHHHHHH-HHHHHHHTTTTCCCTTSHHHHHHHH-HHHHHHHHHHHHHTTTHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999986699889999998767665788999-9999988988307882999999999-999999999999999999999


Q ss_pred             HHHHC
Q ss_conf             86209
Q 000819         1244 LSVFG 1248 (1268)
Q Consensus      1244 Ls~~g 1248 (1268)
                      ++++.
T Consensus       194 l~~~~  198 (199)
T d1iwga7         194 CATML  198 (199)
T ss_dssp             HHHSC
T ss_pred             HHHHC
T ss_conf             99864
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure