Citrus Sinensis ID: 000822

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------127

MEEETQVGSEVPVMKAVEDIDPIKETNGGLPQVGKEGKKEEEENALDAEFIKVEKEALDVKEVSHMAEPAAAEEDDKPSVVDRSSSSSSRELLEANEKVKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQVSDWLQHFIFLGFFTVNSLQDYG

cccccHHcccccHHHHHHcccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc

cccHHHcHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcc

meeetqvgsevpvmkavedidpiketngglpqvgkegkkeeeENALDAEFIKVEKEAldvkevshmaepaaaeeddkpsvvdrssssssRELLEANEKVKELEIELERAATALKNAEIEnarlqddvLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHkqsgshaesESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRnsdenfcktDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVelkssdserEVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKersaededranmshqrsIELEDLFQTshsklegtgkRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANnkannsssENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRsghferesgglvetnlkLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQVSDWLQHFIFLGFFTVNSLQDYG

meeetqvgsevpvmkavedidpiketngglpqvgkegkkEEEENALDAEFIKVEKEALDVKEVSHMAepaaaeeddkpsvvdrssssssrelleaNEKVKELEIELERAATAlknaeienarlqddvliTKEKLEesgkkceeleigQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKqsgshaesesqRALEFERLLETANVSAKEVEGQMASLQEELKglnekisekeKVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETgaaaatasqrNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLvelkssdserevREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELIlnqsntrsseleeelritkersaededranmshqrsieledlfqtshsklegtgkrvNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNaaadekrklqdtsngynEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEAnnkannsssenELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRftqrdieannlNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQtrsghferesgglvetnLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQfkeevenvkvsaagkeaelnsKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQVSDWLQHFIFLGFFTVNSLQDYG

MEEETQVGSEVPVMKAVEDIDPIKETNGGLPQVgkegkkeeeeNALDAEFIKVEKEALDVKEVSHMaepaaaeeDDKPSVVDRssssssRELLEANEKVKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNekisekekveeelkRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDsllsqalannaelelklksleeQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSveleqqlnlvelKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYneklaeaenllellrndlnMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQvveannkannsssenellvetnnQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAetrkfeleetllklknlestVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQVSDWLQHFIFLGFFTVNSLQDYG

*************************************************************************************************************************************************************************************************************************************************************************************************************KLQLLDLEQRF***EALITNLTQELDL********************************************************************************************************************************************************************************************************************************************************************************************************************LELLLEAEKYR*******************************************************************************************************************************************************************************************************QLAEAAGKYALLKEELDSYFIKVTS***********************************************************************************************LHEAIQRFT***********************************************************************LVETNLKLTEDLALYETKLSDLQAKLSATIV******************************************************************************************FALETRIKELEELLVNVETQFK******************************RNALYEQVIQLQRELQIAQTAIAEQVSDWLQHFIFLGFFTVNS*****

**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************HFIFLGFFTVN******

**********VPVMKAVEDIDPIKETNGGLP************NALDAEFIKVEKEALDVKEVSHM*******************************KVKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFE*****************LEFERLLETANVSAKEVEGQMASLQEELKGLNEKISE************TEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQ*************RNLELEDIIRASNE********LRELEPRFIAAEQRSVELEQQLNLVELKS**************SQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQS************ITKERS**********HQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLE**************DKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVL**************ESLMRESEMKLQDALANIT**********EKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEA*************LVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYE*********AETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQVSDWLQHFIFLGFFTVNSLQDYG

**********VPVMKAVEDIDPIKETNGGLPQVGKEGKKEEEENALDAEFIKVEKEALDVKEVSHMAEPAAAEEDDKPSVVDRSSSSSSRELLEANEKVKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQVSDWLQHFIFLGFFTVNSLQDYG

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MEEETQVGSEVPVMKAVEDIDPIKETNGGLPQVGKEGKKEEEENALDAEFIKVEKEALDVKEVSHMAEPAAAEEDDKPSVVDRSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEESGKKCEELEIGQKKFQEQIVEAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHKQSGSHAESESQRALEFERLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLGLSKLQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFCKTDSLxxxxxxxxxxxxxxxxxxxxxxxxxxxxAATASQRxxxxxxxxxxxxxxxxxxxxxLRELEPRFIAAEQRSVELEQQLNLVELKSSDSERExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxANMSHQRSIELEDLFQTSHSKLEGTGKRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVCELASELEAFQARTSSLEVAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSEMKLQDALANITSRDSExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLASHMNTVTELTEQHSRALELxxxxxxxxxxxxxxxxxxxxxFTQRDIExxxxxxxxxxxxxxxxxxxxxxxxxxxxAETRKFExxxxxxxxxxxxxxxxxxxxxxxxxxxxSGGLVETxxxxxxxxxxxxxxxxxxxxxLSATIVExxxxxxxxxxxxxxxxxxxxxLTSExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVKVSAAGKEAELNSKLEDHAHEVKDxxxxxxxxxxxxxxxxxxxxxIAEQVSDWLQHFIFLGFFTVNSLQDYG

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1267
224086600		1259	predicted protein [Populus trichocarpa]	0.916	0.922	0.607	0.0
147862641		1430	hypothetical protein VITISV_033286 [Viti	0.958	0.848	0.613	0.0
356540952		1304	PREDICTED: uncharacterized protein LOC10	0.955	0.927	0.556	0.0
356544363		1321	PREDICTED: uncharacterized protein LOC10	0.929	0.891	0.545	0.0
357474015		1322	hypothetical protein MTR_4g076030 [Medic	0.934	0.895	0.540	0.0
449460006		1582	PREDICTED: uncharacterized protein LOC10	0.858	0.687	0.579	0.0
449502175		1085	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.852	0.995	0.581	0.0
240254562		1333	uncharacterized protein [Arabidopsis tha	0.948	0.901	0.549	0.0
25408221		1269	probable myosin heavy chain [imported] -	0.912	0.910	0.527	0.0
414883542		768	TPA: hypothetical protein ZEAMMB73_30987	0.604	0.997	0.648	0.0

>gi\|224086600\|ref\|XP_002307915.1\| predicted protein [Populus trichocarpa] gi\|222853891\|gb\|EEE91438.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1304 bits (3375), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 763/1255 (60%), Positives = 940/1255 (74%), Gaps = 94/1255 (7%)

Query: 1    MEEETQVGSEVPVMKAVEDI-DPIKETNGGLPQVGKEGKKEEEENALDAEFIKVEKEALD 59
            ME ETQV SEVPV+K   D+ D IK TNG L  V KEG+KEE+E   D EFIKVEKE+LD
Sbjct: 1    MEGETQVSSEVPVVKGDPDVADLIKLTNGDLTHVEKEGRKEEDET--DGEFIKVEKESLD 58

Query: 60   VKEV-SHMAEPAAAEEDDKPSVVDRSSSSSSRELLEANEKVKELEIELERAATALKNAEI 118
            VK+  SH AE  +A E DKPSVV+RS S S+RELLEA EK+KELE+ELER + ALK++E 
Sbjct: 59   VKDGGSHTAEVKSAGEADKPSVVERSLSGSTRELLEAQEKLKELELELERVSAALKHSES 118

Query: 119  ENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEA 178
            EN  L+DDVL+  EKL+ESGKK  ELEI  KK QEQI+EA EK++++L+ ++EALQA+E 
Sbjct: 119  ENTLLKDDVLLANEKLDESGKKYGELEISHKKLQEQIIEAEEKFSAQLHTLQEALQAKET 178

Query: 179  KRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQR 238
            K KEL EVKE+FDG++LE+E SR ++QELEH+L+ S  EA+KFEELHK+SG HAESE+QR
Sbjct: 179  KHKELVEVKESFDGITLELENSRKKMQELEHELEVSSGEAKKFEELHKESGLHAESETQR 238

Query: 239  ALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEEL 298
            ALEFERLLE A +SAKE+E QMA+LQEE+KGL EK++   KVE  LK +  E+SA  EEL
Sbjct: 239  ALEFERLLEAAKLSAKEMENQMATLQEEVKGLYEKVAGNLKVEGALKSTTAELSAANEEL 298

Query: 299  GLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKV 358
              SK Q LD+EQR SSKEALI  LTQELDL KASESQ KE+  AL+NLL   KE+L AKV
Sbjct: 299  AASKSQQLDIEQRLSSKEALIGELTQELDLKKASESQVKEDFLALENLLTATKEDLQAKV 358

Query: 359  SELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIA 418
            SE+E +KL+LQEE+N RESVEA LKT EAQV+ V EEL KV KEKEALEAAMADLT N A
Sbjct: 359  SEMEGMKLRLQEEINTRESVEAGLKTHEAQVATVQEELAKVLKEKEALEAAMADLTSNAA 418

Query: 419  RMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQ 478
            +MKELC ELEEKL+ SDENFCK DSLLSQAL+N+AELE KLK LE+ H+E+GAAAATASQ
Sbjct: 419  QMKELCGELEEKLKTSDENFCKADSLLSQALSNSAELEQKLKFLEDLHSESGAAAATASQ 478

Query: 479  RNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVRE 538
            +NLELED+IRASNEAAEEAKSQLRELE RF+AAE+++VELEQQLNLVELKSSD+ER+VRE
Sbjct: 479  KNLELEDLIRASNEAAEEAKSQLRELEIRFVAAEKKNVELEQQLNLVELKSSDAERQVRE 538

Query: 539  FSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKER 598
            FSEK+S+LST LKEVE EK QL  QM +Y++KI+ LE  LNQS++R+SELEEEL+I KE+
Sbjct: 539  FSEKISELSTTLKEVEGEKNQLSAQMEEYQEKISHLESSLNQSSSRNSELEEELKIAKEK 598

Query: 599  SAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKL 658
             A  EDRA M +QRS+ELEDLFQTSHS+LE  GK+ +E  LLLEAEKYRI+ELEEQ S  
Sbjct: 599  CAGHEDRAKMHYQRSLELEDLFQTSHSRLEDAGKKASEFVLLLEAEKYRIKELEEQNSAF 658

Query: 659  EKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEK 718
            EKKC +AEA S++Y DK+ ELASE+EA+QA++SSLEV+LQMA +KE ELTE LN   DEK
Sbjct: 659  EKKCVDAEADSRKYLDKISELASEIEAYQAKSSSLEVSLQMAGEKETELTELLNLVTDEK 718

Query: 719  RKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAE 778
            ++L++ S+  NEKL+EAENL+ +LRN+L + QE+LESIE DLKAAGL+E+D+M KLKSAE
Sbjct: 719  KRLEEASSSSNEKLSEAENLVGVLRNELIVMQEKLESIENDLKAAGLKESDIMVKLKSAE 778

Query: 779  EQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLE 838
            EQLEQQ ++LE+ATSR SELESLHE+L R+SE+KLQ+AL N T+RDSEAKS  EKL  LE
Sbjct: 779  EQLEQQEKLLEEATSRKSELESLHEALTRDSEIKLQEALTNFTNRDSEAKSLFEKLNTLE 838

Query: 839  GQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENE 898
             QVK Y+EQ+ E  G+ ALLKEELD   +K+ +LE++NEEL+ Q+VEA  K +NS SENE
Sbjct: 839  DQVKEYKEQITEVTGRSALLKEELDLCLLKMVALETSNEELKSQIVEAETKFSNSFSENE 898

Query: 899  LLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEA 958
            LLVETNNQLKSK+ ELQELL+SA                                    +
Sbjct: 899  LLVETNNQLKSKIDELQELLNSA------------------------------------S 922

Query: 959  RVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEE 1018
            R+  AE QL EAIQ  T +D+E  +LNEK+  LEGQ+K YEEQA EAST++E+RK ELEE
Sbjct: 923  RMMHAETQLQEAIQSLTLKDVETRDLNEKLKALEGQVKLYEEQAHEASTISESRKGELEE 982

Query: 1019 TLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVE 1078
            TLLK+ +LE+ +EEL+T+SGHFE+ESG L E NLKLT++LA YE+KL DL+AKLS  + E
Sbjct: 983  TLLKVTHLETVLEELKTKSGHFEKESGVLAEDNLKLTQELASYESKLRDLEAKLSTILSE 1042

Query: 1079 KDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQ 1138
            KD T+EQLH SKKA EDL Q+LT E Q LQ+QI                           
Sbjct: 1043 KDGTIEQLHISKKAFEDLRQQLTDEGQKLQSQI--------------------------- 1075

Query: 1139 LEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVS 1198
                        E+ K+E+       AEK AL+T ++ELE+ L     + KE++E     
Sbjct: 1076 ------------ESLKAEV-------AEKSALQTSLEELEKQLTTAAVELKEQLE----- 1111

Query: 1199 AAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQVSDWLQHFI 1253
               KEA L     D   + K+ + L  QV +L+++LQ A   + E+VS +L  F+
Sbjct: 1112 ---KEAALKKSFADLEAKNKEVSHLENQVKELEQKLQEADAKLLEKVSLYLPLFM 1163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|147862641\|emb\|CAN81488.1\| hypothetical protein VITISV_033286 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356540952\|ref\|XP_003538948.1\| PREDICTED: uncharacterized protein LOC100801514 [Glycine max]	Back alignment and taxonomy information

>gi\|356544363\|ref\|XP_003540622.1\| PREDICTED: uncharacterized protein LOC100792883 [Glycine max]	Back alignment and taxonomy information

>gi\|357474015\|ref\|XP_003607292.1\| hypothetical protein MTR_4g076030 [Medicago truncatula] gi\|355508347\|gb\|AES89489.1\| hypothetical protein MTR_4g076030 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449460006\|ref\|XP_004147737.1\| PREDICTED: uncharacterized protein LOC101211772 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449502175\|ref\|XP_004161564.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101225995, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|240254562\|ref\|NP_565741.4\| uncharacterized protein [Arabidopsis thaliana] gi\|330253560\|gb\|AEC08654.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|25408221\|pir\|\|F84730 probable myosin heavy chain [imported] - Arabidopsis thaliana	Back alignment and taxonomy information

>gi\|414883542\|tpg\|DAA59556.1\| TPA: hypothetical protein ZEAMMB73_309877 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1267
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-26
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-23
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-21
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-19
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-18
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-16
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-15
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-13
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-13
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-12
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-11
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	4e-11
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	5e-11
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-11
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-10
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-10
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-10
pfam01576		859	pfam01576, Myosin_tail_1, Myosin tail	6e-10
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-09
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	1e-09
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-09
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	2e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-09
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-09
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-09
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	8e-09
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	8e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-09
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-08
PRK01156		895	PRK01156, PRK01156, chromosome segregation protein	4e-08
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-08
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-08
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	1e-07
pfam13514		1118	pfam13514, AAA_27, AAA domain	1e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	2e-07
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	2e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-07
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-07
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-07
pfam13514		1118	pfam13514, AAA_27, AAA domain	1e-06
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
pfam13514		1118	pfam13514, AAA_27, AAA domain	2e-06
COG5283		1213	COG5283, COG5283, Phage-related tail protein [Func	3e-06
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-06
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-06
COG1511		780	COG1511, COG1511, Predicted membrane protein [Func	9e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
PRK11281		1113	PRK11281, PRK11281, hypothetical protein; Provisio	1e-05
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	2e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-05
pfam05622		713	pfam05622, HOOK, HOOK protein	4e-05
PRK01156		895	PRK01156, PRK01156, chromosome segregation protein	5e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-05
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	9e-05
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	1e-04
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PRK01156		895	PRK01156, PRK01156, chromosome segregation protein	2e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	3e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
COG4372		499	COG4372, COG4372, Uncharacterized protein conserve	3e-04
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	3e-04
PHA02562		562	PHA02562, 46, endonuclease subunit; Provisional	4e-04
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-04
PRK11281		1113	PRK11281, PRK11281, hypothetical protein; Provisio	5e-04
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	5e-04
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	5e-04
PLN02939		977	PLN02939, PLN02939, transferase, transferring glyc	5e-04
COG3264		835	COG3264, COG3264, Small-conductance mechanosensiti	6e-04
COG4942		420	COG4942, COG4942, Membrane-bound metallopeptidase	8e-04
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
PRK11281		1113	PRK11281, PRK11281, hypothetical protein; Provisio	0.001
COG4372		499	COG4372, COG4372, Uncharacterized protein conserve	0.001
pfam01496		707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	0.001
PRK09039		343	PRK09039, PRK09039, hypothetical protein; Validate	0.001
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
COG4942		420	COG4942, COG4942, Membrane-bound metallopeptidase	0.002
COG1269		660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.002
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.003
TIGR03345		852	TIGR03345, VI_ClpV1, type VI secretion ATPase, Clp	0.003
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	0.004
pfam05622		713	pfam05622, HOOK, HOOK protein	0.004
PHA02562		562	PHA02562, 46, endonuclease subunit; Provisional	0.004
PRK04863		1486	PRK04863, mukB, cell division protein MukB; Provis	0.004
COG5022		1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	0.004
COG1463		359	COG1463, Ttg2C, ABC-type transport system involved	0.004

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

 Score =  117 bits (294), Expect = 3e-26
 Identities = 160/821 (19%), Positives = 307/821 (37%), Gaps = 55/821 (6%)

Query: 39   KEEEENALDAEFIKVEKEALDVKEVSHMAEPAAAEEDDKPSVVDRSSSSSSRELLEANEK 98
              EE   L  E  + E+E  ++       E    E   + S ++       +EL     +
Sbjct: 237  LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296

Query: 99   VKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEA 158
            +  LE + +     L N E +   L+  +   + KL+E  ++  ELE   ++ +E++   
Sbjct: 297  ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356

Query: 159  GEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEA 218
              +       ++E     E   ++L  ++     L L+I    + ++ LE +L+   D  
Sbjct: 357  EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416

Query: 219  RKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKE 278
             + ++  +      + E     E +  LE      +E++ ++  L+E L+ L E   E E
Sbjct: 417  ERLQQ--EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE---ELE 471

Query: 279  KVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKE 338
            + E+ L  +  E++ +Q  L      L  L++        +  L +    +        E
Sbjct: 472  EAEQALDAAERELAQLQARLDS----LERLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527

Query: 339  EIS-------ALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSN 391
             IS       A++  L    + +  +        +   ++          L + +     
Sbjct: 528  LISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQ 587

Query: 392  VNEE------------LDKVSKEKEALEAAMADLTGNIARMKELCSELEE-KLRNSDENF 438
             N+                + K    L  A++ L G +  + +L + LE  K        
Sbjct: 588  GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRI 647

Query: 439  CKTDSLL---------------SQALANN---AELELKLKSLEEQHNETGAAAATASQRN 480
               D  L               S  L       ELE K++ LEE+  E   A A   +  
Sbjct: 648  VTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKEL 707

Query: 481  LELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFS 540
             ELE+ +    +  EE   Q+  L       E    +LE+++  +  + ++ E E+ E  
Sbjct: 708  EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767

Query: 541  EKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSA 600
            E+L +    L E E E ++L  Q+   K+++  L   L        EL  EL +  E +A
Sbjct: 768  ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL-------DELRAELTLLNEEAA 820

Query: 601  EDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEK 660
               +R     +R    E   +    ++E   + +  L   +E  +  I+ELE ++  L  
Sbjct: 821  NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN 880

Query: 661  KCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAA-ADEKR 719
            +    E        ++ EL+ EL   +++ S L   L+   +K  +L   L         
Sbjct: 881  ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940

Query: 720  KLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEE 779
              +  S  Y+  L EAE L   + +D    + RL+ +E  +K  G      +E+ +  +E
Sbjct: 941  LQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKE 1000

Query: 780  QLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANI 820
            + +  T   E  T     LE   E + RE+  + +D    +
Sbjct: 1001 RYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQV 1041

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|144972 pfam01576, Myosin_tail_1, Myosin tail	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|205692 pfam13514, AAA_27, AAA domain	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|205692 pfam13514, AAA_27, AAA domain	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|205692 pfam13514, AAA_27, AAA domain	Back alignment and domain information

>gnl\|CDD\|227608 COG5283, COG5283, Phage-related tail protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224428 COG1511, COG1511, Predicted membrane protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|236892 PRK11281, PRK11281, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|218661 pfam05622, HOOK, HOOK protein	Back alignment and domain information

>gnl\|CDD\|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|222878 PHA02562, 46, endonuclease subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|236892 PRK11281, PRK11281, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups	Back alignment and domain information

>gnl\|CDD\|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|236892 PRK11281, PRK11281, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>gnl\|CDD\|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family	Back alignment and domain information

>gnl\|CDD\|181619 PRK09039, PRK09039, hypothetical protein; Validated	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|218661 pfam05622, HOOK, HOOK protein	Back alignment and domain information

>gnl\|CDD\|222878 PHA02562, 46, endonuclease subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|235316 PRK04863, mukB, cell division protein MukB; Provisional	Back alignment and domain information

>gnl\|CDD\|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]	Back alignment and domain information

>gnl\|CDD\|224380 COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1267
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	100.0
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	100.0
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	100.0
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.98
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	99.9
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	99.84
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	99.77
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	99.73
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	99.73
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	99.71
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	99.71
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	99.68
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	99.67
PRK02224		880	chromosome segregation protein; Provisional	99.63
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	99.58
PRK02224		880	chromosome segregation protein; Provisional	99.55
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	99.55
PRK03918		880	chromosome segregation protein; Provisional	99.46
PRK03918		880	chromosome segregation protein; Provisional	99.38
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	99.26
KOG0996		1293	consensus Structural maintenance of chromosome pro	98.99
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	98.98
PRK01156		895	chromosome segregation protein; Provisional	98.94
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	98.73
KOG0962		1294	consensus DNA repair protein RAD50, ABC-type ATPas	98.71
PRK01156		895	chromosome segregation protein; Provisional	98.71
KOG0996		1293	consensus Structural maintenance of chromosome pro	98.61
PRK04863		1486	mukB cell division protein MukB; Provisional	98.54
PRK04863		1486	mukB cell division protein MukB; Provisional	98.45
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	98.32
PRK04778		569	septation ring formation regulator EzrA; Provision	98.22
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	98.21
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	98.2
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.19
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	98.19
KOG4673		961	consensus Transcription factor TMF, TATA element m	98.18
KOG0933		1174	consensus Structural maintenance of chromosome pro	98.17
PRK04778		569	septation ring formation regulator EzrA; Provision	98.1
PF00038		312	Filament: Intermediate filament protein; InterPro:	98.0
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	97.98
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.96
PF00038		312	Filament: Intermediate filament protein; InterPro:	97.87
KOG0964		1200	consensus Structural maintenance of chromosome pro	97.86
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	97.84
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	97.82
KOG0933		1174	consensus Structural maintenance of chromosome pro	97.82
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	97.81
KOG0971		1243	consensus Microtubule-associated protein dynactin	97.66
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	97.65
KOG4673		961	consensus Transcription factor TMF, TATA element m	97.57
PF14915		305	CCDC144C: CCDC144C protein coiled-coil region	97.55
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.54
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	97.5
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	97.49
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	97.43
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	97.41
PHA02562		562	46 endonuclease subunit; Provisional	97.41
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.33
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	97.32
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	97.3
PRK11637		428	AmiB activator; Provisional	97.28
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	97.25
PHA02562		562	46 endonuclease subunit; Provisional	97.2
KOG0962		1294	consensus DNA repair protein RAD50, ABC-type ATPas	97.1
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.09
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	97.01
KOG0964		1200	consensus Structural maintenance of chromosome pro	97.0
PF07111		739	HCR: Alpha helical coiled-coil rod protein (HCR);	96.99
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	96.9
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	96.88
PRK11637		428	AmiB activator; Provisional	96.83
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	96.82
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	96.81
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	96.79
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	96.79
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.72
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	96.66
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.64
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	96.61
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.61
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.4
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.36
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	96.32
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.3
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.21
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	96.14
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.06
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	96.04
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	95.98
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	95.93
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	95.78
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	95.62
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	95.38
KOG0018		1141	consensus Structural maintenance of chromosome pro	95.32
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	95.29
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	94.92
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	94.69
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	94.56
KOG1003		205	consensus Actin filament-coating protein tropomyos	94.54
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.18
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.02
COG4942		420	Membrane-bound metallopeptidase [Cell division and	93.4
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.02
PRK09039		343	hypothetical protein; Validated	92.96
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	92.89
PF13514		1111	AAA_27: AAA domain	92.81
PRK09039		343	hypothetical protein; Validated	92.78
PF05911		769	DUF869: Plant protein of unknown function (DUF869)	92.77
KOG0963		629	consensus Transcription factor/CCAAT displacement	92.64
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	92.43
COG4942		420	Membrane-bound metallopeptidase [Cell division and	92.08
PF14662		193	CCDC155: Coiled-coil region of CCDC155	92.0
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	91.91
PF14915		305	CCDC144C: CCDC144C protein coiled-coil region	91.44
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	91.41
KOG1003		205	consensus Actin filament-coating protein tropomyos	91.08
KOG4593		716	consensus Mitotic checkpoint protein MAD1 [Cell cy	90.95
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	90.62
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	89.98
COG4477		570	EzrA Negative regulator of septation ring formatio	89.92
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	89.08
PF06008		264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	88.94
PF15450		531	DUF4631: Domain of unknown function (DUF4631)	88.63
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	88.59
COG3883		265	Uncharacterized protein conserved in bacteria [Fun	88.48
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	87.96
KOG1937		521	consensus Uncharacterized conserved protein [Funct	86.18
COG1842		225	PspA Phage shock protein A (IM30), suppresses sigm	86.13
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	85.7
KOG0963		629	consensus Transcription factor/CCAAT displacement	85.63
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	85.35
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	84.81
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	84.35
PF12795		240	MscS_porin: Mechanosensitive ion channel porin dom	84.33
KOG0018		1141	consensus Structural maintenance of chromosome pro	83.97
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	83.88
COG4372		499	Uncharacterized protein conserved in bacteria with	83.77
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	83.39
PF13514		1111	AAA_27: AAA domain	83.37
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	82.8
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	82.69
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	82.67
PF06705		247	SF-assemblin: SF-assemblin/beta giardin	82.49
PF07111		739	HCR: Alpha helical coiled-coil rod protein (HCR);	82.33
COG5185		622	HEC1 Protein involved in chromosome segregation, i	82.33
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	81.44
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	81.15
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	80.01

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

Probab=100.00  E-value=7e-76  Score=759.11  Aligned_cols=927  Identities=26%  Similarity=0.350  Sum_probs=849.1

Q ss_pred             hhHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhH-------HHHHHHHHHHH
Q 000822          115 NAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAE-------EAKRKELAEVK  187 (1267)
Q Consensus       115 ~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~e~~~~~~~e~~~L~~~lq~~-------ee~~~~L~~~k  187 (1267)
                      +.+++|.++++++..+++++.+.+...++++..+.++..           +++.|+.+|+++       ++++.++...+
T Consensus       835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~-----------e~~~l~~~l~~e~~~~~~aee~~~~~~~~k  903 (1930)
T KOG0161|consen  835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLE-----------EKNDLQEQLQAEKENLAEAEELLERLRAEK  903 (1930)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999999           999999999999       67777777766


Q ss_pred             HH--------------hhhhhHHHHHHHHHHHHHHHHHHhcHHHHhhhHHhhhccCCchhhhhhhhhhHHhhHHhhhcch
Q 000822          188 EA--------------FDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSA  253 (1267)
Q Consensus       188 e~--------------lee~~~~l~~~kkk~qe~~~~L~~~~~~~~~~eel~~ee~~~a~~~~qK~lelEk~~~~~~~~a  253 (1267)
                      ..              .++.+..+...++++++.|++|+..+++         .+++     ++| +++|+.        
T Consensus       904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~---------~E~~-----~~k-~~~Ek~--------  960 (1930)
T KOG0161|consen  904 QELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEE---------LELT-----LQK-LELEKN--------  960 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-----HHH-HHHHHH--------
Confidence            22              2888999999999999999999999999         8888     999 999999        


Q ss_pred             HHHHHHHHhHHHHHhhhhHhhhhhHh----HHHHHHhhhhhhhHHHHH-hccch------hhHHHHHHHhhhHHHhhhhh
Q 000822          254 KEVEGQMASLQEELKGLNEKISEKEK----VEEELKRSNTEISAIQEE-LGLSK------LQLLDLEQRFSSKEALITNL  322 (1267)
Q Consensus       254 ~~~e~~~~~l~ee~~~~~d~~~~~~k----~ee~~~~~~~~l~~~ee~-~~l~K------s~l~dLE~rl~~ee~lrKe~  322 (1267)
                       ++++++++|+++|.++++.++++.|    +|+++.++.++|+.++++ ++|+|      ++|+||+.+|.++.+    .
T Consensus       961 -~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~----~ 1035 (1930)
T KOG0161|consen  961 -AAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKR----I 1035 (1930)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence             9999999999999999999999999    999999999999999999 99999      999999999999999    6


Q ss_pred             HHHHHHHHH----hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822          323 TQELDLIKA----SESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDK  398 (1267)
Q Consensus       323 ~~ELk~lK~----s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~  398 (1267)
                      +.++++.++    .+..+++.+..+.....+|..++..++.++..++.+++++...+..+...|.++.+.+.++.++++.
T Consensus      1036 r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~ 1115 (1930)
T KOG0161|consen 1036 RMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEA 1115 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666665555    7888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhh---hhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHH
Q 000822          399 VSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE---NFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAAT  475 (1267)
Q Consensus       399 lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~---e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~  475 (1267)
                      .+..+..+++.+.||...+..+   ..+|++.++++..   ..+|++.          |+..+++++++.+..|++.+++
T Consensus      1116 er~~r~K~ek~r~dL~~ele~l---~~~Lee~~~~t~~q~e~~~k~e~----------e~~~l~~~leee~~~~e~~~~~ 1182 (1930)
T KOG0161|consen 1116 ERASRAKAERQRRDLSEELEEL---KEELEEQGGTTAAQLELNKKREA----------EVQKLRRDLEEETLDHEAQIEE 1182 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHH
Confidence            9999999999999999555555   5555555555544   6799999          9999999999999999999999


Q ss_pred             hccch----HHHHHHHHH---hhHHHHHHHHHH-----------hhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 000822          476 ASQRN----LELEDIIRA---SNEAAEEAKSQL-----------RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVR  537 (1267)
Q Consensus       476 ~~qk~----~EL~~qi~~---~~~~~Ek~k~~l-----------~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~  537 (1267)
                      +|++|    .+|.+|+++   .|+.+++.|+.+           ..+...+.+.+..++.++.++++++.+++++.+.+.
T Consensus      1183 lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~ 1262 (1930)
T KOG0161|consen 1183 LRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRN 1262 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999    899999999   899999999998           667788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHhh-H
Q 000822          538 EFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILN--------------QSNTRSSELEEELRITKERSAE-D  602 (1267)
Q Consensus       538 eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk--------------~LqsRireLEEele~L~EeLeE-~  602 (1267)
                      ++..+.+++..++..+.+.+++....++.+......+++++.              .+...++.+..+++.+++++++ .
T Consensus      1263 ~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~ 1342 (1930)
T KOG0161|consen 1263 DLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQ 1342 (1930)
T ss_pred             HHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888              7788999999999999999999 7


Q ss_pred             HHHhhhhhhhhHHHHHhHHhhhhhhhhhhhh-HHHHHHH------------------------HHHHHHHHH-HHH----
Q 000822          603 EDRANMSHQRSIELEDLFQTSHSKLEGTGKR-VNELELL------------------------LEAEKYRIQ-ELE----  652 (1267)
Q Consensus       603 E~rak~~rqrs~eLeell~~~k~kLEeae~~-leelEe~------------------------LEk~K~Rlq-ELE----  652 (1267)
                      +++.+..++.+....+ +..|+.++++.... ++++++.                        ++..+.+++ +++    
T Consensus      1343 e~~~~l~r~lsk~~~e-~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~ 1421 (1930)
T KOG0161|consen 1343 EAKNELERKLSKANAE-LAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQL 1421 (1930)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            8888888887777766 77888777654433 3444442                        666666644 222    


Q ss_pred             ------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---------------------H
Q 000822          653 ------EQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKE---------------------R  705 (1267)
Q Consensus       653 ------eqis~LEKK~k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~---------------------r  705 (1267)
                            ..++.++++++.|+..+++|+.....+..+++....+.+..++.+......+                     .
T Consensus      1422 d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~ 1501 (1930)
T KOG0161|consen 1422 DLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIE 1501 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  4588999999999999999999999999999999988888777443333332                     2


Q ss_pred             HHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHH
Q 000822          706 ELTESLNAA-------ADEKRKLQDTSNGYNEKLAEAENLLE-----LLRNDLNMTQERLESIEKDLKAAGLRETDVMEK  773 (1267)
Q Consensus       706 eL~eqleev-------ek~k~~LE~EieElkeqLeElE~~Le-----~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k  773 (1267)
                      ++..+++++       +..++.++.++.+++.+|.++++.++     .+|.++++.+.+.+ ++++|+.+   +++++.+
T Consensus      1502 dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e-~er~l~ek---~Ee~E~~ 1577 (1930)
T KOG0161|consen 1502 DLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSE-IERRLQEK---DEEIEEL 1577 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHhh---hHHHHHH
Confidence            444454444       67789999999999999999999876     88999999999999 99999999   9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHhhHhhHHHHHH---HHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000822          774 LKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAE  850 (1267)
Q Consensus       774 ~k~~~~ql~~~~~~LE~e~~~~~e~~~~~e~~~kk~E~~Lqe---ale~~~~~~sEa~~l~e~LKKLE~qikele~ql~e  850 (1267)
                      +++|+++|++++++|+++++.++++.    +.+||||+|+++   +++++|+..+++.   +++++++.++++|++++++
T Consensus      1578 rk~~~~~i~~~q~~Le~E~r~k~e~~----r~KKkle~di~elE~~ld~ank~~~d~~---K~lkk~q~~~k~lq~~~e~ 1650 (1930)
T KOG0161|consen 1578 RKNLQRQLESLQAELEAETRSKSEAL----RSKKKLEGDINELEIQLDHANKANEDAQ---KQLKKLQAQLKELQRELED 1650 (1930)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHH----hhhhhhhcchHHHHHHHHHHHHhhHHHH---HHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999    999999999999   9999999999999   9999999999999999999


Q ss_pred             HH--------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHhHHHHHHHHH
Q 000822          851 AA--------------GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQE  916 (1267)
Q Consensus       851 a~--------------rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~~~~~~e~~~l~~~~~~Lesei~eLqe  916 (1267)
                      ++              +++..+.++++++...+..+++.++.++.+++++.+.++.+++.|++++..+++|+++|..|++
T Consensus      1651 ~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~ 1730 (1930)
T KOG0161|consen 1651 AQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQS 1730 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Confidence            77              8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhHHHHHHHHhhhhhhhhHHhHHHHHHHHHHHHhhhhhhhHHHhhHHHhHHHHhhhhh
Q 000822          917 LLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIK  996 (1267)
Q Consensus       917 ~Le~a~~ere~aee~l~~~~~~~~eL~e~~~r~~~l~s~~e~~~~~~~~q~~E~~~~~~~~e~e~k~l~ekl~~~E~~~~  996 (1267)
                      .|+++.++.+.+.++.+++..++..+++.+            +.++.++++.+.+++  .|++++++|+.||+++|+.+.
T Consensus      1731 elee~~~~~~~~~Er~kka~~~a~~~~~el------------~~Eq~~~~~le~~k~--~LE~~~kdLq~rL~e~E~~a~ 1796 (1930)
T KOG0161|consen 1731 ELEEEQSELRAAEERAKKAQADAAKLAEEL------------RKEQETSQKLERLKK--SLERQVKDLQLRLDEAEQAAL 1796 (1930)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhHHHH------------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999            999999999999998  999999999999999999887


Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhchhhhhhhhhhHHHHHHHhhhhHHHHhhhHhh
Q 000822          997 SYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATI 1076 (1267)
Q Consensus       997 ~~~~~~~~a~~~a~~~k~e~e~~l~~~k~LE~~i~eLq~~~~~lE~e~~~l~~~~~~~~k~l~k~E~klkel~~ql~~~~ 1076 (1267)
                      .            ++++        .|.+||++|++|+..   ++.|.+..++++    |.++++|++|++|++|     
T Consensus      1797 ~------------~~k~--------~i~~Learir~LE~~---l~~E~~~~~e~~----k~~rk~er~vkEl~~q----- 1844 (1930)
T KOG0161|consen 1797 K------------GGKK--------QIAKLEARIRELESE---LEGEQRRKAEAI----KGLRKKERRVKELQFQ----- 1844 (1930)
T ss_pred             h------------ccHH--------HHHHHHHHHHHHHHH---HhHhhhhhHHHh----HHHHHHHHHHHHHHHH-----
Confidence            7            8888        899999999999999   888889999777    9999999999999999     


Q ss_pred             hhhhHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 000822         1077 VEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSE 1156 (1267)
Q Consensus      1077 ~e~~~~~K~~~~~~~~~kEl~~q~~~~~k~lk~q~ee~eee~~~~~~~~r~~q~eL~~~~~~~~~~~~~~~~~~~~~~~e 1156 (1267)
                      ++++.  |    +..++++++++++.+++.||||++++++.+++++.+||++||+|+++.           +++|+|+++
T Consensus      1845 ~eed~--k----~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~a~-----------erad~~e~~ 1907 (1930)
T KOG0161|consen 1845 VEEDK--K----NIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEEAE-----------ERADTAESE 1907 (1930)
T ss_pred             hhhhh--h----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence            88888  7    999999999999999999999999999999999999999999999999           999999999


Q ss_pred             HHHHHHHHHHHH
Q 000822         1157 IESLKAQAAEKF 1168 (1267)
Q Consensus      1157 ~~~lr~~~~~~~ 1168 (1267)
                      |++||++.+...
T Consensus      1908 ~~~lr~k~r~~~ 1919 (1930)
T KOG0161|consen 1908 LNKLRSKLRSTG 1919 (1930)
T ss_pred             HHHHHHHHHhcc
Confidence            999999988643

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PF14915 CCDC144C: CCDC144C protein coiled-coil region	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF14915 CCDC144C: CCDC144C protein coiled-coil region	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]	Back alignment and domain information

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells	Back alignment and domain information

>PF15450 DUF4631: Domain of unknown function (DUF4631)	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>PF06705 SF-assemblin: SF-assemblin/beta giardin	Back alignment and domain information

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins	Back alignment and domain information

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1267
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-23
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-21
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-21
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-19
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	6e-19
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	7e-19
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	8e-19
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	6e-18
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	5e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	6e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	8e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	9e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	6e-16
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-15
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-15
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-15
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	6e-15
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-14
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-13
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	7e-13
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-10
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	5e-10
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-09
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-11
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-11
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-11
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-09
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-09
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-06
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-06
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	1e-04
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-04
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-04
3ghg_C		411	Fibrinogen gamma chain; triple-stranded coiled coi	4e-06
1sjj_A		863	Actinin; 3-helix bundle, calponin homology domain,	7e-06
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	1e-05
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-05
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	6e-05
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	8e-05
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-04
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	6e-04
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	1e-04
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	6e-04
1w1w_A		430	Structural maintenance of chromosome 1; cohesin, c	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score =  105 bits (263), Expect = 5e-23
 Identities = 111/706 (15%), Positives = 219/706 (31%), Gaps = 221/706 (31%)

Query: 88  SSRELLEANEK--VKELEI----ELERAATALKNAEIENARLQDDVLITKEKLEESGKKC 141
             +++L   E   V   +     ++ ++   L   EI      D ++++K+ +  + +  
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEI------DHIIMSKDAVSGTLRLF 68

Query: 142 EELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSR 201
             L   Q++  ++ VE   + N +   +   ++  E ++  +               + R
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKF--LMSPIK-TEQRQPSMMTR---------MYIEQR 116

Query: 202 SRLQELEHKL-QCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEGQM 260
            RL        + +V   + + +L            ++AL    L    NV    ++G +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKL------------RQALL--ELRPAKNVL---IDG-V 158

Query: 261 ASLQEELKG-----LNEKISEKEKVEEE---------LKRSNTEISAIQEELGLSKLQLL 306
                   G     +   +    KV+ +         LK  N+  + ++         L 
Sbjct: 159 L-------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--------MLQ 203

Query: 307 DLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAK---VSELED 363
            L  +         N T   D     + +     + L  LL   K   +     V  L +
Sbjct: 204 KLLYQIDP------NWTSRSDHSSNIKLRIHSIQAELRRLL---KSKPYENCLLV--LLN 252

Query: 364 IKLKLQEEVNARESVEA-------VLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGN 416
                   V   ++  A       +L T+  QV++    L   +    +L+     LT  
Sbjct: 253 --------VQNAKAWNAFNLSCKILLTTRFKQVTDF---LSAATTTHISLDHHSMTLTP- 300

Query: 417 IARMKELCSE-LEEKLRNSDENFCKTDSLLSQALANNAELELKL--KSLEEQHNETGAAA 473
              +K L  + L+          C+   L  + L  N    L +  +S+ +         
Sbjct: 301 -DEVKSLLLKYLD----------CRPQDLPREVLTTNP-RRLSIIAESIRDGLA------ 342

Query: 474 ATAS---QRNLE-LEDIIRASNEAAEEAKSQLRELEPRFIAAEQR-----------SVEL 518
            T       N + L  II +S          L  LEP    AE R           S  +
Sbjct: 343 -TWDNWKHVNCDKLTTIIESS----------LNVLEP----AEYRKMFDRLSVFPPSAHI 387

Query: 519 EQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELIL 578
              L L  +     + +V     KL + S   K+ +E    +     + K K+   E  L
Sbjct: 388 PTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-EYAL 445

Query: 579 NQSNTRSSELEEELRITKERSAEDEDRANMS---------HQRSIELE---DLFQTSH-- 624
           ++S      + +   I K   ++D     +          H ++IE      LF+     
Sbjct: 446 HRS------IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 625 -----SKLEGTGKRVNE----LELLLEAEKYR--IQE----LEEQISKLEK---KCEEAE 666
                 K+       N     L  L + + Y+  I +     E  ++ +     K EE  
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE-- 557

Query: 667 AGSKQYSDKVCELASELEAFQARTSSLEVALQ-----MANDKEREL 707
                   K  +L             L +AL      +  +  +++
Sbjct: 558 ---NLICSKYTDL-------------LRIALMAEDEAIFEEAHKQV 587

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411	Back alignment and structure

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245	Back alignment and structure

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00