Citrus Sinensis ID: 000827

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260-----

MDPEIAKTQEERRRMEQELASLTSLTFDRDLYGGTDRDAYVSSIPVNDEDDANVDSMDSEVARKLASYTAPKSLLNEMPRGGDDDGSNDNLGFKKPGRIIDREDEYRRRRLQRVISPERHDAFAAGEKTPDPSVRTYVEVMREQAHMREREETLKQIAQKKKEEEEAAKAESGSKRRNRWDQSQDEAVPAPAKKAKPEAASSDWDLPDSTPGVSGRWDATPTPGRVSDATPSAGRRNRWDETPTPGRVADSDGTPAGGVTPGATPAGMTWDATPKGLATPTPKRQRSRWDETPATMGSATPMAGATPAAAYTPGVTPVGAVDVATPTPSAINLRGALTPEQYNLMRWEKDIEERNRPLTDEELDAMFPQEGYKILDPPPSYVPIRTPARKLLATPTPLGTPLYQIPEENRGQQFDVPKEAPGGLPFMKPEDYQYFGALLNEDEEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPTLADEQSNVYSRPELMMFV

ccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHcccccccccccccccccccccc

ccHHHHHHHHHHHHHHHHHHHcccccccHHHcccccccccEEEEccccccccccccccccHHHHcccccccHHHHHHHHccccccccccccHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHccccccHHHHcccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHccccccEEEcccccccccccccHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcHHHcccccEHEHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHccHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHEccccccccccccccccccccEEccHEEEEc

MDPEIAKTQEERRRMEQELASLTsltfdrdlyggtdrdayvssipvndeddanvdsmDSEVARKLASYtapksllnemprggdddgsndnlgfkkpgriidrEDEYRRRRLQRVisperhdafaagektpdpsvRTYVEVMREQAHMREREETLKQIAQKKKEEEEAAKAesgskrrnrwdqsqdeavpapakkakpeaassdwdlpdstpgvsgrwdatptpgrvsdatpsagrrnrwdetptpgrvadsdgtpaggvtpgatpagmtwdatpkglatptpkrqrsrwdetpatmgsatpmagatpaaaytpgvtpvgavdvatptpsainlrgaltpeqynLMRWEKDIeernrpltdeeldamfpqegykildpppsyvpirtparkllatptplgtplyqipeenrgqqfdvpkeapgglpfmkpedyQYFGALlnedeeeelspdeQKERKIMKLLLKVkngtppqrKTALRQLTDKArefgagplfnrilpllmqptledQERHLLVKVIDRVLYKLDELVRPYVHKILVVIepllidedyyARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHglndenqkVRTITALSLAALAEAaapygiesfDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVStegveadyirsdilpeFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEdlkdesepYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNslgqrvkpylpqicGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIgmtkmtppikdllprltPILKNRHEKVQENCIDLVGRIAdrgaefvpaREWMRICFELLEMLKAHKKGIRRATVNTFgyiakaigpQDVLATLLNNLKVQERQNRVCTTVAIAIVAetcspftvlpalmneyrvpelnvqngVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYvwpnifetspHVINAVMEAIEGMRVALGAAVVLNYCLqglfhparKVREVYWKIYNSLYIGAQDALVAAyptladeqsnvysrpelmmfv

mdpeiaktQEERRRMEQelasltsltfdrdlyggtdRDAYVssipvndeddanvDSMDSEVARKLASytapksllnemprggdddgsndnlgfkkpgriidredeyrRRRLqrvisperhdafaagektpdpsvrtYVEVMREQAHMREREETLKQIAQKKKEEEeaakaesgskrrnrwdqsqdeavpapakkakpeaassdwdlpdSTPGVsgrwdatptpgrvsdatpsagrrnrwdetptpgrvadsdgtpagGVTPGAtpagmtwdatpkglatptpkrqrsrwdETPATMGSATPMAGATPAAAYTPGVTPVGAVDVAtptpsainlrgaltpeqynLMRWEKDIEERNRPLTDEELDAMFPQEgykildpppsyVPIRTPARKLLATPTPLGTPLYQIPEENRGQQFDVPKEAPGGLPFMKPEDYQYFGALLNEDEEEELSPDEQKERKIMKLLlkvkngtppqrkTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEhglndenqkVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTegveadyirsdilpEFFRNFWVRRMALDRRNYKQLVETTVEiankvgvadivgrivedlkdesepyRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTkmtppikdllPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPTLAdeqsnvysrpelmmfv

MDPEIAKTQEERRRMEQELASLTSLTFDRDLYGGTDRDAYVSSIPVNDEDDANVDSMDSEVARKLASYTAPKSLLNEMPRggdddgsndnlgFKKPGriidredeyrrrrLQRVISPERHDAFAAGEKTPDPSVRTYVEVMREQAHMREREETLkqiaqkkkeeeeaakaeSGSKRRNRWDQSQDeavpapakkakpeaaSSDWDLPDSTPGVSGRWDATPTPGRVSDATPSAGRRNRWDETPTPGRVADSDgtpaggvtpgatpagMTWDATPKGLATPTPKRQRSRWDETPATMGSatpmagatpaaaytpgvtpvGAVDVATPTPSAINLRGALTPEQYNLMRWEKDIEERNRPLTDEELDAMFPQEGYKILDPPPSYVPIRTPARKllatptplgtplYQIPEENRGQQFDVPKEAPGGLPFMKPEDYQYFGALLNedeeeelspdeqkeRKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITalslaalaeaaaPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPTLADEQSNVYSRPELMMFV

************************LTFDRDLYGGT***AY******************************************************************************************************************************************************************************************************************************************************************************YTPGVTPVGAVDVATPTPSAINLRGALTPEQYNLMRWE***********************YKIL*****YVPIR*****LL****************************************QYF************************************************REFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPTLA****************

*DPEIAK*******************FDRDLYGGTDRDAYVSSIPV*********************************************************************************************************************************************************************************************************************************************************************************AVDV************************************DEELDAMFPQEGYKILDPPPS************************************************PEDYQYFGALL****************KIMKLLLKVKN******K**LRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPTLADEQSNVYSRPELMMFV

****************QELASLTSLTFDRDLYGGTDRDAYVSSIPVNDEDDANVDSMDSEVARKLASYTAPKSLLNEMPRGGDDDGSNDNLGFKKPGRIIDREDEYRRRRLQRVISPERHDAFAAGEKTPDPSVRTYVEVMREQAHMREREETLKQI********************************************************SGRWDA*****************NRWDETPTPGRVADSDGTPAGGVTPGATPAGMTWDATPKG*********************SATPMAGATPAAAYTPGVTPVGAVDVATPTPSAINLRGALTPEQYNLMRWEKDIEERNRPLTDEELDAMFPQEGYKILDPPPSYVPIRTPARKLLATPTPLGTPLYQIPEENRGQQFDVPKEAPGGLPFMKPEDYQYFGALLNE***********KERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQ********HTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNN*********ADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPTLADEQSNVYSRPELMMFV

MDPEIAKTQEERRRMEQELASLTSLTFDRDLYGGTDRDAYVSSIPVN************E**R**ASYTAPKSLLNEMPRG*****SNDNLGFKKPGRIIDREDEYRRRRLQRVISPERHDAFAAGEK*****VRTYVEVMREQAHMREREETLKQIAQKKK***************************************************************************************************************************************************AYTPGVTPVGAVDVATPTPSAINLRGALTPEQYNLMRWEKDIEERNRPLTDEELDAMFPQEGYKILDPPPSYVPIRTPARKLLATPTPLGTPLYQIPEENRGQQFDVPKEAPGGLPFMKPEDYQYFGALLNEDEEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPTLADEQSNVYSRPELMMFV

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MDPExxxxxxxxxxxxxxxxxxxxxTFDRDLYGGTDRDAYVSSIPVNDEDDANVDSMDSEVARKLASYTAPKSLLNEMPRGGDDDGSNDNLGFKKPGRIIDREDEYRRRRLQRVISPERHDAFAAGEKTPDPSVRTYVEVMREQAHxxxxxxxxxxxxxxxxxxxxxxxxxSGSKRRNRWDQSQDEAVPAPAKKAKPEAASSDWDLPDSTPGVSGRWDATPTPGRVSDATPSAGRRNRWDETPTPGRVADSDGTPAGGVTPGATPAGMTWDATPKGLATPTPKRQRSRWDETPATMGSATPMAGATPAAAYTPGVTPVGAVDVATPTPSAINLRGALTPEQYNLMRWEKDIEERNRPLTDEELDAMFPQEGYKILDPPPSYVPIRTPARKLLATPTPLGTPLYQIPEENRGQQFDVPKEAPGGLPFMKPEDYQYFGALLNEDEEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPTLADEQSNVYSRPELMMFV

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1265	2.2.26 [Sep-21-2011]
O57683		1307	Splicing factor 3B subuni	N/A	no	0.966	0.934	0.694	0.0
O75533		1304	Splicing factor 3B subuni	yes	no	0.958	0.929	0.699	0.0
Q99NB9		1304	Splicing factor 3B subuni	yes	no	0.958	0.929	0.698	0.0
Q10178		1205	U2 snRNP component prp10	yes	no	0.886	0.931	0.559	0.0
P49955		971	U2 snRNP component HSH155	yes	no	0.667	0.869	0.546	0.0
P54613		602	Serine/threonine-protein	no	no	0.422	0.888	0.223	2e-06
P30153		589	Serine/threonine-protein	no	no	0.417	0.896	0.222	3e-06
P54612		589	Serine/threonine-protein	no	no	0.417	0.896	0.222	3e-06
Q76MZ3		589	Serine/threonine-protein	no	no	0.417	0.896	0.222	3e-06
Q32PI5		589	Serine/threonine-protein	no	no	0.417	0.896	0.222	6e-06

>sp\|O57683\|SF3B1_XENLA Splicing factor 3B subunit 1 OS=Xenopus laevis GN=sf3b1 PE=2 SV=1	Back alignment and function desciption

 Score = 1744 bits (4517), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 903/1301 (69%), Positives = 1041/1301 (80%), Gaps = 79/1301 (6%)

Query: 16   EQELASLTSLT-FDRDLYGGTDR--DAYVSSIPVNDEDDANVDSMDSEVARKLASYTAPK 72
            E+E   L S   FD+++YGG+D     YV+SI  N+++D + D   +   +K   Y AP 
Sbjct: 27   EEEGVGLDSTGYFDQEIYGGSDSRFTGYVTSIAANEQEDDDDDVSSATFEQKKPGYHAPV 86

Query: 73   SLLNEMPRGGDDDGSNDNLGFKKPGRIIDREDEYRRRRLQRVISPERHDAFAAGEKTPDP 132
            +LLN++P+  +     D     +P +I +REDEY+++R + +ISPER D FA G KTPDP
Sbjct: 87   ALLNDIPQSTE---QYDPFAEHRPQKIANREDEYKQQRRKMIISPERLDPFADGGKTPDP 143

Query: 133  SV--RTYVEVMREQAHMREREETLKQIAQKKKE--------EEEAAKAESGSKRRNRWDQ 182
             +  RT+ +VM+EQ   +E  E  +QIA+K K            ++ A+  SKR+ RWDQ
Sbjct: 144  KLNARTFKDVMQEQYLTKEEREIRQQIAEKAKSGDLKVVNGSSASSAAQPPSKRKRRWDQ 203

Query: 183  SQDEAVPAPAKKAKPEAASSDWDLPDSTPG---VSGRWDATPTPGRV-SDATPSAGRRNR 238
            + D+   +  KK       S WD  + TPG    S RWD TP  GR   + TP A   ++
Sbjct: 204  TGDQTPGSTPKKL------SSWDQAEVTPGHTPSSLRWDETP--GRAKGNETPGATPGSK 255

Query: 239  -WDETP--TPGRVAD-SDGTPAGGVTPGATPAGMT-----WDATPK----------GLA- 278
             WD TP  TP  VA    G   G VTPG + A  +     WD TPK          G A 
Sbjct: 256  IWDPTPSHTPAGVATPGRGDTPGHVTPGHSGATSSARKNRWDETPKTERDTPGHGSGWAE 315

Query: 279  -------------TPTP--KRQRSRWDETPATMGSATPMAGATPAAAYTPGVTPVG--AV 321
                         TPTP   +++SRWDETPA+      M G+TP    TPG TP+G  A+
Sbjct: 316  TPRTDRGGDSIGETPTPGASKRKSRWDETPASQ-----MGGSTPV--LTPGKTPIGTPAM 368

Query: 322  DVATPTPSAINLRGALTPEQYNLMRWEKDIEERNRPLTDEELDAMFPQEGYKILDPPPSY 381
            ++ATPTP  I    ++TPEQ    RWE++I+ERNRPL+DEELDAMFP EGYK+L PP  Y
Sbjct: 369  NMATPTPGHIM---SMTPEQLQAWRWEREIDERNRPLSDEELDAMFP-EGYKVLPPPAGY 424

Query: 382  VPIRTPARKLLATPTPLGTPL-YQIPEENRGQQFDVPKEAPGGLPFMKPEDYQYFGALLN 440
            VPIRTPARKL ATPTPLG    + +P E+R  +  V  +  G LPF+KP+D QYF  LL 
Sbjct: 425  VPIRTPARKLTATPTPLGGLTGFHMPTEDRSMK-SVSDQPSGNLPFLKPDDIQYFDKLLV 483

Query: 441  EDEEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLM 500
            + +E  LSP+EQKERKIMKLLLK+KNGTPP RK ALRQ+TDKAREFGAGPLFN+ILPLLM
Sbjct: 484  DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM 543

Query: 501  QPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL 560
             PTLEDQERHLLVKVIDR+LYKLD+LVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
Sbjct: 544  SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL 603

Query: 561  SKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQA 620
            +KAAGLATMI+ MRPDIDN+DEYVRNTTARAF+VVASALGIP+LLPFLKAVC+SKKSWQA
Sbjct: 604  AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA 663

Query: 621  RHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYG 680
            RHTGIKIVQQIAIL+GCA+LPHLRSLVEIIEHGL DE QKVRTI+AL++AALAEAA PYG
Sbjct: 664  RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG 723

Query: 681  IESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSP 740
            IESFDSVLKPLWKGIR HRGK LAAFLKAIG++IPLMDA YA+YYT+EVM ILIREFQSP
Sbjct: 724  IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP 783

Query: 741  DEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEI 800
            DEEMKKIVLKVVKQC  T+GVEA+YI+++ILP FF++FW  RMALDRRNY+QLV+TTVE+
Sbjct: 784  DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL 843

Query: 801  ANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAF 860
            ANKVG A+I+ RIV+DLKDE+E YR+MVMETIEK++ NLGA+DID +LEE LIDGILYAF
Sbjct: 844  ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF 903

Query: 861  QEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIA 920
            QEQT++D+ VMLNGFG VVN+LG+RVKPYLPQICGT+ WRLNNKSAKVRQQAADLISR A
Sbjct: 904  QEQTTEDS-VMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTA 962

Query: 921  VVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPR 980
            VVMK C EE+LMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM KMTPPIKDLLPR
Sbjct: 963  VVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPR 1022

Query: 981  LTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVN 1040
            LTPILKNRHEKVQENCIDLVGRIADRGAE+V AREWMRICFELLE+LKAHKK IRRATVN
Sbjct: 1023 LTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVN 1082

Query: 1041 TFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVP 1100
            TFGYIAKAIGP DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVP
Sbjct: 1083 TFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVP 1142

Query: 1101 ELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGV 1160
            ELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA++ V+HM+LGV
Sbjct: 1143 ELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGV 1202

Query: 1161 AGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPAR 1220
             G GCED+L HLLNYVWPN+FETSPHVI AVM A+EG+RVA+G   ++ YCLQGLFHPAR
Sbjct: 1203 YGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMVQYCLQGLFHPAR 1262

Query: 1221 KVREVYWKIYNSLYIGAQDALVAAYPTLADEQSNVYSRPEL 1261
            KVR+VYWKIYNS+YIG+QDAL+A YP + +++ N Y R EL
Sbjct: 1263 KVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYEL 1303

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.
Xenopus laevis (taxid: 8355)

>sp\|O75533\|SF3B1_HUMAN Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	Back alignment and function description

>sp\|Q99NB9\|SF3B1_MOUSE Splicing factor 3B subunit 1 OS=Mus musculus GN=Sf3b1 PE=1 SV=1	Back alignment and function description

>sp\|Q10178\|SF3B1_SCHPO U2 snRNP component prp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp10 PE=1 SV=3	Back alignment and function description

>sp\|P49955\|SF3B1_YEAST U2 snRNP component HSH155 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HSH155 PE=1 SV=1	Back alignment and function description

>sp\|P54613\|2AAB_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (Fragment) OS=Sus scrofa GN=PPP2R1B PE=2 SV=1	Back alignment and function description

>sp\|P30153\|2AAA_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4	Back alignment and function description

>sp\|P54612\|2AAA_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Sus scrofa GN=PPP2R1A PE=2 SV=2	Back alignment and function description

>sp\|Q76MZ3\|2AAA_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Mus musculus GN=Ppp2r1a PE=1 SV=3	Back alignment and function description

>sp\|Q32PI5\|2AAA_BOVIN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Bos taurus GN=PPP2R1A PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1265
449438767		1262	PREDICTED: splicing factor 3B subunit 1-	0.987	0.989	0.909	0.0
225440262		1271	PREDICTED: splicing factor 3B subunit 1-	0.991	0.986	0.910	0.0
224141215		1267	predicted protein [Populus trichocarpa]	0.992	0.991	0.887	0.0
255569724		1233	Splicing factor 3B subunit, putative [Ri	0.956	0.981	0.882	0.0
297794017		1264	hypothetical protein ARALYDRAFT_496629 [	0.988	0.989	0.865	0.0
15237657		1269	putative splicing factor [Arabidopsis th	0.989	0.986	0.859	0.0
168002603		1292	predicted protein [Physcomitrella patens	0.988	0.967	0.837	0.0
357445893		1378	Splicing factor 3B subunit [Medicago tru	0.983	0.902	0.867	0.0
356546579		1172	PREDICTED: splicing factor 3B subunit 1-	0.921	0.994	0.923	0.0
326523121		1283	predicted protein [Hordeum vulgare subsp	0.989	0.975	0.840	0.0

>gi\|449438767\|ref\|XP_004137159.1\| PREDICTED: splicing factor 3B subunit 1-like [Cucumis sativus] gi\|449523197\|ref\|XP_004168610.1\| PREDICTED: splicing factor 3B subunit 1-like [Cucumis sativus]	Back alignment and taxonomy information

 Score = 2300 bits (5961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1162/1278 (90%), Positives = 1204/1278 (94%), Gaps = 29/1278 (2%)

Query: 1    MDPEIAKTQEERRRMEQELASLTSLTFDRDLYGGTDRDAYVSSIPVNDEDDANVDSMDSE 60
            MD EIAKTQEERR+MEQ+LASL S+TFD DLYGG D+  YV+SIPVN EDD N++S  + 
Sbjct: 1    MDLEIAKTQEERRKMEQQLASLNSVTFDTDLYGGNDKAGYVTSIPVN-EDDENLESQVNV 59

Query: 61   VARKLASYTAPKSLLNEMPRGGDDDGSNDNLGFKKPGRIIDREDEYRRRRLQRVISPERH 120
            V RKLASYTAPKSLL EMPRG D+D   ++LG+KKP RIIDRED+YR+RRL RVISPERH
Sbjct: 60   VGRKLASYTAPKSLLKEMPRGVDED---EDLGYKKPQRIIDREDDYRKRRLNRVISPERH 116

Query: 121  DAFAAGEKTPDPSVRTYVEVMREQAHMREREETLKQIAQK-----------KKEEEEAAK 169
            DAFAAGEKTPDPSVRTY EVMRE+A  REREETL+ IA+K           +K +E  A 
Sbjct: 117  DAFAAGEKTPDPSVRTYAEVMREEALKREREETLRAIAKKKEEEEAAKASGEKPKEPLAS 176

Query: 170  AESGSKRRNRWDQSQDEAVPAPAKKAKPEAASSDWDLPDSTPGVSGRWDATPTPGRVSDA 229
            A +  KRRNRWDQSQD+     AKKAK    +SDWDLPD+TPG   RWDATP  GRV DA
Sbjct: 177  AAAPQKRRNRWDQSQDDG---GAKKAK----TSDWDLPDTTPG---RWDATP--GRVGDA 224

Query: 230  TPSAGRRNRWDETPTPGRVADSDGTPAGGVTPGATPAGMTWDATPK--GLATPTPKRQRS 287
            TP  GRRNRWDETPTPGR+AD D TPAGGVTPGATPAGMTWDATPK  G+ATPTPKRQRS
Sbjct: 225  TPGVGRRNRWDETPTPGRLADLDATPAGGVTPGATPAGMTWDATPKLAGMATPTPKRQRS 284

Query: 288  RWDETPATMGSATPMAGATPAAAYTPGVTPVGAVDVATPTPSAINLRGALTPEQYNLMRW 347
            RWDETPATMGSATPM GATPAAA+TPGVTPVG V++ATPTP AINLRG +TPEQYNLMRW
Sbjct: 285  RWDETPATMGSATPMPGATPAAAFTPGVTPVGGVELATPTPGAINLRGPMTPEQYNLMRW 344

Query: 348  EKDIEERNRPLTDEELDAMFPQEGYKILDPPPSYVPIRTPARKLLATPTPLGTPLYQIPE 407
            E+DIEERNRPLTDEELDAMFPQEGYKILDPP SYVPIRTPARKLLATPTP+GTPLY IPE
Sbjct: 345  ERDIEERNRPLTDEELDAMFPQEGYKILDPPASYVPIRTPARKLLATPTPMGTPLYAIPE 404

Query: 408  ENRGQQFDVPKEAPGGLPFMKPEDYQYFGALLNEDEEEELSPDEQKERKIMKLLLKVKNG 467
            ENRGQQFDVPKEAPGGLPFMKPEDYQYFGALLNE++EEELSP+EQKERKIMKLLLKVKNG
Sbjct: 405  ENRGQQFDVPKEAPGGLPFMKPEDYQYFGALLNEEDEEELSPEEQKERKIMKLLLKVKNG 464

Query: 468  TPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELV 527
            TPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELV
Sbjct: 465  TPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELV 524

Query: 528  RPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNT 587
            RPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNT
Sbjct: 525  RPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNT 584

Query: 588  TARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLV 647
            TARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLV
Sbjct: 585  TARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLV 644

Query: 648  EIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFL 707
            EIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFL
Sbjct: 645  EIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFL 704

Query: 708  KAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIR 767
            KAIGFIIPLMDALYA YYTKEVM+ILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIR
Sbjct: 705  KAIGFIIPLMDALYACYYTKEVMYILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIR 764

Query: 768  SDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRM 827
            +DILPEFFRNFWVRRMALDRRNYKQLV+TTVEIANKVGVADIVGR+VEDLKDESEPYRRM
Sbjct: 765  NDILPEFFRNFWVRRMALDRRNYKQLVDTTVEIANKVGVADIVGRVVEDLKDESEPYRRM 824

Query: 828  VMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVK 887
            VMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVK
Sbjct: 825  VMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVK 884

Query: 888  PYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEY 947
            PYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQC EEQLMGHLGVVLYEYLGEEY
Sbjct: 885  PYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEY 944

Query: 948  PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG 1007
            PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG
Sbjct: 945  PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG 1004

Query: 1008 AEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQER 1067
            AEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQER
Sbjct: 1005 AEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQER 1064

Query: 1068 QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYI 1127
            QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYI
Sbjct: 1065 QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYI 1124

Query: 1128 YAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHV 1187
            YAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHV
Sbjct: 1125 YAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHV 1184

Query: 1188 INAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPT 1247
            INAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVA+YP 
Sbjct: 1185 INAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVASYPA 1244

Query: 1248 LADEQSNVYSRPELMMFV 1265
            L D ++NVYSRPEL MF+
Sbjct: 1245 LEDGENNVYSRPELAMFI 1262

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225440262\|ref\|XP_002284022.1\| PREDICTED: splicing factor 3B subunit 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224141215\|ref\|XP_002323970.1\| predicted protein [Populus trichocarpa] gi\|222866972\|gb\|EEF04103.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255569724\|ref\|XP_002525826.1\| Splicing factor 3B subunit, putative [Ricinus communis] gi\|223534831\|gb\|EEF36520.1\| Splicing factor 3B subunit, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297794017\|ref\|XP_002864893.1\| hypothetical protein ARALYDRAFT_496629 [Arabidopsis lyrata subsp. lyrata] gi\|297310728\|gb\|EFH41152.1\| hypothetical protein ARALYDRAFT_496629 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15237657\|ref\|NP_201232.1\| putative splicing factor [Arabidopsis thaliana] gi\|9759403\|dbj\|BAB09858.1\| nuclear protein-like [Arabidopsis thaliana] gi\|332010481\|gb\|AED97864.1\| putative splicing factor [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|168002603\|ref\|XP_001754003.1\| predicted protein [Physcomitrella patens subsp. patens] gi\|162694979\|gb\|EDQ81325.1\| predicted protein [Physcomitrella patens subsp. patens]	Back alignment and taxonomy information

>gi\|357445893\|ref\|XP_003593224.1\| Splicing factor 3B subunit [Medicago truncatula] gi\|355482272\|gb\|AES63475.1\| Splicing factor 3B subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356546579\|ref\|XP_003541702.1\| PREDICTED: splicing factor 3B subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|326523121\|dbj\|BAJ88601.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1265
TAIR\|locus:2173333		1269	AT5G64270 [Arabidopsis thalian	0.989	0.986	0.799	0.0
UNIPROTKB\|E1C2C3		1301	SF3B1 "Uncharacterized protein	0.843	0.820	0.714	0.0
ZFIN\|ZDB-GENE-040827-3		1315	sf3b1 "splicing factor 3b, sub	0.850	0.818	0.710	0.0
UNIPROTKB\|F1MX61		1304	SF3B1 "Uncharacterized protein	0.843	0.818	0.713	0.0
UNIPROTKB\|O75533		1304	SF3B1 "Splicing factor 3B subu	0.843	0.818	0.713	0.0
UNIPROTKB\|G3V7T6		1304	Sf3b1 "Splicing factor 3b, sub	0.843	0.818	0.713	0.0
MGI\|MGI:1932339		1304	Sf3b1 "splicing factor 3b, sub	0.843	0.818	0.712	0.0
UNIPROTKB\|F1SMZ9		1303	SF3B1 "Uncharacterized protein	0.843	0.818	0.712	0.0
FB\|FBgn0031266		1340	CG2807 [Drosophila melanogaste	0.816	0.770	0.721	0.0
WB\|WBGene00011605		1322	T08A11.2 [Caenorhabditis elega	0.821	0.785	0.663	0.0

TAIR\|locus:2173333 AT5G64270 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 5156 (1820.1 bits), Expect = 0., P = 0.
 Identities = 1023/1279 (79%), Positives = 1079/1279 (84%)

Query:     1 MDPEIAKTQEERRRMEQELASLTSLTFDRDLYGGTDRDAYVSSIPVNDEDDANVDSMDSE 60
             +DPEIAKTQEERR+ME +LASLTSLTFDRDLYGG DR +Y +SI  N+EDDAN+D+  S 
Sbjct:     4 LDPEIAKTQEERRKMEADLASLTSLTFDRDLYGGNDRASYSTSIAPNEEDDANLDTTGSL 63

Query:    61 VARKLASYTAPKSLLNEMPRXXXXXXXXXXXXFKKPGXXXXXXXXXXXXXLQRVISPERH 120
             VA++LASYTAP+S+LN++ R            FK                L RV+SP+R 
Sbjct:    64 VAQRLASYTAPRSILNDVARPHNEDDDVG---FKPRQSIAEREGEYRNRRLNRVLSPDRV 120

Query:   121 DAFAAGEKTPDPSVRTYVEVMREQAHMREREETLXXXXXXXXXXXXXXX----------- 169
             DAFA G+KTPD SVRTY + MRE A  RE+EET+                          
Sbjct:   121 DAFAMGDKTPDASVRTYTDHMRETALQREKEETMRLIAKKKKEEEEAAAKHQKDSAPPPP 180

Query:   170 ---XXSGSKRRNRWDQSQDXXXXXXXXXXXXXXXSSDWDLPDSTPGVSGRWDATPTPGRV 226
                  S SKRR+RWD  ++               SSDWDLPD+ PG+ GRWDA PTPGRV
Sbjct:   181 ASSSSSSSKRRHRWDLPEEDGAAAKKAKAA----SSDWDLPDAAPGI-GRWDA-PTPGRV 234

Query:   227 SDATPSAGRRNRWDETPTPGRVADSDXXXXXXXXXXXXXXXMTWDATPKGLATPTPKRQR 286
             SDATPSAGRRNRWDETPTPGRV DSD               +TWD    GLATPTPKRQR
Sbjct:   235 SDATPSAGRRNRWDETPTPGRVTDSDATPGGGVTPGATPSGVTWD----GLATPTPKRQR 290

Query:   287 SRWDETPATMGSXXXXXXXXXXXXXXXXXXXXGAVDVATPTPSAINLRGALTPEQYNLMR 346
             SRWDETPATMGS                    G +D+ATPTP  +  RG +TPEQ N+ R
Sbjct:   291 SRWDETPATMGSATPMGGVTPGAAYTPGVTPIGGIDMATPTPGQLIFRGPMTPEQLNMQR 350

Query:   347 WEKDIEERNRPLTDEELDAMFPQEGYKILDPPPSYVPIRTPARKXXXXXXXXXXXXYQIP 406
             WEKDIEERNRPL+DEELDAMFP++GYK+LDPP +YVPIRTPARK            Y IP
Sbjct:   351 WEKDIEERNRPLSDEELDAMFPKDGYKVLDPPATYVPIRTPARKLQQTPTPMATPGYVIP 410

Query:   407 EENRGQQFDVPKEAPGGLPFMKPEDYQYFGALLNXXXXXXXXXXXXXXRKIMKLLLKVKN 466
             EENRGQQ+DVP E PGGLPFMKPEDYQYFG+LLN              RKIMKLLLKVKN
Sbjct:   411 EENRGQQYDVPPEVPGGLPFMKPEDYQYFGSLLNEENEEELSPEEQKERKIMKLLLKVKN 470

Query:   467 GTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDEL 526
             GTPPQRKTALRQLTDKARE GAGPLFN+ILPLLMQPTLEDQERHLLVKVIDR+LYKLDE+
Sbjct:   471 GTPPQRKTALRQLTDKARELGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRILYKLDEM 530

Query:   527 VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRN 586
             VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLA+MIAAMRPDIDNIDEYVRN
Sbjct:   531 VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLASMIAAMRPDIDNIDEYVRN 590

Query:   587 TTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSL 646
             TTARAFSVVASALGIPALLPFLKAVCQSK+SWQARHTGIKIVQQIAILIGCAVLPHLRSL
Sbjct:   591 TTARAFSVVASALGIPALLPFLKAVCQSKRSWQARHTGIKIVQQIAILIGCAVLPHLRSL 650

Query:   647 VEIIEHGLNDENQKVRTITXXXXXXXXXXXXPYGIESFDSVLKPLWKGIRSHRGKVLAAF 706
             VEIIEHGL+DENQKVRTIT            PYGIESFDSVLKPLWKGIRSHRGKVLAAF
Sbjct:   651 VEIIEHGLSDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAF 710

Query:   707 LKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYI 766
             LKAIGFIIPLMDA+YASYYTKEVM ILIREFQSPDEEMKKIVLKVVKQCVSTEGVE +YI
Sbjct:   711 LKAIGFIIPLMDAIYASYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEPEYI 770

Query:   767 RSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRR 826
             RSDILPEFFRNFW R+MAL+RRNYKQLVETTVE+ANKVGVADIVGR+VEDLKDESE YRR
Sbjct:   771 RSDILPEFFRNFWTRKMALERRNYKQLVETTVEVANKVGVADIVGRVVEDLKDESEQYRR 830

Query:   827 MVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRV 886
             MVMETI+KVV NLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVN+LGQRV
Sbjct:   831 MVMETIDKVVTNLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRV 890

Query:   887 KPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEE 946
             KPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQC EEQLMGHLGVVLYEYLGEE
Sbjct:   891 KPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCGEEQLMGHLGVVLYEYLGEE 950

Query:   947 YPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR 1006
             YPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR
Sbjct:   951 YPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR 1010

Query:  1007 GAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQE 1066
             GAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQE
Sbjct:  1011 GAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQE 1070

Query:  1067 RQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDY 1126
             RQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDY
Sbjct:  1071 RQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDY 1130

Query:  1127 IYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPH 1186
             IYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLN++WPNIFETSPH
Sbjct:  1131 IYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNFIWPNIFETSPH 1190

Query:  1187 VINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYP 1246
             VINAVMEAIEGMRVALGAAV+LNYCLQGLFHPARKVREVYWKIYNSLYIGAQD LVAAYP
Sbjct:  1191 VINAVMEAIEGMRVALGAAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDTLVAAYP 1250

Query:  1247 TLADEQSNVYSRPELMMFV 1265
              L DEQ+NVYSRPEL MFV
Sbjct:  1251 VLEDEQNNVYSRPELTMFV 1269

GO:0005634 "nucleus" evidence=ISM

GO:0006397 "mRNA processing" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

UNIPROTKB\|E1C2C3 SF3B1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040827-3 sf3b1 "splicing factor 3b, subunit 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MX61 SF3B1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|O75533 SF3B1 "Splicing factor 3B subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V7T6 Sf3b1 "Splicing factor 3b, subunit 1, isoform CRA_b" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1932339 Sf3b1 "splicing factor 3b, subunit 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SMZ9 SF3B1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

FB\|FBgn0031266 CG2807 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00011605 T08A11.2 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49955	SF3B1_YEAST	No assigned EC number	0.5467	0.6671	0.8692	yes	no
Q99NB9	SF3B1_MOUSE	No assigned EC number	0.6988	0.9581	0.9294	yes	no
O75533	SF3B1_HUMAN	No assigned EC number	0.6996	0.9581	0.9294	yes	no
Q10178	SF3B1_SCHPO	No assigned EC number	0.5594	0.8869	0.9311	yes	no
O57683	SF3B1_XENLA	No assigned EC number	0.6940	0.9660	0.9349	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1265
COG5181		975	COG5181, HSH155, U2 snRNP spliceosome subunit [RNA	0.0
pfam08920		142	pfam08920, SF3b1, Splicing factor 3B subunit 1	9e-50
PHA03378		991	PHA03378, PHA03378, EBNA-3B; Provisional	7e-07
pfam12815		112	pfam12815, CTD, Spt5 C-terminal nonapeptide repeat	1e-05
smart01104		121	smart01104, CTD, Spt5 C-terminal nonapeptide repea	3e-05
pfam12815		112	pfam12815, CTD, Spt5 C-terminal nonapeptide repeat	1e-04
smart01104		121	smart01104, CTD, Spt5 C-terminal nonapeptide repea	1e-04
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-04
PRK12323		700	PRK12323, PRK12323, DNA polymerase III subunits ga	8e-04
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
TIGR02680		1353	TIGR02680, TIGR02680, TIGR02680 family protein	0.004

>gnl\|CDD\|227508 COG5181, HSH155, U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

 Score = 1167 bits (3019), Expect = 0.0
 Identities = 445/865 (51%), Positives = 563/865 (65%), Gaps = 14/865 (1%)

Query: 403  YQIPEENRGQQFDVPKEAP---------GGLPFMKPEDYQYFGALLNEDEEEELSPDEQK 453
            Y+ P+E       +P               L F K ED +YF     +     L   E  
Sbjct: 110  YEPPQE---INMCLPARGYKALTDFHGYADLGFFKVEDLKYFADDEKDFFMPLLEDREGD 166

Query: 454  ERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLV 513
            ER + +LLLKVKNG    R   LR LTDKA  FGA  +FN++LP+LM   LEDQERHL+V
Sbjct: 167  ERDVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVV 226

Query: 514  KVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAM 573
            K+IDR+LY LD+L  PYVHKILVV+ PLLIDED   R  GREII NL    GL   +++M
Sbjct: 227  KLIDRLLYGLDDLKVPYVHKILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSM 286

Query: 574  RPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAI 633
            RPDI + DEYVRN T RA  VVA ALG+  LLPFL+A+C S+KSW+ARHTGI+I QQI  
Sbjct: 287  RPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICE 346

Query: 634  LIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWK 693
            L+G + L HL  L++ I   L D ++ VR  TA +L+ LAE   PYGIE FD VL PLW+
Sbjct: 347  LLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWE 406

Query: 694  GIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVK 753
            G   HRGK L +FLKA+GFIIPLM   YA + T+E M I+ REF+SPDEEMKK +L V +
Sbjct: 407  GASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVER 466

Query: 754  QCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRI 813
             C          +R  + PEFF  FW RR A DRR+YKQ+V TTV +A   G   +  +I
Sbjct: 467  ICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKI 526

Query: 814  VEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLN 873
            +E   DE EPYR+M    + ++ + LG    D RLEE L D IL AFQEQ +    ++L 
Sbjct: 527  LEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVG-LILP 585

Query: 874  GFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMG 933
             F  V+ SL  R KP+L  I  TI   L +K   VR +AADL+  +A V+K C E + + 
Sbjct: 586  CFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELA 645

Query: 934  HLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQ 993
             LG +LYE LGE+YPEVLGSIL A+ +I +V     M PPI  +LP LTPIL+N+H+KV 
Sbjct: 646  KLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVV 705

Query: 994  ENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQD 1053
             N I LVG I     E++  REWMRICFEL++ LK+  K IRR    TFG I++AIGPQD
Sbjct: 706  ANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQD 765

Query: 1054 VLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLS 1113
            VL  LLNNLKVQERQ RVCT+VAI+IVAE C PF+VLP LM++Y  PE NVQNGVLK++ 
Sbjct: 766  VLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMC 825

Query: 1114 FLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLL 1173
            F+FEYIG+   DY+Y++TPLLEDAL DRD VHRQTA + ++H+ L   G G EDA +HLL
Sbjct: 826  FMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLL 885

Query: 1174 NYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSL 1233
            N +WPNI E SPHVI +  E +E     LG+  ++ Y  QGLFHP+  VR+ YW +YN +
Sbjct: 886  NLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIM 945

Query: 1234 YIGAQDALVAAYPTLADEQSNVYSR 1258
            Y+   DA+V  YP + ++ +   +R
Sbjct: 946  YVFDSDAMVPCYP-VEEDLNPELAR 969

Length = 975

>gnl\|CDD\|220070 pfam08920, SF3b1, Splicing factor 3B subunit 1	Back alignment and domain information

>gnl\|CDD\|223065 PHA03378, PHA03378, EBNA-3B; Provisional	Back alignment and domain information

>gnl\|CDD\|221787 pfam12815, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4	Back alignment and domain information

>gnl\|CDD\|215026 smart01104, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4	Back alignment and domain information

>gnl\|CDD\|221787 pfam12815, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4	Back alignment and domain information

>gnl\|CDD\|215026 smart01104, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4	Back alignment and domain information

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

>gnl\|CDD\|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|233973 TIGR02680, TIGR02680, TIGR02680 family protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1265
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	100.0
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	100.0
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	100.0
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG1824		1233	consensus TATA-binding protein-interacting protein	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	100.0
PF08920		144	SF3b1: Splicing factor 3B subunit 1; InterPro: IPR	99.96
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.91
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.91
KOG1824		1233	consensus TATA-binding protein-interacting protein	99.89
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	99.83
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.81
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	99.79
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	99.76
PF08920		144	SF3b1: Splicing factor 3B subunit 1; InterPro: IPR	99.72
KOG1242		569	consensus Protein containing adaptin N-terminal re	99.71
KOG1242		569	consensus Protein containing adaptin N-terminal re	99.66
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	99.66
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	99.64
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.58
KOG0212		675	consensus Uncharacterized conserved protein [Funct	99.57
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	99.56
PTZ00429		746	beta-adaptin; Provisional	99.52
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.44
PRK09687		280	putative lyase; Provisional	99.32
PRK09687		280	putative lyase; Provisional	99.29
KOG0212		675	consensus Uncharacterized conserved protein [Funct	99.28
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	99.26
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.25
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	99.25
PTZ00429		746	beta-adaptin; Provisional	99.22
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.2
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	99.17
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	99.16
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	99.11
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	99.04
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.99
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	98.95
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.9
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	98.83
KOG0891		2341	consensus DNA-dependent protein kinase [Replicatio	98.72
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	98.71
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.64
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	98.63
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	98.62
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	98.58
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	98.58
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.56
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	98.52
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	98.51
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.49
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.49
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	98.48
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.47
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	98.43
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	98.43
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	98.41
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.32
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	98.28
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	98.25
COG5096		757	Vesicle coat complex, various subunits [Intracellu	98.22
KOG2062		929	consensus 26S proteasome regulatory complex, subun	98.21
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	98.14
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	98.13
TIGR02270		410	conserved hypothetical protein. Members are found	98.08
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	98.03
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	97.98
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	97.97
PF05004		309	IFRD: Interferon-related developmental regulator (	97.97
KOG2259		823	consensus Uncharacterized conserved protein [Funct	97.93
COG1413		335	FOG: HEAT repeat [Energy production and conversion	97.92
TIGR02270		410	conserved hypothetical protein. Members are found	97.91
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	97.89
KOG2032		533	consensus Uncharacterized conserved protein [Funct	97.84
KOG2259		823	consensus Uncharacterized conserved protein [Funct	97.8
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	97.73
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	97.72
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.72
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.71
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	97.71
PF05804		708	KAP: Kinesin-associated protein (KAP)	97.69
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.68
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.66
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	97.62
COG1413		335	FOG: HEAT repeat [Energy production and conversion	97.51
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.5
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	97.49
KOG0413		1529	consensus Uncharacterized conserved protein relate	97.46
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	97.43
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	97.41
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.35
KOG2062		929	consensus 26S proteasome regulatory complex, subun	97.33
KOG2956		516	consensus CLIP-associating protein [General functi	97.3
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	97.27
KOG2032		533	consensus Uncharacterized conserved protein [Funct	97.25
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	97.23
KOG2956		516	consensus CLIP-associating protein [General functi	97.22
PF05004		309	IFRD: Interferon-related developmental regulator (	97.22
PF11865		160	DUF3385: Domain of unknown function (DUF3385); Int	97.21
KOG0414		1251	consensus Chromosome condensation complex Condensi	97.21
KOG0891		2341	consensus DNA-dependent protein kinase [Replicatio	97.2
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	97.2
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	97.14
KOG1243		690	consensus Protein kinase [General function predict	97.11
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	97.08
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	97.08
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.05
PF05804		708	KAP: Kinesin-associated protein (KAP)	97.02
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.01
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	96.96
KOG0413		1529	consensus Uncharacterized conserved protein relate	96.94
KOG2025		892	consensus Chromosome condensation complex Condensi	96.92
COG5096		757	Vesicle coat complex, various subunits [Intracellu	96.92
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	96.91
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	96.9
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.9
KOG1949		1005	consensus Uncharacterized conserved protein [Funct	96.87
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.82
PF13251		182	DUF4042: Domain of unknown function (DUF4042)	96.82
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.73
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	96.7
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	96.56
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	96.5
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.43
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	96.41
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	96.39
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.37
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	96.28
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	96.19
KOG4653		982	consensus Uncharacterized conserved protein [Funct	96.15
KOG2137		700	consensus Protein kinase [Signal transduction mech	96.04
KOG2081		559	consensus Nuclear transport regulator [Intracellul	96.02
KOG1293		678	consensus Proteins containing armadillo/beta-caten	95.99
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	95.97
KOG4653		982	consensus Uncharacterized conserved protein [Funct	95.96
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	95.89
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	95.88
KOG0567		289	consensus HEAT repeat-containing protein [General	95.87
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	95.86
KOG2933		334	consensus Uncharacterized conserved protein [Funct	95.85
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	95.84
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	95.82
KOG2025		892	consensus Chromosome condensation complex Condensi	95.81
COG5116		926	RPN2 26S proteasome regulatory complex component [	95.73
PLN03076		1780	ARF guanine nucleotide exchange factor (ARF-GEF);	95.71
KOG4413		524	consensus 26S proteasome regulatory complex, subun	95.52
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	95.45
PF05536		543	Neurochondrin: Neurochondrin	95.45
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	95.43
KOG0567		289	consensus HEAT repeat-containing protein [General	95.43
PLN03076		1780	ARF guanine nucleotide exchange factor (ARF-GEF);	95.42
PF13251		182	DUF4042: Domain of unknown function (DUF4042)	95.4
PF11865		160	DUF3385: Domain of unknown function (DUF3385); Int	95.22
KOG1243		690	consensus Protein kinase [General function predict	95.2
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	95.14
KOG4413		524	consensus 26S proteasome regulatory complex, subun	95.11
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	95.1
KOG2549		576	consensus Transcription initiation factor TFIID, s	95.07
KOG2137		700	consensus Protein kinase [Signal transduction mech	94.95
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	94.92
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	94.92
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	94.83
PF01603		409	B56: Protein phosphatase 2A regulatory B subunit (	94.78
KOG2549		576	consensus Transcription initiation factor TFIID, s	94.71
KOG2933		334	consensus Uncharacterized conserved protein [Funct	94.56
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	94.54
PF10521		282	DUF2454: Protein of unknown function (DUF2454); In	94.5
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	94.28
PF04118		307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	94.22
KOG0889		3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	94.11
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	94.05
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	93.98
cd08050		343	TAF6 TATA Binding Protein (TBP) Associated Factor	93.97
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	93.94
PF04118		307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	93.83
KOG1949		1005	consensus Uncharacterized conserved protein [Funct	93.82
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	93.59
COG5095		450	TAF6 Transcription initiation factor TFIID, subuni	93.51
COG5116		926	RPN2 26S proteasome regulatory complex component [	93.24
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.1
COG5095		450	TAF6 Transcription initiation factor TFIID, subuni	93.08
KOG4500		604	consensus Rho/Rac GTPase guanine nucleotide exchan	93.07
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	92.78
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	92.44
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	92.36
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	92.15
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	91.9
KOG4524		1014	consensus Uncharacterized conserved protein [Funct	91.35
cd08050		343	TAF6 TATA Binding Protein (TBP) Associated Factor	91.01
KOG1822		2067	consensus Uncharacterized conserved protein [Funct	90.91
KOG1837		1621	consensus Uncharacterized conserved protein [Funct	90.89
PF13001		501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	90.7
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	90.69
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	90.55
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	90.51
COG5234		993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	90.18
COG5656		970	SXM1 Importin, protein involved in nuclear import	89.65
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	89.61
PF01603		409	B56: Protein phosphatase 2A regulatory B subunit (	89.59
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	89.49
PF05536		543	Neurochondrin: Neurochondrin	89.19
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	89.11
PF12231		372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	88.78
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	88.28
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	88.07
KOG2149		393	consensus Uncharacterized conserved protein [Funct	87.76
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	87.69
PF10521		282	DUF2454: Protein of unknown function (DUF2454); In	87.5
PF12530		234	DUF3730: Protein of unknown function (DUF3730) ; I	87.18
KOG2081		559	consensus Nuclear transport regulator [Intracellul	86.92
PF08623		169	TIP120: TATA-binding protein interacting (TIP20);	86.79
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	86.74
KOG1048		717	consensus Neural adherens junction protein Plakoph	86.66
PF08161		198	NUC173: NUC173 domain; InterPro: IPR012978 This is	86.6
COG5098		1128	Chromosome condensation complex Condensin, subunit	86.19
COG5656		970	SXM1 Importin, protein involved in nuclear import	85.81
KOG2085		457	consensus Serine/threonine protein phosphatase 2A,	85.72
KOG1822		2067	consensus Uncharacterized conserved protein [Funct	85.67
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	85.36
PF12074		339	DUF3554: Domain of unknown function (DUF3554); Int	85.07
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	84.78
PF04510		174	DUF577: Family of unknown function (DUF577); Inter	84.43
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	83.92
KOG3961		262	consensus Uncharacterized conserved protein [Funct	83.91
PF13001		501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	83.78
PF12074		339	DUF3554: Domain of unknown function (DUF3554); Int	81.74
PF00790		140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	81.59
PF12054		441	DUF3535: Domain of unknown function (DUF3535); Int	80.98
cd03568		144	VHS_STAM VHS domain family, STAM subfamily; member	80.84
PF14631		1426	FancD2: Fanconi anaemia protein FancD2 nuclease; P	80.58
KOG0803		1312	consensus Predicted E3 ubiquitin ligase [Posttrans	80.2
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	80.18

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=2.2e-241  Score=2021.06  Aligned_cols=1144  Identities=73%  Similarity=1.136  Sum_probs=1074.9

Q ss_pred             ccccccccccCCCCcccccccccCCCcccccccCCchHHhhhhccccCchhhhhcCCCCCCCCCCCCCcCCCCCCchhhh
Q 000827           23 TSLTFDRDLYGGTDRDAYVSSIPVNDEDDANVDSMDSEVARKLASYTAPKSLLNEMPRGGDDDGSNDNLGFKKPGRIIDR  102 (1265)
Q Consensus        23 ~~~~~d~~~y~~~~~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~ytap~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r  102 (1265)
                      .+|+||+||||+++.++|++||++++++|.|+| +.+..+++..+|+||..+++|.++..   +++|++++++.++|+||
T Consensus        25 ~~~~~d~~~y~~~~~~~y~~si~~~~~~~~d~d-~~~~~~q~~~~y~~p~~~l~e~a~~~---e~~d~~~~~~~~~i~~r  100 (1172)
T KOG0213|consen   25 TGGQFDADLYGSSDPESYSTSIAANEADDVDED-STPLVGQKSTPYTAPESLLNEVARIE---EEYDPMAEKRTKTIADR  100 (1172)
T ss_pred             hcCccchhhhCCCChhhcccccccccccccccc-cccccccccCcccchHHHHHHhhhhc---cccChhhhccccchhhh
Confidence            359999999999888999999999998887776 45556789999999999999999875   67889999899999999


Q ss_pred             hHHHHHHHhhcccCCCCCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcc
Q 000827          103 EDEYRRRRLQRVISPERHDAFAAGEKTPDPSVRTYVEVMREQAHMREREETLKQIAQKKKEEEEAAKAESGSKRRNRWDQ  182 (1265)
Q Consensus       103 e~~y~~rr~~r~~sp~r~D~Fa~~~~~~~~~~~ty~d~m~e~~l~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~rwd~  182 (1265)
                      |++||+||++|+|||+|.|||++  +|||  +|||+|+||||++++||.+++|+|++|.|+|++....++ .+   |  +
T Consensus       101 e~~y~~~r~~~~~sp~r~d~f~~--~~~d--~rty~~~mre~~l~~e~~~~~~~l~~~~k~g~~~~~~~~-~~---~--~  170 (1172)
T KOG0213|consen  101 EDEYHKRRRDRQISPDRVDAFAD--KTPD--GRTYTDVMREQMLEKEEREVRRELAEKAKEGEEHSTSQP-KK---R--L  170 (1172)
T ss_pred             hhHHHHHhhccccCccccccccc--CCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCc-hh---c--c
Confidence            99999999999999999999998  7887  599999999999999999999999999999965322221 11   1  1


Q ss_pred             ccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000827          183 SQDEAVPAPAKKAKPEAASSDWDLPDSTPGVSGRWDATPTPGRVSDATPSAGRRNRWDETPTPGRVADSDGTPAGGVTPG  262 (1265)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~tp~~~~~~~~~~~~~~~srWD~tP~~~~~~~~~~~~~~~~~~~  262 (1265)
                      +..++                   .                   ..   .++|||||||||..             .++.
T Consensus       171 ~~~~t-------------------~-------------------~a---~~prrnrwdetp~~-------------~t~~  196 (1172)
T KOG0213|consen  171 EANNT-------------------A-------------------SA---ATPRRNRWDETPPG-------------VTPV  196 (1172)
T ss_pred             CCCcc-------------------c-------------------cc---cCccccccccCCCC-------------CCCC
Confidence            10000                   0                   00   13488999999931             1233


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCcCcccccCCCCCCCCCCCCCCCCCCCC-cccCC-cCcCCCCCcccccccCCCCHH
Q 000827          263 ATPAGMTWDATPKGLATPTPKRQRSRWDETPATMGSATPMAGATPAAAYTPG-VTPVG-AVDVATPTPSAINLRGALTPE  340 (1265)
Q Consensus       263 ~tp~~~~~~~tp~~~~t~~~~~~rs~~d~tp~~~~~~~~~~~~~p~~~~~p~-~~p~~-~~~~~tp~~~~~~~~~~~~~~  340 (1265)
                      +|+....      +..||+++||||||||||....      +.-.||.++|+ +||.| .+.|+||+|.           
T Consensus       197 ~~~~~~~------~e~tp~~~KrrSrWDe~p~~s~------~~~t~~~~tP~~~t~~g~~~~~~tp~~l-----------  253 (1172)
T KOG0213|consen  197 ATRMEDK------GEDTPRSTKRRSRWDETPNASR------GNVTPWEVTPGTATPIGRLKWDQTPTPL-----------  253 (1172)
T ss_pred             CCccccc------cCcCccccchhhhccCCccccc------ccCCcceecCCCcCcccccccccCCccc-----------
Confidence            3332222      2335567889999999997642      23346677776 88988 5779999974           


Q ss_pred             HHhhhhhhhhhcccCCCCCHHHhhhcCCCCCceecCCCCCCCCCCCchhhcccCCCCCCCCccccCCCCcCCCCCCCCCC
Q 000827          341 QYNLMRWEKDIEERNRPLTDEELDAMFPQEGYKILDPPPSYVPIRTPARKLLATPTPLGTPLYQIPEENRGQQFDVPKEA  420 (1265)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (1265)
                        +.+||+++++.+|++++++++|+++|.+||+++.||.+|.++++|  +|++||+|..  +|.||.+++...+ ...++
T Consensus       254 --~~~RwE~~l~~~~R~~~~eeld~~~p~~gy~~l~pp~~y~~i~tp--kl~~~~tp~~--g~~~~~e~~~~k~-~~~~~  326 (1172)
T KOG0213|consen  254 --GYIRWEKDLWSRNRPLTDEELDALFPDSGYKVLYPPMGYREIRTP--KLMATPTPAR--GFHMPQEDRPEKY-VDYDP  326 (1172)
T ss_pred             --ceeehhhhcccccCCCchhhhhhhcCcccccccCCCcccccccch--hhhcCCcccc--ccccccccccccc-ccCCC
Confidence              246999999999999999999999999999999999999999999  8999999965  5999999875443 33455


Q ss_pred             CC--CCCCCChhhHHhHHhhcCcCCCCCCChhHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHHhhcCChhhHHHHhHH
Q 000827          421 PG--GLPFMKPEDYQYFGALLNEDEEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPL  498 (1265)
Q Consensus       421 ~~--~l~~~~~~d~~~f~~l~~~~~~~~l~~~~~~~~~i~~lll~lkn~~~~vR~~A~r~L~~~A~~~G~~~~~~~iLp~  498 (1265)
                      .+  +|||||++|.+||++++...+++.|+++|++|++||++||++|||++.+|+.++|+|+++|++||++++||++||+
T Consensus       327 ~g~~~l~flkpeD~~yf~~ll~d~~e~~L~~~e~kEr~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpl  406 (1172)
T KOG0213|consen  327 HGYAGLPFLKPEDLQYFADLLKDFDEPLLEDEEGKERKIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPL  406 (1172)
T ss_pred             CCcCCCCcCChhhHHHHHHHHhhcChhhcCcccccHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            55  7999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhchHHHHHhhccCCC
Q 000827          499 LMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDID  578 (1265)
Q Consensus       499 l~~~~led~~R~~~v~vi~~l~~~l~~~v~p~~~~Ll~~i~~lL~ded~~VR~~a~~il~~La~~~Gl~~~~~~L~~~l~  578 (1265)
                      +|+..|+||+||.+|++|++|+++++++++||+|+||.+|+|+|+|||+++|.++++||+||++++|+++|+++|+|+++
T Consensus       407 lMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILvViepllided~yar~egreIisnLakaaGla~mistmrpDid  486 (1172)
T KOG0213|consen  407 LMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDID  486 (1172)
T ss_pred             HcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHhhhChhhHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHhhcCCCC
Q 000827          579 NIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDEN  658 (1265)
Q Consensus       579 ~~d~~vR~~aa~~l~~lA~~lg~~~Llp~L~~~l~s~~s~~~R~aal~~L~~i~~~~g~~l~p~L~~ll~~l~~~L~De~  658 (1265)
                      +.|+|||++++++++++|+++|+|+|+|||+++|.|++||+.||+|++++++||+.+||.+.|||..++.+|.+++.|++
T Consensus       487 n~deYVRnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~  566 (1172)
T KOG0213|consen  487 NKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQ  566 (1172)
T ss_pred             cccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCccchhhhHHhHHHHHHhhhccchHHHHHHHHHHhhhhhhhhHhhhhhhHHHHHHHHHHHhC
Q 000827          659 QKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMFILIREFQ  738 (1265)
Q Consensus       659 ~~VR~~A~~aL~~lae~~~p~~~~~~~~iL~~L~~~l~~~~~~~la~~l~a~~~lip~~~~~~~~~~~~~im~~L~~~l~  738 (1265)
                      .+||..++.+++.+++++.||+++.|+.+|.+||++++.|+++.+++|+++++++||+|+++|+.||++++|-+++++|+
T Consensus       567 qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~  646 (1172)
T KOG0213|consen  567 QKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFG  646 (1172)
T ss_pred             hhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhccCCcchhhhhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcChhhhHHHHHHHhc
Q 000827          739 SPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLK  818 (1265)
Q Consensus       739 ~~de~~r~~al~~l~~~~~~~~~~~~~l~~~ilp~l~~~~~~~~~~~d~~~~~~ll~~~~~la~~~g~~~il~~i~~~l~  818 (1265)
                      ++|++|++.+|+++++||.++|++++|++.+++|.||..||.++++.|+++++++++++++||+++|..+++.+++..++
T Consensus       647 sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lk  726 (1172)
T KOG0213|consen  647 SPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLK  726 (1172)
T ss_pred             CChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhchhhhchHHHHHHHHH
Q 000827          819 DESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIK  898 (1265)
Q Consensus       819 d~~~~vR~~a~~~l~~ii~~lg~~~~~~~~~~~ll~~ll~~l~e~~~ed~~~al~aL~~I~~~lg~~~~p~Lp~ilp~Ll  898 (1265)
                      |++++||+++++++.+++..+|..+++++++++++++++++||+++.++. .++.+||++++.+|.+++||+|+|+++++
T Consensus       727 de~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL  805 (1172)
T KOG0213|consen  727 DEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTIL  805 (1172)
T ss_pred             cccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988884 89999999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhCcccCCccHHhHH
Q 000827          899 WRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLL  978 (1265)
Q Consensus       899 ~~L~d~~~~VR~~A~~~lg~La~~l~~~~~~~ll~~L~~~L~~~L~d~~~~V~~~al~aL~~lv~~~g~~~l~p~l~~Ll  978 (1265)
                      +.|++++++||++|++++++|+.+|+.|.++++|.+|+.+|+++|+++||+|++++++|++.|++++|.+.+.|++++|+
T Consensus       806 ~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dll  885 (1172)
T KOG0213|consen  806 WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLL  885 (1172)
T ss_pred             HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhCcHHHHHHH
Q 000827          979 PRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATL 1058 (1265)
Q Consensus       979 p~Ll~~L~~~~~~Vre~ai~~ig~Ia~~~~~~~~~~e~~~il~~LL~~Lk~~~~~iR~~a~~tlg~Ia~~iGp~~vlp~L 1058 (1265)
                      |+|+++|+|+|++|+++|+.++|.||..++++++.+|||+||++|+++|+++++.+|++|+++||+|++++||++||.+|
T Consensus       886 PrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatL  965 (1172)
T KOG0213|consen  886 PRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATL  965 (1172)
T ss_pred             ccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccchhhHHHHHHHHHHHHhhcCCcccHHHHHhhcCCCchhHHHHHHHHHHHHHHHhchhhhhhHHhHHHHHHHHh
Q 000827         1059 LNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDAL 1138 (1265)
Q Consensus      1059 l~~L~~~e~~~R~~~~~ai~~l~e~~gp~~vlPaL~~~~~~~~~~vq~~vl~al~~l~~~ig~~~~~yi~~i~PlL~~~l 1138 (1265)
                      ||+|++|||++|+|+++||++|+|+||||+|||+||++|++|+.|||||||++++|+|+|||+++++|+|+++|+|+++|
T Consensus       966 lnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAl 1045 (1172)
T KOG0213|consen  966 LNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDAL 1045 (1172)
T ss_pred             HhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCChhHHHHHHHHHHHHHhcccCCCchhHHHHHHHhhhhhcccCChHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcch
Q 000827         1139 MDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHP 1218 (1265)
Q Consensus      1139 ~d~d~~~Rq~A~~~l~~lal~~~g~~~e~~~~~~ln~l~~~i~~~s~~v~~~~~~a~~~~~~~~g~~~~~~~~~~gl~~~ 1218 (1265)
                      +|+|++|||+|+++++||++||+|.||||+++|+||++|||||++||||++++.+|+++++.++|++.+++|++||||||
T Consensus      1046 mDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QGLFHP 1125 (1172)
T KOG0213|consen 1046 MDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYCLQGLFHP 1125 (1172)
T ss_pred             ccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHHHHhccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhhhhhccccCcceeccCCCCccCCCccccccccccC
Q 000827         1219 ARKVREVYWKIYNSLYIGAQDALVAAYPTLADEQSNVYSRPELMMFV 1265 (1265)
Q Consensus      1219 a~~vr~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 1265 (1265)
                      |++||+.||++||++|++++|+|+||||.++++.++.|.|.||||+|
T Consensus      1126 arkVR~~yw~vyn~my~~~~dalv~~ypv~ed~p~n~y~~~eld~~l 1172 (1172)
T KOG0213|consen 1126 ARKVRKRYWTVYNSMYHGSQDALVACYPVEEDDPENAYYRYELDYVL 1172 (1172)
T ss_pred             HHHHHHHHHHHHHhHhhcccchhhhccccCCCCcchhhhhhhhcccC
Confidence            99999999999999999999999999999999999999999999986

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08920 SF3b1: Splicing factor 3B subunit 1; InterPro: IPR015016 This group of proteins consists of several eukaryotic splicing factor 3B subunit 1 proteins, which associate with p14 through a C terminus beta-strand that interacts with beta-3 of the p14 RNA recognition motif (RRM) beta-sheet, which is in turn connected to an alpha-helix by a loop that makes extensive contacts with both the shorter C-terminal helix and RRM of p14

Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>KOG1243 consensus Protein kinase [General function prediction only]	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>PF13251 DUF4042: Domain of unknown function (DUF4042)	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional	Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional	Back alignment and domain information

>PF13251 DUF4042: Domain of unknown function (DUF4042)	Back alignment and domain information

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length	Back alignment and domain information

>KOG1243 consensus Protein kinase [General function prediction only]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism	Back alignment and domain information

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)	Back alignment and domain information

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)	Back alignment and domain information

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex	Back alignment and domain information

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1837 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []	Back alignment and domain information

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []	Back alignment and domain information

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]	Back alignment and domain information

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG3961 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3	Back alignment and domain information

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised	Back alignment and domain information

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM	Back alignment and domain information

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised	Back alignment and domain information

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)	Back alignment and domain information

>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B	Back alignment and domain information

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1265
2fho_A		47	Nmr Solution Structure Of The Human Spliceosomal Pr		2e-12
3lqv_P		39	Branch Recognition By Sf3b14 Length = 39		2e-09
2f9d_P		43	2.5 Angstrom Resolution Structure Of The Spliceosom		2e-08
2f9j_P		36	3.0 Angstrom Resolution Structure Of A Y22m Mutant		1e-07
2ie3_A		589	Structure Of The Protein Phosphatase 2a Core Enzyme		2e-06
1b3u_A		588	Crystal Structure Of Constant Regulatory Domain Of		2e-06
3fga_A		588	Structural Basis Of Pp2a And Sgo Interaction Length		2e-06
2iae_A		589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		2e-06
2pkg_A		580	Structure Of A Complex Between The A Subunit Of Pro		3e-06
3dw8_A		582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		3e-06
2nyl_A		582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		2e-04

>pdb|2FHO|A Chain A, Nmr Solution Structure Of The Human Spliceosomal Protein Complex P14-Sf3b155 Length = 47